isoform	chrom	strand	length	exons	structural_category	associated_gene	associated_transcript	ref_length	ref_exons	diff_to_TSS	diff_to_TTS	diff_to_gene_TSS	diff_to_gene_TTS	subcategory	RTS_stage	all_canonical	min_sample_cov	min_cov	min_cov_pos	sd_cov	FL	n_indels	n_indels_junc	bite	iso_exp	gene_exp	ratio_exp	FSM_class	coding	ORF_length	CDS_length	CDS_start	CDS_end	CDS_genomic_start	CDS_genomic_end	predicted_NMD	perc_A_downstream_TTS	seq_A_downstream_TTS	dist_to_cage_peak	within_cage_peak	pos_cage_peak	dist_to_polya_site	within_polya_site	polyA_motif	polyA_dist	ORF_seq	TSS_genomic_coord	TTS_genomic_coord	experiment_id	entry_id	LRGASP_id
ENSMUST00000000049.6	chr11	+	1190	8	FSM	ENSMUSG00000000049.12	ENSMUST00000000049.6	1190	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGACTCGTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	108286118	108305222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_108286234_108286641_108286819_108288124_108288222_108295636_108295714_108298116_108298306_108299956_108300137_108302820_108303019_108305065
ENSMUST00000000058.7	chr6	+	819	3	FSM	ENSMUSG00000000058.7	ENSMUST00000000058.7	2733	3	142	1772	0	-95	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTAGAGTAATTTTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	17281325	17287342	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_17281510_17281893_17282082_17286895
ENSMUST00000000090.8	chr9	+	645	5	FSM	ENSMUSG00000000088.8	ENSMUST00000000090.8	645	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1923	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGGTCTTGTGATGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	57428561	57439709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_57428699_57436238_57436356_57437523_57437646_57438951_57439076_57439564
ENSMUST00000000171.15	chr9	+	1256	6	FSM	ENSMUSG00000000167.15	ENSMUST00000000171.15	1256	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTATTTGGTGTTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	50528620	50536297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_50528899_50529745_50529950_50531054_50531179_50532244_50532491_50532920_50533187_50536159
ENSMUST00000000193.6	chr11	+	813	3	FSM	ENSMUSG00000035385.6	ENSMUST00000000193.6	813	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1052	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGACTTTGAGTGTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	81926396	81928279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_81926564_81927308_81927427_81927751
ENSMUST00000000199.8	chr2	+	983	8	FSM	ENSMUSG00000062661.7	ENSMUST00000000199.8	4653	8	0	3670	0	-3670	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCACCGCAGCCTGACACC	NA	NA	NA	NA	NA	NA	NA	NA	31135834	31182331	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_31136255_31160623_31160649_31170677_31170817_31172320_31172400_31174158_31174248_31174673_31174752_31177298_31177416_31182295
ENSMUST00000000260.13	chr13	+	1580	9	FSM	ENSMUSG00000000253.14	ENSMUST00000000260.13	1580	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGCTGGAGTTTGCGT	NA	NA	NA	NA	NA	NA	NA	NA	45660919	45699858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_45661220_45667870_45667991_45670474_45670559_45674327_45674502_45683183_45683266_45685769_45685877_45692500_45692544_45695954_45696115_45699348
ENSMUST00000000304.14	chr10	+	858	6	FSM	ENSMUSG00000000295.14	ENSMUST00000000304.14	858	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	301	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTGTCTTCTGTTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	31189378	31204200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_31189480_31190510_31190633_31192288_31192392_31196263_31196333_31202017_31202157_31203876
ENSMUST00000000310.14	chr11	-	953	7	FSM	ENSMUSG00000000301.17	ENSMUST00000000310.14	953	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTGGTCTCCTTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	59937303	59861439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59922538_59922647_59937169
ENSMUST00000000335.12	chr16	-	823	6	FSM	ENSMUSG00000000326.14	ENSMUST00000000335.12	1397	6	136	438	136	-438	multi-exon	FALSE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCCTGACTTCCTGGCGT	NA	NA	NA	NA	NA	NA	NA	NA	18245218	18226731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
ENSMUST00000000342.3	chr11	+	612	3	FSM	ENSMUSG00000020676.3	ENSMUST00000000342.3	1082	3	0	470	0	-470	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTAATTTCTTGCATATG	NA	NA	NA	NA	NA	NA	NA	NA	81948648	81953311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_81948869_81952504_81952617_81953031
ENSMUST00000000356.10	chr15	+	2135	4	FSM	ENSMUSG00000000346.10	ENSMUST00000000356.10	2135	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5749	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAGCATTCTTTACTTAG	NA	NA	NA	NA	NA	NA	NA	NA	100513229	100518642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248
ENSMUST00000000388.15	chr11	+	1858	10	FSM	ENSMUSG00000000378.16	ENSMUST00000000388.15	1858	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAGTTGTCAAGCATTT	NA	NA	NA	NA	NA	NA	NA	NA	6496886	6546744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_6497030_6519963_6520138_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
ENSMUST00000000543.6	chr15	+	2033	8	FSM	ENSMUSG00000000531.6	ENSMUST00000000543.6	2033	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCAGTGTGGTAACT	NA	NA	NA	NA	NA	NA	NA	NA	101122068	101130637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_101122426_101124794_101124845_101126712_101126768_101126871_101126975_101128414_101128509_101128605_101128673_101128865_101128933_101129397
ENSMUST00000000594.9	chr11	+	526	5	FSM	ENSMUSG00000000581.9	ENSMUST00000000594.9	2981	5	0	2455	0	-13	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAGTACATCCTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	17207593	17216721	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_17207659_17212647_17212795_17213608_17213676_17213950_17214007_17216530
ENSMUST00000000608.8	chr11	+	3448	4	FSM	ENSMUSG00000000594.8	ENSMUST00000000608.8	4127	4	0	679	0	-679	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGGGTGTCTGATGATTA	NA	NA	NA	NA	NA	NA	NA	NA	54988940	55003176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_54989071_54994412_54994575_54999723_54999907_55000203
ENSMUST00000000756.6	chr8	+	600	6	FSM	ENSMUSG00000000740.13	ENSMUST00000000756.6	780	6	0	180	0	-180	multi-exon	FALSE	canonical	NA	NA	NA	NA	1217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGTTATCACAGAAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	123829088	123831803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
ENSMUST00000000844.15	chr2	+	1170	7	FSM	ENSMUSG00000000827.19	ENSMUST00000000844.15	2950	7	50	1730	0	254	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACCCTAGAAAGGAAACATA	NA	NA	NA	NA	NA	NA	NA	NA	181139023	181157434	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181154831_181154881_181156872
ENSMUST00000000925.10	chr10	-	1660	9	FSM	ENSMUSG00000000902.14	ENSMUST00000000925.10	1660	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCAGTAGCATAAAACTG	NA	NA	NA	NA	NA	NA	NA	NA	75757451	75732602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752606_75752746_75757136
ENSMUST00000000964.6	chr6	-	2251	2	FSM	ENSMUSG00000029844.10	ENSMUST00000000964.6	2251	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTAAGCATCTTGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	52135297	52132569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_52134070_52134546
ENSMUST00000000984.9	chr14	-	2132	10	FSM	ENSMUSG00000000958.11	ENSMUST00000000984.9	2132	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	NA	NA	NA	NA	NA	NA	NA	54646917	54606898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54646706
ENSMUST00000000985.7	chr14	+	2538	10	FSM	ENSMUSG00000000959.8	ENSMUST00000000985.7	2538	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	527	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTTCAGAGTTGAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	54598297	54607130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_54598375_54598778_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
ENSMUST00000001046.7	chr3	+	226	3	FSM	ENSMUSG00000001020.9	ENSMUST00000001046.7	498	3	0	272	0	-272	multi-exon	FALSE	canonical	NA	NA	NA	NA	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCAACTTGGACAGCAAC	NA	NA	NA	NA	NA	NA	NA	NA	90511077	90513080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_90511114_90512303_90512460_90513046
ENSMUST00000001047.8	chr3	+	712	3	FSM	ENSMUSG00000001021.14	ENSMUST00000001047.8	712	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACTTTTGTTTTTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	90507521	90510009	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_90507576_90509086_90509233_90509497
ENSMUST00000001051.9	chr3	+	731	3	FSM	ENSMUSG00000001025.9	ENSMUST00000001051.9	731	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCATGTGTTCTGGCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	90520188	90521721	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_90520534_90521049_90521212_90521497
ENSMUST00000001081.10	chr11	-	1946	10	FSM	ENSMUSG00000001054.10	ENSMUST00000001081.10	1946	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	723	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAATGATTGCATGGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	51526723	51514499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_51514974_51515055_51515211_51515301_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
ENSMUST00000001109.11	chr5	-	1907	13	FSM	ENSMUSG00000001082.13	ENSMUST00000001109.11	1907	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCGTCTTACTATTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	34794533	34790985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794270
ENSMUST00000001116.5	chr4	+	4535	2	FSM	ENSMUSG00000001089.15	ENSMUST00000001116.5	7246	2	0	2711	0	213	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGCTGAATCTTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	136267664	136273918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_136270830_136272548
ENSMUST00000001125.6	chr5	-	1026	7	FSM	ENSMUSG00000001098.16	ENSMUST00000001125.6	1026	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCCTCCCTCTGCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	114518544	114503682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_114503928_114505269_114505466_114506402_114506456_114507001_114507092_114508119_114508290_114512956_114513171_114518486
ENSMUST00000001127.11	chr11	+	1443	11	FSM	ENSMUSG00000001100.11	ENSMUST00000001127.11	2054	11	223	388	119	129	multi-exon	FALSE	canonical	NA	NA	NA	NA	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGGTCTCTCTACCCTCCG	NA	NA	NA	NA	NA	NA	NA	NA	78403241	78413174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
ENSMUST00000001127.11-1	chr11	+	1489	11	FSM	ENSMUSG00000001100.11	ENSMUST00000001127.11	2054	11	0	565	0	-48	multi-exon	FALSE	canonical	NA	NA	NA	NA	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACGGCCATTTTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	78403018	78412997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
ENSMUST00000001172.12	chr1	-	2109	4	FSM	ENSMUSG00000079610.10	ENSMUST00000001172.12	2109	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAATGTGTGGCGCTAAT	NA	NA	NA	NA	NA	NA	NA	NA	36586526	36577174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36586166
ENSMUST00000001204.8	chr12	+	3987	6	FSM	ENSMUSG00000001175.17	ENSMUST00000001204.8	3987	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCTCTTAACTGTGAACT	NA	NA	NA	NA	NA	NA	NA	NA	100166402	100176065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_100166565_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
ENSMUST00000001242.9	chr10	-	1378	7	FSM	ENSMUSG00000053329.8	ENSMUST00000001242.9	1378	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	245	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATGTCTCAGGCCTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	78005616	77997899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_77998553_77999230_77999388_78000671_78000765_78003228_78003349_78004642_78004757_78005206_78005260_78005428
ENSMUST00000001280.14	chr7	-	2713	19	FSM	ENSMUSG00000001248.16	ENSMUST00000001280.14	2713	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	30850507	30829551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835021_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
ENSMUST00000001347.7	chr11	+	844	5	FSM	ENSMUSG00000001313.13	ENSMUST00000001347.7	1394	5	0	550	0	-550	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGGGTTGCAGTGGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	101359000	101362129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_101359266_101359758_101359847_101360838_101360949_101361543_101361679_101361883
ENSMUST00000001384.6	chr9	+	2381	7	FSM	ENSMUSG00000001349.6	ENSMUST00000001384.6	2381	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACAAACAAAAACTGAATC	NA	NA	NA	NA	NA	NA	NA	NA	22010563	22020926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_22010715_22012436_22012559_22015601_22015669_22016665_22016804_22016965_22017077_22019046_22019194_22019281
ENSMUST00000001402.14	chr9	-	1850	13	FSM	ENSMUSG00000001366.15	ENSMUST00000001402.14	1850	13	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGTGTGGATGGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	78016347	77988783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78016283
ENSMUST00000001416.8	chr18	-	1552	13	FSM	ENSMUSG00000001380.8	ENSMUST00000001416.8	1989	13	163	274	163	-48	multi-exon	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGCCATCCAGCAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	36916095	36899854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904380_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
ENSMUST00000001419.10	chr18	+	2310	6	FSM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	372	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGACTTTTCTTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	36926928	36932719	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_36927013_36927349_36927444_36928093_36928218_36929089_36929164_36929551_36929698_36930931
ENSMUST00000001439.7	chr2	+	1772	6	FSM	ENSMUSG00000001403.14	ENSMUST00000001439.7	2191	6	0	419	0	-419	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCCACAGTTTCTTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	164611822	164620323	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_164612001_164612286_164612315_164613212_164613300_164613773_164613979_164614086_164614147_164619109
ENSMUST00000001454.14	chr3	+	1017	5	FSM	ENSMUSG00000001418.14	ENSMUST00000001454.14	1017	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCACTCTCCAGAGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	88232388	88235675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_88232509_88232983_88233239_88233717_88233937_88235163_88235421_88235509
ENSMUST00000001485.10	chr11	+	1285	5	FSM	ENSMUSG00000001445.11	ENSMUST00000001485.10	1708	5	35	388	0	307	multi-exon	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGGTCTTGAATTCGGT	NA	NA	NA	NA	NA	NA	NA	NA	96932420	96939651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_96932479_96935353_96935524_96937855_96938021_96938238_96938384_96938904
ENSMUST00000001520.13	chr8	+	3566	17	FSM	ENSMUSG00000031967.16	ENSMUST00000001520.13	4227	17	37	624	37	-624	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATCTCTACTGTTTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	124204678	124230031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_124204787_124207087_124207176_124207809_124207885_124211341_124211428_124212627_124212778_124214097_124214167_124214939_124215065_124216493_124216765_124219279_124219418_124219613_124219768_124220566_124220675_124221544_124221671_124225326_124225438_124226730_124226847_124227971_124228173_124228253_124228449_124228586
ENSMUST00000001538.10	chr12	+	1274	4	FSM	ENSMUSG00000001497.19	ENSMUST00000001538.10	4166	4	0	2892	0	-1343	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCCGGTCTTCCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	56742423	56756715	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_56742650_56743358_56743986_56746796_56746940_56756437
ENSMUST00000001548.14	chr11	-	4861	26	FSM	ENSMUSG00000001507.17	ENSMUST00000001548.14	4861	26	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTGTCTGCTCCTACCT	NA	NA	NA	NA	NA	NA	NA	NA	94967540	94935299	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_94936590_94937274_94937417_94937746_94937873_94942277_94942377_94943269_94943384_94944050_94944174_94944557_94944741_94944900_94945004_94946521_94946600_94946682_94946763_94947266_94947339_94947529_94947678_94947909_94948008_94948096_94948247_94948792_94948930_94949037_94949106_94950149_94950237_94950381_94950519_94950604_94950694_94952703_94952901_94953378_94953590_94953960_94954048_94956588_94956839_94959050_94959131_94959537_94959666_94966956
ENSMUST00000001559.11	chr6	-	2320	12	FSM	ENSMUSG00000001518.13	ENSMUST00000001559.11	2320	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCTCTCCAATCTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	128401894	128386406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
ENSMUST00000001611.11	chr5	+	2841	11	FSM	ENSMUSG00000001569.11	ENSMUST00000001611.11	9219	11	0	6378	0	-6378	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAACTGGGCACATGGT	NA	NA	NA	NA	NA	NA	NA	NA	29639661	29656463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_29640642_29640927_29641056_29642594_29642791_29644823_29645148_29646328_29646440_29647491_29647660_29648347_29648470_29651236_29651370_29651811_29651944_29654579_29654690_29656026
ENSMUST00000001620.13	chr3	+	2459	17	FSM	ENSMUSG00000027680.16	ENSMUST00000001620.13	2459	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTTATTTTGTTTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	34074091	34123491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34119122_34119204_34122309_34122402_34123065
ENSMUST00000001672.12	chr12	-	3378	12	FSM	ENSMUSG00000001627.13	ENSMUST00000001672.12	3378	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTGGGAGGTTTGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	40273188	40251565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_40253451_40253917_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263976_40264135_40266188_40266314_40267156_40267242_40267376_40267482_40272867
ENSMUST00000001699.8	chr15	+	1515	2	FSM	ENSMUSG00000022484.8	ENSMUST00000001699.8	1909	2	0	394	0	-394	multi-exon	FALSE	canonical	NA	NA	NA	NA	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTTCCCCCCTTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	102875230	102879934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102876044_102879232
ENSMUST00000001700.7	chr15	+	1554	2	FSM	ENSMUSG00000001655.7	ENSMUST00000001700.7	2461	2	0	907	0	-907	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGTTTTCCCAGTTACGA	NA	NA	NA	NA	NA	NA	NA	NA	102829537	102836342	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102830353_102835603
ENSMUST00000001701.4	chr15	+	2021	2	FSM	ENSMUSG00000001656.4	ENSMUST00000001701.4	2021	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATGATTTTATTTGACC	NA	NA	NA	NA	NA	NA	NA	NA	102862861	102866143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102863643_102864903
ENSMUST00000001703.8	chr15	+	1522	2	FSM	ENSMUSG00000001657.8	ENSMUST00000001703.8	1868	2	0	346	0	-346	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCCCCTTGACTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	102899038	102901907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102899648_102900994
ENSMUST00000001706.7	chr15	+	1766	3	FSM	ENSMUSG00000036139.7	ENSMUST00000001706.7	2374	3	0	608	0	9	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTCTCTCTCTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	102885466	102892923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102885537_102889523_102890623_102892326
ENSMUST00000001790.6	chr5	+	1850	5	FSM	ENSMUSG00000001739.15	ENSMUST00000001790.6	1850	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTTGCATGAATGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	136996722	137004698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_136997178_137001173_137001339_137003294_137003377_137003463_137003581_137003667
ENSMUST00000001802.10	chr11	+	1694	6	FSM	ENSMUSG00000001751.10	ENSMUST00000001802.10	2560	6	0	866	0	-866	multi-exon	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTACAACAGATCAGATGT	NA	NA	NA	NA	NA	NA	NA	NA	100960837	100967632	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_100961328_100961905_100962054_100962721_100962869_100963042_100963129_100964672_100964930_100967066
ENSMUST00000001812.5	chr6	+	3779	12	FSM	ENSMUSG00000001761.8	ENSMUST00000001812.5	3779	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGTTTCTTTTCCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	29735692	29761364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_29736353_29753468_29753675_29754320_29754531_29754690_29754864_29755172_29755393_29755481_29755606_29756779_29756873_29757255_29757365_29758334_29758521_29758864_29759014_29759482_29759618_29759850
ENSMUST00000001812.5-0	chr6	+	3212	12	FSM	ENSMUSG00000001761.8	ENSMUST00000001812.5	3779	12	0	567	0	-567	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGGGCTATAACTGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	29735692	29760797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_29736353_29753468_29753675_29754320_29754531_29754690_29754864_29755172_29755393_29755481_29755606_29756779_29756873_29757255_29757365_29758334_29758521_29758864_29759014_29759482_29759618_29759850
ENSMUST00000001825.9	chr9	+	950	11	FSM	ENSMUSG00000001774.9	ENSMUST00000001825.9	5789	11	223	4616	42	-837	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCACTATGAGAAAGGCG	NA	NA	NA	NA	NA	NA	NA	NA	18203643	18224122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
ENSMUST00000001920.13	chr2	+	830	6	FSM	ENSMUSG00000001864.14	ENSMUST00000001920.13	3117	6	0	2287	0	-77	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGAGCCTCAGGCCCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	31840150	31861167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_31840394_31840540_31840603_31852226_31852294_31855082_31855125_31859641_31859805_31860914
ENSMUST00000002029.13	chrX	+	1324	6	FSM	ENSMUSG00000001964.15	ENSMUST00000002029.13	1595	6	143	128	0	-128	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTACTGGGATAGGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	73298435	73301365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73300612
ENSMUST00000002048.8	chr11	+	1383	5	FSM	ENSMUSG00000001983.8	ENSMUST00000002048.8	1383	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCTTGAGGTGTCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	105956886	105964438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_105957345_105960331_105960439_105962692_105962821_105963356_105963535_105963926
ENSMUST00000002064.15	chr2	+	1160	8	FSM	ENSMUSG00000001999.16	ENSMUST00000002064.15	1160	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAATAGTGTTGATGACT	NA	NA	NA	NA	NA	NA	NA	NA	126912586	126939004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126933958_126934067_126937005_126937178_126938654
ENSMUST00000002081.6	chrX	+	1981	15	FSM	ENSMUSG00000002007.6	ENSMUST00000002081.6	1981	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAGTGTCTTGGAGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	72818010	72822531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_72818113_72818189_72818321_72818498_72818608_72818709_72818798_72819083_72819172_72819625_72819733_72819803_72819970_72820066_72820093_72820575_72820706_72820793_72821034_72821114_72821216_72821529_72821638_72821710_72821781_72821859_72821953_72822109
ENSMUST00000002087.14	chrX	-	1536	12	FSM	ENSMUSG00000002012.14	ENSMUST00000002087.14	1536	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGTGCTGAACTGGG	NA	NA	NA	NA	NA	NA	NA	NA	72703434	72699599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703332
ENSMUST00000002090.3	chrX	+	765	6	FSM	ENSMUSG00000002014.13	ENSMUST00000002090.3	765	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	72830667	72834432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_72830913_72832443_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ENSMUST00000002112.15	chr7	+	785	6	FSM	ENSMUSG00000002043.18	ENSMUST00000002112.15	785	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	NA	NA	NA	NA	NA	NA	NA	NA	19242636	19250070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249770
ENSMUST00000002127.14	chr11	+	939	5	FSM	ENSMUSG00000002058.14	ENSMUST00000002127.14	1329	5	24	366	0	-181	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGGGCAGCAGGGGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	78234331	78239624	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_78234613_78238043_78238158_78238622_78238726_78238912_78239086_78239356
ENSMUST00000002152.13	chr7	+	1494	4	FSM	ENSMUSG00000002083.14	ENSMUST00000002152.13	1814	4	0	320	0	-320	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCATCTCATTGCATAGG	NA	NA	NA	NA	NA	NA	NA	NA	16043540	16051810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_16043787_16046050_16046340_16047551_16047743_16051042
ENSMUST00000002171.14	chr2	+	1819	13	FSM	ENSMUSG00000002102.16	ENSMUST00000002171.14	1819	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTACCCATGTATAAATT	NA	NA	NA	NA	NA	NA	NA	NA	90884399	90896714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90894241_90894310_90896374
ENSMUST00000002177.9	chr2	-	1802	10	FSM	ENSMUSG00000002108.11	ENSMUST00000002177.9	1802	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCTCTACCACTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	91025461	91014405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_91014828_91014999_91015095_91015286_91015401_91020529_91020630_91020806_91020987_91021083_91021293_91022133_91022401_91022904_91023088_91023961_91024042_91025309
ENSMUST00000002280.11	chr7	+	2242	14	FSM	ENSMUSG00000002210.12	ENSMUST00000002280.11	2242	14	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGGTTTGTTCTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	24099043	24122203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_24099317_24102816_24102973_24104951_24105027_24105112_24105378_24105459_24105558_24106945_24107059_24114363_24114476_24115923_24116020_24116345_24116432_24119438_24119546_24120000_24120109_24120237_24120367_24120544_24120690_24121724
ENSMUST00000002297.12	chr3	-	3498	20	FSM	ENSMUSG00000002227.16	ENSMUST00000002297.12	3498	20	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	104725558	104702151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711702_104711786_104712030_104712219_104712424_104725251
ENSMUST00000002303.12	chr3	+	1202	5	FSM	ENSMUSG00000002233.14	ENSMUST00000002303.12	1202	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	104696203	104701775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_104696400_104699204_104699369_104699880_104700002_104700215_104700347_104701185
ENSMUST00000002327.6	chr17	+	2277	11	FSM	ENSMUSG00000002257.9	ENSMUST00000002327.6	2277	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGCCCTTCCCTCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	28426751	28447582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_28426913_28435938_28436080_28436574_28436761_28438718_28438956_28439050_28439198_28442645_28442755_28442861_28443161_28444818_28444986_28445074_28445274_28446780_28446872_28447042
ENSMUST00000002397.7	chr14	+	1993	10	FSM	ENSMUSG00000002326.7	ENSMUST00000002397.7	1993	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCAAGTCTGGACTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	55909691	55916657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_55909842_55910162_55910259_55910406_55910527_55912783_55912868_55913015_55913190_55914211_55914294_55914384_55914492_55914662_55914706_55915327_55915488_55915680
ENSMUST00000002445.10	chr17	+	2373	16	FSM	ENSMUSG00000002372.10	ENSMUST00000002445.10	2373	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	NA	NA	NA	NA	NA	NA	NA	56980357	57018764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
ENSMUST00000002452.8	chr17	+	545	4	FSM	ENSMUSG00000002379.8	ENSMUST00000002452.8	545	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1087	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATGTCTTAAAGGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	57024766	57029137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_57024943_57028034_57028128_57028318_57028442_57028984
ENSMUST00000002469.9	chr8	+	1611	4	FSM	ENSMUSG00000002396.9	ENSMUST00000002469.9	1611	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGCCTTGAACCGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	71823982	71826333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71824630_71825111_71825278_71825392_71825447_71825589
ENSMUST00000002495.18	chr7	+	1731	13	FSM	ENSMUSG00000041420.19	ENSMUST00000002495.18	1731	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATTCTCATTTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	15909354	15920429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15912721_15912875_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919443_15919981
ENSMUST00000002518.9	chr10	+	1411	7	FSM	ENSMUSG00000054452.11	ENSMUST00000002518.9	1411	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACTGTGTCCCTGCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	81395327	81402196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_81395503_81397052_81397151_81399928_81399993_81400506_81400552_81400681_81400745_81401125_81401201_81401305
ENSMUST00000002518.9-0	chr10	+	1201	7	FSM	ENSMUSG00000054452.11	ENSMUST00000002518.9	1411	7	0	210	0	-210	multi-exon	FALSE	canonical	NA	NA	NA	NA	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTAAAAGTTGGTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	81395327	81401986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_81395503_81397052_81397151_81399928_81399993_81400506_81400552_81400681_81400745_81401125_81401201_81401305
ENSMUST00000002551.5	chr18	+	858	4	FSM	ENSMUSG00000002477.6	ENSMUST00000002551.5	858	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCGGTGCATGTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	10617774	10628230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_10617927_10623630_10623708_10626825_10627018_10627793
ENSMUST00000002625.15	chr2	-	2005	7	FSM	ENSMUSG00000002550.17	ENSMUST00000002625.15	2005	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTGTCCTGTTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	32150171	32145013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_32146224_32146629_32146679_32148101_32148197_32148288_32148432_32148582_32148680_32149591_32149752_32149920
ENSMUST00000002655.8	chr11	-	747	4	FSM	ENSMUSG00000002580.8	ENSMUST00000002655.8	747	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCGTGTGTTTATGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	98329817	98328533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_98328972_98329062_98329140_98329472_98329571_98329683
ENSMUST00000002710.10	chr7	-	1295	7	FSM	ENSMUSG00000002635.12	ENSMUST00000002710.10	1295	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	384	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTTGGTTTATTGTTCA	NA	NA	NA	NA	NA	NA	NA	NA	33896086	33883923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_33884237_33885718_33885868_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
ENSMUST00000002737.7	chr17	+	732	4	FSM	ENSMUSG00000002661.15	ENSMUST00000002737.7	917	4	0	185	0	-174	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGGGATCTTCAAATG	NA	NA	NA	NA	NA	NA	NA	NA	57304342	57306137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_57304568_57305388_57305563_57305670_57305796_57305929
ENSMUST00000002805.14	chr2	+	774	6	FSM	ENSMUSG00000002728.15	ENSMUST00000002805.14	1172	6	21	377	21	-377	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGCATACATGTTCGA	NA	NA	NA	NA	NA	NA	NA	NA	145745181	145757968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_145745283_145750510_145750536_145753592_145753714_145754312_145754449_145757453_145757600_145757723
ENSMUST00000002808.7	chr2	-	1614	8	FSM	ENSMUSG00000002731.7	ENSMUST00000002808.7	1614	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTAGCTTTATTCTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	76478359	76460241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_76460913_76463876_76464052_76467138_76467234_76469543_76469662_76470584_76470664_76473566_76473649_76477468_76477639_76478135
ENSMUST00000002809.14	chr2	-	860	4	FSM	ENSMUSG00000002732.15	ENSMUST00000002809.14	860	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGCAAATCTGACT	NA	NA	NA	NA	NA	NA	NA	NA	76503414	76493387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_76493697_76496020_76496155_76502040_76502193_76503149
ENSMUST00000002837.11	chr5	-	3800	4	FSM	ENSMUSG00000063406.12	ENSMUST00000002837.11	3800	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	978	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATAATTGTTACCTACTCC	NA	NA	NA	NA	NA	NA	NA	NA	108280486	108269492	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_108272626_108273766_108273951_108277883_108277982_108280101
ENSMUST00000002839.9	chr17	-	2926	15	FSM	ENSMUSG00000059409.10	ENSMUST00000002839.9	2926	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGAGTCGCCTTGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	47015928	46993916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_46995053_46995186_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011073_47015758
ENSMUST00000002840.9	chr17	+	3200	17	FSM	ENSMUSG00000002763.17	ENSMUST00000002840.9	3200	17	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTCTTGTGAGAGGTTGC	NA	NA	NA	NA	NA	NA	NA	NA	47022388	47036467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_47023311_47024833_47024998_47025386_47025471_47031253_47031357_47031437_47031572_47032108_47032221_47032595_47032805_47033169_47033366_47033547_47033625_47034037_47034171_47034249_47034456_47034599_47034662_47034844_47034954_47035316_47035434_47035552_47035631_47035750_47035891_47036113
ENSMUST00000002845.8	chr17	+	722	4	FSM	ENSMUSG00000002768.9	ENSMUST00000002845.8	859	4	0	137	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCGACTCAGACCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	46992049	46993900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_46992132_46992542_46992824_46992934_46993038_46993644
ENSMUST00000002855.14	chr7	+	1599	5	FSM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCTGTTCCCTGCCCGCT	NA	NA	NA	NA	NA	NA	NA	NA	45522195	45533156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45531177_45532400
ENSMUST00000002855.14-0	chr7	+	1304	5	FSM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	53	242	0	-239	multi-exon	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTAATTTTTCATGATT	NA	NA	NA	NA	NA	NA	NA	NA	45522248	45532914	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45531177_45532400
ENSMUST00000002855.14-1	chr7	+	1331	5	FSM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	115	153	62	-150	multi-exon	FALSE	canonical	NA	NA	NA	NA	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAAATTAGGGGAAGCTAT	NA	NA	NA	NA	NA	NA	NA	NA	45522310	45533003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45531177_45532400
ENSMUST00000002880.7	chr12	+	1560	4	FSM	ENSMUSG00000002803.15	ENSMUST00000002880.7	2057	4	262	235	204	-235	multi-exon	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCCGCTGACCCTAGAC	NA	NA	NA	NA	NA	NA	NA	NA	112940444	112942315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_112940603_112940678_112940770_112940872_112940992_112941123
ENSMUST00000002883.7	chr13	+	571	6	FSM	ENSMUSG00000021319.8	ENSMUST00000002883.7	1764	6	638	555	638	-426	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCAAAGGGAAGGCCACC	NA	NA	NA	NA	NA	NA	NA	NA	19807982	19816444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_19808048_19809197_19809279_19809363_19809430_19811275_19811475_19814235_19814300_19816348
ENSMUST00000002885.8	chr13	-	2363	3	FSM	ENSMUSG00000002808.8	ENSMUST00000002885.8	2363	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1466	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGAGCCTATTAAGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	19803974	19775875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_19777519_19778616_19778826_19803463
ENSMUST00000003079.12	chr12	-	1657	12	FSM	ENSMUSG00000002997.16	ENSMUST00000003079.12	1657	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTCCAAGCATGGTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	32111234	32008474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_32008721_32010380_32010522_32012997_32013137_32013896_32013963_32015113_32015189_32017211_32017314_32022048_32022203_32025917_32026025_32037878_32037963_32043729_32043783_32088620_32088657_32110780
ENSMUST00000003121.9	chr8	+	995	8	FSM	ENSMUSG00000003037.17	ENSMUST00000003121.9	4550	8	159	3396	5	317	multi-exon	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACAAGCCTGCACCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	72915202	72934352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_72915327_72922270_72922332_72925083_72925145_72928369_72928448_72929683_72929774_72930166_72930233_72931463_72931515_72933888
ENSMUST00000003123.10	chr8	+	762	4	FSM	ENSMUSG00000003039.10	ENSMUST00000003123.10	2564	4	34	1768	34	-1768	multi-exon	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGGGACACAGGACACAGG	NA	NA	NA	NA	NA	NA	NA	NA	72973607	72976494	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_72973705_72973784_72973927_72975771_72975826_72976025
ENSMUST00000003154.7	chr10	+	1672	4	FSM	ENSMUSG00000003070.7	ENSMUST00000003154.7	2131	4	0	459	0	-459	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATTCAAGGGGTCATTTA	NA	NA	NA	NA	NA	NA	NA	NA	80015315	80025385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80015725_80022585_80022900_80024275_80024342_80024502
ENSMUST00000003156.15	chr10	+	931	4	FSM	ENSMUSG00000003072.16	ENSMUST00000003156.15	931	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTTTCTAACTGCAC	NA	NA	NA	NA	NA	NA	NA	NA	79978148	79981652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_79978441_79979665_79979820_79981052_79981142_79981256
ENSMUST00000003238.14	chr6	+	5283	11	FSM	ENSMUSG00000003154.16	ENSMUST00000003238.14	5283	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTAGTTTTTATGTTA	NA	NA	NA	NA	NA	NA	NA	NA	122796872	122822325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_122797930_122805115_122805463_122808394_122808470_122809896_122809966_122810119_122810261_122810639_122810836_122814779_122815164_122815542_122815645_122816419_122816630_122817184_122817284_122819722
ENSMUST00000003284.16	chr7	+	2031	8	FSM	ENSMUSG00000003184.16	ENSMUST00000003284.16	2031	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	44647071	44652272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650447_44651096_44651213_44651587
ENSMUST00000003290.12	chr7	-	1075	7	FSM	ENSMUSG00000003190.13	ENSMUST00000003290.12	1075	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	44647003	44640645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44640879_44642167_44642456_44643603_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886
ENSMUST00000003386.7	chr9	+	876	9	FSM	ENSMUSG00000003299.11	ENSMUST00000003386.7	1288	9	204	208	204	-208	multi-exon	FALSE	canonical	NA	NA	NA	NA	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCTAACCCTGCCCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	20914237	20919927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919789
ENSMUST00000003416.15	chr17	+	2227	13	FSM	ENSMUSG00000048440.17	ENSMUST00000003416.15	2227	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGTCTTGGTTCCAT	NA	NA	NA	NA	NA	NA	NA	NA	32755542	32770771	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_32755630_32755971_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
ENSMUST00000003433.11	chr10	-	1668	12	FSM	ENSMUSG00000020190.14	ENSMUST00000003433.11	3065	12	0	1397	0	-1397	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCCTCAGTGTTGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	80507810	80502562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_80503167_80503446_80503491_80503799_80503965_80504355_80504551_80504778_80504875_80504988_80505045_80505131_80505237_80505463_80505538_80505729_80505810_80507392_80507491_80507569_80507672_80507761
ENSMUST00000003434.14	chr10	-	3026	9	FSM	ENSMUSG00000003344.15	ENSMUST00000003434.14	3026	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTATGTTGTCTGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	80492905	80478450	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_80479526_80479659_80479807_80480095_80480184_80480436_80480630_80481173_80481372_80482214_80482321_80483538_80483696_80484393_80484514_80491963
ENSMUST00000003442.9	chr15	+	1867	12	FSM	ENSMUSG00000003352.15	ENSMUST00000003442.9	2734	12	0	867	0	-867	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTTCAGCTCACACAACC	NA	NA	NA	NA	NA	NA	NA	NA	98532647	98541543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_98533095_98537368_98537492_98537694_98537818_98538219_98538336_98538566_98538632_98538839_98538860_98539280_98539340_98539496_98539607_98539819_98539972_98540189_98540286_98540382_98540533_98541137
ENSMUST00000003444.6	chr15	+	1900	8	FSM	ENSMUSG00000003354.7	ENSMUST00000003444.6	1900	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCTGTAGTTTGGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	98606087	98621217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_98606418_98606935_98607104_98615304_98615475_98616592_98616732_98618464_98618663_98618838_98619058_98620398_98620552_98620694
ENSMUST00000003461.15	chr11	+	3417	23	FSM	ENSMUSG00000020456.18	ENSMUST00000003461.15	4127	23	33	677	0	-613	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATGCCCCCAGTGCAAT	NA	NA	NA	NA	NA	NA	NA	NA	6241665	6305965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_6241694_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
ENSMUST00000003513.11	chr7	+	1477	9	FSM	ENSMUSG00000003421.14	ENSMUST00000003513.11	1814	9	17	320	17	-320	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGTGTTGAGTTCCTTAA	NA	NA	NA	NA	NA	NA	NA	NA	44711896	44727314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
ENSMUST00000003521.10	chr7	-	661	5	FSM	ENSMUSG00000003429.12	ENSMUST00000003521.10	661	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5912	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGGAGTCTCATGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	44773863	44771802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44771983_44772252_44772383_44772586_44772663_44772842_44772975_44773720
ENSMUST00000003529.9	chr7	+	2003	14	FSM	ENSMUSG00000003437.15	ENSMUST00000003529.9	2003	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTAAAGTCTCTGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	28092375	28098813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_28092680_28093093_28093124_28094467_28094561_28094842_28094965_28095053_28095121_28095195_28095298_28095376_28095483_28095558_28095628_28095708_28095813_28096034_28096152_28096245_28096375_28097872_28097979_28098083_28098175_28098250
ENSMUST00000003575.11	chr8	+	1224	8	FSM	ENSMUSG00000031799.11	ENSMUST00000003575.11	2158	8	29	905	29	-903	multi-exon	FALSE	canonical	NA	NA	NA	NA	1398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATGTGGAAATTTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	72889101	72906081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_72889298_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
ENSMUST00000003612.13	chr11	-	4212	3	FSM	ENSMUSG00000003518.14	ENSMUST00000003612.13	4212	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGTCTGTTTTGTGTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	101875625	101861968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_101865766_101872442_101872670_101875437
ENSMUST00000003635.7	chr17	+	1131	2	FSM	ENSMUSG00000003541.7	ENSMUST00000003635.7	1131	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	501	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCGAAGTGTATCATTC	NA	NA	NA	NA	NA	NA	NA	NA	36132575	36133815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_36132821_36132929
ENSMUST00000003642.7	chr17	-	2322	16	FSM	ENSMUSG00000003546.11	ENSMUST00000003642.7	2322	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTTGTGTTCGGAGTC	NA	NA	NA	NA	NA	NA	NA	NA	46956070	46941556	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956006
ENSMUST00000003643.3	chr7	+	1235	7	FSM	ENSMUSG00000030399.3	ENSMUST00000003643.3	1235	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGAGTGTGCCAGCTAC	NA	NA	NA	NA	NA	NA	NA	NA	19144987	19155509	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_19145072_19148821_19148977_19149325_19149459_19150643_19150816_19153363_19153488_19154031_19154222_19155132
ENSMUST00000003645.9	chr7	+	1375	10	FSM	ENSMUSG00000003549.10	ENSMUST00000003645.9	1375	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGGCTCTGCGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	19078702	19090449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089025_19089098_19089217_19089287_19090343
ENSMUST00000003720.5	chr5	-	2996	18	FSM	ENSMUSG00000003623.5	ENSMUST00000003720.5	2996	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGTTGAAAACAATGATTGT	NA	NA	NA	NA	NA	NA	NA	NA	9047324	9016032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_9016973_9018646_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9023717_9023944_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
ENSMUST00000003720.5-0	chr5	-	2652	18	FSM	ENSMUSG00000003623.5	ENSMUST00000003720.5	2996	18	140	204	140	-204	multi-exon	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAAGCATTTCCATTTGA	NA	NA	NA	NA	NA	NA	NA	NA	9047184	9016236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_9016973_9018646_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9023717_9023944_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
ENSMUST00000003762.8	chr17	-	2095	5	FSM	ENSMUSG00000003665.8	ENSMUST00000003762.8	2095	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTCCCACTTTGTCACT	NA	NA	NA	NA	NA	NA	NA	NA	18075450	18063584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_18064562_18067812_18067946_18068409_18068636_18070202_18070911_18075399
ENSMUST00000003850.8	chr7	-	3247	7	FSM	ENSMUSG00000003752.10	ENSMUST00000003850.8	3247	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGGGTATTTTCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	26928053	26906596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_26907870_26911736_26911809_26912384_26912487_26913800_26914006_26916376_26916591_26919024_26919128_26926775
ENSMUST00000003860.13	chr7	+	2181	15	FSM	ENSMUSG00000003762.14	ENSMUST00000003860.13	2181	15	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTTTCTCTCTGTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	26932447	26957375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_26932599_26932889_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
ENSMUST00000003870.15	chr19	+	2627	6	FSM	ENSMUSG00000025025.15	ENSMUST00000003870.15	2627	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGAGTTGTGTGTTAATGT	NA	NA	NA	NA	NA	NA	NA	NA	53298948	53361724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_53299405_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
ENSMUST00000003964.17	chr7	+	2418	16	FSM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	33	1227	0	-455	multi-exon	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCAGTGCTCCTCTCG	NA	NA	NA	NA	NA	NA	NA	NA	45084300	45104816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_45084595_45085955_45086138_45087525_45087718_45088902_45089089_45089328_45089474_45091846_45091965_45092339_45092461_45092951_45093059_45094055_45094116_45094202_45094282_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
ENSMUST00000004050.7	chr11	+	1416	7	FSM	ENSMUSG00000003948.18	ENSMUST00000004050.7	2677	7	0	1261	0	-1261	multi-exon	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCATGTTTCATCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	90140301	90168154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_90140562_90148345_90148428_90150652_90150814_90155328_90155404_90156870_90156973_90158337_90158408_90167488
ENSMUST00000004057.9	chr16	-	718	5	FSM	ENSMUSG00000003955.9	ENSMUST00000004057.9	718	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATAGTATTATCTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	35891885	35864130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891839
ENSMUST00000004072.10	chr15	+	851	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	76788277	76790514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
ENSMUST00000004094.15	chr13	+	1499	17	FSM	ENSMUSG00000003992.16	ENSMUST00000004094.15	3957	17	77	2381	36	-120	multi-exon	TRUE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGACTTTTATGCCATCC	NA	NA	NA	NA	NA	NA	NA	NA	91609245	91849167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91790420_91790511_91812236_91812297_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
ENSMUST00000004134.11-1	chr3	+	675	8	FSM	ENSMUSG00000004032.11	ENSMUST00000004134.11	945	8	133	137	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGAGCTCGCTGCTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	107803269	107805865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_107803315_107803613_107803690_107803941_107804007_107804603_107804686_107804777_107804879_107805282_107805379_107805481_107805593_107805766
ENSMUST00000004140.11	chr3	-	1289	8	FSM	ENSMUSG00000058135.13	ENSMUST00000004140.11	1289	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1036	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGAGTTGTGTCTTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	107925289	107919570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_107920095_107922068_107922180_107922260_107922357_107923643_107923745_107923834_107923917_107924199_107924265_107924666_107924743_107925055
ENSMUST00000004173.12	chr16	-	2115	6	FSM	ENSMUSG00000004071.14	ENSMUST00000004173.12	3953	6	60	1778	0	100	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACATTTAAGAACCCAATT	NA	NA	NA	NA	NA	NA	NA	NA	4607794	4585102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4607694
ENSMUST00000004200.9	chr9	+	791	7	FSM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	30	290	0	-78	multi-exon	FALSE	canonical	NA	NA	NA	NA	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGAATTTCACAAGAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	14411942	14421583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
ENSMUST00000004208.7	chr2	+	2519	5	FSM	ENSMUSG00000004105.9	ENSMUST00000004208.7	3339	5	48	772	48	-772	multi-exon	FALSE	canonical	NA	NA	NA	NA	709	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTGCTCACTGGAAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	33106128	33136957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_33106466_33118186_33119045_33132211_33132406_33133690_33133962_33136098
ENSMUST00000004375.16	chr6	+	1318	10	FSM	ENSMUSG00000004264.18	ENSMUST00000004375.16	1318	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	124689298	124693913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692994_124693387_124693394_124693568
ENSMUST00000004381.14	chr6	+	1514	13	FSM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	188	579	188	-579	multi-exon	TRUE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCACAGCACTCCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	124640177	124680802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
ENSMUST00000004396.13	chr6	+	703	2	FSM	ENSMUSG00000004285.13	ENSMUST00000004396.13	703	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTGGTATGGATACG	NA	NA	NA	NA	NA	NA	NA	NA	29467716	29470511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_29467974_29470065
ENSMUST00000004508.13	chr11	-	2003	5	FSM	ENSMUSG00000004394.13	ENSMUST00000004508.13	2003	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTCTCCCTTTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	6224870	6220368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397_6224499_6224673
ENSMUST00000004574.14	chr16	+	1927	10	FSM	ENSMUSG00000004460.18	ENSMUST00000004574.14	1927	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGTATCTGTCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	22676594	22691138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_22676860_22681291_22681449_22684203_22684302_22685669_22685803_22687460_22687604_22687870_22687954_22688165_22688224_22689320_22689433_22689689_22689850_22690420
ENSMUST00000004576.8	chr16	-	2803	8	FSM	ENSMUSG00000004462.8	ENSMUST00000004576.8	2803	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGCCAGAGTTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	22676419	22631963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676094
ENSMUST00000004614.15	chr7	+	1359	8	FSM	ENSMUSG00000058638.15	ENSMUST00000004614.15	3591	8	276	1956	276	-1304	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCCAAGTCTCAAGACCAA	NA	NA	NA	NA	NA	NA	NA	NA	12568963	12582548	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_12569092_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
ENSMUST00000004774.4	chr6	+	2627	4	FSM	ENSMUSG00000004655.6	ENSMUST00000004774.4	2627	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	452	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGGCCTCCTGTGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	55313416	55325540	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_55313860_55322390_55322556_55322797_55322879_55323602
ENSMUST00000004786.10	chr10	-	1148	7	FSM	ENSMUSG00000004667.19	ENSMUST00000004786.10	1148	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2473	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	79875629	79871782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
ENSMUST00000004868.6	chr11	-	1411	4	FSM	ENSMUSG00000004748.6	ENSMUST00000004868.6	1411	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTTCATTTCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	4045445	4041479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_4042300_4043800_4044034_4044388_4044517_4045215
ENSMUST00000004910.12	chr12	+	1605	8	FSM	ENSMUSG00000004788.12	ENSMUST00000004910.12	1605	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1053	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGGAAAGGGCCCCAAAC	NA	NA	NA	NA	NA	NA	NA	NA	85266254	85273402	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85270154_85270293_85271328_85271396_85272776
ENSMUST00000004913.7	chr12	-	1582	7	FSM	ENSMUSG00000004791.8	ENSMUST00000004913.7	1582	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGTCTAGGATGTATGT	NA	NA	NA	NA	NA	NA	NA	NA	85224070	85213412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_85214189_85216131_85216192_85216284_85216315_85218148_85218229_85218433_85218631_85222529_85222570_85223671
ENSMUST00000004990.14	chr17	+	2966	12	FSM	ENSMUSG00000053436.16	ENSMUST00000004990.14	3562	12	13	583	0	-581	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTTCTGAATTTTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	28910315	28966797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_28910830_28932747_28932878_28934356_28934416_28943717_28943830_28944466_28944497_28944770_28944819_28947330_28947446_28947877_28947950_28959653_28959734_28960761_28960841_28963956_28964131_28965244
ENSMUST00000005003.12	chr1	-	3510	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCTGTTAGAGCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	181669944	181642899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
ENSMUST00000005016.16	chr3	-	2492	8	FSM	ENSMUSG00000004896.17	ENSMUST00000005016.16	2492	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTGGAGCCTGTGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	87837451	87830211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_87831220_87831650_87831836_87832253_87832739_87834037_87834182_87834361_87834425_87834869_87835063_87835230_87835356_87837162
ENSMUST00000005019.6	chr3	+	931	4	FSM	ENSMUSG00000004885.6	ENSMUST00000005019.6	931	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	473	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCTGTGGCTCCCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	87855972	87860683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_87856218_87859421_87859601_87859784_87859902_87860293
ENSMUST00000005051.6	chr7	+	1766	8	FSM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	NA	NA	NA	NA	NA	NA	NA	46496554	46505050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_46496813_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
ENSMUST00000005072.10	chr5	+	2562	11	FSM	ENSMUSG00000004947.16	ENSMUST00000005072.10	2562	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCATCTGTTGGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	136023730	136061718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_136023821_136025143_136025307_136038867_136039211_136040864_136041502_136050608_136050713_136055323_136055462_136057355_136057427_136057917_136058077_136059333_136059496_136060039_136060130_136061113
ENSMUST00000005077.7	chr5	+	503	3	FSM	ENSMUSG00000004951.11	ENSMUST00000005077.7	903	3	99	301	0	-277	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTAGTGTCCTCTTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	135916871	135918116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_135917289_135917902_135917967_135918094
ENSMUST00000005185.8	chr10	+	387	3	FSM	ENSMUSG00000005054.8	ENSMUST00000005185.8	603	3	0	216	0	-216	multi-exon	TRUE	canonical	NA	NA	NA	NA	365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAGGCACGATGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	78261502	78263240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_78261692_78262760_78262863_78263144
ENSMUST00000005255.9	chr15	+	943	5	FSM	ENSMUSG00000005124.11	ENSMUST00000005255.9	5097	5	188	3966	0	-220	multi-exon	TRUE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGACCCAAGTACTGCGG	NA	NA	NA	NA	NA	NA	NA	NA	66763356	66791084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_66763484_66778249_66778530_66784677_66784939_66789125_66789320_66791003
ENSMUST00000005256.14	chr15	-	2889	16	FSM	ENSMUSG00000005125.14	ENSMUST00000005256.14	2889	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTCTTTTCCTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	66841489	66801166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809715_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66814913_66815001_66815852_66815914_66816624_66816688_66818280_66818402_66820227_66820334_66831210_66831247_66832320_66832402_66841352
ENSMUST00000005279.8	chr14	+	2776	4	FSM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	463	113	0	-113	multi-exon	FALSE	canonical	NA	NA	NA	NA	258	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTATGCAAATATCAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	99536589	99552359	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_99536659_99538816_99539691_99540853_99540914_99550586
ENSMUST00000005292.15	chr8	+	1500	6	FSM	ENSMUSG00000005161.16	ENSMUST00000005292.15	1500	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCTAGGCTCTGACCC	NA	NA	NA	NA	NA	NA	NA	NA	85696239	85701463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ENSMUST00000005336.9	chr11	-	2313	11	FSM	ENSMUSG00000005204.13	ENSMUST00000005336.9	2313	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	69572672	69563940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
ENSMUST00000005365.15	chr2	-	1352	7	FSM	ENSMUSG00000005233.17	ENSMUST00000005365.15	1352	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	69036538	69024238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036407
ENSMUST00000005394.13	chr16	+	1112	12	FSM	ENSMUSG00000005262.14	ENSMUST00000005394.13	1996	12	27	857	27	64	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTTGTTTAAAGTTACC	NA	NA	NA	NA	NA	NA	NA	NA	18631070	18653154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
ENSMUST00000005548.8	chr8	+	1069	5	FSM	ENSMUSG00000005413.9	ENSMUST00000005548.8	1569	5	0	500	0	-500	multi-exon	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGCTCTCTTCTCTTGGG	NA	NA	NA	NA	NA	NA	NA	NA	75820248	75826717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_75820401_75822483_75822605_75823477_75823970_75825393_75825494_75826513
ENSMUST00000005606.8	chr8	+	2276	10	FSM	ENSMUSG00000005469.11	ENSMUST00000005606.8	2276	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCGCTGGTTTTCCCGA	NA	NA	NA	NA	NA	NA	NA	NA	84699621	84723072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_84699862_84707402_84707465_84707800_84707930_84713465_84713565_84714911_84714995_84717056_84717184_84717270_84717367_84717491_84717615_84721423_84721589_84721920
ENSMUST00000005607.9	chr8	+	1788	4	FSM	ENSMUSG00000005470.9	ENSMUST00000005607.9	1788	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3787	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGCTTTTTTCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	84682135	84696826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_84682567_84691659_84691776_84694462_84694640_84695762
ENSMUST00000005620.10	chr8	+	2996	3	FSM	ENSMUSG00000005483.11	ENSMUST00000005620.10	2996	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATACGAGGTGCTCGGCT	NA	NA	NA	NA	NA	NA	NA	NA	84334821	84339282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_84335172_84336442_84337024_84337217
ENSMUST00000005647.4	chr2	-	1046	7	FSM	ENSMUSG00000005510.10	ENSMUST00000005647.4	1046	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1368	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	90735171	90724979	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733190_90733289_90734766_90734833_90734927
ENSMUST00000005826.9	chr10	+	2926	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	1245	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGCTTGCTCTTACGTA	NA	NA	NA	NA	NA	NA	NA	NA	128173602	128198348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
ENSMUST00000005830.15-1	chr3	+	714	7	FSM	ENSMUSG00000005687.15	ENSMUST00000005830.15	1467	7	48	705	48	-705	multi-exon	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCCAACAAGGAAAACATCC	NA	NA	NA	NA	NA	NA	NA	NA	103079018	103085763	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
ENSMUST00000005907.12	chr1	+	1087	8	FSM	ENSMUSG00000005763.16	ENSMUST00000005907.12	1632	8	34	511	0	47	multi-exon	TRUE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGAGGCAGGTACAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	165616291	165689124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_165616456_165682734_165682839_165683968_165684026_165684984_165685066_165686011_165686048_165686787_165686845_165687357_165687394_165688572
ENSMUST00000005952.11	chr2	-	4147	7	FSM	ENSMUSG00000005802.13	ENSMUST00000005952.11	5458	7	565	746	565	-746	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATCAGTGACATCTCACT	NA	NA	NA	NA	NA	NA	NA	NA	122543994	122523898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_122527254_122527917_122528053_122528870_122528977_122529783_122529989_122531318_122531473_122536314_122536462_122543949
ENSMUST00000005953.11	chr2	+	1804	10	FSM	ENSMUSG00000005803.15	ENSMUST00000005953.11	1804	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	364	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATTTGAGAAAATCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	122607156	122651489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_122607360_122626863_122627115_122629377_122629549_122634269_122634324_122639957_122640153_122641681_122641892_122645841_122646026_122649492_122649561_122649873_122650053_122651200
ENSMUST00000005954.9	chr2	+	1050	5	FSM	ENSMUSG00000005804.15	ENSMUST00000005954.9	3484	5	56	2378	56	-2378	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATTTTTCCAGCCCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	122580478	122589017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_122580625_122584508_122584651_122586045_122586134_122587974_122588062_122588430
ENSMUST00000006105.7	chr11	+	2808	7	FSM	ENSMUSG00000005951.14	ENSMUST00000006105.7	2808	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTTTGATGAACACACAC	NA	NA	NA	NA	NA	NA	NA	NA	73090285	73115337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_73090507_73094747_73094890_73104156_73104341_73104880_73105034_73105790_73105967_73108624_73108826_73113606
ENSMUST00000006137.9	chr16	-	2320	18	FSM	ENSMUSG00000005981.12	ENSMUST00000006137.9	2320	18	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGACGTTTTCTCTGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	3895691	3857834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
ENSMUST00000006178.5	chr7	+	1630	12	FSM	ENSMUSG00000006021.6	ENSMUST00000006178.5	1630	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTTTGTCTGGCAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	15853819	15861441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_15854107_15854414_15854498_15854636_15854722_15854794_15854850_15856959_15857036_15857124_15857199_15857696_15857807_15857879_15857958_15858641_15858718_15859637_15859774_15859861_15860033_15861042
ENSMUST00000006181.7	chr7	+	862	11	FSM	ENSMUSG00000006024.14	ENSMUST00000006181.7	2517	11	180	1475	-38	-513	multi-exon	TRUE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTACCACCATGCTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	15832562	15850425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15846556_15847036_15847115_15847274_15847331_15847400_15847486_15848045_15848151_15849127_15849197_15849524_15849576_15850388
ENSMUST00000006254.6	chr7	-	916	6	FSM	ENSMUSG00000006095.13	ENSMUST00000006254.6	1416	6	298	202	298	-101	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTTGAATGCCAGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	29931399	29923757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_29923773_29923897_29923971_29926268_29926461_29927028_29927126_29930550_29930695_29931004
ENSMUST00000006367.8	chr7	+	2041	9	FSM	ENSMUSG00000006205.14	ENSMUST00000006367.8	2041	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1445	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGCGTGCTTCTTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	130537932	130587390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_130538474_130563242_130563343_130563702_130563908_130581030_130581226_130581681_130581715_130583386_130583502_130583966_130584025_130585389_130585486_130586692
ENSMUST00000006381.11	chr4	-	3101	9	FSM	ENSMUSG00000006219.13	ENSMUST00000006381.11	3101	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	141325535	141303372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141325393
ENSMUST00000006391.5	chr13	+	1778	7	FSM	ENSMUSG00000045827.11	ENSMUST00000006391.5	3397	7	0	1619	0	-1619	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAGTAAAATTTTAAAAATA	NA	NA	NA	NA	NA	NA	NA	NA	33188523	33200319	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_33188679_33190515_33190694_33191988_33192127_33192750_33192869_33194669_33194813_33197844_33198001_33199429
ENSMUST00000006392.3	chr13	+	1129	7	FSM	ENSMUSG00000021403.4	ENSMUST00000006392.3	3253	7	0	2124	0	-2124	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGTTTATTCACAAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	33211398	33223743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_33211584_33213434_33213613_33216898_33217037_33217509_33217628_33219498_33219642_33221954_33222111_33223532
ENSMUST00000006424.8	chr5	+	1657	6	FSM	ENSMUSG00000006262.16	ENSMUST00000006424.8	2705	6	0	1048	0	-1048	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGTCTTTTTCCATCTC	NA	NA	NA	NA	NA	NA	NA	NA	88868729	88904800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_88868981_88891162_88891330_88892915_88893010_88897383_88897518_88901018_88901183_88903953
ENSMUST00000006435.8	chr8	+	2313	14	FSM	ENSMUSG00000006273.15	ENSMUST00000006435.8	2825	14	143	369	143	-369	multi-exon	TRUE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGCCCTCCAGATCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	69541440	69565994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
ENSMUST00000006462.14	chr1	-	1817	11	FSM	ENSMUSG00000006299.14	ENSMUST00000006462.14	1817	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1015	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGTGTGCATTTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	74323897	74318998	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323201_74323661
ENSMUST00000006478.10	chr7	-	870	7	FSM	ENSMUSG00000006315.10	ENSMUST00000006478.10	870	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTTGTTATGTCCATCT	NA	NA	NA	NA	NA	NA	NA	NA	30428965	30427129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428142_30428626_30428697_30428768
ENSMUST00000006496.15	chr7	+	751	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	3706991	3709896	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
ENSMUST00000006523.12	chr12	+	445	5	FSM	ENSMUSG00000006360.12	ENSMUST00000006523.12	445	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9558	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCCTGTGTTTTTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	113115631	113117497	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
ENSMUST00000006559.14	chr9	+	1368	2	FSM	ENSMUSG00000035274.14	ENSMUST00000006559.14	3603	2	0	2235	0	-2235	multi-exon	TRUE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGGTCCTTCACAACTCC	NA	NA	NA	NA	NA	NA	NA	NA	85724432	85726858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_85724646_85725703
ENSMUST00000006562.6	chr4	+	910	9	FSM	ENSMUSG00000006395.17	ENSMUST00000006562.6	910	9	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTGTATATTACAG	NA	NA	NA	NA	NA	NA	NA	NA	118217210	118219941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_118217429_118217502_118217535_118217536_118217587_118218812_118218928_118219070_118219150_118219237_118219288_118219387_118219458_118219559_118219695_118219780
ENSMUST00000006565.13	chr4	-	1793	10	FSM	ENSMUSG00000006398.16	ENSMUST00000006565.13	1793	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	2349	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCCAGCATCCTTCCTAC	NA	NA	NA	NA	NA	NA	NA	NA	118294549	118290097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_118290339_118290677_118290796_118291947_118292074_118292669_118292899_118292973_118293069_118293165_118293363_118293456_118293586_118293706_118293804_118293890_118294040_118294137
ENSMUST00000006646.15	chr2	+	2035	15	FSM	ENSMUSG00000006476.20	ENSMUST00000006646.15	2922	15	51	836	0	-835	multi-exon	TRUE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCAGCATTGGGGATCCC	NA	NA	NA	NA	NA	NA	NA	NA	24944446	24952057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_24944684_24945009_24945072_24945647_24946149_24947112_24947189_24948264_24948334_24949032_24949086_24949616_24949707_24950150_24950276_24950490_24950575_24950703_24950738_24950825_24950897_24951070_24951151_24951273_24951377_24951504_24951581_24951683
ENSMUST00000006669.6	chr2	+	1774	11	FSM	ENSMUSG00000006494.12	ENSMUST00000006669.6	5185	11	122	3289	122	-3289	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAAATGAATTGATCATGG	NA	NA	NA	NA	NA	NA	NA	NA	71703689	71730913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_71703910_71705749_71705892_71710382_71710455_71713766_71713952_71714186_71714277_71716325_71716404_71717725_71717803_71719239_71719339_71726032_71726144_71727990_71728105_71730327
ENSMUST00000006701.8	chr14	+	2019	8	FSM	ENSMUSG00000006526.14	ENSMUST00000006701.8	3742	8	4	1719	4	-1719	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCTCAGCCTTGACTGCC	NA	NA	NA	NA	NA	NA	NA	NA	30547550	30597448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_30547848_30584836_30584886_30586385_30586482_30588579_30588702_30592707_30592821_30593437_30593516_30594506_30594657_30596334
ENSMUST00000006716.8	chr1	+	2071	4	FSM	ENSMUSG00000033227.8	ENSMUST00000006716.8	2071	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTGTGAGGAACCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	74811050	74824481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_74811382_74821260_74821482_74821718_74822054_74823297
ENSMUST00000006764.9	chr8	-	849	5	FSM	ENSMUSG00000006589.9	ENSMUST00000006764.9	849	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGCTTCTCCTCAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	123303629	123301375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123303253_123303361_123303491
ENSMUST00000006774.11	chr7	+	2736	15	FSM	ENSMUSG00000006599.14	ENSMUST00000006774.11	2736	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTCTCTTGGAGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	46445526	46473224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
ENSMUST00000006814.9	chr5	+	1309	10	FSM	ENSMUSG00000006638.16	ENSMUST00000006814.9	1309	10	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGAGCTGAGGTTCCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	31107449	31112433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_31107593_31110228_31110390_31110686_31110870_31111010_31111057_31111222_31111336_31111434_31111499_31111499_31111610_31111748_31111798_31111877_31112044_31112159
ENSMUST00000006853.11	chr9	-	1841	9	FSM	ENSMUSG00000006675.11	ENSMUST00000006853.11	1841	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCCCGCTTGGGGGAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	108474866	108456060	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_108456508_108456914_108457039_108457214_108457306_108457917_108458104_108459040_108459204_108460045_108460143_108460840_108461032_108474097_108474180_108474406
ENSMUST00000006900.7	chr13	-	721	3	FSM	ENSMUSG00000006717.8	ENSMUST00000006900.7	721	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	874	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAAGGAAGTATTTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	25015500	25001930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_25002175_25004697_25004883_25015208
ENSMUST00000006915.14	chr10	+	1791	6	FSM	ENSMUSG00000006732.15	ENSMUST00000006915.14	1791	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTGAGTGTTTGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	126877800	126882234	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147
ENSMUST00000006956.9	chr7	-	555	4	FSM	ENSMUSG00000040026.9	ENSMUST00000006956.9	555	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCGCTGTCACTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	46365124	46361421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_46361689_46362012_46362152_46364433_46364529_46365070
ENSMUST00000007007.14	chr17	-	2051	8	FSM	ENSMUSG00000060475.14	ENSMUST00000007007.14	2051	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTTTGTTTTTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	13211146	13185685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_13186939_13188291_13188447_13194182_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13210963
ENSMUST00000007012.6	chr17	+	4026	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	43	1792	43	-1792	multi-exon	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGTCTGATACTTATGTG	NA	NA	NA	NA	NA	NA	NA	NA	13226746	13237229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
ENSMUST00000007012.6-1	chr17	+	4048	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	179	1634	179	-1634	multi-exon	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGCAGAGATTTGTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	13226882	13237387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
ENSMUST00000007139.6	chr9	+	676	4	FSM	ENSMUSG00000006941.6	ENSMUST00000007139.6	1035	4	0	359	0	-359	multi-exon	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCGAGTTTCTTAAATGGT	NA	NA	NA	NA	NA	NA	NA	NA	120321556	120324037	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_120321908_120323172_120323337_120323600_120323703_120323978
ENSMUST00000007251.14	chr17	+	1945	20	FSM	ENSMUSG00000007036.16	ENSMUST00000007251.14	1945	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTGCTTATGAGATGT	NA	NA	NA	NA	NA	NA	NA	NA	35308266	35321963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35308433_35309344_35309402_35309997_35310065_35310546_35310634_35313226_35313313_35315279_35315354_35315457_35315581_35317669_35317785_35317874_35317977_35319310_35319375_35319614_35319665_35319937_35320062_35320217_35320323_35320517_35320582_35320803_35320861_35320945_35321009_35321121_35321199_35321273_35321373_35321450_35321498_35321645
ENSMUST00000007253.6	chr17	+	1853	6	FSM	ENSMUSG00000007038.6	ENSMUST00000007253.6	2474	6	61	560	61	-560	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTGCCTCCTGGAGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	35150289	35154337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35150524_35150891_35151085_35151541_35151805_35152978_35153162_35153258_35153482_35153580
ENSMUST00000007255.13	chr17	+	1342	7	FSM	ENSMUSG00000007039.13	ENSMUST00000007255.13	1342	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGGGCTGTGACTGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	35278010	35281067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
ENSMUST00000007257.10	chr17	+	1466	6	FSM	ENSMUSG00000007041.10	ENSMUST00000007257.10	1466	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	7675	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGCTTAAAGTGTAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	35268941	35277725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35269463_35271410_35271521_35271756_35271883_35272008_35272116_35274202_35274385_35277305
ENSMUST00000007266.14	chr17	+	873	5	FSM	ENSMUSG00000007050.18	ENSMUST00000007266.14	873	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	35201104	35204867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35201344_35201595_35201664_35204084_35204116_35204224_35204285_35204392
ENSMUST00000007799.13	chr6	+	903	3	FSM	ENSMUSG00000007655.17	ENSMUST00000007799.13	2522	3	10	1609	0	196	multi-exon	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAAGATGATTTGAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	17306343	17339714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_17306479_17307879_17308045_17339111
ENSMUST00000007800.8	chr9	+	4046	3	FSM	ENSMUSG00000007656.14	ENSMUST00000007800.8	4046	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGTTTTGTCTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	74944999	74967595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_74945244_74959514_74959638_74963916
ENSMUST00000007803.12	chr2	-	2417	3	FSM	ENSMUSG00000007659.19	ENSMUST00000007803.12	2417	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTTGGCTCTGCGC	NA	NA	NA	NA	NA	NA	NA	NA	152673648	152622587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_152624203_152671346_152672023_152673522
ENSMUST00000007865.7	chr8	-	1356	5	FSM	ENSMUSG00000007721.7	ENSMUST00000007865.7	1356	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1536	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCATGTCTGTATGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	71326579	71320870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_71321290_71321380_71321496_71321576_71321752_71322548_71322719_71326102
ENSMUST00000007884.15	chr17	+	685	4	FSM	ENSMUSG00000023882.16	ENSMUST00000007884.15	2300	4	25	1590	25	-1590	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCTCTCTTGACTCATCA	NA	NA	NA	NA	NA	NA	NA	NA	21643519	21653826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_21643824_21647998_21648091_21650456_21650584_21653664
ENSMUST00000007921.9	chr11	-	813	2	FSM	ENSMUSG00000007777.10	ENSMUST00000007921.9	813	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	888	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTATGTGTATGAATGCT	NA	NA	NA	NA	NA	NA	NA	NA	51579480	51576212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_51576920_51579374
ENSMUST00000007949.4	chr1	+	1329	2	FSM	ENSMUSG00000007805.5	ENSMUST00000007949.4	1329	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGCGTGTCCCCTCTGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	91729182	91775750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_91729872_91775110
ENSMUST00000007949.4-0	chr1	+	949	2	FSM	ENSMUSG00000007805.5	ENSMUST00000007949.4	1329	2	9	371	0	-358	multi-exon	FALSE	canonical	NA	NA	NA	NA	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATTTGTAAGGATATATA	NA	NA	NA	NA	NA	NA	NA	NA	91729191	91775379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_91729872_91775110
ENSMUST00000008021.3	chr11	+	728	2	FSM	ENSMUSG00000007877.3	ENSMUST00000008021.3	948	2	0	220	0	46	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGGGCACTAGGAGTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	98274636	98275559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_98274783_98274977
ENSMUST00000008179.7	chrX	+	185	2	FSM	ENSMUSG00000008035.13	ENSMUST00000008179.7	2019	2	164	1670	-59	-1662	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGCCAAAGATAAGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	10583792	10584259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_10583944_10584225
ENSMUST00000008280.14	chr1	-	1563	6	FSM	ENSMUSG00000008136.15	ENSMUST00000008280.14	1563	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1471	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTGTGTGGACTAATGAT	NA	NA	NA	NA	NA	NA	NA	NA	43203121	43162233	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_43162826_43167403_43167591_43170811_43170982_43180857_43181033_43192235_43192415_43202861
ENSMUST00000008477.13	chr2	+	2061	7	FSM	ENSMUSG00000008333.13	ENSMUST00000008477.13	2061	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAACTATTCTGACAGA	NA	NA	NA	NA	NA	NA	NA	NA	142904958	142914773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_142905019_142906461_142906551_142907095_142907269_142910180_142910322_142911293_142911345_142912807_142912897_142913315
ENSMUST00000008528.8	chr7	+	424	2	FSM	ENSMUSG00000008384.9	ENSMUST00000008528.8	1233	2	0	809	0	-622	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGCCGCCTGAGCC	NA	NA	NA	NA	NA	NA	NA	NA	27186334	27188932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_27186504_27188677
ENSMUST00000008542.12	chr10	-	4212	5	FSM	ENSMUSG00000008398.17	ENSMUST00000008542.12	4212	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTTTGTTCCCTTCCATT	NA	NA	NA	NA	NA	NA	NA	NA	93146997	93083275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_93085971_93090550_93090674_93100741_93101543_93120630_93120840_93146613
ENSMUST00000008573.9	chr9	-	2063	8	FSM	ENSMUSG00000008429.9	ENSMUST00000008573.9	2781	8	122	596	122	-596	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTAAGCTTCTCATG	NA	NA	NA	NA	NA	NA	NA	NA	25062994	25020023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_25020302_25020735_25020851_25021706_25022031_25025116_25025240_25036167_25036320_25041831_25041946_25044490_25044569_25062115
ENSMUST00000008594.9-1	chr8	+	704	5	FSM	ENSMUSG00000008450.9	ENSMUST00000008594.9	948	5	31	213	31	138	multi-exon	FALSE	canonical	NA	NA	NA	NA	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCATGCCTTGGAAAGACT	NA	NA	NA	NA	NA	NA	NA	NA	106587242	106605749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603241_106605436
ENSMUST00000008626.10	chr17	-	1195	4	FSM	ENSMUSG00000008482.10	ENSMUST00000008626.10	1195	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTTCTCTTGTACTTA	NA	NA	NA	NA	NA	NA	NA	NA	24937037	24934812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_24935684_24936039_24936137_24936436_24936583_24936956
ENSMUST00000008633.15	chr4	-	3730	7	FSM	ENSMUSG00000008489.19	ENSMUST00000008633.15	3730	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGTATCTTTAAATACAT	NA	NA	NA	NA	NA	NA	NA	NA	91260291	91138999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_91141808_91142377_91142417_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91260136
ENSMUST00000008684.11	chr6	+	472	4	FSM	ENSMUSG00000008540.12	ENSMUST00000008684.11	1167	4	238	457	0	-86	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCTTGGCATTTTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	138117551	138133296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_138117605_138124656_138124814_138127765_138127861_138133129
ENSMUST00000008812.9	chr17	-	560	5	FSM	ENSMUSG00000008668.16	ENSMUST00000008812.9	560	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	34174651	34170972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051_34174151_34174591
ENSMUST00000008826.14	chrX	+	799	7	FSM	ENSMUSG00000008682.14	ENSMUST00000008826.14	799	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	NA	NA	NA	NA	NA	NA	NA	73314417	73316741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_73314481_73314584_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
ENSMUST00000009036.11	chr8	-	1354	9	FSM	ENSMUSG00000008892.13	ENSMUST00000009036.11	1354	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCATCTGACTTCTTAG	NA	NA	NA	NA	NA	NA	NA	NA	23083774	23067101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
ENSMUST00000009039.6	chr15	-	570	4	FSM	ENSMUSG00000058600.14	ENSMUST00000009039.6	570	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGTGTCTGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	34443368	34440655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170
ENSMUST00000009102.9	chr3	+	848	6	FSM	ENSMUSG00000008958.15	ENSMUST00000009102.9	1456	6	51	557	51	-557	multi-exon	FALSE	canonical	NA	NA	NA	NA	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAACGTTTGAAGAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	95018383	95029805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_95018526_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
ENSMUST00000009219.3	chr11	-	2628	5	FSM	ENSMUSG00000009075.3	ENSMUST00000009219.3	2628	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGCCCTGGTTCTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	4696778	4686891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_4688949_4689123_4689278_4689553_4689667_4690368_4690513_4696618
ENSMUST00000009220.5	chr11	+	792	6	FSM	ENSMUSG00000009076.11	ENSMUST00000009220.5	792	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	4654677	4687669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_4654722_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUST00000009241.7	chr16	-	1858	9	FSM	ENSMUSG00000009097.11	ENSMUST00000009241.7	1858	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTATTCTTTTGCAT	NA	NA	NA	NA	NA	NA	NA	NA	18409421	18400453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_18401207_18401473_18401575_18401656_18401725_18402168_18402325_18402833_18403006_18403784_18403887_18405285_18405629_18406736_18406857_18409378
ENSMUST00000009340.10	chr1	-	1785	7	FSM	ENSMUSG00000026536.10	ENSMUST00000009340.10	1785	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGCAGTGTGTCATTTG	NA	NA	NA	NA	NA	NA	NA	NA	173740612	173723910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_173724210_173726909_173727099_173729185_173729609_173733038_173733198_173733697_173733895_173735162_173735448_173740379
ENSMUST00000009356.11	chr1	+	1970	8	FSM	ENSMUSG00000062345.11	ENSMUST00000009356.11	1970	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTTGTTTTAGAAACGT	NA	NA	NA	NA	NA	NA	NA	NA	107439152	107453328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_107439209_107443193_107443371_107447381_107447502_107449876_107450006_107450421_107450540_107450794_107450938_107451526_107451692_107452266
ENSMUST00000009358.9	chr2	-	1382	5	FSM	ENSMUSG00000009214.10	ENSMUST00000009358.9	1382	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTCTGTCTGCTGAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	26962191	26951647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_26952350_26952713_26952831_26956302_26956452_26957364_26957480_26961892
ENSMUST00000009411.9	chr6	+	1722	5	FSM	ENSMUSG00000052763.8	ENSMUST00000009411.9	2801	5	0	1079	0	-1079	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTAAGGTTGCCAGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	47897409	47908494	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_47897684_47903440_47903831_47903953_47904081_47905983_47906065_47907644
ENSMUST00000009425.7	chr6	-	731	6	FSM	ENSMUSG00000009281.7	ENSMUST00000009425.7	731	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTGTTGTTCTCCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	48549622	48546629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_48546740_48546874_48546997_48547177_48547274_48548716_48548822_48549021_48549225_48549527
ENSMUST00000009530.5	chrX	+	833	6	FSM	ENSMUSG00000001131.12	ENSMUST00000009530.5	833	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTCTGTATAGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	20736459	20740974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_20736564_20737269_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
ENSMUST00000009530.5-0	chrX	+	715	6	FSM	ENSMUSG00000001131.12	ENSMUST00000009530.5	833	6	0	118	0	-116	multi-exon	FALSE	canonical	NA	NA	NA	NA	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGGCCCGATGACCTGA	NA	NA	NA	NA	NA	NA	NA	NA	20736459	20740856	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_20736564_20737269_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
ENSMUST00000009699.16	chr2	-	1733	7	FSM	ENSMUSG00000009555.17	ENSMUST00000009699.16	1733	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGCGTTTCCTGTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	32602796	32597449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_32598302_32599478_32599628_32599784_32599957_32600054_32600222_32600488_32600580_32602042_32602125_32602576
ENSMUST00000009707.14	chr2	+	937	5	FSM	ENSMUSG00000009563.17	ENSMUST00000009707.14	1536	5	85	514	74	-209	multi-exon	FALSE	canonical	NA	NA	NA	NA	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTCTGAGAAGCCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	32647330	32651742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_32647463_32648682_32648949_32649538_32649715_32650600_32650729_32651507
ENSMUST00000009728.13	chr15	+	680	4	FSM	ENSMUSG00000022415.13	ENSMUST00000009728.13	819	4	10	129	0	-129	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCACTAGGACAGGAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	79975544	79997513	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_79975694_79994644_79994883_79995799_79995946_79997366
ENSMUST00000009831.14	chr7	-	803	9	FSM	ENSMUSG00000009687.15	ENSMUST00000009831.14	803	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTGTTCAGATAAATCCAC	NA	NA	NA	NA	NA	NA	NA	NA	30741571	30732187	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30737245_30737357_30738462_30738520_30739607_30739683_30740821_30740883_30741514
ENSMUST00000010189.3	chr9	+	2194	2	FSM	ENSMUSG00000010045.3	ENSMUST00000010189.3	2194	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	599	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTTGTGCAGCCCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	107411143	107415872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_107412529_107415063
ENSMUST00000010191.13	chr9	+	1893	4	FSM	ENSMUSG00000010047.13	ENSMUST00000010191.13	1893	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	383	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCTTGTCTTTTTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	107446315	107449975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_107446433_107447302_107448270_107448690_107448781_107449256
ENSMUST00000010192.11	chr9	+	1394	12	FSM	ENSMUSG00000010048.11	ENSMUST00000010192.11	2056	12	115	547	115	-284	multi-exon	TRUE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTTCAAAGCCCGGACCA	NA	NA	NA	NA	NA	NA	NA	NA	107464955	107469690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
ENSMUST00000010198.5	chr9	+	1321	3	FSM	ENSMUSG00000010054.5	ENSMUST00000010198.5	1665	3	115	229	0	-229	multi-exon	FALSE	canonical	NA	NA	NA	NA	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACTTAAGAGGCATAATT	NA	NA	NA	NA	NA	NA	NA	NA	107440568	107443082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_107440732_107441774_107441896_107442045
ENSMUST00000010211.7	chr9	+	1727	5	FSM	ENSMUSG00000010067.14	ENSMUST00000010211.7	1727	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	483	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTTGGACTCTATAGA	NA	NA	NA	NA	NA	NA	NA	NA	107431781	107439462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_107432125_107434651_107434757_107434968_107435267_107435385_107435502_107438597
ENSMUST00000010239.6	chr19	-	1819	9	FSM	ENSMUSG00000010095.14	ENSMUST00000010239.6	1819	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACTGGGTGTTTTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	8691243	8684980	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
ENSMUST00000010249.7	chr19	-	818	5	FSM	ENSMUSG00000118346.2	ENSMUST00000010249.7	818	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAATATATTACTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	8751831	8749915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8751057_8751698
ENSMUST00000010278.12	chr3	+	1773	10	FSM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	145	1764	145	-1764	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGTGAAGTGGGAAAATT	NA	NA	NA	NA	NA	NA	NA	NA	105866829	105875312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
ENSMUST00000010434.8	chr1	+	3458	4	FSM	ENSMUSG00000010290.8	ENSMUST00000010434.8	3458	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGCAGGCCTGTCATTT	NA	NA	NA	NA	NA	NA	NA	NA	43137869	43155107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_43138023_43139874_43140042_43150157_43150534_43152345
ENSMUST00000010451.8	chr7	+	507	3	FSM	ENSMUSG00000010307.8	ENSMUST00000010451.8	1831	3	0	1324	0	-1324	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGGCATGCGGCCACT	NA	NA	NA	NA	NA	NA	NA	NA	46700348	46703201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_46700550_46702597_46702863_46703160
ENSMUST00000010506.10	chr11	+	842	7	FSM	ENSMUSG00000010362.10	ENSMUST00000010506.10	1124	7	30	252	30	24	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTCTGACCGTGTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	101518797	101526674	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_101518891_101519098_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
ENSMUST00000010550.12	chr14	+	418	5	FSM	ENSMUSG00000010406.13	ENSMUST00000010550.12	418	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTGGCTTTCTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	54664365	54667213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_54664418_54664490_54664549_54664627_54664696_54666040_54666106_54667038
ENSMUST00000010807.6	chr19	+	3460	12	FSM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	411	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	NA	NA	NA	NA	NA	NA	NA	10160251	10174238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
ENSMUST00000010974.9	chr15	+	1411	5	FSM	ENSMUSG00000010830.9	ENSMUST00000010974.9	1411	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCAAGTATTTATTTATA	NA	NA	NA	NA	NA	NA	NA	NA	79400611	79411940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_79400842_79407011_79407113_79409004_79409164_79409867_79410121_79411272
ENSMUST00000010974.9-0	chr15	+	1201	5	FSM	ENSMUSG00000010830.9	ENSMUST00000010974.9	1411	5	0	210	0	-210	multi-exon	FALSE	canonical	NA	NA	NA	NA	760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGTTAGCTGAGATGGAC	NA	NA	NA	NA	NA	NA	NA	NA	79400611	79411730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_79400842_79407011_79407113_79409004_79409164_79409867_79410121_79411272
ENSMUST00000011055.7	chr2	+	919	7	FSM	ENSMUSG00000010911.13	ENSMUST00000011055.7	919	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGAAATTTTCTTGATGT	NA	NA	NA	NA	NA	NA	NA	NA	102904019	102922989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922262_102922809
ENSMUST00000011981.5	chr8	+	934	5	FSM	ENSMUSG00000011837.5	ENSMUST00000011981.5	1536	5	14	588	0	-586	multi-exon	FALSE	canonical	NA	NA	NA	NA	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAGATGGAGGGACTGG	NA	NA	NA	NA	NA	NA	NA	NA	4303093	4305632	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_4303305_4304281_4304402_4304550_4304620_4304991_4305374_4305480
ENSMUST00000012734.10	chr5	+	1024	7	FSM	ENSMUSG00000029131.15	ENSMUST00000012734.10	1024	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTTGTATTTGGTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	29940992	29962967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29961231_29961337_29962545
ENSMUST00000013299.11	chr8	-	1275	7	FSM	ENSMUSG00000013155.11	ENSMUST00000013299.11	1275	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	106434565	106430283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455
ENSMUST00000013771.15	chr5	+	1434	9	FSM	ENSMUSG00000062077.15	ENSMUST00000013771.15	1434	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCGGCTCCTTTTGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	31274055	31294972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_31274422_31288385_31288559_31289331_31289504_31291393_31291490_31293386_31293621_31294096_31294120_31294231_31294357_31294464_31294558_31294820
ENSMUST00000013845.13	chr14	-	1173	7	FSM	ENSMUSG00000013701.14	ENSMUST00000013845.13	1173	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTATCTCCATTTAATA	NA	NA	NA	NA	NA	NA	NA	NA	31923855	31902118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31920925_31920985_31923599
ENSMUST00000013966.8	chr9	-	888	3	FSM	ENSMUSG00000013822.8	ENSMUST00000013966.8	888	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCGCCGCTGTACTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	22028468	22024286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_22024976_22025103_22025240_22028405
ENSMUST00000014058.11	chr7	+	1373	6	FSM	ENSMUSG00000030693.11	ENSMUST00000014058.11	1373	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCAATGTGTGTGCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	43430458	43434834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_43430571_43430922_43431050_43432159_43432344_43432880_43433156_43433739_43433874_43434293
ENSMUST00000014321.5	chr11	+	1169	7	FSM	ENSMUSG00000014177.11	ENSMUST00000014321.5	1784	7	35	580	35	-580	multi-exon	FALSE	canonical	NA	NA	NA	NA	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCACTAATGTTAACTGA	NA	NA	NA	NA	NA	NA	NA	NA	62770315	62785431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_62770422_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
ENSMUST00000014339.15	chr11	-	2330	14	FSM	ENSMUSG00000014195.17	ENSMUST00000014339.15	2330	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	100510994	100473643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
ENSMUST00000014370.11	chr1	-	2098	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAAAAAAAAAAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	160040445	160029936	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
ENSMUST00000014389.6	chr11	+	1624	7	FSM	ENSMUSG00000014245.9	ENSMUST00000014389.6	2174	7	0	550	0	-550	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATAAACACCTTGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	62349285	62404693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729
ENSMUST00000014438.5	chr18	-	572	3	FSM	ENSMUSG00000014294.5	ENSMUST00000014438.5	572	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1044	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGATGTCGTACGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	36877610	36875384	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_36875712_36877233_36877341_36877472
ENSMUST00000014445.7	chr16	-	596	5	FSM	ENSMUSG00000014301.14	ENSMUST00000014445.7	596	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCTGTTTGAGAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	4442852	4434327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_4434498_4434676_4434743_4434989_4435127_4435782_4435868_4442714
ENSMUST00000014684.6	chr17	-	1046	8	FSM	ENSMUSG00000061613.14	ENSMUST00000014684.6	1046	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	NA	NA	NA	NA	NA	NA	NA	31877866	31866054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
ENSMUST00000014750.15	chr11	-	1711	8	FSM	ENSMUSG00000014606.15	ENSMUST00000014750.15	1711	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGTAAAGTCGTAACT	NA	NA	NA	NA	NA	NA	NA	NA	70537884	70535021	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70537593
ENSMUST00000014920.8	chr8	+	1921	4	FSM	ENSMUSG00000014776.8	ENSMUST00000014920.8	3176	4	0	1255	0	-1255	multi-exon	FALSE	canonical	NA	NA	NA	NA	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAACAAACCCTAGGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	106002771	106007316	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_106003246_106005605_106005903_106006047_106006408_106006526
ENSMUST00000015000.12	chr8	+	785	6	FSM	ENSMUSG00000014856.13	ENSMUST00000015000.12	785	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGTGTGGGTGATGATG	NA	NA	NA	NA	NA	NA	NA	NA	106052985	106055689	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055091_106055239_106055325_106055403
ENSMUST00000015003.10	chr8	+	1993	10	FSM	ENSMUSG00000014859.10	ENSMUST00000015003.10	1993	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	319	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGATCTGGTTCTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	106024294	106032002	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_106024508_106024912_106025023_106025166_106025329_106025627_106025672_106026689_106026752_106026950_106027249_106027884_106028098_106030816_106030865_106031064_106031110_106031204
ENSMUST00000015049.5	chr12	-	1540	3	FSM	ENSMUSG00000014905.5	ENSMUST00000015049.5	2461	3	0	921	0	-921	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCATTTAGTGAAGAAGACC	NA	NA	NA	NA	NA	NA	NA	NA	44257109	44253262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_44254189_44254869_44255097_44256722
ENSMUST00000015100.15	chr5	+	1694	8	FSM	ENSMUSG00000014956.16	ENSMUST00000015100.15	5962	8	379	3889	0	595	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTAGAGGTCGATAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	32616565	32648978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_32616752_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
ENSMUST00000015124.15	chr1	-	1133	5	FSM	ENSMUSG00000014980.15	ENSMUST00000015124.15	1133	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCGTAATCATCCATCA	NA	NA	NA	NA	NA	NA	NA	NA	152262433	152246485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_152247035_152247504_152247647_152259012_152259149_152259449_152259532_152262209
ENSMUST00000015124.15-0	chr1	-	1043	5	FSM	ENSMUSG00000014980.15	ENSMUST00000015124.15	1133	5	90	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCGTAATCATCCATCA	NA	NA	NA	NA	NA	NA	NA	NA	152262343	152246485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_152247035_152247504_152247647_152259012_152259149_152259449_152259532_152262209
ENSMUST00000015157.10	chr8	+	615	5	FSM	ENSMUSG00000015013.10	ENSMUST00000015157.10	1659	5	0	1044	0	-1044	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCTCAGCTGAGGACCAG	NA	NA	NA	NA	NA	NA	NA	NA	123338384	123342355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_123338433_123339804_123339978_123340659_123340748_123341046_123341127_123342129
ENSMUST00000015236.4	chr2	+	451	5	FSM	ENSMUSG00000015092.10	ENSMUST00000015236.4	722	5	50	221	-27	-218	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGGGGAAGGACATCGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	25447908	25451873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980_25451075_25451862
ENSMUST00000015361.11	chrX	+	596	5	FSM	ENSMUSG00000015217.12	ENSMUST00000015361.11	1544	5	-13	961	0	-961	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCTAAAGTTGCCCGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	70599533	70603321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_70599615_70601662_70601814_70602038_70602179_70602703_70602879_70603272
ENSMUST00000015391.10	chr4	+	1552	6	FSM	ENSMUSG00000015247.11	ENSMUST00000015391.10	1552	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTATCAAGTGAGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	53011879	53022060	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_53012048_53015014_53015226_53017048_53017208_53020181_53020332_53021110_53021198_53021283
ENSMUST00000015433.4	chrX	-	761	3	FSM	ENSMUSG00000015289.5	ENSMUST00000015433.4	761	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCCTCTAAATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	73397224	73395766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_73396105_73396479_73396609_73396930
ENSMUST00000015456.10	chr10	+	1284	4	FSM	ENSMUSG00000015312.10	ENSMUST00000015456.10	1284	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTCTCGTTGTATTTTA	NA	NA	NA	NA	NA	NA	NA	NA	80765906	80768038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80766194_80766281_80766384_80766862_80767086_80767366
ENSMUST00000015467.9	chr3	+	1753	4	FSM	ENSMUSG00000052310.10	ENSMUST00000015467.9	2364	4	0	611	0	-607	multi-exon	FALSE	canonical	NA	NA	NA	NA	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGGGTGCCATGCCACC	NA	NA	NA	NA	NA	NA	NA	NA	90155478	90160308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_90155567_90156252_90156471_90156632_90156764_90158992
ENSMUST00000015481.6	chr2	+	1063	3	FSM	ENSMUSG00000015337.6	ENSMUST00000015481.6	1063	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTCCTGTCCTGCTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	30061504	30064081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_30062079_30062853_30062964_30063702
ENSMUST00000015501.11	chr9	+	2045	14	FSM	ENSMUSG00000015357.11	ENSMUST00000015501.11	2885	14	72	768	37	-768	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGCAAACAGCTAAACCAT	NA	NA	NA	NA	NA	NA	NA	NA	65201613	65237171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65219379_65219422_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063_65234171_65237095
ENSMUST00000015680.11	chr13	+	1152	7	FSM	ENSMUSG00000015536.15	ENSMUST00000015680.11	1152	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATAGATCCTGTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	114954812	114965259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114961898_114962693_114962818_114964824
ENSMUST00000015680.11-0	chr13	+	980	7	FSM	ENSMUSG00000015536.15	ENSMUST00000015680.11	1152	7	-7	179	-1	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCTCGCAGTGCGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	114954805	114965080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114961898_114962693_114962818_114964824
ENSMUST00000015719.16	chr17	+	823	4	FSM	ENSMUSG00000015575.16	ENSMUST00000015719.16	823	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2011	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTCCAGTGTTTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	26895343	26918621	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_26895553_26901651_26901700_26914328_26914459_26918185
ENSMUST00000015723.5	chr17	-	1525	2	FSM	ENSMUSG00000015579.6	ENSMUST00000015723.5	1525	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGGCTTCTTTTAGGATT	NA	NA	NA	NA	NA	NA	NA	NA	27060539	27057637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_27058622_27059998
ENSMUST00000015725.16	chr17	+	1098	6	FSM	ENSMUSG00000024191.16	ENSMUST00000015725.16	1098	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGTGGTAAATGCTTAAC	NA	NA	NA	NA	NA	NA	NA	NA	27000039	27011495	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_27000151_27002418_27002512_27005670_27005763_27008668_27008771_27009899_27010019_27010914
ENSMUST00000015829.15	chr7	+	1325	11	FSM	ENSMUSG00000030861.16	ENSMUST00000015829.15	6081	11	134	4622	32	-5	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCTGCGTCACTGACAAA	NA	NA	NA	NA	NA	NA	NA	NA	131012463	131046051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_131012517_131026200_131026361_131027503_131027605_131030157_131030365_131031675_131031847_131033665_131033792_131035998_131036092_131039130_131039221_131042930_131043069_131045197_131045298_131045965
ENSMUST00000015846.9	chr3	-	1851	13	FSM	ENSMUSG00000015702.14	ENSMUST00000015846.9	1851	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACCCTAAAACAAAGACGG	NA	NA	NA	NA	NA	NA	NA	NA	95214487	95203406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_95204164_95204547_95204671_95207463_95207523_95207612_95207709_95207841_95207927_95208402_95208463_95208621_95208702_95209645_95209737_95209976_95210091_95210296_95210392_95213172_95213270_95213642_95213734_95214384
ENSMUST00000015846.9-0	chr3	-	1705	13	FSM	ENSMUSG00000015702.14	ENSMUST00000015846.9	1851	13	0	146	0	56	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTCCTCCCCTGTTCA	NA	NA	NA	NA	NA	NA	NA	NA	95214487	95203552	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_95204164_95204547_95204671_95207463_95207523_95207612_95207709_95207841_95207927_95208402_95208463_95208621_95208702_95209645_95209737_95209976_95210091_95210296_95210392_95213172_95213270_95213642_95213734_95214384
ENSMUST00000015855.8	chr3	-	1227	8	FSM	ENSMUSG00000015711.9	ENSMUST00000015855.8	3140	8	194	1719	-140	-557	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAAGCTGACACCTATCC	NA	NA	NA	NA	NA	NA	NA	NA	95189193	95162703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_95162739_95165337_95165497_95166550_95166646_95169521_95169681_95170902_95171088_95172728_95172932_95175541_95175635_95188895
ENSMUST00000015858.12	chr3	+	1457	11	FSM	ENSMUSG00000015714.12	ENSMUST00000015858.12	2216	11	183	576	183	-576	multi-exon	FALSE	canonical	NA	NA	NA	NA	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTTCTAAGCTACCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	95222577	95230334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228698_95228885_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
ENSMUST00000015858.12-1	chr3	+	1469	11	FSM	ENSMUSG00000015714.12	ENSMUST00000015858.12	2216	11	0	747	0	-747	multi-exon	FALSE	canonical	NA	NA	NA	NA	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGGCATTTGAGCTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	95222394	95230163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228698_95228885_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
ENSMUST00000015877.14-1	chr6	+	1192	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	59	1286	59	-1286	multi-exon	FALSE	canonical	NA	NA	NA	NA	284	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTCTCTCTCTGTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	17637040	17665685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
ENSMUST00000015893.13	chr3	+	1381	7	FSM	ENSMUSG00000015749.13	ENSMUST00000015893.13	1381	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGGTGTAGTTTGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	95836589	95852877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845316_95851618_95851674_95852491
ENSMUST00000015901.11	chr10	+	1618	13	FSM	ENSMUSG00000015757.11	ENSMUST00000015901.11	3471	13	30	1823	30	-1823	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTTTCAGGTTACACTGA	NA	NA	NA	NA	NA	NA	NA	NA	7668684	7697076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
ENSMUST00000015920.12	chr2	-	973	4	FSM	ENSMUSG00000015776.13	ENSMUST00000015920.12	973	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCCTGACTGCCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	26800581	26795599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_26796006_26798104_26798314_26799004_26799086_26800304
ENSMUST00000015934.13	chr2	-	1173	9	FSM	ENSMUSG00000015790.17	ENSMUST00000015934.13	1173	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	NA	NA	NA	NA	NA	NA	NA	26806542	26803394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ENSMUST00000015934.13-0	chr2	-	1040	9	FSM	ENSMUSG00000015790.17	ENSMUST00000015934.13	1173	9	133	0	133	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	NA	NA	NA	NA	NA	NA	NA	26806409	26803394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ENSMUST00000015950.12	chr5	-	1380	7	FSM	ENSMUSG00000015806.13	ENSMUST00000015950.12	1380	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	NA	NA	NA	NA	NA	NA	NA	45607578	45591394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
ENSMUST00000016279.11	chr5	-	1905	5	FSM	ENSMUSG00000041132.12	ENSMUST00000016279.11	1905	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGGGTTTTCCATTGAA	NA	NA	NA	NA	NA	NA	NA	NA	150517990	150495108	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_150496458_150497464_150497542_150499714_150499804_150500104_150500233_150517728
ENSMUST00000016488.13	chr2	+	1160	5	FSM	ENSMUSG00000016344.15	ENSMUST00000016488.13	1160	5	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCCCAAGGTTGGGGATA	NA	NA	NA	NA	NA	NA	NA	NA	180829039	180830564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_180829248_180829342_180829530_180829601_180829680_180829796_180829894_180829974
ENSMUST00000016553.5	chrX	+	4230	9	FSM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTTAATGTGTGGATT	NA	NA	NA	NA	NA	NA	NA	NA	36390447	36414399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329_36403394_36405290_36405401_36405489_36405566_36406557_36406708_36411443
ENSMUST00000016638.8	chr1	+	2454	8	FSM	ENSMUSG00000016494.10	ENSMUST00000016638.8	2454	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGTGGCCCTATAATG	NA	NA	NA	NA	NA	NA	NA	NA	194621126	194643587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_194621353_194630146_194630315_194631612_194631873_194633246_194633328_194640724_194640882_194641117_194641171_194641373_194641539_194642243
ENSMUST00000016639.12	chr19	-	1012	7	FSM	ENSMUSG00000016495.13	ENSMUST00000016639.12	1012	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAATCATGGCAGTATTC	NA	NA	NA	NA	NA	NA	NA	NA	29339370	29326104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_29326406_29327759_29327870_29328443_29328575_29335716_29335804_29338216_29338328_29338441_29338540_29339196
ENSMUST00000016703.8	chr11	-	1993	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11722	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTAGCCTTGGCCACAA	NA	NA	NA	NA	NA	NA	NA	NA	115915330	115912786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
ENSMUST00000016781.8	chr15	-	1013	7	FSM	ENSMUSG00000016637.8	ENSMUST00000016781.8	1013	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACGGCTTCTGTTCTTAGT	NA	NA	NA	NA	NA	NA	NA	NA	78058307	78043662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_78043909_78048389_78048500_78049346_78049465_78050173_78050234_78051269_78051330_78052112_78052193_78057968
ENSMUST00000016902.5	chr15	+	942	5	FSM	ENSMUSG00000016758.5	ENSMUST00000016902.5	942	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCCTTAGGTCGTCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	83411062	83428835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_83411138_83425495_83425644_83427265_83427365_83427780_83427899_83428333
ENSMUST00000016977.15	chr5	+	438	6	FSM	ENSMUSG00000016833.15	ENSMUST00000016977.15	638	6	122	78	2	-18	multi-exon	FALSE	canonical	NA	NA	NA	NA	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATACCGAGAATAAATTTT	NA	NA	NA	NA	NA	NA	NA	NA	100946614	100952259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100950918_100950977_100951835_100951896_100952197
ENSMUST00000017153.4	chr2	-	2458	5	FSM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4417	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTCAGTTTTATTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	164285106	164266166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_164268158_164270812_164271009_164271599_164271647_164273106_164273234_164285009
ENSMUST00000017188.14	chr13	-	1504	8	FSM	ENSMUSG00000060147.16	ENSMUST00000017188.14	1504	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	34119979	34101909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119609_34119778_34119904
ENSMUST00000017430.12	chr11	-	1434	9	FSM	ENSMUSG00000017286.16	ENSMUST00000017430.12	1434	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAAAAAAACAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	76134551	76112335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
ENSMUST00000017430.12-0	chr11	-	1150	9	FSM	ENSMUSG00000017286.16	ENSMUST00000017430.12	1434	9	0	284	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGGCAAATTCCTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	76134551	76112619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
ENSMUST00000017548.7	chr11	+	751	6	FSM	ENSMUSG00000017404.13	ENSMUST00000017548.7	751	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	97917749	97921318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ENSMUST00000017552.13	chr11	-	3396	14	FSM	ENSMUSG00000020882.18	ENSMUST00000017552.13	3396	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGTTTTCTTTGTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	97913460	97892333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_97894189_97895954_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97901452_97901473_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ENSMUST00000017839.3	chr11	+	1354	5	FSM	ENSMUSG00000020707.7	ENSMUST00000017839.3	1984	5	0	630	0	-630	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTGTTTAGGGGCCACT	NA	NA	NA	NA	NA	NA	NA	NA	80074676	80089953	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_80075082_80080049_80080194_80084711_80084875_80087698_80087774_80089386
ENSMUST00000017841.4	chr2	-	1688	12	FSM	ENSMUSG00000017697.4	ENSMUST00000017841.4	1688	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATGGGTGTTTTGCCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	163592159	163568503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_163568969_163569463_163569564_163570036_163570167_163571931_163571997_163572217_163572320_163572400_163572473_163573024_163573153_163574176_163574293_163574773_163574918_163577268_163577392_163580082_163580145_163591978
ENSMUST00000017868.7	chr11	-	2395	13	FSM	ENSMUSG00000017724.15	ENSMUST00000017868.7	2395	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTATTTGCTCTTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	101676197	101660572	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665072_101666143_101666271_101667918_101667973_101674792_101674841_101675055_101675150_101675342_101675454_101675933
ENSMUST00000017908.3	chr2	+	1652	2	FSM	ENSMUSG00000017764.3	ENSMUST00000017908.3	2705	2	327	726	327	-726	multi-exon	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGAACTGGCCGACAACT	NA	NA	NA	NA	NA	NA	NA	NA	164664932	164668065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_164665121_164666601
ENSMUST00000017922.9	chr13	-	315	3	NNC	ENSMUSG00000017778.15	novel	540	3	NA	NA	130	-74	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGATGATCTGAAAATTG	NA	NA	NA	NA	NA	NA	NA	NA	86194893	86193013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr13_-_86193028_86193845_86193973_86194719
ENSMUST00000017945.15	chr11	+	1040	8	FSM	ENSMUSG00000017801.16	ENSMUST00000017945.15	1965	8	4	921	4	-921	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTTGGTTTTCCCAACC	NA	NA	NA	NA	NA	NA	NA	NA	100978129	100982112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_100978356_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ENSMUST00000017975.7	chr17	+	1243	6	FSM	ENSMUSG00000017831.9	ENSMUST00000017975.7	2366	6	53	1070	53	-25	multi-exon	FALSE	canonical	NA	NA	NA	NA	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACTGTGTGTACACTTGT	NA	NA	NA	NA	NA	NA	NA	NA	53786314	53813638	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_53786637_53790848_53791104_53804554_53804707_53805415_53805539_53807403_53807498_53813341
ENSMUST00000017981.10	chr11	+	1371	4	FSM	ENSMUSG00000017837.13	ENSMUST00000017981.10	2097	4	44	682	44	126	multi-exon	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTGAGTTGACAGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	100513745	100517751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_100513835_100515017_100515126_100515768_100516011_100516819
ENSMUST00000018113.8	chr2	-	2107	10	FSM	ENSMUSG00000017969.14	ENSMUST00000018113.8	2107	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCGCAGTAGGTAGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	167082524	167044826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167056727_167056910_167063128_167063281_167065904_167066049_167067195_167067375_167069381_167069506_167082263
ENSMUST00000018156.12	chr11	+	785	6	FSM	ENSMUSG00000018012.12	ENSMUST00000018156.12	1076	6	0	291	0	-291	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGAGTCTGCTGTGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	120612295	120614504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_120612468_120613056_120613129_120613334_120613453_120613631_120613695_120614006_120614167_120614304
ENSMUST00000018246.6	chr13	+	513	2	FSM	ENSMUSG00000018102.6	ENSMUST00000018246.6	1156	2	0	643	0	-643	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCATAGTTTCAGAACTC	NA	NA	NA	NA	NA	NA	NA	NA	23868181	23876248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_23868605_23876158
ENSMUST00000018287.10	chr5	+	2849	3	FSM	ENSMUSG00000018143.11	ENSMUST00000018287.10	2849	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGTGTCTGGATGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	139777267	139788408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_139777468_139784893_139784974_139785839
ENSMUST00000018295.14	chr15	+	1410	13	FSM	ENSMUSG00000068206.14	ENSMUST00000018295.14	1977	13	34	533	34	-217	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACGCATGTGGGGCCACT	NA	NA	NA	NA	NA	NA	NA	NA	79113615	79133133	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
ENSMUST00000018333.13	chr1	+	1845	11	FSM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTTTGTTACCTAATTC	NA	NA	NA	NA	NA	NA	NA	NA	143653018	143683204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143682421
ENSMUST00000018361.10	chr11	+	1384	5	FSM	ENSMUSG00000018217.13	ENSMUST00000018361.10	1800	5	0	416	0	-400	multi-exon	FALSE	canonical	NA	NA	NA	NA	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAATCGTTTAAACCACTC	NA	NA	NA	NA	NA	NA	NA	NA	63022337	63049957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_63022481_63023950_63024071_63025246_63025347_63041944_63042086_63049077
ENSMUST00000018383.10	chr11	+	821	4	FSM	ENSMUSG00000018239.10	ENSMUST00000018383.10	1267	4	0	446	0	272	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGATATGTAGAGGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	53215505	53223682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_53215569_53218095_53218255_53221513_53221559_53223128
ENSMUST00000018437.3	chr11	-	861	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGACCTGTGTTGGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	70545470	70542675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_70543048_70543612_70543806_70545174
ENSMUST00000018568.4	chr11	+	1788	13	FSM	ENSMUSG00000020537.10	ENSMUST00000018568.4	1788	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	482	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGGAACTTGTGTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	60345416	60359580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_60345570_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
ENSMUST00000018593.10	chr11	+	1100	7	FSM	ENSMUSG00000018449.13	ENSMUST00000018593.10	1100	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAACTTTCCTGGAGATT	NA	NA	NA	NA	NA	NA	NA	NA	70861038	70868659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70864959_70865725_70865867_70868483
ENSMUST00000018614.3	chr11	+	2538	14	FSM	ENSMUSG00000018470.9	ENSMUST00000018614.3	2538	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACCACGTCTGAAATTGCA	NA	NA	NA	NA	NA	NA	NA	NA	69217083	69223868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69217750_69218945_69218990_69219076_69219115_69219334_69219415_69220675_69220721_69220808_69220854_69221008_69221053_69221222_69221310_69221565_69221652_69221876_69221998_69222087_69222183_69222285_69222407_69222561_69222651_69222891
ENSMUST00000018644.3	chr11	+	885	2	FSM	ENSMUSG00000018500.3	ENSMUST00000018644.3	1845	2	0	960	0	-960	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTCTTCCATCCAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	62139809	62156319	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_62140263_62155887
ENSMUST00000018653.8	chr11	-	1032	5	FSM	ENSMUSG00000018509.9	ENSMUST00000018653.8	1032	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACTATGACATATTTCT	NA	NA	NA	NA	NA	NA	NA	NA	62430087	62415771	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_62416114_62418317_62418433_62424710_62424781_62427107_62427207_62429681
ENSMUST00000018711.15	chr11	+	968	4	FSM	ENSMUSG00000018567.15	ENSMUST00000018711.15	1351	4	0	383	0	44	multi-exon	FALSE	canonical	NA	NA	NA	NA	1514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGCTCCTTCCTTGACAT	NA	NA	NA	NA	NA	NA	NA	NA	69881968	69885394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69882629_69883190_69883270_69883407_69883527_69885284
ENSMUST00000018711.15-1	chr11	+	855	4	FSM	ENSMUSG00000018567.15	ENSMUST00000018711.15	1351	4	496	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCCTGTGTCATTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	69882464	69885777	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69882629_69883190_69883270_69883407_69883527_69885284
ENSMUST00000018727.4	chr11	+	2854	12	FSM	ENSMUSG00000018583.6	ENSMUST00000018727.4	6703	12	33	3816	33	48	multi-exon	TRUE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	55360543	55391848	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
ENSMUST00000018737.13	chr11	-	2300	10	FSM	ENSMUSG00000018593.14	ENSMUST00000018737.13	2300	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGTCCCGGGTGATGG	NA	NA	NA	NA	NA	NA	NA	NA	55310906	55285325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613
ENSMUST00000018743.5	chr11	+	909	4	FSM	ENSMUSG00000018599.6	ENSMUST00000018743.5	2522	4	47	1566	47	-1566	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGTCAGCCTCTGTCAA	NA	NA	NA	NA	NA	NA	NA	NA	60619270	60622211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_60619394_60621108_60621262_60621455_60621619_60621741
ENSMUST00000018792.12	chr11	-	1571	4	FSM	ENSMUSG00000018648.16	ENSMUST00000018792.12	1571	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTTATTAATCATTTTG	NA	NA	NA	NA	NA	NA	NA	NA	83959627	83938866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_83940137_83941657_83941747_83959306_83959407_83959515
ENSMUST00000018795.13	chr11	-	2151	16	FSM	ENSMUSG00000018651.15	ENSMUST00000018795.13	2151	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGGTGTGTCAGATAT	NA	NA	NA	NA	NA	NA	NA	NA	84020426	83969745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
ENSMUST00000018800.9	chr11	+	879	9	FSM	ENSMUSG00000061086.13	ENSMUST00000018800.9	879	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCGTTGATTTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	104441488	104478041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_104441586_104452379_104452402_104468246_104468401_104471227_104471256_104474803_104474954_104475264_104475439_104475762_104475841_104476552_104476598_104477910
ENSMUST00000018821.9	chr11	-	1685	12	FSM	ENSMUSG00000018677.10	ENSMUST00000018821.9	1685	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAACCAA	NA	NA	NA	NA	NA	NA	NA	NA	102298370	102293810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ENSMUST00000018914.3	chr2	-	714	5	FSM	ENSMUSG00000018770.10	ENSMUST00000018914.3	714	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	NA	NA	NA	NA	NA	NA	NA	73741670	73738790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741595
ENSMUST00000018992.4	chr11	-	2109	15	FSM	ENSMUSG00000018848.5	ENSMUST00000018992.4	2109	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	649	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGGTGTGTTTCTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	35725333	35699207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
ENSMUST00000019038.15	chr11	+	2191	11	FSM	ENSMUSG00000059248.14	ENSMUST00000019038.15	3784	11	0	1593	0	-1588	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGGCTGCAGCAGCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	117157071	117251546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_117157422_117181223_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ENSMUST00000019064.9	chr11	-	1322	5	FSM	ENSMUSG00000018920.12	ENSMUST00000019064.9	2699	5	324	1053	324	-1053	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCTAGGTCTCCAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	70350486	70345861	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_70346271_70346480_70346889_70349570_70349654_70349854_70349994_70350203
ENSMUST00000019067.8	chr11	+	902	3	FSM	ENSMUSG00000018923.14	ENSMUST00000019067.8	902	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAGAGTCTCTCTCTCGC	NA	NA	NA	NA	NA	NA	NA	NA	70342744	70344553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_70342890_70343033_70343165_70343927
ENSMUST00000019109.8-1	chr5	+	597	2	FSM	ENSMUSG00000018965.12	ENSMUST00000019109.8	1764	2	62	1105	62	-1105	multi-exon	FALSE	canonical	NA	NA	NA	NA	467	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGCTTCTGGGGAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	33176221	33184205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_33176499_33183885
ENSMUST00000019169.8	chr8	+	854	8	FSM	ENSMUSG00000002395.15	ENSMUST00000019169.8	854	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	NA	NA	NA	NA	NA	NA	NA	71819860	71822376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ENSMUST00000019183.14	chr9	+	1746	12	FSM	ENSMUSG00000019039.15	ENSMUST00000019183.14	1746	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGAGTGAGGCGTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	108447084	108449973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449064_108449139_108449317_108449385_108449497_108449591_108449661_108449749
ENSMUST00000019198.7	chr5	+	786	5	FSM	ENSMUSG00000019054.14	ENSMUST00000019198.7	786	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGTGTGAGCGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	136990930	136995088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_136991083_136991852_136991986_136993946_136994024_136994418_136994525_136994770
ENSMUST00000019224.9	chr15	+	956	5	FSM	ENSMUSG00000019080.9	ENSMUST00000019224.9	2246	5	541	749	541	-749	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCTGGGACACAGGAAAT	NA	NA	NA	NA	NA	NA	NA	NA	76586205	76587690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76586551_76586843_76586992_76587078_76587204_76587273_76587384_76587462
ENSMUST00000019229.15	chr4	+	1145	7	FSM	ENSMUSG00000006392.17	ENSMUST00000019229.15	1145	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	118266562	118272308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_118266584_118268081_118268201_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
ENSMUST00000019283.10	chr8	+	1836	11	FSM	ENSMUSG00000019139.11	ENSMUST00000019283.10	1836	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTCCTTGTGTGCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	71047130	71049938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71047922_71048010_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
ENSMUST00000019287.9	chr18	+	1478	12	FSM	ENSMUSG00000019143.16	ENSMUST00000019287.9	2002	12	38	486	38	19	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAGCATGGATGTTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	36916321	36924261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36923186_36923304_36923521_36923669_36924122
ENSMUST00000019302.10	chr7	+	815	3	FSM	ENSMUSG00000019158.10	ENSMUST00000019302.10	815	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	898	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAGACTCTGAGTGATA	NA	NA	NA	NA	NA	NA	NA	NA	16186703	16189415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_16187096_16188045_16188139_16189085
ENSMUST00000019333.10	chr11	+	3570	11	FSM	ENSMUSG00000019189.14	ENSMUST00000019333.10	3570	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTGTATTCCTGTGATGT	NA	NA	NA	NA	NA	NA	NA	NA	44409790	44456347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_44410102_44415754_44415971_44422102_44422212_44433455_44433548_44439590_44439827_44442470_44442647_44445964_44446106_44448082_44448266_44450798_44450947_44452291_44452649_44454746
ENSMUST00000019382.17	chr8	-	1158	13	FSM	ENSMUSG00000031708.18	ENSMUST00000019382.17	1158	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	84321106	84298328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
ENSMUST00000019422.6	chr8	+	1872	11	FSM	ENSMUSG00000019278.6	ENSMUST00000019422.6	2236	11	0	364	0	-364	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTACCACATGCACATGA	NA	NA	NA	NA	NA	NA	NA	NA	123912980	123928187	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_123913181_123920771_123920926_123925452_123925586_123925783_123925917_123926032_123926184_123926360_123926431_123926679_123926857_123926945_123927031_123927105_123927182_123927376_123927513_123927630
ENSMUST00000019439.9	chr5	-	1208	4	FSM	ENSMUSG00000019295.9	ENSMUST00000019439.9	2828	4	241	1379	-123	-230	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCATGCAAACACGGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	33815519	33811938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_33811959_33812056_33812217_33812666_33813142_33814966
ENSMUST00000019447.15	chr11	-	1291	8	FSM	ENSMUSG00000019303.15	ENSMUST00000019447.15	1291	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCTTTGCCTTTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	100986262	100982648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983_100986085_100986168
ENSMUST00000019470.14	chr11	+	1779	11	FSM	ENSMUSG00000078652.10	ENSMUST00000019470.14	2664	11	0	885	0	-885	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAAAAGTCCCAGGCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	101207038	101213478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
ENSMUST00000019506.9	chr8	-	616	3	FSM	ENSMUSG00000019362.9	ENSMUST00000019506.9	616	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5404	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCTGTGTGCTGTTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	84976348	84972866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_84973323_84976102_84976159_84976244
ENSMUST00000019605.4	chr11	+	1927	7	FSM	ENSMUSG00000019461.13	ENSMUST00000019605.4	1927	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCCGGATGTGATGGGA	NA	NA	NA	NA	NA	NA	NA	NA	69737501	69741869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
ENSMUST00000019649.4	chr11	+	567	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	0	932	0	-777	multi-exon	FALSE	canonical	NA	NA	NA	NA	1527	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGGCAAGCAGCTGGAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	62441996	62443107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_62442422_62442965
ENSMUST00000019803.9	chr9	+	404	7	FSM	ENSMUSG00000019659.9	ENSMUST00000019803.9	834	7	109	321	109	-321	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCAGTGGATGCCACCAC	NA	NA	NA	NA	NA	NA	NA	NA	110485679	110540353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_110485727_110521383_110521452_110537513_110537594_110538961_110539024_110539194_110539230_110540153_110540231_110540318
ENSMUST00000019829.8	chr12	-	1466	2	ISM	ENSMUSG00000090935.11	ENSMUST00000164431.2	3305	3	28263	1652	6794	-1652	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCTGGTAGGATGGACCT	NA	NA	NA	NA	NA	NA	NA	NA	81551410	81547567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_81548941_81551317
ENSMUST00000019833.5	chr6	+	479	2	FSM	ENSMUSG00000019689.5	ENSMUST00000019833.5	479	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTGGTTTTTGTGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	38511757	38516384	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_38511946_38516093
ENSMUST00000019882.16	chr7	+	819	6	FSM	ENSMUSG00000019738.16	ENSMUST00000019882.16	819	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCCCGTGTTTATTTC	NA	NA	NA	NA	NA	NA	NA	NA	29931372	29932815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
ENSMUST00000019882.16-0	chr7	+	670	6	FSM	ENSMUSG00000019738.16	ENSMUST00000019882.16	819	6	84	65	84	-60	multi-exon	FALSE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCCACCGCTGGACTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	29931456	29932750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
ENSMUST00000019911.14	chr10	+	2005	14	FSM	ENSMUSG00000019777.17	ENSMUST00000019911.14	2005	14	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTTCTGTCTGTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	36850539	36877885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_36850800_36861122_36861236_36862302_36862421_36864075_36864151_36865145_36865285_36867752_36867895_36869603_36869697_36869771_36869881_36872984_36873126_36873389_36873499_36873962_36874094_36874409_36874566_36876364_36876423_36877524
ENSMUST00000019911.14-0	chr10	+	1701	14	FSM	ENSMUSG00000019777.17	ENSMUST00000019911.14	2005	14	26	278	0	-277	multi-exon	FALSE	canonical	NA	NA	NA	NA	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACCTTCCCTGTTTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	36850565	36877607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_36850800_36861122_36861236_36862302_36862421_36864075_36864151_36865145_36865285_36867752_36867895_36869603_36869697_36869771_36869881_36872984_36873126_36873389_36873499_36873962_36874094_36874409_36874566_36876364_36876423_36877524
ENSMUST00000019939.12	chr10	+	1401	4	FSM	ENSMUSG00000019804.13	ENSMUST00000019939.12	1401	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGCTCTGGTTGC	NA	NA	NA	NA	NA	NA	NA	NA	42378026	42411366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_42378489_42401949_42402046_42409144_42409270_42410648
ENSMUST00000019942.6	chr10	-	1439	6	FSM	ENSMUSG00000019806.14	ENSMUST00000019942.6	1439	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCTTCAGAGAATGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	13744701	13528194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_13528756_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
ENSMUST00000019944.9	chr10	+	1466	6	FSM	ENSMUSG00000019808.9	ENSMUST00000019944.9	1466	6	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACCTGGTGTCATCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	13428637	13439120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_13429106_13432595_13432701_13435857_13436009_13437447_13437555_13438380_13438454_13438558
ENSMUST00000019951.16	chr10	-	2177	11	FSM	ENSMUSG00000019813.17	ENSMUST00000019951.16	2177	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCCTGTGGAAATATT	NA	NA	NA	NA	NA	NA	NA	NA	41685603	41594841	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568
ENSMUST00000019962.15-1	chr10	+	2022	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	87	813	87	-813	multi-exon	FALSE	canonical	NA	NA	NA	NA	308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCAGCGCTTGGTTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	41395496	41406231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
ENSMUST00000019991.8	chr10	+	2929	12	FSM	ENSMUSG00000019845.9	ENSMUST00000019991.8	2929	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATCTCTGTGTTAAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	39010018	39027054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39020751_39020928_39021568_39021710_39023307_39023449_39023758_39023934_39025454
ENSMUST00000020002.9	chr10	-	846	3	FSM	ENSMUSG00000078453.4	ENSMUST00000020002.9	846	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTGGTGGCTGTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	17899036	17887007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_17887565_17894586_17894654_17898814
ENSMUST00000020012.7	chr10	-	1981	11	FSM	ENSMUSG00000019863.8	ENSMUST00000020012.7	1981	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGGATTTTACTATAAT	NA	NA	NA	NA	NA	NA	NA	NA	43777741	43750183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_43750703_43752467_43752674_43757468_43757587_43758061_43758255_43760744_43760858_43760938_43761115_43764964_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
ENSMUST00000020022.8	chr10	+	1961	8	FSM	ENSMUSG00000019872.14	ENSMUST00000020022.8	1961	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTTTGCCTTTGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	57670469	57687926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_57670881_57677006_57677221_57678515_57678661_57681662_57681760_57683450_57683621_57683972_57684154_57685141_57685267_57687308
ENSMUST00000020034.6	chr10	+	2582	6	FSM	ENSMUSG00000019883.12	ENSMUST00000020034.6	3856	6	0	1274	0	635	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTATAAAGTTTTTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	29189495	29222191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_29189730_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
ENSMUST00000020049.9	chr10	+	1376	4	FSM	ENSMUSG00000019897.9	ENSMUST00000020049.9	1813	4	437	0	437	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGTGTAATAGAAGCGTT	NA	NA	NA	NA	NA	NA	NA	NA	105677364	105683694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_105677517_105678402_105678710_105681210_105681311_105682877
ENSMUST00000020049.9-1	chr10	+	1470	4	FSM	ENSMUSG00000019897.9	ENSMUST00000020049.9	1813	4	0	343	0	-343	multi-exon	FALSE	canonical	NA	NA	NA	NA	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTAGGTCTGTGCACTGGC	NA	NA	NA	NA	NA	NA	NA	NA	105676927	105683351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_105677517_105678402_105678710_105681210_105681311_105682877
ENSMUST00000020077.11	chr10	+	1565	11	FSM	ENSMUSG00000019920.19	ENSMUST00000020077.11	1565	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAACAAAA	NA	NA	NA	NA	NA	NA	NA	NA	58230194	58257605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_58230423_58234842_58235003_58243891_58243959_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58254468_58254609_58257275
ENSMUST00000020081.11	chr10	+	1387	8	FSM	ENSMUSG00000019923.15	ENSMUST00000020081.11	1834	8	50	397	0	-397	multi-exon	FALSE	canonical	NA	NA	NA	NA	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAGAACTGTACTGACTG	NA	NA	NA	NA	NA	NA	NA	NA	72490726	72510399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72509797
ENSMUST00000020090.8	chr10	+	443	3	FSM	ENSMUSG00000019933.8	ENSMUST00000020090.8	443	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTGGCATGGAGTTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	70040496	70055541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_70040590_70052781_70052897_70055306
ENSMUST00000020109.5	chr10	-	1705	11	FSM	ENSMUSG00000019948.5	ENSMUST00000020109.5	1705	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCTGTTTAATGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	89568157	89547832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561766_89562498_89562623_89564015_89564085_89564761_89564880_89568035
ENSMUST00000020113.15	chr10	+	2862	12	FSM	ENSMUSG00000019952.16	ENSMUST00000020113.15	2862	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAATGAAATGTA	NA	NA	NA	NA	NA	NA	NA	NA	98942897	99033850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_98943086_98943653_98943739_98960692_98960865_98965344_98965525_98980096_98980205_98980340_98980457_98988662_98988797_98990930_98991000_98992063_98992214_99000730_99000812_99028643_99028860_99032487
ENSMUST00000020118.5	chr10	+	2796	3	FSM	ENSMUSG00000019960.9	ENSMUST00000020118.5	2796	3	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGTGTTTTTATTTTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	99099092	99103350	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_99099954_99100405_99100844_99101853
ENSMUST00000020145.12	chr10	+	2456	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	NA	NA	NA	NA	NA	NA	NA	21870564	21875802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ENSMUST00000020150.10	chr10	+	1328	3	FSM	ENSMUSG00000019975.13	ENSMUST00000020150.10	1328	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTATTTTGCTCCATAAT	NA	NA	NA	NA	NA	NA	NA	NA	90918801	90938469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_90919159_90929000_90929119_90937616
ENSMUST00000020171.12	chr10	+	759	5	FSM	ENSMUSG00000019997.12	ENSMUST00000020171.12	2398	5	338	1301	54	-1301	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCACCAGTGTGAAGACATA	NA	NA	NA	NA	NA	NA	NA	NA	24471677	24473275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_24471687_24471773_24471997_24472244_24472497_24472629_24472842_24473212
ENSMUST00000020182.16	chr10	-	2837	10	FSM	ENSMUSG00000020003.17	ENSMUST00000020182.16	8099	10	42	5220	0	1712	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAGAGTTTGAGACCAAG	NA	NA	NA	NA	NA	NA	NA	NA	19783393	19734865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_19736741_19745039_19745140_19760523_19760580_19762805_19762920_19764401_19764509_19769995_19770105_19770470_19770549_19780308_19780460_19781590_19781649_19783204
ENSMUST00000020188.13	chr10	+	2112	7	FSM	ENSMUSG00000020009.14	ENSMUST00000020188.13	2112	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACTTGGATATTCATTTA	NA	NA	NA	NA	NA	NA	NA	NA	19467696	19485977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_19467946_19473163_19473279_19477067_19477232_19479501_19479681_19481981_19482169_19483004_19483130_19484884
ENSMUST00000020203.7	chr10	-	861	4	FSM	ENSMUSG00000020018.7	ENSMUST00000020203.7	861	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	989	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTGTTCACTTGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	93425568	93418890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_93419393_93419891_93419957_93423859_93423986_93425400
ENSMUST00000020209.16-1	chr10	+	854	4	FSM	ENSMUSG00000020022.18	ENSMUST00000020209.16	1110	4	49	207	0	-207	multi-exon	FALSE	canonical	NA	NA	NA	NA	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTGGCTCTGTATGGAG	NA	NA	NA	NA	NA	NA	NA	NA	94034865	94057098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_94034993_94035811_94035895_94039149_94039238_94056542
ENSMUST00000020227.11	chr10	-	3026	13	FSM	ENSMUSG00000020038.11	ENSMUST00000020227.11	3026	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGTGTACTTGTGTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	85020928	84967563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_84968172_84968914_84969023_84969105_84969178_84978879_84979033_84979502_84979706_84980017_84980170_84982207_84982520_84982599_84982741_84983770_84983860_84984477_84984663_84987076_84987220_84992949_84993059_85020177
ENSMUST00000020248.16	chr10	+	1052	7	FSM	ENSMUSG00000020056.17	ENSMUST00000020248.16	1052	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGAATGTGTCTTAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	88036954	88082020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055111_88055223_88070255_88070321_88081617
ENSMUST00000020270.6	chr10	-	2007	15	FSM	ENSMUSG00000020076.8	ENSMUST00000020270.6	2535	15	45	483	45	-483	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGATACTCTCAGTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	62486952	62452276	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
ENSMUST00000020285.10	chr10	+	2613	7	FSM	ENSMUSG00000020088.11	ENSMUST00000020285.10	2613	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTCTCCTTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	61516088	61529076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
ENSMUST00000020286.7	chr10	+	961	11	FSM	ENSMUSG00000020089.9	ENSMUST00000020286.7	1364	11	69	334	69	-334	multi-exon	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAGCAGAAAAACTGAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	61484399	61509613	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
ENSMUST00000020307.11	chr10	-	1379	5	FSM	ENSMUSG00000020107.11	ENSMUST00000020307.11	1379	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGCTGTGCGTATCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	59838933	59823729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838239_59838290_59838777
ENSMUST00000020309.7	chr10	+	1792	9	FSM	ENSMUSG00000020109.14	ENSMUST00000020309.7	2238	9	0	446	0	-446	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGGAAGGCAGCCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	59715447	59733897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732318_59733312
ENSMUST00000020334.9	chr10	-	3863	21	FSM	ENSMUSG00000020124.11	ENSMUST00000020334.9	4666	21	12	791	12	-791	multi-exon	TRUE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGTTCCTGATGGAAT	NA	NA	NA	NA	NA	NA	NA	NA	123032846	122948431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
ENSMUST00000020346.6	chr10	-	3681	2	FSM	ENSMUSG00000020137.6	ENSMUST00000020346.6	3681	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAACAAAAACACAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	115220315	115205376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_115208852_115220109
ENSMUST00000020358.12	chr11	+	768	6	FSM	ENSMUSG00000020149.18	ENSMUST00000020358.12	2827	6	7	2052	0	-660	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCACTCCAGTCAAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	20151438	20174804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
ENSMUST00000020372.6	chr10	-	445	3	FSM	ENSMUSG00000020163.13	ENSMUST00000020372.6	445	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2520	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGCTCCTTCCTCATC	NA	NA	NA	NA	NA	NA	NA	NA	80242664	80238830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_80238990_80239969_80240121_80242529
ENSMUST00000020397.11	chr10	+	1984	4	FSM	ENSMUSG00000020180.11	ENSMUST00000020397.11	3036	4	0	1052	0	911	multi-exon	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACATCCTTACCCTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	75353384	75372163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_75353960_75355147_75355295_75368010_75368204_75371094
ENSMUST00000020435.11	chr10	-	955	5	FSM	ENSMUSG00000020216.14	ENSMUST00000020435.11	955	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCATCTACTCCTTTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	80647719	80644329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_80644874_80644979_80645063_80646009_80646199_80646297_80646401_80647683
ENSMUST00000020440.7	chr10	-	1225	3	FSM	ENSMUSG00000020219.8	ENSMUST00000020440.7	1225	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTCCCATCGGACTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	80736803	80735283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_80736094_80736315_80736385_80736457
ENSMUST00000020446.11	chr10	+	683	7	FSM	ENSMUSG00000020225.11	ENSMUST00000020446.11	904	7	43	178	13	-178	multi-exon	FALSE	canonical	NA	NA	NA	NA	339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATCGCTGCCATCAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	120044697	120060644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_120044848_120051445_120051555_120053408_120053515_120056655_120056690_120057910_120058029_120059741_120059788_120060524
ENSMUST00000020454.11	chr10	-	1621	9	FSM	ENSMUSG00000020232.18	ENSMUST00000020454.11	1621	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	81186258	81181884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967
ENSMUST00000020461.15	chr10	-	3348	10	FSM	ENSMUSG00000055053.19	ENSMUST00000020461.15	3348	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATCCATTA	NA	NA	NA	NA	NA	NA	NA	NA	81263007	81234971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_81236906_81239185_81239263_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81262909
ENSMUST00000020490.13	chr9	+	2966	9	FSM	ENSMUSG00000020257.14	ENSMUST00000020490.13	3747	9	282	499	282	-499	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTCTTAGAAGACATACCG	NA	NA	NA	NA	NA	NA	NA	NA	106048408	106067839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_106048579_106053811_106053910_106057764_106057832_106060814_106060915_106061378_106061496_106061881_106062038_106062447_106062518_106063568_106063712_106065794
ENSMUST00000020501.15	chr10	+	704	4	FSM	ENSMUSG00000020265.17	ENSMUST00000020501.15	2630	4	128	1798	0	-110	multi-exon	FALSE	canonical	NA	NA	NA	NA	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCCAATCCCTAGAACTG	NA	NA	NA	NA	NA	NA	NA	NA	77442058	77452367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451981
ENSMUST00000020501.15-1	chr10	+	726	4	FSM	ENSMUSG00000020265.17	ENSMUST00000020501.15	2630	4	0	1904	0	120	multi-exon	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGAGGCTTTGGGGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	77441930	77452261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451981
ENSMUST00000020504.6	chr11	+	636	3	FSM	ENSMUSG00000020267.7	ENSMUST00000020504.6	636	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3326	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGATTTGTTACTCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	54757208	54761327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_54757427_54760673_54760779_54761014
ENSMUST00000020528.14	chr11	+	1737	4	FSM	ENSMUSG00000020287.16	ENSMUST00000020528.14	1737	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	528	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGATGGCACGCGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	32176510	32182700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_32176718_32177751_32177950_32179848_32180054_32181573
ENSMUST00000020529.13	chr11	-	952	9	FSM	ENSMUSG00000020288.14	ENSMUST00000020529.13	3023	9	191	1880	15	-29	multi-exon	TRUE	canonical	NA	NA	NA	NA	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGAGCTTACCGCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	23447839	23440426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_23440571_23440668_23440721_23441012_23441115_23441474_23441583_23442217_23442307_23443278_23443394_23444978_23445065_23446690_23446882_23447774
ENSMUST00000020551.13	chr11	+	1557	10	FSM	ENSMUSG00000020305.14	ENSMUST00000020551.13	3228	10	53	1618	29	-247	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAAGCAGAGCACCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	30904447	31051086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_30904570_30948312_30948522_30978907_30979067_31005457_31005571_31006101_31006238_31008821_31009000_31011388_31011587_31031361_31031623_31035000_31035132_31051036
ENSMUST00000020552.8	chr10	+	1143	2	FSM	ENSMUSG00000020308.8	ENSMUST00000020552.8	1143	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTTGCTGGTCACCTG	NA	NA	NA	NA	NA	NA	NA	NA	79505202	79511961	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_79505618_79511233
ENSMUST00000020553.5	chr11	-	1018	2	FSM	ENSMUSG00000020309.7	ENSMUST00000020553.5	1018	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAATTGTACTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	30936334	30926951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_30927747_30936111
ENSMUST00000020576.8	chr11	-	3512	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTTGTTTTGGTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	40646138	40639378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
ENSMUST00000020578.11-1	chr11	+	1004	4	FSM	ENSMUSG00000020328.11	ENSMUST00000020578.11	1577	4	77	496	77	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	411	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTTCATGGAAAAATATTT	NA	NA	NA	NA	NA	NA	NA	NA	40624570	40630377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_40624982_40626844_40626894_40627319_40627472_40629985
ENSMUST00000020637.9	chr11	-	3779	15	FSM	ENSMUSG00000020368.16	ENSMUST00000020637.9	3779	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTCTGCAGGTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	50216500	50185293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
ENSMUST00000020640.8	chr11	+	1447	8	FSM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACCCACCTTTCCCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	48691186	48697261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
ENSMUST00000020653.6	chr11	+	1201	7	FSM	ENSMUSG00000020386.6	ENSMUST00000020653.6	1201	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGTGTTGGGCAGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	51654513	51682752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_51654619_51668313_51668389_51670515_51670636_51673598_51673665_51678976_51679081_51680023_51680156_51682153
ENSMUST00000020665.13	chr11	+	937	3	FSM	ENSMUSG00000020397.16	ENSMUST00000020665.13	1193	3	22	234	0	-234	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCCTTTTAGTAAGTAG	NA	NA	NA	NA	NA	NA	NA	NA	46327800	46332120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_46327837_46330632_46330803_46331389
ENSMUST00000020685.10	chr11	-	634	5	FSM	ENSMUSG00000020415.17	ENSMUST00000020685.10	634	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTGAGTCTCTGGGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	43317054	43311857	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317027
ENSMUST00000020687.15	chr11	-	741	6	FSM	ENSMUSG00000020415.17	ENSMUST00000020687.15	741	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAACCCCTGATTGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	43317078	43311076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317027
ENSMUST00000020692.7	chr1	-	2743	2	FSM	ENSMUSG00000020423.7	ENSMUST00000020692.7	2743	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	331	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTCTCCTTGGGAGGCG	NA	NA	NA	NA	NA	NA	NA	NA	134006858	134002907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_134005442_134006649
ENSMUST00000020699.4	chr11	+	1075	9	FSM	ENSMUSG00000020424.4	ENSMUST00000020699.4	1574	9	0	499	0	-499	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACCCATAGGGAAGCACCA	NA	NA	NA	NA	NA	NA	NA	NA	4168224	4171910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_4168427_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842
ENSMUST00000020705.5	chr11	+	1864	15	FSM	ENSMUSG00000020430.13	ENSMUST00000020705.5	2911	15	34	1013	34	-1013	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGGTGGTATGTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	3914008	3928991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
ENSMUST00000020710.11	chr11	-	1897	10	FSM	ENSMUSG00000020432.13	ENSMUST00000020710.11	1897	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	3881995	3867191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881585_3881975
ENSMUST00000020717.12	chr6	+	592	6	FSM	ENSMUSG00000020440.14	ENSMUST00000020717.12	1116	6	30	494	0	-238	multi-exon	TRUE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTATGATGGGCTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	28423588	28426107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_28423755_28424288_28424370_28424720_28424831_28425171_28425244_28425737_28425864_28426070
ENSMUST00000020717.12-1	chr6	+	573	6	FSM	ENSMUSG00000020440.14	ENSMUST00000020717.12	1116	6	149	394	119	-138	multi-exon	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGACCAGACTCCCGGACT	NA	NA	NA	NA	NA	NA	NA	NA	28423707	28426207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_28423755_28424288_28424370_28424720_28424831_28425171_28425244_28425737_28425864_28426070
ENSMUST00000020719.7	chr11	+	923	7	FSM	ENSMUSG00000020441.7	ENSMUST00000020719.7	1285	7	0	362	0	-362	multi-exon	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGCCAAGTAGCTACCAGC	NA	NA	NA	NA	NA	NA	NA	NA	59099146	59101202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_59099500_59099645_59099692_59099794_59099878_59099953_59100027_59100133_59100220_59100798_59100931_59101052
ENSMUST00000020721.15	chr11	-	3335	21	FSM	ENSMUSG00000020439.18	ENSMUST00000020721.15	3335	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGACTTTTCTCTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	3489292	3467522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3467828_3470751_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3489111
ENSMUST00000020794.6	chr11	+	866	4	FSM	ENSMUSG00000020492.12	ENSMUST00000020794.6	3037	4	17	2154	17	-2154	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCCTTTGCTATCACGC	NA	NA	NA	NA	NA	NA	NA	NA	87000076	87013307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_87000131_87006929_87007017_87008493_87008671_87012759
ENSMUST00000020826.6	chr11	+	927	4	FSM	ENSMUSG00000020519.6	ENSMUST00000020826.6	1151	4	0	224	0	-224	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATTTCATCTACATGGTG	NA	NA	NA	NA	NA	NA	NA	NA	57692462	57700819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_57693116_57696869_57696993_57698849_57698949_57700767
ENSMUST00000020849.9	chr11	-	4308	16	FSM	ENSMUSG00000020541.13	ENSMUST00000020849.9	4308	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTCCCTGTTGGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	90578433	90534290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90563658_90563764_90564489_90564613_90565495_90565646_90574060_90574140_90575887_90575973_90578338
ENSMUST00000020856.6	chr12	-	1871	12	FSM	ENSMUSG00000020547.6	ENSMUST00000020856.6	1871	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATATGGTCAGAGCGTGT	NA	NA	NA	NA	NA	NA	NA	NA	36206824	36141833	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
ENSMUST00000020877.9	chr12	+	4325	4	FSM	ENSMUSG00000020561.9	ENSMUST00000020877.9	4325	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTCTTGTACAGCGACAT	NA	NA	NA	NA	NA	NA	NA	NA	33479633	33491391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_33479908_33483503_33483646_33486934_33487144_33487691
ENSMUST00000020909.4	chr12	+	1166	7	FSM	ENSMUSG00000020585.5	ENSMUST00000020909.4	1773	7	0	607	0	-607	multi-exon	FALSE	canonical	NA	NA	NA	NA	428	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGCTGTGAAGATTCCT	NA	NA	NA	NA	NA	NA	NA	NA	8971663	8988135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_8972295_8981627_8981749_8984695_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
ENSMUST00000020927.10	chr12	+	1797	7	FSM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	0	1162	0	-1162	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCCCACGAGAGGGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	8363431	8392662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_8363498_8367784_8367951_8371518_8371727_8373869_8374102_8386237_8386396_8387632_8387769_8391831
ENSMUST00000020930.14	chr11	+	2544	4	FSM	ENSMUSG00000020611.15	ENSMUST00000020930.14	6160	4	0	3616	0	-3616	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGCCCATGAGGTAGCT	NA	NA	NA	NA	NA	NA	NA	NA	109253656	109288579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_109254083_109256361_109256589_109283171_109283223_109286739
ENSMUST00000020947.7	chr12	+	1480	2	FSM	ENSMUSG00000020621.7	ENSMUST00000020947.7	1480	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	364	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGTGCATTTCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	10440771	10445562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_10441227_10444537
ENSMUST00000020957.13	chr12	+	1652	4	FSM	ENSMUSG00000020629.13	ENSMUST00000020957.13	1652	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	537	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTCTCTCGAGAGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	28725229	28732174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_28725372_28727776_28727897_28729388_28729569_28730964
ENSMUST00000020959.9	chr12	+	928	8	FSM	ENSMUSG00000020630.10	ENSMUST00000020959.9	1455	8	22	505	22	-505	multi-exon	TRUE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTGCTGCCGACTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	28699622	28709083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_28699816_28702023_28702140_28703061_28703224_28705583_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
ENSMUST00000020974.7	chr12	-	1270	3	FSM	ENSMUSG00000020644.10	ENSMUST00000020974.7	1270	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCGGGATTCTGAATGG	NA	NA	NA	NA	NA	NA	NA	NA	25146091	25143799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_25144576_25145309_25145374_25145661
ENSMUST00000020977.4	chr12	-	1112	7	FSM	ENSMUSG00000020648.4	ENSMUST00000020977.4	1773	7	50	611	50	-611	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGGAACCACATGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	31704775	31690659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_31690944_31691500_31691728_31692762_31692886_31696619_31696738_31698764_31698887_31702289_31702441_31704688
ENSMUST00000020979.9	chr12	-	1349	7	FSM	ENSMUSG00000020650.16	ENSMUST00000020979.9	1949	7	264	336	46	-245	multi-exon	FALSE	canonical	NA	NA	NA	NA	710	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAATGTATGCCCATTTG	NA	NA	NA	NA	NA	NA	NA	NA	31684334	31645695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_31646377_31650642_31650744_31667073_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261
ENSMUST00000020980.12	chr12	+	1155	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	0	1038	0	-1038	multi-exon	FALSE	canonical	NA	NA	NA	NA	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGGAAAATATCTCACTAG	NA	NA	NA	NA	NA	NA	NA	NA	24758239	24763107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
ENSMUST00000020986.15	chr12	+	1610	7	FSM	ENSMUSG00000020657.17	ENSMUST00000020986.15	4698	7	46	3042	0	-1640	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCCAGTGCTAAGAGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	4132628	4157564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_4132874_4135953_4136037_4139133_4139204_4146212_4146378_4147223_4147347_4153053_4153215_4156801
ENSMUST00000020997.15	chr12	+	1750	10	FSM	ENSMUSG00000020669.16	ENSMUST00000020997.15	1750	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTTTGTGTTCACTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	30961666	31010161	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_30962227_30972233_30972345_30974762_30974877_30976808_30976874_30989572_30989686_30990289_30990419_30991965_30992129_30992788_30992868_31008846_31008904_31009802
ENSMUST00000020999.7	chr12	+	3903	8	FSM	ENSMUSG00000020668.11	ENSMUST00000020999.7	6791	8	2128	760	2128	-760	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTCTGTCAGAACCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	3417317	3455734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_3417532_3437551_3437654_3438134_3438258_3439622_3439742_3440437_3440555_3451682_3451792_3452433_3452607_3452788
ENSMUST00000021011.3	chr11	+	541	3	FSM	ENSMUSG00000035373.3	ENSMUST00000021011.3	801	3	0	260	0	-260	multi-exon	FALSE	canonical	NA	NA	NA	NA	349	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTAATTAGCCATGTACT	NA	NA	NA	NA	NA	NA	NA	NA	81936537	81938091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_81936686_81937343_81937456_81937810
ENSMUST00000021030.8	chr11	+	1867	9	FSM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAATAAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	105017250	105031220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
ENSMUST00000021050.14	chr11	+	1785	11	FSM	ENSMUSG00000020709.16	ENSMUST00000021050.14	1785	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAACAACAAAAACTACAG	NA	NA	NA	NA	NA	NA	NA	NA	80044930	80069784	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_80045136_80045815_80045947_80047770_80047863_80050988_80051069_80052973_80053087_80056498_80056646_80061503_80061588_80064913_80064977_80066881_80066960_80067871_80068101_80069221
ENSMUST00000021063.13-1	chr11	+	1568	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	44	292	0	148	multi-exon	FALSE	canonical	NA	NA	NA	NA	425	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACTCTCTGATTTCATGA	NA	NA	NA	NA	NA	NA	NA	NA	107370353	107388707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
ENSMUST00000021065.6	chr11	-	1249	4	FSM	ENSMUSG00000020722.6	ENSMUST00000021065.6	1249	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1610	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTTTTTCCCATATGCC	NA	NA	NA	NA	NA	NA	NA	NA	107607348	107594043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_107594717_107595130_107595269_107596602_107596678_107606985
ENSMUST00000021077.4	chr11	+	1402	6	FSM	ENSMUSG00000020733.4	ENSMUST00000021077.4	1925	6	0	523	0	-523	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTTCCCTCACCTTAG	NA	NA	NA	NA	NA	NA	NA	NA	115054166	115071484	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_115054778_115067176_115067339_115068049_115068204_115069875_115069917_115070832_115070923_115071140
ENSMUST00000021082.7	chr11	-	858	5	FSM	ENSMUSG00000020736.13	ENSMUST00000021082.7	858	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGATCTTTGATGCT	NA	NA	NA	NA	NA	NA	NA	NA	115382688	115381245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_115381571_115381678_115381794_115381963_115382025_115382096_115382198_115382432
ENSMUST00000021083.7	chr11	-	1375	5	FSM	ENSMUSG00000020737.13	ENSMUST00000021083.7	1375	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCGTGTTTTGTCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	115405213	115388178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_115389126_115391491_115391511_115392830_115392929_115393857_115394001_115405045
ENSMUST00000021084.10	chr11	-	1000	4	NNC	ENSMUSG00000020738.17	novel	1051	4	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	314	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	115427055	115413927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_115414596_115421171_115421244_115425381_115425510_115426923
ENSMUST00000021087.14	chr11	-	1372	6	FSM	ENSMUSG00000020743.16	ENSMUST00000021087.14	1372	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	NA	NA	NA	NA	NA	NA	NA	115503795	115498743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503610
ENSMUST00000021089.11	chr11	-	2307	7	FSM	ENSMUSG00000020744.14	ENSMUST00000021089.11	2307	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTGACTGCAGACCATT	NA	NA	NA	NA	NA	NA	NA	NA	115518971	115505003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024_115515195_115518890
ENSMUST00000021116.12	chr11	+	3735	16	FSM	ENSMUSG00000020770.14	ENSMUST00000021116.12	3735	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGCTTGTTTATATGGGA	NA	NA	NA	NA	NA	NA	NA	NA	115921147	115952040	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_115921318_115938502_115938713_115939810_115939988_115940139_115940271_115940862_115940999_115941512_115941631_115942283_115942369_115943841_115943985_115944315_115944517_115945222_115945289_115945662_115945838_115946806_115946909_115947016_115947206_115949068_115949251_115949814_115950073_115950648
ENSMUST00000021130.7	chr11	+	902	4	FSM	ENSMUSG00000020778.13	ENSMUST00000021130.7	902	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	454	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGTGTGCTGATGCGG	NA	NA	NA	NA	NA	NA	NA	NA	116089680	116106144	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_116089810_116095670_116095806_116096436_116096595_116105664
ENSMUST00000021133.16	chr11	-	2526	16	FSM	ENSMUSG00000020780.16	ENSMUST00000021133.16	2526	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCTGGTTTTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	116165043	116135991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116159099_116159214_116162738_116162806_116164751
ENSMUST00000021134.10	chr11	+	1616	11	FSM	ENSMUSG00000020781.15	ENSMUST00000021134.10	1979	11	22	341	-10	-31	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTGGGGGGGCCTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	115705571	115713579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_115705646_115705740_115705906_115706000_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
ENSMUST00000021148.13	chr11	+	1517	6	FSM	ENSMUSG00000020794.14	ENSMUST00000021148.13	3815	6	36	2262	36	-2262	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACATTTTCTGGCTGTTGA	NA	NA	NA	NA	NA	NA	NA	NA	72498144	72575045	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_72498462_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
ENSMUST00000021158.4-1	chr11	+	655	4	FSM	ENSMUSG00000020803.4	ENSMUST00000021158.4	981	4	68	258	68	-258	multi-exon	FALSE	canonical	NA	NA	NA	NA	441	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATCTAAACAATAAAGAATT	NA	NA	NA	NA	NA	NA	NA	NA	72098440	72100583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_72098595_72099078_72099161_72099555_72099632_72100240
ENSMUST00000021170.9	chr11	-	2063	4	FSM	ENSMUSG00000020814.14	ENSMUST00000021170.9	2063	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCCGTTCTTAAACGTT	NA	NA	NA	NA	NA	NA	NA	NA	116718872	116693887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_116695481_116702748_116702843_116707010_116707069_116718554
ENSMUST00000021173.14	chr11	+	1402	13	FSM	ENSMUSG00000020818.17	ENSMUST00000021173.14	3298	13	206	1690	-52	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	759	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAAAACAAGTGTCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	116744851	116764771	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
ENSMUST00000021187.12	chr11	+	1421	5	FSM	ENSMUSG00000020834.18	ENSMUST00000021187.12	1779	5	79	279	7	-277	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGAGACTTTGTGGTTGA	NA	NA	NA	NA	NA	NA	NA	NA	77923184	77928413	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_77923325_77923410_77923530_77924838_77924963_77925100_77925413_77927687
ENSMUST00000021203.7	chr11	+	1810	4	FSM	ENSMUSG00000020843.16	ENSMUST00000021203.7	2817	4	62	945	62	-945	multi-exon	FALSE	canonical	NA	NA	NA	NA	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTTCTTTGGCTTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	76298030	76306173	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_76298269_76300467_76300665_76301952_76302026_76304871
ENSMUST00000021207.7	chr11	-	3512	3	FSM	ENSMUSG00000020846.7	ENSMUST00000021207.7	3512	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGGAATGCGTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	75918608	75910019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_75913067_75915773_75915884_75918253
ENSMUST00000021217.11	chr11	-	1012	5	FSM	ENSMUSG00000020857.12	ENSMUST00000021217.11	1012	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5467	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGTGTTCAGTACTCA	NA	NA	NA	NA	NA	NA	NA	NA	93847085	93840639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93846651
ENSMUST00000021243.16	chr11	+	1078	9	FSM	ENSMUSG00000020873.16	ENSMUST00000021243.16	1523	9	214	231	214	-231	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGGCTTCCTCTACTCCA	NA	NA	NA	NA	NA	NA	NA	NA	95275731	95282371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
ENSMUST00000021251.7	chr11	-	1336	8	FSM	ENSMUSG00000020878.7	ENSMUST00000021251.7	1336	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAATGCTTTTCATGTTA	NA	NA	NA	NA	NA	NA	NA	NA	96932233	96925427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_96925851_96926284_96926431_96926697_96926768_96926921_96927032_96927295_96927343_96929597_96929707_96931692_96931799_96931908
ENSMUST00000021273.13	chr11	+	918	5	FSM	ENSMUSG00000020894.17	ENSMUST00000021273.13	2205	5	53	1234	-31	449	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCTGAGACTGGTTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	68979368	68981976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_68979454_68979931_68980053_68980556_68980716_68980801_68980854_68981475
ENSMUST00000021285.14	chr11	+	1605	8	FSM	ENSMUSG00000020903.14	ENSMUST00000021285.14	4394	8	0	2789	0	-2789	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCGTCCTTCAAGATTGAT	NA	NA	NA	NA	NA	NA	NA	NA	67857018	68095185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388_67875500_67902140_67902266_67911731_67911825_68000102_68000205_68094531
ENSMUST00000021307.10	chr11	+	1841	5	FSM	ENSMUSG00000020930.10	ENSMUST00000021307.10	1841	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCGCCTCTGCAGTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	102772029	102776042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_102772142_102773177_102773258_102773370_102773523_102773899_102774033_102774678
ENSMUST00000021313.9	chr11	-	1744	5	FSM	ENSMUSG00000020935.9	ENSMUST00000021313.9	1744	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	102907994	102884872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102907875
ENSMUST00000021314.8	chr11	+	4861	12	FSM	ENSMUSG00000020936.9	ENSMUST00000021314.8	4861	12	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	752	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTCTCCTGGTGTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	102919171	102959738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_102919529_102933993_102934103_102937204_102937350_102943031_102943151_102946023_102946116_102947208_102947326_102948190_102948362_102949030_102949140_102950903_102951075_102954633_102954802_102955555_102955694_102956573
ENSMUST00000021329.14	chr11	-	1378	6	FSM	ENSMUSG00000020946.14	ENSMUST00000021329.14	3266	6	140	1748	-35	-116	multi-exon	TRUE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAGTCACCAATGTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	103588584	103569422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ENSMUST00000021332.10	chr12	-	1022	7	FSM	ENSMUSG00000020949.10	ENSMUST00000021332.10	1022	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGTGTGTTCTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	65120781	65109197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
ENSMUST00000021335.7	chr12	+	2096	25	FSM	ENSMUSG00000020952.11	ENSMUST00000021335.7	2096	25	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTATTCTTGTTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	51424362	51496884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462297_51462380_51469689_51469787_51472820_51472892_51474647_51474728_51478270_51478334_51480013_51480090_51486065_51486120_51489313_51489367_51491766_51491801_51492453_51492520_51494354_51494424_51496689
ENSMUST00000021338.10	chr12	+	687	6	FSM	ENSMUSG00000020955.10	ENSMUST00000021338.10	1035	6	0	348	0	-348	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGATGAGATGGTGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	51737819	51785367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_51738098_51763724_51763934_51767418_51767506_51769762_51769832_51777670_51777683_51785335
ENSMUST00000021356.6	chr12	-	3390	3	FSM	ENSMUSG00000020973.8	ENSMUST00000021356.6	3390	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	469	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTTACCTACATTCTC	NA	NA	NA	NA	NA	NA	NA	NA	69245203	69235860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_69237169_69239581_69239726_69243265
ENSMUST00000021362.5	chr12	+	1905	13	FSM	ENSMUSG00000020978.11	ENSMUST00000021362.5	1905	13	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	852	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGACTTTTTATCCCACG	NA	NA	NA	NA	NA	NA	NA	NA	69343495	69357461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_69343922_69346989_69347070_69349097_69349216_69350307_69350424_69350654_69350737_69351317_69351402_69352401_69352483_69352556_69352616_69353963_69354074_69354391_69354465_69355731_69355820_69356760_69356814_69356926
ENSMUST00000021379.8	chr12	+	1588	10	FSM	ENSMUSG00000060121.16	ENSMUST00000021379.8	1588	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTAGTTTAATTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	59060178	59075256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
ENSMUST00000021381.6	chr12	+	1120	9	FSM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	38	2327	20	1374	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGATGCAGAGAAAGAACAG	NA	NA	NA	NA	NA	NA	NA	NA	59113707	59118457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
ENSMUST00000021405.8	chr16	+	668	5	FSM	ENSMUSG00000021018.9	ENSMUST00000021405.8	950	5	165	117	0	-114	multi-exon	FALSE	canonical	NA	NA	NA	NA	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTGTCTGAATGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	20536579	20540900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_20536745_20537573_20537658_20537740_20537835_20539268_20539353_20540659
ENSMUST00000021405.8-1	chr16	+	690	5	FSM	ENSMUSG00000021018.9	ENSMUST00000021405.8	950	5	0	260	0	-257	multi-exon	FALSE	canonical	NA	NA	NA	NA	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGAAGCTGGCCTTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	20536414	20540757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_20536745_20537573_20537658_20537740_20537835_20539268_20539353_20540659
ENSMUST00000021406.6	chr12	-	1105	8	FSM	ENSMUSG00000062198.6	ENSMUST00000021406.6	1105	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGCTCTTTTATTTGT	NA	NA	NA	NA	NA	NA	NA	NA	55126895	55092445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765
ENSMUST00000021407.11	chr12	+	1515	15	FSM	ENSMUSG00000073079.7	ENSMUST00000021407.11	1515	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACGCCCCCTTACTAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	55135986	55159676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_55136065_55136920_55137013_55138033_55138119_55142599_55142705_55143893_55143961_55144040_55144099_55146697_55146849_55148124_55148274_55148607_55148709_55149252_55149340_55151975_55152050_55152401_55152511_55155286_55155458_55157870_55157967_55159584
ENSMUST00000021416.9	chr12	-	1512	9	FSM	ENSMUSG00000021028.9	ENSMUST00000021416.9	1512	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGTCTTTTTTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	56392679	56375087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_56375585_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
ENSMUST00000021425.8	chr12	+	1030	9	FSM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	12	335	12	-335	multi-exon	TRUE	canonical	NA	NA	NA	NA	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCATGGAAGGCCGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	87313483	87320418	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
ENSMUST00000021425.8-1	chr12	+	1010	9	FSM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	160	207	160	-207	multi-exon	FALSE	canonical	NA	NA	NA	NA	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGGGTTCTGGCCCTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	87313631	87320546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
ENSMUST00000021471.13	chr12	+	1199	8	FSM	ENSMUSG00000021072.13	ENSMUST00000021471.13	2795	8	0	1596	0	359	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATTACTGGAGTATTTAA	NA	NA	NA	NA	NA	NA	NA	NA	70499868	70513218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_70500095_70502785_70502902_70503354_70503401_70505552_70505682_70507118_70507165_70507252_70507355_70511173_70511241_70512751
ENSMUST00000021522.5	chr12	+	316	2	FSM	ENSMUSG00000021102.5	ENSMUST00000021522.5	2925	2	0	2609	0	1676	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACCATCCCGCAAGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	104998948	105006556	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_104999242_105006533
ENSMUST00000021523.7	chr12	+	2505	8	FSM	ENSMUSG00000021103.13	ENSMUST00000021523.7	2505	8	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	284	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGACTTAGAAATCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	73170490	73320762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_73170701_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
ENSMUST00000021532.6	chr12	+	1317	10	FSM	ENSMUSG00000021113.6	ENSMUST00000021532.6	6275	10	0	4958	0	-4958	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGAGATGGAAGAGCATG	NA	NA	NA	NA	NA	NA	NA	NA	74011299	74030782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_74011521_74014681_74014842_74015012_74015154_74016300_74016406_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029251_74029354_74030636
ENSMUST00000021548.12	chr12	+	1165	7	FSM	ENSMUSG00000021123.13	ENSMUST00000021548.12	1678	7	33	480	16	-479	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCTTCGGGAACCCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	79255720	79268959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_79255883_79257614_79257734_79258161_79258318_79259426_79259532_79260317_79260528_79265449_79265640_79268736
ENSMUST00000021559.14	chr12	-	1293	4	FSM	ENSMUSG00000021131.15	ENSMUST00000021559.14	1293	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6013	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTTTTCTTATTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	80691115	80680795	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80690537
ENSMUST00000021594.5	chr12	+	2019	15	FSM	ENSMUSG00000021177.17	ENSMUST00000021594.5	2019	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTGTACAGGCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	99857431	99921473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
ENSMUST00000021595.10	chr12	+	1591	11	FSM	ENSMUSG00000021178.10	ENSMUST00000021595.10	1591	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1543	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGGGAAGAGTTCATTTT	NA	NA	NA	NA	NA	NA	NA	NA	100076412	100089664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100085522_100086245_100086398_100087251_100087407_100089316
ENSMUST00000021609.10	chr12	+	3390	13	FSM	ENSMUSG00000021192.17	ENSMUST00000021609.10	3390	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGAGTGCTTTATATTTT	NA	NA	NA	NA	NA	NA	NA	NA	102435450	102464166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_102436241_102438256_102438825_102440804_102441033_102442428_102442649_102443055_102443180_102445856_102446061_102450662_102450834_102453378_102453508_102455677_102455777_102458271_102458498_102460012_102460119_102461958_102462023_102463705
ENSMUST00000021614.14	chr13	-	2679	22	FSM	ENSMUSG00000021196.15	ENSMUST00000021614.14	2679	22	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCCCATGGTACTTGG	NA	NA	NA	NA	NA	NA	NA	NA	6698761	6631217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6643136_6643290_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
ENSMUST00000021620.13	chr12	+	1056	6	FSM	ENSMUSG00000021203.16	ENSMUST00000021620.13	2791	6	68	1667	68	-1661	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTACCCATTTACTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	103355024	103370937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_103355133_103366454_103366551_103367207_103367327_103369075_103369161_103369492_103369688_103370484
ENSMUST00000021634.4	chr13	+	1262	9	FSM	ENSMUSG00000021213.13	ENSMUST00000021634.4	1262	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATATTTTCTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	4241148	4255595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_4241310_4244032_4244201_4244675_4244793_4246431_4246510_4246987_4247111_4247799_4247910_4248476_4248643_4253365_4253449_4255339
ENSMUST00000021661.13	chr12	+	1602	12	FSM	ENSMUSG00000021235.14	ENSMUST00000021661.13	1602	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTTTTCCTCTTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	84408741	84420570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
ENSMUST00000021667.7	chr12	+	883	4	FSM	ENSMUSG00000021241.8	ENSMUST00000021667.7	883	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTCTTATCGTGTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	84820024	84821859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_84820146_84820348_84820452_84820566_84820683_84821316
ENSMUST00000021674.7	chr12	+	1429	4	FSM	ENSMUSG00000021250.14	ENSMUST00000021674.7	2108	4	0	679	0	-679	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCTGTGGGCCTCAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	85520663	85523368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_85520955_85521708_85521961_85522365_85522474_85522590
ENSMUST00000021685.8	chr12	+	2603	9	FSM	ENSMUSG00000021260.9	ENSMUST00000021685.8	5174	9	278	2293	278	-2293	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGTCCGATGCACCGCAG	NA	NA	NA	NA	NA	NA	NA	NA	108272806	108294835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_108272943_108277946_108278594_108282709_108282854_108284712_108285042_108285584_108285712_108286214_108286361_108288061_108288144_108293384_108293468_108293926
ENSMUST00000021693.4	chr12	-	1976	4	FSM	ENSMUSG00000021265.4	ENSMUST00000021693.4	1976	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAAGCTCCTCTGTGCGT	NA	NA	NA	NA	NA	NA	NA	NA	108801809	108791798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_108793415_108793599_108793684_108797122_108797167_108801577
ENSMUST00000021714.9-1	chr12	+	768	7	FSM	ENSMUSG00000021286.9	ENSMUST00000021714.9	1308	7	71	469	6	-434	multi-exon	FALSE	canonical	NA	NA	NA	NA	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCAGGGTCTTCCCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	111780674	111794351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111793976_111794120_111794251
ENSMUST00000021719.7	chr12	-	366	4	FSM	ENSMUSG00000021290.7	ENSMUST00000021719.7	366	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGCTTCCCCTGAGTA	NA	NA	NA	NA	NA	NA	NA	NA	111933411	111927808	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_111927973_111928866_111928891_111929663_111929788_111933357
ENSMUST00000021728.12	chr12	+	924	4	FSM	ENSMUSG00000064326.14	ENSMUST00000021728.12	924	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1280	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	112611112	112615579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_112611519_112613271_112613467_112614258_112614416_112615413
ENSMUST00000021738.10	chr13	-	2971	7	FSM	ENSMUSG00000021306.12	ENSMUST00000021738.10	2971	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTCAACTGGTGCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	13568199	13532204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_13534009_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
ENSMUST00000021761.13	chr13	+	2893	8	FSM	ENSMUSG00000021326.14	ENSMUST00000021761.13	4204	8	0	1311	0	549	multi-exon	TRUE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACACAAAAGTAGTGGTC	NA	NA	NA	NA	NA	NA	NA	NA	21364100	21377582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_21365085_21366153_21366250_21367901_21368133_21372210_21372234_21374024_21374141_21374261_21374295_21375389_21375417_21376199
ENSMUST00000021778.14	chr13	+	844	5	FSM	ENSMUSG00000055360.14	ENSMUST00000021778.14	844	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAAAGTCTCAATGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	13357299	13366508	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_13357398_13360374_13360551_13363952_13364061_13365170_13365354_13366229
ENSMUST00000021790.7	chr13	+	914	6	FSM	ENSMUSG00000021361.8	ENSMUST00000021790.7	914	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	417	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGTCGTCTTTGTTAG	NA	NA	NA	NA	NA	NA	NA	NA	41169767	41176062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_41169875_41170590_41170650_41171181_41171259_41171831_41171934_41174594_41174683_41175581
ENSMUST00000021800.6	chr13	-	4339	9	FSM	ENSMUSG00000021371.6	ENSMUST00000021800.6	4339	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTGTACAGTGTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	43713637	43691868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_43695206_43697931_43698047_43699163_43699218_43702126_43702199_43703007_43703050_43704472_43704575_43705072_43705177_43708371_43708492_43713244
ENSMUST00000021818.9	chr13	-	1144	8	FSM	ENSMUSG00000021391.11	ENSMUST00000021818.9	1144	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGTGCTTTGTACAGTT	NA	NA	NA	NA	NA	NA	NA	NA	49806261	49617498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49801041_49801131_49803596_49803776_49806058
ENSMUST00000021820.14	chr13	+	2310	8	FSM	ENSMUSG00000021388.15	ENSMUST00000021820.14	2310	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCTCTGGTTTAATTT	NA	NA	NA	NA	NA	NA	NA	NA	49697962	49721041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_49698194_49705116_49705393_49707395_49707509_49710722_49710937_49712266_49712378_49716916_49717011_49717231_49717371_49719909
ENSMUST00000021843.13	chr13	+	1063	8	FSM	ENSMUSG00000046949.17	ENSMUST00000021843.13	1063	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTTGCACTGTATTAG	NA	NA	NA	NA	NA	NA	NA	NA	34148733	34169629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_34148784_34150027_34150110_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
ENSMUST00000021854.14	chr13	-	1746	10	FSM	ENSMUSG00000021417.16	ENSMUST00000021854.14	1746	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTTAAGAATTCATGTTG	NA	NA	NA	NA	NA	NA	NA	NA	35178264	35161731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177812
ENSMUST00000021866.10	chr13	+	2738	17	FSM	ENSMUSG00000021428.10	ENSMUST00000021866.10	2738	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTTGCATTCTTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	38220970	38245409	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243915_38244069_38244730
ENSMUST00000021880.10	chr13	-	1373	5	FSM	ENSMUSG00000044258.11	ENSMUST00000021880.10	1373	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	354	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCCCTAAATTGTTTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	61084439	61081968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_61082843_61083143_61083267_61083360_61083484_61083771_61083890_61084304
ENSMUST00000021884.10	chr13	-	842	5	FSM	ENSMUSG00000074874.11	ENSMUST00000021884.10	842	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTTCTGGTTTGGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	61045261	61043168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_61043534_61043834_61043958_61044051_61044175_61044441_61044560_61045148
ENSMUST00000021903.3	chr13	+	1071	4	FSM	ENSMUSG00000021453.3	ENSMUST00000021903.3	1071	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2705	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAACTTAATGCCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	52000713	52002504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_52000869_52001387_52001490_52001591_52001806_52001904
ENSMUST00000021922.10	chr13	-	1398	2	FSM	ENSMUSG00000021469.10	ENSMUST00000021922.10	2453	2	0	1055	0	-1055	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAGTTTTTATGTATAAA	NA	NA	NA	NA	NA	NA	NA	NA	53627110	53621974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_53622630_53626367
ENSMUST00000021930.10	chr13	+	1353	11	FSM	ENSMUSG00000021474.10	ENSMUST00000021930.10	2783	11	0	1430	0	-1430	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTACCTGTGCAACCACCA	NA	NA	NA	NA	NA	NA	NA	NA	54225887	54260931	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
ENSMUST00000021933.8	chr13	-	1971	8	FSM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCAAGTCTCATATCTG	NA	NA	NA	NA	NA	NA	NA	NA	64518120	64511027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
ENSMUST00000021937.12	chr13	+	823	7	FSM	ENSMUSG00000021481.12	ENSMUST00000021937.12	3333	7	72	2438	66	-318	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTAAAGCTGTCCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	55253211	55280200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_55253332_55260848_55260953_55261490_55261584_55263292_55263438_55270142_55270329_55278346_55278441_55280119
ENSMUST00000021939.8	chr13	+	2391	8	FSM	ENSMUSG00000021483.9	ENSMUST00000021939.8	4118	8	41	1686	41	1107	multi-exon	TRUE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAGGATCTTAACTATCCA	NA	NA	NA	NA	NA	NA	NA	NA	64580168	64587901	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_64580485_64580790_64580905_64583931_64584121_64584306_64584429_64584579_64584643_64585202_64585327_64585690_64585847_64586594
ENSMUST00000021942.8	chr13	+	740	5	FSM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	1519	385	-32	-77	multi-exon	FALSE	canonical	NA	NA	NA	NA	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGACCGCACTGGCAGCTA	NA	NA	NA	NA	NA	NA	NA	NA	55469831	55472700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642
ENSMUST00000021958.6	chr13	+	544	4	FSM	ENSMUSG00000021496.13	ENSMUST00000021958.6	544	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGAGTTATTTGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	55875180	55924641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_55875288_55880748_55880881_55923179_55923261_55924417
ENSMUST00000021959.11	chr13	+	1527	5	FSM	ENSMUSG00000021497.11	ENSMUST00000021959.11	1527	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1785	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGGTTTCGCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	55862462	55874040	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_55862658_55865604_55866081_55869391_55869556_55872320_55872452_55873479
ENSMUST00000021963.5	chr13	+	1382	4	FSM	ENSMUSG00000021501.5	ENSMUST00000021963.5	1382	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAGAAGTCTGTACATT	NA	NA	NA	NA	NA	NA	NA	NA	55770817	55780224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_55771070_55772523_55772985_55776389_55776456_55779621
ENSMUST00000021991.11	chr13	-	1479	8	FSM	ENSMUSG00000021519.12	ENSMUST00000021991.11	1479	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTTTCAATATTA	NA	NA	NA	NA	NA	NA	NA	NA	67081152	67060181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUST00000021993.5	chr13	-	535	4	FSM	ENSMUSG00000021520.5	ENSMUST00000021993.5	535	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2275	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGATTATTTGAATTCAA	NA	NA	NA	NA	NA	NA	NA	NA	67053442	67048680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_67048891_67049465_67049633_67050793_67050866_67053356
ENSMUST00000021997.8	chr13	+	2591	4	FSM	ENSMUSG00000058900.6	ENSMUST00000021997.8	2591	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGTATCTCATCTTA	NA	NA	NA	NA	NA	NA	NA	NA	67321245	67332108	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_67321318_67324511_67324639_67325128_67325225_67329812
ENSMUST00000022060.7	chr13	-	1131	6	FSM	ENSMUSG00000021576.7	ENSMUST00000022060.7	1131	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGGCTGGTTTTTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	74465440	74451627	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_74452168_74453659_74453770_74457802_74457962_74459786_74459832_74464448_74464511_74465225
ENSMUST00000022078.12	chr13	-	4980	12	FSM	ENSMUSG00000021589.14	ENSMUST00000022078.12	4980	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAATGAAGTGTTCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	76091986	76017655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_76020581_76024289_76024387_76025491_76025659_76026915_76027090_76041024_76041146_76050296_76050410_76058748_76059115_76061461_76061574_76065811_76065967_76087570_76087758_76091325_76091552_76091649
ENSMUST00000022082.8-1	chr13	+	680	3	FSM	ENSMUSG00000021591.9	ENSMUST00000022082.8	1345	3	208	457	166	243	multi-exon	FALSE	canonical	NA	NA	NA	NA	233	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCTTACTTAGCCAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	75988194	75997813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_75988295_75995288_75995418_75997362
ENSMUST00000022097.6	chr13	-	568	4	FSM	ENSMUSG00000021606.9	ENSMUST00000022097.6	568	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGAGTTGTTTCTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	73476661	73467992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476457
ENSMUST00000022099.15	chr13	+	1512	14	FSM	ENSMUSG00000021608.16	ENSMUST00000022099.15	3675	14	226	1937	226	-640	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCTGAGAACTCAGACTTT	NA	NA	NA	NA	NA	NA	NA	NA	73615541	73662604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_73615637_73632379_73632523_73637005_73637221_73642920_73643034_73644298_73644360_73647417_73647477_73649474_73649510_73651159_73651215_73653620_73653704_73658114_73658241_73658966_73659121_73659418_73659518_73661938_73662081_73662472
ENSMUST00000022115.14	chr13	-	1540	8	FSM	ENSMUSG00000021615.14	ENSMUST00000022115.14	1540	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATGTTATTTAACTG	NA	NA	NA	NA	NA	NA	NA	NA	90237727	89997039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_89997583_90089080_90089229_90139191_90139284_90140572_90140726_90149036_90149204_90210127_90210304_90219659_90219809_90237615
ENSMUST00000022121.13	chr13	-	1541	6	FSM	ENSMUSG00000021621.16	ENSMUST00000022121.13	1541	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	352	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTTGTTGAACTGATCA	NA	NA	NA	NA	NA	NA	NA	NA	91955824	91944651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_91945374_91946941_91947011_91948729_91948823_91948984_91949136_91953869_91954280_91955728
ENSMUST00000022135.15	chr13	+	739	5	FSM	ENSMUSG00000078941.10	ENSMUST00000022135.15	1298	5	401	158	0	-158	multi-exon	FALSE	canonical	NA	NA	NA	NA	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAGGATGAGCAGAAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	100787887	100802709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_100787954_100790698_100790792_100800402_100800462_100800558_100800705_100802334
ENSMUST00000022145.15	chr13	+	601	3	FSM	ENSMUSG00000021643.16	ENSMUST00000022145.15	601	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTGAATATTATTTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	100244519	100250746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_100244738_100245530_100245640_100250472
ENSMUST00000022147.15	chr13	+	1222	9	FSM	ENSMUSG00000021645.17	ENSMUST00000022147.15	1222	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTGACTTTATAGATA	NA	NA	NA	NA	NA	NA	NA	NA	100261359	100274198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_100261474_100263094_100263167_100263377_100263498_100264312_100264514_100264722_100264870_100267587_100267684_100268863_100268975_100272196_100272248_100273888
ENSMUST00000022169.10	chr13	-	1905	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	580	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGCTGCCCTGTGTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	97334865	97312838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUST00000022203.10	chr13	+	2051	12	FSM	ENSMUSG00000021692.10	ENSMUST00000022203.10	2051	12	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCGCCTACAGTTTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	107083666	107096268	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
ENSMUST00000022218.6	chr13	+	2100	6	FSM	ENSMUSG00000021707.6	ENSMUST00000022218.6	5347	6	0	3247	0	-3247	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCTTAATCATACCAGG	NA	NA	NA	NA	NA	NA	NA	NA	92491233	92522314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232
ENSMUST00000022224.16	chr13	-	2342	13	FSM	ENSMUSG00000021711.18	ENSMUST00000022224.16	2342	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGATTTTTTTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	104314931	104279824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ENSMUST00000022227.8	chr13	+	1217	10	FSM	ENSMUSG00000021714.16	ENSMUST00000022227.8	1217	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	104365895	104386125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_104366165_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
ENSMUST00000022228.13	chr13	-	2071	14	FSM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGCCTCCCGCTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	104953461	104767647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
ENSMUST00000022230.15	chr13	+	1605	5	FSM	ENSMUSG00000021716.15	ENSMUST00000022230.15	2365	5	62	698	62	-698	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAATTGACGACTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	104953746	104975084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_104953875_104963562_104963611_104969361_104969506_104970755_104970829_104973872
ENSMUST00000022242.9	chr13	+	1224	9	FSM	ENSMUSG00000021728.9	ENSMUST00000022242.9	2923	9	472	1227	472	-1227	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTCCATCTCCTACCTAA	NA	NA	NA	NA	NA	NA	NA	NA	117357279	117409724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_117357494_117369262_117369353_117385807_117386001_117386236_117386323_117400930_117401059_117403855_117404136_117405465_117405500_117408580_117408636_117409580
ENSMUST00000022245.10	chr13	-	3319	5	FSM	ENSMUSG00000021731.11	ENSMUST00000022245.10	3319	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTGAGGCCTGAGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	118523788	118514916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_118517206_118519411_118519589_118521102_118521209_118521769_118521916_118523187
ENSMUST00000022260.5	chr14	-	333	1	FSM	ENSMUSG00000021741.5	ENSMUST00000022260.5	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCATTTATTTAAGATCT	NA	NA	NA	NA	NA	NA	NA	NA	9602210	9601877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_9601900_9602200
ENSMUST00000022272.14	chr14	-	1650	3	FSM	ENSMUSG00000021752.15	ENSMUST00000022272.14	1650	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAAGGTTGTATTTATT	NA	NA	NA	NA	NA	NA	NA	NA	14255633	14246209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_14247587_14249552_14249623_14255430
ENSMUST00000022287.8	chr13	-	1851	6	FSM	ENSMUSG00000021765.10	ENSMUST00000022287.8	1851	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTAAACCATTTAAGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	114595485	114589505	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_114590042_114590815_114591047_114591656_114591882_114592219_114592439_114592898_114593091_114595037
ENSMUST00000022293.14	chr14	+	1168	10	FSM	ENSMUSG00000021771.15	ENSMUST00000022293.14	1954	10	297	489	0	-129	multi-exon	FALSE	canonical	NA	NA	NA	NA	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGCTGGTTCCTAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	21881633	21895458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
ENSMUST00000022296.7	chr14	+	950	6	FSM	ENSMUSG00000021774.14	ENSMUST00000022296.7	1408	6	0	458	0	-458	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTAGACAAACTGGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	4137836	4186516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_4138010_4138561_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
ENSMUST00000022296.7-1	chr14	+	930	6	FSM	ENSMUSG00000021774.14	ENSMUST00000022296.7	1408	6	115	363	115	-363	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCATTGATCAGCTTAAATT	NA	NA	NA	NA	NA	NA	NA	NA	4137951	4186611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_4138010_4138561_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
ENSMUST00000022310.7	chr14	-	2935	12	FSM	ENSMUSG00000021785.9	ENSMUST00000022310.7	2935	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAGTGAAAGAGTAGCA	NA	NA	NA	NA	NA	NA	NA	NA	6220483	6157836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_6158905_6159271_6159450_6175089_6175276_6178827_6178993_6186289_6186401_6187877_6188024_6188948_6189071_6191741_6191965_6199122_6199289_6208962_6209200_6215006_6215122_6220265
ENSMUST00000022322.17	chr14	+	3390	13	FSM	ENSMUSG00000021794.17	ENSMUST00000022322.17	3390	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	648	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAGTTCTCTATGGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	34032683	34067222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_34033300_34041838_34041920_34043724_34043781_34047469_34047534_34051245_34051341_34056068_34056249_34057258_34057397_34058049_34058188_34058452_34058534_34060716_34060841_34061883_34061976_34064075_34064139_34065560
ENSMUST00000022341.7	chr14	-	1562	8	FSM	ENSMUSG00000021807.7	ENSMUST00000022341.7	1562	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2425	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAATATACTTGAGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	19873892	19861418	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
ENSMUST00000022380.9	chr14	+	1146	14	FSM	ENSMUSG00000021832.9	ENSMUST00000022380.9	2234	14	73	1015	73	-1015	multi-exon	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGTGTGATTCACTAGA	NA	NA	NA	NA	NA	NA	NA	NA	45567317	45586147	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
ENSMUST00000022429.9-1	chr14	+	1718	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	179	268	-94	176	multi-exon	FALSE	canonical	NA	NA	NA	NA	1614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATGAAGAATTTTAATTTT	NA	NA	NA	NA	NA	NA	NA	NA	26359407	26378145	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
ENSMUST00000022458.11	chr14	+	3460	17	FSM	ENSMUSG00000021901.11	ENSMUST00000022458.11	3460	17	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGAGGTCGGTAGGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	30973406	30981901	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_30973612_30973706_30973737_30973856_30973912_30974884_30975018_30975412_30975533_30975989_30976052_30976123_30976267_30976517_30976597_30977042_30977167_30977469_30977618_30978067_30978253_30978617_30978749_30979245_30979725_30979837_30979999_30980240_30980334_30980414_30980488_30980662
ENSMUST00000022462.14	chr14	+	1431	8	FSM	ENSMUSG00000021906.15	ENSMUST00000022462.14	2376	8	398	547	398	-547	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGGGCCACATTTCAGAT	NA	NA	NA	NA	NA	NA	NA	NA	31807767	31824612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31821345_31821589_31822942_31823052_31824213
ENSMUST00000022517.9	chr14	-	1497	8	FSM	ENSMUSG00000021947.12	ENSMUST00000022517.9	1497	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAATCTATTTCTACAC	NA	NA	NA	NA	NA	NA	NA	NA	57635986	57512449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_57513020_57513373_57513481_57523821_57523928_57541049_57541245_57550424_57550587_57600378_57600506_57620214_57620323_57635864
ENSMUST00000022518.8	chr14	-	836	5	FSM	ENSMUSG00000021951.8	ENSMUST00000022518.8	836	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGTCATGAGGTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	57809026	57787054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_57787337_57787818_57788100_57795490_57795574_57803378_57803542_57808999
ENSMUST00000022528.6	chr14	+	1295	7	FSM	ENSMUSG00000021958.6	ENSMUST00000022528.6	1295	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGAGCCTTTCACATGA	NA	NA	NA	NA	NA	NA	NA	NA	64097812	64157304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_64097897_64101664_64101775_64103551_64103645_64105967_64106047_64109750_64109844_64115560_64115638_64156545
ENSMUST00000022538.5	chr14	+	823	2	FSM	ENSMUSG00000021967.5	ENSMUST00000022538.5	2877	2	0	2054	0	-2054	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTGTCTCACTATATA	NA	NA	NA	NA	NA	NA	NA	NA	58063690	58064699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_58063780_58063965
ENSMUST00000022555.11	chr14	-	1500	10	FSM	ENSMUSG00000021982.15	ENSMUST00000022555.11	1500	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACACTTTGGGGCCCGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	59835285	59798344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_59798371_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
ENSMUST00000022595.8	chr14	-	918	5	FSM	ENSMUSG00000022018.8	ENSMUST00000022595.8	918	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTACTTTGAAAGCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	79539085	79526195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_79526560_79527683_79527747_79529110_79529219_79538154_79538341_79538888
ENSMUST00000022623.13	chr14	+	2409	6	FSM	ENSMUSG00000022043.20	ENSMUST00000022623.13	3678	6	59	1210	-43	1031	multi-exon	FALSE	canonical	NA	NA	NA	NA	405	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGACGAGTCCTGGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	66534538	66547663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_66534999_66540629_66540726_66541453_66541685_66544474_66544498_66545260_66545380_66546183
ENSMUST00000022650.9	chr14	+	2797	18	FSM	ENSMUSG00000022064.11	ENSMUST00000022650.9	2797	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGACTGTAGAGTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	99337342	99491929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994_99459080_99480274_99480446_99491596
ENSMUST00000022705.7	chr14	+	1328	7	FSM	ENSMUSG00000022109.7	ENSMUST00000022705.7	1328	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTTTTTTCAATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	73747464	73755985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
ENSMUST00000022721.8	chr14	+	746	4	FSM	ENSMUSG00000022125.8	ENSMUST00000022721.8	2445	4	0	1699	0	-1699	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACGTGGTTCGAGTCCTAC	NA	NA	NA	NA	NA	NA	NA	NA	103307651	103313365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_103307904_103309069_103309236_103310622_103310849_103313263
ENSMUST00000022791.9	chr15	-	1565	7	FSM	ENSMUSG00000022184.9	ENSMUST00000022791.9	1565	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	877	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCATGGTCTCTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	4009055	3994926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_3995275_3998388_3998565_4000818_4000995_4001110_4001187_4005238_4005460_4007243_4007480_4008723
ENSMUST00000022821.8	chr14	+	1392	8	FSM	ENSMUSG00000022210.8	ENSMUST00000022821.8	1392	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGCGTGTTTATTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	55716214	55727797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724716_55724769_55725040_55725176_55725616_55725673_55727275
ENSMUST00000022828.9	chr14	-	855	5	FSM	ENSMUSG00000022217.15	ENSMUST00000022828.9	855	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTATGTATTTATTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	55822759	55818978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_55819201_55819337_55819433_55819512_55819583_55822135_55822213_55822368
ENSMUST00000022853.15	chr15	+	1040	6	FSM	ENSMUSG00000058914.13	ENSMUST00000022853.15	2338	6	25	1273	0	-829	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGGATGCTTCAGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	10952442	10978963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_10952624_10958042_10958155_10960713_10960869_10972066_10972197_10975676_10975777_10978601
ENSMUST00000022856.15	chr15	+	1073	6	FSM	ENSMUSG00000022248.15	ENSMUST00000022856.15	1514	6	51	390	0	-390	multi-exon	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCCCTGATGAAGAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	10486154	10493385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_10486351_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239
ENSMUST00000022867.5	chr15	+	1902	7	FSM	ENSMUSG00000022257.5	ENSMUST00000022867.5	1902	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	882	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGCTCCGCTGACT	NA	NA	NA	NA	NA	NA	NA	NA	34238173	34284448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_34238569_34258826_34258939_34272489_34272564_34273373_34273497_34276281_34276381_34277577_34277674_34283445
ENSMUST00000022871.7	chr15	+	3527	5	FSM	ENSMUSG00000022261.7	ENSMUST00000022871.7	3527	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2603	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCTGTGTGAGTATTGCT	NA	NA	NA	NA	NA	NA	NA	NA	32920868	33035081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_32921452_33017247_33017360_33023794_33023932_33028192_33028329_33032522
ENSMUST00000022875.7	chr15	+	2029	12	FSM	ENSMUSG00000022265.8	ENSMUST00000022875.7	3498	12	0	1469	0	-1469	multi-exon	FALSE	canonical	NA	NA	NA	NA	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGACTTCACGCCCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	27466762	27593526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_27467186_27544336_27544554_27553774_27553894_27557249_27557334_27562809_27562981_27564987_27565123_27567600_27567694_27571644_27571741_27590428_27590559_27591003_27591128_27591522_27591623_27593189
ENSMUST00000022904.8	chr15	+	2071	13	FSM	ENSMUSG00000022295.9	ENSMUST00000022904.8	2071	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	909	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGCTAGTCATTTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	38662176	38692690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
ENSMUST00000022909.10	chr15	+	1551	11	FSM	ENSMUSG00000022300.11	ENSMUST00000022909.10	1551	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	759	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCAGTTGTGTGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	38976259	39010251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_38976447_38982105_38982306_38982739_38982848_38986607_38986698_38987723_38987880_38991284_38991363_38993610_38993694_39001478_39001644_39007017_39007154_39008485_39008650_39010067
ENSMUST00000022921.7	chr15	-	2689	9	FSM	ENSMUSG00000022309.10	ENSMUST00000022921.7	4260	9	626	945	626	-945	multi-exon	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGTACAAAAGAATTATAGA	NA	NA	NA	NA	NA	NA	NA	NA	42539747	42289063	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_42290527_42301670_42301802_42323062_42323230_42331551_42331654_42339773_42339902_42359622_42359856_42375679_42375802_42386899_42387056_42539560
ENSMUST00000022925.10	chr15	-	1295	8	FSM	ENSMUSG00000022312.12	ENSMUST00000022925.10	1295	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGTGTATTTATGGTG	NA	NA	NA	NA	NA	NA	NA	NA	51728919	51649953	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
ENSMUST00000022962.8	chr15	+	903	11	FSM	ENSMUSG00000022337.8	ENSMUST00000022962.8	1231	11	12	316	12	-316	multi-exon	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGTTGGAGACATTGCA	NA	NA	NA	NA	NA	NA	NA	NA	43340636	43390843	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_43340722_43355565_43355680_43358135_43358201_43358559_43358646_43360456_43360515_43371040_43371127_43371257_43371318_43374210_43374293_43375095_43375207_43377140_43377246_43390792
ENSMUST00000022964.9	chr15	+	1613	7	FSM	ENSMUSG00000022339.10	ENSMUST00000022964.9	1613	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTGTATATCCTTATT	NA	NA	NA	NA	NA	NA	NA	NA	44482986	44504422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_44483339_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
ENSMUST00000022980.5	chr15	+	479	4	FSM	ENSMUSG00000022354.5	ENSMUST00000022980.5	704	4	52	173	52	-173	multi-exon	FALSE	canonical	NA	NA	NA	NA	631	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGAAGCTTTGCCTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	58805656	58811164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_58805788_58808116_58808310_58809200_58809315_58811123
ENSMUST00000022986.8	chr15	-	1746	9	FSM	ENSMUSG00000022358.8	ENSMUST00000022986.8	6976	9	414	4816	109	540	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAACAGCAGAAGTCATG	NA	NA	NA	NA	NA	NA	NA	NA	58077914	58044090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_58044952_58046230_58046375_58047477_58047661_58054680_58054866_58055666_58055761_58068608_58068702_58069594_58069645_58071350_58071464_58077891
ENSMUST00000023036.7	chr15	+	1061	5	FSM	ENSMUSG00000022400.10	ENSMUST00000023036.7	1675	5	48	566	0	417	multi-exon	FALSE	canonical	NA	NA	NA	NA	788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTTGTTTCTAAAACAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	81350544	81360004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_81350652_81352355_81352435_81355152_81355224_81358043_81358130_81359286
ENSMUST00000023043.10	chr15	+	1602	13	FSM	ENSMUSG00000022407.11	ENSMUST00000023043.10	3711	13	47	2062	18	-124	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGGTCTACAAAACAAGT	NA	NA	NA	NA	NA	NA	NA	NA	80832737	80853085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
ENSMUST00000023050.9	chr15	+	1635	11	FSM	ENSMUSG00000022414.9	ENSMUST00000023050.9	2964	11	30	1299	30	-1299	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTCAACCACAGCCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	80017357	80044609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_80017390_80032427_80032565_80032887_80033042_80033982_80034070_80034627_80034767_80036865_80036980_80037832_80037945_80039957_80040103_80041804_80042028_80042951_80043109_80044274
ENSMUST00000023059.13	chr15	-	1324	9	FSM	ENSMUSG00000022422.14	ENSMUST00000023059.13	1324	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATCCCTGACTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	54953887	54939494	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
ENSMUST00000023062.5	chr15	+	1031	4	FSM	ENSMUSG00000022427.5	ENSMUST00000023062.5	1569	4	20	518	20	202	multi-exon	FALSE	canonical	NA	NA	NA	NA	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGGTAGTATTTCACACC	NA	NA	NA	NA	NA	NA	NA	NA	79555081	79557083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_79555210_79555373_79555493_79556097_79556216_79556417
ENSMUST00000023064.9	chr15	+	893	5	FSM	ENSMUSG00000022428.9	ENSMUST00000023064.9	1147	5	0	254	0	-254	multi-exon	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCACCTCTTGACACTGG	NA	NA	NA	NA	NA	NA	NA	NA	79543399	79551607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_79543495_79545571_79545726_79549846_79549953_79550031_79550151_79551188
ENSMUST00000023072.7	chr15	+	2186	13	FSM	ENSMUSG00000022438.7	ENSMUST00000023072.7	3784	13	23	1575	23	-1575	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTTTGTGGGCTGTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	84116266	84198314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_84116388_84155431_84155522_84157699_84157771_84166962_84167066_84174587_84174729_84176982_84177099_84179757_84179817_84182166_84182187_84187608_84187671_84188035_84188105_84193053_84193156_84196903_84196977_84197155
ENSMUST00000023085.7	chr15	-	590	3	FSM	ENSMUSG00000022450.7	ENSMUST00000023085.7	590	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTCTCTCTTACTT	NA	NA	NA	NA	NA	NA	NA	NA	82238523	82234340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_82234573_82235179_82235296_82238281
ENSMUST00000023086.15	chr15	+	705	3	FSM	ENSMUSG00000022452.17	ENSMUST00000023086.15	705	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGCTTGGTTGCACTTT	NA	NA	NA	NA	NA	NA	NA	NA	82230154	82233291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_82230471_82232100_82232242_82233043
ENSMUST00000023086.15-0	chr15	+	583	3	FSM	ENSMUSG00000022452.17	ENSMUST00000023086.15	705	3	123	-1	123	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGCTTGGTTGCACTTTA	NA	NA	NA	NA	NA	NA	NA	NA	82230277	82233292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_82230471_82232100_82232242_82233043
ENSMUST00000023086.15-2	chr15	+	562	3	FSM	ENSMUSG00000022452.17	ENSMUST00000023086.15	705	3	60	83	60	-52	multi-exon	FALSE	canonical	NA	NA	NA	NA	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTGGAAATAACAAGCAAGC	NA	NA	NA	NA	NA	NA	NA	NA	82230214	82233208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_82230471_82232100_82232242_82233043
ENSMUST00000023104.7	chr15	-	2271	17	FSM	ENSMUSG00000022466.7	ENSMUST00000023104.7	2271	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGGTCGATATTTCATTT	NA	NA	NA	NA	NA	NA	NA	NA	97603706	97572977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_97573261_97576266_97576368_97576950_97577049_97578215_97578403_97579499_97579721_97581707_97581807_97581913_97581985_97584322_97584445_97585991_97586120_97589062_97589192_97591094_97591166_97591984_97592107_97594378_97594507_97596796_97596920_97598948_97599093_97601082_97601251_97603630
ENSMUST00000023112.12	chr15	-	1300	8	FSM	ENSMUSG00000022474.16	ENSMUST00000023112.12	1300	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	81845131	81835308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
ENSMUST00000023113.7	chr15	-	2542	6	FSM	ENSMUSG00000022476.9	ENSMUST00000023113.7	2542	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	959	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGCTGTCATCAAAAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	81810441	81799229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_81800867_81801400_81801603_81802468_81802533_81802875_81802963_81806609_81806707_81809986
ENSMUST00000023171.8	chr16	+	1101	4	FSM	ENSMUSG00000022528.9	ENSMUST00000023171.8	1468	4	0	367	0	-367	multi-exon	FALSE	canonical	NA	NA	NA	NA	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTCAGGCCACTGCTACC	NA	NA	NA	NA	NA	NA	NA	NA	29884157	29886247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_29884517_29884648_29884745_29884980_29885069_29885689
ENSMUST00000023210.8	chr15	+	1520	7	FSM	ENSMUSG00000022551.9	ENSMUST00000023210.8	1520	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCCATGGTGTGTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	76227722	76230460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76227893_76228501_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
ENSMUST00000023211.16	chr15	-	1734	9	FSM	ENSMUSG00000022552.17	ENSMUST00000023211.16	1734	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTTCTGTTCTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	76235311	76231239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234254_76234430_76234680
ENSMUST00000023213.8	chr15	+	1993	6	FSM	ENSMUSG00000022554.8	ENSMUST00000023213.8	1993	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGACTCTCCTGCAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	76253097	76255637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76253770_76253851_76253953_76254055_76254155_76254361_76254454_76254531_76254655_76254731
ENSMUST00000023221.13	chr15	+	2107	12	FSM	ENSMUSG00000022561.14	ENSMUST00000023221.13	2107	12	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	413	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGGCCCGCTGTCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	76215430	76219107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217300_76217376_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
ENSMUST00000023225.8	chr15	+	1343	7	FSM	ENSMUSG00000022564.8	ENSMUST00000023225.8	1725	7	55	327	55	-276	multi-exon	FALSE	canonical	NA	NA	NA	NA	294	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGACAGGGCTGCATTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	76131029	76133777	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76131101_76132050_76132378_76132458_76132569_76132648_76132850_76132971_76133101_76133177_76133322_76133416
ENSMUST00000023231.7	chr15	-	1335	11	FSM	ENSMUSG00000022570.8	ENSMUST00000023231.7	1335	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGACTCAGAAGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	75801602	75796531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
ENSMUST00000023248.13	chr15	-	819	3	FSM	ENSMUSG00000075602.11	ENSMUST00000023248.13	819	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAGTTCTCCATTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	74869483	74866726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_74867329_74868300_74868418_74869383
ENSMUST00000023259.15	chr15	-	2883	4	FSM	ENSMUSG00000022594.15	ENSMUST00000023259.15	4023	4	32	1108	32	-1108	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAGTGAGGCACTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	74624863	74620808	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_74623277_74623391_74623494_74623703_74623887_74624733
ENSMUST00000023289.13	chr15	-	1146	11	FSM	ENSMUSG00000022617.16	ENSMUST00000023289.13	1707	11	284	277	284	-277	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGTTCTACTTCCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	89313818	89310846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251_89313361_89313579
ENSMUST00000023356.8	chr16	+	1479	3	FSM	ENSMUSG00000022676.8	ENSMUST00000023356.8	2021	3	0	542	0	-542	multi-exon	FALSE	canonical	NA	NA	NA	NA	357	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCATCAGTGAATGACAGC	NA	NA	NA	NA	NA	NA	NA	NA	14523715	14526707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_14523917_14524574_14525124_14525978
ENSMUST00000023357.14	chr16	-	1465	5	FSM	ENSMUSG00000022677.16	ENSMUST00000023357.14	1465	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	14135239	14117107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_14118074_14122317_14122452_14128910_14128996_14131679_14131878_14135157
ENSMUST00000023357.14-0	chr16	-	1267	5	FSM	ENSMUSG00000022677.16	ENSMUST00000023357.14	1465	5	0	198	0	-198	multi-exon	FALSE	canonical	NA	NA	NA	NA	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGTCCAGCCCACAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	14135239	14117305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_14118074_14122317_14122452_14128910_14128996_14131679_14131878_14135157
ENSMUST00000023359.13	chr16	+	1751	9	FSM	ENSMUSG00000022678.17	ENSMUST00000023359.13	2287	9	29	507	17	-407	multi-exon	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGAACAGAACTTCATCC	NA	NA	NA	NA	NA	NA	NA	NA	13981167	14010285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
ENSMUST00000023365.13	chr16	+	2203	8	FSM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	129	671	-33	-661	multi-exon	TRUE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTCATAGTTTCTCACT	NA	NA	NA	NA	NA	NA	NA	NA	13489850	13520805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736_13516940_13519928
ENSMUST00000023387.14	chr16	-	2838	8	FSM	ENSMUSG00000022704.17	ENSMUST00000023387.14	2838	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCTGTGCATTGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	43710048	43681769	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43698319_43698397_43700661_43700718_43701355_43701577_43709929
ENSMUST00000023396.10	chr16	+	1157	9	FSM	ENSMUSG00000022711.17	ENSMUST00000023396.10	1842	9	82	603	0	-603	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCTGACCAACCTAGGTA	NA	NA	NA	NA	NA	NA	NA	NA	8455619	8474792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
ENSMUST00000023396.10-1	chr16	+	1172	9	FSM	ENSMUSG00000022711.17	ENSMUST00000023396.10	1842	9	0	670	0	-670	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCGCAGGAGGGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	8455537	8474725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
ENSMUST00000023405.16	chr16	-	1696	8	FSM	ENSMUSG00000022722.19	ENSMUST00000023405.16	1696	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTATTTTTATCCTTAACA	NA	NA	NA	NA	NA	NA	NA	NA	59459530	59433311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_59434208_59439157_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452824_59459292
ENSMUST00000023426.12	chr16	+	870	5	FSM	ENSMUSG00000022744.13	ENSMUST00000023426.12	2147	5	15	1262	0	-190	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTCATCTGGGCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	58548287	58553352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_58548448_58549800_58550111_58551664_58551776_58552943_58553082_58553201
ENSMUST00000023432.10	chr16	-	1286	10	FSM	ENSMUSG00000022751.10	ENSMUST00000023432.10	1286	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGATGTTTTTCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	56987695	56977027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880_56983970_56984560_56984682_56986460_56986580_56987643
ENSMUST00000023441.11	chr16	+	2345	12	FSM	ENSMUSG00000022758.15	ENSMUST00000023441.11	2345	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGTAGTAGTAGTCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	17379748	17389875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_17380048_17380584_17380736_17382819_17382892_17385301_17385378_17385569_17385664_17385736_17385818_17385896_17386039_17386124_17386235_17388221_17388316_17388396_17388463_17388602_17388681_17388793
ENSMUST00000023453.10	chr16	-	1108	3	FSM	ENSMUSG00000022769.10	ENSMUST00000023453.10	1108	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	403	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAGTGCATGAGATGTG	NA	NA	NA	NA	NA	NA	NA	NA	16950247	16948001	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_16948653_16949460_16949658_16949987
ENSMUST00000023474.4	chr16	+	823	3	FSM	ENSMUSG00000022787.11	ENSMUST00000023474.4	1394	3	-26	597	0	-588	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTGTTTGGATTACAAAT	NA	NA	NA	NA	NA	NA	NA	NA	32066044	32075304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_32066344_32070640_32071137_32075276
ENSMUST00000023482.13	chr16	+	1509	7	FSM	ENSMUSG00000022793.18	ENSMUST00000023482.13	2304	7	57	738	55	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACAGGATTCACTTCAGC	NA	NA	NA	NA	NA	NA	NA	NA	38562682	38588673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_38562731_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583554_38586276_38586382_38588259
ENSMUST00000023489.11	chr16	+	1214	9	FSM	ENSMUSG00000022800.15	ENSMUST00000023489.11	4312	9	70	3028	62	217	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTGGCCCATACAAAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	32698220	32726217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32721002_32721078_32722788_32722916_32725901
ENSMUST00000023514.4	chr16	-	569	3	FSM	ENSMUSG00000022820.5	ENSMUST00000023514.4	971	3	87	315	87	-315	multi-exon	FALSE	canonical	NA	NA	NA	NA	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTATTCATTGCATCTG	NA	NA	NA	NA	NA	NA	NA	NA	37474728	37467846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_37468082_37469375_37469523_37474541
ENSMUST00000023524.13	chr16	+	2031	8	FSM	ENSMUSG00000022827.15	ENSMUST00000023524.13	2031	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGTCATTTCTTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	37360246	37392747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356_37380472_37383977_37384129_37387681_37387754_37390749_37390789_37391391
ENSMUST00000023561.8	chr16	+	2422	17	FSM	ENSMUSG00000022855.10	ENSMUST00000023561.8	4499	17	51	2026	51	-2026	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGCTTGAAAATGCCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	21828284	21865993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_21828493_21830243_21830303_21832873_21833008_21834948_21835016_21837086_21837178_21842389_21842559_21845388_21845490_21846718_21846814_21847290_21847343_21850853_21850915_21855219_21855397_21857286_21857419_21859189_21859394_21860071_21860152_21861719_21861805_21862962_21863059_21865382
ENSMUST00000023562.9	chr16	-	1360	5	FSM	ENSMUSG00000022856.10	ENSMUST00000023562.9	1360	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGCAGGTTCTGAATGT	NA	NA	NA	NA	NA	NA	NA	NA	21766302	21753075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_21753796_21755730_21755870_21756682_21756845_21764750_21764905_21766117
ENSMUST00000023564.10	chr16	-	907	8	FSM	ENSMUSG00000022858.17	ENSMUST00000023564.10	1369	8	129	333	129	-333	multi-exon	TRUE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGTTTAAAAAGTGAACAG	NA	NA	NA	NA	NA	NA	NA	NA	22073868	22065530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733
ENSMUST00000023587.12	chr16	+	1057	8	FSM	ENSMUSG00000022871.14	ENSMUST00000023587.12	1544	8	79	408	0	-408	multi-exon	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTACCAGCTCCCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	22739065	22758094	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_22739246_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUST00000023598.15	chr16	-	1228	11	FSM	ENSMUSG00000022881.16	ENSMUST00000023598.15	1228	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	381	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATATACAATTTTATTTA	NA	NA	NA	NA	NA	NA	NA	NA	22946487	22932692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
ENSMUST00000023608.14	chr16	-	809	5	FSM	ENSMUSG00000022890.14	ENSMUST00000023608.14	809	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	NA	NA	NA	NA	NA	NA	NA	84632513	84624758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_84624884_84625312_84625438_84628216_84628396_84631696_84631872_84632308
ENSMUST00000023612.17	chr16	+	2346	10	FSM	ENSMUSG00000022895.17	ENSMUST00000023612.17	3890	10	425	1119	425	-961	multi-exon	FALSE	canonical	NA	NA	NA	NA	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTATTTGAGGGTCCATA	NA	NA	NA	NA	NA	NA	NA	NA	95503366	95520976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_95503512_95507287_95507360_95510815_95510928_95512699_95512820_95513129_95513331_95515380_95515465_95516010_95516230_95517077_95517342_95518891_95519011_95519966
ENSMUST00000023666.11	chr16	+	1922	14	FSM	ENSMUSG00000022945.13	ENSMUST00000023666.11	1922	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGCTGACTTCGCT	NA	NA	NA	NA	NA	NA	NA	NA	93680788	93703003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_93680864_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
ENSMUST00000023669.14	chr16	-	1816	12	FSM	ENSMUSG00000022948.17	ENSMUST00000023669.14	1816	12	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	NA	NA	NA	NA	NA	NA	NA	93400691	93380344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024_93400099_93400453
ENSMUST00000023672.10	chr16	-	2190	4	FSM	ENSMUSG00000022951.17	ENSMUST00000023672.10	2190	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACGTTGTTGGTCGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	92196965	92188842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92196783
ENSMUST00000023691.12	chr16	+	1850	7	FSM	ENSMUSG00000022969.14	ENSMUST00000023691.12	1850	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	295	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGTTTGTTCTGTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	91203122	91222722	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_91203261_91204505_91204630_91208770_91208929_91211500_91211668_91216219_91216368_91218620_91218779_91221765
ENSMUST00000023693.14	chr16	+	1514	9	FSM	ENSMUSG00000022971.19	ENSMUST00000023693.14	3047	9	58	1475	-9	-1252	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCCATGGATGAGCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	91169728	91201002	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644_91190802_91196105_91196234_91200597
ENSMUST00000023727.17	chr15	-	2311	10	FSM	ENSMUSG00000022992.18	ENSMUST00000023727.17	2311	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAGTGTAAAGTGATCT	NA	NA	NA	NA	NA	NA	NA	NA	98432125	98416701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_98417429_98418198_98418307_98422441_98422594_98424455_98424553_98426743_98426907_98427166_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
ENSMUST00000023749.15	chr15	+	939	10	FSM	ENSMUSG00000023010.16	ENSMUST00000023749.15	2452	10	0	1513	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCACCCCCCCACCCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	99290762	99306417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ENSMUST00000023749.15-1	chr15	+	915	10	FSM	ENSMUSG00000023010.16	ENSMUST00000023749.15	2452	10	122	1415	18	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGAAATTTTTTGATC	NA	NA	NA	NA	NA	NA	NA	NA	99290884	99306515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ENSMUST00000023761.4	chr15	+	1161	2	FSM	ENSMUSG00000023020.4	ENSMUST00000023761.4	2090	2	30	899	30	-899	multi-exon	FALSE	canonical	NA	NA	NA	NA	313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAGATTTAGTTATT	NA	NA	NA	NA	NA	NA	NA	NA	99623557	99626514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_99623730_99625525
ENSMUST00000023762.13	chr15	-	2096	10	FSM	ENSMUSG00000023021.16	ENSMUST00000023762.13	2096	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	NA	NA	NA	NA	NA	NA	NA	99670482	99633472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_99634318_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
ENSMUST00000023769.11	chr15	+	1566	7	FSM	ENSMUSG00000023027.14	ENSMUST00000023769.11	2365	7	52	747	52	-747	multi-exon	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTTTGGAGATCTCCTAA	NA	NA	NA	NA	NA	NA	NA	NA	100125751	100158378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695
ENSMUST00000023775.9	chr15	-	1108	8	FSM	ENSMUSG00000023031.9	ENSMUST00000023775.9	1108	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCTTGCATTTATAAT	NA	NA	NA	NA	NA	NA	NA	NA	100585802	100572301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_100572599_100573204_100573355_100579023_100579170_100580767_100580905_100582460_100582587_100583014_100583116_100585005_100585089_100585734
ENSMUST00000023849.15	chr3	+	1488	3	FSM	ENSMUSG00000023087.16	ENSMUST00000023849.15	3059	3	23	1548	0	-1528	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCCCGCACTGGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	51131890	51157517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_51132709_51155225_51155496_51157117
ENSMUST00000023851.9	chr6	-	875	5	FSM	ENSMUSG00000023089.13	ENSMUST00000023851.9	875	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	NA	NA	NA	NA	NA	NA	NA	NA	24528012	24518664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_24518824_24519190_24519257_24522657_24522775_24527271_24527317_24527524
ENSMUST00000023856.9	chr2	+	1196	5	FSM	ENSMUSG00000023094.15	ENSMUST00000023856.9	1196	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTGTCTCAGTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	19376446	19399787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_19376591_19382972_19383074_19388051_19388129_19398018_19398167_19399061
ENSMUST00000023869.15	chr5	+	691	8	FSM	ENSMUSG00000023106.16	ENSMUST00000023869.15	2339	8	107	1541	107	-1541	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAAGTCATGTGTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	124045344	124065357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_124045430_124046162_124046278_124053253_124053274_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ENSMUST00000023873.12	chr14	-	2691	17	FSM	ENSMUSG00000023110.13	ENSMUST00000023873.12	2691	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCCTGCTTCTTTCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	54754982	54744643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
ENSMUST00000023913.11	chr16	+	1285	5	FSM	ENSMUSG00000023147.18	ENSMUST00000023913.11	2495	5	11	1199	0	696	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTTTTTTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	95946617	95957853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280_95955396_95957078
ENSMUST00000024004.9	chr8	+	1058	6	FSM	ENSMUSG00000023235.15	ENSMUST00000024004.9	1058	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGTCTAGTGTGCAGTA	NA	NA	NA	NA	NA	NA	NA	NA	4399587	4410020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_4399656_4399771_4399895_4403882_4404001_4404090_4404204_4407592_4407690_4409481
ENSMUST00000024042.5	chr15	+	1138	10	FSM	ENSMUSG00000023272.5	ENSMUST00000024042.5	1366	10	0	228	0	-228	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAAACTCACCCTTTAAGT	NA	NA	NA	NA	NA	NA	NA	NA	88703848	88710658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_88704038_88704133_88704217_88704731_88704843_88705337_88705430_88706161_88706339_88707269_88707366_88707944_88708029_88708850_88708947_88709352_88709494_88710589
ENSMUST00000024047.12	chr9	+	1596	9	FSM	ENSMUSG00000023277.14	ENSMUST00000024047.12	1596	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGAGCCTGGGTGCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	106080306	106092588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_106080484_106084087_106084166_106088917_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
ENSMUST00000024056.10	chr4	+	3483	8	FSM	ENSMUSG00000023286.17	ENSMUST00000024056.10	3483	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCTGCCTTGTTGACTT	NA	NA	NA	NA	NA	NA	NA	NA	156028306	156044061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_156028608_156030711_156030875_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ENSMUST00000024270.14	chr6	+	1976	6	FSM	ENSMUSG00000023505.14	ENSMUST00000024270.14	1976	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTTGTCTTGTCTTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	124806650	124810664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_124807237_124807465_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
ENSMUST00000024270.14-0	chr6	+	1635	6	FSM	ENSMUSG00000023505.14	ENSMUST00000024270.14	1976	6	0	341	0	219	multi-exon	FALSE	canonical	NA	NA	NA	NA	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTCTCTCCTGCCACTT	NA	NA	NA	NA	NA	NA	NA	NA	124806650	124810323	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_124807237_124807465_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
ENSMUST00000024470.13	chr5	+	1596	7	FSM	ENSMUSG00000023707.14	ENSMUST00000024470.13	1596	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTTTGCTATTATTTAA	NA	NA	NA	NA	NA	NA	NA	NA	124250359	124253546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252256_124252450_124252709_124252777
ENSMUST00000024486.14	chr11	+	760	5	FSM	ENSMUSG00000023723.18	ENSMUST00000024486.14	1332	5	36	536	0	301	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTTTGAAACTGTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	88095249	88101797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_88095312_88096014_88096186_88100678_88100757_88100929_88101057_88101475
ENSMUST00000024518.11	chr15	-	1261	8	FSM	ENSMUSG00000023755.11	ENSMUST00000024518.11	1261	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	98779361	98775658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
ENSMUST00000024572.10	chr17	-	1614	8	FSM	ENSMUSG00000023806.11	ENSMUST00000024572.10	1614	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATCGTTCAAGGGCCATG	NA	NA	NA	NA	NA	NA	NA	NA	7215755	7172114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_7172520_7172831_7172919_7175430_7175594_7177506_7177711_7178676_7178823_7181355_7181498_7209067_7209156_7215376
ENSMUST00000024594.9	chr17	+	1362	9	FSM	ENSMUSG00000023827.9	ENSMUST00000024594.9	1915	9	45	508	37	-508	multi-exon	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGCAGGGCTCAGTGATG	NA	NA	NA	NA	NA	NA	NA	NA	12338215	12438024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
ENSMUST00000024697.5	chr17	+	946	3	FSM	ENSMUSG00000023904.11	ENSMUST00000024697.5	946	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	23892581	23894201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_23893043_23893508_23893650_23893857
ENSMUST00000024698.10	chr17	-	371	4	FSM	ENSMUSG00000023905.16	ENSMUST00000024698.10	984	4	48	565	0	-187	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGCACTGATCCAGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	23896394	23894983	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_23895021_23895112_23895248_23895492_23895598_23896300
ENSMUST00000024704.10	chr17	-	694	3	FSM	ENSMUSG00000023911.13	ENSMUST00000024704.10	694	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTAGTTTTTGTTGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	24005055	23995889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_23996074_23998601_23999031_24004974
ENSMUST00000024706.12	chr17	+	1388	12	FSM	ENSMUSG00000023913.18	ENSMUST00000024706.12	2097	12	446	263	446	-263	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGCTCAGCAACACTCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	43879605	43922829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_43879678_43899454_43899595_43905179_43905302_43905669_43905815_43907793_43907888_43909964_43910034_43911385_43911510_43913718_43913833_43915447_43915540_43918125_43918297_43922159_43922309_43922733
ENSMUST00000024734.8	chr17	+	645	3	FSM	ENSMUSG00000023939.8	ENSMUST00000024734.8	645	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGAGCTGTGATCG	NA	NA	NA	NA	NA	NA	NA	NA	45997247	46009421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_45997354_46006407_46006499_46008973
ENSMUST00000024739.14	chr17	-	2520	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTGCTCTCCTTGTAAC	NA	NA	NA	NA	NA	NA	NA	NA	45884197	45878700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
ENSMUST00000024763.10	chr17	+	507	6	FSM	ENSMUSG00000023967.10	ENSMUST00000024763.10	884	6	10	367	0	-367	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATAAAAAAGGCCACCGTT	NA	NA	NA	NA	NA	NA	NA	NA	46421921	46439469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436340_46436568_46436639_46439430
ENSMUST00000024766.7	chr17	-	1195	7	FSM	ENSMUSG00000023971.10	ENSMUST00000024766.7	1195	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	46985181	46978383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
ENSMUST00000024778.3	chr17	+	1425	4	FSM	ENSMUSG00000092558.4	ENSMUST00000024778.3	2054	4	39	590	39	510	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGACACATGTTCCTGACA	NA	NA	NA	NA	NA	NA	NA	NA	47922545	47934753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_47922618_47923887_47924043_47929733_47929988_47933809
ENSMUST00000024802.10	chr17	-	502	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	167	793	167	-793	multi-exon	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGTGAATCGAGTGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	29482993	29470569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
ENSMUST00000024846.13	chr17	-	980	4	FSM	ENSMUSG00000024048.16	ENSMUST00000024846.13	980	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGTTGTTTAGCGTTA	NA	NA	NA	NA	NA	NA	NA	NA	71305007	71301288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71304879
ENSMUST00000024849.11	chr17	-	3906	8	FSM	ENSMUSG00000024053.12	ENSMUST00000024849.11	3906	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCCTTTTCTGTATTTG	NA	NA	NA	NA	NA	NA	NA	NA	71617956	71559167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_71560089_71562113_71562243_71562974_71563008_71563318_71563685_71580368_71582283_71587668_71587845_71617143_71617267_71617712
ENSMUST00000024857.14	chr17	+	1025	3	FSM	ENSMUSG00000024063.14	ENSMUST00000024857.14	3069	3	0	2044	0	-2044	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTTTAAAGAGAACTACAG	NA	NA	NA	NA	NA	NA	NA	NA	73225299	73246898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_73225574_73228182_73228286_73246250
ENSMUST00000024873.7	chr17	+	2133	6	FSM	ENSMUSG00000024072.10	ENSMUST00000024873.7	2133	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	568	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAACCAAACAGGTA	NA	NA	NA	NA	NA	NA	NA	NA	74796487	74807272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_74796790_74799340_74799501_74800922_74801095_74803584_74803663_74805303_74805418_74805965
ENSMUST00000024909.15	chr17	-	927	9	FSM	ENSMUSG00000024099.16	ENSMUST00000024909.15	927	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAAGCTTTATTCGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	66408490	66386435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66407972_66408070_66408409
ENSMUST00000024946.7	chr17	+	1086	7	FSM	ENSMUSG00000024132.7	ENSMUST00000024946.7	1086	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTAGCTCTTGTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	24645656	24658294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_24645717_24645826_24645914_24652115_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
ENSMUST00000024956.15	chr17	+	2507	5	FSM	ENSMUSG00000024143.16	ENSMUST00000024956.15	4151	5	0	1644	0	997	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGCAACAGACAGTAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	87270509	87305853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_87271176_87271727_87271787_87301986_87302152_87302431_87302528_87304332
ENSMUST00000024957.7	chr17	-	988	6	FSM	ENSMUSG00000024145.7	ENSMUST00000024957.7	988	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGGCTTCAGATGCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	87332834	87304683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_87304996_87316230_87316340_87327828_87327946_87329286_87329379_87331092_87331342_87332725
ENSMUST00000024959.10-1	chr17	+	738	5	FSM	ENSMUSG00000024146.10	ENSMUST00000024959.10	1184	5	0	446	0	-446	multi-exon	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCATGCATTTATTTATAG	NA	NA	NA	NA	NA	NA	NA	NA	87332977	87342792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_87333104_87335126_87335193_87338435_87338491_87341683_87341788_87342405
ENSMUST00000024963.11	chr17	-	2038	4	FSM	ENSMUSG00000024150.13	ENSMUST00000024963.11	2038	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCCGGCTGGATTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	87573363	87561870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87573262
ENSMUST00000024978.7	chr17	+	505	5	FSM	ENSMUSG00000073435.11	ENSMUST00000024978.7	715	5	23	187	17	4	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCAGTCAGCATTACCA	NA	NA	NA	NA	NA	NA	NA	NA	25115496	25116309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_25115534_25115601_25115733_25115825_25115928_25116001_25116115_25116187
ENSMUST00000025003.10	chr17	-	3000	3	FSM	ENSMUSG00000024176.11	ENSMUST00000025003.10	3000	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATGTTTTGAGTATTACT	NA	NA	NA	NA	NA	NA	NA	NA	25789660	25784865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_25787056_25787801_25788035_25789083
ENSMUST00000025007.7	chr17	-	1006	5	FSM	ENSMUSG00000024177.10	ENSMUST00000025007.7	1006	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	26314576	26310707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26311127_26312590_26312704_26312832_26312935_26313110_26313245_26314338
ENSMUST00000025014.10	chr17	+	1068	5	FSM	ENSMUSG00000024181.10	ENSMUST00000025014.10	1068	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	26342473	26345587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345244
ENSMUST00000025014.10-1	chr17	+	845	5	FSM	ENSMUSG00000024181.10	ENSMUST00000025014.10	1068	5	223	0	179	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	26342696	26345587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345244
ENSMUST00000025019.9	chr17	-	1032	6	FSM	ENSMUSG00000073433.12	ENSMUST00000025019.9	1032	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTGTGCTGCTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	26420324	26418156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26418504_26418586_26418651_26418725_26418803_26418988_26419073_26419164_26419345_26420044
ENSMUST00000025027.10	chr17	-	741	7	FSM	ENSMUSG00000024194.17	ENSMUST00000025027.10	741	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	NA	NA	NA	NA	NA	NA	NA	NA	27158543	27156945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158290_27158343_27158424
ENSMUST00000025040.6	chr6	-	390	1	FSM	ENSMUSG00000091845.2	ENSMUST00000025040.6	390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTGTATTTTTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	108117470	108117080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_108117100_108117500
ENSMUST00000025045.15	chr17	-	500	4	FSM	ENSMUSG00000024208.17	ENSMUST00000025045.15	500	4	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTGGAACTCATTCAT	NA	NA	NA	NA	NA	NA	NA	NA	27352890	27341636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_27341815_27344120_27344191_27344857_27344933_27352713
ENSMUST00000025050.13	chr17	-	2223	5	FSM	ENSMUSG00000024213.15	ENSMUST00000025050.13	2223	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTTTGTTCCATGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	27842469	27798355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_27799929_27800981_27801067_27802185_27802231_27815697_27815809_27842060
ENSMUST00000025077.7	chr18	+	1546	9	FSM	ENSMUSG00000024234.8	ENSMUST00000025077.7	2651	9	12	1093	12	-1093	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATTTTGGAACAGGAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	4375603	4396237	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ENSMUST00000025101.10	chr17	+	1354	13	FSM	ENSMUSG00000024253.10	ENSMUST00000025101.10	1354	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATCTAAGTATAAATTTT	NA	NA	NA	NA	NA	NA	NA	NA	84933923	84963016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_84934005_84935712_84935831_84939063_84939099_84940946_84941017_84943659_84943749_84950299_84950487_84951532_84951602_84952146_84952225_84954672_84954750_84955073_84955145_84956643_84956742_84957136_84957230_84962728
ENSMUST00000025137.9	chr18	+	2163	21	FSM	ENSMUSG00000024287.9	ENSMUST00000025137.9	4134	21	274	1697	274	-1697	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGGAAAACAAAGTAAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	9958179	9993792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986356_9986552_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320
ENSMUST00000025163.14	chr17	-	807	4	FSM	ENSMUSG00000024309.16	ENSMUST00000025163.14	807	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGATTCTGTTTTGCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	34159317	34157794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997
ENSMUST00000025186.16	chr17	-	2320	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1665	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTTGTCTTTATGTG	NA	NA	NA	NA	NA	NA	NA	NA	34250594	34247242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
ENSMUST00000025202.8	chr7	+	1118	2	FSM	ENSMUSG00000058975.8	ENSMUST00000025202.8	7760	2	1151	5491	0	-5491	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACTACGCCGAGAGGATAG	NA	NA	NA	NA	NA	NA	NA	NA	46047071	46077287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_46047672_46076769
ENSMUST00000025204.7	chr18	-	1109	4	FSM	ENSMUSG00000024346.7	ENSMUST00000025204.7	1109	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGTTGCCTTGCATTT	NA	NA	NA	NA	NA	NA	NA	NA	36587577	36536728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_36537514_36565358_36565444_36584132_36584300_36587505
ENSMUST00000025212.8	chr18	-	3026	15	FSM	ENSMUSG00000024354.14	ENSMUST00000025212.8	3026	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTTTCTGTGTTATGGA	NA	NA	NA	NA	NA	NA	NA	NA	35760297	35747656	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_35748741_35752440_35752706_35754819_35754916_35755339_35755484_35755564_35755695_35755911_35756018_35756503_35756652_35757123_35757281_35757480_35757602_35757734_35757917_35758052_35758121_35758240_35758330_35758860_35759019_35759411_35759547_35760154
ENSMUST00000025246.13	chr17	-	961	7	FSM	ENSMUSG00000024387.14	ENSMUST00000025246.13	961	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTCTCCTACTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	35340262	35335173	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340097
ENSMUST00000025254.9	chr18	+	1474	10	FSM	ENSMUSG00000024395.10	ENSMUST00000025254.9	1870	10	21	375	21	-375	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACCCGCAGATCCCAACC	NA	NA	NA	NA	NA	NA	NA	NA	32064398	32091297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_32064604_32074792_32074953_32077191_32077259_32077488_32077610_32087488_32087639_32088310_32088462_32089310_32089404_32090005_32090055_32090290_32090367_32090895
ENSMUST00000025266.6	chr17	-	1383	4	FSM	ENSMUSG00000024402.6	ENSMUST00000025266.6	1383	4	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGTCTGCTTGTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	35424327	35422140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_35423126_35423350_35423451_35423533_35423639_35424134
ENSMUST00000025278.8	chr11	+	756	4	FSM	ENSMUSG00000024414.14	ENSMUST00000025278.8	756	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAAAGGGACAGGACAG	NA	NA	NA	NA	NA	NA	NA	NA	94544592	94550915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_94544668_94547312_94547445_94547808_94547877_94550434
ENSMUST00000025278.8-0	chr11	+	576	4	FSM	ENSMUSG00000024414.14	ENSMUST00000025278.8	756	4	9	171	9	-171	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGAGATGGCTCAGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	94544601	94550744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_94544668_94547312_94547445_94547808_94547877_94550434
ENSMUST00000025290.7	chr18	+	1296	11	FSM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	349	2118	349	968	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTAAATGTCAATTTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	13105328	13123889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
ENSMUST00000025293.5	chr18	+	1392	8	FSM	ENSMUSG00000024425.5	ENSMUST00000025293.5	1392	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGTTCTCAATTAGT	NA	NA	NA	NA	NA	NA	NA	NA	38552021	38597892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597313
ENSMUST00000025300.13	chr18	-	4989	9	FSM	ENSMUSG00000024431.16	ENSMUST00000025300.13	4989	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGGAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	39622899	39545039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561669_39561834_39619050_39620299_39622797
ENSMUST00000025305.16	chr17	-	1079	7	FSM	ENSMUSG00000024436.17	ENSMUST00000025305.16	1079	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTCCCTTTGGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	36227281	36221270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227183
ENSMUST00000025357.9	chr18	+	1520	6	FSM	ENSMUSG00000024480.10	ENSMUST00000025357.9	1520	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1508	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTTTGCCTCCCATTC	NA	NA	NA	NA	NA	NA	NA	NA	46874942	46923893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_46875149_46887437_46887530_46891069_46891182_46912254_46912327_46913727_46913836_46922963
ENSMUST00000025390.4	chr18	-	1225	3	FSM	ENSMUSG00000024512.5	ENSMUST00000025390.4	1225	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTGAGTCTTATATTTG	NA	NA	NA	NA	NA	NA	NA	NA	70377653	70373499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_70374387_70375075_70375157_70377396
ENSMUST00000025394.14	chr18	+	860	6	FSM	ENSMUSG00000024516.14	ENSMUST00000025394.14	860	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	594	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGAGTCTGCCCAGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	65933585	65950755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_65933783_65942515_65942626_65945735_65945886_65947908_65948029_65949891_65949950_65950530
ENSMUST00000025399.9	chr18	+	1304	3	FSM	ENSMUSG00000024521.9	ENSMUST00000025399.9	2727	3	60	1363	0	117	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGCCATCCTGGAACT	NA	NA	NA	NA	NA	NA	NA	NA	66591663	66597268	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_66591884_66593913_66594070_66596340
ENSMUST00000025406.9	chr18	+	1951	8	FSM	ENSMUSG00000024528.9	ENSMUST00000025406.9	2656	8	42	663	42	-663	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAGTTACTTGTGACTTA	NA	NA	NA	NA	NA	NA	NA	NA	52598806	52624340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515
ENSMUST00000025419.9	chr18	-	1403	5	FSM	ENSMUSG00000024538.9	ENSMUST00000025419.9	1403	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2098	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTGCAAGACTTTG	NA	NA	NA	NA	NA	NA	NA	NA	53551187	53539403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_53540138_53542196_53542382_53544058_53544153_53544577_53544692_53550911
ENSMUST00000025420.14	chr18	-	1568	10	FSM	ENSMUSG00000024539.18	ENSMUST00000025420.14	1568	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	271	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTTGGTTTGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	67857658	67798581	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_67798945_67805736_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
ENSMUST00000025463.14	chr18	+	1650	4	FSM	ENSMUSG00000024571.16	ENSMUST00000025463.14	1650	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAAAAGGAGTACACGTT	NA	NA	NA	NA	NA	NA	NA	NA	80250081	80255938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_80250162_80250368_80250559_80253276_80253346_80254627
ENSMUST00000025474.14	chr18	+	3567	12	FSM	ENSMUSG00000024581.14	ENSMUST00000025474.14	3567	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTCAGTTTTATTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	63110901	63132521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
ENSMUST00000025490.10	chr18	+	2643	9	FSM	ENSMUSG00000024594.10	ENSMUST00000025490.10	5030	9	5	2382	5	-2382	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCCCACCAAGTGCAATT	NA	NA	NA	NA	NA	NA	NA	NA	57487817	57523646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_57487964_57495504_57495622_57496147_57496538_57498260_57498422_57504438_57504542_57507598_57507763_57514699_57514804_57517245_57517349_57522291
ENSMUST00000025503.10	chr18	+	1828	5	FSM	ENSMUSG00000024601.10	ENSMUST00000025503.10	3377	5	14	1535	0	649	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAACCAATCAATAAACTTA	NA	NA	NA	NA	NA	NA	NA	NA	58792551	58811905	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_58792870_58804279_58804400_58804519_58804724_58806321_58806439_58810836
ENSMUST00000025506.7	chr18	+	1675	11	FSM	ENSMUSG00000024604.8	ENSMUST00000025506.7	2210	11	32	503	32	-503	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGGTTTAAAAAAAGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	60693839	60705379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_60693952_60694322_60694377_60696837_60696868_60697434_60697568_60698689_60698791_60699424_60699598_60700442_60700644_60702428_60702594_60703852_60703942_60704071_60704204_60704894
ENSMUST00000025511.11	chr18	+	597	5	FSM	ENSMUSG00000024608.12	ENSMUST00000025511.11	597	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTGGTGTTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	60907667	60911618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502
ENSMUST00000025541.6	chr19	+	1746	7	FSM	ENSMUSG00000024639.6	ENSMUST00000025541.6	5644	7	0	3898	0	178	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGGAAACAGGATGCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	16110194	16360929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_16110826_16196951_16197137_16293380_16293536_16309440_16309570_16312344_16312475_16355520_16355675_16360567
ENSMUST00000025561.8	chr19	-	1674	13	FSM	ENSMUSG00000024659.16	ENSMUST00000025561.8	1674	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGTCATTGTCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	20368308	20350791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_20351135_20352588_20352712_20354015_20354075_20354970_20355067_20355759_20355854_20357012_20357070_20357703_20357784_20359413_20359505_20360225_20360340_20361120_20361216_20361838_20361948_20362056_20362137_20367975
ENSMUST00000025563.8	chr19	+	929	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTGTGATTGAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	9960009	9962462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
ENSMUST00000025567.9	chr19	-	3150	12	FSM	ENSMUSG00000024665.9	ENSMUST00000025567.9	3150	12	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCCTGTAGTTCAGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	10079110	10040128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_10041679_10042049_10042176_10042965_10043046_10043615_10043713_10043878_10043977_10047635_10047713_10047927_10047989_10059928_10060055_10066065_10066168_10066271_10066470_10069104_10069216_10078586
ENSMUST00000025568.3	chr19	-	1590	5	FSM	ENSMUSG00000024666.7	ENSMUST00000025568.3	1590	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGTGTCTTCATGGT	NA	NA	NA	NA	NA	NA	NA	NA	10554726	10547841	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554447
ENSMUST00000025595.5	chr19	+	3267	4	FSM	ENSMUSG00000024691.14	ENSMUST00000025595.5	3267	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTTTTCTTTAGTTATT	NA	NA	NA	NA	NA	NA	NA	NA	12550886	12567126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_12550945_12554453_12554535_12561286_12561487_12564198
ENSMUST00000025639.7	chr19	-	2198	4	FSM	ENSMUSG00000024732.8	ENSMUST00000025639.7	3003	4	15	790	15	-790	multi-exon	FALSE	canonical	NA	NA	NA	NA	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGCGTGGTTCAGGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	10926615	10919634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641
ENSMUST00000025651.6	chr19	-	2341	2	FSM	ENSMUSG00000024742.16	ENSMUST00000025651.6	2341	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	NA	NA	NA	NA	NA	NA	NA	NA	10181432	10176501	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_10178462_10181051
ENSMUST00000025669.4	chr19	+	504	1	FSM	ENSMUSG00000024761.4	ENSMUST00000025669.4	504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	177	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACCCTGGAGACACTCCA	NA	NA	NA	NA	NA	NA	NA	NA	7645651	7646155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_7645700_7646200
ENSMUST00000025675.11	chr19	-	754	8	FSM	ENSMUSG00000024764.11	ENSMUST00000025675.11	3231	8	149	2328	22	-2288	multi-exon	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGTCAGCACTCCCACAC	NA	NA	NA	NA	NA	NA	NA	NA	7218399	7205365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_7205457_7205716_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7211522_7212427_7212524_7218302
ENSMUST00000025679.11	chr19	-	1713	7	FSM	ENSMUSG00000024767.12	ENSMUST00000025679.11	1713	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTGGCCCATGCATC	NA	NA	NA	NA	NA	NA	NA	NA	7183681	7175566	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
ENSMUST00000025704.3	chr19	+	2024	6	FSM	ENSMUSG00000024791.11	ENSMUST00000025704.3	2024	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	6135012	6141807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_6135239_6135427_6135520_6136431_6136498_6136581_6136618_6140080_6140555_6140677
ENSMUST00000025706.10	chr4	+	1661	10	FSM	ENSMUSG00000024793.15	ENSMUST00000025706.10	1661	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTCAGTGGGAGTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	152200390	152204576	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_152200572_152201041_152201181_152201387_152201523_152201834_152202000_152202096_152202152_152202703_152202760_152202857_152202957_152203146_152203185_152203616_152203801_152203967
ENSMUST00000025707.9	chr19	-	1287	8	FSM	ENSMUSG00000024792.10	ENSMUST00000025707.9	1287	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	6134973	6130791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134893
ENSMUST00000025713.12	chr19	-	1471	10	FSM	ENSMUSG00000024799.17	ENSMUST00000025713.12	1471	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTTCTTCTATCC	NA	NA	NA	NA	NA	NA	NA	NA	6117872	6112850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
ENSMUST00000025714.9	chr19	+	1145	11	FSM	ENSMUSG00000024800.9	ENSMUST00000025714.9	1145	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTTTTAAATTTTACTA	NA	NA	NA	NA	NA	NA	NA	NA	36061130	36082177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735
ENSMUST00000025718.10	chr19	-	1818	9	FSM	ENSMUSG00000024803.10	ENSMUST00000025718.10	1818	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGTGTTCTAAGGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	36097310	36089365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_36090218_36092388_36092476_36092598_36092698_36092872_36092972_36094170_36094270_36095233_36095342_36095625_36095764_36096618_36096799_36097154
ENSMUST00000025740.8	chr19	-	2081	11	FSM	ENSMUSG00000024824.8	ENSMUST00000025740.8	2081	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTGTGTTCCCCGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	4251635	4245194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
ENSMUST00000025743.7	chr19	+	802	7	FSM	ENSMUSG00000024829.13	ENSMUST00000025743.7	802	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGACTTGCTGTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	3333059	3341201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_3333172_3334759_3334818_3335309_3335396_3336874_3337039_3337702_3337756_3338983_3339088_3340976
ENSMUST00000025745.10	chr19	+	868	7	FSM	ENSMUSG00000024829.13	ENSMUST00000025745.10	1138	7	0	270	0	-270	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCAGAGACTCCTCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	3332900	3342567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_3333172_3334759_3334818_3335309_3335396_3336874_3337039_3337702_3337756_3338983_3339088_3342435
ENSMUST00000025751.11	chr19	-	4280	15	FSM	ENSMUSG00000024831.15	ENSMUST00000025751.11	5569	15	89	1200	51	648	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTGTTTGAATGGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	3332928	3310275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_3311636_3311974_3312145_3314810_3315666_3316335_3316460_3317241_3317337_3318297_3318417_3318659_3318843_3321525_3321701_3322887_3323036_3324355_3324557_3326755_3326920_3329532_3329631_3329806_3329997_3331418_3331589_3332700
ENSMUST00000025759.9	chr19	+	793	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	204	1559	204	-1559	multi-exon	TRUE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGGTCAAGTTCTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	5416972	5419995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
ENSMUST00000025762.16	chr19	-	1261	3	FSM	ENSMUSG00000024844.16	ENSMUST00000025762.16	1261	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3415	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGTTCTGTGTCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	5417196	5414665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5415187_5415845_5415985_5416595
ENSMUST00000025767.14	chr19	-	1261	6	FSM	ENSMUSG00000024847.16	ENSMUST00000025767.14	1261	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTTTGCAGAACTAATC	NA	NA	NA	NA	NA	NA	NA	NA	4171575	4164463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335
ENSMUST00000025779.11	chr19	+	1080	4	FSM	ENSMUSG00000024856.11	ENSMUST00000025779.11	1080	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTTTCTGTGTGTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	4147181	4149017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_4147508_4147816_4147918_4148004_4148138_4148497
ENSMUST00000025802.10	chr19	+	787	4	FSM	ENSMUSG00000110949.2	ENSMUST00000025802.10	787	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGGCATCTTCCGTGT	NA	NA	NA	NA	NA	NA	NA	NA	4050579	4052103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_4050848_4051195_4051329_4051627_4051706_4051795
ENSMUST00000025811.6	chr19	+	980	8	FSM	ENSMUSG00000024875.6	ENSMUST00000025811.6	1488	8	15	493	0	-117	multi-exon	FALSE	canonical	NA	NA	NA	NA	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCAGCTGCCTTCCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	5138587	5142416	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5141568_5141725_5142156_5142251_5142329
ENSMUST00000025818.8	chr19	+	4184	10	FSM	ENSMUSG00000024883.9	ENSMUST00000025818.8	4184	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAGCTTGATAACTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	5100860	5107099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5100970_5101101_5101283_5101381_5101497_5101585_5101659_5101768_5101861_5102003_5102745_5102997_5103304_5103626_5103759_5103883_5104036_5104816
ENSMUST00000025823.6	chr19	-	1425	8	FSM	ENSMUSG00000024889.6	ENSMUST00000025823.6	1425	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGTCTTGGAACCTTG	NA	NA	NA	NA	NA	NA	NA	NA	4675668	4672622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675125_4675220_4675324_4675460
ENSMUST00000025827.10	chr19	+	2613	5	FSM	ENSMUSG00000024896.10	ENSMUST00000025827.10	2613	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1016	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCTGCACTCATTGAAAT	NA	NA	NA	NA	NA	NA	NA	NA	32463168	32492764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_32463960_32468737_32468936_32471270_32471369_32475783_32475918_32491372
ENSMUST00000025836.6	chr19	+	2418	5	FSM	ENSMUSG00000024902.6	ENSMUST00000025836.6	3045	5	216	411	15	-411	multi-exon	FALSE	canonical	NA	NA	NA	NA	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTCCAGTAGACACCT	NA	NA	NA	NA	NA	NA	NA	NA	5012390	5016616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533_5013694_5014701
ENSMUST00000025850.7	chr19	+	1005	4	FSM	ENSMUSG00000024912.7	ENSMUST00000025850.7	1864	4	374	485	52	-71	multi-exon	FALSE	canonical	NA	NA	NA	NA	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAGGGGATCCCCAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	5497948	5505489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5498084_5500187_5500380_5504440_5504549_5504919
ENSMUST00000025850.7-1	chr19	+	996	4	FSM	ENSMUSG00000024912.7	ENSMUST00000025850.7	1864	4	0	868	0	-454	multi-exon	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCCCAGTGCCTTGCATC	NA	NA	NA	NA	NA	NA	NA	NA	5497574	5505106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5498084_5500187_5500380_5504440_5504549_5504919
ENSMUST00000025853.16	chr19	-	992	7	FSM	ENSMUSG00000024914.17	ENSMUST00000025853.16	992	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGATTTTGGTTTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	5475007	5472838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5473054_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388_5474462_5474700
ENSMUST00000025864.11	chr19	+	452	4	FSM	ENSMUSG00000024925.12	ENSMUST00000025864.11	1126	4	102	572	102	-572	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAGTCACAGATCCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	5652002	5652895	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5652109_5652220_5652403_5652477_5652598_5652851
ENSMUST00000025867.6	chr19	+	2716	11	FSM	ENSMUSG00000024927.9	ENSMUST00000025867.6	2716	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	455	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGAGAGTAGCTGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	5687510	5698158	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5687870_5688459_5688487_5688578_5688731_5688882_5689032_5689886_5689979_5690330_5690463_5691208_5691314_5691491_5691705_5695352_5695434_5695540_5695616_5696827
ENSMUST00000025890.10	chr19	-	2586	17	FSM	ENSMUSG00000024941.10	ENSMUST00000025890.10	2586	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGGTCCCAGCTCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	5821429	5808454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809371_5809692_5809782_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
ENSMUST00000025893.7	chr19	-	1286	5	FSM	ENSMUSG00000024944.7	ENSMUST00000025893.7	1286	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGAGCCATTTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	6191578	6184412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6184832_6186008_6186090_6187507_6187671_6187759_6187871_6191066
ENSMUST00000025904.12	chr19	-	1262	6	FSM	ENSMUSG00000024953.18	ENSMUST00000025904.12	1262	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2845	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGTACAGGGTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	6887474	6884073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6884320_6884433_6884496_6884609_6884649_6884909_6885042_6885349_6885485_6886826
ENSMUST00000025910.13	chr19	+	1452	4	FSM	ENSMUSG00000024959.15	ENSMUST00000025910.13	1452	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTATCCTTCGTTTGGG	NA	NA	NA	NA	NA	NA	NA	NA	6919228	6929267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_6919809_6920234_6920415_6928007_6928199_6928766
ENSMUST00000025910.13-0	chr19	+	1261	4	FSM	ENSMUSG00000024959.15	ENSMUST00000025910.13	1452	4	0	191	0	148	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGAGTTTCAAAGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	6919228	6929076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_6919809_6920234_6920415_6928007_6928199_6928766
ENSMUST00000025921.15	chr19	-	3018	18	FSM	ENSMUSG00000024969.16	ENSMUST00000025921.15	3018	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	7272812	7254123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7272402
ENSMUST00000025931.14	chr19	+	2034	12	FSM	ENSMUSG00000024975.14	ENSMUST00000025931.14	2381	12	117	230	0	-221	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACACACACACACACACACA	NA	NA	NA	NA	NA	NA	NA	NA	53891846	53918061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_53891920_53895879_53895987_53897542_53897846_53899358_53899454_53901242_53901357_53908045_53908268_53909648_53909747_53910447_53910563_53914636_53914745_53914965_53915077_53915624_53915765_53917513
ENSMUST00000025932.9	chr19	+	3965	9	FSM	ENSMUSG00000024976.15	ENSMUST00000025932.9	3965	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTTGTGTGTGTGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	53933310	54021562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_53933445_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
ENSMUST00000025944.9	chr19	+	1802	4	FSM	ENSMUSG00000024986.13	ENSMUST00000025944.9	1802	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTGTGCACGCGTGT	NA	NA	NA	NA	NA	NA	NA	NA	37423257	37429179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_37423682_37425636_37425816_37426014_37426066_37428031
ENSMUST00000025979.13	chr19	-	3527	19	FSM	ENSMUSG00000025007.14	ENSMUST00000025979.13	3527	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	40576907	40538700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
ENSMUST00000025981.15	chr19	-	2743	14	FSM	ENSMUSG00000025008.16	ENSMUST00000025981.15	2743	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGACTTTTTTTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	40600677	40584889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_40585987_40591248_40591387_40593749_40593904_40594146_40594242_40594669_40594778_40595721_40595848_40596069_40596151_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737_40599857_40600094_40600219_40600368
ENSMUST00000025983.13	chr19	+	3173	6	FSM	ENSMUSG00000025010.15	ENSMUST00000025983.13	3819	6	29	617	0	-54	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGTAAGAGATTGGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	40819751	40836399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_40819887_40820422_40820533_40825360_40825572_40833103_40833404_40833488_40833649_40834142
ENSMUST00000026016.13	chrX	-	1983	5	FSM	ENSMUSG00000025040.14	ENSMUST00000026016.13	1983	5	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTGTGCTTATATATCC	NA	NA	NA	NA	NA	NA	NA	NA	17438564	17422802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_17424251_17424919_17425049_17434271_17434348_17437541_17437699_17438391
ENSMUST00000026050.8	chr19	+	679	6	FSM	ENSMUSG00000025068.9	ENSMUST00000026050.8	1182	6	113	390	113	-390	multi-exon	FALSE	canonical	NA	NA	NA	NA	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCTCTACCTACAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	47843521	47852839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_47843562_47843653_47843763_47846297_47846521_47847870_47847970_47851817_47851922_47852735
ENSMUST00000026125.3	chr11	-	3527	6	FSM	ENSMUSG00000025134.3	ENSMUST00000026125.3	3527	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATCACACCTCGTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	120489191	120482946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_120485694_120485805_120485981_120486080_120486145_120486745_120486894_120488460_120488593_120488930
ENSMUST00000026128.10	chr11	+	1662	3	FSM	ENSMUSG00000025135.13	ENSMUST00000026128.10	3229	3	19	1548	19	874	multi-exon	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTACCCTGGCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	120489265	120497476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_120489431_120490067_120490195_120496106
ENSMUST00000026135.15	chr11	+	1820	16	FSM	ENSMUSG00000025142.19	ENSMUST00000026135.15	1820	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	120563817	120600273	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUST00000026139.14	chr11	+	2492	18	FSM	ENSMUSG00000025145.14	ENSMUST00000026139.14	2492	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGTCCAGTTCCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	120604750	120611954	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_120604880_120605098_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609380_120609475_120609547_120609865_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
ENSMUST00000026154.9	chr19	+	1281	11	FSM	ENSMUSG00000025157.9	ENSMUST00000026154.9	1821	11	32	508	32	-301	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTGTTACCTTCTAGTC	NA	NA	NA	NA	NA	NA	NA	NA	41921960	41932035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ENSMUST00000026170.3	chr19	+	1160	3	FSM	ENSMUSG00000025171.3	ENSMUST00000026170.3	1529	3	0	369	0	-369	multi-exon	FALSE	canonical	NA	NA	NA	NA	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTCATCTGGTGCCACGC	NA	NA	NA	NA	NA	NA	NA	NA	41970201	42022713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_41970448_42020327_42020556_42022027
ENSMUST00000026175.9	chr11	+	1047	6	FSM	ENSMUSG00000025175.13	ENSMUST00000026175.9	1047	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTACTTTTGAGTCGG	NA	NA	NA	NA	NA	NA	NA	NA	121325738	121341317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_121325956_121328098_121328251_121330111_121330204_121330896_121330980_121339707_121339831_121340937
ENSMUST00000026188.10	chr19	+	3125	7	FSM	ENSMUSG00000025184.11	ENSMUST00000026188.10	4112	7	39	948	0	385	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCCCATCCAAAAGCCAACA	NA	NA	NA	NA	NA	NA	NA	NA	42507236	42579834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_42507297_42550990_42552781_42564464_42564641_42570358_42570430_42571263_42571360_42571841_42571983_42579043
ENSMUST00000026221.7	chr19	+	5455	6	FSM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	44282112	44295303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
ENSMUST00000026234.5	chr19	+	1380	5	FSM	ENSMUSG00000025213.12	ENSMUST00000026234.5	1380	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACACTGCTGCGGACAAT	NA	NA	NA	NA	NA	NA	NA	NA	45064577	45067728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_45064676_45065102_45065653_45066734_45066896_45066999_45067148_45067305
ENSMUST00000026259.16	chr19	-	1380	4	FSM	ENSMUSG00000025229.16	ENSMUST00000026259.16	1380	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGATGATTCAGACTTG	NA	NA	NA	NA	NA	NA	NA	NA	46136765	46124123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_46125045_46125421_46125625_46125803_46125934_46136639
ENSMUST00000026266.9	chr9	+	1385	7	FSM	ENSMUSG00000025236.12	ENSMUST00000026266.9	2464	7	11	1068	11	-1068	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCCAGATAAGCCAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	59198865	59222411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59217632_59220322_59220520_59221035_59221135_59222016
ENSMUST00000026289.10	chrX	+	962	6	FSM	ENSMUSG00000025260.11	ENSMUST00000026289.10	962	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGCAGTCTTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	150784840	150787438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_150784931_150785273_150785439_150786356_150786522_150786648_150786778_150786857_150786967_150787134
ENSMUST00000026296.8	chrX	+	4001	18	FSM	ENSMUSG00000025265.15	ENSMUST00000026296.8	4001	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCAGAGCACTGCTATGG	NA	NA	NA	NA	NA	NA	NA	NA	149830165	149872517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_149830978_149849176_149849351_149849705_149849884_149850008_149850448_149851872_149851963_149852637_149852787_149855168_149855326_149855429_149855569_149861954_149862014_149862153_149862301_149862874_149862968_149863112_149863193_149868626_149868658_149869109_149869212_149869515_149869642_149869815_149869978_149870963_149871108_149871598
ENSMUST00000026303.16	chrX	-	1884	6	FSM	ENSMUSG00000025269.17	ENSMUST00000026303.16	1884	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCATGTTGAGTGGATAT	NA	NA	NA	NA	NA	NA	NA	NA	149371145	149354503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370918
ENSMUST00000026328.11	chrX	-	990	7	FSM	ENSMUSG00000025289.16	ENSMUST00000026328.11	990	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1410	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGTTTGCCATTGTAATTT	NA	NA	NA	NA	NA	NA	NA	NA	154121463	154106913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_154107025_154109590_154109626_154111441_154111573_154113298_154113422_154115351_154115469_154117833_154117952_154121108
ENSMUST00000026354.15	chr8	+	1970	13	FSM	ENSMUSG00000025316.17	ENSMUST00000026354.15	1970	13	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GGAAAAAAAAAAAAAAACAA	NA	NA	NA	NA	NA	NA	NA	NA	122677318	122752676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ENSMUST00000026387.11	chr5	-	1548	5	FSM	ENSMUSG00000025337.11	ENSMUST00000026387.11	1548	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTGCATTTCTAGT	NA	NA	NA	NA	NA	NA	NA	NA	130284371	130274571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050
ENSMUST00000026406.14	chr10	-	1258	5	FSM	ENSMUSG00000025350.16	ENSMUST00000026406.14	1258	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGCAGGTGTACAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	128755166	128749461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_128749806_128750003_128750168_128753748_128754008_128754121_128754462_128755015
ENSMUST00000026407.9	chr10	+	1063	8	FSM	ENSMUSG00000025351.15	ENSMUST00000026407.9	1063	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAGGAGATGGTCTCA	NA	NA	NA	NA	NA	NA	NA	NA	128745567	128748684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_128745828_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
ENSMUST00000026425.13	chr10	-	2432	12	FSM	ENSMUSG00000025364.14	ENSMUST00000026425.13	2432	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTTGTGTGTTCTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	128401803	128393634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
ENSMUST00000026434.13	chr11	+	827	8	FSM	ENSMUSG00000025371.13	ENSMUST00000026434.13	1557	8	20	710	20	-710	multi-exon	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGCACCTTTGTCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	119804655	119809664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_119804764_119806238_119806349_119806457_119806546_119806850_119806938_119807506_119807573_119807754_119807836_119808809_119808865_119809432
ENSMUST00000026448.10	chr11	-	3193	10	FSM	ENSMUSG00000025384.16	ENSMUST00000026448.10	3193	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTGTGTTGTGCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	120269590	120260387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120263053_120263932_120264070_120264707_120265478_120266242_120266400_120267531_120268488_120269153_120269273_120269367
ENSMUST00000026459.6	chr10	+	1916	10	FSM	ENSMUSG00000025393.13	ENSMUST00000026459.6	1916	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9060	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATGGGCCTTGTGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	127919141	127926260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
ENSMUST00000026475.15	chr10	+	890	4	FSM	ENSMUSG00000025408.16	ENSMUST00000026475.15	890	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	413	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCACTTTTTCTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	127126642	127132157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_127126761_127129580_127129629_127131189_127131348_127131591
ENSMUST00000026479.11	chr10	+	1276	14	FSM	ENSMUSG00000025410.11	ENSMUST00000026479.11	1784	14	0	508	0	-508	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTGCCAGCATTGATGC	NA	NA	NA	NA	NA	NA	NA	NA	127102255	127117311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
ENSMUST00000026487.6	chr18	+	889	3	FSM	ENSMUSG00000090000.3	ENSMUST00000026487.6	1402	3	46	467	18	-460	multi-exon	FALSE	canonical	NA	NA	NA	NA	658	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTGACCTGAACAGTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	77017758	77028841	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_77017913_77027263_77027366_77028208
ENSMUST00000026495.15	chr18	+	2471	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTGGTTGATGAGTC	NA	NA	NA	NA	NA	NA	NA	NA	77861428	77870569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
ENSMUST00000026506.5	chr7	+	1504	7	FSM	ENSMUSG00000025439.6	ENSMUST00000026506.5	1504	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGCTGTGATTTTGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	97345840	97368086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_97346077_97354795_97354933_97360906_97361006_97361833_97361942_97363113_97363288_97365657_97365747_97367425
ENSMUST00000026520.14	chr13	+	2040	11	FSM	ENSMUSG00000025451.16	ENSMUST00000026520.14	2551	11	0	511	0	316	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGATTCTTCATTGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	119565457	119594243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_119565697_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
ENSMUST00000026538.13	chr7	-	854	8	FSM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	69	634	69	-634	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAGGAAGGCCAACTTC	NA	NA	NA	NA	NA	NA	NA	NA	139696320	139686256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139692848_139693047_139696219
ENSMUST00000026557.10	chr7	-	2268	4	FSM	ENSMUSG00000025484.10	ENSMUST00000026557.10	2268	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGTCTCTATGTCTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	140437022	140433306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_140434537_140434677_140434735_140434986_140435079_140436133
ENSMUST00000026558.7	chr7	+	2132	10	FSM	ENSMUSG00000025485.14	ENSMUST00000026558.7	3406	10	0	1274	0	-58	multi-exon	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAACTGGTGCTGCTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	140436869	140442369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_140437468_140437757_140437806_140437894_140438486_140438775_140438868_140439351_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
ENSMUST00000026560.14-1	chr7	+	1571	13	FSM	ENSMUSG00000025487.16	ENSMUST00000026560.14	1989	13	306	112	-190	-82	multi-exon	FALSE	canonical	NA	NA	NA	NA	552	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGGGCACGAATGGGA	NA	NA	NA	NA	NA	NA	NA	NA	140462186	140478443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
ENSMUST00000026562.6	chr7	-	765	2	FSM	ENSMUSG00000025489.6	ENSMUST00000026562.6	765	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGGCTCTTCCTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	140530204	140528870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_140529362_140529930
ENSMUST00000026578.14	chr7	+	1375	6	FSM	ENSMUSG00000025505.17	ENSMUST00000026578.14	1800	6	30	395	30	-50	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACATAGTGATTTGCAAGT	NA	NA	NA	NA	NA	NA	NA	NA	140908072	140916674	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_140908180_140911330_140911475_140912822_140912843_140913550_140913645_140913923_140914017_140915757
ENSMUST00000026585.14	chr7	+	1466	8	FSM	ENSMUSG00000025511.16	ENSMUST00000026585.14	1466	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1275	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGAAGTTCTTTCATTT	NA	NA	NA	NA	NA	NA	NA	NA	141055152	141073340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_141055411_141062399_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
ENSMUST00000026608.11	chr5	+	462	6	FSM	ENSMUSG00000025532.14	ENSMUST00000026608.11	1492	6	38	992	17	-274	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAACAGAGCAAAAGCACTAG	NA	NA	NA	NA	NA	NA	NA	NA	130058168	130088638	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
ENSMUST00000026649.14	chr11	+	1520	4	FSM	ENSMUSG00000048277.16	ENSMUST00000026649.14	1520	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTTGTGCTGGGTGGCGC	NA	NA	NA	NA	NA	NA	NA	NA	117700493	117705109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_117700630_117703284_117703523_117703871_117704012_117704103
ENSMUST00000026661.4	chr11	-	723	7	FSM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	128	589	128	-589	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATCACTCCGTGTGCCGC	NA	NA	NA	NA	NA	NA	NA	NA	117716790	117706940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716426_117716459_117716539
ENSMUST00000026681.7	chr8	-	1097	7	FSM	ENSMUSG00000025591.7	ENSMUST00000026681.7	4328	7	22	3209	22	-3209	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTCATTATAGCCAAAT	NA	NA	NA	NA	NA	NA	NA	NA	66939149	66928978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935196_66936709_66936823_66939063
ENSMUST00000026700.8	chr16	+	1652	5	FSM	ENSMUSG00000025610.8	ENSMUST00000026700.8	1652	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGTCTTGCTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	87350217	87392224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_87350484_87352789_87352899_87367185_87367248_87378017_87378134_87391125
ENSMUST00000026723.9	chrX	+	1289	9	FSM	ENSMUSG00000025630.9	ENSMUST00000026723.9	1289	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	527	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCACTTTTTGAATTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	52077013	52110536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52101153_52101172_52105223_52105307_52108981_52109029_52109199_52109277_52109943
ENSMUST00000026737.12	chr9	+	1426	6	FSM	ENSMUSG00000025647.17	ENSMUST00000026737.12	1834	6	17	391	17	126	multi-exon	FALSE	canonical	NA	NA	NA	NA	217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCACTGTCTTTTTACTG	NA	NA	NA	NA	NA	NA	NA	NA	108867669	108886401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_108867833_108869937_108870095_108880434_108880522_108885045_108885162_108885354_108885574_108885717
ENSMUST00000026743.14	chr9	+	1653	13	FSM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	NA	NA	NA	NA	NA	NA	NA	108765700	108778691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
ENSMUST00000026760.3	chrX	+	1771	3	FSM	ENSMUSG00000025666.17	ENSMUST00000026760.3	4007	3	0	2236	0	-95	multi-exon	TRUE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCATATACCTTAAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	80114321	80139242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_80114767_80127896_80128038_80138057
ENSMUST00000026826.14	chr17	-	2466	7	FSM	ENSMUSG00000025730.15	ENSMUST00000026826.14	2466	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTGTCTGGCTTCATCT	NA	NA	NA	NA	NA	NA	NA	NA	26138688	26101087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26138338_26138524_26138625
ENSMUST00000026827.16	chr17	+	1243	6	FSM	ENSMUSG00000025731.17	ENSMUST00000026827.16	1243	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGGGAATACCTGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	26094047	26096143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634_26095714_26095923
ENSMUST00000026828.7	chr17	-	842	5	FSM	ENSMUSG00000025732.7	ENSMUST00000026828.7	842	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	NA	NA	NA	NA	NA	NA	NA	NA	26087738	26082671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26083014_26083224_26083327_26083567_26083696_26087387_26087518_26087598
ENSMUST00000026832.14	chr17	+	2091	9	FSM	ENSMUSG00000025736.16	ENSMUST00000026832.14	2091	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCCTGGTGGATGCGCC	NA	NA	NA	NA	NA	NA	NA	NA	26048016	26050816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_26048138_26048213_26048313_26048457_26048507_26048579_26048677_26048758_26048828_26048915_26049036_26049112_26049181_26049273_26049409_26049483
ENSMUST00000026839.5	chrX	-	3699	7	FSM	ENSMUSG00000025742.6	ENSMUST00000026839.5	3699	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTCTTGTCATCCTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	166165745	166129317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
ENSMUST00000026841.15	chr5	+	2033	16	FSM	ENSMUSG00000059447.14	ENSMUST00000026841.15	2033	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAGTCTCGTTATTAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	30360245	30389591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_30360338_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
ENSMUST00000026859.11	chr3	-	1740	12	FSM	ENSMUSG00000025759.12	ENSMUST00000026859.11	3151	12	69	1342	-11	69	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAAAACATTCTGGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	40801251	40773879	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_40774156_40776297_40776546_40776629_40776734_40778261_40778397_40781308_40781418_40785058_40785115_40786447_40786593_40788378_40788493_40789603_40789845_40791523_40791568_40793848_40793941_40801075
ENSMUST00000026881.11	chr1	+	632	5	FSM	ENSMUSG00000025779.11	ENSMUST00000026881.11	632	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTTCTGTTTTTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	16758656	16779835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_16758844_16761907_16761998_16771018_16771148_16776396_16776450_16779662
ENSMUST00000026887.14	chr2	-	1060	9	FSM	ENSMUSG00000025781.15	ENSMUST00000026887.14	1060	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1943	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATTGTAACTTTCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	10085238	10060826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_10060973_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ENSMUST00000026891.5	chr9	+	1053	8	FSM	ENSMUSG00000025785.6	ENSMUST00000026891.5	1053	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTTGTTAGCATCTCC	NA	NA	NA	NA	NA	NA	NA	NA	122942279	122965194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_122942388_122947955_122948058_122948305_122948401_122956870_122957037_122959588_122959660_122959891_122960016_122960949_122961106_122964963
ENSMUST00000026899.4	chr11	+	2023	11	FSM	ENSMUSG00000025792.10	ENSMUST00000026899.4	2023	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGGGGGCTGGCAGATC	NA	NA	NA	NA	NA	NA	NA	NA	120382665	120390013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_120382903_120385302_120385423_120385785_120385901_120385985_120386035_120386271_120386314_120387248_120387293_120387461_120387533_120387839_120387933_120388209_120388288_120388745_120388803_120388896
ENSMUST00000026901.12	chr7	+	653	1	FSM	ENSMUSG00000046721.12	ENSMUST00000026901.12	653	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6609	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTACACAGAATAATAAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	44974388	44975041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_44974400_44975000
ENSMUST00000026937.12	chr5	+	544	5	FSM	ENSMUSG00000025825.13	ENSMUST00000026937.12	957	5	70	343	15	147	multi-exon	FALSE	canonical	NA	NA	NA	NA	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTGCTTCCTGCCACCC	NA	NA	NA	NA	NA	NA	NA	NA	113910878	113916006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_113911006_113912323_113912438_113913278_113913390_113914831_113914911_113915893
ENSMUST00000026976.12	chr5	+	2107	9	FSM	ENSMUSG00000025858.13	ENSMUST00000026976.12	2107	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTAGTCCTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	139238078	139255806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_139238375_139248235_139248315_139248624_139248707_139249233_139249384_139251381_139251521_139252758_139252900_139252981_139253058_139253157_139253231_139254735
ENSMUST00000026986.7	chr13	+	309	2	FSM	ENSMUSG00000025868.7	ENSMUST00000026986.7	648	2	0	339	0	-339	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCACAGGGTTTCACGGTC	NA	NA	NA	NA	NA	NA	NA	NA	54738019	54738632	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_54738233_54738536
ENSMUST00000026988.11	chr13	+	1046	4	FSM	ENSMUSG00000025870.11	ENSMUST00000026988.11	1046	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCAGCAGGCTCAGTGCC	NA	NA	NA	NA	NA	NA	NA	NA	54722827	54728941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_54723091_54723562_54723762_54726605_54726782_54728533
ENSMUST00000026993.14	chr13	+	1084	8	FSM	ENSMUSG00000025875.15	ENSMUST00000026993.14	1585	8	86	415	-81	139	multi-exon	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTACCCACTGAGGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	54937275	54944174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969
ENSMUST00000026993.14-1	chr13	+	1094	8	FSM	ENSMUSG00000025875.15	ENSMUST00000026993.14	1585	8	268	223	50	-223	multi-exon	FALSE	canonical	NA	NA	NA	NA	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCCCCTGGTCTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	54937457	54944366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969
ENSMUST00000026999.10	chr18	+	2850	4	FSM	ENSMUSG00000025880.12	ENSMUST00000026999.10	4278	4	1354	74	0	-74	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTATCACCTAGCTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	75501953	75528932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_75502640_75503965_75504020_75508944_75509020_75526897
ENSMUST00000027036.11	chr1	+	1314	9	FSM	ENSMUSG00000025903.15	ENSMUST00000027036.11	2507	9	69	1124	-4	263	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTCAAGAAAAAACAAGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	4878114	4915838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
ENSMUST00000027053.8	chr1	+	1174	6	FSM	ENSMUSG00000025921.8	ENSMUST00000027053.8	3587	6	0	2413	0	-2413	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATCGATTTCTAGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	16175997	16201545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_16176531_16178018_16178255_16198388_16198488_16199419_16199566_16201298_16201431_16201517
ENSMUST00000027103.7	chr1	+	4486	12	FSM	ENSMUSG00000025962.16	ENSMUST00000027103.7	4486	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGTACAGTTTGATACTT	NA	NA	NA	NA	NA	NA	NA	NA	63769772	63793814	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621_63774731_63775003_63775128_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844_63788930_63790422_63790538_63791455
ENSMUST00000027114.6	chr1	+	1510	5	FSM	ENSMUSG00000025971.7	ENSMUST00000027114.6	3540	5	431	1599	431	-1599	multi-exon	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTAGCTGTAAGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	57445917	57455513	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_57446382_57449070_57449143_57450881_57451009_57452398_57452547_57454814
ENSMUST00000027125.7	chr1	+	628	5	FSM	ENSMUSG00000025981.14	ENSMUST00000027125.7	1733	5	99	1006	99	-257	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTGAAACAAATGGTAGCA	NA	NA	NA	NA	NA	NA	NA	NA	55092027	55110855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_55092150_55100433_55100584_55103339_55103533_55106655_55106758_55110794
ENSMUST00000027153.6	chr1	-	1916	11	FSM	ENSMUSG00000026003.6	ENSMUST00000027153.6	1916	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1087	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGCCCTGGGGAATGAGA	NA	NA	NA	NA	NA	NA	NA	NA	66902436	66869997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_66870687_66876120_66876208_66877437_66877566_66880780_66880895_66882239_66882342_66884326_66884492_66887558_66887626_66892285_66892451_66893782_66893921_66896557_66896714_66902331
ENSMUST00000027157.10	chr1	+	627	6	FSM	ENSMUSG00000026005.16	ENSMUST00000027157.10	2692	6	76	1989	0	-183	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAACTTACTAAGAAACGT	NA	NA	NA	NA	NA	NA	NA	NA	66740065	66756975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ENSMUST00000027174.10	chr1	+	1713	13	FSM	ENSMUSG00000026020.10	ENSMUST00000027174.10	1713	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	59724135	59750669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59750429
ENSMUST00000027186.12	chr1	-	6189	16	FSM	ENSMUSG00000026028.13	ENSMUST00000027186.12	6189	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCTTGTGATTTT	NA	NA	NA	NA	NA	NA	NA	NA	59012589	58939607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_58943342_58945864_58945971_58947681_58947949_58949108_58949408_58950794_58950996_58951344_58951422_58954844_58954983_58957930_58958006_58958379_58958511_58960232_58960312_58960838_58961049_58962680_58962798_58965809_58965887_58974904_58975100_58985405_58985695_59012395
ENSMUST00000027193.9	chr1	+	476	3	FSM	ENSMUSG00000026032.9	ENSMUST00000027193.9	763	3	0	287	0	-131	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCAGGCAACATCACCTTC	NA	NA	NA	NA	NA	NA	NA	NA	58625542	58634836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_58625830_58630248_58630409_58634807
ENSMUST00000027215.12	chr1	-	1272	8	FSM	ENSMUSG00000026049.12	ENSMUST00000027215.12	1272	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTTGTTTTACTCT	NA	NA	NA	NA	NA	NA	NA	NA	44141551	44125772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44140626_44140683_44141059_44141118_44141487
ENSMUST00000027232.15	chr1	-	2421	6	FSM	ENSMUSG00000117310.3	ENSMUST00000027232.15	4129	6	64	1644	0	-367	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCGTCACTGAGGACACTT	NA	NA	NA	NA	NA	NA	NA	NA	30988772	30981027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_30982405_30983012_30983088_30983616_30983748_30984018_30984112_30985118_30985721_30988629
ENSMUST00000027249.12	chr1	-	2975	7	FSM	ENSMUSG00000026080.14	ENSMUST00000027249.12	2975	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTATCTGGGTTTGATTGT	NA	NA	NA	NA	NA	NA	NA	NA	38937091	38902947	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_38905117_38907061_38907168_38910681_38910917_38913029_38913122_38923430_38923563_38935017_38935138_38936970
ENSMUST00000027252.8	chr1	+	4120	24	FSM	ENSMUSG00000026083.13	ENSMUST00000027252.8	7797	24	119	3558	119	-3558	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTTCTACAGATTTTG	NA	NA	NA	NA	NA	NA	NA	NA	38037209	38091102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058616_38060674_38060893_38061244_38061396_38071357_38071457_38072148_38072239_38073109_38073185_38075073_38075355_38076283_38076392_38076627_38076739_38079753_38079822_38080777_38080920_38083784_38083917_38084404_38084588_38084728_38084891_38085692_38085825_38087873_38088006_38088097_38088175_38088256_38088422_38089267_38089407_38090203_38090366_38090686
ENSMUST00000027256.12	chr1	+	717	6	FSM	ENSMUSG00000026087.12	ENSMUST00000027256.12	969	6	55	197	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGCTGATGGAGTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	37929612	37937419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_37929666_37932023_37932105_37933019_37933097_37934410_37934492_37936768_37936916_37937141
ENSMUST00000027265.10	chr1	+	1518	8	FSM	ENSMUSG00000026096.15	ENSMUST00000027265.10	1868	8	49	301	10	-301	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAGAAAATCTATTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	53352831	53365201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_53353018_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
ENSMUST00000027266.4	chr1	+	695	4	FSM	ENSMUSG00000026097.10	ENSMUST00000027266.4	1910	4	16	1199	16	-1199	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACTTAAGGATGCCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	53336269	53348269	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_53336348_53338130_53338312_53344613_53344766_53347985
ENSMUST00000027279.12	chr1	-	2838	6	FSM	ENSMUSG00000026107.12	ENSMUST00000027279.12	2838	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATATAGGAGTAACAGAACT	NA	NA	NA	NA	NA	NA	NA	NA	51517558	51508646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51516983
ENSMUST00000027286.7	chr1	-	1692	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	103	2068	103	-2068	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTTTATTGGCATGTAGC	NA	NA	NA	NA	NA	NA	NA	NA	37469081	37458232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_37459709_37467422_37467507_37468949
ENSMUST00000027297.11	chr1	+	783	8	FSM	ENSMUSG00000026123.12	ENSMUST00000027297.11	3279	8	0	2496	0	-2496	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTGCAGTAATTTGATT	NA	NA	NA	NA	NA	NA	NA	NA	34889072	34916165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_34889145_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380_34908487_34915991
ENSMUST00000027322.14	chr1	+	1916	7	FSM	ENSMUSG00000026142.16	ENSMUST00000027322.14	3636	7	0	1720	0	-1720	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGAGTGGGCGACTTAAC	NA	NA	NA	NA	NA	NA	NA	NA	82294172	82421367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_82294370_82318039_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583
ENSMUST00000027338.4	chr1	-	683	3	FSM	ENSMUSG00000026154.5	ENSMUST00000027338.4	683	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTATTATTTTATTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	24044737	24035019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_24035442_24042237_24042388_24044626
ENSMUST00000027357.12	chr1	-	1479	10	FSM	ENSMUSG00000026171.13	ENSMUST00000027357.12	1479	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTATGTGGTATGACTCTT	NA	NA	NA	NA	NA	NA	NA	NA	74640556	74632906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_74633562_74633718_74633854_74634367_74634461_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74637952_74638224_74638300_74640483
ENSMUST00000027367.14	chr1	+	813	7	FSM	ENSMUSG00000026176.14	ENSMUST00000027367.14	2876	7	286	1777	286	-1777	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACCCTTCTTTGAGCAAC	NA	NA	NA	NA	NA	NA	NA	NA	74430953	74434667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_74431124_74432436_74432586_74432955_74433061_74433177_74433235_74433798_74433892_74433995_74434182_74434614
ENSMUST00000027373.12	chr16	+	2862	8	FSM	ENSMUSG00000026181.14	ENSMUST00000027373.12	4922	8	0	2060	0	-2060	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTCTCCTGTGACTTG	NA	NA	NA	NA	NA	NA	NA	NA	16714332	16743168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_16714489_16721187_16721456_16728802_16728946_16731897_16732101_16733023_16733213_16735523_16735668_16740326_16740421_16741503
ENSMUST00000027394.12	chr1	+	1316	9	FSM	ENSMUSG00000026197.13	ENSMUST00000027394.12	1316	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGAGTGCTGTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	75145298	75148269	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
ENSMUST00000027446.11	chr1	+	2231	7	FSM	ENSMUSG00000026240.13	ENSMUST00000027446.11	2231	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	86514821	86534222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_86514958_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
ENSMUST00000027464.9	chr1	+	1156	4	FSM	ENSMUSG00000026248.10	ENSMUST00000027464.9	1424	4	98	170	98	-170	multi-exon	FALSE	canonical	NA	NA	NA	NA	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGACAGGGATTTGTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	79753832	79758992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_79754029_79755574_79756044_79757204_79757384_79758680
ENSMUST00000027467.11	chr1	-	1673	9	FSM	ENSMUSG00000026249.11	ENSMUST00000027467.11	2210	9	61	476	61	-476	multi-exon	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTGATCAGTTATCTAGG	NA	NA	NA	NA	NA	NA	NA	NA	79836352	79772389	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_79772760_79774542_79774627_79777184_79777272_79779172_79779274_79780563_79780763_79788270_79788469_79794444_79794673_79798993_79799275_79836227
ENSMUST00000027472.7	chr1	+	1382	4	FSM	ENSMUSG00000026255.16	ENSMUST00000027472.7	1854	4	0	472	0	-472	multi-exon	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCCTCGTTCATTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	87192084	87238089	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_87192477_87217189_87217338_87225350_87225486_87237382
ENSMUST00000027478.7	chr1	-	1585	10	FSM	ENSMUSG00000026260.13	ENSMUST00000027478.7	2020	10	113	322	113	-322	multi-exon	FALSE	canonical	NA	NA	NA	NA	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGTGAAGAATGGCCACAGA	NA	NA	NA	NA	NA	NA	NA	NA	92401469	92367053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
ENSMUST00000027488.11	chr1	+	2902	12	FSM	ENSMUSG00000026270.12	ENSMUST00000027488.11	2902	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATTAGTCTTGTTCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	92862097	92875663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004_92868223_92870203_92870346_92871021_92871189_92871400_92871664_92872416_92872620_92872738_92873001_92874495_92874696_92874936_92874983_92875230
ENSMUST00000027494.11	chr1	+	1100	10	FSM	ENSMUSG00000026275.14	ENSMUST00000027494.11	10315	10	801	8414	751	7215	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTCACCTGGTCCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	93271376	93292797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278737_93279227_93279359_93280238_93280402_93282050_93282168_93285478_93285584_93288447_93288535_93292611
ENSMUST00000027495.15	chr1	+	3779	13	FSM	ENSMUSG00000026276.21	ENSMUST00000027495.15	3779	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGATTTTTACGTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	93406685	93437982	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ENSMUST00000027495.15-0	chr1	+	3226	13	FSM	ENSMUSG00000026276.21	ENSMUST00000027495.15	3779	13	26	527	26	-527	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	93406711	93437455	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ENSMUST00000027499.13	chr1	+	1117	5	FSM	ENSMUSG00000026278.15	ENSMUST00000027499.13	1468	5	42	309	0	245	multi-exon	FALSE	canonical	NA	NA	NA	NA	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCCCCACCCAAGGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	93613423	93623177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_93613577_93614139_93614392_93616878_93617008_93621781_93621946_93622758
ENSMUST00000027505.13	chr1	+	1787	8	FSM	ENSMUSG00000026283.14	ENSMUST00000027505.13	4533	8	18	2728	18	985	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCTCCTGAAAGCCACGG	NA	NA	NA	NA	NA	NA	NA	NA	93731704	93747089	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_93731762_93733769_93733842_93739503_93739671_93740128_93740241_93740387_93740482_93744096_93744233_93744359_93744422_93746002
ENSMUST00000027554.8	chr8	+	1571	3	FSM	ENSMUSG00000026317.8	ENSMUST00000027554.8	6857	3	893	4393	893	-4393	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGCAGTGCACTGCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	14939003	14947327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_14939119_14944571_14945231_14946530
ENSMUST00000027581.7	chr1	+	2691	2	FSM	ENSMUSG00000026343.7	ENSMUST00000027581.7	2691	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCCCCTCACCACTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	125604731	125801599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_125605930_125800106
ENSMUST00000027634.13	chr1	-	569	4	FSM	ENSMUSG00000026385.17	ENSMUST00000027634.13	569	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTGTTGTCTGGGTGCGT	NA	NA	NA	NA	NA	NA	NA	NA	120048808	120041009	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_120041264_120044115_120044179_120047624_120047743_120048674
ENSMUST00000027650.13	chr1	-	1182	10	FSM	ENSMUSG00000026399.13	ENSMUST00000027650.13	2533	10	126	1225	126	-1225	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTCCAAGAAGAATGGATA	NA	NA	NA	NA	NA	NA	NA	NA	130390355	130367988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
ENSMUST00000027677.8	chr1	+	769	6	FSM	ENSMUSG00000026421.15	ENSMUST00000027677.8	1823	6	0	1054	0	-1054	multi-exon	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCCTTGGACACCTCCGA	NA	NA	NA	NA	NA	NA	NA	NA	135656884	135678916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_135657013_135667137_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
ENSMUST00000027684.11	chr1	+	1713	7	FSM	ENSMUSG00000026426.11	ENSMUST00000027684.11	1713	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTGTGTATGGTGCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	135074561	135084007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_135074839_135080208_135080290_135080530_135080605_135081913_135082008_135082145_135082214_135082450_135082522_135082959
ENSMUST00000027726.14	chr1	+	1185	9	FSM	ENSMUSG00000026456.19	ENSMUST00000027726.14	1837	9	0	652	0	-652	multi-exon	TRUE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTCCCTCACCCCATGTG	NA	NA	NA	NA	NA	NA	NA	NA	134333518	134338826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
ENSMUST00000027726.14-1	chr1	+	1163	9	FSM	ENSMUSG00000026456.19	ENSMUST00000027726.14	1837	9	223	451	223	-451	multi-exon	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGTGATAAAAGGTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	134333741	134339027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
ENSMUST00000027727.15	chr1	+	2088	8	FSM	ENSMUSG00000026457.15	ENSMUST00000027727.15	3123	8	93	942	15	-939	multi-exon	FALSE	canonical	NA	NA	NA	NA	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTCAGCTTCTACTGAG	NA	NA	NA	NA	NA	NA	NA	NA	134343208	134360147	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_134343324_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
ENSMUST00000027730.6	chr1	+	1495	3	FSM	ENSMUSG00000026459.6	ENSMUST00000027730.6	1495	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	863	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATCTGCAATGATATTA	NA	NA	NA	NA	NA	NA	NA	NA	134217726	134220286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_134218265_134218830_134218913_134219411
ENSMUST00000027748.8	chr1	+	713	5	FSM	ENSMUSG00000026475.8	ENSMUST00000027748.8	2339	5	0	1626	0	-1626	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACACACTTGAGCCTCCG	NA	NA	NA	NA	NA	NA	NA	NA	153616094	153619588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_153616259_153616608_153616720_153617365_153617428_153617708_153617876_153619379
ENSMUST00000027780.6	chr1	+	1662	8	FSM	ENSMUSG00000026499.6	ENSMUST00000027780.6	3471	8	0	1809	0	-1809	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGGTTGAGCACAACATGA	NA	NA	NA	NA	NA	NA	NA	NA	180553607	180579960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_180553944_180560730_180560873_180561941_180562083_180564256_180564416_180566027_180566203_180572635_180572823_180574358_180574644_180579723
ENSMUST00000027781.7	chr1	+	471	4	FSM	ENSMUSG00000026500.7	ENSMUST00000027781.7	471	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	740	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTTTTACATGAAATCC	NA	NA	NA	NA	NA	NA	NA	NA	178146694	178150258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_178146774_178149309_178149425_178149506_178149571_178150045
ENSMUST00000027783.14	chr1	+	2471	5	FSM	ENSMUSG00000026502.14	ENSMUST00000027783.14	8802	5	315	6016	101	384	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATAGTGTGGATCATGG	NA	NA	NA	NA	NA	NA	NA	NA	178015412	178078851	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_178015524_178065477_178065551_178070177_178070272_178071906_178072049_178076800
ENSMUST00000027792.6	chr1	+	918	3	FSM	ENSMUSG00000026511.8	ENSMUST00000027792.6	1367	3	31	418	31	70	multi-exon	FALSE	canonical	NA	NA	NA	NA	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACAGAGCGAGACGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	181952345	181959554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_181952541_181956248_181956318_181958900
ENSMUST00000027802.9	chr1	+	1580	7	FSM	ENSMUSG00000026520.9	ENSMUST00000027802.9	1580	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAGTCTCACTGTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	180731857	180735653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_180732096_180732308_180732380_180733438_180733619_180733727_180733950_180734159_180734253_180734354_180734519_180735041
ENSMUST00000027853.6	chr1	+	1025	5	FSM	ENSMUSG00000026568.7	ENSMUST00000027853.6	1025	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	613	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACCCCCCACTTCATCTT	NA	NA	NA	NA	NA	NA	NA	NA	165288605	165308783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_165289081_165302522_165302564_165305789_165305875_165307035_165307148_165308471
ENSMUST00000027863.13	chr1	-	2580	6	FSM	ENSMUSG00000026576.13	ENSMUST00000027863.13	2580	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACGTGTGTGACTCGATT	NA	NA	NA	NA	NA	NA	NA	NA	164285924	164264677	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_164266109_164266867_164266952_164269025_164269211_164270763_164270920_164281057_164281187_164285329
ENSMUST00000027877.7	chr1	+	3167	20	FSM	ENSMUSG00000026585.14	ENSMUST00000027877.7	3946	20	0	779	0	-779	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCTGTGTCTGGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	163607151	163743899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_163607472_163610553_163610686_163621517_163621673_163623553_163623610_163624820_163624963_163641937_163642038_163643393_163643519_163645401_163645501_163653256_163653436_163656701_163656865_163676229_163676331_163683604_163683714_163685040_163685154_163689523_163689690_163690279_163690406_163693007_163693107_163696269_163696356_163710951_163711142_163715774_163715875_163743293
ENSMUST00000027916.13	chr1	+	1503	9	FSM	ENSMUSG00000026617.17	ENSMUST00000027916.13	2200	9	58	639	27	357	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTGTGTAGCCCTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	185064403	185089335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
ENSMUST00000027933.11	chr1	-	4212	15	FSM	ENSMUSG00000037474.14	ENSMUST00000027933.11	4212	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTGGAAGAGTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	191307656	191269476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
ENSMUST00000027933.11-0	chr1	-	3749	15	FSM	ENSMUSG00000037474.14	ENSMUST00000027933.11	4212	15	33	430	33	-430	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCAGGCTCTGCTTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	191307623	191269906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
ENSMUST00000027945.6	chr1	-	1196	10	FSM	ENSMUSG00000026632.18	ENSMUST00000027945.6	1196	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTATTTTTAAAAAAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	190795102	190778038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_190778518_190781478_190781557_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
ENSMUST00000027947.13	chr1	+	2971	10	FSM	ENSMUSG00000026634.17	ENSMUST00000027947.13	3562	10	0	591	0	-591	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATAGTAGACTCAGATT	NA	NA	NA	NA	NA	NA	NA	NA	190657308	190678568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_190657377_190658884_190658932_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
ENSMUST00000027965.11	chr2	+	1969	4	FSM	ENSMUSG00000026655.16	ENSMUST00000027965.11	3156	4	20	1167	0	-1167	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTCTGTTTCCTTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	3714514	3782012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_3714674_3773832_3774017_3779454_3779606_3780537
ENSMUST00000027970.14	chr1	-	1374	6	FSM	ENSMUSG00000026659.14	ENSMUST00000027970.14	1374	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	399	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGTGTTAGATGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	170713109	170701756	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708598_170712635
ENSMUST00000027975.8-1	chr2	+	1081	9	FSM	ENSMUSG00000026664.8	ENSMUST00000027975.8	1438	9	61	296	61	-296	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACACAGAAGGATGCTATC	NA	NA	NA	NA	NA	NA	NA	NA	4923890	4943245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_4923956_4927638_4927698_4930408_4930520_4932160_4932330_4933481_4933564_4935523_4935706_4940779_4940930_4942486_4942622_4943117
ENSMUST00000027986.5	chr2	-	2411	15	FSM	ENSMUSG00000026672.12	ENSMUST00000027986.5	2411	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTGTTATCTGATTTA	NA	NA	NA	NA	NA	NA	NA	NA	5068749	5025454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_5026040_5026133_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797_5051011_5057798_5058002_5059350_5059528_5068717
ENSMUST00000027989.13	chr1	-	4612	9	FSM	ENSMUSG00000026675.13	ENSMUST00000027989.13	4612	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTAGACTCAGTTAATTT	NA	NA	NA	NA	NA	NA	NA	NA	169796810	169777103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_169780704_169783503_169783603_169786991_169787049_169787255_169787361_169788573_169788769_169791959_169792075_169793255_169793349_169794798_169795003_169796666
ENSMUST00000028063.7	chr2	+	1652	5	FSM	ENSMUSG00000026730.13	ENSMUST00000028063.7	1652	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTGTTTTCCACTTAT	NA	NA	NA	NA	NA	NA	NA	NA	12928910	13006425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_12929010_12982970_12983429_12985103_12985370_12999560_12999632_13005667
ENSMUST00000028083.6	chr2	-	1160	8	FSM	ENSMUSG00000026750.7	ENSMUST00000028083.6	1160	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	807	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	NA	NA	NA	NA	NA	NA	NA	NA	38534099	38478047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
ENSMUST00000028100.13	chr18	-	3965	14	FSM	ENSMUSG00000024240.14	ENSMUST00000028100.13	3965	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTGCAGTGGTCTTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	6490856	6435952	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_6437308_6439591_6439956_6440048_6440191_6441121_6441244_6448904_6449258_6450068_6450218_6450296_6450387_6450465_6450640_6452232_6452393_6453508_6453658_6454186_6454394_6455188_6455335_6462831_6462992_6490462
ENSMUST00000028105.13	chr2	-	2344	15	FSM	ENSMUSG00000026767.13	ENSMUST00000028105.13	2344	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	NA	NA	NA	NA	NA	NA	NA	12424281	12352073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
ENSMUST00000028117.4	chr2	+	4707	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACATTCCAACTGAAGCAT	NA	NA	NA	NA	NA	NA	NA	NA	23046380	23089272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
ENSMUST00000028199.12	chr2	+	2397	5	FSM	ENSMUSG00000026848.15	ENSMUST00000028199.12	3039	5	32	610	32	-610	multi-exon	FALSE	canonical	NA	NA	NA	NA	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGTGAGCCTATCCTT	NA	NA	NA	NA	NA	NA	NA	NA	30843002	30848417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_30843236_30843763_30844030_30845789_30845966_30846459_30846588_30846823
ENSMUST00000028200.9	chr2	-	1401	5	FSM	ENSMUSG00000026849.19	ENSMUST00000028200.9	1401	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	490	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGTGGCTTTGTGTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	30857945	30850638	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_30851210_30853486_30853615_30853705_30853882_30857101_30857368_30857685
ENSMUST00000028209.15	chr2	+	2251	8	FSM	ENSMUSG00000026856.15	ENSMUST00000028209.15	2251	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGAGCATACATTACTTG	NA	NA	NA	NA	NA	NA	NA	NA	30282265	30290541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287030_30287160_30287479_30287570_30289153
ENSMUST00000028214.15	chr2	-	1810	11	FSM	ENSMUSG00000026860.17	ENSMUST00000028214.15	1810	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGATCTCAGTCCATGAG	NA	NA	NA	NA	NA	NA	NA	NA	30249328	30234820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUST00000028238.15	chr2	-	3081	8	FSM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1455	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGCATTATTTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	35091132	35070216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
ENSMUST00000028250.9	chr2	+	1584	7	FSM	ENSMUSG00000026887.10	ENSMUST00000028250.9	2623	7	9	1030	9	460	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCCCAGAACTTGTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	36026409	36079629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_36026712_36031457_36031670_36037914_36038071_36043604_36043724_36049610_36049703_36067126_36067287_36079086
ENSMUST00000028251.10	chr2	-	912	6	FSM	ENSMUSG00000026889.13	ENSMUST00000028251.10	2617	6	158	1547	-4	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAAATAGGAATGTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	36026627	36007637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_36007987_36010824_36010911_36012863_36012951_36017136_36017264_36024146_36024276_36026493
ENSMUST00000028252.14	chr2	-	1986	14	FSM	ENSMUSG00000026888.15	ENSMUST00000028252.14	1986	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCGTGTTCTTGTGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	64853126	64742819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_64743198_64745059_64745154_64747172_64747261_64747378_64747452_64747542_64747660_64753880_64753962_64760243_64760340_64760529_64760641_64763563_64763702_64766760_64766836_64768712_64768835_64783905_64784063_64851430_64851564_64852803
ENSMUST00000028278.14	chr2	+	1541	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1487	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	61542037	61630720	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
ENSMUST00000028293.12	chr2	-	2031	9	FSM	ENSMUSG00000026927.18	ENSMUST00000028293.12	2031	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGACTGTCTTGTCATTT	NA	NA	NA	NA	NA	NA	NA	NA	26279316	26272813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278503_26278573_26279160
ENSMUST00000028307.9	chr2	-	1374	10	FSM	ENSMUSG00000026938.11	ENSMUST00000028307.9	1374	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGATCACTGTGAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	25518042	25514677	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_25515101_25515224_25515360_25515445_25515576_25516023_25516152_25516267_25516304_25516652_25516689_25516978_25517015_25517289_25517344_25517447_25517562_25517760
ENSMUST00000028308.11	chr2	-	769	5	NNC	ENSMUSG00000026939.13	novel	795	5	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTTCTGTGGGTGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	25511997	25510078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_-_25510543_25511077_25511180_25511386_25511471_25511619_25511687_25511945
ENSMUST00000028329.13	chr2	+	3121	7	FSM	ENSMUSG00000026955.14	ENSMUST00000028329.13	3121	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTAGGCCCTATTTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	25262332	25268225	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_25263011_25263427_25263530_25264963_25265077_25265696_25265844_25265979_25266088_25266175_25266287_25266363
ENSMUST00000028356.9	chr2	-	1257	5	FSM	ENSMUSG00000060703.13	ENSMUST00000028356.9	1257	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGCCTGGTCTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	60114762	60082336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_60082836_60087376_60087548_60088226_60088344_60102445_60102557_60114403
ENSMUST00000028382.13	chr2	+	1559	9	FSM	ENSMUSG00000026999.15	ENSMUST00000028382.13	1559	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	632	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACATTTGTTTGGAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	80469159	80489246	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488664
ENSMUST00000028384.5	chr2	+	1632	4	FSM	ENSMUSG00000027001.11	ENSMUST00000028384.5	1632	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGCTTCAAGTGATTGT	NA	NA	NA	NA	NA	NA	NA	NA	80447388	80462005	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_80447951_80451537_80451585_80454551_80454705_80461135
ENSMUST00000028398.14-1	chr2	+	1485	6	FSM	ENSMUSG00000027011.15	ENSMUST00000028398.14	2249	6	0	764	0	-54	multi-exon	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGAGAGCACTGATGTAT	NA	NA	NA	NA	NA	NA	NA	NA	78699390	78750873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_78699750_78700800_78701023_78702765_78702817_78744017_78744151_78749030_78749179_78750301
ENSMUST00000028408.3	chr2	+	1273	11	FSM	ENSMUSG00000027018.12	ENSMUST00000028408.3	1576	11	0	303	0	-303	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGCTCAAGAGTGAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	71219603	71271663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
ENSMUST00000028470.10	chr2	+	590	3	FSM	ENSMUSG00000027076.11	ENSMUST00000028470.10	690	3	0	100	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTAGAGCTCTCCTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	84657340	84660457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_84657492_84657942_84658058_84660133
ENSMUST00000028475.9	chr2	-	1912	3	FSM	ENSMUSG00000027079.16	ENSMUST00000028475.9	1912	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	333	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTATGATTCTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	84557694	84553465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_84554562_84555872_84556501_84557506
ENSMUST00000028494.9	chr2	+	935	4	FSM	ENSMUSG00000027088.11	ENSMUST00000028494.9	2260	4	24	1301	10	-1300	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTCTTGCACTAGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	69620003	69626266	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_69620301_69620629_69620666_69622680_69622836_69625819
ENSMUST00000028509.11	chr2	+	1755	10	FSM	ENSMUSG00000014959.13	ENSMUST00000028509.11	2238	10	14	469	0	-451	multi-exon	FALSE	canonical	NA	NA	NA	NA	584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAGAGAGATGGCGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	70491933	70521618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526_70519647_70521001
ENSMUST00000028511.8	chr2	+	1163	10	FSM	ENSMUSG00000027099.10	ENSMUST00000028511.8	2950	10	27	1760	27	-1760	multi-exon	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTAAATTCTATATCTTG	NA	NA	NA	NA	NA	NA	NA	NA	74656173	74707015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_74656388_74677581_74677630_74678642_74678690_74689748_74689822_74697214_74697292_74698663_74698757_74699226_74699266_74699647_74699774_74700751_74700829_74706646
ENSMUST00000028552.4	chr2	+	1267	10	FSM	ENSMUSG00000027132.4	ENSMUST00000028552.4	2886	10	15	1604	15	-1604	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACTATGAAGACTGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	112209570	112242981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112242727
ENSMUST00000028553.4	chr2	+	1109	2	FSM	ENSMUSG00000027133.4	ENSMUST00000028553.4	1109	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	486	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTCTGGTAGGAGATAT	NA	NA	NA	NA	NA	NA	NA	NA	112092270	112093614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_112092423_112092657
ENSMUST00000028554.4	chr2	+	2275	14	FSM	ENSMUSG00000027134.5	ENSMUST00000028554.4	2275	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCAGAGGGTGGAATCATT	NA	NA	NA	NA	NA	NA	NA	NA	112069812	112077456	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_112070403_112071795_112071939_112072269_112072491_112072820_112072934_112073045_112073107_112073348_112073408_112073603_112073639_112074185_112074241_112074327_112074411_112074664_112074791_112075007_112075141_112076140_112076240_112076619_112076777_112077056
ENSMUST00000028583.8	chr2	+	1100	5	FSM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	17	3111	17	-3111	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCCTTTTGTACTTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	109721214	109728237	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580_109726791_109727590
ENSMUST00000028584.8	chr2	+	808	6	FSM	ENSMUSG00000027163.14	ENSMUST00000028584.8	1191	6	10	373	10	194	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTACCGCCAGCCGTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	101716607	101731618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_101716665_101725479_101725606_101727384_101727525_101729212_101729248_101730213_101730318_101731272
ENSMUST00000028603.10	chr2	+	1438	11	FSM	ENSMUSG00000027180.13	ENSMUST00000028603.10	4740	11	139	3163	0	2554	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTAGCTGCTGCTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	103858204	103890422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103890226
ENSMUST00000028610.10	chr2	-	2613	13	FSM	ENSMUSG00000027187.11	ENSMUST00000028610.10	2613	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	311	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTGACTTTGGAGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	103315505	103284193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
ENSMUST00000028619.5	chr2	-	1902	11	FSM	ENSMUSG00000027195.11	ENSMUST00000028619.5	1902	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	464	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATTTTTGATAGTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	93988309	93863033	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
ENSMUST00000028644.11	chr2	-	1824	10	FSM	ENSMUSG00000027215.14	ENSMUST00000028644.11	1824	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTCTGAAGAGGCGGTA	NA	NA	NA	NA	NA	NA	NA	NA	93292847	93249455	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93273713_93273790_93292674
ENSMUST00000028648.3	chr2	+	1111	6	FSM	ENSMUSG00000027220.3	ENSMUST00000028648.3	3761	6	0	2650	0	-2650	multi-exon	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAACAGACAAAACGGG	NA	NA	NA	NA	NA	NA	NA	NA	92745442	92783753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_92745715_92771097_92771324_92773396_92773532_92776258_92776561_92781646_92781777_92783707
ENSMUST00000028650.9	chr2	+	1392	11	FSM	ENSMUSG00000027222.15	ENSMUST00000028650.9	1392	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGGCTCTGTGTCATC	NA	NA	NA	NA	NA	NA	NA	NA	92205650	92211562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_92206021_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
ENSMUST00000028721.8	chr2	-	2613	13	FSM	ENSMUSG00000053675.9	ENSMUST00000028721.8	2613	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGTATGGATTTTAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	120916322	120876591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_120877014_120877161_120877296_120878853_120879015_120879308_120879675_120882895_120883136_120883219_120883324_120883975_120884115_120901212_120901391_120901968_120902098_120905583_120905703_120907270_120907517_120907969_120908165_120916142
ENSMUST00000028730.13	chr2	-	2935	6	FSM	ENSMUSG00000027274.17	ENSMUST00000028730.13	2935	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTATACAATCCTTACTA	NA	NA	NA	NA	NA	NA	NA	NA	136733302	136715699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136733198
ENSMUST00000028752.8	chr2	-	4339	25	FSM	ENSMUSG00000027291.16	ENSMUST00000028752.8	4339	25	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCTTGAGCCTCCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	120183606	120146941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_120148591_120149946_120150039_120151132_120151268_120151367_120151518_120152090_120152137_120152338_120152442_120153513_120153643_120154063_120154182_120154671_120154771_120155111_120155186_120155666_120155754_120155866_120156009_120156486_120156631_120159053_120159197_120163870_120164001_120168946_120169068_120169161_120169283_120169799_120169984_120172464_120172558_120173673_120173773_120174605_120174701_120176098_120176142_120176808_120176874_120180644_120180711_120183395
ENSMUST00000028780.4	chr2	+	1003	3	FSM	ENSMUSG00000027313.4	ENSMUST00000028780.4	1637	3	0	634	0	141	multi-exon	FALSE	canonical	NA	NA	NA	NA	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTTCATTGACCCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	119181709	119184228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_119182118_119182837_119182874_119183669
ENSMUST00000028787.12	chr2	-	909	6	FSM	ENSMUSG00000027316.16	ENSMUST00000028787.12	909	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCATGTCTCCCGATGAC	NA	NA	NA	NA	NA	NA	NA	NA	130884602	130882095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_130882246_130882318_130882396_130882935_130883071_130883151_130883262_130883314_130883679_130884529
ENSMUST00000028795.10	chr2	+	1152	10	FSM	ENSMUSG00000027323.11	ENSMUST00000028795.10	3368	10	0	2216	0	-243	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACCAGAATCTGCAAAATC	NA	NA	NA	NA	NA	NA	NA	NA	118943287	118965555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
ENSMUST00000028796.2	chr2	+	1013	3	FSM	ENSMUSG00000027324.2	ENSMUST00000028796.2	2706	3	0	1693	0	-733	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGACAAGGAGGTAATT	NA	NA	NA	NA	NA	NA	NA	NA	118865270	118868557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_118865950_118867398_118867696_118868520
ENSMUST00000028800.12	chr2	-	832	6	FSM	ENSMUSG00000027327.17	ENSMUST00000028800.12	832	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCTGTGTGACGGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	131002001	130988723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995504_130995631_131001872
ENSMUST00000028807.6	chr2	+	2828	12	FSM	ENSMUSG00000027332.12	ENSMUST00000028807.6	3665	12	74	763	74	-763	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCAACCTTGGGCCGTCA	NA	NA	NA	NA	NA	NA	NA	NA	118692508	118712627	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708141_118708247_118708355_118708429_118710933
ENSMUST00000028816.9	chr2	-	1612	4	FSM	ENSMUSG00000027341.11	ENSMUST00000028816.9	1612	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	NA	NA	NA	NA	NA	NA	NA	NA	132089727	132081411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089492
ENSMUST00000028825.5	chr2	+	1046	8	FSM	ENSMUSG00000027349.6	ENSMUST00000028825.5	1861	8	0	815	0	-815	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGTGGTGGTAGAGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	117080219	117101206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_117080320_117088114_117088261_117089701_117089837_117090655_117090835_117093319_117093401_117094303_117094421_117098260_117098429_117101086
ENSMUST00000028846.7	chr2	+	887	4	FSM	ENSMUSG00000027368.7	ENSMUST00000028846.7	1617	4	0	730	0	-730	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTGCCTGGCATACCTG	NA	NA	NA	NA	NA	NA	NA	NA	127178078	127179566	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_127178558_127178696_127178819_127179168_127179389_127179500
ENSMUST00000028848.4	chr2	-	1211	8	FSM	ENSMUSG00000027371.11	ENSMUST00000028848.4	1211	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGCTTCCACTGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	127286470	127278134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_127278327_127278465_127278554_127278656_127278766_127280032_127280193_127280429_127280490_127282305_127282523_127283793_127284045_127286336
ENSMUST00000028892.11	chr2	-	1616	12	FSM	ENSMUSG00000027406.14	ENSMUST00000028892.11	1616	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTGTGTTTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	130126467	130121228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
ENSMUST00000028914.9	chr2	+	1858	9	FSM	ENSMUSG00000027427.14	ENSMUST00000028914.9	4403	9	30	2515	0	-2515	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAACATTGCCCTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	144369667	144381400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_144369846_144370622_144370741_144374273_144374342_144375077_144375146_144376218_144376332_144377860_144378005_144378202_144378311_144379085_144379278_144380531
ENSMUST00000028935.4	chr2	+	687	3	FSM	ENSMUSG00000027445.4	ENSMUST00000028935.4	687	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTTTGTGTATAATTTTA	NA	NA	NA	NA	NA	NA	NA	NA	148677066	148680658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_148677353_148678593_148678708_148680371
ENSMUST00000028938.7	chr2	-	860	3	FSM	ENSMUSG00000027447.7	ENSMUST00000028938.7	860	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5360	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTGAGTTGTTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	148717496	148713641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_148713964_148714736_148714851_148717072
ENSMUST00000028955.6	chr2	+	1847	9	FSM	ENSMUSG00000027460.8	ENSMUST00000028955.6	2335	9	0	488	0	-488	multi-exon	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCACCTGCCTCTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	151753129	151786769	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_151753588_151767306_151767463_151768983_151769106_151771299_151771539_151776326_151776443_151778586_151778689_151780824_151780992_151785223_151785355_151786413
ENSMUST00000028964.14	chr2	-	2252	13	FSM	ENSMUSG00000027466.16	ENSMUST00000028964.14	2252	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	152174573	152158253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953_152174043_152174415
ENSMUST00000028972.9	chr2	-	1273	5	FSM	ENSMUSG00000027472.15	ENSMUST00000028972.9	1273	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGTTGTCACCCACC	NA	NA	NA	NA	NA	NA	NA	NA	152857347	152850809	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_152851657_152852177_152852259_152854300_152854376_152855929_152856006_152857153
ENSMUST00000028981.9	chr2	+	2543	7	FSM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	0	4793	0	-4793	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTACTTTAAACAGTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	153583193	153610437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
ENSMUST00000028990.10	chr2	-	1970	14	FSM	ENSMUSG00000027487.12	ENSMUST00000028990.10	1970	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCTTCCTTGTCTACTT	NA	NA	NA	NA	NA	NA	NA	NA	154214639	154177305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214600
ENSMUST00000028995.5	chr2	+	1911	3	FSM	ENSMUSG00000027495.5	ENSMUST00000028995.5	3617	3	0	1706	0	-1706	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCTTTCTTACAGAACATA	NA	NA	NA	NA	NA	NA	NA	NA	172187484	172195963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_172187768_172193374_172193545_172194505
ENSMUST00000028997.8	chr2	-	1905	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109139.8	1905	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGAGTACGTGGGTAATC	NA	NA	NA	NA	NA	NA	NA	NA	172212426	172198115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212314
ENSMUST00000028999.12	chr3	+	1902	3	FSM	ENSMUSG00000027499.13	ENSMUST00000028999.12	3617	3	0	1715	0	1238	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCTCATTTAGTCCCCAA	NA	NA	NA	NA	NA	NA	NA	NA	7431729	7508711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_7431813_7502397_7502576_7507070
ENSMUST00000029002.9	chr3	+	697	5	FSM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	155	1221	155	-1221	multi-exon	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATGCGATATCAGTATGG	NA	NA	NA	NA	NA	NA	NA	NA	8574574	8625445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325
ENSMUST00000029005.4	chr2	+	2173	9	FSM	ENSMUSG00000027502.12	ENSMUST00000029005.4	2173	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	687	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGGGTTGGTTTTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	172282475	172311828	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096_172305211_172308193_172308252_172308348_172308445_172310515
ENSMUST00000029014.16	chr2	+	1768	4	FSM	ENSMUSG00000027510.18	ENSMUST00000029014.16	1768	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAAAGGTGGTTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	172863694	172876518	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_172864064_172864584_172864709_172865119_172865175_172875298
ENSMUST00000029053.8	chr2	+	1676	9	FSM	ENSMUSG00000027540.14	ENSMUST00000029053.8	4213	9	68	2469	68	-2469	multi-exon	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAATTACAACA	NA	NA	NA	NA	NA	NA	NA	NA	167774314	167818836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_167774477_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228_167817450_167818344
ENSMUST00000029071.9	chr3	+	2299	7	FSM	ENSMUSG00000027555.9	ENSMUST00000029071.9	2299	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCTTTTGGAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	14706786	14728062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_14706906_14710096_14710295_14715718_14715838_14719943_14720040_14721288_14721352_14721968_14722125_14726514
ENSMUST00000029076.6	chr3	+	860	7	FSM	ENSMUSG00000027559.6	ENSMUST00000029076.6	1679	7	0	819	0	-819	multi-exon	FALSE	canonical	NA	NA	NA	NA	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTGCTTGTCTCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	14928597	14936764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_14928666_14929309_14929508_14931862_14931982_14933408_14933502_14934294_14934358_14935101_14935258_14936601
ENSMUST00000029078.9	chr3	+	1788	7	FSM	ENSMUSG00000027562.13	ENSMUST00000029078.9	1788	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	260	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGTGCCTGATTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	14951487	14965830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_14951847_14952893_14953092_14960081_14960201_14960594_14960688_14961759_14961823_14962973_14963130_14965030
ENSMUST00000029082.9	chr2	-	914	7	FSM	ENSMUSG00000027566.16	ENSMUST00000029082.9	914	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	179684226	179678166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
ENSMUST00000029085.9	chr2	+	1510	5	FSM	ENSMUSG00000027569.16	ENSMUST00000029085.9	1510	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACTAAAAAAAAAAAAAACCT	NA	NA	NA	NA	NA	NA	NA	NA	180224504	180228080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_180224749_180225193_180225316_180226198_180226281_180226589_180226665_180227093
ENSMUST00000029090.9	chr2	+	1239	5	FSM	ENSMUSG00000027573.12	ENSMUST00000029090.9	1655	5	0	416	0	-413	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGCAGACAGACATGAACAT	NA	NA	NA	NA	NA	NA	NA	NA	180351909	180360110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_180352144_180354983_180355114_180356482_180356680_180358651_180358850_180359630
ENSMUST00000029105.12	chr2	+	2293	7	FSM	ENSMUSG00000027582.17	ENSMUST00000029105.12	2293	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAGACTCAGCTGGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	181006720	181022587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_181007170_181007437_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167
ENSMUST00000029120.14	chr2	+	1802	10	FSM	ENSMUSG00000027593.16	ENSMUST00000029120.14	1802	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCTGAGGTGGAATGG	NA	NA	NA	NA	NA	NA	NA	NA	154633052	154709164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_154633469_154662926_154663010_154699188_154699454_154701597_154701671_154701830_154701879_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ENSMUST00000029124.8	chr1	+	1299	1	FSM	ENSMUSG00000048538.8	ENSMUST00000029124.8	1299	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	603	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGGGCTGTCCTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	7247962	7249261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_7248000_7249300
ENSMUST00000029131.11	chr2	-	2614	15	FSM	ENSMUSG00000027603.16	ENSMUST00000029131.11	2614	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCTTGATTTCTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	155356768	155332298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_155333037_155335528_155335629_155336765_155336904_155337561_155337680_155337793_155337944_155340682_155340772_155340933_155341062_155342622_155342711_155344555_155344753_155345047_155345122_155345331_155345400_155346623_155346742_155347874_155348027_155348245_155348482_155356548
ENSMUST00000029140.12	chr2	+	1597	4	FSM	ENSMUSG00000027611.13	ENSMUST00000029140.12	1597	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCCATACCCTTTGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	155593036	155597391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_155593385_155595264_155595523_155596159_155596448_155596688
ENSMUST00000029142.15	chr2	-	1500	6	FSM	ENSMUSG00000027613.16	ENSMUST00000029142.15	1500	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	2764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTGCTGTGTGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	155668845	155661751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_155662032_155664756_155664939_155665111_155665289_155665784_155665961_155668044_155668131_155668246
ENSMUST00000029147.16	chr2	-	2051	13	FSM	ENSMUSG00000027618.18	ENSMUST00000029147.16	2051	13	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTGAATTTTTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	155986106	155965558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939
ENSMUST00000029180.14	chr2	+	1544	7	FSM	ENSMUSG00000027651.17	ENSMUST00000029180.14	4283	7	0	2739	0	-2739	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCCCAATGAGGACTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	157870640	157917388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889835_157889949_157892006_157892134_157900571_157900748_157916849
ENSMUST00000029188.8	chr2	+	1719	5	FSM	ENSMUSG00000027656.8	ENSMUST00000029188.8	1719	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGTTTTGTATCTTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	163662808	163675066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_163663030_163663208_163663302_163667060_163667278_163670771_163671030_163674136
ENSMUST00000029256.9	chr3	+	832	8	FSM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	461	2674	3	-1161	multi-exon	FALSE	canonical	NA	NA	NA	NA	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGACTCCTTCAGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	30847484	30872738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648
ENSMUST00000029266.14	chr3	-	1731	13	FSM	ENSMUSG00000027712.14	ENSMUST00000029266.14	1731	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTAGGTTTGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	36530043	36503071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_36503556_36504460_36504584_36504786_36504846_36506335_36506432_36507619_36507714_36511141_36511199_36511607_36511688_36514591_36514683_36516029_36516144_36518116_36518212_36519399_36519485_36529578_36529610_36529721
ENSMUST00000029316.16	chr3	-	1300	11	FSM	ENSMUSG00000027752.16	ENSMUST00000029316.16	1300	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGTCCTTACGTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	54642814	54636098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUST00000029385.9	chr3	-	557	3	FSM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	52	4002	52	-4002	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGAGATCTTTCCATTCT	NA	NA	NA	NA	NA	NA	NA	NA	58433261	58431239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_58431290_58432503_58432580_58432830
ENSMUST00000029387.15	chr3	+	2299	14	FSM	ENSMUSG00000027810.15	ENSMUST00000029387.15	2299	14	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	315	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	58433241	58464922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
ENSMUST00000029388.10	chr3	+	1970	2	FSM	ENSMUSG00000027811.10	ENSMUST00000029388.10	1970	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	371	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGTTTCTTTAGACTCA	NA	NA	NA	NA	NA	NA	NA	NA	79536385	79540127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_79536664_79538435
ENSMUST00000029402.15	chr3	-	3150	6	FSM	ENSMUSG00000027822.17	ENSMUST00000029402.15	3150	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAAAGCTGTTTTTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	63872189	63849750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_63850838_63851986_63852203_63854989_63855108_63855492_63855678_63861234_63861426_63870836
ENSMUST00000029422.14	chr3	-	754	5	FSM	ENSMUSG00000027833.17	ENSMUST00000029422.14	3079	5	370	1955	-260	-478	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGCCGCCAAGACCACCAG	NA	NA	NA	NA	NA	NA	NA	NA	66888734	66881069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_66881277_66882776_66882866_66883185_66883244_66885518_66885728_66888543
ENSMUST00000029445.13	chr3	+	1323	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	63	3084	-19	431	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTGGAATAGATGTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	102965663	102972146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
ENSMUST00000029447.12	chr3	+	665	5	FSM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	87	6623	0	-358	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCGTCAGAGCGAGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	102903110	102909152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_102903284_102903471_102903578_102904558_102904702_102905805_102905920_102909023
ENSMUST00000029476.9	chr3	+	1451	5	FSM	ENSMUSG00000027879.10	ENSMUST00000029476.9	2810	5	37	1322	0	-1322	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTGTTTGGTTAGTT	NA	NA	NA	NA	NA	NA	NA	NA	97808542	97829270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_97808737_97814536_97814647_97819894_97820056_97821815_97821963_97828431
ENSMUST00000029477.11	chr3	+	3431	10	FSM	ENSMUSG00000040322.11	ENSMUST00000029477.11	3431	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	410	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTTTTCTAATTGTC	NA	NA	NA	NA	NA	NA	NA	NA	109030464	109075773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_109030704_109043527_109043655_109056798_109056887_109062309_109062422_109064162_109064322_109065813_109065961_109066663_109066772_109068532_109068701_109070734_109070886_109073641
ENSMUST00000029480.9	chr3	-	3026	6	FSM	ENSMUSG00000027881.15	ENSMUST00000029480.9	3026	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTGGGTGTTGGTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	108819043	108810122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108818479
ENSMUST00000029515.5	chr3	+	297	3	FSM	ENSMUSG00000027907.5	ENSMUST00000029515.5	511	3	0	214	0	-214	multi-exon	FALSE	canonical	NA	NA	NA	NA	879	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAACCTCATTGGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	93427794	93433380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_93427861_93431357_93431507_93433298
ENSMUST00000029542.12	chr3	-	4337	30	FSM	ENSMUSG00000027933.12	ENSMUST00000029542.12	4337	30	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGCCTGAGTTGACAT	NA	NA	NA	NA	NA	NA	NA	NA	90340836	90298702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_90299413_90299518_90299676_90299834_90299908_90300097_90300199_90300402_90300571_90301052_90301102_90301380_90301495_90301629_90301706_90302444_90302514_90303684_90303839_90307610_90307731_90307901_90307947_90308374_90308479_90308711_90308767_90309149_90309280_90309614_90309735_90310385_90310493_90310812_90310905_90311291_90311372_90311820_90311909_90313480_90313673_90315808_90315907_90317304_90317435_90318507_90318653_90320836_90320904_90322464_90322550_90322799_90322914_90329042_90329127_90331310_90331395_90340110
ENSMUST00000029552.13	chr3	+	1080	6	FSM	ENSMUSG00000027942.18	ENSMUST00000029552.13	1080	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	89960143	89966404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048
ENSMUST00000029564.12	chr3	+	538	5	FSM	ENSMUSG00000027952.17	ENSMUST00000029564.12	1194	5	213	443	0	-434	multi-exon	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTGAGAACCACGGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	89366637	89375877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89375820
ENSMUST00000029565.11	chr3	-	1022	6	FSM	ENSMUSG00000027953.14	ENSMUST00000029565.11	1022	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	89177877	89175552	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177258_89177368_89177447_89177692
ENSMUST00000029566.9	chr3	-	1480	5	FSM	ENSMUSG00000027954.10	ENSMUST00000029566.9	1480	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTCTGCCCCACCATG	NA	NA	NA	NA	NA	NA	NA	NA	89186952	89179039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_89179912_89180078_89180130_89180263_89180330_89183436_89183733_89186757
ENSMUST00000029575.12	chr3	+	3000	5	FSM	ENSMUSG00000027963.15	ENSMUST00000029575.12	3000	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGTGCTCTGGTGACGTG	NA	NA	NA	NA	NA	NA	NA	NA	115801110	115822666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_115801532_115804270_115804346_115817655_115818084_115818973_115819045_115820661
ENSMUST00000029588.10	chr3	-	2121	13	FSM	ENSMUSG00000027968.12	ENSMUST00000029588.10	2121	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGGTTTTATTTACA	NA	NA	NA	NA	NA	NA	NA	NA	127346998	127330362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
ENSMUST00000029610.9	chr3	-	1789	8	FSM	ENSMUSG00000027984.9	ENSMUST00000029610.9	1789	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	841	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGCCTGTCTTCTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	131065750	131027067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
ENSMUST00000029625.8	chr3	+	2003	3	FSM	ENSMUSG00000027996.14	ENSMUST00000029625.8	2003	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	409	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTTCTGTCATGTCT	NA	NA	NA	NA	NA	NA	NA	NA	83673627	83681623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_83674351_83676632_83676714_83680424
ENSMUST00000029626.9	chr3	+	807	7	FSM	ENSMUSG00000027997.10	ENSMUST00000029626.9	1456	7	33	616	33	-616	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGATGCAATCGGCAAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	129695106	129707136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_129695156_129699114_129699157_129699551_129699702_129700049_129700127_129704171_129704348_129705766_129705924_129706980
ENSMUST00000029628.11	chr3	+	1749	15	NNC	ENSMUSG00000027998.12	novel	1851	15	NA	NA	10	-66	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTGTGTTTTATTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	82962838	82979596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977929_82978044_82978496_82978691_82979417
ENSMUST00000029629.15	chr3	+	675	4	FSM	ENSMUSG00000027999.16	ENSMUST00000029629.15	1561	4	0	886	0	-18	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAACAGATCTATAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	129672254	129688588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_129672585_129682529_129682607_129683916_129684083_129688486
ENSMUST00000029643.15	chr3	-	1271	7	FSM	ENSMUSG00000028010.17	ENSMUST00000029643.15	1271	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTTATTGAACGGAACCTA	NA	NA	NA	NA	NA	NA	NA	NA	129625045	129618560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624766
ENSMUST00000029649.3	chr3	+	1504	8	FSM	ENSMUSG00000028015.4	ENSMUST00000029649.3	3468	8	42	1922	42	-1922	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAAATGGAACTTACTCTA	NA	NA	NA	NA	NA	NA	NA	NA	81839949	81862110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_81840083_81848838_81848945_81849499_81849640_81852168_81852337_81853620_81853743_81858679_81858844_81859505_81859599_81861532
ENSMUST00000029650.9	chr3	+	3101	7	FSM	ENSMUSG00000028016.10	ENSMUST00000029650.9	3101	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCTGTAGATGTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	132797600	132816749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_132797738_132802508_132802674_132804170_132804324_132806383_132806569_132808117_132808278_132812699_132812847_132814595
ENSMUST00000029652.4	chr3	+	1631	6	FSM	ENSMUSG00000028019.10	ENSMUST00000029652.4	3521	6	1008	882	452	-873	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCGCAATTTGGAGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	80944730	81120465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_80944862_81048711_81048908_81082122_81082304_81111541_81111750_81116350_81116569_81119768
ENSMUST00000029665.7	chr3	+	1539	4	FSM	ENSMUSG00000028031.7	ENSMUST00000029665.7	3705	4	0	2166	0	-2166	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTAGCAGACTGTGAATT	NA	NA	NA	NA	NA	NA	NA	NA	131791052	131883899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_131792016_131879544_131879696_131880729_131880886_131883630
ENSMUST00000029674.8	chr3	-	1296	4	FSM	ENSMUSG00000028040.8	ENSMUST00000029674.8	1599	4	154	149	154	-149	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAATCCCTGGAACCCACA	NA	NA	NA	NA	NA	NA	NA	NA	89245181	89240845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_89241740_89242088_89242158_89242483_89242780_89245144
ENSMUST00000029679.4	chr3	-	849	3	FSM	ENSMUSG00000028044.7	ENSMUST00000029679.4	849	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2037	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGTGGTTATAAGACTGT	NA	NA	NA	NA	NA	NA	NA	NA	89325690	89322778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_89323271_89323580_89323709_89325461
ENSMUST00000029692.15	chr3	+	652	6	FSM	ENSMUSG00000028057.15	ENSMUST00000029692.15	1204	6	56	496	-12	-325	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAGAGAAGGAGCTAGT	NA	NA	NA	NA	NA	NA	NA	NA	88624200	88636538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_88624265_88624632_88624778_88624908_88624966_88633301_88633376_88633586_88633779_88636418
ENSMUST00000029698.15	chr3	-	668	4	FSM	ENSMUSG00000028062.16	ENSMUST00000029698.15	668	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	88460331	88457125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460102
ENSMUST00000029707.13	chr3	+	1630	8	FSM	ENSMUSG00000028069.17	ENSMUST00000029707.13	1630	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTCTTTGTTTTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	87950414	87963297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_87950487_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
ENSMUST00000029708.8	chr3	-	908	6	FSM	ENSMUSG00000028070.8	ENSMUST00000029708.8	908	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	1128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	NA	NA	NA	NA	NA	NA	NA	87965802	87963826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_87964084_87964292_87964441_87965030_87965145_87965227_87965339_87965436_87965546_87965633
ENSMUST00000029717.4	chr3	-	1946	6	FSM	ENSMUSG00000028076.13	ENSMUST00000029717.4	1946	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCCAGAGGTTTTACTT	NA	NA	NA	NA	NA	NA	NA	NA	86906748	86903140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_86903909_86903996_86904094_86904644_86904924_86905378_86905658_86905939_86906213_86906498
ENSMUST00000029753.14	chr3	-	1895	11	FSM	ENSMUSG00000028108.17	ENSMUST00000029753.14	1895	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTCGTTGTCTTTAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	95646879	95641459	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_95641784_95642134_95642223_95642510_95642732_95643158_95643534_95643783_95644104_95644324_95644367_95644944_95645026_95645119_95645201_95645323_95645429_95645550_95645614_95646684
ENSMUST00000029769.14	chr3	+	861	7	FSM	ENSMUSG00000028124.16	ENSMUST00000029769.14	5589	7	431	4297	320	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGGAACATAAGATACAAAT	NA	NA	NA	NA	NA	NA	NA	NA	122039636	122060084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_122039761_122049193_122049260_122052855_122052941_122055516_122055577_122056248_122056452_122058442_122058558_122059876
ENSMUST00000029786.14	chr3	+	725	7	FSM	ENSMUSG00000028140.14	ENSMUST00000029786.14	1612	7	12	875	0	-875	multi-exon	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAAGCCCAAGACGAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	94350643	94355140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94354566_94354651_94355092
ENSMUST00000029800.9	chr3	+	2004	8	FSM	ENSMUSG00000028152.11	ENSMUST00000029800.9	6653	8	110	4539	110	-308	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAAATCCACCATGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	138448065	138609127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_138448422_138574106_138574158_138596495_138596643_138600108_138600280_138602549_138602676_138603873_138603922_138604027_138604145_138608139
ENSMUST00000029803.12	chr3	+	969	8	FSM	ENSMUSG00000028156.13	ENSMUST00000029803.12	4991	8	0	4022	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCTCCCCCACCCCCAA	NA	NA	NA	NA	NA	NA	NA	NA	138231939	138261435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_138232056_138233028_138233076_138252081_138252189_138253419_138253516_138256023_138256088_138256653_138256768_138259342_138259483_138261150
ENSMUST00000029805.13	chr3	-	3963	18	FSM	ENSMUSG00000028158.15	ENSMUST00000029805.13	3963	18	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCTTTTGTCTTGGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	137837138	137795614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_137796991_137798339_137798511_137800719_137800845_137808847_137809076_137810427_137810550_137810703_137810802_137812862_137813072_137814716_137814930_137817404_137817513_137818220_137818390_137819816_137819975_137820896_137821048_137821762_137821903_137822167_137822285_137824073_137824182_137829493_137829638_137830818_137831007_137837000
ENSMUST00000029815.8	chr3	-	2527	3	FSM	ENSMUSG00000028165.10	ENSMUST00000029815.8	3361	3	521	313	3	-313	multi-exon	FALSE	canonical	NA	NA	NA	NA	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGGAAGTATTCCGAAA	NA	NA	NA	NA	NA	NA	NA	NA	135129165	135112485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_135114652_135116771_135116987_135129019
ENSMUST00000029838.11	chr3	-	1661	9	FSM	ENSMUSG00000028187.11	ENSMUST00000029838.11	1661	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	360	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCCTGTGTGAGCCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	146227184	146211710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_146212331_146212826_146212954_146213268_146213451_146213896_146213980_146217896_146218051_146218570_146218667_146223480_146223562_146225141_146225199_146226923
ENSMUST00000029839.11	chr3	-	1920	15	FSM	ENSMUSG00000028188.14	ENSMUST00000029839.11	1920	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGGACTGGCCTGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	146205508	146162957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_146163260_146168939_146169011_146171663_146171752_146173860_146173960_146175379_146175559_146181010_146181137_146181948_146182058_146186882_146186965_146187521_146187616_146192954_146193175_146193266_146193321_146194401_146194520_146195565_146195673_146199426_146199599_146205409
ENSMUST00000029842.9-1	chr3	+	1088	3	FSM	ENSMUSG00000028191.12	ENSMUST00000029842.9	1949	3	95	766	-74	284	multi-exon	FALSE	canonical	NA	NA	NA	NA	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATTTGAGAAAACAACTTG	NA	NA	NA	NA	NA	NA	NA	NA	145630111	145639345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_145630271_145636160_145636450_145638705
ENSMUST00000029845.15	chr3	+	1315	6	FSM	ENSMUSG00000028194.16	ENSMUST00000029845.15	3764	6	0	2449	0	-1438	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCGTGGAAGCCCCTCACT	NA	NA	NA	NA	NA	NA	NA	NA	145464429	145597583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_145464920_145551459_145551560_145558005_145558080_145558911_145559032_145594838_145594983_145597196
ENSMUST00000029850.15	chr3	+	2507	9	FSM	ENSMUSG00000028199.19	ENSMUST00000029850.15	2507	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTCTGTCTCGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	154302347	154328819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
ENSMUST00000029888.4	chr4	+	1734	10	FSM	ENSMUSG00000028229.12	ENSMUST00000029888.4	1734	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTTGGATTTAAGGTATT	NA	NA	NA	NA	NA	NA	NA	NA	19575206	19606932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_19575328_19580389_19580508_19586775_19586864_19588525_19588686_19595069_19595160_19599613_19599670_19601355_19601444_19602642_19602674_19605402_19605537_19606084
ENSMUST00000029908.8	chr4	+	2627	6	FSM	ENSMUSG00000028246.14	ENSMUST00000029908.8	2627	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGAGATGCGTTGGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	21931330	21994751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_21931830_21936632_21936769_21948691_21948889_21958443_21958668_21982385_21982503_21993297
ENSMUST00000029909.3	chr4	+	1550	7	FSM	ENSMUSG00000028247.3	ENSMUST00000029909.3	2651	7	0	1101	0	465	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGGAGTACAAAATATATT	NA	NA	NA	NA	NA	NA	NA	NA	21879672	21911061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_21879797_21892808_21892936_21896554_21896708_21899057_21899158_21900263_21900507_21908482_21908643_21910418
ENSMUST00000029915.6	chr4	-	1588	4	FSM	ENSMUSG00000028251.6	ENSMUST00000029915.6	1588	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCATGTATTTCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	21767212	21757381	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_21758476_21759369_21759530_21759622_21759794_21767049
ENSMUST00000029925.10	chr4	+	707	3	FSM	ENSMUSG00000028261.14	ENSMUST00000029925.10	3632	3	93	2832	93	-2832	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATGTGGCCCAAATGAGT	NA	NA	NA	NA	NA	NA	NA	NA	24898175	24902169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_24898303_24898572_24898677_24901693
ENSMUST00000029938.10	chr3	+	938	7	FSM	ENSMUSG00000028271.10	ENSMUST00000029938.10	1455	7	178	339	178	-339	multi-exon	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGATCTCTTCCCTTCAGAC	NA	NA	NA	NA	NA	NA	NA	NA	142470983	142489028	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_142471050_142477146_142477254_142483951_142484086_142485452_142485600_142485730_142485861_142487100_142487383_142488956
ENSMUST00000029970.14	chr4	-	2039	8	FSM	ENSMUSG00000028293.15	ENSMUST00000029970.14	2039	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	687	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGCAGTTACTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	34687438	34663256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34687243
ENSMUST00000029972.4	chr4	-	786	3	FSM	ENSMUSG00000028295.15	ENSMUST00000029972.4	786	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	34778423	34768663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_34769148_34771257_34771415_34778278
ENSMUST00000030015.6	chr4	-	1527	5	FSM	ENSMUSG00000028331.13	ENSMUST00000030015.6	1527	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTCTGAGCTTTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	46389437	46379863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_46380311_46382058_46382686_46386093_46386252_46387567_46387743_46389317
ENSMUST00000030018.5	chr4	+	1524	6	FSM	ENSMUSG00000028334.11	ENSMUST00000030018.5	2179	6	126	529	126	-529	multi-exon	FALSE	canonical	NA	NA	NA	NA	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTCAGACATCAGGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	46489373	46503103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500980_46502434
ENSMUST00000030018.5-1	chr4	+	1562	6	FSM	ENSMUSG00000028334.11	ENSMUST00000030018.5	2179	6	0	617	0	-617	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCAGGGACAGAGCGTTC	NA	NA	NA	NA	NA	NA	NA	NA	46489247	46503015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500980_46502434
ENSMUST00000030032.13	chr4	+	1530	10	FSM	ENSMUSG00000028347.15	ENSMUST00000123476.8	1224	10	186	-492	186	492	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTATGTGTTAGATGT	NA	NA	NA	NA	NA	NA	NA	NA	48585550	48662577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_48585642_48604580_48604691_48610412_48610543_48614956_48614984_48617234_48617332_48636839_48636989_48638979_48639046_48650294_48650419_48658773_48658933_48662000
ENSMUST00000030033.5	chr4	+	1460	2	FSM	ENSMUSG00000028348.8	ENSMUST00000030033.5	2054	2	0	594	0	-594	multi-exon	TRUE	canonical	NA	NA	NA	NA	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAGCTCTTGGCCAATGA	NA	NA	NA	NA	NA	NA	NA	NA	48663513	48672908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_48664030_48671964
ENSMUST00000030051.6	chr4	-	1051	5	FSM	ENSMUSG00000028367.6	ENSMUST00000030051.6	1051	5	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	732	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCATGAGTGTGACTGAT	NA	NA	NA	NA	NA	NA	NA	NA	57956411	57943372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_57943968_57945146_57945213_57950838_57950899_57951796_57951902_57956186
ENSMUST00000030074.8	chr4	+	1607	9	FSM	ENSMUSG00000028381.9	ENSMUST00000030074.8	4012	9	301	2104	301	-2104	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGACTGCTCTGCAGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	59189557	59220729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_59189742_59207760_59207903_59211875_59211979_59213158_59213261_59213864_59213978_59217035_59217215_59218494_59218582_59219488_59219679_59220222
ENSMUST00000030090.4	chr4	-	1206	12	FSM	ENSMUSG00000028393.11	ENSMUST00000030090.4	1206	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGCCCTCTTCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	62438155	62427405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438096
ENSMUST00000030103.9	chr4	-	741	2	FSM	ENSMUSG00000028398.9	ENSMUST00000030103.9	741	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	275	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTAGTTCTTTTAATTTT	NA	NA	NA	NA	NA	NA	NA	NA	75196542	75195590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_75196007_75196217
ENSMUST00000030118.10	chr4	+	2691	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	79	606	79	-606	multi-exon	FALSE	canonical	NA	NA	NA	NA	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACAAAGGGTTCCCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	40722558	40734358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ENSMUST00000030118.10-1	chr4	+	2696	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	0	680	0	-680	multi-exon	FALSE	canonical	NA	NA	NA	NA	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTCCCATCTCTCTACAG	NA	NA	NA	NA	NA	NA	NA	NA	40722479	40734284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ENSMUST00000030119.10	chr4	-	5250	8	FSM	ENSMUSG00000028411.16	ENSMUST00000030119.10	5250	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTAGTGTCATGCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	40703194	40682381	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695424_40697216_40697354_40703136
ENSMUST00000030122.5	chr4	+	397	4	FSM	ENSMUSG00000028415.5	ENSMUST00000030122.5	397	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAAGTGGCCCAGTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	40920051	40931395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_40920156_40924923_40924965_40929078_40929192_40931256
ENSMUST00000030125.5	chr4	-	1295	7	FSM	ENSMUSG00000028416.14	ENSMUST00000030125.5	1295	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1062	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTTGGCTCTGTGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	40948243	40936400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_40936677_40937131_40937195_40939076_40939185_40941524_40941639_40943624_40943708_40946168_40946298_40947721
ENSMUST00000030127.13	chr4	+	2862	6	FSM	ENSMUSG00000028420.14	ENSMUST00000030127.13	2862	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	286	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGGTATTCTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	53826044	53862019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_53826221_53840626_53840784_53848865_53849051_53850473_53850562_53854311_53854430_53859881
ENSMUST00000030134.9	chr4	+	1771	10	FSM	ENSMUSG00000028426.11	ENSMUST00000030134.9	3810	10	47	1992	47	-1992	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTTCTAAGCAGTAGGT	NA	NA	NA	NA	NA	NA	NA	NA	55350089	55390245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_55350428_55366776_55366859_55368044_55368125_55370203_55370473_55378233_55378290_55380988_55381117_55382479_55382616_55383586_55383715_55385409_55385602_55389883
ENSMUST00000030152.13	chr4	-	1114	7	FSM	ENSMUSG00000028441.13	ENSMUST00000030152.13	1114	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTGCTGTGTCCTTACT	NA	NA	NA	NA	NA	NA	NA	NA	41517333	41505008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_41505169_41505567_41505655_41507098_41507329_41507520_41507594_41508516_41508630_41511431_41511577_41517027
ENSMUST00000030154.7	chr4	+	845	3	FSM	ENSMUSG00000028443.7	ENSMUST00000030154.7	845	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGATGCTTTCTTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	41465150	41480926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_41465181_41477513_41477648_41480245
ENSMUST00000030158.11	chr4	-	973	7	FSM	ENSMUSG00000028447.12	ENSMUST00000030158.11	973	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACAGTGGGGCATTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	41723170	41714797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_41715260_41715395_41715456_41716395_41716455_41717356_41717441_41719836_41719924_41720782_41720868_41723034
ENSMUST00000030183.10	chr4	+	2023	11	FSM	ENSMUSG00000028463.15	ENSMUST00000030183.10	2023	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGTGTATTTGCCTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	43506965	43513729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_43507396_43508313_43508344_43508602_43508774_43508892_43509036_43509117_43509211_43510196_43510264_43511826_43511985_43512141_43512278_43512411_43512439_43512851_43512934_43513043
ENSMUST00000030184.12	chr4	-	2175	9	FSM	ENSMUSG00000028464.17	ENSMUST00000030184.12	2175	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGGCCCTTTAAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	43523464	43514710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_43516004_43518229_43518300_43518401_43518465_43519002_43519079_43519226_43519298_43519388_43519507_43519610_43519745_43522674_43522801_43523240
ENSMUST00000030185.5	chr9	-	1797	9	FSM	ENSMUSG00000032366.16	ENSMUST00000030185.5	1797	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTTGGAAGTTAGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	66956544	66936129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
ENSMUST00000030192.5	chr4	-	610	5	FSM	ENSMUSG00000028470.11	ENSMUST00000030192.5	610	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTATCCCTGTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	43656466	43654228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_43654412_43654512_43654586_43654715_43654821_43654905_43655047_43656358
ENSMUST00000030202.14	chr4	+	2320	5	FSM	ENSMUSG00000028480.15	ENSMUST00000030202.14	2320	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTCCTCTAATGCGATT	NA	NA	NA	NA	NA	NA	NA	NA	43957400	43979118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_43957774_43968111_43968221_43968571_43968676_43970499_43970578_43977462
ENSMUST00000030205.14	chr4	-	842	7	FSM	ENSMUSG00000038172.15	ENSMUST00000030205.14	842	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATGCTCTATTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	83242426	83177434	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_83177704_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
ENSMUST00000030206.10	chr4	+	1405	9	FSM	ENSMUSG00000028483.14	ENSMUST00000030206.10	1405	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGATTCTTTTCTCCAA	NA	NA	NA	NA	NA	NA	NA	NA	83335960	83371577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123_83360207_83368307_83368473_83369441_83369550_83371277
ENSMUST00000030254.15	chr4	+	1032	4	FSM	ENSMUSG00000035212.15	ENSMUST00000030254.15	1898	4	0	866	0	-866	multi-exon	FALSE	canonical	NA	NA	NA	NA	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATCACCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	101504914	101515695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_101505023_101509595_101509672_101513305_101513493_101515034
ENSMUST00000030279.15	chr4	+	3178	11	FSM	ENSMUSG00000028550.16	ENSMUST00000030279.15	3178	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACTTTTGTTTTGGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	99082170	99148024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_99082690_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
ENSMUST00000030289.9	chr4	+	3577	9	FSM	ENSMUSG00000028560.12	ENSMUST00000030289.9	3577	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGATTTTTTTTTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	98812046	98823780	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_98812481_98814691_98814912_98816470_98816592_98817100_98817206_98817930_98818092_98819096_98819786_98820422_98820594_98821060_98821263_98822306
ENSMUST00000030292.12	chr4	-	952	7	FSM	ENSMUSG00000028563.17	ENSMUST00000030292.12	952	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGACCTGTTATTAA	NA	NA	NA	NA	NA	NA	NA	NA	98271483	98243606	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263251_98268854_98268929_98271306
ENSMUST00000030296.9	chr4	+	675	7	FSM	ENSMUSG00000028567.9	ENSMUST00000030296.9	1359	7	34	650	34	-618	multi-exon	FALSE	canonical	NA	NA	NA	NA	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGCGAATCCTAAAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	108691831	108718674	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_108692054_108703147_108703209_108710365_108710419_108713344_108713419_108715121_108715192_108716471_108716556_108718563
ENSMUST00000030313.9	chr4	-	2107	6	FSM	ENSMUSG00000028578.9	ENSMUST00000030313.9	2107	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGATATCTTTTGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	94445033	94388317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_94389654_94409298_94409373_94437355_94437432_94438658_94438744_94439501_94439703_94444698
ENSMUST00000030317.14	chr4	-	1817	6	FSM	ENSMUSG00000028583.15	ENSMUST00000030317.14	1817	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3916	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGCCAACATTTGACACT	NA	NA	NA	NA	NA	NA	NA	NA	143026134	142994000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_142994997_142995757_142995870_142997092_142997132_143000469_143000627_143002640_143002778_143025758
ENSMUST00000030395.9	chr4	+	283	3	FSM	ENSMUSG00000028643.12	ENSMUST00000030395.9	733	3	101	349	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTGTAAGCAGATGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	119052603	119058146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_119052684_119053068_119053219_119058093
ENSMUST00000030399.7	chr4	+	2593	7	FSM	ENSMUSG00000028646.17	ENSMUST00000030399.7	2593	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGTTGTGTGATGTGT	NA	NA	NA	NA	NA	NA	NA	NA	123811238	123830790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_123811561_123813641_123813846_123814743_123814944_123817752_123817868_123818539_123818683_123823624_123823774_123829330
ENSMUST00000030404.5	chr4	-	1188	10	FSM	ENSMUSG00000028651.13	ENSMUST00000030404.5	1188	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTCCTGCAAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	123033744	123020907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030664_123030692_123031318_123031363_123032658_123032758_123033694
ENSMUST00000030408.12	chr4	-	2151	14	FSM	ENSMUSG00000028655.12	ENSMUST00000030408.12	2151	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGCTTCTATTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	122854981	122840642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_122841098_122842324_122842502_122842593_122842738_122843059_122843173_122843271_122843356_122843944_122844029_122844206_122844329_122844453_122844545_122844983_122845142_122845581_122845661_122845782_122845922_122850524_122850650_122853062_122853195_122854733
ENSMUST00000030412.11	chr4	+	2381	9	FSM	ENSMUSG00000028657.15	ENSMUST00000030412.11	2381	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCTGTATAATTTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	122730034	122752871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302
ENSMUST00000030412.11-0	chr4	+	2039	9	FSM	ENSMUSG00000028657.15	ENSMUST00000030412.11	2381	9	12	330	0	-330	multi-exon	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCCTAGTGCCCATGCT	NA	NA	NA	NA	NA	NA	NA	NA	122730046	122752541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302
ENSMUST00000030432.8	chr4	+	1103	9	FSM	ENSMUSG00000028672.14	ENSMUST00000030432.8	1418	9	17	298	17	-298	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGATGATAAGGGCTAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	135673775	135689630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_135673852_135677860_135677945_135679681_135679790_135681167_135681264_135682897_135683047_135686033_135686098_135687287_135687477_135688093_135688220_135689419
ENSMUST00000030434.5	chr4	+	2525	8	FSM	ENSMUSG00000028673.11	ENSMUST00000030434.5	2525	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	492	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTGTTTGTTTGTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	135648045	135667622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_135648462_135650277_135650413_135652859_135652998_135657209_135657316_135660209_135660411_135662000_135662192_135664233_135664334_135666384
ENSMUST00000030439.15	chr4	-	3029	15	FSM	ENSMUSG00000028677.20	ENSMUST00000030439.15	3029	15	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTCTGTGTTTGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	117354249	117128659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222_117146266_117153328_117153431_117156741_117156788_117164742_117164876_117346785_117347528_117353879
ENSMUST00000030452.13	chr4	+	1524	9	FSM	ENSMUSG00000028689.15	ENSMUST00000030452.13	1524	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTGTTCTCTGTAAA	NA	NA	NA	NA	NA	NA	NA	NA	116565705	116572296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_116566292_116566436_116566471_116566678_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116572036
ENSMUST00000030455.15	chr4	-	1420	9	FSM	ENSMUSG00000028692.15	ENSMUST00000030455.15	1420	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4402	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTGTGCCTGACTTA	NA	NA	NA	NA	NA	NA	NA	NA	116508877	116493706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_116493867_116494958_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
ENSMUST00000030477.4	chr4	+	2884	4	FSM	ENSMUSG00000028709.4	ENSMUST00000030477.4	2884	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGTGGGAAGTGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	115685288	115693382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_115685439_115688419_115688887_115690829_115691033_115691318
ENSMUST00000030490.13	chr4	+	5285	17	FSM	ENSMUSG00000028718.17	ENSMUST00000030490.13	5285	17	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAACTGACTTCTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	114857355	114900393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_114857545_114860044_114860130_114862069_114862178_114863878_114863992_114864332_114864521_114866467_114866716_114867260_114867345_114868990_114869078_114871270_114871422_114873368_114873485_114878671_114878787_114880678_114881615_114887065_114887235_114889839_114890069_114895534_114895728_114896264_114896516_114898370
ENSMUST00000030501.15	chr4	+	1352	9	FSM	ENSMUSG00000028729.16	ENSMUST00000030501.15	2960	9	51	1557	51	534	multi-exon	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCTTAGTGTTTGTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	118478046	118483416	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016
ENSMUST00000030535.4	chr4	-	846	4	FSM	ENSMUSG00000028755.4	ENSMUST00000030535.4	846	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTTTTTGTTCTTAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	138095303	138065838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_138066312_138070817_138070876_138078494_138078607_138095100
ENSMUST00000030536.13	chr4	-	1386	8	FSM	ENSMUSG00000028756.13	ENSMUST00000030536.13	2375	8	218	771	151	-264	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACTTAAGCCTCTGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	138053400	138041493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_138041525_138042807_138043045_138043314_138043443_138044615_138044780_138045206_138045390_138047299_138047401_138048048_138048334_138053143
ENSMUST00000030563.6	chr4	+	1551	5	FSM	ENSMUSG00000028779.17	ENSMUST00000030563.6	1551	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTCTTGACTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	130001348	130021927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
ENSMUST00000030581.10	chr4	-	2063	11	FSM	ENSMUSG00000028789.17	ENSMUST00000030581.10	2063	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTAAACCCTTCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	128856232	128825814	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_128826285_128828249_128828465_128839849_128839963_128841251_128841412_128842584_128842751_128843382_128843518_128844392_128844566_128853576_128853751_128855155_128855353_128855876_128855998_128856093
ENSMUST00000030586.15	chr4	-	879	6	FSM	ENSMUSG00000028795.16	ENSMUST00000030586.15	879	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTCGGTGCTCTCCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	129517740	129513066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_129513240_129514249_129514273_129514475_129514670_129514776_129514944_129516392_129516581_129517606
ENSMUST00000030622.3	chr4	+	696	7	FSM	ENSMUSG00000028821.9	ENSMUST00000030622.3	1369	7	4	669	4	-669	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATGATGCCGACATCGA	NA	NA	NA	NA	NA	NA	NA	NA	134658212	134664190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_134658330_134658490_134658596_134661766_134661893_134662242_134662361_134662684_134662776_134663293_134663393_134664150
ENSMUST00000030636.11	chr4	+	1060	5	FSM	ENSMUSG00000028832.12	ENSMUST00000030636.11	1060	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTCTGTTCAGGTAGT	NA	NA	NA	NA	NA	NA	NA	NA	134195630	134201154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_134195741_134197413_134197487_134197977_134198151_134200114_134200307_134200642
ENSMUST00000030642.3	chr4	+	859	6	FSM	ENSMUSG00000028837.9	ENSMUST00000030642.3	859	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGGGTTTGGCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	126571422	126603507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_126571639_126577914_126578038_126580821_126580893_126599850_126600014_126601346_126601397_126603271
ENSMUST00000030642.3-0	chr4	+	697	6	FSM	ENSMUSG00000028837.9	ENSMUST00000030642.3	859	6	74	88	74	-88	multi-exon	FALSE	canonical	NA	NA	NA	NA	1962	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGCTCATTTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	126571496	126603419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_126571639_126577914_126578038_126580821_126580893_126599850_126600014_126601346_126601397_126603271
ENSMUST00000030651.9	chr4	-	743	3	FSM	ENSMUSG00000028843.9	ENSMUST00000030651.9	743	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGTGGTGTCCGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	133856100	133854716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_133855118_133855228_133855397_133855926
ENSMUST00000030660.9	chr4	+	1336	5	FSM	ENSMUSG00000028847.9	ENSMUST00000030660.9	1336	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCCTGTTTTCCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	126156117	126169676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_126156331_126166470_126166569_126166767_126166868_126167682_126167866_126168934
ENSMUST00000030661.14	chr4	+	923	5	FSM	ENSMUSG00000028848.14	ENSMUST00000030661.14	1367	5	66	378	9	-133	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCGGAGCAGACCGCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	133311738	133318668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_133312181_133313220_133313378_133315810_133315972_133317077_133317209_133318636
ENSMUST00000030662.3	chr4	+	1476	7	FSM	ENSMUSG00000028850.3	ENSMUST00000030662.3	2004	7	0	528	0	-528	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGACCAGGGGGAGACCTT	NA	NA	NA	NA	NA	NA	NA	NA	133302055	133311026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_133302522_133305217_133305646_133307096_133307272_133307961_133308022_133309782_133309905_133310292_133310421_133310929
ENSMUST00000030687.8	chr4	+	1434	6	FSM	ENSMUSG00000028871.8	ENSMUST00000030687.8	1834	6	0	400	0	-400	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACGTCAACACACACACAC	NA	NA	NA	NA	NA	NA	NA	NA	124880222	124902492	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_124880465_124884885_124885220_124898774_124898967_124900939_124901090_124901376_124901566_124902165
ENSMUST00000030690.12	chr4	-	1264	10	FSM	ENSMUSG00000028873.17	ENSMUST00000030690.12	1264	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTGTGCTTGAGTAGA	NA	NA	NA	NA	NA	NA	NA	NA	124830666	124812903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_124813152_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
ENSMUST00000030702.14	chr4	-	2037	7	FSM	ENSMUSG00000028882.14	ENSMUST00000030702.14	2037	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTATGGTCTTGAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	132570480	132554239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_132555518_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570367
ENSMUST00000030734.5	chr4	+	1820	17	FSM	ENSMUSG00000028902.5	ENSMUST00000030734.5	1820	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	392	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTATGAATTTTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	124608568	124626253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616670_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621866_124622032_124622111_124622223_124623251_124623343_124625163_124625220_124625980
ENSMUST00000030738.8	chr4	-	1603	8	FSM	ENSMUSG00000028907.8	ENSMUST00000030738.8	1603	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	398	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATCCTTGTGTGTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	124587393	124571952	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
ENSMUST00000030747.11	chr4	+	2071	9	FSM	ENSMUSG00000028914.14	ENSMUST00000030747.11	3897	9	232	1594	232	695	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTCTTACAAAGGAGACAT	NA	NA	NA	NA	NA	NA	NA	NA	141521154	141541693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_141521298_141523745_141524146_141531131_141531167_141532672_141532850_141533140_141533231_141534425_141534574_141538849_141539030_141539517_141539628_141540905
ENSMUST00000030769.7	chr5	+	1785	13	FSM	ENSMUSG00000028932.9	ENSMUST00000030769.7	1785	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGCTTCCAGATCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	21990280	22008785	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_21990516_21991647_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
ENSMUST00000030771.12	chr5	-	2133	17	FSM	ENSMUSG00000029014.15	ENSMUST00000030771.12	2133	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTATAGTCATCATTTAA	NA	NA	NA	NA	NA	NA	NA	NA	21990249	21962264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
ENSMUST00000030773.12	chr5	-	3247	3	FSM	ENSMUSG00000028933.12	ENSMUST00000030773.12	3247	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTATATTTCATATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	25910823	25894809	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_25897827_25903248_25903331_25910675
ENSMUST00000030779.10	chr4	+	1425	9	FSM	ENSMUSG00000028937.15	ENSMUST00000030779.10	1425	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATGAAGCCTAGGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	152270662	152356304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_152270843_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
ENSMUST00000030787.9	chr5	-	1184	8	FSM	ENSMUSG00000028945.10	ENSMUST00000030787.9	1784	8	15	585	15	-585	multi-exon	FALSE	canonical	NA	NA	NA	NA	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCGGCATTAATTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	25047607	25008405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182
ENSMUST00000030800.13	chr5	-	1893	10	FSM	ENSMUSG00000028959.15	ENSMUST00000030800.13	1893	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	24650285	24646036	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
ENSMUST00000030805.14	chr4	-	908	7	FSM	ENSMUSG00000028964.15	ENSMUST00000030805.14	908	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	150994383	150981589	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994239
ENSMUST00000030811.2	chr4	+	892	4	FSM	ENSMUSG00000028967.11	ENSMUST00000030811.2	3043	4	0	2151	0	-234	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTATGCATATTTTGACA	NA	NA	NA	NA	NA	NA	NA	NA	150939529	150951193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_150939729_150949531_150949727_150949820_150949898_150950772
ENSMUST00000030839.13	chr4	+	2123	5	FSM	ENSMUSG00000028988.14	ENSMUST00000030839.13	2674	5	0	551	0	-551	multi-exon	FALSE	canonical	NA	NA	NA	NA	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGACGGTTCAAGCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	149602692	149650343	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_149602837_149624285_149624371_149630167_149630289_149630858_149630950_149648661
ENSMUST00000030842.8	chr4	+	1817	7	FSM	ENSMUSG00000028990.14	ENSMUST00000030842.8	1817	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	412	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	NA	NA	NA	NA	NA	NA	NA	149569750	149581125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
ENSMUST00000030851.7	chr5	-	1125	3	FSM	ENSMUSG00000028998.7	ENSMUST00000030851.7	1125	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATTAGTGTAGTCCTAG	NA	NA	NA	NA	NA	NA	NA	NA	24049159	24043941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_24044827_24046707_24046757_24048968
ENSMUST00000030905.9	chr4	+	760	5	FSM	ENSMUSG00000029038.10	ENSMUST00000030905.9	1472	5	335	377	0	-377	multi-exon	FALSE	canonical	NA	NA	NA	NA	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGACGAGCTGCTGCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	155789591	155817959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383_155816503_155817929
ENSMUST00000030914.4	chr4	-	1596	7	FSM	ENSMUSG00000029048.4	ENSMUST00000030914.4	1596	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCGTCTACACGAGTC	NA	NA	NA	NA	NA	NA	NA	NA	155170830	155158566	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
ENSMUST00000030940.14	chr4	+	1744	12	FSM	ENSMUSG00000029064.16	ENSMUST00000030940.14	3131	12	0	1387	0	-1385	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTCTGTGGCATTCATG	NA	NA	NA	NA	NA	NA	NA	NA	155575826	155642339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_155576038_155600087_155600137_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
ENSMUST00000030942.13	chr4	+	764	4	FSM	ENSMUSG00000029066.13	ENSMUST00000030942.13	764	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGAGTTATTTCCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	155887977	155893288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_155888200_155888289_155888401_155891364_155891443_155892935
ENSMUST00000030947.4	chr4	+	1776	10	FSM	ENSMUSG00000029070.10	ENSMUST00000030947.4	2203	10	0	427	0	-427	multi-exon	TRUE	canonical	NA	NA	NA	NA	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACACTTAAAAATTCCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	155924182	155928118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_155924348_155925234_155925256_155925362_155925666_155925901_155926004_155926118_155926590_155927013_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
ENSMUST00000030947.4-1	chr4	+	1776	10	FSM	ENSMUSG00000029070.10	ENSMUST00000030947.4	2203	10	104	323	104	-323	multi-exon	FALSE	canonical	NA	NA	NA	NA	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCTGCTGTTATAGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	155924286	155928222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_155924348_155925234_155925256_155925362_155925666_155925901_155926004_155926118_155926590_155927013_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
ENSMUST00000030968.7	chr5	+	1616	9	FSM	ENSMUSG00000029089.9	ENSMUST00000030968.7	1616	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTAGTTCTACATATAT	NA	NA	NA	NA	NA	NA	NA	NA	48529670	48546187	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48534416_48534508_48536671_48536807_48537465_48537574_48539128_48539210_48545444
ENSMUST00000030992.13	chr5	+	1683	8	FSM	ENSMUSG00000029110.14	ENSMUST00000030992.13	2895	8	10	1202	10	-1190	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGTCTACAGTGCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	34493733	34509578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_34493829_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
ENSMUST00000031005.11	chr5	-	4325	21	FSM	ENSMUSG00000029122.12	ENSMUST00000031005.11	4325	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTCTTGCCTGTTTCGG	NA	NA	NA	NA	NA	NA	NA	NA	37494238	37456514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_37457845_37458155_37458268_37458901_37458996_37460528_37460656_37464556_37464669_37466375_37466521_37467504_37467712_37468875_37469087_37470772_37470883_37471702_37471916_37473668_37473768_37475506_37475656_37476232_37476450_37477579_37477739_37479393_37479532_37481042_37481142_37482180_37482266_37483681_37483930_37485805_37485890_37490235_37490362_37493978
ENSMUST00000031008.13	chr5	+	1471	11	FSM	ENSMUSG00000029125.15	ENSMUST00000031008.13	1471	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTATTGCAGTCAGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	38196576	38294161	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_38196844_38249856_38249925_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293698
ENSMUST00000031024.14	chr5	+	189	4	FSM	ENSMUSG00000106918.4	ENSMUST00000031024.14	478	4	46	243	46	-243	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAAAAAAATCCGTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	31771328	31779745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_31771367_31771946_31771966_31773724_31773832_31779720
ENSMUST00000031034.12-1	chr5	+	1784	18	FSM	ENSMUSG00000029148.16	ENSMUST00000031034.12	2203	18	68	351	68	-345	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTTCGCGCCCATATTAT	NA	NA	NA	NA	NA	NA	NA	NA	31398275	31408559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_31398347_31401106_31401336_31401509_31401633_31401801_31401904_31402220_31402311_31402706_31402748_31403094_31403190_31404685_31404770_31405027_31405087_31405241_31405341_31406892_31407026_31407232_31407339_31407433_31407485_31407573_31407710_31407887_31407942_31408024_31408089_31408235_31408292_31408368
ENSMUST00000031034.12-2	chr5	+	1761	18	FSM	ENSMUSG00000029148.16	ENSMUST00000031034.12	2203	18	13	429	13	-423	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCAGGCCCCTAGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	31398220	31408481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_31398347_31401106_31401336_31401509_31401633_31401801_31401904_31402220_31402311_31402706_31402748_31403094_31403190_31404685_31404770_31405027_31405087_31405241_31405341_31406892_31407026_31407232_31407339_31407433_31407485_31407573_31407710_31407887_31407942_31408024_31408089_31408235_31408292_31408368
ENSMUST00000031038.11	chr5	+	941	9	FSM	ENSMUSG00000029152.14	ENSMUST00000031038.11	1523	9	40	542	0	-206	multi-exon	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCATCCAGGTGTCGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	73450174	73470870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUST00000031038.11-1	chr5	+	979	9	FSM	ENSMUSG00000029152.14	ENSMUST00000031038.11	1523	9	103	441	0	-105	multi-exon	FALSE	canonical	NA	NA	NA	NA	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTACAGACTCAGATTTT	NA	NA	NA	NA	NA	NA	NA	NA	73450237	73470971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUST00000031058.15	chr5	+	1500	7	FSM	ENSMUSG00000029166.15	ENSMUST00000031058.15	2021	7	0	521	0	382	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTTACTTACTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	30971984	31022929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_30972243_31019150_31019279_31019841_31019988_31020547_31020750_31021917_31022073_31022158_31022312_31022471
ENSMUST00000031072.14	chr5	+	2360	28	FSM	ENSMUSG00000029176.14	ENSMUST00000031072.14	3854	28	114	1380	114	-1380	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGGTGTTTGAAATGGACA	NA	NA	NA	NA	NA	NA	NA	NA	52991467	53023759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
ENSMUST00000031101.10	chr5	+	2996	11	FSM	ENSMUSG00000029199.12	ENSMUST00000031101.10	2996	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCATGGCTGTCCATATCA	NA	NA	NA	NA	NA	NA	NA	NA	65548882	65568036	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_65549017_65549677_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
ENSMUST00000031131.11	chr5	+	1177	9	FSM	ENSMUSG00000029223.13	ENSMUST00000031131.11	1177	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTATTTTCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	66833433	66844577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_66833666_66833778_66833791_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
ENSMUST00000031170.10	chr5	-	3192	19	FSM	ENSMUSG00000029253.13	ENSMUST00000031170.10	3192	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCATCTTGTCTGTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	86213442	86159882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_86160187_86161278_86161370_86164060_86164216_86166247_86166344_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86183274_86183449_86185170_86185773_86193150_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86206013_86206106_86209862_86209907_86213186
ENSMUST00000031227.11	chr5	+	2097	12	FSM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	8	562	8	-562	multi-exon	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTGGTGTTCAGGATTCT	NA	NA	NA	NA	NA	NA	NA	NA	106024441	106063122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_106024565_106026614_106026660_106034052_106034089_106034182_106034295_106036299_106036706_106038983_106039183_106044357_106044470_106053780_106053929_106054904_106055005_106058036_106058168_106059278_106059375_106062533
ENSMUST00000031243.15	chr5	+	1410	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	NA	NA	NA	NA	NA	NA	NA	104582983	104588916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUST00000031243.15-0	chr5	+	1166	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	21	223	18	-216	multi-exon	FALSE	canonical	NA	NA	NA	NA	5512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCTTCCTGTACAAGAAAT	NA	NA	NA	NA	NA	NA	NA	NA	104583004	104588693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUST00000031250.14	chr5	+	988	8	FSM	ENSMUSG00000029310.14	ENSMUST00000031250.14	1488	8	99	401	99	-401	multi-exon	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGAAGGTGAAGTGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	104194833	104212844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_104195013_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
ENSMUST00000031254.9	chr5	-	3193	10	FSM	ENSMUSG00000029312.13	ENSMUST00000031254.9	3193	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTTTAATGTCCTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	104059125	104009915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_104011058_104012067_104012270_104015358_104015519_104015710_104015880_104018394_104018507_104019896_104020041_104022068_104022256_104023606_104024156_104033772_104034157_104058981
ENSMUST00000031255.15	chr5	+	2884	13	FSM	ENSMUSG00000029314.15	ENSMUST00000031255.15	2884	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGCATTATTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	100994084	101046965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_100994228_100994520_100994815_101005007_101005075_101031055_101031327_101032183_101032259_101032825_101032916_101033791_101033886_101037968_101038085_101039508_101039565_101040166_101040253_101040937_101041067_101041298_101041379_101045582
ENSMUST00000031262.9	chr5	-	1743	7	FSM	ENSMUSG00000029319.9	ENSMUST00000031262.9	1743	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	693	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGCGACTCTTCATTACAG	NA	NA	NA	NA	NA	NA	NA	NA	100822150	100802588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_100803338_100805683_100805873_100808037_100808172_100809702_100809789_100811445_100811568_100815757_100815925_100821854
ENSMUST00000031264.12	chr5	-	744	5	FSM	ENSMUSG00000029322.13	ENSMUST00000031264.12	744	5	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTTTGTGTGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	100720111	100701590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_100701855_100704345_100704462_100707617_100707743_100710490_100710629_100720010
ENSMUST00000031268.8	chr5	+	1420	7	FSM	ENSMUSG00000029326.14	ENSMUST00000031268.8	1420	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	NA	NA	NA	NA	NA	NA	NA	100187902	100216619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657_100215801_100216154
ENSMUST00000031287.12	chr5	+	1422	7	FSM	ENSMUSG00000029344.16	ENSMUST00000239473.2	1813	7	0	391	0	-391	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTCACGCCGGGCGGGG	NA	NA	NA	NA	NA	NA	NA	NA	112424572	112462830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_112424638_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUST00000031311.10	chr5	+	3078	7	FSM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGACTTTAAAATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	88912854	88931140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_88913206_88917462_88917579_88920488_88920683_88921940_88922089_88924715_88924832_88926220_88926312_88929078
ENSMUST00000031311.10-0	chr5	+	2588	7	FSM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	0	490	0	-490	multi-exon	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAACTAGGAAATAAAATTAA	NA	NA	NA	NA	NA	NA	NA	NA	88912854	88930650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_88913206_88917462_88917579_88920488_88920683_88921940_88922089_88924715_88924832_88926220_88926312_88929078
ENSMUST00000031318.6	chr5	+	1575	4	FSM	ENSMUSG00000029371.8	ENSMUST00000031318.6	1575	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	347	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCATGTTGTCTCTGATTT	NA	NA	NA	NA	NA	NA	NA	NA	90907236	90909483	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_90907420_90907547_90907684_90907825_90907910_90908311
ENSMUST00000031325.6	chr5	+	1215	6	FSM	ENSMUSG00000029378.6	ENSMUST00000031325.6	1215	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGAGTTTGGATATCAGT	NA	NA	NA	NA	NA	NA	NA	NA	91287457	91296291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_91287734_91288756_91288985_91291347_91291550_91292192_91292355_91294496_91294606_91296053
ENSMUST00000031325.6-0	chr5	+	1017	6	FSM	ENSMUSG00000029378.6	ENSMUST00000031325.6	1215	6	0	198	0	-198	multi-exon	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGTCCTTCTTTCAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	91287457	91296093	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_91287734_91288756_91288985_91291347_91291550_91292192_91292355_91294496_91294606_91296053
ENSMUST00000031327.9	chr5	+	751	4	FSM	ENSMUSG00000029380.12	ENSMUST00000031327.9	953	4	2	200	2	-200	multi-exon	FALSE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATTTATTGAAAGTCGT	NA	NA	NA	NA	NA	NA	NA	NA	91039101	91040774	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_91039240_91039328_91039453_91039567_91039649_91040366
ENSMUST00000031331.13	chr5	+	1454	8	FSM	ENSMUSG00000029385.15	ENSMUST00000031331.13	2810	8	382	974	382	-967	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGCTGATTCCTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	93415497	93423116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_93415657_93416480_93416619_93417123_93417262_93418652_93418904_93419059_93419139_93419221_93419321_93421196_93421403_93422732
ENSMUST00000031345.15	chr5	-	1069	9	FSM	ENSMUSG00000029397.16	ENSMUST00000031345.15	1967	9	149	749	149	83	multi-exon	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTTTCATACCACTGTC	NA	NA	NA	NA	NA	NA	NA	NA	92110778	92097511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_92097724_92099679_92099801_92100799_92100827_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92105736_92105857_92110488
ENSMUST00000031349.9	chr5	+	481	2	FSM	ENSMUSG00000029402.9	ENSMUST00000031349.9	1115	2	0	634	0	-617	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCGTGGACTATGAGCTAG	NA	NA	NA	NA	NA	NA	NA	NA	124621196	124628553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_124621310_124628185
ENSMUST00000031351.11	chr5	+	1192	5	FSM	ENSMUSG00000029404.16	ENSMUST00000031351.11	1192	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	NA	NA	NA	NA	NA	NA	NA	124254161	124256259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
ENSMUST00000031351.11-0	chr5	+	1007	5	FSM	ENSMUSG00000029404.16	ENSMUST00000031351.11	1192	5	23	162	0	-11	multi-exon	FALSE	canonical	NA	NA	NA	NA	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGAGGGCTCAGCCATC	NA	NA	NA	NA	NA	NA	NA	NA	124254184	124256097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
ENSMUST00000031383.14	chr5	+	768	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	133	1476	-70	-10	multi-exon	FALSE	canonical	NA	NA	NA	NA	312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTAGTTTTATAGGCAACT	NA	NA	NA	NA	NA	NA	NA	NA	129097265	129099911	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUST00000031423.10	chr5	-	4486	20	FSM	ENSMUSG00000029467.16	ENSMUST00000031423.10	4486	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAGAGAAAAATAACTGTC	NA	NA	NA	NA	NA	NA	NA	NA	122640288	122594402	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412_122607878_122609230_122609317_122611272_122611354_122627300_122627440_122629743_122629849_122638793_122638877_122638993_122639012_122639630
ENSMUST00000031429.14	chr5	+	2057	12	FSM	ENSMUSG00000029470.16	ENSMUST00000031429.14	2702	12	36	609	-4	85	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGCTGGGGTGGGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	122845642	122867192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122862656_122862738_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
ENSMUST00000031434.8	chr5	+	1605	6	FSM	ENSMUSG00000029474.8	ENSMUST00000031434.8	4440	6	109	2726	109	-2726	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCATGACTGGGTAGTG	NA	NA	NA	NA	NA	NA	NA	NA	122988219	123006628	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_122988362_122999751_122999971_123002049_123002458_123004864_123004970_123005182_123005385_123006099
ENSMUST00000031447.12	chr5	+	1595	13	FSM	ENSMUSG00000029484.13	ENSMUST00000031447.12	1595	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGTGCTTCTGTTACTT	NA	NA	NA	NA	NA	NA	NA	NA	96941243	96993825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_96941423_96945259_96945313_96958908_96958997_96960700_96960796_96964199_96964314_96968260_96968352_96972745_96972826_96976206_96976264_96976555_96976650_96978251_96978348_96982633_96982693_96986151_96986275_96993359
ENSMUST00000031447.12-0	chr5	+	1255	13	FSM	ENSMUSG00000029484.13	ENSMUST00000031447.12	1595	13	56	284	56	-178	multi-exon	FALSE	canonical	NA	NA	NA	NA	890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGGCATCGTTCAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	96941299	96993541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_96941423_96945259_96945313_96958908_96958997_96960700_96960796_96964199_96964314_96968260_96968352_96972745_96972826_96976206_96976264_96976555_96976650_96978251_96978348_96982633_96982693_96986151_96986275_96993359
ENSMUST00000031481.13	chr5	-	1563	6	FSM	ENSMUSG00000029507.17	ENSMUST00000031481.13	1563	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	110928525	110921532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928419
ENSMUST00000031486.14	chr5	-	1457	7	FSM	ENSMUSG00000029513.15	ENSMUST00000031486.14	2089	7	224	408	224	-404	multi-exon	FALSE	canonical	NA	NA	NA	NA	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTGCAATGTTGGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	116162297	116152052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149
ENSMUST00000031489.10	chr6	+	1190	6	FSM	ENSMUSG00000029517.14	ENSMUST00000031489.10	1190	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATGGTCTCTGGTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	18866316	18879585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_18866727_18867980_18868096_18868242_18868417_18869231_18869339_18869892_18870031_18879339
ENSMUST00000031508.5	chr5	+	380	2	FSM	ENSMUSG00000029535.5	ENSMUST00000031508.5	1088	2	0	708	0	-708	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCATTCTGAAGCTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	115479283	115480920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_115479477_115480733
ENSMUST00000031513.14	chr5	+	586	4	FSM	ENSMUSG00000029538.15	ENSMUST00000031513.14	1162	4	218	358	218	-358	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGGAAGGAAGGGTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	115465453	115470781	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_115465559_115468556_115468718_115470175_115470349_115470634
ENSMUST00000031531.14	chr5	-	883	3	FSM	ENSMUSG00000029551.14	ENSMUST00000031531.14	883	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGAGACATCATGGGCAT	NA	NA	NA	NA	NA	NA	NA	NA	139812640	139809346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_139809829_139811882_139812120_139812476
ENSMUST00000031536.8	chr5	-	807	3	FSM	ENSMUSG00000029557.8	ENSMUST00000031536.8	1443	3	0	636	0	-636	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAGGAGCGTGGATTCAAG	NA	NA	NA	NA	NA	NA	NA	NA	140317653	140314064	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_140314536_140316734_140317025_140317607
ENSMUST00000031538.9	chr5	+	1833	6	FSM	ENSMUSG00000029559.16	ENSMUST00000031538.9	2607	6	73	701	73	-701	multi-exon	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCCTGCAGTAGGCCCGA	NA	NA	NA	NA	NA	NA	NA	NA	115080289	115087141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_115080415_115083844_115083888_115084076_115084176_115084349_115084424_115085221_115085313_115085740
ENSMUST00000031539.12	chr5	-	2627	11	FSM	ENSMUSG00000029560.13	ENSMUST00000031539.12	2627	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGGTTTCCACGCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	140375017	140326057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140374902
ENSMUST00000031542.13	chr5	+	2015	6	FSM	ENSMUSG00000029561.18	ENSMUST00000031542.13	3123	6	94	1014	94	-1014	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAGAAGATAGAAGATGC	NA	NA	NA	NA	NA	NA	NA	NA	115035090	115049281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_115035924_115037802_115038092_115039300_115039477_115042892_115043138_115044723_115044866_115048951
ENSMUST00000031555.3	chr5	+	2305	8	FSM	ENSMUSG00000029570.6	ENSMUST00000031555.3	2305	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAAGGGGCCCTAGTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	140593074	140601300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_140593600_140597604_140597654_140598045_140598146_140598257_140598412_140598514_140598601_140598910_140599077_140599945_140600032_140600161
ENSMUST00000031556.14	chr6	+	1299	9	FSM	ENSMUSG00000029571.15	ENSMUST00000031556.14	6002	9	15	4688	15	-4688	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAGGTGAAAAATTGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	13069852	13084580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_13069960_13070306_13070414_13071740_13071963_13075034_13075099_13078090_13078251_13081538_13081680_13082411_13082462_13083367_13083422_13084186
ENSMUST00000031565.15	chr5	+	1341	5	FSM	ENSMUSG00000029581.15	ENSMUST00000031565.15	2675	5	500	834	467	-832	multi-exon	FALSE	canonical	NA	NA	NA	NA	487	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTCTGACCTCAGTCAA	NA	NA	NA	NA	NA	NA	NA	NA	142946597	142958106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650
ENSMUST00000031598.11	chr5	+	4322	20	FSM	ENSMUSG00000029599.14	ENSMUST00000031598.11	4322	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGGTATTCCTCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	120750803	120766657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_120751372_120755023_120755154_120756204_120756276_120756664_120756854_120756940_120756991_120757669_120757712_120757828_120757925_120758322_120758445_120758536_120758599_120758691_120758824_120759679_120759891_120761245_120761381_120761636_120761874_120761956_120762031_120762602_120762795_120763766_120763910_120763990_120764105_120764465_120764571_120764898_120765015_120765124
ENSMUST00000031617.13	chr5	+	1270	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTGACTATAGACTCA	NA	NA	NA	NA	NA	NA	NA	NA	121342543	121347304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
ENSMUST00000031625.15	chr5	+	1632	10	FSM	ENSMUSG00000029621.15	ENSMUST00000031625.15	1632	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	547	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTTTCTTTATACTCT	NA	NA	NA	NA	NA	NA	NA	NA	145020639	145045571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038080_145041251_145041328_145041507_145041702_145043854_145043946_145045186
ENSMUST00000031627.9	chr5	-	2353	6	FSM	ENSMUSG00000029623.15	ENSMUST00000031627.9	2353	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGATGCTTCTGGTTG	NA	NA	NA	NA	NA	NA	NA	NA	145077048	145065578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_145067186_145068174_145068327_145069668_145069791_145071874_145071983_145073711_145073804_145076776
ENSMUST00000031632.9	chr5	-	1085	3	FSM	ENSMUSG00000029627.13	ENSMUST00000031632.9	1967	3	11	871	11	-651	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGCCCCACAGCTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	145138667	145132626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_145133010_145135486_145135611_145138089
ENSMUST00000031637.8	chr6	-	468	4	FSM	ENSMUSG00000029632.8	ENSMUST00000031637.8	468	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCGTGTCACTATTTAATG	NA	NA	NA	NA	NA	NA	NA	NA	11907449	11900371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_11900591_11905200_11905262_11906018_11906080_11907322
ENSMUST00000031646.8	chr5	+	474	4	FSM	ENSMUSG00000029641.9	ENSMUST00000031646.8	1126	4	0	652	0	-652	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGGTTTATTCCATAACA	NA	NA	NA	NA	NA	NA	NA	NA	146781880	146783884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_146782151_146782469_146782527_146782649_146782730_146783817
ENSMUST00000031654.10	chr5	+	500	6	FSM	ENSMUSG00000029649.11	ENSMUST00000031654.10	1579	6	192	887	0	48	multi-exon	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATAGTTGCCTGCTACAGT	NA	NA	NA	NA	NA	NA	NA	NA	147797462	147812379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_147797502_147799362_147799461_147805532_147805594_147806221_147806324_147809375_147809470_147812273
ENSMUST00000031670.10	chr6	+	919	2	FSM	ENSMUSG00000032766.10	ENSMUST00000031670.10	919	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGTGACTTAAGACGGC	NA	NA	NA	NA	NA	NA	NA	NA	4003903	4008445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_4004412_4008034
ENSMUST00000031678.10	chr6	-	2490	9	FSM	ENSMUSG00000029669.15	ENSMUST00000031678.10	2490	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGGTTTGCGTATTTAC	NA	NA	NA	NA	NA	NA	NA	NA	21852514	21771393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_21772936_21795576_21795721_21799877_21799986_21806237_21806313_21835386_21835523_21836411_21836495_21851008_21851145_21852010_21852167_21852404
ENSMUST00000031678.10-0	chr6	-	2193	9	FSM	ENSMUSG00000029669.15	ENSMUST00000031678.10	2490	9	72	225	72	-225	multi-exon	FALSE	canonical	NA	NA	NA	NA	819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGCTCATAGGAATCTCTA	NA	NA	NA	NA	NA	NA	NA	NA	21852442	21771618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_21772936_21795576_21795721_21799877_21799986_21806237_21806313_21835386_21835523_21836411_21836495_21851008_21851145_21852010_21852167_21852404
ENSMUST00000031680.10	chr6	+	3800	12	FSM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAGCTGAGTGTTCGAT	NA	NA	NA	NA	NA	NA	NA	NA	21949569	21976037	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_21949793_21950036_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
ENSMUST00000031728.5	chr5	-	881	2	FSM	ENSMUSG00000029715.6	ENSMUST00000031728.5	881	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGGCTTCGAATGGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	137500780	137499700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_137500342_137500540
ENSMUST00000031779.17	chr6	+	1677	7	FSM	ENSMUSG00000029767.17	ENSMUST00000031779.17	3229	7	13	1539	0	633	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGACTAGCTGTTTTCTAA	NA	NA	NA	NA	NA	NA	NA	NA	29348117	29375135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
ENSMUST00000031822.13	chr6	+	2674	16	FSM	ENSMUSG00000029802.14	ENSMUST00000031822.13	5717	16	0	3043	0	122	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATCTTTTATACTGATAC	NA	NA	NA	NA	NA	NA	NA	NA	58573655	58669618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
ENSMUST00000031845.13	chr6	-	2502	11	FSM	ENSMUSG00000029821.16	ENSMUST00000031845.13	2502	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTTGGCTGTTCTATGT	NA	NA	NA	NA	NA	NA	NA	NA	50240842	50184380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_50185187_50193329_50193404_50196216_50196419_50197968_50198097_50199715_50199881_50204258_50204380_50206265_50206438_50222909_50223103_50228255_50228494_50238713_50238898_50240623
ENSMUST00000031862.14	chr6	+	713	6	FSM	ENSMUSG00000029836.16	ENSMUST00000031862.14	1889	6	0	1176	0	-505	multi-exon	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTCCTCAGATTGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	51447509	51459508	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
ENSMUST00000031971.13	chr6	+	1063	6	FSM	ENSMUSG00000029911.15	ENSMUST00000031971.13	1063	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGACATGTTTTATTATTT	NA	NA	NA	NA	NA	NA	NA	NA	40448348	40455521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_40448394_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856
ENSMUST00000031985.13	chr6	-	1707	8	FSM	ENSMUSG00000029922.16	ENSMUST00000031985.13	3046	8	0	1339	0	-33	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTAGGCAGGCCTCTCAAA	NA	NA	NA	NA	NA	NA	NA	NA	39397396	39376076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
ENSMUST00000032060.15	chr6	+	948	8	FSM	ENSMUSG00000029993.17	ENSMUST00000032060.15	948	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATACATTTGCTTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	86986817	87005436	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997825_87000109_87000171_87002467_87002643_87005276
ENSMUST00000032065.15	chr6	-	4295	6	FSM	ENSMUSG00000029998.15	ENSMUST00000032065.15	4295	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	605	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	NA	NA	NA	NA	NA	NA	NA	86374136	86362987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_86366354_86368657_86368811_86369118_86369331_86371390_86371566_86372895_86373103_86373954
ENSMUST00000032071.13	chr6	-	1905	9	FSM	ENSMUSG00000030002.16	ENSMUST00000032071.13	6435	9	60	4470	60	-4470	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTAGTTTTCTCTCTCATG	NA	NA	NA	NA	NA	NA	NA	NA	85938589	85923719	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85935565_85935698_85936197_85936274_85938419
ENSMUST00000032106.6	chr6	+	1609	4	FSM	ENSMUSG00000030030.6	ENSMUST00000032106.6	2020	4	97	314	0	-260	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCTTTGGAAGCCCATG	NA	NA	NA	NA	NA	NA	NA	NA	83133482	83139613	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_83133573_83137893_83138116_83138197_83138420_83138538
ENSMUST00000032114.8	chr6	+	1326	4	FSM	ENSMUSG00000030036.9	ENSMUST00000032114.8	2780	4	0	1454	0	-1454	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGGGTCTGAACAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	83092476	83094425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_83092908_83092999_83093230_83093608_83093806_83093957
ENSMUST00000032135.6	chr6	-	1262	2	FSM	ENSMUSG00000030055.17	ENSMUST00000032135.6	1262	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACATTAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	87788761	87770950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_87771780_87788328
ENSMUST00000032143.8	chr6	+	3633	10	FSM	ENSMUSG00000030062.8	ENSMUST00000032143.8	3633	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2364	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGTATGCTTGTTAGA	NA	NA	NA	NA	NA	NA	NA	NA	88061463	88082286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077750_88077843_88077964_88078956_88079203_88080346
ENSMUST00000032168.7	chr6	-	3172	12	FSM	ENSMUSG00000030082.15	ENSMUST00000032168.7	3172	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1088	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCAGAAAGCTTGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	88495887	88480560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
ENSMUST00000032172.14	chr6	-	1121	8	FSM	ENSMUSG00000030086.17	ENSMUST00000032172.14	1121	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	410	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCACCCAGTCACTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	89572634	89360132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89444371_89444456_89544568_89544714_89546324_89546395_89551349_89551573_89572440
ENSMUST00000032183.6	chr6	+	2903	12	FSM	ENSMUSG00000030095.11	ENSMUST00000032183.6	2903	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	412	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTCGTTTGCTGTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	91450684	91465445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_91450881_91454226_91454377_91455187_91455323_91455687_91455783_91456554_91456605_91456862_91456933_91457631_91457703_91458913_91459036_91459235_91459311_91459642_91459745_91462298_91462417_91463726
ENSMUST00000032185.9	chr6	+	4481	15	FSM	ENSMUSG00000030096.9	ENSMUST00000032185.9	6186	15	67	1638	67	-1638	multi-exon	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCACTGTGGGCAGCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	91661100	91734409	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_91661290_91675969_91676014_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894
ENSMUST00000032191.16	chr6	-	2593	9	FSM	ENSMUSG00000030101.16	ENSMUST00000032191.16	2593	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	328	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGACTTCACTTTTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	108162543	108083988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_108085548_108095580_108095641_108121551_108121666_108129187_108129303_108130073_108130197_108131919_108132003_108150316_108150392_108152948_108153123_108162253
ENSMUST00000032194.11	chr6	+	787	5	FSM	ENSMUSG00000030103.12	ENSMUST00000032194.11	3113	5	0	2326	0	1900	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCAGCTCGTCACTCATC	NA	NA	NA	NA	NA	NA	NA	NA	108637589	108641560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_108637954_108638121_108638192_108638465_108638574_108639481_108639606_108641439
ENSMUST00000032196.9	chr6	+	1863	7	FSM	ENSMUSG00000030105.9	ENSMUST00000032196.9	4443	7	0	2580	0	925	multi-exon	TRUE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTTATTGTTTGCTATG	NA	NA	NA	NA	NA	NA	NA	NA	108760059	108799659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_108760339_108790587_108790669_108791944_108792019_108792218_108792313_108795205_108795274_108795503_108795575_108798463
ENSMUST00000032214.14	chr6	+	1120	9	FSM	ENSMUSG00000030120.15	ENSMUST00000032214.14	1451	9	0	331	0	-331	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAACTTGAGTTCTCATGTT	NA	NA	NA	NA	NA	NA	NA	NA	124908438	124912776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912564
ENSMUST00000032216.7	chr6	-	1149	5	FSM	ENSMUSG00000030122.13	ENSMUST00000032216.7	1149	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTCTCCTGCTTTCCCGC	NA	NA	NA	NA	NA	NA	NA	NA	124894909	124890643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124894522
ENSMUST00000032220.15	chr6	-	1817	8	FSM	ENSMUSG00000030127.16	ENSMUST00000032220.15	1817	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	124942411	124935778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942247
ENSMUST00000032264.9	chr6	+	1820	4	FSM	ENSMUSG00000030161.9	ENSMUST00000032264.9	1820	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1338	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGGCCTCTTTCTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	129510122	129519309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_129510500_129514453_129514533_129515532_129515652_129518064
ENSMUST00000032272.13	chr6	-	4184	8	FSM	ENSMUSG00000030168.14	ENSMUST00000032272.13	4184	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTGTGTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	119394665	119330110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_119332890_119334176_119334371_119335882_119336071_119336311_119336499_119338788_119338961_119342221_119342342_119347110_119347370_119394380
ENSMUST00000032307.12	chr6	-	767	5	FSM	ENSMUSG00000030188.13	ENSMUST00000032307.12	767	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTAGAATAGGTATTTGC	NA	NA	NA	NA	NA	NA	NA	NA	131270207	131261350	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_131261692_131262605_131262689_131264998_131265110_131266351_131266411_131270034
ENSMUST00000032370.13	chr6	-	2112	16	FSM	ENSMUSG00000030243.17	ENSMUST00000032370.13	2112	16	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTCTAAAGTTACATTT	NA	NA	NA	NA	NA	NA	NA	NA	142332762	142296067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_142296272_142308531_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332747
ENSMUST00000032372.7	chr6	+	2818	5	FSM	ENSMUSG00000030245.11	ENSMUST00000032372.7	2818	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3047	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGTCAAGTTTATCTT	NA	NA	NA	NA	NA	NA	NA	NA	142332946	142349584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_142333096_142338055_142338148_142339653_142339833_142341913_142341996_142347268
ENSMUST00000032383.14	chr6	+	4431	3	FSM	ENSMUSG00000030255.14	ENSMUST00000032383.14	4431	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	306	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATGGTGTTGAGTATGTT	NA	NA	NA	NA	NA	NA	NA	NA	145879847	145910949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_145880098_145901320_145901408_145906855
ENSMUST00000032386.11	chr6	-	2091	5	FSM	ENSMUSG00000030256.12	ENSMUST00000032386.11	6133	5	206	3836	-50	1426	multi-exon	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAATTTTTGTAACATTA	NA	NA	NA	NA	NA	NA	NA	NA	145811078	145807804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_145809465_145809856_145809969_145810301_145810410_145810722_145810787_145810931
ENSMUST00000032398.15	chr6	+	1538	10	FSM	ENSMUSG00000030264.15	ENSMUST00000032398.15	2163	10	102	523	102	-523	multi-exon	TRUE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCTTCTAAAGCGCACTG	NA	NA	NA	NA	NA	NA	NA	NA	113023287	113044711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_113023352_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
ENSMUST00000032409.15	chr6	-	1496	12	FSM	ENSMUSG00000030272.16	ENSMUST00000032409.15	1496	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCGTTTGCTCAAATAGC	NA	NA	NA	NA	NA	NA	NA	NA	113320945	113311084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_113311370_113311474_113311593_113313134_113313223_113313318_113313398_113314153_113314267_113315071_113315148_113315240_113315368_113316245_113316385_113316467_113316543_113317252_113317385_113318828_113318944_113320796
ENSMUST00000032429.9	chr6	+	421	4	FSM	ENSMUSG00000030291.13	ENSMUST00000032429.9	814	4	32	361	-1	-361	multi-exon	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACCAGAAGTGTTACCC	NA	NA	NA	NA	NA	NA	NA	NA	146544076	146551739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_146544151_146549662_146549778_146550647_146550749_146551608
ENSMUST00000032441.14	chr6	+	2459	13	FSM	ENSMUSG00000030301.18	ENSMUST00000032441.14	2459	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGATTGTCATGTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	147377368	147534110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_147377558_147409281_147409326_147412321_147412401_147435526_147435688_147437085_147437290_147438873_147438979_147464132_147464211_147476970_147477079_147491884_147491978_147492066_147492136_147493536_147493714_147508379_147508494_147533072
ENSMUST00000032477.6	chr6	+	1090	8	FSM	ENSMUSG00000030327.9	ENSMUST00000032477.6	2476	8	107	1279	21	-1047	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTATGAGTGGGAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	122851539	122864621	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_122851623_122857371_122857473_122857616_122857722_122858459_122858542_122859226_122859336_122859772_122859957_122863710_122863814_122864298
ENSMUST00000032485.7	chr6	+	356	3	FSM	ENSMUSG00000030335.7	ENSMUST00000032485.7	3427	3	52	3019	52	-3019	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAAGGGCCCAGTATGGC	NA	NA	NA	NA	NA	NA	NA	NA	125169179	125170213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_125169397_125169478_125169590_125170185
ENSMUST00000032489.8	chr6	-	2107	10	FSM	ENSMUSG00000030339.8	ENSMUST00000032489.8	2107	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	334	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGGGTTTTATGTGG	NA	NA	NA	NA	NA	NA	NA	NA	125290848	125283533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_125284435_125284892_125285110_125286156_125286183_125286421_125286530_125289005_125289086_125289232_125289330_125289714_125289874_125289956_125290083_125290352_125290450_125290552
ENSMUST00000032492.9	chr6	-	1228	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7660	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	125471754	125437228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
ENSMUST00000032503.12	chr6	-	1405	9	FSM	ENSMUSG00000030352.16	ENSMUST00000032503.12	1405	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTAGCTCTCTGATTTAT	NA	NA	NA	NA	NA	NA	NA	NA	128120523	127940869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_127941463_127942200_127942285_127942661_127942794_127943344_127943447_127943691_127943767_127944043_127944236_128011128_128011209_128060344_128060445_128120476
ENSMUST00000032512.15	chr6	-	1274	6	FSM	ENSMUSG00000030361.17	ENSMUST00000032512.15	1274	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGGTGCCTCATGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	128599897	128586189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_128586815_128595016_128595133_128595419_128595575_128596062_128596138_128597214_128597314_128599693
ENSMUST00000032555.10	chr7	-	946	9	FSM	ENSMUSG00000002984.18	ENSMUST00000032555.10	1646	9	386	314	386	-314	multi-exon	FALSE	canonical	NA	NA	NA	NA	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGTGGGAAGGAGGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	19448964	19435567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_19435783_19436772_19436876_19436990_19437068_19437193_19437317_19444657_19444764_19444842_19444945_19447593_19447687_19448217_19448286_19448905
ENSMUST00000032597.12	chr7	+	1106	5	FSM	ENSMUSG00000030432.13	ENSMUST00000032597.12	1106	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4510	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCATGTCCTTTATATT	NA	NA	NA	NA	NA	NA	NA	NA	4795872	4798065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_4795998_4796319_4796409_4796501_4796626_4797062_4797182_4797416
ENSMUST00000032726.14	chr7	+	908	5	FSM	ENSMUSG00000078681.11	ENSMUST00000032726.14	908	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	NA	NA	NA	NA	NA	NA	NA	65343155	65351650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_65343318_65344890_65345076_65347443_65347619_65348839_65348916_65351340
ENSMUST00000032728.9	chr7	+	3192	19	FSM	ENSMUSG00000030515.10	ENSMUST00000032728.9	3192	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCGGTATGTTCCATTGT	NA	NA	NA	NA	NA	NA	NA	NA	65294645	65341839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_65294963_65296000_65296070_65297225_65297417_65302007_65302132_65305431_65305554_65308607_65308726_65310866_65310932_65312048_65312128_65313620_65313768_65314628_65314728_65325711_65325879_65327743_65327907_65332514_65332653_65333555_65333634_65333809_65333911_65336185_65336291_65338626_65338700_65339715_65339831_65340918
ENSMUST00000032747.7	chr7	+	1510	4	FSM	ENSMUSG00000030532.7	ENSMUST00000032747.7	1510	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAAGGCTTCTTAAATC	NA	NA	NA	NA	NA	NA	NA	NA	79992851	79996462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_79992998_79993286_79993343_79993463_79993705_79995395
ENSMUST00000032749.12	chr7	+	2156	23	FSM	ENSMUSG00000030534.14	ENSMUST00000032749.12	2574	23	85	333	85	-333	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGTTTGGCATCTACC	NA	NA	NA	NA	NA	NA	NA	NA	79919481	79940994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_79919828_79923976_79924058_79924371_79924434_79925793_79925844_79926145_79926214_79929719_79929766_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935379_79935581_79935647_79935758_79935814_79936855_79936903_79937525_79937659_79938147_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862
ENSMUST00000032775.12	chr7	-	1817	6	FSM	ENSMUSG00000030556.14	ENSMUST00000032775.12	1817	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTTGTTCTGGGCACA	NA	NA	NA	NA	NA	NA	NA	NA	67294955	67244146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_67245480_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
ENSMUST00000032796.14	chr7	+	2702	5	FSM	ENSMUSG00000011427.17	ENSMUST00000032796.14	3376	5	0	674	0	-674	multi-exon	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTACCCAGCACTAGA	NA	NA	NA	NA	NA	NA	NA	NA	29515543	29529691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_29515715_29522404_29522570_29524254_29524379_29525116_29525213_29527545
ENSMUST00000032803.12	chr7	+	1534	5	FSM	ENSMUSG00000047473.15	ENSMUST00000032803.12	3558	5	25	1999	25	-1999	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACCGGCGAGAAGCCCTA	NA	NA	NA	NA	NA	NA	NA	NA	29483447	29492128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_29484327_29485643_29485729_29487473_29487601_29488762_29488862_29491784
ENSMUST00000032808.6	chr7	-	1466	4	FSM	ENSMUSG00000030587.6	ENSMUST00000032808.6	1466	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	275	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGGGCTCTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	28947891	28945985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_28947160_28947321_28947391_28947552_28947666_28947781
ENSMUST00000032809.10	chr7	+	857	8	FSM	ENSMUSG00000030588.13	ENSMUST00000032809.10	1111	8	0	254	0	-119	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGAAGGAGTGCCAGTGCG	NA	NA	NA	NA	NA	NA	NA	NA	28937777	28946700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_28937871_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUST00000032840.5	chr7	+	805	6	FSM	ENSMUSG00000030611.11	ENSMUST00000032840.5	1056	6	251	0	251	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	78433117	78442737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_78433172_78433320_78433429_78438422_78438522_78440384_78440515_78441621_78441688_78442389
ENSMUST00000032840.5-1	chr7	+	797	6	FSM	ENSMUSG00000030611.11	ENSMUST00000032840.5	1056	6	0	259	0	-259	multi-exon	FALSE	canonical	NA	NA	NA	NA	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGCTCGAAGGCTGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	78432866	78442478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_78433172_78433320_78433429_78438422_78438522_78440384_78440515_78441621_78441688_78442389
ENSMUST00000032842.13	chr7	+	1596	9	FSM	ENSMUSG00000030613.14	ENSMUST00000032842.13	1596	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	284	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGTAAATGTGTTAT	NA	NA	NA	NA	NA	NA	NA	NA	92210356	92231502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92221746_92221849_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
ENSMUST00000032844.7	chr7	-	799	5	FSM	ENSMUSG00000030615.13	ENSMUST00000032844.7	799	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGCAACATTAAAATACTT	NA	NA	NA	NA	NA	NA	NA	NA	90106437	90099907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_90100144_90100750_90100866_90101914_90102109_90104631_90104728_90106279
ENSMUST00000032856.13	chr7	+	2900	14	FSM	ENSMUSG00000030621.18	ENSMUST00000032856.13	4485	14	183	1402	183	-1402	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATAAGAGTAGGTCCGATT	NA	NA	NA	NA	NA	NA	NA	NA	89282093	89502165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_89282302_89385835_89385970_89389014_89389165_89435633_89435710_89445827_89445990_89455854_89455959_89482904_89483015_89495002_89495101_89495407_89495522_89497131_89497238_89497815_89497959_89498801_89498976_89499540_89499640_89500943
ENSMUST00000032879.15	chr7	+	2067	5	FSM	ENSMUSG00000030643.15	ENSMUST00000032879.15	9456	5	64	7325	64	563	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTAGTGTTCCTTTCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	92390874	92486418	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_92391051_92469190_92469292_92473005_92473090_92478733_92478918_92484896
ENSMUST00000032882.9	chr7	+	683	3	FSM	ENSMUSG00000030647.9	ENSMUST00000032882.9	683	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCCTTTCCTGGTTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	97049209	97057009	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_97049565_97056072_97056217_97056825
ENSMUST00000032887.4	chr7	-	914	6	FSM	ENSMUSG00000030652.12	ENSMUST00000032887.4	914	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTGGTTTTCTTGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	118132579	118124284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_118124518_118125046_118125116_118126559_118126700_118127526_118127642_118128781_118128961_118132401
ENSMUST00000032899.12	chr7	+	1479	5	FSM	ENSMUSG00000030663.13	ENSMUST00000032899.12	1479	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	115692535	115704445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702556_115703446
ENSMUST00000032910.13	chr7	+	766	7	FSM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTGTGTTCATGCGCA	NA	NA	NA	NA	NA	NA	NA	NA	126810779	126813470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126810936_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUST00000032910.13-0	chr7	+	691	7	FSM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	0	75	0	-65	multi-exon	FALSE	canonical	NA	NA	NA	NA	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTGTAGCCGCTCCATC	NA	NA	NA	NA	NA	NA	NA	NA	126810779	126813395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126810936_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUST00000032915.8	chr7	-	2115	14	FSM	ENSMUSG00000030677.9	ENSMUST00000032915.8	2115	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGAGCCTGGTTTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	126641643	126626902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
ENSMUST00000032920.5	chr7	+	723	6	FSM	ENSMUSG00000030682.5	ENSMUST00000032920.5	1974	6	674	577	0	-66	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTGCTCAAGTCCGTCATT	NA	NA	NA	NA	NA	NA	NA	NA	126575759	126578757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578086_126578169_126578493_126578576_126578706
ENSMUST00000032920.5-1	chr7	+	711	6	FSM	ENSMUSG00000030682.5	ENSMUST00000032920.5	1974	6	816	447	0	64	multi-exon	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTACTGTACCACGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	126575901	126578887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578086_126578169_126578493_126578576_126578706
ENSMUST00000032926.12	chr7	-	941	6	FSM	ENSMUSG00000060538.15	ENSMUST00000032926.12	941	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTGTAAGGTACTTAC	NA	NA	NA	NA	NA	NA	NA	NA	126497448	126485391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197_126496400_126497395
ENSMUST00000032927.14	chr7	+	1400	7	FSM	ENSMUSG00000030688.16	ENSMUST00000032927.14	1400	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGCTCTTTGTGCCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	100970319	100995515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_100970560_100970920_100971241_100991704_100991853_100992390_100992495_100993123_100993242_100994841_100994895_100995098
ENSMUST00000032934.12	chr7	-	1511	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	126398426	126394405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
ENSMUST00000032936.8	chr7	-	1359	9	FSM	ENSMUSG00000030697.8	ENSMUST00000032936.8	1359	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTCTGTCAGGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	126391668	126385037	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232_126391396_126391594
ENSMUST00000032956.10	chr7	+	929	10	FSM	ENSMUSG00000030714.15	ENSMUST00000032956.10	1312	10	93	290	93	-50	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGCCCAGAGGTACGT	NA	NA	NA	NA	NA	NA	NA	NA	126248573	126271807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
ENSMUST00000032961.4	chr7	-	829	3	FSM	ENSMUSG00000030717.10	ENSMUST00000032961.4	829	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	782	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTGGCGTGTGTTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	126224848	126222420	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126222752_126224061_126224206_126224494
ENSMUST00000032962.11	chr7	-	2386	15	FSM	ENSMUSG00000030720.17	ENSMUST00000032962.11	2386	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTGATTTCTTTCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	126182419	126170571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171
ENSMUST00000032967.4	chr7	+	428	2	FSM	ENSMUSG00000030725.5	ENSMUST00000032967.4	1663	2	82	1153	82	-1153	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGAACTGTTCAACCGAC	NA	NA	NA	NA	NA	NA	NA	NA	99808565	99809419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_99808955_99809380
ENSMUST00000033008.10	chr7	-	1201	10	FSM	ENSMUSG00000030751.19	ENSMUST00000033008.10	1201	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	113875353	113863840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
ENSMUST00000033009.16	chr7	+	549	5	FSM	ENSMUSG00000030753.16	ENSMUST00000033009.16	3723	5	225	2949	-63	-1786	multi-exon	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTTATTTGAGATTCTG	NA	NA	NA	NA	NA	NA	NA	NA	98352534	98364320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_98352686_98356203_98356325_98359332_98359441_98362065_98362103_98364188
ENSMUST00000033044.16	chr7	-	2627	13	FSM	ENSMUSG00000030780.16	ENSMUST00000033044.16	2627	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGCTTCATACTGCAGGC	NA	NA	NA	NA	NA	NA	NA	NA	127897342	127870550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_127871788_127872643_127872722_127872822_127872967_127873804_127873876_127875257_127875316_127875399_127875585_127875666_127875738_127884284_127884387_127887435_127887542_127887630_127887664_127889761_127889808_127896633_127896749_127896961
ENSMUST00000033074.8	chr7	-	748	3	FSM	ENSMUSG00000096145.3	ENSMUST00000033074.8	748	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTAGCATATGTCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	127494789	127492234	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_127492664_127493676_127493787_127494580
ENSMUST00000033096.16	chr7	-	2111	13	FSM	ENSMUSG00000030824.18	ENSMUST00000033096.16	2111	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCCTGCCCTCTTCCAA	NA	NA	NA	NA	NA	NA	NA	NA	45159750	45142531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_45143374_45143540_45143626_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129_45159272_45159746
ENSMUST00000033127.12	chr7	-	1465	11	FSM	ENSMUSG00000030839.13	ENSMUST00000033127.12	1465	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCTGGCAGATTATGGG	NA	NA	NA	NA	NA	NA	NA	NA	46289231	46092577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_46092960_46165091_46165129_46240030_46240198_46264041_46264201_46268119_46268183_46270984_46271099_46275632_46275694_46282083_46282179_46283178_46283335_46284844_46284981_46289136
ENSMUST00000033131.12	chr7	+	1119	5	FSM	ENSMUSG00000030842.13	ENSMUST00000033131.12	1119	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1860	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTCTGTCCTGCCCACT	NA	NA	NA	NA	NA	NA	NA	NA	101555110	101561110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_101555248_101558870_101559017_101559235_101559314_101559626_101559754_101560479
ENSMUST00000033133.12	chr7	-	880	5	FSM	ENSMUSG00000030844.12	ENSMUST00000033133.12	880	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTAGTCATTTCTACTT	NA	NA	NA	NA	NA	NA	NA	NA	128019897	127975344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_127975767_127990687_127990832_128004893_128004981_128006082_128006202_128019789
ENSMUST00000033135.9	chr7	-	1580	12	FSM	ENSMUSG00000030846.16	ENSMUST00000033135.9	1580	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACTATAAATTTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	128063079	128044003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
ENSMUST00000033136.9	chr7	+	2014	4	FSM	ENSMUSG00000030847.9	ENSMUST00000033136.9	2562	4	0	548	0	-548	multi-exon	FALSE	canonical	NA	NA	NA	NA	235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCACTGCGGGACTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	128125339	128148157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_128125769_128141696_128142036_128143530_128143933_128147313
ENSMUST00000033154.8-1	chr7	+	1818	10	FSM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	142	239	142	-239	multi-exon	FALSE	canonical	NA	NA	NA	NA	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGCACTGTAGGCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	121758803	121768857	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
ENSMUST00000033156.5	chr7	+	1121	6	FSM	ENSMUSG00000030868.7	ENSMUST00000033156.5	1532	6	31	380	31	-380	multi-exon	FALSE	canonical	NA	NA	NA	NA	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCCAAGTACTGCTCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	121732294	121747887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
ENSMUST00000033169.9	chr7	-	2525	5	FSM	ENSMUSG00000030878.12	ENSMUST00000033169.9	2525	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTCTACGTCTGTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	120581535	120556258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_120558021_120559314_120559480_120559732_120559882_120569548_120569662_120581199
ENSMUST00000033176.7	chr7	+	1461	14	FSM	ENSMUSG00000030884.13	ENSMUST00000033176.7	1896	14	64	371	64	-371	multi-exon	FALSE	canonical	NA	NA	NA	NA	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGTCTCTTAATAATTAAT	NA	NA	NA	NA	NA	NA	NA	NA	120234462	120258376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
ENSMUST00000033210.13	chr7	+	1484	5	FSM	ENSMUSG00000030917.14	ENSMUST00000033210.13	1484	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTTTTCTTTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	119701575	119720209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_119701739_119703852_119704053_119714608_119714778_119715442_119715582_119719396
ENSMUST00000033283.10	chr7	+	3997	19	FSM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGGTGGCTATGAACGGC	NA	NA	NA	NA	NA	NA	NA	NA	102090901	102118978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
ENSMUST00000033313.3	chrX	+	1651	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	0	673	0	244	multi-exon	FALSE	canonical	NA	NA	NA	NA	212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTCTGGACGTGTATATG	NA	NA	NA	NA	NA	NA	NA	NA	12454039	12482615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
ENSMUST00000033372.13	chrX	+	3547	5	FSM	ENSMUSG00000060090.17	ENSMUST00000033372.13	4417	5	94	776	16	-776	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTAGTGTTTTAAAAATAC	NA	NA	NA	NA	NA	NA	NA	NA	20230813	20266316	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_20231068_20243119_20243786_20247943_20248059_20263459_20263546_20263890
ENSMUST00000033386.12	chr7	+	992	3	FSM	ENSMUSG00000031070.16	ENSMUST00000033386.12	2087	3	71	1024	0	-816	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTATCTGCATCAACAG	NA	NA	NA	NA	NA	NA	NA	NA	144854635	144862270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_144854730_144857550_144857666_144861487
ENSMUST00000033388.12	chr7	+	537	5	FSM	ENSMUSG00000031072.15	ENSMUST00000033388.12	2015	5	36	1442	-9	-1442	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGATGTCTGCACATTAAG	NA	NA	NA	NA	NA	NA	NA	NA	144468907	144473429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_144469067_144470164_144470271_144471346_144471418_144472960_144473079_144473346
ENSMUST00000033430.3	chrX	+	1158	2	FSM	ENSMUSG00000031104.3	ENSMUST00000033430.3	1158	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCACGTGGCTTTGTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	47608161	47619109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_47608736_47618525
ENSMUST00000033458.3	chrX	+	1022	8	FSM	ENSMUSG00000031125.3	ENSMUST00000033458.3	1022	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	674	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTGGCAAATAGTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	55181931	55198858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_55181986_55183330_55183457_55183770_55183835_55184104_55184140_55192435_55192554_55193247_55193348_55198014_55198114_55198432
ENSMUST00000033483.5	chrX	-	2353	17	FSM	ENSMUSG00000031143.5	ENSMUST00000033483.5	2353	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACGCTTAGGCATGGATT	NA	NA	NA	NA	NA	NA	NA	NA	7471756	7460047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462262_7462732_7462853_7462969_7463033_7463776_7463972_7465396_7465576_7465672_7465740_7465867_7465975_7466859_7466993_7470398_7470577_7471482
ENSMUST00000033489.8	chrX	+	1339	3	FSM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1396	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCCTCCTGTGTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	7594677	7597303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_7595002_7595954_7596173_7596506
ENSMUST00000033490.13	chrX	-	3658	10	FSM	ENSMUSG00000031150.14	ENSMUST00000033490.13	3658	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATTGAGTCTCTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	7607580	7597952	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_7600338_7601310_7601410_7601539_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400_7604492_7604608_7604763_7607450
ENSMUST00000033497.9	chrX	-	1104	7	FSM	ENSMUSG00000031157.11	ENSMUST00000033497.9	1104	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGGCTTGAGTGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	7765508	7760757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765407
ENSMUST00000033498.10	chrX	+	2381	6	FSM	ENSMUSG00000031158.12	ENSMUST00000033498.10	2381	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTTGCTTGCTGTTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	7765595	7774590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772439_7772519_7772631_7772726
ENSMUST00000033498.10-0	chrX	+	2034	6	FSM	ENSMUSG00000031158.12	ENSMUST00000033498.10	2381	6	0	347	0	-347	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATCTTTCCCTTCTCTA	NA	NA	NA	NA	NA	NA	NA	NA	7765595	7774243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772439_7772519_7772631_7772726
ENSMUST00000033506.13	chrX	-	2578	9	FSM	ENSMUSG00000031166.14	ENSMUST00000033506.13	4183	9	441	1164	403	943	multi-exon	TRUE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGCAGTAGGGAAATTAGG	NA	NA	NA	NA	NA	NA	NA	NA	7998606	7990703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7997865_7998525
ENSMUST00000033509.15	chrX	-	1743	5	FSM	ENSMUSG00000031168.15	ENSMUST00000033509.15	1743	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	693	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGAGATATTTAATTACT	NA	NA	NA	NA	NA	NA	NA	NA	8059751	8051567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_8052073_8052882_8053014_8053121_8053159_8056317_8056676_8059039
ENSMUST00000033540.6	chrX	+	1595	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGACAATTTTTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	74557904	74578548	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
ENSMUST00000033540.6-0	chrX	+	1341	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	18	236	18	-236	multi-exon	FALSE	canonical	NA	NA	NA	NA	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAATCTGCATTATTTG	NA	NA	NA	NA	NA	NA	NA	NA	74557922	74578312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
ENSMUST00000033541.5	chrX	+	1989	5	FSM	ENSMUSG00000031198.5	ENSMUST00000033541.5	2562	5	23	550	23	-550	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAAATATTTTTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	74426027	74439515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_74426058_74430707_74430859_74434389_74434466_74435245_74435378_74437915
ENSMUST00000033543.14	chrX	-	992	3	FSM	ENSMUSG00000090110.9	ENSMUST00000033543.14	992	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTTTGTTACTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	74460171	74448451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_74448825_74453151_74453220_74459620
ENSMUST00000033544.14	chrX	+	1041	11	FSM	ENSMUSG00000031201.18	ENSMUST00000033544.14	4310	11	69	3200	0	-907	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATGTTTTTTGCAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	74460302	74494407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289
ENSMUST00000033577.11	chrX	+	758	6	FSM	ENSMUSG00000031226.14	ENSMUST00000033577.11	2638	6	19	1861	14	-1861	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGACATCTTTCTAGCTAG	NA	NA	NA	NA	NA	NA	NA	NA	104123380	104126931	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104126621
ENSMUST00000033578.7	chrX	+	3550	1	FSM	ENSMUSG00000031227.9	ENSMUST00000033578.7	3550	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTATTCAATAAATATAT	NA	NA	NA	NA	NA	NA	NA	NA	104163983	104167533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_104164000_104167500
ENSMUST00000033582.5	chrX	+	318	3	FSM	ENSMUSG00000031231.5	ENSMUST00000033582.5	1001	3	16	667	16	-667	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGCAGAGTCACCCCAA	NA	NA	NA	NA	NA	NA	NA	NA	105059321	105065389	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_105059477_105063184_105063310_105065351
ENSMUST00000033591.6	chrX	-	1744	6	FSM	ENSMUSG00000031239.6	ENSMUST00000033591.6	1744	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCATTCCCATCTCTAC	NA	NA	NA	NA	NA	NA	NA	NA	106446982	106440704	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_106441586_106441701_106441853_106442376_106442488_106442701_106442900_106443172_106443305_106446711
ENSMUST00000033597.9	chrX	-	1934	6	FSM	ENSMUSG00000031245.9	ENSMUST00000033597.9	1934	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTTTGCAATATTTCA	NA	NA	NA	NA	NA	NA	NA	NA	108057010	108048139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_108049678_108051767_108051903_108054159_108054214_108054462_108054493_108055027_108055052_108056857
ENSMUST00000033598.9	chrX	+	1278	4	FSM	ENSMUSG00000031246.15	ENSMUST00000033598.9	2882	4	0	1604	0	-1604	multi-exon	FALSE	canonical	NA	NA	NA	NA	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTATAGTCATGTTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	108138970	108204473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_108139244_108193520_108193707_108197911_108197993_108203735
ENSMUST00000033673.7	chrX	+	2030	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	0	532	0	-532	multi-exon	FALSE	canonical	NA	NA	NA	NA	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTACTTTCTCATCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	100473160	100491665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
ENSMUST00000033683.8	chrX	-	975	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12592	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTTGCTGTTGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	101233000	101228546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
ENSMUST00000033713.11	chrX	-	1026	4	FSM	ENSMUSG00000031347.13	ENSMUST00000033713.11	1026	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTCATTCTTTAAAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	71960462	71957309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293
ENSMUST00000033715.5	chrX	+	954	8	FSM	ENSMUSG00000031349.5	ENSMUST00000033715.5	2168	8	0	1214	0	-1214	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAACCAATCCCTTTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	71962162	72000906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_71962300_71969899_71970017_71973229_71973389_71992770_71992918_71996448_71996578_71998677_71998821_71999942_72000046_72000887
ENSMUST00000033717.9	chrX	-	2320	7	FSM	ENSMUSG00000031352.11	ENSMUST00000033717.9	2320	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTAGAGTGATTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	168103276	168094525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168103110
ENSMUST00000033734.14	chrX	+	1785	5	FSM	ENSMUSG00000031367.16	ENSMUST00000033734.14	1785	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTGGTGTGCTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	162692137	162716355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162715128
ENSMUST00000033737.15	chrX	-	1380	10	FSM	ENSMUSG00000031371.15	ENSMUST00000033737.15	1380	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	NA	NA	NA	NA	NA	NA	NA	72502650	72480920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72491565_72491663_72491797_72491957_72492416_72492509_72496604_72496667_72498472_72498541_72501579_72501696_72502440
ENSMUST00000033741.15	chrX	+	1086	8	FSM	ENSMUSG00000031375.18	ENSMUST00000033741.15	2419	8	31	1302	-2	-1298	multi-exon	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGCATCAATGACTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	72527238	72538237	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_72527369_72534384_72534637_72534923_72535037_72535553_72535768_72536328_72536440_72536568_72536663_72536805_72536945_72538204
ENSMUST00000033749.9	chrX	+	1599	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGTGCTTTTTTATATG	NA	NA	NA	NA	NA	NA	NA	NA	163052426	163156007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ENSMUST00000033749.9-1	chrX	+	1365	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	80	154	80	-154	multi-exon	FALSE	canonical	NA	NA	NA	NA	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAGGAAAACTACAA	NA	NA	NA	NA	NA	NA	NA	NA	163052506	163155853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ENSMUST00000033763.15	chrX	-	962	8	FSM	ENSMUSG00000031388.15	ENSMUST00000033763.15	962	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGGGTATGCTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	72965550	72960478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_72960802_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUST00000033770.13	chrX	-	1739	3	FSM	ENSMUSG00000031393.17	ENSMUST00000033770.13	1739	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTAGAGTTTCGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	73129296	73078893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_73080101_73080587_73080939_73129115
ENSMUST00000033775.9	chrX	-	2525	12	FSM	ENSMUSG00000031402.13	ENSMUST00000033775.9	2525	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	474	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGCCAGTCCAAGATTAT	NA	NA	NA	NA	NA	NA	NA	NA	74174622	74153338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_74154450_74155532_74155608_74155804_74156008_74157191_74157273_74157839_74157921_74159661_74159769_74161361_74161559_74165040_74165110_74167501_74167588_74168976_74169056_74169342_74169487_74174330
ENSMUST00000033797.13	chrX	-	1996	4	FSM	ENSMUSG00000031422.17	ENSMUST00000033797.13	1996	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	NA	NA	NA	NA	NA	NA	NA	135642410	135633690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135642141
ENSMUST00000033809.4	chrX	+	1072	7	FSM	ENSMUSG00000031432.4	ENSMUST00000033809.4	1965	7	0	893	0	-402	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTTCCTTTATAACATAAC	NA	NA	NA	NA	NA	NA	NA	NA	139357361	139375996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
ENSMUST00000033824.8	chr8	+	2229	9	FSM	ENSMUSG00000031447.8	ENSMUST00000033824.8	2229	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACGTGTCCTTCTGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	13209160	13225338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_13209435_13215848_13215968_13217157_13217378_13217806_13217966_13221204_13221384_13222540_13222661_13223626_13223694_13223779_13223951_13224418
ENSMUST00000033839.9	chr8	-	793	4	FSM	ENSMUSG00000031458.9	ENSMUST00000033839.9	793	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGTATGCTCTGTCTGCG	NA	NA	NA	NA	NA	NA	NA	NA	13940268	13934793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_13935202_13935665_13935882_13937759_13937827_13940166
ENSMUST00000033866.9	chr8	+	1461	14	FSM	ENSMUSG00000031479.10	ENSMUST00000033866.9	3574	14	0	2113	0	-2113	multi-exon	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGGGATATAACTTGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	22682824	22708746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_22682983_22688913_22688983_22692289_22692361_22695682_22695798_22696792_22696883_22697872_22697960_22700284_22700318_22700404_22700483_22701553_22701689_22703510_22703577_22706527_22706593_22707140_22707226_22708227_22708305_22708414
ENSMUST00000033875.10	chr8	+	1368	8	FSM	ENSMUSG00000031485.16	ENSMUST00000033875.10	3603	8	86	2149	43	-584	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTTTAGTAAAGACTTGG	NA	NA	NA	NA	NA	NA	NA	NA	27532668	27544011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313
ENSMUST00000033880.7	chr8	+	821	3	FSM	ENSMUSG00000031490.7	ENSMUST00000033880.7	1997	3	0	1176	0	-1176	multi-exon	FALSE	canonical	NA	NA	NA	NA	351	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCACATTTACCCTAGGC	NA	NA	NA	NA	NA	NA	NA	NA	27750356	27765526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_27750579_27763350_27763531_27765107
ENSMUST00000033900.7	chr8	-	1392	2	FSM	ENSMUSG00000031504.7	ENSMUST00000033900.7	1392	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTTCTTGGGAATGTT	NA	NA	NA	NA	NA	NA	NA	NA	11528710	11503517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_11504527_11528327
ENSMUST00000033913.11	chr8	-	1249	7	FSM	ENSMUSG00000031516.12	ENSMUST00000033913.11	1249	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	540	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGCTGCCTCAATTTCC	NA	NA	NA	NA	NA	NA	NA	NA	34575950	34557576	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_34557997_34559664_34559808_34560782_34560831_34562037_34562127_34564342_34564449_34573495_34573561_34575572
ENSMUST00000033918.4	chr8	+	1143	7	FSM	ENSMUSG00000031519.5	ENSMUST00000033918.4	1585	7	0	442	0	-442	multi-exon	FALSE	canonical	NA	NA	NA	NA	488	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATTTTGGTTTCTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	55003365	55040435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_55003676_55033860_55033941_55036585_55036694_55037693_55037845_55038013_55038149_55038805_55038998_55040268
ENSMUST00000033934.5	chr8	+	1117	7	FSM	ENSMUSG00000031533.5	ENSMUST00000033934.5	1515	7	37	361	37	-361	multi-exon	FALSE	canonical	NA	NA	NA	NA	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATATCTGAGTGTTAAAC	NA	NA	NA	NA	NA	NA	NA	NA	22901413	22919320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362_22914437_22917763_22917908_22919196
ENSMUST00000033935.16	chr8	-	888	4	FSM	ENSMUSG00000031534.16	ENSMUST00000033935.16	1402	4	27	487	0	-487	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAGGATACAGTGAAAAATA	NA	NA	NA	NA	NA	NA	NA	NA	22966871	22953117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_22953392_22961464_22961590_22963457_22963597_22966521
ENSMUST00000033938.7	chr8	-	1201	14	FSM	ENSMUSG00000031536.7	ENSMUST00000033938.7	1201	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCTTAACAAATGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	23143434	23118141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_23118386_23120358_23120499_23121470_23121536_23127083_23127171_23129949_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23135060_23135111_23137428_23137488_23138197_23138273_23140504_23140572_23143075_23143134_23143329
ENSMUST00000033941.7	chr8	+	2525	14	FSM	ENSMUSG00000031538.7	ENSMUST00000033941.7	2525	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACTGGTGCATATCCATG	NA	NA	NA	NA	NA	NA	NA	NA	23247762	23272860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_23247845_23257095_23257184_23258461_23258505_23261709_23261848_23262221_23262333_23262651_23262827_23263632_23263725_23265580_23265756_23266806_23266893_23268118_23268315_23268428_23268566_23268670_23268812_23270441_23270606_23271963
ENSMUST00000033983.6	chr8	-	1902	10	FSM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGTCTTGAGAATTCTG	NA	NA	NA	NA	NA	NA	NA	NA	31658792	31649490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
ENSMUST00000033992.9	chr8	+	1784	13	FSM	ENSMUSG00000031584.17	ENSMUST00000033992.9	2673	13	0	889	0	-889	multi-exon	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGGTCACCCTGCGCTG	NA	NA	NA	NA	NA	NA	NA	NA	34143265	34187302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_34143808_34159180_34159208_34159920_34160010_34161550_34161621_34164114_34164263_34170290_34170346_34171492_34171593_34172620_34172708_34175571_34175731_34179368_34179481_34183826_34183959_34185026_34185161_34187173
ENSMUST00000033994.15	chr8	-	2375	8	FSM	ENSMUSG00000031586.18	ENSMUST00000033994.15	2375	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACATGATTTGTCTGACA	NA	NA	NA	NA	NA	NA	NA	NA	34419834	34272674	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_34274215_34279419_34279524_34285109_34285179_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
ENSMUST00000033999.8	chr8	-	1039	9	FSM	ENSMUSG00000031590.9	ENSMUST00000033999.8	1039	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGTTCTCGAGTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	41870111	41850495	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_41850682_41851992_41852104_41852601_41852694_41853798_41853904_41860681_41860797_41863300_41863359_41864259_41864386_41867839_41867911_41869936
ENSMUST00000034004.10	chr8	+	1548	6	FSM	ENSMUSG00000031595.10	ENSMUST00000034004.10	1548	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	807	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAAGTACTTGTGTCATT	NA	NA	NA	NA	NA	NA	NA	NA	41379269	41443822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_41379463_41391126_41391425_41429987_41430140_41438570_41438865_41441841_41441982_41443351
ENSMUST00000034012.10	chr8	-	2615	7	FSM	ENSMUSG00000031601.17	ENSMUST00000034012.10	2615	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGTGACTGATGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	40964795	40945580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
ENSMUST00000034015.11	chr8	-	2044	6	FSM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	65186826	65171172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180943_65186541
ENSMUST00000034022.4	chr8	-	1178	4	FSM	ENSMUSG00000031609.4	ENSMUST00000034022.4	1178	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	666	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTGCTTCAGCCTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	57940894	57935740	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_57936085_57938075_57938175_57938543_57938670_57940285
ENSMUST00000034053.7	chr8	+	861	7	FSM	ENSMUSG00000031636.8	ENSMUST00000034053.7	1604	7	59	684	0	-150	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGCTTTGTGTGTGCCGA	NA	NA	NA	NA	NA	NA	NA	NA	46338556	46371901	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_46338710_46349784_46349937_46353511_46353597_46361505_46361694_46368165_46368297_46370494_46370607_46371861
ENSMUST00000034058.14	chr8	+	1750	5	FSM	ENSMUSG00000031641.15	ENSMUST00000034058.14	4309	5	35	2524	35	-2524	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACTCTGTAGCCCTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	61940802	61957204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_61941025_61942973_61943095_61944578_61944713_61948101_61948237_61956066
ENSMUST00000034094.11	chr8	+	1688	3	FSM	ENSMUSG00000031669.11	ENSMUST00000034094.11	2519	3	0	831	0	467	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGTGGGCATCACTGTAAA	NA	NA	NA	NA	NA	NA	NA	NA	96360080	96370857	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_96360412_96364437_96364672_96369734
ENSMUST00000034096.6	chr8	+	1128	7	FSM	ENSMUSG00000031671.12	ENSMUST00000034096.6	1707	7	281	298	281	-298	multi-exon	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAAGCCTTACAGGTCCG	NA	NA	NA	NA	NA	NA	NA	NA	96442789	96445340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_96442899_96442980_96443123_96443234_96443430_96443548_96443670_96444548_96444730_96444820_96444964_96445103
ENSMUST00000034097.8	chr8	-	2530	10	FSM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1392	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGTCTGCTTTTCTACT	NA	NA	NA	NA	NA	NA	NA	NA	96615175	96590761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
ENSMUST00000034131.10	chr8	-	2515	17	FSM	ENSMUSG00000031696.10	ENSMUST00000034131.10	3474	17	105	854	105	-854	multi-exon	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAGTGAAGAAACAGAACAA	NA	NA	NA	NA	NA	NA	NA	NA	86026326	85987874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
ENSMUST00000034136.12	chr8	+	2101	12	FSM	ENSMUSG00000031700.12	ENSMUST00000034136.12	3639	12	33	1505	33	-1505	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGAGATCCATGAAATCA	NA	NA	NA	NA	NA	NA	NA	NA	86219237	86252684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_86219319_86219533_86219799_86229893_86229984_86232207_86232317_86235807_86235939_86238741_86238986_86242786_86242867_86244605_86244743_86246076_86246252_86247967_86248124_86249884_86249998_86252164
ENSMUST00000034141.18	chr8	+	2859	15	FSM	ENSMUSG00000047866.21	ENSMUST00000034141.18	2859	15	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAATTCTGGTCTCCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	87350671	87443259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_87351045_87358013_87358249_87360496_87360629_87361424_87361548_87363106_87363271_87364530_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
ENSMUST00000034159.8	chr8	+	658	4	FSM	ENSMUSG00000031723.9	ENSMUST00000034159.8	1890	4	0	1232	0	-704	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACGTGCCCAAATATGACC	NA	NA	NA	NA	NA	NA	NA	NA	110292523	110299451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_110292696_110295521_110295730_110298002_110298155_110299325
ENSMUST00000034171.9	chr8	+	3692	23	FSM	ENSMUSG00000031731.17	ENSMUST00000034171.9	3692	23	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTCCCACATTGTACTTT	NA	NA	NA	NA	NA	NA	NA	NA	110505537	110587990	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_110505595_110529578_110529783_110545549_110545675_110553225_110553368_110554869_110554967_110556230_110556308_110559348_110559445_110559821_110559903_110560099_110560199_110564374_110564431_110565550_110565665_110569984_110570126_110570956_110571012_110576252_110576376_110577672_110577763_110578331_110578460_110580173_110580279_110581297_110581440_110581614_110581742_110581977_110582086_110582204_110582366_110585430_110585530_110586725
ENSMUST00000034171.9-1	chr8	+	3276	23	FSM	ENSMUSG00000031731.17	ENSMUST00000034171.9	3692	23	-352	768	0	-259	multi-exon	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCATCTCTGTGGACT	NA	NA	NA	NA	NA	NA	NA	NA	110505185	110587222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_110505595_110529578_110529783_110545549_110545675_110553225_110553368_110554869_110554967_110556230_110556308_110559348_110559445_110559821_110559903_110560099_110560199_110564374_110564431_110565550_110565665_110569984_110570126_110570956_110571012_110576252_110576376_110577672_110577763_110578331_110578460_110580173_110580279_110581297_110581440_110581614_110581742_110581977_110582086_110582204_110582366_110585430_110585530_110586725
ENSMUST00000034184.12	chr8	+	2450	3	FSM	ENSMUSG00000031737.12	ENSMUST00000034184.12	2450	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGCCACTCATTACTTC	NA	NA	NA	NA	NA	NA	NA	NA	93084376	93088084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_93085058_93086164_93086571_93086721
ENSMUST00000034187.9	chr8	+	3078	13	FSM	ENSMUSG00000031740.9	ENSMUST00000034187.9	3078	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGGCTCTGTTTTAGC	NA	NA	NA	NA	NA	NA	NA	NA	93553918	93580048	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_93554406_93557248_93557476_93558312_93558462_93559391_93559521_93559696_93559871_93562596_93562771_93563533_93563708_93565880_93566037_93567017_93567160_93570447_93570585_93572708_93572869_93576753_93576864_93579189
ENSMUST00000034187.9-0	chr8	+	2608	13	FSM	ENSMUSG00000031740.9	ENSMUST00000034187.9	3078	13	0	470	0	-470	multi-exon	FALSE	canonical	NA	NA	NA	NA	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTATGACCTTTTTATGGC	NA	NA	NA	NA	NA	NA	NA	NA	93553918	93579578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_93554406_93557248_93557476_93558312_93558462_93559391_93559521_93559696_93559871_93562596_93562771_93563533_93563708_93565880_93566037_93567017_93567160_93570447_93570585_93572708_93572869_93576753_93576864_93579189
ENSMUST00000034214.8	chr8	+	355	3	FSM	ENSMUSG00000031762.8	ENSMUST00000034214.8	511	3	0	156	0	-15	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTGTGCCTGAAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	94899291	94900040	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_94899504_94899754_94899821_94899963
ENSMUST00000034215.8	chr8	+	549	3	FSM	ENSMUSG00000031765.9	ENSMUST00000034215.8	549	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	94905709	94906955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_94905967_94906450_94906517_94906729
ENSMUST00000034228.16	chr8	+	2063	6	FSM	ENSMUSG00000031776.18	ENSMUST00000034228.16	2063	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1545	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGATGTGCATTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	95393227	95401053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_95393530_95394224_95394287_95396948_95397056_95397922_95398009_95398689_95398787_95399644
ENSMUST00000034230.7	chr8	+	477	3	FSM	ENSMUSG00000031778.14	ENSMUST00000034230.7	3315	3	216	2622	21	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCCAGGGGGACCATGG	NA	NA	NA	NA	NA	NA	NA	NA	95498852	95506433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_95498963_95504655_95504777_95506187
ENSMUST00000034234.15	chr8	+	1789	9	FSM	ENSMUSG00000031782.16	ENSMUST00000034234.15	1789	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTTGTTTTGTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	95564948	95581523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_95565126_95569245_95569397_95571404_95571541_95576752_95576896_95577142_95577228_95578478_95578584_95579742_95579899_95580232_95580287_95580741
ENSMUST00000034244.9	chr8	+	849	6	FSM	ENSMUSG00000031791.9	ENSMUST00000034244.9	2124	6	18	1257	18	-150	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGCCAAGGAAGAGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	73325934	73339869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_73326072_73333406_73333564_73333803_73333989_73335028_73335117_73338543_73338662_73339705
ENSMUST00000034249.8	chr8	-	1295	6	FSM	ENSMUSG00000031796.8	ENSMUST00000034249.8	1295	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTTTACTTTTTTATA	NA	NA	NA	NA	NA	NA	NA	NA	96161497	96146876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96151244_96151325_96161115
ENSMUST00000034270.17	chr8	+	2532	4	FSM	ENSMUSG00000031812.17	ENSMUST00000034270.17	2532	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGTACAATTTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	122317099	122325499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_122317304_122320228_122320285_122322724_122322832_122323334
ENSMUST00000034270.17-0	chr8	+	2171	4	FSM	ENSMUSG00000031812.17	ENSMUST00000034270.17	2532	4	0	361	0	-361	multi-exon	FALSE	canonical	NA	NA	NA	NA	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTGTCAGCAGGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	122317099	122325138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_122317304_122320228_122320285_122322724_122322832_122323334
ENSMUST00000034270.17-1	chr8	+	2155	4	FSM	ENSMUSG00000031812.17	ENSMUST00000034270.17	2532	4	116	261	0	-261	multi-exon	FALSE	canonical	NA	NA	NA	NA	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACAAAAGATCTGAGAATG	NA	NA	NA	NA	NA	NA	NA	NA	122317215	122325238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_122317304_122320228_122320285_122322724_122322832_122323334
ENSMUST00000034276.13	chr8	+	745	5	FSM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	NA	NA	NA	NA	NA	NA	NA	121394960	121400946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_121395095_121396047_121396122_121399463_121399632_121399959_121400092_121400709
ENSMUST00000034285.14	chr8	-	1596	4	FSM	ENSMUSG00000031827.14	ENSMUST00000034285.14	1596	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGAGTTGGGTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	120567283	120535960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_120537095_120549392_120549551_120566880_120566964_120567062
ENSMUST00000034287.10	chr8	+	2181	5	FSM	ENSMUSG00000031828.10	ENSMUST00000034287.10	2181	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTGTTTGAATACTTACA	NA	NA	NA	NA	NA	NA	NA	NA	120589010	120603734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_120589187_120591741_120591819_120596360_120597432_120601113_120601272_120603035
ENSMUST00000034301.12	chr8	+	767	5	FSM	ENSMUSG00000031840.15	ENSMUST00000034301.12	1363	5	0	596	0	-562	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCTCACCGACCAGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	71207359	71210685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71207513_71208502_71208731_71209093_71209213_71209783_71209909_71210543
ENSMUST00000034303.3	chr8	-	1068	5	FSM	ENSMUSG00000031843.3	ENSMUST00000034303.3	1068	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTTGAAGTAATTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	118528682	118518383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_118519058_118519417_118519516_118521319_118521411_118525782_118525896_118528590
ENSMUST00000034304.9-1	chr8	+	922	5	FSM	ENSMUSG00000031844.9	ENSMUST00000034304.9	1320	5	183	215	183	-37	multi-exon	FALSE	canonical	NA	NA	NA	NA	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTACCCAGGGCGAATGG	NA	NA	NA	NA	NA	NA	NA	NA	118428825	118485551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_118429003_118461232_118461446_118469070_118469257_118479924_118480063_118485343
ENSMUST00000034311.15	chr8	+	440	5	FSM	ENSMUSG00000031848.16	ENSMUST00000034311.15	925	5	137	348	0	-115	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCCAGCCCGAGAAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	71126034	71131054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71126108_71129204_71129247_71130427_71130527_71130603_71130785_71131009
ENSMUST00000034313.13	chr8	+	1155	5	FSM	ENSMUSG00000031851.15	ENSMUST00000034313.13	1155	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGAGTCCTTGTGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	126460941	126474974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126471974_126472185_126474436
ENSMUST00000034328.13	chr8	+	4201	17	FSM	ENSMUSG00000031864.17	ENSMUST00000034328.13	4201	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAGGCCTAATGCCATGT	NA	NA	NA	NA	NA	NA	NA	NA	69246580	69282062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
ENSMUST00000034343.5	chr8	+	1616	5	FSM	ENSMUSG00000031875.8	ENSMUST00000034343.5	1616	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGAGTGCGCCTGACT	NA	NA	NA	NA	NA	NA	NA	NA	105067225	105074304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_105067528_105070389_105070546_105071408_105071505_105071903_105072025_105073363
ENSMUST00000034369.10	chr8	-	1311	8	FSM	ENSMUSG00000031897.10	ENSMUST00000034369.10	1311	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTAAACAGAAGGCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	106665076	106662370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497_106663614_106663872_106664014_106664125_106664224_106664310_106664399_106664586
ENSMUST00000034377.8	chr8	+	983	6	FSM	ENSMUSG00000031903.8	ENSMUST00000034377.8	2706	6	0	1723	0	-1720	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGGGACATCGGTTTCGAA	NA	NA	NA	NA	NA	NA	NA	NA	106877030	106889624	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_106877246_106881499_106881657_106886794_106886914_106887212_106887312_106887715_106887941_106889456
ENSMUST00000034382.8	chr8	+	1204	4	FSM	ENSMUSG00000031907.10	ENSMUST00000034382.8	2632	4	9	1419	0	-1259	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGGGGAAAAACCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	107141979	107151102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_107142403_107145702_107145830_107146146_107146243_107150544
ENSMUST00000034392.13	chr8	+	1963	5	FSM	ENSMUSG00000031917.13	ENSMUST00000034392.13	3036	5	29	1044	5	-1044	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTCAGAGGGCAGAAAACA	NA	NA	NA	NA	NA	NA	NA	NA	107783537	107786519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008
ENSMUST00000034396.14	chr9	+	2785	15	FSM	ENSMUSG00000031918.17	ENSMUST00000034396.14	3788	15	787	216	16	-216	multi-exon	FALSE	canonical	NA	NA	NA	NA	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTCACATGGACACTTT	NA	NA	NA	NA	NA	NA	NA	NA	13660492	13717561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_13660697_13693572_13693679_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
ENSMUST00000034401.15	chr9	+	1570	4	FSM	ENSMUSG00000031925.18_ENSMUSG00002075655.1	ENSMUST00000034401.15	2098	4	-420	948	0	-948	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCATCCAACCAAAGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	13532521	13617691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_13532972_13608469_13608674_13613539_13613652_13616887
ENSMUST00000034415.6	chr9	+	1148	7	FSM	ENSMUSG00000031939.17	ENSMUST00000034415.6	1148	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTCTTAAGTGCTTAGCC	NA	NA	NA	NA	NA	NA	NA	NA	15217509	15223400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223204
ENSMUST00000034428.8	chr8	+	925	4	FSM	ENSMUSG00000031950.8	ENSMUST00000034428.8	1677	4	55	697	25	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGGTGTGACCATGTCCG	NA	NA	NA	NA	NA	NA	NA	NA	112667389	112679547	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946
ENSMUST00000034431.3	chr8	-	3878	3	FSM	ENSMUSG00000031953.3	ENSMUST00000034431.3	3878	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGCGTTGGGAACCTT	NA	NA	NA	NA	NA	NA	NA	NA	112603382	112589669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_112593129_112596219_112596391_112603134
ENSMUST00000034432.7	chr8	-	1178	7	FSM	ENSMUSG00000031954.7	ENSMUST00000034432.7	1178	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1886	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGGTTGGTGAGAGTAA	NA	NA	NA	NA	NA	NA	NA	NA	112580923	112495122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_112495420_112505882_112506042_112557501_112557622_112566989_112567118_112568414_112568623_112571725_112571844_112580775
ENSMUST00000034441.8	chr8	+	3127	21	FSM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	14	2609	14	-517	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGCAGGTTTCAGGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	111760547	111781687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ENSMUST00000034453.6	chr8	-	1446	7	FSM	ENSMUSG00000031972.6	ENSMUST00000034453.6	1446	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAACTGTGTGTGGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	124621490	124618507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_124618892_124618967_124619150_124619282_124619475_124619571_124619734_124619884_124620210_124620307_124620449_124621430
ENSMUST00000034460.11-1	chr8	+	2323	18	FSM	ENSMUSG00000031979.18	ENSMUST00000034460.11	2825	18	52	450	52	-450	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTACCTCCGCCCACTTAT	NA	NA	NA	NA	NA	NA	NA	NA	125247557	125278297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_125247691_125252369_125252532_125253838_125253905_125255714_125255796_125256636_125256741_125259167_125259277_125259952_125260133_125262137_125262263_125264521_125264649_125267711_125267852_125269627_125269690_125270748_125270901_125271867_125272042_125272758_125272832_125273289_125273433_125275255_125275396_125276905_125277090_125278129
ENSMUST00000034465.9	chr8	-	1105	7	FSM	ENSMUSG00000031984.9	ENSMUST00000034465.9	2340	7	0	1235	0	-1235	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAGTTTGCAGGCTGGCG	NA	NA	NA	NA	NA	NA	NA	NA	125589859	125566461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
ENSMUST00000034512.7	chr9	-	2526	4	FSM	ENSMUSG00000032014.7	ENSMUST00000034512.7	2526	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAAGGCAAAAGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	43151208	43132531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_43134137_43135193_43135375_43136172_43136308_43150603
ENSMUST00000034534.13	chr9	+	2764	8	FSM	ENSMUSG00000032035.17	ENSMUST00000034534.13	5080	8	27	2289	0	256	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCAGTTCTCCTCTACTTT	NA	NA	NA	NA	NA	NA	NA	NA	32607344	32666827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_32607762_32639970_32640091_32641350_32641552_32644244_32644323_32645235_32645485_32649394_32649656_32664094_32664214_32665508
ENSMUST00000034537.8	chr9	-	2095	11	FSM	ENSMUSG00000032038.8	ENSMUST00000034537.8	2095	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	433	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTTGTGGGGCTCTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	35028169	34957871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_34958816_34959114_34959259_34963535_34963680_34964373_34964564_34964667_34964764_34965358_34965420_34965730_34965829_34965997_34966079_34966493_34966579_34966869_34966946_35027993
ENSMUST00000034539.12	chr9	-	1274	6	FSM	ENSMUSG00000032040.16	ENSMUST00000034539.12	1274	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTGTAGCCCAGTAG	NA	NA	NA	NA	NA	NA	NA	NA	35087357	35035703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_35036141_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
ENSMUST00000034543.5	chr9	+	1207	7	FSM	ENSMUSG00000032044.5	ENSMUST00000034543.5	1821	7	0	614	0	-614	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTGCTAACTTCTCACTT	NA	NA	NA	NA	NA	NA	NA	NA	35179160	35186647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_35179375_35179697_35179864_35181260_35181463_35183829_35183924_35183997_35184143_35184763_35184862_35186359
ENSMUST00000034552.8	chr9	-	875	4	FSM	ENSMUSG00000032051.10	ENSMUST00000034552.8	875	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	311	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTGTGTTTGGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	51874846	51854605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_51854950_51859876_51860007_51868372_51868498_51874570
ENSMUST00000034562.9	chr9	+	946	3	FSM	ENSMUSG00000032060.11	ENSMUST00000034562.9	946	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGATTGAAAATCTGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	50664206	50667843	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_50664778_50665811_50665935_50667591
ENSMUST00000034564.4	chr9	-	1125	4	FSM	ENSMUSG00000032062.4	ENSMUST00000239417.2	1242	4	10	107	10	-107	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTAACAGCCACGAGACC	NA	NA	NA	NA	NA	NA	NA	NA	50657811	50651097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_50652050_50652595_50652661_50653560_50653599_50657741
ENSMUST00000034570.7	chr9	-	1046	6	FSM	ENSMUSG00000032067.7	ENSMUST00000034570.7	1046	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	NA	NA	NA	NA	NA	NA	NA	NA	50439951	50432916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439856
ENSMUST00000034590.4	chr9	-	1595	5	FSM	ENSMUSG00000032085.6	ENSMUST00000034590.4	1595	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATATTAACAATTAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	45847356	45840916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_45841814_45842130_45842234_45842597_45842776_45842879_45843072_45847131
ENSMUST00000034689.8	chr9	+	3843	4	FSM	ENSMUSG00000032171.8	ENSMUST00000034689.8	3843	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1887	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTTTGTCAGAGGGATC	NA	NA	NA	NA	NA	NA	NA	NA	20563390	20577880	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_20563494_20566657_20566877_20573593_20573705_20574470
ENSMUST00000034698.9	chr9	-	1378	4	FSM	ENSMUSG00000032180.12	ENSMUST00000034698.9	1378	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGCCTGGTGACTGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	21421548	21418850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_21419688_21420226_21420411_21420549_21420648_21421289
ENSMUST00000034700.15	chr9	-	1636	8	FSM	ENSMUSG00000032182.16	ENSMUST00000034700.15	2174	8	56	482	0	-478	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGAGGTCCCTGCGAGG	NA	NA	NA	NA	NA	NA	NA	NA	21504068	21500459	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823
ENSMUST00000034702.6	chr9	+	973	3	FSM	ENSMUSG00000032184.6	ENSMUST00000034702.6	1189	3	18	198	18	-198	multi-exon	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGATCCTAAATGTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	75533040	75544855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_75533320_75542667_75543000_75544493
ENSMUST00000034738.14	chr9	+	537	6	FSM	ENSMUSG00000032215.16	ENSMUST00000034738.14	1543	6	55	951	55	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTTCGGCCCCTAAGTTA	NA	NA	NA	NA	NA	NA	NA	NA	73020784	73029664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_73020866_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
ENSMUST00000034746.10	chr9	+	5250	10	FSM	ENSMUSG00000032221.15	ENSMUST00000034746.10	5250	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACATTGTTCTTTATATT	NA	NA	NA	NA	NA	NA	NA	NA	72345816	72369307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_72345962_72346521_72346744_72352124_72352253_72353488_72353592_72355810_72356041_72356432_72356650_72356733_72356842_72359862_72360121_72364059_72364186_72365594
ENSMUST00000034754.12	chr9	+	1337	11	FSM	ENSMUSG00000011958.18	ENSMUST00000034754.12	2464	11	51	1076	2	126	multi-exon	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGTACAAGGGACTGTT	NA	NA	NA	NA	NA	NA	NA	NA	69896798	69914523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69911587_69911624_69914345
ENSMUST00000034756.15	chr9	+	1447	13	FSM	ENSMUSG00000032231.15	ENSMUST00000034756.15	1447	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGTTGCCTTTGCTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	69360901	69399077	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_69361022_69371741_69371807_69374572_69374673_69383334_69383430_69386959_69387074_69390255_69390347_69391061_69391142_69392479_69392540_69393751_69393846_69394834_69394931_69395336_69395396_69396933_69397057_69398727
ENSMUST00000034763.10	chr9	-	865	6	FSM	ENSMUSG00000032239.11	ENSMUST00000034763.10	1134	6	178	91	178	71	multi-exon	FALSE	canonical	NA	NA	NA	NA	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGGTGTGGTAACTCAT	NA	NA	NA	NA	NA	NA	NA	NA	22379466	22359697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_22360151_22361097_22361160_22365074_22365167_22368668_22368799_22370006_22370038_22379369
ENSMUST00000034808.12	chr9	-	1043	3	FSM	ENSMUSG00000032271.14	ENSMUST00000034808.12	1043	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCAGTGCTCACTGTATG	NA	NA	NA	NA	NA	NA	NA	NA	48516453	48503176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_48503663_48514653_48514862_48516104
ENSMUST00000034827.10	chr9	+	924	1	FSM	ENSMUSG00000032288.10	ENSMUST00000034827.10	924	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	635	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTTGTCTGGTCGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	56844758	56845682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_56844800_56845700
ENSMUST00000034846.7	chr9	-	4152	3	FSM	ENSMUSG00000032300.8	ENSMUST00000034846.7	4152	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGATCTAGCTTTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	57169895	57160399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_57161613_57163668_57166424_57169711
ENSMUST00000034856.15	chr9	-	1780	8	FSM	ENSMUSG00000032306.15	ENSMUST00000034856.15	1780	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTCAGCCTTTGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	57460046	57451538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_57452222_57452477_57452687_57453676_57453851_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
ENSMUST00000034859.15	chr9	+	2112	7	FSM	ENSMUSG00000032309.16	ENSMUST00000034859.15	2112	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	NA	NA	NA	NA	NA	NA	NA	55116208	55131717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
ENSMUST00000034866.9	chr9	-	1392	12	FSM	ENSMUSG00000032314.15	ENSMUST00000034866.9	1392	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTACTATCAGAAACATGC	NA	NA	NA	NA	NA	NA	NA	NA	55419527	55361791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_55362047_55368903_55368985_55372077_55372144_55389556_55389640_55392553_55392623_55393985_55394088_55394683_55394795_55396113_55396214_55402845_55402929_55403025_55403108_55407301_55407449_55419314
ENSMUST00000034869.11	chr9	+	1395	6	FSM	ENSMUSG00000032318.13	ENSMUST00000034869.11	1854	6	59	400	59	-400	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGGACATTCTGGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	55448490	55453064	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_55448623_55449383_55449574_55449680_55449944_55451359_55451644_55452224_55452393_55452706
ENSMUST00000034876.10	chr9	-	1716	7	FSM	ENSMUSG00000032324.12	ENSMUST00000034876.10	1716	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGTACATTTTAATTATT	NA	NA	NA	NA	NA	NA	NA	NA	56068341	56043167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_56044020_56052772_56052857_56053058_56053212_56053797_56053900_56054369_56054445_56054670_56054863_56068083
ENSMUST00000034878.12	chr9	-	3658	7	FSM	ENSMUSG00000032328.13	ENSMUST00000034878.12	3658	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCGTGCTGTTTATGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	79700712	79676224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_79678762_79681374_79681585_79682383_79682534_79683434_79683523_79684505_79684614_79687822_79687931_79700255
ENSMUST00000034879.5	chr9	+	2360	10	FSM	ENSMUSG00000032329.5	ENSMUST00000034879.5	3778	10	35	1383	0	-1383	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAATCTATGAAATCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	56325927	56402837	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56397105_56397249_56401816
ENSMUST00000034881.8	chr9	-	659	4	FSM	ENSMUSG00000032330.8	ENSMUST00000034881.8	659	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3347	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTCAGCAGTTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	79667160	79662642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_79662888_79663558_79663644_79665771_79665862_79666921
ENSMUST00000034883.7	chr9	+	1321	7	FSM	ENSMUSG00000032333.7	ENSMUST00000034883.7	1984	7	28	635	28	-31	multi-exon	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGAGAAGCCTCTTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	58160474	58169168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_58160683_58162216_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
ENSMUST00000034902.12	chr9	-	870	7	FSM	ENSMUSG00000057933.11	ENSMUST00000034902.12	870	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	239	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	78254440	78238299	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78254370
ENSMUST00000034904.14	chr9	+	1100	8	FSM	ENSMUSG00000032349.14	ENSMUST00000034904.14	2782	8	70	1612	70	-1612	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATCTGCAGTGTGACTCA	NA	NA	NA	NA	NA	NA	NA	NA	77824715	77890189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946
ENSMUST00000034916.10	chr5	+	967	1	FSM	ENSMUSG00000046440.10	ENSMUST00000034916.10	967	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGGGTGTGCTCGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	138503074	138504041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_138503100_138504000
ENSMUST00000034920.11	chr9	-	2310	22	FSM	ENSMUSG00000058444.9	ENSMUST00000034920.11	2310	22	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGTTTGTCTCAGCAAGT	NA	NA	NA	NA	NA	NA	NA	NA	63285184	63071049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_63071473_63101483_63101530_63104592_63104655_63124274_63124308_63124620_63124648_63142570_63142601_63164258_63164331_63169425_63169477_63170395_63170470_63188300_63188350_63193680_63193743_63200805_63200888_63200977_63201047_63210402_63210443_63229484_63229550_63237189_63237239_63245366_63245435_63246362_63246404_63250668_63250739_63265274_63265343_63279018_63279068_63284404
ENSMUST00000034929.7	chr9	-	2031	6	FSM	ENSMUSG00000032370.9	ENSMUST00000034929.7	2031	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGGCACTTTTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	66882766	66862674	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_66863483_66874960_66875127_66877863_66878219_66878457_66878649_66881999_66882067_66882322
ENSMUST00000034932.14	chr9	+	1874	8	FSM	ENSMUSG00000032372.15	ENSMUST00000034932.14	1874	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGTGTGTACTTTCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	92157654	92179784	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_92158067_92164164_92164246_92169624_92169858_92171715_92171759_92172691_92172913_92173029_92173192_92177567_92177730_92179224
ENSMUST00000034945.6	chr9	+	659	5	FSM	ENSMUSG00000032381.6	ENSMUST00000034945.6	1240	5	0	581	0	-581	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGGAGAACCCCAACCT	NA	NA	NA	NA	NA	NA	NA	NA	66033892	66045656	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_66034253_66039808_66039974_66040713_66040764_66043583_66043630_66045618
ENSMUST00000034964.7	chr9	+	985	8	FSM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	0	226	0	-226	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTATGTGGATTCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	64188888	64211848	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUST00000034965.8	chr9	+	1228	3	FSM	ENSMUSG00000032398.8	ENSMUST00000034965.8	1228	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACTGCCAGCAACCTCT	NA	NA	NA	NA	NA	NA	NA	NA	64086555	64090414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_64086703_64087780_64087871_64089423
ENSMUST00000035007.10	chr9	+	1136	4	FSM	ENSMUSG00000032434.10	ENSMUST00000035007.10	3383	4	0	2247	0	-2247	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACAGAAAGCGTGTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	114560240	114576165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_114560442_114566250_114566428_114569126_114569226_114575506
ENSMUST00000035009.16	chr9	-	993	5	FSM	ENSMUSG00000032436.18	ENSMUST00000035009.16	993	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTCCTTATTGCATGAGA	NA	NA	NA	NA	NA	NA	NA	NA	114610917	114585903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_114586360_114587872_114587955_114590974_114591074_114592286_114592461_114610735
ENSMUST00000035014.8	chr9	-	3476	7	FSM	ENSMUSG00000032440.14	ENSMUST00000035014.8	3476	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGAGTTCAACCCCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	116004428	115917996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_115919626_115922013_115922142_115934101_115934244_115938571_115939372_115958883_115959075_115960612_115960782_116004011
ENSMUST00000035034.10	chr9	-	1197	8	FSM	ENSMUSG00000032459.10	ENSMUST00000035034.10	1197	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	338	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTGTAATTCGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	98483713	98470782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_98470980_98472087_98472197_98474607_98474754_98476125_98476210_98476722_98476867_98478872_98479038_98480187_98480352_98483525
ENSMUST00000035065.9	chr1	+	3004	10	FSM	ENSMUSG00000032487.9	ENSMUST00000035065.9	4453	10	0	1449	0	-1449	multi-exon	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTTGCCAGGCTGAACT	NA	NA	NA	NA	NA	NA	NA	NA	149975781	149982529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_149976027_149976724_149976842_149976963_149977108_149977741_149977886_149978346_149978529_149979425_149979510_149979619_149979867_149980033_149980321_149980692_149980841_149981123
ENSMUST00000035069.14	chr9	-	1223	5	FSM	ENSMUSG00000032491.15	ENSMUST00000035069.14	1223	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	NA	NA	NA	NA	NA	NA	NA	NA	110453520	110450202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_110450806_110450907_110451051_110451139_110451330_110452154_110452304_110453382
ENSMUST00000035094.14	chr9	+	1372	6	FSM	ENSMUSG00000042787.16	ENSMUST00000035094.14	3832	6	44	2416	44	-2416	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGATGAGGCTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	119274052	119292167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_119274217_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
ENSMUST00000035099.9	chr9	-	3906	9	FSM	ENSMUSG00000032513.9	ENSMUST00000035099.9	3906	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAACTTGTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	119766631	119754322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_119757103_119757292_119757446_119757878_119758030_119758616_119758828_119759038_119759170_119759285_119759373_119761686_119761891_119762327_119762409_119766523
ENSMUST00000035105.7	chr9	+	1938	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCCATACTCACCAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	119956754	119961435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
ENSMUST00000035106.12	chr9	+	1791	7	FSM	ENSMUSG00000032519.12	ENSMUST00000035106.12	1791	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAGCACTCTGATTGACA	NA	NA	NA	NA	NA	NA	NA	NA	119939439	119953570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_119939639_119945567_119945690_119946518_119946604_119949322_119949503_119949738_119949914_119951159_119951327_119952707
ENSMUST00000035113.11	chr9	+	577	3	FSM	ENSMUSG00000032526.12	ENSMUST00000035113.11	577	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTGTCCCATGTCAACT	NA	NA	NA	NA	NA	NA	NA	NA	121539394	121541987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_121539538_121539704_121539782_121541630
ENSMUST00000035116.12	chr9	-	2320	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTGTTGTTTTTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	100916951	100864084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
ENSMUST00000035154.4	chr9	-	2516	3	FSM	ENSMUSG00000032551.8	ENSMUST00000035154.4	3361	3	47	798	0	-798	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATTTTACTCATTTACA	NA	NA	NA	NA	NA	NA	NA	NA	122780018	122774951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_122777174_122777989_122778135_122779869
ENSMUST00000035177.15	chr9	+	1742	10	FSM	ENSMUSG00000032563.17	ENSMUST00000035177.15	3972	10	31	2199	31	1217	multi-exon	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCATGGGGGGACATATG	NA	NA	NA	NA	NA	NA	NA	NA	104930468	104954888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_104930712_104931619_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360_104952439_104954191
ENSMUST00000035214.11	chr9	+	4559	6	FSM	ENSMUSG00000032594.12	ENSMUST00000035214.11	4559	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTCCAAGTCTGTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	107879699	107925981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923_107922100_107922661
ENSMUST00000035220.12	chr9	+	2050	11	FSM	ENSMUSG00000032601.14	ENSMUST00000035220.12	4965	11	314	2601	0	841	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGGTGCTGATATGAGG	NA	NA	NA	NA	NA	NA	NA	NA	108569655	108625034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_108569912_108591471_108591508_108594061_108594115_108596401_108596486_108605372_108605480_108610308_108610463_108617633_108617736_108617886_108617962_108621428_108621495_108622680_108622823_108624059
ENSMUST00000035227.8	chr9	+	2133	6	FSM	ENSMUSG00000032606.8	ENSMUST00000035227.8	2133	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTGTCAGCTGCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	108167627	108173697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_108167862_108170534_108170712_108171129_108171244_108171644_108171717_108172087_108172193_108172266
ENSMUST00000035230.7	chr9	+	2082	9	FSM	ENSMUSG00000032607.13	ENSMUST00000035230.7	2082	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCTCTAGCTTCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	108174068	108179501	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
ENSMUST00000035240.7	chr11	+	919	3	FSM	ENSMUSG00000057219.12	ENSMUST00000035240.7	2260	3	75	1266	75	115	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCATCCAGGGAAAACAGG	NA	NA	NA	NA	NA	NA	NA	NA	115366567	115380027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_115366854_115366947_115367092_115379538
ENSMUST00000035276.5	chr7	-	676	3	FSM	ENSMUSG00000042462.5	ENSMUST00000035276.5	676	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	471	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCGATTTTTCTTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	126859881	126856130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126856509_126858529_126858641_126859694
ENSMUST00000035283.11	chr11	-	2450	17	FSM	ENSMUSG00000040667.12	ENSMUST00000035283.11	2450	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTGACTTTGCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	70860788	70833907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835407_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ENSMUST00000035295.6	chr1	-	2048	3	FSM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3314	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAGTGTCACTGGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	182110369	182103336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_182104459_182106540_182107284_182110186
ENSMUST00000035301.7	chr4	+	1135	3	FSM	ENSMUSG00000039105.7	ENSMUST00000035301.7	1135	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7660	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGAGCAGAATTTCATCT	NA	NA	NA	NA	NA	NA	NA	NA	63463008	63468987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_63463237_63466821_63466923_63468181
ENSMUST00000035325.15	chr1	-	3348	12	FSM	ENSMUSG00000033684.15	ENSMUST00000035325.15	3348	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGTGTTTGACTTGATCC	NA	NA	NA	NA	NA	NA	NA	NA	155688635	155653903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_155655685_155657020_155657201_155658270_155658419_155659148_155659272_155662539_155662670_155665043_155665179_155666726_155666873_155667939_155668031_155670291_155670395_155671096_155671143_155679442_155679544_155688271
ENSMUST00000035395.14	chr7	+	836	6	FSM	ENSMUSG00000030649.19	ENSMUST00000035395.14	836	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAATGTCTATTCCCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	101545546	101548747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_101545658_101546939_101546995_101547153_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUST00000035426.7	chr16	+	1611	2	FSM	ENSMUSG00000079737.5	ENSMUST00000035426.7	1611	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGTACTTTGGTATCT	NA	NA	NA	NA	NA	NA	NA	NA	13489883	13496249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_13489943_13494697
ENSMUST00000035481.5	chr2	+	471	4	FSM	ENSMUSG00000037938.5	ENSMUST00000035481.5	1325	4	104	750	104	-750	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGGGCCCTGCTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	128971723	128975304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_128971778_128972097_128972239_128972320_128972487_128975194
ENSMUST00000035493.14	chr6	+	910	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	0	1237	0	-1237	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGACAGGCCTGGCACAG	NA	NA	NA	NA	NA	NA	NA	NA	117883755	117901343	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
ENSMUST00000035497.5	chr4	+	3158	10	FSM	ENSMUSG00000042616.9	ENSMUST00000035497.5	5013	10	39	1816	0	1715	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCACAGTAGAAACCCTAAG	NA	NA	NA	NA	NA	NA	NA	NA	125952396	125984172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_125952586_125967597_125967753_125970509_125970678_125971128_125971210_125976674_125976779_125977388_125977518_125978185_125978256_125980335_125980476_125981498_125981563_125982114
ENSMUST00000035560.9	chr1	+	1564	8	FSM	ENSMUSG00000033701.14	ENSMUST00000035560.9	5592	8	4	4024	0	-4024	multi-exon	TRUE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTGCATAATATAATCCAA	NA	NA	NA	NA	NA	NA	NA	NA	155433871	155563052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155477199_155477283_155491612_155491719_155500614_155500705_155552949_155552981_155562694
ENSMUST00000035579.10	chr5	+	2126	12	FSM	ENSMUSG00000032898.10	ENSMUST00000035579.10	3883	12	0	1757	0	-1757	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGACAGTGTGTGACA	NA	NA	NA	NA	NA	NA	NA	NA	118114848	118146508	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_118115105_118115922_118116059_118117805_118117901_118124163_118124286_118126842_118126990_118127188_118127326_118128867_118129005_118132546_118132727_118133434_118133568_118138402_118138594_118140079_118140238_118146074
ENSMUST00000035597.10	chr10	+	2869	15	FSM	ENSMUSG00000035206.11	ENSMUST00000035597.10	2869	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCCTCCTGTCCTGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	80691108	80704542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80691223_80697179_80697300_80698013_80698197_80698532_80698623_80698788_80698929_80699013_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333_80702495_80703233
ENSMUST00000035648.6	chr18	-	4765	4	FSM	ENSMUSG00000032905.6	ENSMUST00000035648.6	4765	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTTGTAGCTCCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	46874646	46863210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_46867577_46868321_46868385_46870461_46870599_46874447
ENSMUST00000035648.6-0	chr18	-	4185	4	FSM	ENSMUSG00000032905.6	ENSMUST00000035648.6	4765	4	22	558	22	-558	multi-exon	FALSE	canonical	NA	NA	NA	NA	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCAGTGGAGTAAGCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	46874624	46863768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_46867577_46868321_46868385_46870461_46870599_46874447
ENSMUST00000035651.6	chr5	+	1253	4	FSM	ENSMUSG00000039883.6	ENSMUST00000035651.6	2154	4	0	901	0	-901	multi-exon	FALSE	canonical	NA	NA	NA	NA	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAAACAACAGCCTGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	21748560	21780001	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_21748718_21765397_21766298_21775217_21775374_21779961
ENSMUST00000035673.8	chr6	+	2063	3	FSM	ENSMUSG00000033933.14	ENSMUST00000035673.8	2792	3	0	729	0	-729	multi-exon	FALSE	canonical	NA	NA	NA	NA	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTTGTATCCTGATTT	NA	NA	NA	NA	NA	NA	NA	NA	113600919	113607865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_113601340_113605052_113605176_113606345
ENSMUST00000035725.7	chr6	+	485	3	FSM	ENSMUSG00000033940.9	ENSMUST00000035725.7	1095	3	0	610	0	-610	multi-exon	FALSE	canonical	NA	NA	NA	NA	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTACTTGTCAATGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	113581732	113593302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_113581858_113592736_113592820_113593025
ENSMUST00000035748.14	chrX	+	2303	6	FSM	ENSMUSG00000033460.15	ENSMUST00000035748.14	2303	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	NA	NA	NA	NA	NA	NA	NA	133618737	133622666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619742_133620375_133620475_133620782
ENSMUST00000035771.5	chr7	-	1309	7	FSM	ENSMUSG00000042502.11	ENSMUST00000035771.5	1309	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCCTTTTGGCTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	126795047	126792829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794640_126794958
ENSMUST00000035775.9	chr10	-	468	4	FSM	ENSMUSG00000035215.10	ENSMUST00000035775.9	468	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCTGCTCTGTAACTTT	NA	NA	NA	NA	NA	NA	NA	NA	80691043	80688658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80691014
ENSMUST00000035785.9	chr3	+	1005	5	FSM	ENSMUSG00000041355.14	ENSMUST00000035785.9	1189	5	-30	214	0	-136	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGGCTTGAGGGTCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	88486947	88495512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUST00000035799.6	chr5	+	2787	2	FSM	ENSMUSG00000039899.6	ENSMUST00000035799.6	3788	2	0	1001	0	-1001	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTGAATACAGTGACAACT	NA	NA	NA	NA	NA	NA	NA	NA	21577639	21582371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_21578307_21580251
ENSMUST00000035899.8	chr13	-	1753	5	FSM	ENSMUSG00000038982.11	ENSMUST00000035899.8	5634	5	48	3833	0	-3833	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAACTCCTGCCAGCGTT	NA	NA	NA	NA	NA	NA	NA	NA	38819037	38786649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_38788005_38796618_38796678_38803065_38803196_38814968_38815052_38818911
ENSMUST00000035983.12	chr5	+	1069	6	FSM	ENSMUSG00000041453.13	ENSMUST00000035983.12	1856	6	0	787	0	259	multi-exon	FALSE	canonical	NA	NA	NA	NA	1329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTCAGGCTGCATGATG	NA	NA	NA	NA	NA	NA	NA	NA	146769699	146773055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_146769982_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUST00000036111.10	chr6	+	4162	8	FSM	ENSMUSG00000040112.10	ENSMUST00000036111.10	4162	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATACTCTACTTCCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	146944261	146975489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_146944399_146947608_146947647_146949631_146949800_146951325_146951387_146957349_146957490_146961639_146961750_146962920_146962991_146972051
ENSMUST00000036125.10	chr5	-	796	6	FSM	ENSMUSG00000040731.14	ENSMUST00000036125.10	2367	6	45	1526	45	-1526	multi-exon	FALSE	canonical	NA	NA	NA	NA	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGCGGAAACACAGAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	134668156	134650256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_134650503_134650802_134650941_134654219_134654317_134654394_134654460_134656441_134656630_134668094
ENSMUST00000036127.9	chr8	+	1739	13	FSM	ENSMUSG00000033249.11	ENSMUST00000036127.9	1739	13	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGTCTCTCTTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	105996432	106002477	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_105996629_105997178_105997288_105997400_105997529_105997619_105997745_105998005_105998082_105998216_105998282_105998737_105998841_105999091_105999217_105999337_105999566_106001277_106001384_106001479_106001546_106001674_106001745_106002135
ENSMUST00000036153.12	chr1	+	1790	8	FSM	ENSMUSG00000034432.12	ENSMUST00000036153.12	2287	8	497	0	7	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTAGTGGGTTACCTAA	NA	NA	NA	NA	NA	NA	NA	NA	90531199	90541063	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
ENSMUST00000036153.12-1	chr1	+	1765	8	FSM	ENSMUSG00000034432.12	ENSMUST00000036153.12	2287	8	0	522	0	516	multi-exon	FALSE	canonical	NA	NA	NA	NA	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTCAACTTAGGTGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	90530702	90540541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
ENSMUST00000036158.7	chr18	+	1082	3	FSM	ENSMUSG00000033272.13	ENSMUST00000185899.2	312	3	-394	-376	0	376	multi-exon	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGTCTGGTGTGGGCCATG	NA	NA	NA	NA	NA	NA	NA	NA	36812267	36815154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_36812677_36813568_36813668_36814580
ENSMUST00000036221.12	chr8	+	772	3	FSM	ENSMUSG00000033313.12	ENSMUST00000036221.12	1901	3	34	1095	34	-1095	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGCACGCAGTCTGCG	NA	NA	NA	NA	NA	NA	NA	NA	105991313	105994863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_105991393_105993326_105993798_105994641
ENSMUST00000036247.10	chr15	-	1426	3	FSM	ENSMUSG00000116138.2	ENSMUST00000036247.10	1754	3	16	312	16	-312	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTGCTGGGCTCATCTA	NA	NA	NA	NA	NA	NA	NA	NA	76608024	76605976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_76607184_76607370_76607420_76607854
ENSMUST00000036252.7	chr3	-	1536	10	FSM	ENSMUSG00000028063.16	ENSMUST00000036252.7	1536	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGCCCTGGCCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	88400619	88390512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88400543
ENSMUST00000036274.8	chr7	-	2909	5	FSM	ENSMUSG00000035227.8	ENSMUST00000036274.8	2909	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCTTTTCCTTTCAGTA	NA	NA	NA	NA	NA	NA	NA	NA	99508184	99486775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99507970
ENSMUST00000036303.9	chrX	+	3103	6	FSM	ENSMUSG00000041380.14	ENSMUST00000036303.9	4747	6	117	1527	116	33	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAATAGAAATACAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	145745625	145978743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_145746071_145764543_145764602_145855380_145855484_145858726_145859044_145952565_145952767_145976764
ENSMUST00000036355.13	chr16	-	5483	18	FSM	ENSMUSG00000033149.18	ENSMUST00000036355.13	5483	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGTGGAAACACTTTC	NA	NA	NA	NA	NA	NA	NA	NA	45664741	45566605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_45568295_45569089_45569176_45571708_45571929_45577461_45577609_45578479_45578571_45583272_45583478_45591034_45591135_45592497_45592639_45595306_45595451_45598075_45598166_45600618_45600730_45601664_45601821_45609351_45609481_45621854_45621993_45623058_45623203_45628488_45628873_45645121_45646459_45664570
ENSMUST00000036360.13	chr3	-	752	6	FSM	ENSMUSG00000038543.14	ENSMUST00000036360.13	752	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTTTGCCTACTTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	95799267	95791269	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_95791550_95792281_95792381_95795452_95795609_95796168_95796228_95797034_95797122_95799196
ENSMUST00000036372.8	chr7	+	1301	3	FSM	ENSMUSG00000032640.11	ENSMUST00000036372.8	4176	3	76	2799	76	-2799	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCGCACGATCCAGCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	65759338	65820747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_65759976_65774989_65775486_65820579
ENSMUST00000036376.13	chr11	+	1371	4	FSM	ENSMUSG00000034757.16	ENSMUST00000036376.13	1939	4	20	548	20	-491	multi-exon	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAGTGAGAAGCCTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	102175776	102179515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_102175915_102176489_102176545_102178133_102178698_102178901
ENSMUST00000036380.14	chr4	-	1000	8	FSM	ENSMUSG00000033379.14	ENSMUST00000036380.14	1000	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGCTTCTGTTGGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	117744526	117741522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
ENSMUST00000036387.8	chr10	+	1484	3	FSM	ENSMUSG00000033208.8	ENSMUST00000036387.8	1484	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCTTACCCATCTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	76089686	76096993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_76089793_76092860_76093007_76095761
ENSMUST00000036423.15	chr15	+	1149	4	FSM	ENSMUSG00000033728.15	ENSMUST00000036423.15	2093	4	92	852	0	-852	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGGATTTGAGTGGCAAC	NA	NA	NA	NA	NA	NA	NA	NA	76594930	76598383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76595037_76597066_76597421_76597600_76598186_76598279
ENSMUST00000036437.13	chr5	+	3431	9	FSM	ENSMUSG00000029486.14	ENSMUST00000036437.13	3431	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATCTTTATTCTATT	NA	NA	NA	NA	NA	NA	NA	NA	96357973	96414568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_96358053_96361645_96361770_96371629_96371892_96374143_96374228_96375538_96375611_96379539_96379652_96386697_96386805_96409920_96410003_96412059
ENSMUST00000036497.16	chr12	-	3378	11	FSM	ENSMUSG00000002997.16	ENSMUST00000036497.16	3378	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTCCAAGCATGGTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	32111295	32008474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_32010522_32012997_32013137_32013896_32013963_32015113_32015189_32017211_32017314_32022048_32022203_32025917_32026025_32037878_32037963_32043729_32043783_32088620_32088657_32110780
ENSMUST00000036649.8	chr11	+	1875	7	FSM	ENSMUSG00000033983.15	ENSMUST00000036649.8	2607	7	0	732	0	-732	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAAAAAAAGATCTACCTC	NA	NA	NA	NA	NA	NA	NA	NA	88864760	88881707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
ENSMUST00000036682.9	chr14	-	2812	18	FSM	ENSMUSG00000033885.16	ENSMUST00000036682.9	2812	18	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTAGCTTTGCTAGGTA	NA	NA	NA	NA	NA	NA	NA	NA	14371562	14304655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_14305839_14314427_14314488_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380_14347429_14349901_14349953_14371356
ENSMUST00000036712.6	chr6	+	1479	1	FSM	ENSMUSG00000037827.6	ENSMUST00000036712.6	1479	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGGGTCTGGCATCCTG	NA	NA	NA	NA	NA	NA	NA	NA	128621875	128623354	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_128621900_128623400
ENSMUST00000036720.9	chr17	+	1270	2	FSM	ENSMUSG00000033739.9	ENSMUST00000036720.9	1270	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTGTGGTCTGTGTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	34863737	34865298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_34863928_34864218
ENSMUST00000036742.14	chr11	+	1401	4	FSM	ENSMUSG00000039208.16	ENSMUST00000036742.14	1401	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGTTTTTACAAAGTTAT	NA	NA	NA	NA	NA	NA	NA	NA	121593236	121607132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_121593622_121598555_121598942_121605522_121605583_121606562
ENSMUST00000036805.7	chr10	-	1260	6	FSM	ENSMUSG00000035278.10	ENSMUST00000036805.7	1260	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	80634460	80631932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUST00000036807.13	chr8	+	2295	3	FSM	ENSMUSG00000037214.13	ENSMUST00000036807.13	2295	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGGCCCTGCTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	26648168	26654179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_26648550_26650802_26650999_26652461
ENSMUST00000036854.4	chr4	-	2381	4	FSM	ENSMUSG00000040659.4	ENSMUST00000036854.4	2381	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTGCCGAAGGAGCACTG	NA	NA	NA	NA	NA	NA	NA	NA	141602231	141585452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_141587190_141587858_141587994_141589115_141589264_141601870
ENSMUST00000036862.5	chr12	+	2997	23	FSM	ENSMUSG00000035933.6	ENSMUST00000036862.5	2997	23	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTGTTTCTTCCTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	31704867	31987629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_31704983_31710715_31710856_31715463_31715522_31719768_31719824_31720314_31720385_31735651_31735773_31810845_31810977_31840845_31841012_31851981_31852095_31852404_31852483_31870123_31870206_31883180_31883386_31887193_31887356_31889753_31889854_31919417_31919529_31920070_31920134_31936203_31936308_31943969_31944208_31950895_31950973_31969649_31969777_31970552_31970633_31975643_31975791_31987175
ENSMUST00000036880.8	chr8	+	1642	13	FSM	ENSMUSG00000033862.8	ENSMUST00000036880.8	1642	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	NA	NA	NA	NA	NA	NA	NA	NA	123951580	123958989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_123951708_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
ENSMUST00000036884.3	chr19	+	4486	2	FSM	ENSMUSG00000033863.3	ENSMUST00000036884.3	4486	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCCATTACGTTCTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	23118589	23145498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_23119624_23142046
ENSMUST00000036904.7	chr15	+	1113	2	FSM	ENSMUSG00000037075.8	ENSMUST00000036904.7	4348	2	69	3166	69	-3166	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCATGGGATGACAGACC	NA	NA	NA	NA	NA	NA	NA	NA	58761146	58771073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_58761344_58770157
ENSMUST00000036952.5	chr11	+	2040	3	FSM	ENSMUSG00000036275.14	ENSMUST00000036952.5	2467	3	0	427	0	-427	multi-exon	FALSE	canonical	NA	NA	NA	NA	649	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATTGGGGAAAGTTCACA	NA	NA	NA	NA	NA	NA	NA	NA	52287254	52299123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_52287431_52293872_52294385_52297771
ENSMUST00000036977.9	chr7	+	1595	11	FSM	ENSMUSG00000039018.16	ENSMUST00000036977.9	1595	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCGTTTTCATTGTGCAC	NA	NA	NA	NA	NA	NA	NA	NA	139717476	139730699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_139717687_139718231_139718297_139720108_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139727165_139727248_139729660_139729774_139730067
ENSMUST00000036977.9-0	chr7	+	1329	11	FSM	ENSMUSG00000039018.16	ENSMUST00000036977.9	1595	11	121	145	121	-145	multi-exon	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTATTTTTTTGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	139717597	139730554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_139717687_139718231_139718297_139720108_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139727165_139727248_139729660_139729774_139730067
ENSMUST00000036991.5	chr5	-	1816	3	FSM	ENSMUSG00000041548.5	ENSMUST00000036991.5	1816	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2627	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGCTTCATTTAGCGA	NA	NA	NA	NA	NA	NA	NA	NA	116560923	116546549	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_116547550_116553465_116553530_116560171
ENSMUST00000036996.6	chr8	+	623	3	FSM	ENSMUSG00000033938.6	ENSMUST00000036996.6	623	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATCTGTGCTACTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	84293299	84298255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_84293560_84297458_84297628_84298061
ENSMUST00000037001.10	chr15	+	1137	9	FSM	ENSMUSG00000037353.10	ENSMUST00000037001.10	2502	9	84	1281	0	-192	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTAGTGTAGTGGTGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	100366987	100375764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_100367127_100367565_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
ENSMUST00000037023.9	chr12	-	390	3	FSM	ENSMUSG00000034892.9	ENSMUST00000037023.9	390	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1568	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGTGTGTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	69205960	69204495	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_69204596_69205434_69205535_69205770
ENSMUST00000037096.9	chr2	+	2277	13	FSM	ENSMUSG00000038085.14	ENSMUST00000037096.9	2277	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGCTTCTCTGTTCTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	156154218	156217555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_156154720_156161929_156161984_156170237_156170376_156175498_156175553_156177169_156177334_156180494_156180652_156181050_156181203_156183521_156183661_156195114_156195230_156207038_156207217_156209476_156209598_156215565_156215730_156217215
ENSMUST00000037115.9	chr15	+	1007	4	FSM	ENSMUSG00000038622.9	ENSMUST00000037115.9	1007	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCAGTTTTACTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	52575837	52593960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_52576083_52582741_52582901_52584419_52584525_52593462
ENSMUST00000037119.4	chr2	+	2063	3	FSM	ENSMUSG00000041911.4	ENSMUST00000037119.4	4111	3	1740	308	1740	-308	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTTGTTATTATTATTAA	NA	NA	NA	NA	NA	NA	NA	NA	71360196	71364016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_71360651_71361300_71361501_71362607
ENSMUST00000037127.15	chr4	+	1719	9	FSM	ENSMUSG00000033423.17	ENSMUST00000037127.15	1719	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	1142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCTTGTGTCTAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	117407561	117531494	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_117407928_117410164_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ENSMUST00000037205.11	chr7	+	828	3	FSM	ENSMUSG00000033429.11	ENSMUST00000037205.11	828	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTGTTATTTGAATTT	NA	NA	NA	NA	NA	NA	NA	NA	64042392	64061873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_64042592_64049916_64050255_64061582
ENSMUST00000037246.7	chr19	-	1067	8	FSM	ENSMUSG00000034108.7	ENSMUST00000037246.7	1067	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	4889360	4875393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884200_4884339_4888858_4888932_4889224
ENSMUST00000037260.8	chr15	+	1100	2	FSM	ENSMUSG00000050846.10	ENSMUST00000037260.8	2486	2	0	1386	0	-1386	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCATCGAGCACCAGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	75812800	75819863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_75813009_75818971
ENSMUST00000037280.5	chr2	+	2706	5	FSM	ENSMUSG00000034216.13	ENSMUST00000037280.5	4054	5	0	1348	0	-34	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAATCTGTAGTTCCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	119119222	119127586	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_119119612_119120633_119120776_119123178_119123271_119123399_119125271_119127374
ENSMUST00000037285.10	chr11	+	3512	20	FSM	ENSMUSG00000011877.14	ENSMUST00000037285.10	3512	20	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAGGTGGGGCTTAGC	NA	NA	NA	NA	NA	NA	NA	NA	77384387	77398612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_77384461_77389790_77389925_77390342_77390456_77390564_77390671_77391173_77391392_77391472_77391568_77391897_77391941_77393654_77393682_77393843_77393893_77394181_77394255_77394746_77394845_77395197_77395310_77395424_77395559_77395693_77396078_77396148_77396203_77396329_77396417_77396505_77396580_77396705_77396889_77397004_77397069_77397221
ENSMUST00000037324.12	chr11	+	688	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	724	28	-201	multi-exon	FALSE	canonical	NA	NA	NA	NA	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTGTAGTTCCAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	52122863	52136961	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
ENSMUST00000037333.17	chr17	+	1999	7	FSM	ENSMUSG00000034165.17	ENSMUST00000037333.17	1999	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTTGTGATCCCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	47816052	47910616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_47816192_47889633_47889699_47904578_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ENSMUST00000037349.8	chrX	-	2237	16	FSM	ENSMUSG00000036932.15	ENSMUST00000037349.8	2237	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	47602440	47563820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
ENSMUST00000037376.14	chr6	+	1405	10	FSM	ENSMUSG00000034744.14	ENSMUST00000037376.14	1405	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	NA	NA	NA	NA	NA	NA	NA	NA	83771963	83779538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_83772265_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
ENSMUST00000037383.13	chr12	+	903	7	FSM	ENSMUSG00000037669.16	ENSMUST00000037383.13	2737	7	40	1794	0	-1794	multi-exon	TRUE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTTCCAGAAGGCAATAT	NA	NA	NA	NA	NA	NA	NA	NA	8258146	8333965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_8258193_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
ENSMUST00000037399.16	chr7	+	1028	5	FSM	ENSMUSG00000040466.17	ENSMUST00000037399.16	1028	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATTGATTGATTGATTG	NA	NA	NA	NA	NA	NA	NA	NA	27147402	27165569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_27147622_27158680_27158846_27158987_27159078_27161991_27162121_27165144
ENSMUST00000037489.15	chr17	+	1255	7	FSM	ENSMUSG00000034254.18	ENSMUST00000037489.15	2190	7	112	823	112	-792	multi-exon	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCCATCTTGTCTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	34824946	34831600	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_34825146_34829418_34829619_34829845_34829980_34830247_34830424_34830578_34830675_34830764_34830841_34831226
ENSMUST00000037540.5	chr7	-	944	3	FSM	ENSMUSG00000032860.6	ENSMUST00000037540.5	3011	3	7	2060	7	-1401	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTGCTGGTGCTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	100661198	100647834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_100648308_100652770_100652962_100660918
ENSMUST00000037615.7	chr13	-	4061	10	FSM	ENSMUSG00000035936.7	ENSMUST00000037615.7	5647	10	234	1352	234	-1352	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATTTTTGTGATTAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	25121410	25092913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_25095750_25096230_25096290_25097726_25097897_25099744_25099904_25102483_25102628_25103661_25103806_25107949_25108067_25109960_25110132_25111523_25111608_25121233
ENSMUST00000037796.14	chr1	+	1539	13	FSM	ENSMUSG00000033021.17	ENSMUST00000037796.14	1539	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGCTTGGACTCCTACT	NA	NA	NA	NA	NA	NA	NA	NA	75412573	75419818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_75412656_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUST00000037807.3	chr6	+	1242	3	FSM	ENSMUSG00000034777.3	ENSMUST00000037807.3	1242	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTCTGTCCCTGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	83688245	83715295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_83688526_83710080_83710269_83714521
ENSMUST00000037843.7	chr16	-	1851	3	FSM	ENSMUSG00000039568.7	ENSMUST00000037843.7	1851	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	756	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTAGTCTTGCCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	4698179	4692641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_4693734_4694225_4694286_4697480
ENSMUST00000037907.13	chr4	-	3874	18	FSM	ENSMUSG00000040296.16	ENSMUST00000037907.13	3874	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTCCAATTCATTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	40239828	40204848	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_40206107_40208450_40208595_40208770_40208923_40209878_40210050_40211549_40211641_40213730_40213880_40216354_40216491_40217329_40217488_40220398_40220504_40222034_40222198_40223797_40224057_40225039_40225194_40225597_40225706_40226596_40226720_40227965_40228114_40229494_40229677_40235247_40235383_40239590
ENSMUST00000037918.12	chr5	+	1256	8	FSM	ENSMUSG00000037720.17	ENSMUST00000037918.12	6247	8	131	4860	-1	-4860	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGTATGTTTGGAGACAG	NA	NA	NA	NA	NA	NA	NA	NA	67418038	67443944	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438
ENSMUST00000037923.5	chr13	+	3086	4	FSM	ENSMUSG00000038132.7	ENSMUST00000037923.5	3086	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTTGCATCAGTTATT	NA	NA	NA	NA	NA	NA	NA	NA	46571909	46584571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_46572675_46573750_46573875_46575326_46575382_46582429
ENSMUST00000037967.6	chrX	-	2023	3	FSM	ENSMUSG00000032806.14	ENSMUST00000037967.6	2023	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCTCGGGTCCCTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	73416955	73412822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_73414618_73416219_73416289_73416796
ENSMUST00000038027.6	chr7	-	2884	18	FSM	ENSMUSG00000036427.6	ENSMUST00000038027.6	2884	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTAGGGTTTTATTGCT	NA	NA	NA	NA	NA	NA	NA	NA	33929761	33900754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
ENSMUST00000038032.5	chr13	+	398	2	FSM	ENSMUSG00000038152.5	ENSMUST00000038032.5	729	2	0	331	0	-331	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCGCTCAGTGCCGCGTT	NA	NA	NA	NA	NA	NA	NA	NA	46118728	46119653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_46118860_46119386
ENSMUST00000038039.3	chr13	+	792	7	FSM	ENSMUSG00000035958.4	ENSMUST00000038039.3	1957	7	143	1022	130	-1022	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTTTTAGGCAAACCTAA	NA	NA	NA	NA	NA	NA	NA	NA	25015804	25025114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_25015913_25015992_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
ENSMUST00000038075.12	chr14	-	729	3	FSM	ENSMUSG00000041625.16	ENSMUST00000038075.12	1076	3	14	333	0	-322	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACTTGCAGGTACTAGAT	NA	NA	NA	NA	NA	NA	NA	NA	123150560	123128604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_123129229_123137887_123137945_123150512
ENSMUST00000038091.8	chr1	+	1787	7	FSM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	0	1426	0	-1426	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGTAGACACAGATATTC	NA	NA	NA	NA	NA	NA	NA	NA	180678691	180694252	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662_180688784_180689922_180690407_180693636
ENSMUST00000038096.8	chr11	+	2520	6	FSM	ENSMUSG00000039253.8	ENSMUST00000038096.8	2520	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTAAGACTGGTATATTT	NA	NA	NA	NA	NA	NA	NA	NA	121312226	121322114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_121312430_121315751_121315904_121316380_121316473_121317446_121317530_121319870_121319994_121320247
ENSMUST00000038107.9	chr10	+	1614	2	FSM	ENSMUSG00000039910.11	ENSMUST00000038107.9	1979	2	24	341	9	-310	multi-exon	FALSE	canonical	NA	NA	NA	NA	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGCCAAACCGTTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	17598989	17601081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_17599208_17599685
ENSMUST00000038108.12	chr3	-	1249	4	FSM	ENSMUSG00000037152.12	ENSMUST00000038108.12	1249	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2331	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACAGGGTGGAACCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	51316409	51312097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_51313041_51314756_51314834_51315565_51315670_51316284
ENSMUST00000038121.5	chr12	+	1005	2	FSM	ENSMUSG00000035983.5	ENSMUST00000038121.5	1366	2	0	361	0	-361	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGGCAAAGAGCTATACAT	NA	NA	NA	NA	NA	NA	NA	NA	40272756	40274876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_40273553_40274667
ENSMUST00000038149.13	chr17	+	1641	9	FSM	ENSMUSG00000034673.15	ENSMUST00000038149.13	3068	9	0	1427	0	-443	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGCATCTAGAGGACAAAC	NA	NA	NA	NA	NA	NA	NA	NA	34811236	34814947	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_34811749_34812545_34812620_34812840_34813089_34813211_34813403_34813555_34813692_34813774_34813929_34814238_34814328_34814601_34814689_34814797
ENSMUST00000038169.8	chr10	-	544	3	FSM	ENSMUSG00000033307.8	ENSMUST00000038169.8	544	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6568	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	75696074	75695186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_75695378_75695520_75695694_75695894
ENSMUST00000038225.8	chr2	+	3101	12	FSM	ENSMUSG00000038963.16	ENSMUST00000038225.8	3101	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTATGTCTAAGCGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	180102771	180116660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_180102992_180105733_180106622_180107389_180107481_180108850_180108973_180109359_180109472_180112896_180113052_180113846_180114043_180114197_180114364_180114453_180114627_180114895_180114961_180115306_180115456_180115896
ENSMUST00000038244.15	chr17	+	943	4	FSM	ENSMUSG00000034786.18	ENSMUST00000038244.15	1343	4	286	114	286	-114	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCCAAGGCAGAGGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	34809065	34810614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_34809235_34809434_34809538_34809715_34809916_34810143
ENSMUST00000038287.7	chr19	+	1193	4	FSM	ENSMUSG00000034765.7	ENSMUST00000038287.7	2473	4	0	1280	0	-1280	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGGGGAGGCAGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	53517539	53529582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_53518128_53522256_53522406_53525887_53526108_53529346
ENSMUST00000038332.9	chr7	+	1008	3	FSM	ENSMUSG00000038888.9	ENSMUST00000038332.9	2475	3	0	1467	0	-52	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGGCCTCAACCGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	43321439	43326255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_43321500_43324527_43325071_43325850
ENSMUST00000038368.9	chr2	+	934	2	FSM	ENSMUSG00000042745.10	ENSMUST00000038368.9	934	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGCTGTGACTTCTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	152578170	152579330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_152578666_152578891
ENSMUST00000038377.9	chr10	+	763	2	FSM	ENSMUSG00000036478.9	ENSMUST00000038377.9	5001	2	0	4238	0	-97	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAGGAGGAACTTCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	96452867	96454433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_96453335_96454137
ENSMUST00000038383.14	chr6	+	1371	10	FSM	ENSMUSG00000061758.14	ENSMUST00000038383.14	1371	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTTCAACTGTCAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	34361152	34373885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_34361343_34364606_34364775_34365710_34365828_34366989_34367068_34368951_34369075_34369323_34369431_34369849_34369932_34370992_34371077_34371661_34371745_34373546
ENSMUST00000038406.7	chr6	+	1358	10	FSM	ENSMUSG00000029762.7	ENSMUST00000038406.7	1358	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1042	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGAAGTGATTTTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	34331053	34345398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_34331232_34333190_34333359_34334395_34334513_34335065_34335144_34340266_34340390_34340656_34340764_34341171_34341254_34342141_34342226_34342837_34342921_34345060
ENSMUST00000038407.6	chr9	+	2440	3	FSM	ENSMUSG00000034839.6	ENSMUST00000038407.6	2440	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGGGATTCTAGGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	60620271	60646084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_60620689_60631429_60631641_60644272
ENSMUST00000038411.5	chr10	+	1189	2	FSM	ENSMUSG00000113640.2	ENSMUST00000038411.5	1411	2	0	222	0	-222	multi-exon	TRUE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGGCTCCATGGCCTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	80438713	80443266	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80438784_80442147
ENSMUST00000038421.8	chr8	+	808	4	FSM	ENSMUSG00000037296.8	ENSMUST00000038421.8	2663	4	299	1556	15	295	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCACTGTGGAGCCAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	26275614	26292447	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_26275746_26282184_26282254_26283704_26283821_26291955
ENSMUST00000038434.4	chr4	-	856	2	FSM	ENSMUSG00000036114.4	ENSMUST00000038434.4	856	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	373	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCTGTTGTGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	41713534	41712032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_41712815_41713460
ENSMUST00000038521.14	chr7	+	1365	5	FSM	ENSMUSG00000035585.17	ENSMUST00000038521.14	1365	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	3696763	3704011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698362_3698621_3703526
ENSMUST00000038539.8	chr14	+	1417	2	FSM	ENSMUSG00000040822.8	ENSMUST00000038539.8	1843	2	21	405	21	-191	multi-exon	FALSE	canonical	NA	NA	NA	NA	407	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGTCCGCCTTTTATTCC	NA	NA	NA	NA	NA	NA	NA	NA	54923693	54927793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_54924578_54927260
ENSMUST00000038564.13	chr4	-	1174	5	FSM	ENSMUSG00000028207.19	ENSMUST00000038564.13	1174	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGTTTGTGTTATACAA	NA	NA	NA	NA	NA	NA	NA	NA	9669162	9621695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_9622227_9624359_9624402_9635900_9635970_9639197_9639348_9668780
ENSMUST00000038570.9	chr11	+	1027	10	FSM	ENSMUSG00000034285.16	ENSMUST00000038570.9	1926	10	48	851	48	-851	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCTAACCTCTCTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	4823998	4843349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
ENSMUST00000038600.4	chr2	+	2080	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCTCTAGAACTTTGAAC	NA	NA	NA	NA	NA	NA	NA	NA	28358077	28361190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
ENSMUST00000038614.12	chr7	+	973	5	FSM	ENSMUSG00000042675.16	ENSMUST00000038614.12	973	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCTGGCTCACATGGAAT	NA	NA	NA	NA	NA	NA	NA	NA	126376126	126379686	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126376276_126376942_126377126_126377225_126377270_126377477_126377587_126379198
ENSMUST00000038658.15	chr6	+	1379	4	FSM	ENSMUSG00000043131.15	ENSMUST00000038658.15	4119	4	0	2740	0	-2740	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTCAGATTAATTTCATA	NA	NA	NA	NA	NA	NA	NA	NA	83303061	83318017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_83303250_83306848_83307016_83315262_83315427_83317157
ENSMUST00000038690.6	chr13	+	1745	2	FSM	ENSMUSG00000039182.7	ENSMUST00000038690.6	2914	2	29	1140	29	-247	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCATCTATTTAAGGTC	NA	NA	NA	NA	NA	NA	NA	NA	14804861	14812541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_14804950_14810884
ENSMUST00000038738.7	chr8	-	1782	3	FSM	ENSMUSG00000038069.7	ENSMUST00000038738.7	3464	3	1	1681	0	-1580	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACCTCCAGCACTGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	48166966	48164059	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_48165330_48165953_48166054_48166554
ENSMUST00000038757.8	chr15	+	2490	4	FSM	ENSMUSG00000042109.9	ENSMUST00000038757.8	2490	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTCTTGAGTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	81820959	81835142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_81821189_81830831_81831134_81832774_81832898_81833306
ENSMUST00000038770.4	chr16	+	1257	2	FSM	ENSMUSG00000039646.6	ENSMUST00000038770.4	2829	2	48	1524	48	-1524	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTACTATCAGGGAACCCA	NA	NA	NA	NA	NA	NA	NA	NA	4457852	4467142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_4458013_4466045
ENSMUST00000038830.10	chr19	-	1614	4	FSM	ENSMUSG00000035171.10	ENSMUST00000038830.10	1614	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	21630340	21574675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_21575699_21576118_21576233_21596472_21596580_21629970
ENSMUST00000038868.14	chr4	+	2466	13	FSM	ENSMUSG00000034401.17	ENSMUST00000038868.14	2466	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	265	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGGTATTTTCATAGGT	NA	NA	NA	NA	NA	NA	NA	NA	111577180	111686339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663228_111679937_111680030_111685382
ENSMUST00000038945.6	chr1	+	1017	2	FSM	ENSMUSG00000041801.6	ENSMUST00000038945.6	1435	2	0	418	0	-418	multi-exon	FALSE	canonical	NA	NA	NA	NA	1590	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCCCTTGGTTCTGGGTT	NA	NA	NA	NA	NA	NA	NA	NA	135693856	135696456	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_135694633_135696215
ENSMUST00000038973.7	chr17	-	1234	11	FSM	ENSMUSG00000035521.14	ENSMUST00000038973.7	1234	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATGGTTATGTATTATA	NA	NA	NA	NA	NA	NA	NA	NA	25459090	25453290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
ENSMUST00000039016.14	chr19	+	2129	5	FSM	ENSMUSG00000035342.15	ENSMUST00000039016.14	3062	5	0	933	0	-933	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACCCCCTGCCACCACCG	NA	NA	NA	NA	NA	NA	NA	NA	45003303	45014536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_45003763_45009825_45010276_45011980_45012644_45013157_45013419_45014240
ENSMUST00000039048.2	chr19	+	987	4	FSM	ENSMUSG00000035372.3	ENSMUST00000039048.2	1882	4	38	857	0	-849	multi-exon	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAGGTACCACCGTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	3758370	3767024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_3758437_3764403_3764626_3765637_3765803_3766490
ENSMUST00000039059.8	chr9	+	2365	17	FSM	ENSMUSG00000035382.10	ENSMUST00000039059.8	3876	17	488	1023	0	-970	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAGCAAGGACCTGGATG	NA	NA	NA	NA	NA	NA	NA	NA	45818282	45839987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_45818338_45819825_45819950_45820557_45821035_45821672_45821808_45822381_45822548_45824248_45824340_45825627_45825683_45826385_45826525_45827285_45827387_45830059_45830228_45830543_45830652_45831089_45831193_45837208_45837366_45838031_45838127_45838872_45838967_45839184_45839303_45839808
ENSMUST00000039101.12	chr16	-	1442	5	FSM	ENSMUSG00000041079.13	ENSMUST00000039101.12	2009	5	12	555	12	-555	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTGTGAGGTACCCGGTG	NA	NA	NA	NA	NA	NA	NA	NA	87237449	87230849	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_87231515_87233460_87233824_87233951_87234020_87234181_87234403_87237324
ENSMUST00000039132.9	chr17	+	1460	4	FSM	ENSMUSG00000053600.9	ENSMUST00000039132.9	2376	4	31	885	31	-885	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCATGAACGAACTCACACA	NA	NA	NA	NA	NA	NA	NA	NA	33184818	33197322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_33184904_33194887_33195015_33195200_33195259_33196132
ENSMUST00000039152.14	chr11	+	4325	23	FSM	ENSMUSG00000034931.16	ENSMUST00000039152.14	4325	23	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTTTATTATGACTTT	NA	NA	NA	NA	NA	NA	NA	NA	101623775	101658184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_101624015_101624981_101625068_101626203_101626277_101626634_101626721_101628482_101628593_101628955_101629388_101630529_101630675_101631488_101631693_101632326_101632415_101633901_101634000_101635931_101636080_101640710_101640893_101641703_101641899_101642836_101643023_101643110_101643322_101643973_101644156_101645557_101645699_101648418_101648575_101653034_101653173_101654722_101654852_101654970_101655168_101655603_101655784_101657465
ENSMUST00000039161.10	chr9	+	918	8	FSM	ENSMUSG00000035443.11	ENSMUST00000039161.10	918	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAAGTGTTTTCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	26911017	26918630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
ENSMUST00000039164.4	chr3	+	1379	3	FSM	ENSMUSG00000036832.6	ENSMUST00000039164.4	2464	3	0	1085	0	-1085	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGCTTTTAAGTTTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	145926717	145990856	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_145926903_145946302_145947060_145990419
ENSMUST00000039205.11	chr17	+	2314	7	FSM	ENSMUSG00000035473.11	ENSMUST00000039205.11	2314	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGACTCTTGTTCTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	80434899	80492530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_80435335_80445441_80445597_80452408_80452616_80457517_80457600_80488989_80489132_80490620_80490796_80491412
ENSMUST00000039286.5	chr10	+	1746	8	FSM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	57	549	57	-549	multi-exon	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAAGGCGACTTGTCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	44144410	44239738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
ENSMUST00000039388.3	chr11	+	1382	2	FSM	ENSMUSG00000034936.3	ENSMUST00000039388.3	1382	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTTGATCTGGTAACT	NA	NA	NA	NA	NA	NA	NA	NA	101556366	101558658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_101556464_101557373
ENSMUST00000039442.12	chr3	+	876	4	FSM	ENSMUSG00000039887.12	ENSMUST00000039442.12	2037	4	117	1044	63	343	multi-exon	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTGTTTTTAATGGTT	NA	NA	NA	NA	NA	NA	NA	NA	121085538	121155699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_121085633_121092252_121092408_121113728_121113861_121155204
ENSMUST00000039487.10	chr17	+	809	3	FSM	ENSMUSG00000034345.15	ENSMUST00000039487.10	2245	3	51	1385	51	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCTTTTACCCTGGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	6130111	6135407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_6130187_6131076_6131150_6134746
ENSMUST00000039551.9	chr2	+	728	3	FSM	ENSMUSG00000038628.9	ENSMUST00000039551.9	2948	3	23	2197	23	-2197	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGTCCTTGTTATGTAG	NA	NA	NA	NA	NA	NA	NA	NA	181506152	181510426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_181506363_181507738_181507827_181509996
ENSMUST00000039577.8	chr17	+	2164	5	FSM	ENSMUSG00000023892.9	ENSMUST00000039577.8	2574	5	0	410	0	-410	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTGGTGAGAAACCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	21670635	21685439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_21670684_21672698_21672790_21676558_21676651_21681922_21682050_21683633
ENSMUST00000039601.10	chr11	+	821	5	FSM	ENSMUSG00000040767.11	ENSMUST00000039601.10	821	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	338	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCAGAAAGCCATAGT	NA	NA	NA	NA	NA	NA	NA	NA	32155414	32158984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_32155664_32156959_32157051_32157556_32157663_32158333_32158409_32158684
ENSMUST00000039608.9	chr18	+	2456	17	FSM	ENSMUSG00000035765.11	ENSMUST00000039608.9	2456	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGACTTATTTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	75151855	75420035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060_75363244_75376355_75376470_75419690
ENSMUST00000039620.7	chr16	+	487	3	FSM	ENSMUSG00000022947.9	ENSMUST00000039620.7	1170	3	44	639	44	-432	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGGGGTTAAAAGCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	93480146	93487239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_93480502_93481934_93482043_93487215
ENSMUST00000039659.9	chr16	+	512	3	FSM	ENSMUSG00000051483.10	ENSMUST00000039659.9	1237	3	52	673	0	-85	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCTGAAAAACTGCAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	93404776	93406720	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_93405143_93405676_93405785_93406682
ENSMUST00000039665.8	chr15	+	2255	14	FSM	ENSMUSG00000032783.10	ENSMUST00000039665.8	2255	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAATGGGGCAGCCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	98972858	98981284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_98972974_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
ENSMUST00000039694.13	chr13	-	1327	9	FSM	ENSMUSG00000003062.14	ENSMUST00000039694.13	1327	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTGTCTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	19579965	19541845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
ENSMUST00000039725.12	chr1	+	4105	15	FSM	ENSMUSG00000039748.12	ENSMUST00000039725.12	7796	15	215	3476	215	-3476	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGGTCAGATTTTGAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	175708361	175737579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_175708423_175708697_175708767_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
ENSMUST00000039761.12	chr3	-	1145	4	FSM	ENSMUSG00000028133.18	ENSMUST00000039761.12	1145	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAATGATTTCTTAAAG	NA	NA	NA	NA	NA	NA	NA	NA	120965343	120949513	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_120949952_120950049_120950166_120952416_120952905_120965240
ENSMUST00000039763.14	chr10	-	1557	8	FSM	ENSMUSG00000040006.14	ENSMUST00000039763.14	1557	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTATTTTTAATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	7656681	7643710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_7644350_7646120_7646285_7649061_7649193_7649711_7649869_7650981_7651134_7653537_7653635_7655066_7655127_7656524
ENSMUST00000039769.13	chr15	-	4919	7	FSM	ENSMUSG00000060429.13	ENSMUST00000039769.13	4919	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTAGGCTTATAATTTTA	NA	NA	NA	NA	NA	NA	NA	NA	55770345	55499783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_55502824_55506050_55506242_55511252_55511450_55539699_55539840_55612583_55612792_55655429_55655647_55769419
ENSMUST00000039803.7	chr14	+	1445	9	FSM	ENSMUSG00000041765.7	ENSMUST00000039803.7	2139	9	42	652	42	-652	multi-exon	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCACGTCAGGGAAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	122116073	122257794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
ENSMUST00000039894.13	chr13	-	1844	17	FSM	ENSMUSG00000039233.13	ENSMUST00000039894.13	1844	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTTCTCTGCCCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	14214223	14172536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
ENSMUST00000039900.4	chr11	-	918	2	FSM	ENSMUSG00000032673.6	ENSMUST00000039900.4	918	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTGTCTTTAATTTG	NA	NA	NA	NA	NA	NA	NA	NA	29465033	29462875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_29463677_29464916
ENSMUST00000040005.13	chr2	-	1228	10	FSM	ENSMUSG00000040174.15	ENSMUST00000040005.13	1228	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	NA	NA	NA	NA	NA	NA	NA	NA	93841075	93810981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
ENSMUST00000040042.11	chr2	-	1150	7	FSM	ENSMUSG00000015083.12	ENSMUST00000040042.11	1150	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTTGTCGTTTTTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	25390625	25388662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_25388836_25388916_25388956_25389025_25389128_25389409_25389518_25389600_25389672_25389850_25389988_25390105
ENSMUST00000040135.9	chr10	+	1286	8	FSM	ENSMUSG00000040034.16	ENSMUST00000040135.9	1286	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAATGTTGGCTTGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	7543266	7554645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_7543446_7543765_7543889_7545316_7545395_7546702_7546884_7549348_7549485_7550769_7550922_7552003_7552127_7554331
ENSMUST00000040177.7	chr17	+	619	3	FSM	ENSMUSG00000036214.15	ENSMUST00000040177.7	976	3	27	330	-22	-330	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAAGATCACCGGGAGCG	NA	NA	NA	NA	NA	NA	NA	NA	37269510	37276184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_37269595_37275248_37275325_37275725
ENSMUST00000040254.16	chr8	+	4780	29	FSM	ENSMUSG00000036270.17	ENSMUST00000040254.16	4780	29	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTCTTTGATGTGACTA	NA	NA	NA	NA	NA	NA	NA	NA	106607512	106619857	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615230_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
ENSMUST00000040261.7	chr19	+	1228	11	FSM	ENSMUSG00000036278.8	ENSMUST00000040261.7	1228	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGTCTGGGTCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	7034177	7175422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_7034551_7042832_7042935_7043454_7043572_7162940_7162971_7173778_7173896_7174153_7174276_7174369_7174401_7174515_7174590_7174896_7174979_7175066_7175102_7175277
ENSMUST00000040284.6	chr18	+	753	3	FSM	ENSMUSG00000036299.6	ENSMUST00000040284.6	979	3	32	194	0	146	multi-exon	FALSE	canonical	NA	NA	NA	NA	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCGATGAGAAGATGTGATC	NA	NA	NA	NA	NA	NA	NA	NA	75138970	75142810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_75139086_75141721_75141898_75142348
ENSMUST00000040308.14	chr5	-	2530	8	FSM	ENSMUSG00000042594.17	ENSMUST00000040308.14	2530	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCCCTACTAGGACCCCC	NA	NA	NA	NA	NA	NA	NA	NA	121974913	121955278	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_121956157_121956278_121956451_121956527_121956743_121956822_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121974612
ENSMUST00000040313.6	chr15	-	643	2	FSM	ENSMUSG00000037525.6	ENSMUST00000040313.6	1276	2	22	611	22	-611	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCTGCGCAAGCTGGGACT	NA	NA	NA	NA	NA	NA	NA	NA	99372589	99368570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_99368961_99372336
ENSMUST00000040314.12	chr2	-	1599	12	FSM	ENSMUSG00000037197.12	ENSMUST00000040314.12	1599	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTCTCTGGTTGTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	11608073	11590247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_11590540_11590644_11590718_11591677_11591777_11592531_11592606_11593738_11593903_11595499_11595642_11598218_11598276_11600141_11600240_11601439_11601607_11602862_11602980_11605429_11605568_11607895
ENSMUST00000040344.7	chr10	+	3214	14	FSM	ENSMUSG00000034707.8	ENSMUST00000040344.7	3855	14	19	622	19	-622	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCTCTACCCACAAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	121201013	121232528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_121201264_121207048_121207109_121210262_121210470_121212112_121212179_121212540_121212640_121213926_121214095_121216022_121216106_121217077_121217197_121219244_121219349_121224005_121224108_121226528_121226637_121227275_121227387_121228585_121228747_121230952
ENSMUST00000040361.8	chr6	+	1789	4	FSM	ENSMUSG00000039347.8	ENSMUST00000040361.8	1789	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGCCTCTGCTCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	48514548	48518735	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_48514789_48516157_48516206_48516973_48517101_48517361
ENSMUST00000040372.14	chr19	+	606	4	FSM	ENSMUSG00000036372.15	ENSMUST00000040372.14	606	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATGTCCATTCTTAGGG	NA	NA	NA	NA	NA	NA	NA	NA	10181377	10185188	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_10181629_10183787_10183898_10184527_10184665_10185080
ENSMUST00000040402.14	chr17	-	1599	3	FSM	ENSMUSG00000036398.14	ENSMUST00000040402.14	1599	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGTGTTAAATACAGGC	NA	NA	NA	NA	NA	NA	NA	NA	37262605	37259247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_37260447_37260768_37260878_37262314
ENSMUST00000040404.8	chr15	-	744	3	FSM	ENSMUSG00000034634.8	ENSMUST00000040404.8	744	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGCTGTGTGGAGTCGT	NA	NA	NA	NA	NA	NA	NA	NA	74635469	74633904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_74634438_74634599_74634699_74635357
ENSMUST00000040418.9	chr11	+	1680	4	FSM	ENSMUSG00000039084.9	ENSMUST00000040418.9	1680	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	356	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCTCTCACCTATCCCTA	NA	NA	NA	NA	NA	NA	NA	NA	94455872	94459953	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_94456695_94458623_94458788_94459034_94459181_94459405
ENSMUST00000040421.11	chr5	+	925	7	FSM	ENSMUSG00000041733.11	ENSMUST00000040421.11	2037	7	29	1083	29	-1083	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCAGGCTTTCAGAGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	115417753	115433948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_115417974_115421624_115421775_115422449_115422672_115428992_115429100_115432885_115432975_115433724_115433837_115433923
ENSMUST00000040423.12	chr2	+	1691	4	FSM	ENSMUSG00000032679.13	ENSMUST00000040423.12	1691	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	293	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATTATCTTGACTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	103926145	103945699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_103926273_103934515_103934595_103941084_103941190_103944319
ENSMUST00000040428.4	chr11	-	611	3	FSM	ENSMUSG00000093989.2	ENSMUST00000040428.4	611	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCTGTCTGTGCTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	70130668	70128949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_70129297_70129763_70129841_70130481
ENSMUST00000040440.7	chr17	-	1205	6	FSM	ENSMUSG00000036438.15	ENSMUST00000040440.7	1205	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGCTCTGAATCTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	87754363	87740839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
ENSMUST00000040445.9	chr8	+	1819	1	FSM	ENSMUSG00000036442.9	ENSMUST00000040445.9	1819	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	934	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGGGTTTCGACTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	106581763	106583582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_106581800_106583600
ENSMUST00000040519.12	chr12	+	1065	5	FSM	ENSMUSG00000037787.15	ENSMUST00000040519.12	1065	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	514	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGTGCAAGTTGAGAATAA	NA	NA	NA	NA	NA	NA	NA	NA	111679694	111700654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_111679853_111689045_111689244_111690773_111690838_111696455_111696547_111700100
ENSMUST00000040560.11	chr10	-	1206	6	FSM	ENSMUSG00000040521.12	ENSMUST00000040560.11	1206	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	687	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTGTGAGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	126866709	126858200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422_126865552_126866331_126866506_126866612
ENSMUST00000040561.6	chr11	+	1338	5	FSM	ENSMUSG00000035007.6	ENSMUST00000040561.6	3223	5	0	1885	0	-1885	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCATGGACTGTATGCCT	NA	NA	NA	NA	NA	NA	NA	NA	101315910	101324614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_101316437_101320277_101320437_101322173_101322373_101322907_101323025_101324277
ENSMUST00000040577.5	chr11	+	1510	4	FSM	ENSMUSG00000038046.5	ENSMUST00000040577.5	1510	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	323	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATATGAGTGTTTGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	76134540	76141445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_76134913_76135104_76135350_76138172_76138341_76140720
ENSMUST00000040607.6	chr6	+	743	4	FSM	ENSMUSG00000034192.6	ENSMUST00000040607.6	743	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTTTTTAATGTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	91492909	91499607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_91493061_91494029_91494141_91496530_91496627_91499222
ENSMUST00000040656.8	chr13	+	1253	7	FSM	ENSMUSG00000038286.12	ENSMUST00000040656.8	1253	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	34221579	34258057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34247892_34248017_34257658
ENSMUST00000040687.12	chr11	+	978	4	FSM	ENSMUSG00000040158.13	ENSMUST00000040687.12	1523	4	187	358	0	-253	multi-exon	FALSE	canonical	NA	NA	NA	NA	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTGACATTTCAAGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	73068095	73072620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_73068169_73071214_73071335_73071556_73071635_73071913
ENSMUST00000040687.12-1	chr11	+	991	4	FSM	ENSMUSG00000040158.13	ENSMUST00000040687.12	1523	4	0	532	0	-427	multi-exon	FALSE	canonical	NA	NA	NA	NA	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATCCTGCCCTGTCATCTT	NA	NA	NA	NA	NA	NA	NA	NA	73067908	73072446	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_73068169_73071214_73071335_73071556_73071635_73071913
ENSMUST00000040715.8	chr14	+	797	3	FSM	ENSMUSG00000042485.8	ENSMUST00000040715.8	1236	3	0	439	0	-439	multi-exon	FALSE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGTATGCCCAATGTCC	NA	NA	NA	NA	NA	NA	NA	NA	30601156	30603128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_30601573_30602573_30602707_30602880
ENSMUST00000040721.9	chr5	+	2050	6	FSM	ENSMUSG00000034118.16	ENSMUST00000040721.9	2050	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAATGGTCCCGTTTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	130108210	130164570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_130108503_130130430_130131377_130143308_130143508_130158348_130158400_130163299_130163340_130164048
ENSMUST00000040735.12	chr17	-	1496	11	FSM	ENSMUSG00000036820.13	ENSMUST00000040735.12	1496	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	24382740	24374806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
ENSMUST00000040787.13	chr3	+	2517	13	FSM	ENSMUSG00000039988.15	ENSMUST00000040787.13	3903	13	52	1334	52	790	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTAAGTATCAGCACTTTA	NA	NA	NA	NA	NA	NA	NA	NA	157653102	157712337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_157653594_157666620_157666663_157667914_157668020_157677868_157677955_157678636_157678683_157680864_157680932_157694276_157694422_157697317_157697450_157700233_157700396_157705293_157705374_157706710_157706810_157709345_157709447_157711376
ENSMUST00000040789.6	chr17	+	1672	7	FSM	ENSMUSG00000024084.9	ENSMUST00000040789.6	2059	7	0	387	0	-230	multi-exon	TRUE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTCTTTTGGATTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	79359334	79397420	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_79359818_79371356_79371504_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
ENSMUST00000040821.5	chr4	+	1641	5	FSM	ENSMUSG00000032744.5	ENSMUST00000040821.5	4537	5	297	2599	297	-2599	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACGAGCTGCCTGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	123127645	123141069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_123127740_123133923_123133991_123135155_123135240_123136816_123136899_123139755
ENSMUST00000040824.2	chr3	+	404	2	FSM	ENSMUSG00000042737.10	ENSMUST00000040824.2	404	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGTGTAGTTTTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	89173858	89174384	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89173914_89174035
ENSMUST00000040835.9	chr6	-	798	3	FSM	ENSMUSG00000034203.9	ENSMUST00000040835.9	3472	3	97	2577	97	-2577	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAACCAAAAGTTGTTACT	NA	NA	NA	NA	NA	NA	NA	NA	91450431	91441730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_91442296_91444664_91444764_91450297
ENSMUST00000040872.13	chr2	+	3458	20	FSM	ENSMUSG00000027412.13	ENSMUST00000040872.13	3458	20	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGAGAACCACGGTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	160730027	160747922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_160730138_160733915_160734309_160735913_160736010_160737242_160737494_160737670_160737752_160738669_160738791_160738934_160739287_160740549_160740650_160740788_160740950_160741489_160741584_160741679_160741750_160743577_160743671_160743752_160743797_160744482_160744622_160745522_160745672_160745843_160745931_160746402_160746556_160746719_160746835_160746922_160747027_160747177
ENSMUST00000040881.14	chr16	+	1437	12	FSM	ENSMUSG00000014232.15	ENSMUST00000040881.14	1779	12	251	91	-32	45	multi-exon	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAACACTTGGGATCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	3726939	3758920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_3727018_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631
ENSMUST00000040888.12	chr3	+	704	5	FSM	ENSMUSG00000042747.13	ENSMUST00000040888.12	1172	5	468	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACCTAACTGGTGTGCGT	NA	NA	NA	NA	NA	NA	NA	NA	89153740	89157213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89153823_89154084_89154240_89154371_89154436_89156380_89156448_89156877
ENSMUST00000040914.3	chr13	+	1560	1	FSM	ENSMUSG00000036181.3	ENSMUST00000040914.3	1560	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	455	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGGACTCTTTCATACC	NA	NA	NA	NA	NA	NA	NA	NA	23922790	23924350	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_23922800_23924400
ENSMUST00000040917.14	chr9	+	259	4	FSM	ENSMUSG00000036781.14	ENSMUST00000040917.14	499	4	80	160	75	-160	multi-exon	FALSE	canonical	NA	NA	NA	NA	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAATGAGCTATGAAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	66853447	66856634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66856610
ENSMUST00000040962.6	chr7	-	1303	3	FSM	ENSMUSG00000034875.6	ENSMUST00000040962.6	2298	3	909	86	909	-86	multi-exon	FALSE	canonical	NA	NA	NA	NA	270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCATGGTCGTGCCATAG	NA	NA	NA	NA	NA	NA	NA	NA	35254820	35246695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_35247549_35250878_35251087_35254578
ENSMUST00000041003.8	chr17	-	1402	7	FSM	ENSMUSG00000036983.8	ENSMUST00000041003.8	1402	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAAACCTAACAGCTCAAA	NA	NA	NA	NA	NA	NA	NA	NA	3608056	3569530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_3570071_3571919_3572048_3586352_3586473_3593371_3593524_3595857_3595967_3605206_3605359_3607855
ENSMUST00000041005.6	chr9	+	632	6	FSM	ENSMUSG00000059412.8	ENSMUST00000041005.6	632	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGAGTGCTTATCATTC	NA	NA	NA	NA	NA	NA	NA	NA	45314435	45321576	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_45314599_45319403_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
ENSMUST00000041008.10	chr12	+	2613	12	FSM	ENSMUSG00000033373.17	ENSMUST00000041008.10	2613	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGTCTTTTTTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	76884187	76968186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_76884426_76909259_76909325_76920149_76920223_76921805_76921898_76934505_76934653_76934745_76934830_76944100_76944188_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
ENSMUST00000041022.15	chr3	-	3122	10	FSM	ENSMUSG00000042766.18	ENSMUST00000041022.15	3122	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	349	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTTTTCCTGGAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	89153204	89141483	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_89142600_89143609_89143908_89144923_89145227_89146204_89146327_89146577_89146832_89149473_89149570_89149681_89149826_89150890_89151235_89151456_89151719_89153021
ENSMUST00000041029.6	chr9	-	2971	4	FSM	ENSMUSG00000036867.8	ENSMUST00000041029.6	2971	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTTTCTTTCTTACAAA	NA	NA	NA	NA	NA	NA	NA	NA	63929341	63860357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_63861339_63914812_63914891_63919496_63919554_63927486
ENSMUST00000041045.14	chr3	+	508	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	86	475	0	-60	multi-exon	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGCCTGGATTCCTTATT	NA	NA	NA	NA	NA	NA	NA	NA	137570333	137572208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
ENSMUST00000041053.11	chr18	+	1516	10	FSM	ENSMUSG00000036880.11	ENSMUST00000041053.11	1516	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAACCTTTTCTTGTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	74912267	74939279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74931559_74932115_74932246_74934367_74934439_74937071_74937227_74938925
ENSMUST00000041111.10	chr6	-	746	3	FSM	ENSMUSG00000042541.11	ENSMUST00000041111.10	1472	3	0	726	0	-726	multi-exon	FALSE	canonical	NA	NA	NA	NA	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATTAATCATTTTAGA	NA	NA	NA	NA	NA	NA	NA	NA	6578658	6558019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_6558492_6560407_6560502_6578478
ENSMUST00000041122.11	chr4	+	672	5	FSM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGGGGTTTTTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	3938913	3943528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUST00000041160.13	chr4	+	1192	3	FSM	ENSMUSG00000038607.13	ENSMUST00000041160.13	1192	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTGTTTGGTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	59035087	59041903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_59035319_59039226_59039359_59041074
ENSMUST00000041160.13-0	chr4	+	981	3	FSM	ENSMUSG00000038607.13	ENSMUST00000041160.13	1192	3	0	211	0	-211	multi-exon	FALSE	canonical	NA	NA	NA	NA	879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGGCCTACAATTAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	59035087	59041692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_59035319_59039226_59039359_59041074
ENSMUST00000041190.17	chr15	-	1916	15	FSM	ENSMUSG00000037570.17	ENSMUST00000041190.17	1916	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTTTTATTTTTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	99149842	99140697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149742
ENSMUST00000041197.13	chr14	+	1050	7	FSM	ENSMUSG00000040997.15	ENSMUST00000041197.13	2401	7	41	1310	41	-224	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGATGCCCTGAGAGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	54496729	54505311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_54496777_54499082_54499172_54500107_54500481_54500625_54500781_54502737_54502850_54504451_54504639_54505224
ENSMUST00000041240.4	chr1	-	1763	5	FSM	ENSMUSG00000041889.8	ENSMUST00000041240.4	1763	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGAGTCCGTCCTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	135302975	135298794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_135299735_135299934_135300103_135300889_135301024_135302115_135302288_135302626
ENSMUST00000041262.14	chr12	+	676	4	FSM	ENSMUSG00000090258.8	ENSMUST00000041262.14	676	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGTATGTTTTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	76812311	76829954	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586
ENSMUST00000041266.11	chr5	-	1375	8	FSM	ENSMUSG00000038552.15	ENSMUST00000041266.11	1375	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTGACTGGTTCCTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	31453215	31450229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_31450509_31450757_31450831_31451029_31451158_31451447_31451538_31451973_31452179_31452349_31452466_31452556_31452702_31452876
ENSMUST00000041314.17	chr18	+	599	4	FSM	ENSMUSG00000037058.17	ENSMUST00000041314.17	1475	4	79	797	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATGCTTAATAAAAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	35731748	35749442	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_35731813_35743923_35744088_35746375_35746556_35749251
ENSMUST00000041318.14	chr8	+	3101	17	FSM	ENSMUSG00000036564.18	ENSMUST00000041318.14	3101	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTCGTGTTTCCTATC	NA	NA	NA	NA	NA	NA	NA	NA	96404712	96441584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_96405012_96423821_96423917_96426740_96426786_96432815_96432922_96433158_96433280_96433364_96433428_96433556_96433618_96435235_96435323_96435404_96435462_96435710_96435815_96436393_96436451_96436530_96436583_96437291_96437340_96437561_96437598_96437720_96437773_96438952_96438992_96439805
ENSMUST00000041331.4	chr19	-	4832	6	FSM	ENSMUSG00000037071.4	ENSMUST00000041331.4	4832	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	409	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	44396148	44382893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
ENSMUST00000041366.14	chr5	+	646	4	FSM	ENSMUSG00000039771.14	ENSMUST00000041366.14	646	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCAGTGTGTGGACTG	NA	NA	NA	NA	NA	NA	NA	NA	136145484	136151801	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_136145660_136148848_136148939_136150942_136151118_136151595
ENSMUST00000041369.8	chr17	+	1685	3	FSM	ENSMUSG00000037104.10	ENSMUST00000041369.8	4648	3	12	2951	12	-2828	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGCCGCTACAACAGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	87415118	87442316	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_87415476_87428175_87428237_87441049
ENSMUST00000041416.8	chr10	+	2416	7	FSM	ENSMUSG00000037440.9	ENSMUST00000041416.8	2416	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTTGGCTCTCTGTTAT	NA	NA	NA	NA	NA	NA	NA	NA	23770585	23781241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_23770990_23773190_23773322_23774305_23774499_23775291_23775584_23776482_23776842_23779283_23779455_23780375
ENSMUST00000041459.9	chr9	-	1786	3	FSM	ENSMUSG00000037190.13	ENSMUST00000041459.9	1786	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTATGCCTTCAGCGCCT	NA	NA	NA	NA	NA	NA	NA	NA	107419064	107416205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_107417585_107418201_107418240_107418695
ENSMUST00000041466.14	chr5	+	2492	4	FSM	ENSMUSG00000034173.14	ENSMUST00000041466.14	2492	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTGTCTCAAAAAAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	129924563	129932464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_129924694_129928023_129928274_129929185_129929337_129930503
ENSMUST00000041477.15	chr9	-	2223	2	FSM	ENSMUSG00000037206.16	ENSMUST00000041477.15	2223	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATTTCTGATGCTCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	58066504	58063550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_58065514_58066244
ENSMUST00000041500.8	chr2	+	2812	2	FSM	ENSMUSG00000032802.9	ENSMUST00000041500.8	2812	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAACAGTTTTGGTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	151947443	151953296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_151947868_151950908
ENSMUST00000041551.9	chr9	+	1546	10	FSM	ENSMUSG00000037257.9	ENSMUST00000041551.9	5294	10	0	3748	0	535	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTTAGTAAGTTCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	63509941	63548122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665_63543766_63546321_63546427_63546874_63546925_63547488
ENSMUST00000041582.15	chr8	-	3206	19	FSM	ENSMUSG00000038291.17	ENSMUST00000041582.15	3206	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGTGCTCAAAGGTATT	NA	NA	NA	NA	NA	NA	NA	NA	46604742	46486302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_46486860_46487438_46487540_46488574_46488757_46491491_46491559_46494353_46494472_46497004_46497170_46498222_46498337_46500327_46500469_46502402_46502535_46507355_46507518_46508884_46509161_46511503_46511636_46521092_46521275_46533258_46533330_46556551_46556739_46558155_46558329_46569218_46569436_46577098_46577184_46604598
ENSMUST00000041589.6	chr11	+	609	2	FSM	ENSMUSG00000037573.6	ENSMUST00000041589.6	2288	2	0	1679	0	-912	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGGGAGAAGGTAGACCC	NA	NA	NA	NA	NA	NA	NA	NA	94102279	94104642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_94102558_94104311
ENSMUST00000041593.15	chr2	-	2036	15	FSM	ENSMUSG00000040272.15	ENSMUST00000041593.15	2036	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTCTTCATTCTTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	93680144	93665782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_93666174_93666274_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93672893_93672961_93673263_93673334_93674547_93674619_93676091_93676152_93678261_93678532_93679889
ENSMUST00000041621.5	chr1	+	717	2	FSM	ENSMUSG00000037216.6	ENSMUST00000041621.5	1485	2	0	768	0	-768	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAAAGAGCAACGCCACTC	NA	NA	NA	NA	NA	NA	NA	NA	37911286	37914541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_37911407_37913944
ENSMUST00000041640.5	chr12	+	2456	10	FSM	ENSMUSG00000036188.5	ENSMUST00000041640.5	2456	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTTGTTTCATAATTCGT	NA	NA	NA	NA	NA	NA	NA	NA	36207112	36247290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_36207423_36215868_36215934_36220447_36220587_36226578_36226678_36232346_36232508_36236724_36236940_36237648_36237785_36243668_36243798_36244982_36245113_36246218
ENSMUST00000041659.7	chr2	+	1025	4	FSM	ENSMUSG00000039476.14	ENSMUST00000041659.7	1441	4	0	416	0	-387	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTGGAGTCAACATGGCC	NA	NA	NA	NA	NA	NA	NA	NA	30735070	30770847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_30735694_30768421_30768604_30769503_30769683_30770806
ENSMUST00000041686.10	chr19	-	1000	6	FSM	ENSMUSG00000037349.10	ENSMUST00000041686.10	1000	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTAGCTTCTGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	6973405	6970385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6972138_6972609_6973104_6973375
ENSMUST00000041830.10	chr2	+	869	4	FSM	ENSMUSG00000026857.10	ENSMUST00000041830.10	1387	4	168	350	168	-350	multi-exon	FALSE	canonical	NA	NA	NA	NA	280	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGTCAAGCCCTAGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	30698005	30712695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_30698096_30709640_30709845_30710460_30710714_30712373
ENSMUST00000041852.8	chr6	+	1470	12	FSM	ENSMUSG00000041671.14	ENSMUST00000041852.8	2831	12	24	1337	24	-1337	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCTTAAACCAAATGGACC	NA	NA	NA	NA	NA	NA	NA	NA	142291403	142307646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_142291534_142293283_142293365_142294248_142294369_142296787_142296917_142299250_142299325_142300350_142300512_142302208_142302310_142303105_142303239_142304124_142304238_142304761_142304885_142306584_142306723_142307479
ENSMUST00000041859.9	chr13	-	1713	11	FSM	ENSMUSG00000038372.15	ENSMUST00000041859.9	1713	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	359	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGTTTGCTGTGTATGTT	NA	NA	NA	NA	NA	NA	NA	NA	32522723	32003561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_32003962_32004124_32004194_32101602_32101700_32124466_32124586_32284339_32284468_32310982_32311088_32311889_32312083_32409117_32409228_32411197_32411286_32418335_32418381_32522364
ENSMUST00000041882.7	chr10	+	426	3	FSM	ENSMUSG00000035595.7	ENSMUST00000041882.7	678	3	0	252	0	-252	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAGCCTGCACAGGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	80008777	80010728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80009009_80010042_80010160_80010650
ENSMUST00000041944.9	chr11	+	2459	3	FSM	ENSMUSG00000042529.15	ENSMUST00000041944.9	2459	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATCTGGCTTGCTCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	60956629	60961953	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_60956804_60957491_60957777_60959953
ENSMUST00000041984.14	chr10	-	2092	8	FSM	ENSMUSG00000039166.17	ENSMUST00000041984.14	2092	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTTCTTACAGTTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	25175062	25046019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_25047147_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25159790_25159940_25165496_25165629_25174937
ENSMUST00000042054.3	chr13	+	2363	2	FSM	ENSMUSG00000038402.3	ENSMUST00000042054.3	2363	2	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGTTGTTCTAGGGACCC	NA	NA	NA	NA	NA	NA	NA	NA	31809798	31815386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_31811240_31814464
ENSMUST00000042055.10	chr2	+	2586	10	FSM	ENSMUSG00000039515.12	ENSMUST00000042055.10	2586	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGTGTGAGACATCTTT	NA	NA	NA	NA	NA	NA	NA	NA	30306050	30337817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_30306345_30316410_30316509_30318327_30318415_30321972_30322099_30325575_30325694_30327581_30327682_30328240_30328366_30329675_30329777_30333301_30333410_30336388
ENSMUST00000042147.6	chr5	-	1661	15	FSM	ENSMUSG00000033294.12	ENSMUST00000042147.6	2075	15	69	345	69	-345	multi-exon	FALSE	canonical	NA	NA	NA	NA	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGTACTGTATGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	110801214	110796628	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_110796850_110796931_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798313_110798399_110798451_110798810_110798846_110798977_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
ENSMUST00000042166.11	chr7	+	1452	3	FSM	ENSMUSG00000038646.14	ENSMUST00000042166.11	1452	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTAGTTTTGACAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	81412672	81419239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_81412805_81417274_81417472_81418116
ENSMUST00000042166.11-0	chr7	+	1249	3	FSM	ENSMUSG00000038646.14	ENSMUST00000042166.11	1452	3	0	203	0	-192	multi-exon	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATTTTCAAATGCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	81412672	81419036	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_81412805_81417274_81417472_81418116
ENSMUST00000042167.10	chr15	+	1496	8	FSM	ENSMUSG00000039007.11	ENSMUST00000042167.10	1923	8	44	383	44	-335	multi-exon	FALSE	canonical	NA	NA	NA	NA	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAAGCAGATGAATGTTG	NA	NA	NA	NA	NA	NA	NA	NA	33083318	33594315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_33083469_33212961_33213410_33250071_33250280_33302485_33302694_33381481_33381594_33466771_33466864_33497308_33497511_33594239
ENSMUST00000042167.10-1	chr15	+	1523	8	FSM	ENSMUSG00000039007.11	ENSMUST00000042167.10	1923	8	139	261	16	-213	multi-exon	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGAATCCCAACTCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	33083413	33594437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_33083469_33212961_33213410_33250071_33250280_33302485_33302694_33381481_33381594_33466771_33466864_33497308_33497511_33594239
ENSMUST00000042191.12	chr5	+	832	4	FSM	ENSMUSG00000034211.15	ENSMUST00000042191.12	832	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGGCAGCTTGATTTT	NA	NA	NA	NA	NA	NA	NA	NA	129792566	129795544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_129792614_129792747_129792828_129793790_129793931_129794979
ENSMUST00000042235.15	chr9	-	1794	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGTCAATGCTGAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	78389006	78385730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
ENSMUST00000042281.14	chr11	+	979	7	FSM	ENSMUSG00000042569.14	ENSMUST00000042281.14	1553	7	48	526	0	-526	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGCGGAAATCCAAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	60721504	60748723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_60721558_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
ENSMUST00000042288.8	chr13	+	2967	6	FSM	ENSMUSG00000033781.8	ENSMUST00000042288.8	4453	6	67	1419	67	-1419	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTCATAGGGGTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	3684098	3702403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_3684176_3692064_3692253_3693474_3693626_3694915_3695051_3699318_3699511_3700179
ENSMUST00000042334.16	chr17	+	830	6	FSM	ENSMUSG00000037805.16	ENSMUST00000042334.16	830	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGTGTGCCTGTGATTG	NA	NA	NA	NA	NA	NA	NA	NA	28547444	28550007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
ENSMUST00000042390.5	chr2	+	1917	13	FSM	ENSMUSG00000036646.14	ENSMUST00000042390.5	3755	13	33	1805	33	-1805	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGCCTGAGCCCAGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	25222773	25240419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238239_25238582_25238704_25239181_25239380_25239462_25239595_25240373
ENSMUST00000042391.13	chr9	+	2118	5	FSM	ENSMUSG00000037845.15	ENSMUST00000042391.13	2658	5	15	525	15	180	multi-exon	TRUE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCTGGCCGTGGAGGTA	NA	NA	NA	NA	NA	NA	NA	NA	50679550	50684123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_50679756_50679987_50680145_50681409_50681614_50681931_50682091_50682730
ENSMUST00000042392.14	chr19	+	1357	9	FSM	ENSMUSG00000037847.15	ENSMUST00000042392.14	1357	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATACTGTGTGTCTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	18609313	18629291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_18609364_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18628599
ENSMUST00000042405.8	chr7	+	1197	9	FSM	ENSMUSG00000046865.8	ENSMUST00000042405.8	1197	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	NA	NA	NA	NA	NA	NA	NA	NA	27869134	27878694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_27869244_27873928_27874112_27874209_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
ENSMUST00000042450.10	chr13	+	3187	3	FSM	ENSMUSG00000035367.10	ENSMUST00000042450.10	3855	3	437	231	0	-227	multi-exon	FALSE	canonical	NA	NA	NA	NA	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTTTGAGATAGTATCC	NA	NA	NA	NA	NA	NA	NA	NA	58550513	58558731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_58550604_58554815_58554905_58555723
ENSMUST00000042468.9	chr9	-	2082	4	FSM	ENSMUSG00000037971.11	ENSMUST00000042468.9	2082	4	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAATAAAAATAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	50679752	50674127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_50675317_50675523_50675591_50675995_50676227_50679157
ENSMUST00000042477.13	chr11	+	1106	6	FSM	ENSMUSG00000078656.12	ENSMUST00000042477.13	1106	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	878	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCCTGTTACTACTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	101144532	101150375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149735
ENSMUST00000042493.10	chr1	-	1705	5	FSM	ENSMUSG00000042111.10	ENSMUST00000042493.10	1705	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGCTCTCATTTTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	34478753	34475750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_34476692_34476807_34476940_34477930_34478014_34478123_34478228_34478308
ENSMUST00000042497.14	chr19	-	1661	10	FSM	ENSMUSG00000037916.15	ENSMUST00000042497.14	1661	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAACTTTGCTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	4062806	4057496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
ENSMUST00000042512.8	chr2	+	740	5	FSM	ENSMUSG00000037262.8	ENSMUST00000042512.8	1472	5	0	732	0	-732	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGCTCCGCCCAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	10085434	10096885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_10085556_10090540_10090636_10094923_10094968_10095051_10095175_10096528
ENSMUST00000042575.7	chr4	-	2593	3	FSM	ENSMUSG00000036822.7	ENSMUST00000042575.7	3856	3	0	1263	0	-1263	multi-exon	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGGCTCAGCCGGCTCGG	NA	NA	NA	NA	NA	NA	NA	NA	40269850	40260863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_40263082_40268303_40268502_40269673
ENSMUST00000042587.12	chr3	+	2271	3	FSM	ENSMUSG00000028023.17	ENSMUST00000042587.12	2271	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTCTGGATTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	129007620	129013237	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_129008431_129009287_129009494_129011982
ENSMUST00000042603.14	chr13	+	1980	5	FSM	ENSMUSG00000041324.15	ENSMUST00000042603.14	6390	5	0	4410	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACTAAACAAAACAACCAGA	NA	NA	NA	NA	NA	NA	NA	NA	16186435	16201796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_16186676_16186784_16186972_16189035_16189118_16191766_16192269_16200827
ENSMUST00000042658.5	chr2	-	1851	5	FSM	ENSMUSG00000039063.6	ENSMUST00000042658.5	1851	5	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCGTCTATCCACCTAACT	NA	NA	NA	NA	NA	NA	NA	NA	6217844	6193275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_6194463_6200393_6200595_6211225_6211324_6213278_6213401_6217601
ENSMUST00000042700.12	chr19	-	797	7	FSM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	NA	NA	NA	NA	NA	NA	NA	4092263	4090284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
ENSMUST00000042702.7	chr15	+	578	5	FSM	ENSMUSG00000039065.12	ENSMUST00000042702.7	1164	5	0	586	0	-586	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGACTCCAGACCACACC	NA	NA	NA	NA	NA	NA	NA	NA	31602263	31617095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_31602296_31606056_31606335_31608241_31608380_31609711_31609763_31617016
ENSMUST00000042710.8	chr18	-	791	2	FSM	ENSMUSG00000038059.8	ENSMUST00000042710.8	1990	2	411	788	411	-788	multi-exon	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCAGCAAATCAGAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	60634648	60608050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_60608658_60634464
ENSMUST00000042724.8	chr8	-	4707	10	FSM	ENSMUSG00000038250.10	ENSMUST00000042724.8	4707	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCCTACTGTCCTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	81741557	81707361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_81708610_81711066_81712430_81714115_81714223_81716635_81716730_81719824_81720019_81722310_81722470_81727681_81727784_81731960_81732091_81738795_81738932_81740383
ENSMUST00000042790.5	chr9	-	773	2	FSM	ENSMUSG00000038086.5	ENSMUST00000042790.5	773	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTGCTGCTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	50663593	50662377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_50663034_50663476
ENSMUST00000042818.11	chr15	+	1978	6	FSM	ENSMUSG00000035828.12	ENSMUST00000042818.11	2427	6	0	449	0	-449	multi-exon	TRUE	canonical	NA	NA	NA	NA	291	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTTATTGTTTAATTTAT	NA	NA	NA	NA	NA	NA	NA	NA	88746388	88749480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_88746956_88747040_88747151_88747243_88747295_88747381_88747752_88748518_88748696_88748777
ENSMUST00000042844.7	chr4	-	1793	4	FSM	ENSMUSG00000041120.7	ENSMUST00000042844.7	1793	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3022	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGTGGACTGGCTCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	138820304	138809594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_138810914_138812551_138812664_138812764_138812960_138820137
ENSMUST00000042923.9	chr10	-	1891	8	FSM	ENSMUSG00000034748.17	ENSMUST00000042923.9	1891	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTGTTACATTTATGTA	NA	NA	NA	NA	NA	NA	NA	NA	81463631	81457620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305
ENSMUST00000042974.15	chr6	+	1092	3	FSM	ENSMUSG00000035104.15	ENSMUST00000042974.15	1773	3	65	616	65	-615	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCCGAAGCGCTCAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	82018668	82069464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_82018883_82048035_82048224_82068774
ENSMUST00000042990.7	chr6	+	3328	8	FSM	ENSMUSG00000036371.7	ENSMUST00000042990.7	15474	8	706	11440	259	1985	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGCAGAGTTGTGAATG	NA	NA	NA	NA	NA	NA	NA	NA	67244313	67263280	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUST00000043045.10	chrX	+	1609	11	FSM	ENSMUSG00000039382.13	ENSMUST00000043045.10	1609	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGGGGCGTGCTTTCCCG	NA	NA	NA	NA	NA	NA	NA	NA	7588455	7594445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ENSMUST00000043050.9	chr5	+	1390	2	FSM	ENSMUSG00000036599.11	ENSMUST00000043050.9	2331	2	25	916	25	-916	multi-exon	FALSE	canonical	NA	NA	NA	NA	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATAAACTCTACGAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	140491329	140510563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_140491452_140509295
ENSMUST00000043074.14	chr19	+	508	5	FSM	ENSMUSG00000038274.14	ENSMUST00000043074.14	508	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTCTTATGTTTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	6107972	6109546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_6108032_6108275_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000043074.14-0	chr19	+	375	5	FSM	ENSMUSG00000038274.14	ENSMUST00000043074.14	508	5	8	125	0	-95	multi-exon	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGCGAATGCAGTACAAC	NA	NA	NA	NA	NA	NA	NA	NA	6107980	6109421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_6108032_6108275_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000043089.9	chr15	+	686	2	FSM	ENSMUSG00000034161.9	ENSMUST00000043089.9	1035	2	0	349	0	-349	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACGGCGATTCGAAGTTAG	NA	NA	NA	NA	NA	NA	NA	NA	76341719	76343300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76342387_76343281
ENSMUST00000043098.9	chr6	-	1223	4	FSM	ENSMUSG00000036390.9	ENSMUST00000043098.9	1223	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATTTCTCAACGTGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	67014390	67012079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_67012757_67013661_67013900_67013993_67014096_67014184
ENSMUST00000043227.13	chr14	+	2518	12	FSM	ENSMUSG00000035469.18	ENSMUST00000043227.13	3903	12	255	1130	241	-1130	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCCCCGCACCCCAATT	NA	NA	NA	NA	NA	NA	NA	NA	59438931	59473584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_59439034_59447373_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
ENSMUST00000043286.15	chr18	-	2591	10	FSM	ENSMUSG00000038425.19	ENSMUST00000043286.15	2591	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGGCTCTCACTGTAAGT	NA	NA	NA	NA	NA	NA	NA	NA	70663505	70641754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70663258
ENSMUST00000043317.7	chr10	+	1486	5	FSM	ENSMUSG00000036764.13	ENSMUST00000043317.7	3025	5	8	1531	8	-1531	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGACAACTTGAGTTCTAG	NA	NA	NA	NA	NA	NA	NA	NA	63222349	63244824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_63222555_63231563_63231643_63233017_63233158_63242780_63242986_63243967
ENSMUST00000043325.9	chr3	-	1984	7	FSM	ENSMUSG00000040151.10	ENSMUST00000043325.9	6177	7	23	4170	23	-4170	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAGTTAAAGCAGTATT	NA	NA	NA	NA	NA	NA	NA	NA	144275919	144139636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_144140476_144141222_144141381_144143355_144143454_144153030_144153170_144159712_144159799_144170807_144171047_144275494
ENSMUST00000043342.10	chr3	+	1320	8	FSM	ENSMUSG00000033554.18	ENSMUST00000043342.10	1576	8	12	244	12	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGTTTTATAATCTCC	NA	NA	NA	NA	NA	NA	NA	NA	115681843	115722737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157
ENSMUST00000043374.7	chr10	+	940	4	FSM	ENSMUSG00000040653.7	ENSMUST00000043374.7	2617	4	487	1190	0	-1190	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTAGGATCTCACAATAC	NA	NA	NA	NA	NA	NA	NA	NA	3316543	3413785	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_3316970_3373493_3373578_3375733_3375767_3413388
ENSMUST00000043378.9	chr5	-	1559	12	FSM	ENSMUSG00000039886.9	ENSMUST00000043378.9	1559	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATGGACTGTGGATGTG	NA	NA	NA	NA	NA	NA	NA	NA	135773302	135764338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_135764660_135764750_135764820_135764923_135764989_135765107_135765201_135765294_135765357_135765450_135765517_135765599_135765690_135765771_135765868_135766043_135766104_135770819_135770937_135771134_135771254_135772901
ENSMUST00000043429.12	chr4	-	1932	10	FSM	ENSMUSG00000032897.18	ENSMUST00000043429.12	1932	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	NA	NA	NA	NA	NA	NA	NA	120682903	120614634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682726
ENSMUST00000043521.5	chr16	-	3992	7	FSM	ENSMUSG00000034473.15	ENSMUST00000043521.5	3992	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGAACCTTTGCCCACTTT	NA	NA	NA	NA	NA	NA	NA	NA	35184288	35131500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_35134658_35139173_35139240_35149867_35149984_35167968_35168164_35169200_35169365_35181930_35182130_35184193
ENSMUST00000043627.8	chr11	+	632	5	FSM	ENSMUSG00000039640.8	ENSMUST00000043627.8	1316	5	0	684	0	-684	multi-exon	FALSE	canonical	NA	NA	NA	NA	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGATCAAAGCAGCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	120375438	120379207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_120375595_120376068_120376256_120376481_120376569_120378922_120379061_120379143
ENSMUST00000043654.10	chr11	+	1458	11	FSM	ENSMUSG00000045007.10	ENSMUST00000043654.10	1754	11	0	296	0	-296	multi-exon	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAACTTTGAGGAGATGCA	NA	NA	NA	NA	NA	NA	NA	NA	101046732	101052317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_101046995_101047273_101047387_101047578_101047747_101048277_101048347_101048608_101048689_101049834_101049962_101050882_101050970_101051072_101051223_101051619_101051773_101051852_101052015_101052230
ENSMUST00000043675.9	chr9	-	544	3	FSM	ENSMUSG00000038717.10	ENSMUST00000043675.9	544	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3069	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGAGTTGTCTTTGGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	44832040	44824514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_44824765_44825948_44826110_44831907
ENSMUST00000043680.9	chr11	+	1802	11	FSM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	1054	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	101010763	101017245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
ENSMUST00000043707.7	chr5	+	4207	4	FSM	ENSMUSG00000039917.11	ENSMUST00000043707.7	4207	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGGCTCAGTGAATAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	135661471	135675230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_135661773_135664848_135665257_135667943_135668095_135671883
ENSMUST00000043722.10	chr11	-	2330	6	FSM	ENSMUSG00000033880.12	ENSMUST00000043722.10	2330	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAGTTTGTTCATCCATAC	NA	NA	NA	NA	NA	NA	NA	NA	118292918	118283576	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_118284949_118287416_118287670_118288946_118289079_118289205_118289398_118290553_118290628_118292611
ENSMUST00000043760.15	chr5	+	1660	11	FSM	ENSMUSG00000041939.15	ENSMUST00000043760.15	1660	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGGCCCTGTGGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	114582366	114598652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
ENSMUST00000043767.9	chr8	+	1096	9	FSM	ENSMUSG00000038398.9	ENSMUST00000043767.9	2057	9	0	961	0	-139	multi-exon	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAACTTCTAGATGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	13835614	13848232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_13835885_13836146_13836254_13837364_13837472_13841881_13841981_13842099_13842211_13845439_13845496_13845583_13845740_13846458_13846593_13848176
ENSMUST00000043836.8	chr2	+	3552	4	FSM	ENSMUSG00000068205.15	ENSMUST00000043836.8	3552	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTGTATTATTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	140237354	140264874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_140237642_140242781_140242899_140260736_140260835_140261824
ENSMUST00000043839.5	chr1	+	982	10	FSM	ENSMUSG00000038235.5	ENSMUST00000043839.5	2518	10	44	1492	44	-1492	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCCATTTGCCTTACTC	NA	NA	NA	NA	NA	NA	NA	NA	171265146	171290679	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_171265270_171287930_171288000_171288105_171288214_171288396_171288544_171288768_171288975_171289130_171289234_171289372_171289481_171290170_171290184_171290456_171290509_171290626
ENSMUST00000043843.12	chr11	+	1518	7	FSM	ENSMUSG00000038366.16	ENSMUST00000043843.12	3540	7	107	1915	107	340	multi-exon	FALSE	canonical	NA	NA	NA	NA	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACACATCCCCAGGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	97690497	97727675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_97690689_97697650_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897
ENSMUST00000043867.11	chr3	+	398	4	FSM	ENSMUSG00000039221.11	ENSMUST00000043867.11	552	4	33	121	0	-121	multi-exon	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTCAAGATGAAGATGGTT	NA	NA	NA	NA	NA	NA	NA	NA	28859617	28861443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_28859693_28860648_28860742_28860885_28861008_28861335
ENSMUST00000043870.9	chr7	-	1650	2	FSM	ENSMUSG00000038489.9	ENSMUST00000043870.9	1650	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	693	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	141055045	141051772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_141053318_141054940
ENSMUST00000043898.8	chr7	-	708	4	FSM	ENSMUSG00000036835.8	ENSMUST00000043898.8	708	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGAGTTCTTGGGATCTT	NA	NA	NA	NA	NA	NA	NA	NA	30262666	30261289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_30261560_30261748_30261854_30262220_30262364_30262476
ENSMUST00000043907.14	chr17	+	918	3	FSM	ENSMUSG00000038880.14	ENSMUST00000043907.14	918	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	605	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGGTTTCATTACA	NA	NA	NA	NA	NA	NA	NA	NA	25114089	25115263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_25114463_25114635_25114679_25114761
ENSMUST00000043911.8	chr9	+	1683	8	FSM	ENSMUSG00000038884.15	ENSMUST00000043911.8	1683	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTAATAGCCTTAATTCC	NA	NA	NA	NA	NA	NA	NA	NA	20779937	20785603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_20780233_20780625_20780750_20780899_20780950_20782492_20782532_20782671_20782822_20784163_20784268_20784405_20784561_20784837
ENSMUST00000043914.8	chr14	+	2129	17	FSM	ENSMUSG00000021975.10	ENSMUST00000043914.8	2674	17	268	277	268	-277	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGTACTGCTGACCCCAA	NA	NA	NA	NA	NA	NA	NA	NA	65187761	65277004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422_65230563_65232430_65232518_65244694_65244816_65245439_65245575_65253978_65254091_65257764_65257946_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274794_65274933_65276721
ENSMUST00000043931.9	chr11	-	625	6	FSM	ENSMUSG00000034566.11	ENSMUST00000043931.9	625	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	NA	NA	NA	NA	NA	NA	NA	115310788	115306514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310717
ENSMUST00000043937.9	chr3	-	1067	4	FSM	ENSMUSG00000041084.9	ENSMUST00000043937.9	1067	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2274	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTGGACTTTTTGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	130503093	130489560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_130490128_130496964_130497163_130499598_130499693_130502885
ENSMUST00000043966.8	chr3	-	1484	7	FSM	ENSMUSG00000037531.9	ENSMUST00000043966.8	3364	7	0	1880	0	-1880	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGATCTGAGGAGGGCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	32791296	32781425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_32781867_32782580_32782677_32784229_32784361_32785308_32785406_32787737_32787799_32788256_32788409_32790790
ENSMUST00000043990.14	chr9	+	1571	7	FSM	ENSMUSG00000038957.14	ENSMUST00000043990.14	5708	7	15	4122	15	-4122	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGGCCGAGTCTATTTGT	NA	NA	NA	NA	NA	NA	NA	NA	57615837	57655660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_57615983_57620663_57620845_57623230_57623551_57634468_57634805_57647172_57647327_57651867_57652086_57655443
ENSMUST00000044002.10	chr5	-	2039	9	FSM	ENSMUSG00000036687.14	ENSMUST00000044002.10	2039	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTTGGGCTTTCTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	139800038	139790706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_139791497_139791936_139792132_139792659_139792830_139793374_139793467_139793548_139793625_139793711_139793803_139794111_139794278_139798719_139798948_139799807
ENSMUST00000044007.3	chr11	-	813	2	FSM	ENSMUSG00000039670.3	ENSMUST00000044007.3	813	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGCAGGGGCTTTTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	120348894	120347431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_120347989_120348638
ENSMUST00000044048.8	chr7	+	751	3	FSM	ENSMUSG00000036854.15	ENSMUST00000044048.8	1363	3	0	612	0	-612	multi-exon	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTCCCAGCTTTCCGGC	NA	NA	NA	NA	NA	NA	NA	NA	30252692	30254256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_30252958_30253686_30253810_30253893
ENSMUST00000044051.6	chr9	+	191	2	FSM	ENSMUSG00000039016.6	ENSMUST00000044051.6	518	2	0	327	0	-327	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCCGCACTGAAAACTGC	NA	NA	NA	NA	NA	NA	NA	NA	50515209	50516293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_50515340_50516232
ENSMUST00000044058.11	chr4	+	665	4	FSM	ENSMUSG00000041241.13	ENSMUST00000044058.11	3733	4	52	3016	0	238	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCCCCCCAAGCAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	138162033	138166560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_138162191_138164938_138165027_138165552_138165674_138166261
ENSMUST00000044200.11	chr6	+	2597	16	FSM	ENSMUSG00000038279.11	ENSMUST00000044200.11	2597	16	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	125108871	125121716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
ENSMUST00000044277.10	chr2	+	1616	5	FSM	ENSMUSG00000038467.16	ENSMUST00000044277.10	1616	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTGTGTGTTCAGTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	154498937	154536705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_154499292_154531437_154531616_154533129_154533245_154534468_154534596_154535863
ENSMUST00000044466.12	chr7	+	2356	14	FSM	ENSMUSG00000018995.13	ENSMUST00000044466.12	3778	14	57	1365	0	434	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATTAACCATTTAAACT	NA	NA	NA	NA	NA	NA	NA	NA	96600768	96712600	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_96601152_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96652004_96652100_96672824_96672958_96680544_96680644_96680752_96680791_96684437_96684505_96689105_96689244_96706654_96706753_96708992_96709020_96711775
ENSMUST00000044524.16-1	chr15	+	712	4	FSM	ENSMUSG00000039168.16	ENSMUST00000044524.16	1555	4	141	702	-105	95	multi-exon	FALSE	canonical	NA	NA	NA	NA	2060	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCATGGTCCTGAGAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	31224600	31273785	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_31224730_31235918_31236016_31272534_31272578_31273342
ENSMUST00000044567.4	chr3	+	1471	10	FSM	ENSMUSG00000036632.10	ENSMUST00000044567.4	1471	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTGTCCTCTTCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	54642959	54657216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_54643071_54646202_54646375_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
ENSMUST00000044579.12	chr5	-	1323	8	FSM	ENSMUSG00000033467.13	ENSMUST00000044579.12	1323	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGCGGCCAGCCATCAT	NA	NA	NA	NA	NA	NA	NA	NA	109706859	109702578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705481_109706670
ENSMUST00000044675.5	chr2	+	1373	8	FSM	ENSMUSG00000098789.8	ENSMUST00000044675.5	1373	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	119857963	119863075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862055_119862133_119862321_119862482_119862594
ENSMUST00000044681.7	chr6	+	990	3	FSM	ENSMUSG00000035199.7	ENSMUST00000044681.7	1442	3	0	452	0	-452	multi-exon	FALSE	canonical	NA	NA	NA	NA	413	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTCCCTGTAGAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	97187649	97209824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_97187958_97206497_97206716_97209360
ENSMUST00000044691.9	chr1	-	391	3	FSM	ENSMUSG00000042215.9	ENSMUST00000044691.9	1860	3	68	1401	14	-83	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGGTCAGCAAGTTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	33796808	33785965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_33786098_33787297_33787408_33796659
ENSMUST00000044746.5	chr5	-	1376	2	FSM	ENSMUSG00000040429.7	ENSMUST00000044746.5	1376	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTATTTTGTATGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	3943933	3940580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_3941898_3943874
ENSMUST00000044825.5	chr2	+	977	11	FSM	ENSMUSG00000027384.7	ENSMUST00000044825.5	1166	11	64	125	64	-125	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTGGAGAGCTAGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	140012632	140045484	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_140012854_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
ENSMUST00000044844.9	chr10	+	2726	10	FSM	ENSMUSG00000034854.9	ENSMUST00000044844.9	3971	10	61	1184	61	-1184	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTTTGCCAAGGTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	81193385	81200875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_81193721_81195915_81196127_81196932_81197072_81197147_81197334_81197858_81197952_81198038_81198132_81198521_81198693_81198766_81198862_81199386_81199518_81199603
ENSMUST00000044857.4	chr8	+	1850	2	FSM	ENSMUSG00000040236.5	ENSMUST00000044857.4	2546	2	0	696	0	-361	multi-exon	FALSE	canonical	NA	NA	NA	NA	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCCCCAGGGATCACACCG	NA	NA	NA	NA	NA	NA	NA	NA	3726298	3730559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_3726604_3729014
ENSMUST00000044858.16	chr17	+	2627	10	FSM	ENSMUSG00000039656.18	ENSMUST00000044858.16	2627	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCATTTTCTGGACTGAG	NA	NA	NA	NA	NA	NA	NA	NA	34250785	34257371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_34251198_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255834_34255939_34256140_34256247_34256357
ENSMUST00000044901.14	chr9	-	1983	13	FSM	ENSMUSG00000039607.18	ENSMUST00000044901.14	1983	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAATGGTTCCTCCGTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	117081551	116407582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_116407771_116415085_116415164_116465436_116465548_116507714_116507766_116510198_116510296_116524887_116524935_116548383_116548491_116634480_116634561_116651806_116651965_116788535_116788628_116885804_116885864_116939028_116939187_117080794
ENSMUST00000044923.15	chr12	-	2850	9	FSM	ENSMUSG00000041645.15	ENSMUST00000044923.15	2850	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGAGGGTGTTGCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	103392078	103374240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103392037
ENSMUST00000044977.10	chr10	+	1042	9	FSM	ENSMUSG00000071253.9	ENSMUST00000044977.10	3145	9	34	2069	23	-1689	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACGTATGAGCTGATGAA	NA	NA	NA	NA	NA	NA	NA	NA	62756445	62780208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_62756661_62764074_62764168_62766081_62766216_62768497_62768562_62773196_62773319_62773706_62773774_62776820_62776984_62778429_62778499_62780093
ENSMUST00000045078.13	chr4	+	910	9	FSM	ENSMUSG00000035637.15	ENSMUST00000045078.13	1280	9	66	304	66	-304	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGGCGGCTAACAACTTG	NA	NA	NA	NA	NA	NA	NA	NA	44981460	44990430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44990376
ENSMUST00000045110.14	chr1	+	6282	13	FSM	ENSMUSG00000042046.16	ENSMUST00000045110.14	6282	13	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCGTTGCCTGTTTGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	132345292	132394696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_132345609_132361836_132362226_132377049_132377714_132380824_132381058_132381798_132381883_132382969_132383147_132383597_132383728_132384062_132384220_132384606_132384740_132386054_132386169_132387613_132387729_132390650_132390786_132391061
ENSMUST00000045116.11	chr2	+	480	3	FSM	ENSMUSG00000038523.11	ENSMUST00000045116.11	704	3	39	185	0	-185	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGGTCCCGCAGTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	154390846	154391738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_154390988_154391255_154391316_154391459
ENSMUST00000045138.6	chr1	-	2538	5	FSM	ENSMUSG00000040124.6	ENSMUST00000045138.6	2538	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	423	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATGGTCTGTCATTTAA	NA	NA	NA	NA	NA	NA	NA	NA	163231238	163212476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_163214267_163219978_163220120_163222159_163222262_163224380_163224739_163231091
ENSMUST00000045153.11	chr11	+	1152	6	FSM	ENSMUSG00000034614.15	ENSMUST00000045153.11	2573	6	386	1035	-21	-416	multi-exon	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCCCTTGGAGCAGAATT	NA	NA	NA	NA	NA	NA	NA	NA	3280786	3291936	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_3281005_3281914_3282032_3282108_3282229_3283208_3283413_3283504_3283584_3291522
ENSMUST00000045247.9	chr10	+	1537	10	FSM	ENSMUSG00000035754.9	ENSMUST00000045247.9	3911	10	3	2371	3	-2371	multi-exon	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGCTGTCCAAAGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	79795988	79803666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801958_79802039_79802105_79802178_79802304_79802393_79802561_79803153_79803223_79803304
ENSMUST00000045325.14	chr7	-	1071	9	FSM	ENSMUSG00000109324.3	ENSMUST00000045325.14	1071	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTTTTCATAACTTATG	NA	NA	NA	NA	NA	NA	NA	NA	44635780	44626247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631315_44635706
ENSMUST00000045329.10	chr5	-	2346	5	FSM	ENSMUSG00000037339.18	ENSMUST00000045329.10	2346	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTCTGCCTAGATTCT	NA	NA	NA	NA	NA	NA	NA	NA	33786966	33757699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786196
ENSMUST00000045356.9	chr15	+	835	4	FSM	ENSMUSG00000041841.9	ENSMUST00000045356.9	835	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1666	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTCATAGTCCGTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	5146126	5148622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_5146167_5146768_5146905_5147100_5147186_5148048
ENSMUST00000045366.10	chr8	-	2748	7	FSM	ENSMUSG00000038506.14	ENSMUST00000045366.10	2748	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	NA	NA	NA	NA	NA	NA	NA	13337841	13305963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_13307977_13308946_13309044_13311384_13311468_13321589_13321721_13328516_13328686_13330908_13331126_13337803
ENSMUST00000045467.14	chr17	-	965	9	FSM	ENSMUSG00000073422.12	ENSMUST00000045467.14	965	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTTCTTCTTGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	34247030	34245006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596_34246815_34246975
ENSMUST00000045602.9	chr17	-	732	4	FSM	ENSMUSG00000040048.15	ENSMUST00000045602.9	732	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCTGGTGACTAAA	NA	NA	NA	NA	NA	NA	NA	NA	24943452	24941033	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_24941195_24941354_24941495_24941628_24941768_24943160
ENSMUST00000045604.4	chr2	-	776	2	FSM	ENSMUSG00000036850.5	ENSMUST00000045604.4	776	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGTTTTGAATCAAGT	NA	NA	NA	NA	NA	NA	NA	NA	24865110	24864128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_24864694_24864899
ENSMUST00000045607.12	chr4	+	2039	18	FSM	ENSMUSG00000035683.14	ENSMUST00000045607.12	2955	18	0	916	0	-472	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTGAACTGGAAGTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	44300875	44363759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
ENSMUST00000045628.15	chr10	-	1007	8	FSM	ENSMUSG00000035781.15	ENSMUST00000045628.15	1898	8	87	804	87	-618	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGACCTAATGGGGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	79752753	79746689	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_79746974_79747775_79747832_79747908_79747995_79748229_79748316_79748482_79748604_79749058_79749181_79749390_79749546_79752656
ENSMUST00000045628.15-1	chr10	-	1023	8	FSM	ENSMUSG00000035781.15	ENSMUST00000045628.15	1898	8	0	875	0	-689	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCCCTTCATGTCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	79752840	79746760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_79746974_79747775_79747832_79747908_79747995_79748229_79748316_79748482_79748604_79749058_79749181_79749390_79749546_79752656
ENSMUST00000045674.4	chr19	+	2859	1	FSM	ENSMUSG00000040105.4	ENSMUST00000045674.4	2859	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAATTTCTGCTTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	28941352	28944211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_28941400_28944200
ENSMUST00000045694.14	chr1	+	774	2	FSM	ENSMUSG00000041396.14	ENSMUST00000045694.14	1513	2	0	739	0	-739	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAGAAAACATCGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	163822457	163824073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_163822641_163823482
ENSMUST00000045697.12	chr11	+	648	4	FSM	ENSMUSG00000036860.15	ENSMUST00000045697.12	940	4	46	246	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	59093363	59096714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_59093486_59094997_59095082_59095381_59095584_59096474
ENSMUST00000045748.7	chrX	-	2115	12	FSM	ENSMUSG00000035232.9	ENSMUST00000045748.7	2115	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACACCTTGGTTTGAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	92875807	92808212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_92808862_92812494_92812635_92820914_92821029_92825072_92825184_92825751_92825854_92827385_92827463_92832499_92832578_92843719_92843810_92845814_92846000_92852476_92852549_92857532_92857675_92875452
ENSMUST00000045756.14	chr3	+	275	3	FSM	ENSMUSG00000041959.15	ENSMUST00000045756.14	685	3	83	327	83	-134	multi-exon	TRUE	canonical	NA	NA	NA	NA	1017	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAGCTTTCTATCACTAG	NA	NA	NA	NA	NA	NA	NA	NA	93462469	93471623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_93462519_93468250_93468403_93471549
ENSMUST00000045791.11	chr9	+	1049	9	FSM	ENSMUSG00000040188.11	ENSMUST00000045791.11	2340	9	31	1260	31	-1260	multi-exon	TRUE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCCTTTCAGGGGAATTA	NA	NA	NA	NA	NA	NA	NA	NA	57468256	57494818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_57468394_57484475_57484545_57484921_57485021_57486715_57486834_57488066_57488196_57488772_57488933_57490134_57490237_57494362_57494484_57494704
ENSMUST00000045802.7	chr9	+	1375	4	FSM	ENSMUSG00000040204.7	ENSMUST00000045802.7	2188	4	125	688	-50	-688	multi-exon	FALSE	canonical	NA	NA	NA	NA	301	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTTGGAACTCACTTG	NA	NA	NA	NA	NA	NA	NA	NA	65797643	65809860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_65797757_65798013_65798092_65800653_65800817_65808839
ENSMUST00000045855.9	chr6	-	1058	4	FSM	ENSMUSG00000042770.9	ENSMUST00000045855.9	1058	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGACAGTTTTAAATTATT	NA	NA	NA	NA	NA	NA	NA	NA	135145213	135114519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_135115062_135129818_135130000_135132148_135132288_135145017
ENSMUST00000045887.9	chr10	-	1084	3	FSM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTGGCTCTGTAACGG	NA	NA	NA	NA	NA	NA	NA	NA	71180784	71166309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_71166957_71172043_71172250_71180553
ENSMUST00000045897.15	chr1	+	410	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	81	725	0	-222	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGAAGACCGAGGAGGATG	NA	NA	NA	NA	NA	NA	NA	NA	86454528	86457709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
ENSMUST00000045909.8	chr13	+	1220	2	FSM	ENSMUSG00000041995.9	ENSMUST00000045909.8	1894	2	0	674	0	-674	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTTTGCCTGGATGAGA	NA	NA	NA	NA	NA	NA	NA	NA	95461744	95473675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_95461853_95472563
ENSMUST00000045931.12	chr12	+	2597	12	FSM	ENSMUSG00000042472.12	ENSMUST00000045931.12	2597	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTTTGGCTCTTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	84363625	84390497	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
ENSMUST00000046114.5	chr10	-	604	3	FSM	ENSMUSG00000034932.5	ENSMUST00000046114.5	604	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCATGCCCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	81102768	81100546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_81100832_81101484_81101642_81102606
ENSMUST00000046122.11	chr5	+	2267	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAGTTCTGTGAAGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	45650715	45670033	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
ENSMUST00000046207.9	chr12	+	1180	4	FSM	ENSMUSG00000037361.9	ENSMUST00000046207.9	1180	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTTTCTCTTGTAA	NA	NA	NA	NA	NA	NA	NA	NA	4867543	4877659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_4867820_4870593_4870713_4876757_4876897_4877013
ENSMUST00000046303.12	chr6	+	966	5	FSM	ENSMUSG00000032652.14	ENSMUST00000046303.12	3629	5	74	2589	-27	182	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCACTTCTTTTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	134807190	134833305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_134807408_134826065_134826264_134828042_134828188_134829240_134829278_134832936
ENSMUST00000046340.9	chr12	+	790	8	FSM	ENSMUSG00000042523.13	ENSMUST00000046340.9	790	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTGTCTATTTTAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	84161144	84185231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_84161174_84167928_84168096_84171248_84171359_84173735_84173792_84178105_84178162_84182340_84182468_84183270_84183412_84185127
ENSMUST00000046433.7	chrX	+	1223	1	FSM	ENSMUSG00000036537.7	ENSMUST00000046433.7	1223	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTCTTTCTTTCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	36454897	36456120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_36454900_36456100
ENSMUST00000046490.14	chr9	+	1840	6	FSM	ENSMUSG00000040652.17	ENSMUST00000046490.14	1840	6	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTCTGTCTTTTTATTC	NA	NA	NA	NA	NA	NA	NA	NA	65583829	65597582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_65584048_65593477_65593551_65593554_65593636_65595079_65595256_65596102_65596189_65596376
ENSMUST00000046497.8	chr17	+	1190	4	FSM	ENSMUSG00000040658.8	ENSMUST00000046497.8	1190	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	721	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCACGGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	46807636	46810550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_46807899_46809350_46809420_46809568_46809680_46809802
ENSMUST00000046498.3	chr4	-	1721	2	FSM	ENSMUSG00000042357.3	ENSMUST00000046498.3	1721	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAGAGGGGCCCTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	127251974	127248601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_127250167_127251818
ENSMUST00000046506.7	chr19	+	1008	3	FSM	ENSMUSG00000040663.10	ENSMUST00000046506.7	1847	3	119	720	119	-720	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGAGGCGATGCCTGAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	4264410	4272824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_4264555_4270231_4270399_4272127
ENSMUST00000046515.15	chr3	+	2739	5	FSM	ENSMUSG00000027698.15	ENSMUST00000046515.15	4480	5	39	1702	0	-1702	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGATATTTTATTATGTA	NA	NA	NA	NA	NA	NA	NA	NA	27237152	27297405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_27237365_27276816_27277046_27280221_27280292_27293680_27293853_27295349
ENSMUST00000046549.5	chr17	-	1420	3	FSM	ENSMUSG00000040694.5	ENSMUST00000046549.5	1420	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGGCCTGTTCTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	48739958	48726258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_48726662_48729968_48730534_48739506
ENSMUST00000046558.8	chr4	+	608	6	FSM	ENSMUSG00000063172.14	ENSMUST00000046558.8	608	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCACTCTGATTCCATTTT	NA	NA	NA	NA	NA	NA	NA	NA	107111121	107137125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_107111193_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
ENSMUST00000046587.8	chr9	-	3225	7	FSM	ENSMUSG00000040722.8	ENSMUST00000046587.8	3225	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTCTGTGTTACTTGT	NA	NA	NA	NA	NA	NA	NA	NA	57375341	57348609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375215
ENSMUST00000046614.10	chr3	-	1596	6	FSM	ENSMUSG00000039131.16	ENSMUST00000046614.10	1596	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTGGGTATTTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	151871867	151799475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_151799933_151808255_151808338_151813577_151813685_151833672_151833854_151843209_151843396_151871284
ENSMUST00000046638.10	chr10	-	2033	12	FSM	ENSMUSG00000036009.17	ENSMUST00000046638.10	2033	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCAATGTTCTTGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	105677239	105599049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661858_105662453_105665708_105665816_105668711_105668877_105676936
ENSMUST00000046644.7	chr13	+	559	4	FSM	ENSMUSG00000042043.7	ENSMUST00000046644.7	559	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAATTTTCAGTTGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	94925417	94979430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_94925511_94968867_94968974_94973615_94973703_94979157
ENSMUST00000046644.7-0	chr13	+	423	4	FSM	ENSMUSG00000042043.7	ENSMUST00000046644.7	559	4	0	136	0	43	multi-exon	FALSE	canonical	NA	NA	NA	NA	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTTTTCAGCCACTGCT	NA	NA	NA	NA	NA	NA	NA	NA	94925417	94979294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_94925511_94968867_94968974_94973615_94973703_94979157
ENSMUST00000046651.7	chr17	+	1135	6	FSM	ENSMUSG00000040771.15	ENSMUST00000046651.7	1135	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGAACGTCTGTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	48717107	48724294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_48717266_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUST00000046735.11	chr9	-	1391	6	FSM	ENSMUSG00000040813.17	ENSMUST00000046735.11	1391	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGATTTGAGTTGGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	106563114	106535950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106563033
ENSMUST00000046754.15	chr17	+	920	5	FSM	ENSMUSG00000023861.18	ENSMUST00000046754.15	920	5	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	1359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATTTGAGTGTGACTAT	NA	NA	NA	NA	NA	NA	NA	NA	8502627	8516489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_8502794_8515358_8515363_8515366_8515464_8515655_8515789_8515969
ENSMUST00000046770.10	chr1	-	742	4	FSM	ENSMUSG00000037499.10	ENSMUST00000046770.10	742	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGTGTATGGTTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	191050391	191038985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_191039287_191042115_191042220_191043656_191043718_191050115
ENSMUST00000046831.11	chr9	-	785	4	FSM	ENSMUSG00000040883.19	ENSMUST00000046831.11	785	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCCATGGTCATTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	21838758	21832304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838587
ENSMUST00000046839.10	chr17	-	1776	3	FSM	ENSMUSG00000040888.11	ENSMUST00000046839.10	1776	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCTGGTTTCTGTGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	24915130	24912163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_24913417_24914227_24914425_24914804
ENSMUST00000046863.12	chr7	+	928	7	FSM	ENSMUSG00000042289.12	ENSMUST00000046863.12	1828	7	42	858	32	-858	multi-exon	TRUE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCCACCCACTGCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	127399817	127402116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407_127401571_127401957
ENSMUST00000046890.12	chr7	+	1525	6	FSM	ENSMUSG00000038618.13	ENSMUST00000046890.12	1525	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	140795772	140798571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_140795854_140796633_140796765_140796912_140797626_140797798_140797931_140798002_140798082_140798182
ENSMUST00000046916.9	chr8	-	2593	9	FSM	ENSMUSG00000037725.9	ENSMUST00000046916.9	2593	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	393	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGAAACAAATGAGAGTTA	NA	NA	NA	NA	NA	NA	NA	NA	22675835	22658175	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675699
ENSMUST00000046941.8	chr8	+	1528	6	FSM	ENSMUSG00000039328.12	ENSMUST00000046941.8	3582	6	11	2043	1	-194	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGGAGGATACCATAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	31601858	31619467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_31602201_31608458_31608616_31614879_31614926_31615193_31615236_31618282_31618363_31618606
ENSMUST00000046945.13	chr10	+	1556	9	FSM	ENSMUSG00000035863.15	ENSMUST00000046945.13	2651	9	0	1095	0	-1094	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCCCTCTAAGAATGGGG	NA	NA	NA	NA	NA	NA	NA	NA	79629405	79655635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_79629575_79642473_79642526_79642867_79642949_79643411_79643543_79645303_79645455_79648176_79648199_79651018_79651076_79652625_79652758_79654874
ENSMUST00000046955.7	chr11	+	1501	8	FSM	ENSMUSG00000078970.6	ENSMUST00000046955.7	2002	8	0	501	0	-501	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTGATCATCAGTATCT	NA	NA	NA	NA	NA	NA	NA	NA	17161917	17183295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_17162147_17169013_17169115_17172196_17172328_17174548_17174651_17177160_17177277_17178140_17178276_17179768_17179867_17182706
ENSMUST00000046974.5	chr13	+	1798	10	FSM	ENSMUSG00000037816.11	ENSMUST00000046974.5	1798	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGAGACACATTCCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	50571899	50587805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_50572024_50573875_50573914_50577237_50577399_50577787_50577907_50579592_50579803_50580657_50580817_50585575_50585787_50586206_50586383_50586463_50586592_50587333
ENSMUST00000046999.12	chr5	+	887	6	FSM	ENSMUSG00000040532.15	ENSMUST00000046999.12	1493	6	407	199	250	-15	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCCAAGACTTCATGGATG	NA	NA	NA	NA	NA	NA	NA	NA	135038559	135040830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_135038694_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
ENSMUST00000047040.4	chr7	-	1662	2	FSM	ENSMUSG00000037060.4	ENSMUST00000047040.4	1662	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2844	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTTTAGATCTTGTTA	NA	NA	NA	NA	NA	NA	NA	NA	105131507	105129289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_105130427_105130982
ENSMUST00000047057.9	chr19	+	557	6	FSM	ENSMUSG00000041035.10	ENSMUST00000047057.9	1353	6	20	776	20	-776	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAAGGAGTTAAAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	45549073	45565950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_45549147_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
ENSMUST00000047173.10	chr9	+	2207	2	FSM	ENSMUSG00000041124.12	ENSMUST00000047173.10	2731	2	0	524	0	-524	multi-exon	FALSE	canonical	NA	NA	NA	NA	1726	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGTTGAAATGATAGTAGT	NA	NA	NA	NA	NA	NA	NA	NA	4383534	4386337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_4384143_4384738
ENSMUST00000047177.4	chr2	+	489	2	FSM	ENSMUSG00000036992.11	ENSMUST00000047177.4	956	2	0	467	0	-467	multi-exon	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTAGACTGCCAGCCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	148514545	148517480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_148514756_148517201
ENSMUST00000047196.14	chr5	+	2808	6	FSM	ENSMUSG00000040557.15	ENSMUST00000047196.14	2808	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTTTTTACATTTATAT	NA	NA	NA	NA	NA	NA	NA	NA	134961221	134971491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_134961265_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
ENSMUST00000047218.5	chr14	+	1565	8	FSM	ENSMUSG00000033589.5	ENSMUST00000047218.5	1565	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	499	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTCTCTTCACATCTC	NA	NA	NA	NA	NA	NA	NA	NA	70782793	70786373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_70783179_70783916_70783990_70784369_70784447_70784554_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
ENSMUST00000047281.10	chr8	+	902	3	FSM	ENSMUSG00000041203.10	ENSMUST00000047281.10	902	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTTGGTTTATCTT	NA	NA	NA	NA	NA	NA	NA	NA	85753451	85756915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_85753864_85756167_85756246_85756503
ENSMUST00000047356.11	chr7	-	1816	3	FSM	ENSMUSG00000038539.16	ENSMUST00000047356.11	1816	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGTCTTATCTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	44466082	44461679	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44462945_44464412_44464707_44465825
ENSMUST00000047368.8	chr3	-	875	8	FSM	ENSMUSG00000033752.8	ENSMUST00000047368.8	875	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	84063093	83995239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_83995482_84000861_84000907_84012241_84012357_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049072_84062968
ENSMUST00000047373.6	chr11	+	861	2	FSM	ENSMUSG00000041287.6	ENSMUST00000047373.6	861	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTGTCCCATTTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	69546139	69547553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69546726_69547278
ENSMUST00000047373.6-0	chr11	+	705	2	FSM	ENSMUSG00000041287.6	ENSMUST00000047373.6	861	2	51	105	36	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCAGGGACGCCCAGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	69546190	69547448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69546726_69547278
ENSMUST00000047393.7	chr7	+	1352	3	FSM	ENSMUSG00000042340.7	ENSMUST00000047393.7	1352	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTCCATGTGGGGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	127311907	127317364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_127311952_127313096_127313216_127316175
ENSMUST00000047419.8	chr15	+	837	4	FSM	ENSMUSG00000041736.8	ENSMUST00000047419.8	837	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5667	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCTGTACTTAGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	83447792	83458404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_83447846_83455585_83455797_83456400_83456540_83457970
ENSMUST00000047429.9	chr16	+	846	3	FSM	ENSMUSG00000039680.11	ENSMUST00000047429.9	846	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2466	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACGGCTGTATTGCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	91855157	91909115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_91855369_91896481_91896622_91908620
ENSMUST00000047436.11	chr17	-	1504	13	FSM	ENSMUSG00000041319.15	ENSMUST00000047436.11	1504	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGCATTTTATTCCC	NA	NA	NA	NA	NA	NA	NA	NA	23892816	23887591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487
ENSMUST00000047436.11-0	chr17	-	1267	13	FSM	ENSMUSG00000041319.15	ENSMUST00000047436.11	1504	13	237	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGCATTTTATTCCC	NA	NA	NA	NA	NA	NA	NA	NA	23892579	23887591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487
ENSMUST00000047463.15	chr11	-	4074	21	FSM	ENSMUSG00000033389.17	ENSMUST00000047463.15	4074	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGCACATGGTCTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	65053787	64892864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_64894277_64896279_64896332_64898888_64899267_64900707_64900866_64902696_64902925_64912766_64912948_64913951_64914044_64915016_64915131_64917629_64917711_64922476_64922559_64922909_64923022_64929441_64929570_64929976_64930059_64932267_64932337_64943924_64944043_64948122_64948200_64950649_64950762_64957905_64957983_64965262_64965368_64965996_64966037_65053411
ENSMUST00000047521.7	chr2	+	1554	12	FSM	ENSMUSG00000039787.14	ENSMUST00000047521.7	2715	12	50	1111	50	-1111	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAAGCCTTCTCAGCTAG	NA	NA	NA	NA	NA	NA	NA	NA	29759555	29771741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_29759738_29761034_29761146_29761286_29761405_29762574_29762710_29762819_29763025_29765616_29765737_29765999_29766077_29766172_29766280_29768015_29768149_29770624_29770753_29770926_29771131_29771707
ENSMUST00000047531.16	chr6	+	1562	4	FSM	ENSMUSG00000039958.18	ENSMUST00000047531.16	1562	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGAACTCAAGTGTTATC	NA	NA	NA	NA	NA	NA	NA	NA	149043010	149052669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_149043203_149045531_149045941_149048655_149048787_149051839
ENSMUST00000047558.14	chr7	+	3016	14	FSM	ENSMUSG00000038943.17	ENSMUST00000047558.14	3016	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTTGTCTTCAATGG	NA	NA	NA	NA	NA	NA	NA	NA	79944198	79966007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960920_79961964_79962076_79962779_79962957_79964861
ENSMUST00000047611.4	chr17	+	1079	6	FSM	ENSMUSG00000041429.4	ENSMUST00000047611.4	1079	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTGGCCCGTTGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	24851655	24857811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_24851829_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
ENSMUST00000047616.10	chr11	-	1668	6	FSM	ENSMUSG00000056962.12	ENSMUST00000047616.10	1668	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	116734275	116728257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_116728590_116729815_116729955_116731235_116731372_116731894_116732182_116733157_116733547_116733890
ENSMUST00000047632.14	chr2	-	2971	5	FSM	ENSMUSG00000036160.14	ENSMUST00000047632.14	2971	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTTTTTATTTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	26792891	26780446	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792705
ENSMUST00000047672.9	chr10	-	1959	16	FSM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	NA	NA	NA	NA	NA	NA	NA	NA	116899719	116886905	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
ENSMUST00000047749.7	chr8	-	1587	4	FSM	ENSMUSG00000036934.10	ENSMUST00000047749.7	1587	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGCATACCAGTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	86159462	86135387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_86136520_86138741_86138925_86153488_86153586_86159287
ENSMUST00000047749.7-0	chr8	-	646	4	FSM	ENSMUSG00000036934.10	ENSMUST00000047749.7	1587	4	116	825	27	-825	multi-exon	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACCAAGGATCATTATCA	NA	NA	NA	NA	NA	NA	NA	NA	86159346	86136212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_86136520_86138741_86138925_86153488_86153586_86159287
ENSMUST00000047768.11	chr8	-	2253	10	FSM	ENSMUSG00000039396.12	ENSMUST00000047768.11	2253	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTCTTTTGTAAGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	54092100	54039901	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_54040363_54041959_54042135_54052133_54052555_54053985_54054156_54058667_54058835_54060362_54060438_54061749_54061964_54062438_54062574_54076652_54076778_54091790
ENSMUST00000047885.14	chr10	-	2743	12	FSM	ENSMUSG00000039480.15	ENSMUST00000047885.14	2743	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTGTATTATTGAATA	NA	NA	NA	NA	NA	NA	NA	NA	34294548	34179604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34274109_34274195_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
ENSMUST00000047910.15	chr10	-	2015	11	FSM	ENSMUSG00000036112.16	ENSMUST00000047910.15	4424	11	-153	2562	-153	-111	multi-exon	FALSE	canonical	NA	NA	NA	NA	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCCATATTCTTACTTGG	NA	NA	NA	NA	NA	NA	NA	NA	93725829	93696912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
ENSMUST00000047910.15-1	chr10	-	2032	11	FSM	ENSMUSG00000036112.16	ENSMUST00000047910.15	4424	11	-480	2872	-480	-421	multi-exon	FALSE	canonical	NA	NA	NA	NA	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTATTAAAACTTAGTC	NA	NA	NA	NA	NA	NA	NA	NA	93726156	93697222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
ENSMUST00000047951.9	chr4	+	899	6	FSM	ENSMUSG00000041556.9	ENSMUST00000047951.9	1288	6	0	389	0	-389	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTACTGGAAGGGCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	148245077	148250492	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_148245169_148248531_148248913_148249282_148249413_148249484_148249581_148250100_148250231_148250421
ENSMUST00000047954.15	chr18	+	1596	12	FSM	ENSMUSG00000024302.17	ENSMUST00000047954.15	1596	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTCTGAGTGGGCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	23548566	23737288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_23548683_23608172_23608300_23668218_23668287_23678742_23678824_23702618_23702833_23716140_23716227_23723245_23723401_23726028_23726135_23728515_23728683_23730490_23730616_23735647_23735732_23737021
ENSMUST00000047978.9	chr1	+	800	2	FSM	ENSMUSG00000042229.10	ENSMUST00000047978.9	2861	2	0	2061	0	-2061	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTGAAACTCCACCTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	134422385	134434451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_134422548_134433813
ENSMUST00000047997.8	chr11	+	3546	2	FSM	ENSMUSG00000038560.8	ENSMUST00000047997.8	3546	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACACTCTCGCTTTGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	96904219	96915560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_96904437_96912231
ENSMUST00000048026.10	chr6	-	1744	2	FSM	ENSMUSG00000038210.11	ENSMUST00000048026.10	2287	2	543	0	543	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTTTCAATACTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	52222247	52219085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_52220573_52221990
ENSMUST00000048096.12	chr4	+	1201	3	FSM	ENSMUSG00000039005.14	ENSMUST00000048096.12	4077	3	0	2876	0	-2876	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATCTAGAAGATGTTC	NA	NA	NA	NA	NA	NA	NA	NA	66745820	66758161	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_66746159_66752130_66752298_66757465
ENSMUST00000048128.15	chr10	+	1481	3	FSM	ENSMUSG00000035011.16	ENSMUST00000048128.15	5938	3	295	4162	-12	-383	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTGAAGAACCACATGCG	NA	NA	NA	NA	NA	NA	NA	NA	80972399	80983894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80972534_80979795_80981052_80983803
ENSMUST00000048138.8	chr3	+	569	4	FSM	ENSMUSG00000042312.11	ENSMUST00000048138.8	715	4	0	146	0	-146	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGGAGAGCTGGCAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	90421741	90431742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_90421773_90422064_90422327_90423156_90423350_90431659
ENSMUST00000048139.12	chr11	-	1891	10	FSM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTCATTGTGTCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	69470150	69452584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
ENSMUST00000048197.10	chr19	-	1344	5	FSM	ENSMUSG00000041845.12	ENSMUST00000048197.10	1344	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACATTCAAAGAGCTTAGC	NA	NA	NA	NA	NA	NA	NA	NA	4489460	4475486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4476285_4476654_4476790_4482082_4482193_4482795_4482884_4489247
ENSMUST00000048208.10	chr14	+	1721	6	FSM	ENSMUSG00000034795.15	ENSMUST00000048208.10	1721	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTCCACATTGAAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	77274211	77349644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_77274412_77305299_77305394_77306276_77306390_77329107_77329507_77330209_77330327_77348846
ENSMUST00000048209.16	chr7	+	1588	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19978	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	NA	NA	NA	NA	NA	NA	NA	46495262	46505051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
ENSMUST00000048216.6	chr8	+	479	2	FSM	ENSMUSG00000040396.13	ENSMUST00000048216.6	5074	2	0	4595	0	-4595	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCAGGTATCTTATATAA	NA	NA	NA	NA	NA	NA	NA	NA	10027716	10037560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_10028020_10037384
ENSMUST00000048249.8	chr17	+	528	4	FSM	ENSMUSG00000041881.14	ENSMUST00000048249.8	528	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1593	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTTTTCTTAGTATTTA	NA	NA	NA	NA	NA	NA	NA	NA	34043545	34057291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_34043655_34044574_34044625_34048640_34048791_34057072
ENSMUST00000048260.15	chr18	-	2374	14	FSM	ENSMUSG00000041891.17	ENSMUST00000048260.15	3581	14	21	1186	3	640	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTAGTGTCTTGTGTGATT	NA	NA	NA	NA	NA	NA	NA	NA	66135689	66114994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_66115782_66116895_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
ENSMUST00000048289.14	chr10	+	1392	2	FSM	ENSMUSG00000037868.16	ENSMUST00000048289.14	2965	2	61	1512	60	-1512	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTCGGATCTGCATGCG	NA	NA	NA	NA	NA	NA	NA	NA	67373759	67376506	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_67374220_67375574
ENSMUST00000048371.15	chr14	+	301	3	FSM	ENSMUSG00000022010.20	ENSMUST00000048371.15	4818	3	3241	1276	3241	-444	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTAATAGAGAAAAACTCC	NA	NA	NA	NA	NA	NA	NA	NA	76656267	76743926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_76656450_76742688_76742738_76743856
ENSMUST00000048377.11	chr1	-	6327	24	FSM	ENSMUSG00000040297.13	ENSMUST00000048377.11	6327	24	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAATCTTCGTGTATCT	NA	NA	NA	NA	NA	NA	NA	NA	161704251	161643682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_161646379_161647963_161648020_161655225_161655318_161655724_161655880_161656804_161656910_161660984_161661073_161661604_161662763_161665287_161665379_161666322_161666392_161671570_161671637_161672357_161672450_161672871_161672928_161673128_161673150_161674773_161674880_161676210_161676319_161679843_161679912_161680379_161680517_161681283_161681408_161684389_161684541_161684912_161685051_161686918_161687074_161689760_161689872_161691482_161691595_161703879
ENSMUST00000048393.8	chr15	+	1270	3	FSM	ENSMUSG00000037204.8	ENSMUST00000048393.8	1270	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	801	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTTGGCCTGTGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	101182152	101188826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_101182427_101184813_101185132_101188148
ENSMUST00000048493.12	chr2	-	4744	25	FSM	ENSMUSG00000034032.16	ENSMUST00000048493.12	4744	25	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGACTGTTTTGTCACA	NA	NA	NA	NA	NA	NA	NA	NA	119618018	119594440	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
ENSMUST00000048568.6	chr9	-	1025	2	FSM	ENSMUSG00000042106.6	ENSMUST00000048568.6	1025	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGTCCCATACTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	107863078	107861421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_107862264_107862895
ENSMUST00000048615.13	chr14	+	1786	6	FSM	ENSMUSG00000115338.3	ENSMUST00000048615.13	2942	6	221	935	17	-935	multi-exon	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATGGCTATTCTTGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	51181979	51189934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_51182051_51185308_51185479_51187714_51187819_51187999_51188176_51188288_51188480_51188860
ENSMUST00000048655.8	chr1	+	2060	4	FSM	ENSMUSG00000039384.9	ENSMUST00000048655.8	2792	4	0	732	0	-732	multi-exon	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTAGAGTTTTGAGTAA	NA	NA	NA	NA	NA	NA	NA	NA	183766577	183807101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_183766767_183768997_183769850_183801048_183801421_183806454
ENSMUST00000048657.10	chr14	+	3546	23	FSM	ENSMUSG00000039367.12	ENSMUST00000048657.10	4461	23	35	880	0	-867	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCATGTCCTGCTGATCG	NA	NA	NA	NA	NA	NA	NA	NA	20724410	20744040	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
ENSMUST00000048685.13	chr9	-	1256	7	FSM	ENSMUSG00000042210.18	ENSMUST00000048685.13	1256	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTTGTGTTTCCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	106324877	106317249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322851_106322969_106323029_106324729
ENSMUST00000048687.11	chrX	+	443	3	FSM	ENSMUSG00000042712.11	ENSMUST00000048687.11	1019	3	0	576	0	-576	multi-exon	FALSE	canonical	NA	NA	NA	NA	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGATGATCTGTTTAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	135145827	135147312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_135145977_135146449_135146516_135147084
ENSMUST00000048698.14	chr5	-	2304	15	FSM	ENSMUSG00000036980.14	ENSMUST00000048698.14	2304	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	NA	NA	NA	NA	NA	NA	NA	NA	138185488	138176878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185431
ENSMUST00000048702.7	chr13	-	2990	15	FSM	ENSMUSG00000042167.7	ENSMUST00000048702.7	2990	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTTGAGGTGTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	93328791	93282790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_93284174_93285388_93285469_93287191_93287284_93291432_93291570_93296152_93296197_93304433_93304563_93304898_93304976_93308330_93308401_93311147_93311227_93312026_93312119_93312205_93312321_93320586_93320825_93322315_93322406_93322810_93322985_93328601
ENSMUST00000048731.6	chr7	-	2277	6	FSM	ENSMUSG00000039043.6	ENSMUST00000048731.6	2277	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	388	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGACTGAGGCTTTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	79585107	79575108	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_79576599_79577373_79577538_79577919_79578127_79579320_79579454_79581550_79581627_79584900
ENSMUST00000048807.12	chr11	+	2184	3	FSM	ENSMUSG00000040599.14	ENSMUST00000048807.12	3003	3	280	539	280	-539	multi-exon	FALSE	canonical	NA	NA	NA	NA	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGCAGCCAGGACTAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	70910716	70917658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_70911016_70915375_70915538_70915935
ENSMUST00000048824.9	chr9	+	531	1	FSM	ENSMUSG00000042293.9	ENSMUST00000048824.9	531	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTGGTGTGACGGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	48406741	48407272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_48406700_48407300
ENSMUST00000048892.14	chr4	+	4919	5	FSM	ENSMUSG00000039662.17	ENSMUST00000048892.14	4919	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGGAGTCCTGTATCAG	NA	NA	NA	NA	NA	NA	NA	NA	152381683	152391578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_152382026_152383141_152383231_152384127_152384298_152384993_152385212_152387478
ENSMUST00000048914.8	chr8	+	154	2	FSM	ENSMUSG00000034880.8	ENSMUST00000048914.8	607	2	0	453	0	-180	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTCTCCCTGCAGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	71917602	71917938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71917712_71917893
ENSMUST00000048915.11	chr3	+	736	6	FSM	ENSMUSG00000038374.11	ENSMUST00000048915.11	2608	6	40	1832	33	-1832	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAAGATCCTTCTGTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	96537288	96539275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_96537345_96537617_96537678_96537795_96537871_96538181_96538319_96538747_96538885_96539004
ENSMUST00000048994.7	chr17	-	1447	4	FSM	ENSMUSG00000042419.9	ENSMUST00000048994.7	1447	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGAGTCTCCTCTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	35454768	35439150	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_35439953_35440112_35440335_35453927_35454208_35454625
ENSMUST00000049020.9	chr7	+	2500	3	FSM	ENSMUSG00000041037.9	ENSMUST00000049020.9	6083	3	0	3583	0	-3583	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGTCAGTCATTTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	24230113	24234442	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_24230330_24230808_24231341_24232690
ENSMUST00000049040.14	chr5	+	2948	3	FSM	ENSMUSG00000037905.14	ENSMUST00000049040.14	6473	3	0	3525	0	-3525	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATTTTAATTTTTACAT	NA	NA	NA	NA	NA	NA	NA	NA	125518631	125533909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_125518957_125528733_125528837_125531389
ENSMUST00000049117.7	chr1	-	443	1	FSM	ENSMUSG00000072978.4	ENSMUST00000049117.7	443	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	257	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCAAGGCCCCGGCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	78945796	78945353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_78945400_78945800
ENSMUST00000049124.10	chr6	+	1570	6	FSM	ENSMUSG00000038527.10	ENSMUST00000049124.10	3010	6	0	1440	0	-1440	multi-exon	TRUE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGACCCCATTTAAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	124470071	124486162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_124470190_124470773_124471003_124482189_124482380_124483850_124483953_124484048_124484124_124485306
ENSMUST00000049138.8	chr5	+	1742	5	FSM	ENSMUSG00000032840.8	ENSMUST00000049138.8	5649	5	0	3907	0	-3907	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACCCTTCCAGTGGACCA	NA	NA	NA	NA	NA	NA	NA	NA	118383291	118400251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_118383524_118393734_118393892_118397040_118397193_118397439_118397554_118399164
ENSMUST00000049166.5	chr6	-	1516	4	FSM	ENSMUSG00000032757.7	ENSMUST00000049166.5	1516	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	344	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTGTTCTTGGCAT	NA	NA	NA	NA	NA	NA	NA	NA	4086972	4076898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_4078037_4079960_4080018_4082457_4082583_4086776
ENSMUST00000049242.9	chr10	+	2220	5	FSM	ENSMUSG00000037151.9	ENSMUST00000049242.9	3216	5	0	996	0	-977	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGCAGCTTGCTAAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	61311579	61417574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_61311669_61318114_61318262_61362838_61362989_61383826_61383995_61415908
ENSMUST00000049271.13	chr12	+	996	8	FSM	ENSMUSG00000037466.14	ENSMUST00000049271.13	2441	8	35	1410	35	-1410	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGGGGTCCTGGGAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	113120075	113126754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_113120192_113120294_113120374_113120780_113120984_113121197_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672
ENSMUST00000049294.4	chr7	+	1420	3	FSM	ENSMUSG00000040824.4	ENSMUST00000049294.4	1420	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1740	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTCTCTCTTTTGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	18883646	18887467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_18883820_18885142_18885323_18886400
ENSMUST00000049343.15	chr7	-	3454	27	FSM	ENSMUSG00000038644.15	ENSMUST00000049343.15	3454	27	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGTTGTGGTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	44198271	44182169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
ENSMUST00000049369.16	chr19	-	1992	10	FSM	ENSMUSG00000042694.18	ENSMUST00000049369.16	1992	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCATTTCCTTATGACTT	NA	NA	NA	NA	NA	NA	NA	NA	47525558	47489471	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525252
ENSMUST00000049461.7	chr8	-	1902	15	FSM	ENSMUSG00000056228.11	ENSMUST00000049461.7	1902	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCTGGAAGATTAACTGT	NA	NA	NA	NA	NA	NA	NA	NA	11600783	11563976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580428_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
ENSMUST00000049461.7-0	chr8	-	1814	15	FSM	ENSMUSG00000056228.11	ENSMUST00000049461.7	1902	15	88	0	88	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCTGGAAGATTAACTGT	NA	NA	NA	NA	NA	NA	NA	NA	11600695	11563976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580428_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
ENSMUST00000049530.14	chr15	-	2092	3	FSM	ENSMUSG00000047878.14	ENSMUST00000049530.14	2092	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATGCCTCATGGTCACA	NA	NA	NA	NA	NA	NA	NA	NA	83135975	83110922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_83112796_83114714_83114859_83135900
ENSMUST00000049567.10	chr9	-	3172	6	FSM	ENSMUSG00000003308.16	ENSMUST00000049567.10	3172	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGGCTCTGAATTAACC	NA	NA	NA	NA	NA	NA	NA	NA	21150367	21141026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150088
ENSMUST00000049628.16	chr5	-	371	4	FSM	ENSMUSG00000050856.17	ENSMUST00000049628.16	371	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	470	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCTCTCTTTACTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	108582314	108581109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_108581204_108581596_108581696_108581891_108581947_108582191
ENSMUST00000049648.9	chr9	+	2231	3	FSM	ENSMUSG00000025893.9	ENSMUST00000049648.9	2231	3	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGAAGGGAAAATTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	4309832	4331732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_4309935_4316826_4317072_4329848
ENSMUST00000049699.9	chr8	+	3255	3	FSM	ENSMUSG00000048310.9	ENSMUST00000049699.9	3255	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGAAGGCTGCCATTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	106627072	106658410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_106627173_106639251_106640279_106656282
ENSMUST00000049813.6	chr1	+	3707	2	FSM	ENSMUSG00000046404.6	ENSMUST00000049813.6	6128	2	0	2421	0	-2421	multi-exon	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTAAAAGATTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	130645063	130649674	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_130645549_130646452
ENSMUST00000049822.10	chr3	+	1781	6	FSM	ENSMUSG00000028145.10	ENSMUST00000049822.10	1781	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTTCTTGTTTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	94217395	94239847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_94217596_94224696_94224884_94230888_94231049_94231583_94231692_94237068_94237194_94238846
ENSMUST00000049861.11	chr5	-	3335	5	FSM	ENSMUSG00000061898.11	ENSMUST00000049861.11	3335	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGTTTATGTGTTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	143166485	143157940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_143160814_143161790_143161887_143162219_143162347_143165240_143165298_143166303
ENSMUST00000049863.12	chr2	+	1081	7	FSM	ENSMUSG00000046020.14	ENSMUST00000049863.12	5600	7	45	4474	0	-730	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTGTCTCCTCGTTCACT	NA	NA	NA	NA	NA	NA	NA	NA	153083497	153107693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_153083646_153085557_153085680_153090368_153090552_153091600_153091714_153101519_153101713_153103117_153103361_153107614
ENSMUST00000049887.13	chr5	+	1701	7	FSM	ENSMUSG00000048439.16	ENSMUST00000049887.13	2914	7	37	1176	37	-1176	multi-exon	TRUE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCAAGGGACTCTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	24369997	24387835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_24370202_24372340_24372564_24374293_24374389_24380451_24380529_24382997_24383085_24386078_24386164_24386905
ENSMUST00000049911.16	chr17	-	1138	7	FSM	ENSMUSG00000015120.16	ENSMUST00000049911.16	1138	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGTTGCATTATCAT	NA	NA	NA	NA	NA	NA	NA	NA	25493284	25480889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493146
ENSMUST00000049966.6	chr6	+	921	5	FSM	ENSMUSG00000030058.18	ENSMUST00000049966.6	921	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGCCTCTTACCCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	87864909	87867741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171
ENSMUST00000049999.9	chrX	+	589	2	FSM	ENSMUSG00000046550.9	ENSMUST00000049999.9	1309	2	0	720	0	-574	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGTCGTTCTCTGGAGTC	NA	NA	NA	NA	NA	NA	NA	NA	152615288	152616519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_152615545_152616186
ENSMUST00000050073.13	chr3	-	2464	3	FSM	ENSMUSG00000028035.14	ENSMUST00000050073.13	2464	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTATTTAGAAATTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	151899482	151889591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_151891018_151892051_151892621_151899013
ENSMUST00000050073.13-0	chr3	-	1344	3	FSM	ENSMUSG00000028035.14	ENSMUST00000050073.13	2464	3	241	879	241	247	multi-exon	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGTGTGTGTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	151899241	151890470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_151891018_151892051_151892621_151899013
ENSMUST00000050077.15	chr6	+	1372	9	FSM	ENSMUSG00000062190.13	ENSMUST00000050077.15	2509	9	451	686	451	-686	multi-exon	TRUE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATTGATTAGTGCCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	57680071	57714781	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_57680249_57689972_57690091_57699481_57699690_57700473_57700622_57701530_57701678_57703401_57703585_57709180_57709358_57711001_57711075_57714640
ENSMUST00000050205.12	chr5	+	758	5	FSM	ENSMUSG00000036639.13	ENSMUST00000050205.12	954	5	0	196	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTTGTGGCACCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	140317663	140323696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_140317711_140318177_140318229_140320209_140320375_140321067_140321214_140323347
ENSMUST00000050273.9	chr16	+	444	3	FSM	ENSMUSG00000046516.11	ENSMUST00000050273.9	444	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTGTTGTGTTTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	38167352	38173125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_38167570_38169602_38169692_38172987
ENSMUST00000050306.8	chr1	-	967	1	FSM	ENSMUSG00000044854.8	ENSMUST00000050306.8	967	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGTTCAGATGTCCTTAA	NA	NA	NA	NA	NA	NA	NA	NA	183766195	183765228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_183765200_183766200
ENSMUST00000050312.3	chr2	-	2930	12	FSM	ENSMUSG00000027223.16	ENSMUST00000050312.3	2930	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATCAGAGTGGGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	92231608	92214024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_92214767_92215068_92215168_92215268_92215340_92215491_92215609_92215757_92215868_92216139_92216313_92216707_92216784_92216915_92217729_92217898_92217981_92219319_92219626_92221380_92221487_92231373
ENSMUST00000050323.6	chr2	+	1606	8	FSM	ENSMUSG00000002104.12	ENSMUST00000050323.6	1606	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAGTGATTCTGACCCTT	NA	NA	NA	NA	NA	NA	NA	NA	90865985	90876074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_90866334_90866891_90867231_90872198_90872358_90873304_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
ENSMUST00000050331.13	chrX	+	1701	4	FSM	ENSMUSG00000045427.14	ENSMUST00000050331.13	1701	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTGGTCAGCTTCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	133502019	133507133	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_133502083_133503448_133503512_133503666_133503712_133505603
ENSMUST00000050339.4	chr19	-	195	1	FSM	ENSMUSG00000051133.4	ENSMUST00000050339.4	195	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCCTGCCCCTGTGGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	5465787	5465592	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5465600_5465800
ENSMUST00000050373.7	chr8	+	1335	1	FSM	ENSMUSG00000047654.7	ENSMUST00000050373.7	1335	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGGTTAGCGGTGGAACC	NA	NA	NA	NA	NA	NA	NA	NA	70354833	70356168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_70354800_70356200
ENSMUST00000050410.11	chr2	-	775	5	FSM	ENSMUSG00000044627.12	ENSMUST00000050410.11	775	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	32178087	32168827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32177897
ENSMUST00000050467.9	chr15	-	2512	2	FSM	ENSMUSG00000048546.9	ENSMUST00000050467.9	4151	2	180	1459	180	-1459	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGCACTTTTGTTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	81742506	81733931	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_81736074_81742136
ENSMUST00000050476.11	chr18	+	1328	4	FSM	ENSMUSG00000033272.13	ENSMUST00000050476.11	2362	4	30	1004	0	-1004	multi-exon	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGGAGGGCTTCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	36812661	36815902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_36812677_36813568_36813668_36814580_36814819_36814926
ENSMUST00000050516.14	chr10	+	1450	11	FSM	ENSMUSG00000044475.15	ENSMUST00000050516.14	1450	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	59838660	59935808	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
ENSMUST00000050552.15	chr1	+	2389	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	0	1487	0	735	multi-exon	FALSE	canonical	NA	NA	NA	NA	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTAAACCATACGATTGT	NA	NA	NA	NA	NA	NA	NA	NA	58432056	58445025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
ENSMUST00000050552.15-1	chr1	+	2389	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	234	1253	234	969	multi-exon	FALSE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCTTCGTTGCTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	58432290	58445259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
ENSMUST00000050584.10	chr18	+	639	3	FSM	ENSMUSG00000046727.14	ENSMUST00000050584.10	831	3	66	126	-11	-126	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTAGTTATGAAATATATA	NA	NA	NA	NA	NA	NA	NA	NA	36481815	36535907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_36481870_36499567_36499795_36535549
ENSMUST00000050735.12	chr7	+	939	3	FSM	ENSMUSG00000049421.14	ENSMUST00000050735.12	4006	3	384	2683	-7	-2675	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCCAGAGAGGAAACTTCC	NA	NA	NA	NA	NA	NA	NA	NA	29794602	29804364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_29794637_29798952_29799148_29803654
ENSMUST00000050797.14	chr9	+	1631	7	FSM	ENSMUSG00000032035.17	ENSMUST00000050797.14	1976	7	335	10	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGCCAGTATTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	32607679	32666290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_32607762_32639970_32640091_32641350_32641552_32644244_32644323_32645235_32645485_32664094_32664214_32665508
ENSMUST00000050813.4	chr10	-	1567	3	FSM	ENSMUSG00000049038.4	ENSMUST00000050813.4	1567	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTATTCCAAAACATCAT	NA	NA	NA	NA	NA	NA	NA	NA	84963891	84955296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_84956679_84962231_84962351_84963825
ENSMUST00000050827.14	chr5	-	2344	12	FSM	ENSMUSG00000029422.16	ENSMUST00000050827.14	2344	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATTGTATGCTATTTGC	NA	NA	NA	NA	NA	NA	NA	NA	123887452	123866488	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
ENSMUST00000050833.14	chr7	-	1315	5	FSM	ENSMUSG00000030689.16	ENSMUST00000050833.14	1944	5	192	437	192	-432	multi-exon	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGCAGGGGGCAGCTCG	NA	NA	NA	NA	NA	NA	NA	NA	126460443	126451188	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411
ENSMUST00000050881.10	chr16	+	949	3	FSM	ENSMUSG00000022516.11	ENSMUST00000050881.10	1329	3	6	374	6	-374	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTCTCACCCATCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	4756991	4758506	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_4757158_4757241_4757578_4758059
ENSMUST00000050952.4	chr5	+	542	2	FSM	ENSMUSG00000047963.8	ENSMUST00000050952.4	1985	2	17	1426	17	334	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCCTGCTTGTGGACAG	NA	NA	NA	NA	NA	NA	NA	NA	92750926	92753012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_92751197_92752740
ENSMUST00000050970.4	chr5	+	1196	2	FSM	ENSMUSG00000029642.12	ENSMUST00000050970.4	1196	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGAGTGGTTTCTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	147013859	147015896	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_147014504_147015344
ENSMUST00000051053.5	chr11	+	1012	3	FSM	ENSMUSG00000044949.5	ENSMUST00000051053.5	1012	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTACAATTTCTAATTT	NA	NA	NA	NA	NA	NA	NA	NA	32405369	32466687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_32405547_32449224_32449462_32466089
ENSMUST00000051094.9	chr8	-	1792	6	FSM	ENSMUSG00000015341.18	ENSMUST00000051094.9	1792	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTCTTGTCTTAGTCTA	NA	NA	NA	NA	NA	NA	NA	NA	23747090	23731361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689_23746823_23747035
ENSMUST00000051153.6	chr2	-	650	4	FSM	ENSMUSG00000063364.11	ENSMUST00000051153.6	650	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGTGTTTTTCAGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	150204685	150152854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_150153139_150186228_150186290_150186499_150186627_150204507
ENSMUST00000051176.9	chr6	-	1606	3	FSM	ENSMUSG00000047420.9	ENSMUST00000051176.9	1606	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCCAGGTTCCTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	35303076	35289602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_35290805_35292227_35292329_35302773
ENSMUST00000051207.2	chr11	-	3059	2	FSM	ENSMUSG00000048807.3	ENSMUST00000051207.2	3059	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTCTGTCATTCCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	3864664	3857021	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3857985_3862568
ENSMUST00000051241.7	chr7	-	1145	2	FSM	ENSMUSG00000044786.7	ENSMUST00000051241.7	2790	2	998	647	0	-640	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAACCCATTTCCCTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	28078680	28076855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_28077919_28078598
ENSMUST00000051293.8	chr5	+	1235	2	FSM	ENSMUSG00000044197.9	ENSMUST00000051293.8	4157	2	0	2922	0	-329	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATAGCACTTTGTTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	139366335	139379248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_139366499_139378176
ENSMUST00000051341.6	chr15	+	1754	2	FSM	ENSMUSG00000045665.6	ENSMUST00000051341.6	1754	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCCTCTCCTGTACCCA	NA	NA	NA	NA	NA	NA	NA	NA	102187888	102190189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102188065_102188611
ENSMUST00000051341.6-0	chr15	+	1431	2	FSM	ENSMUSG00000045665.6	ENSMUST00000051341.6	1754	2	0	323	0	-323	multi-exon	FALSE	canonical	NA	NA	NA	NA	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCGTCATGGTGACGACT	NA	NA	NA	NA	NA	NA	NA	NA	102187888	102189866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102188065_102188611
ENSMUST00000051363.8	chr15	+	2968	1	FSM	ENSMUSG00000047347.8	ENSMUST00000051363.8	2968	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	380	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGCAAAAAAATAATTAATTG	NA	NA	NA	NA	NA	NA	NA	NA	82400511	82403479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_82400500_82403500
ENSMUST00000051364.4	chr7	-	763	2	FSM	ENSMUSG00000044709.7	ENSMUST00000051364.4	763	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGCTGCTGTGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	19307268	19298873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_19299602_19307233
ENSMUST00000051396.13	chr1	-	2925	15	FSM	ENSMUSG00000026600.13	ENSMUST00000051396.13	2925	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACATGTACTCATATGT	NA	NA	NA	NA	NA	NA	NA	NA	156294374	156257362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_156258686_156259773_156259920_156260416_156260553_156261722_156261822_156263362_156263461_156265273_156265404_156266857_156266904_156267270_156267353_156268076_156268156_156268798_156269082_156269950_156270059_156272124_156272185_156274110_156274263_156285515_156285575_156294250
ENSMUST00000051437.6	chr12	+	312	1	FSM	ENSMUSG00000049246.6	ENSMUST00000051437.6	312	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGCTGATGAAATGATGT	NA	NA	NA	NA	NA	NA	NA	NA	81446585	81446897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_81446600_81446900
ENSMUST00000051490.15	chr13	+	764	5	FSM	ENSMUSG00000050002.15	ENSMUST00000051490.15	764	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCGGGCTGTACTGTAAA	NA	NA	NA	NA	NA	NA	NA	NA	58305462	58311760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_58305551_58307690_58307722_58307965_58308053_58310651_58310696_58311246
ENSMUST00000051574.13	chr17	-	1996	13	FSM	ENSMUSG00000023942.16	ENSMUST00000051574.13	1996	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	45906498	45896128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
ENSMUST00000051676.7	chr4	+	1743	2	FSM	ENSMUSG00000046694.7	ENSMUST00000051676.7	2287	2	0	544	0	-544	multi-exon	TRUE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTAGCAACACCTTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	133207442	133214705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_133207875_133213394
ENSMUST00000051698.14	chr15	+	1407	4	FSM	ENSMUSG00000022587.15	ENSMUST00000051698.14	2281	4	71	803	-22	-229	multi-exon	FALSE	canonical	NA	NA	NA	NA	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACCTGAAAAGATTCTACA	NA	NA	NA	NA	NA	NA	NA	NA	74826990	74830951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_74827567_74829625_74829727_74830117_74830238_74830341
ENSMUST00000051698.14-1	chr15	+	1437	4	FSM	ENSMUSG00000022587.15	ENSMUST00000051698.14	2281	4	189	655	74	-81	multi-exon	FALSE	canonical	NA	NA	NA	NA	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAGTCCCATCCTGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	74827108	74831099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_74827567_74829625_74829727_74830117_74830238_74830341
ENSMUST00000051711.16	chr19	-	2867	19	FSM	ENSMUSG00000024969.16	ENSMUST00000051711.16	2867	19	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	7318953	7254123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532_7318663_7318824
ENSMUST00000051758.11	chr5	+	642	3	FSM	ENSMUSG00000066735.9	ENSMUST00000051758.11	3112	3	204	2266	47	-99	multi-exon	FALSE	canonical	NA	NA	NA	NA	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATCTTAAACTGATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	129971014	130011321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_129971207_130007359_130007470_130010981
ENSMUST00000051867.7	chr8	-	2107	4	FSM	ENSMUSG00000031683.17	ENSMUST00000051867.7	2107	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACAGTTGCCACCATCT	NA	NA	NA	NA	NA	NA	NA	NA	79547769	79533079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79547676
ENSMUST00000051870.8	chr8	+	548	2	FSM	ENSMUSG00000047710.9	ENSMUST00000051870.8	4013	2	63	3402	0	-3402	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAGCACAGAAAACGAGC	NA	NA	NA	NA	NA	NA	NA	NA	13919703	13928237	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_13919812_13927797
ENSMUST00000051912.13	chr7	+	2181	8	FSM	ENSMUSG00000030498.16	ENSMUST00000051912.13	2181	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACACATTATTTGTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	51528714	51644201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_51528990_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
ENSMUST00000051934.7	chr12	+	1259	3	FSM	ENSMUSG00000044715.8	ENSMUST00000051934.7	2720	3	17	1444	17	-1444	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGTATTTTGGCCTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	105651659	105667838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_105651718_105664976_105665236_105666896
ENSMUST00000051937.9	chr5	+	699	4	FSM	ENSMUSG00000049907.9	ENSMUST00000051937.9	1812	4	0	1113	0	-1113	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTATCTGTCAGTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	74355946	74359029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_74356252_74356763_74356821_74357927_74358005_74358769
ENSMUST00000051955.9	chr13	+	604	4	FSM	ENSMUSG00000049517.9	ENSMUST00000051955.9	937	4	0	333	0	-333	multi-exon	FALSE	canonical	NA	NA	NA	NA	1887	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAAGTAGCCAATGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	91071076	91072736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_91071319_91071705_91071866_91072444_91072566_91072655
ENSMUST00000052107.5	chr2	+	1355	2	FSM	ENSMUSG00000045822.5	ENSMUST00000052107.5	2708	2	0	1353	0	-1353	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATAGTCACCAGCAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	164647017	164662697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_164647352_164661676
ENSMUST00000052138.11	chr8	+	932	3	FSM	ENSMUSG00000033430.11	ENSMUST00000052138.11	3560	3	0	2628	0	-2628	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGAGGAAGACTCAGAAACAC	NA	NA	NA	NA	NA	NA	NA	NA	112738029	112744532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_112738775_112741968_112742094_112744470
ENSMUST00000052183.7	chr4	+	2345	4	FSM	ENSMUSG00000050213.7	ENSMUST00000052183.7	2345	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGAGGGTATTACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	124960464	124967835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_124960746_124961882_124961986_124964899_124965484_124966458
ENSMUST00000052249.7	chr13	+	1849	11	FSM	ENSMUSG00000041632.8	ENSMUST00000052249.7	1849	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	NA	NA	NA	NA	NA	NA	NA	99481293	99552070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
ENSMUST00000052281.6	chr11	-	2314	1	FSM	ENSMUSG00000043439.6	ENSMUST00000052281.6	2314	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTTTCGAGGTCCTTGC	NA	NA	NA	NA	NA	NA	NA	NA	97520528	97518214	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_97518200_97520500
ENSMUST00000052296.9	chr6	-	1603	4	FSM	ENSMUSG00000048776.9	ENSMUST00000052296.9	1603	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAATGTGAATTTTATTCT	NA	NA	NA	NA	NA	NA	NA	NA	147165665	147153598	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_147154076_147158440_147158858_147164767_147164894_147165082
ENSMUST00000052325.7	chr16	-	923	6	FSM	ENSMUSG00000005732.15	ENSMUST00000052325.7	923	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTTTGAAAACCTGGACC	NA	NA	NA	NA	NA	NA	NA	NA	18065931	18057665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18065890
ENSMUST00000052348.12	chr7	+	1525	11	FSM	ENSMUSG00000000154.17	ENSMUST00000052348.12	1525	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTTGGGCTTTGCCTAG	NA	NA	NA	NA	NA	NA	NA	NA	143027472	143053071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_143027575_143029806_143030043_143033021_143033120_143033456_143033618_143034126_143034260_143044548_143044662_143045482_143045591_143046578_143046680_143050687_143050790_143051046_143051168_143052821
ENSMUST00000052380.5	chr19	-	708	2	FSM	ENSMUSG00000050957.5	ENSMUST00000052380.5	708	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGCTTATATGTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	29302756	29298743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_29299140_29302444
ENSMUST00000052431.12	chrX	-	2024	4	FSM	ENSMUSG00000050394.15	ENSMUST00000052431.12	2024	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGGGGCACTGGCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	133652166	133649211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_133650975_133651299_133651380_133651689_133651783_133652078
ENSMUST00000052440.8	chr17	-	685	1	FSM	ENSMUSG00000043801.8	ENSMUST00000052440.8	685	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	521	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCAGCCCTGCCCAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	17566402	17565717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_17565700_17566400
ENSMUST00000052505.10	chr16	-	3391	2	FSM	ENSMUSG00000043140.11	ENSMUST00000052505.10	3391	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGGGTTTTTTGGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	8455576	8451092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_8454257_8455349
ENSMUST00000052509.6	chr7	+	1484	3	FSM	ENSMUSG00000054716.5	ENSMUST00000052509.6	1484	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	626	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACGATGCCTGTAAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	126843445	126853975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126843781_126844156_126844307_126852976
ENSMUST00000052528.5	chr12	+	599	1	FSM	ENSMUSG00000050974.5	ENSMUST00000052528.5	599	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTCTCTCTTTTTCGTT	NA	NA	NA	NA	NA	NA	NA	NA	14544561	14545160	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_14544600_14545200
ENSMUST00000052590.8	chr5	-	1123	2	FSM	ENSMUSG00000029616.10	ENSMUST00000052590.8	1123	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGGTTTTCTTTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	121590559	121582818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_121583636_121590253
ENSMUST00000052615.7	chr14	+	336	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	993	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGACAGCAAAAGGAAAAATA	NA	NA	NA	NA	NA	NA	NA	NA	13669437	13669773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_13669400_13669800
ENSMUST00000052645.13	chr3	-	1155	5	FSM	ENSMUSG00000050174.16	ENSMUST00000052645.13	1155	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGTTTTTCTCTACTGA	NA	NA	NA	NA	NA	NA	NA	NA	37473745	37459058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_37459644_37463656_37463712_37466508_37466565_37470849_37471054_37473490
ENSMUST00000052648.9	chr10	-	2255	5	FSM	ENSMUSG00000059554.13	ENSMUST00000052648.9	2255	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGGAAAGAGCCAACTCC	NA	NA	NA	NA	NA	NA	NA	NA	18110726	18092531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_18094141_18095235_18095391_18100644_18100809_18106166_18106367_18110599
ENSMUST00000052691.9	chr17	+	322	2	FSM	ENSMUSG00000050088.10	ENSMUST00000052691.9	2506	2	46	2138	0	-1188	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAGAGCCTGAGAGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	15163491	15164060	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_15163582_15163828
ENSMUST00000052715.10	chr4	-	2341	2	FSM	ENSMUSG00000045268.14	ENSMUST00000052715.10	2341	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTACTTATTTGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	119031053	119026709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_119028240_119030242
ENSMUST00000052727.5	chr6	+	923	3	FSM	ENSMUSG00000038451.14	ENSMUST00000052727.5	1219	3	13	283	13	-283	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGTCAAATATCCACTCT	NA	NA	NA	NA	NA	NA	NA	NA	124785881	124787299	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_124785994_124786189_124786933_124787231
ENSMUST00000052740.14	chr9	+	1833	11	FSM	ENSMUSG00000046603.17	ENSMUST00000052740.14	3049	11	57	1159	57	-1159	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGCTAGGCAAAAGATACT	NA	NA	NA	NA	NA	NA	NA	NA	122634660	122664240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_122634754_122637831_122637902_122640822_122640959_122643496_122643654_122647838_122648092_122653527_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
ENSMUST00000052798.14	chr10	+	806	8	FSM	ENSMUSG00000071072.13	ENSMUST00000052798.14	2000	8	57	1137	0	-287	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTTCACAATTGAGAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	127894879	127912004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
ENSMUST00000052832.6	chr17	-	755	4	FSM	ENSMUSG00000049760.7	ENSMUST00000052832.6	755	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGTAGCTTGGATAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	56916771	56914451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_56914842_56915637_56915693_56915845_56916024_56916639
ENSMUST00000052839.7	chrX	+	2456	5	FSM	ENSMUSG00000031217.9	ENSMUST00000052839.7	3258	5	0	802	0	-802	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCTAGCAGTGGGGTAG	NA	NA	NA	NA	NA	NA	NA	NA	98179735	98191795	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_98180620_98188897_98189176_98190083_98190177_98190357_98190484_98190720
ENSMUST00000052865.16	chr9	+	2907	5	FSM	ENSMUSG00000050912.16	ENSMUST00000052865.16	2907	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2434	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTAGTGTTTTGTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	7764041	7794334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_7764314_7768290_7768342_7790842_7791110_7791311_7791466_7792171
ENSMUST00000052867.9	chr16	-	402	1	FSM	ENSMUSG00000050299.9	ENSMUST00000052867.9	402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	282	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTATTGCCACCCTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	76200540	76200138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_76200100_76200500
ENSMUST00000052882.5	chr12	-	636	1	FSM	ENSMUSG00000043483.5	ENSMUST00000052882.5	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5435	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTATTTGACAGCGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	96889832	96889196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_96889200_96889800
ENSMUST00000052888.9	chr3	-	867	1	FSM	ENSMUSG00000069011.6	ENSMUST00000052888.9	867	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATGAAGTTGAAGACTTT	NA	NA	NA	NA	NA	NA	NA	NA	54718671	54717804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_54717800_54718700
ENSMUST00000052939.4	chr16	-	1291	2	FSM	ENSMUSG00000051146.4	ENSMUST00000052939.4	1291	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTGCTGCTTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	20440037	20437964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_20438994_20439775
ENSMUST00000053024.8	chr17	+	2627	2	FSM	ENSMUSG00000043445.8	ENSMUST00000053024.8	2627	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1666	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGCCTTCCTCTAATTT	NA	NA	NA	NA	NA	NA	NA	NA	24689365	24692084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_24690124_24690215
ENSMUST00000053035.7	chr8	+	3878	3	FSM	ENSMUSG00000046589.8	ENSMUST00000053035.7	3878	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCTTGTACAGTATGATT	NA	NA	NA	NA	NA	NA	NA	NA	4276826	4287470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_4277006_4281661_4281805_4283914
ENSMUST00000053068.7	chr19	+	1191	4	FSM	ENSMUSG00000048138.11	ENSMUST00000053068.7	2337	4	0	1146	0	-1146	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCCAACCGTATGGTGCC	NA	NA	NA	NA	NA	NA	NA	NA	25649774	25655209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_25650123_25650779_25651341_25652914_25653018_25655030
ENSMUST00000053116.7	chr5	-	1684	2	FSM	ENSMUSG00000051022.8	ENSMUST00000053116.7	1684	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATGTTGCTCCTCTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	39801977	39771281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_39772748_39801759
ENSMUST00000053150.8	chr9	-	374	1	FSM	ENSMUSG00000050621.8	ENSMUST00000053150.8	374	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6076	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTATCCCTTGGCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	114811807	114811433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_114811400_114811800
ENSMUST00000053251.12	chr8	-	2466	8	FSM	ENSMUSG00000031586.18	ENSMUST00000053251.12	2466	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTTGTCTGACAACTT	NA	NA	NA	NA	NA	NA	NA	NA	34419891	34272670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_34274215_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
ENSMUST00000053265.8	chr13	-	1682	3	FSM	ENSMUSG00000046573.8	ENSMUST00000053265.8	2086	3	89	315	89	-315	multi-exon	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTCCTTCCACACACAC	NA	NA	NA	NA	NA	NA	NA	NA	36301420	36162692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_36163891_36276788_36276910_36301057
ENSMUST00000053288.6	chr11	+	1614	5	FSM	ENSMUSG00000050910.6	ENSMUST00000053288.6	3700	5	0	2086	0	-2086	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGCGAAGAGAGCCCGGGA	NA	NA	NA	NA	NA	NA	NA	NA	115272741	115284872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_115273228_115281336_115281450_115281688_115281838_115283484_115283650_115284171
ENSMUST00000053413.12	chr11	+	4162	1	FSM	ENSMUSG00000048895.14	ENSMUST00000053413.12	4162	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTGTTTGTGGCCCCGC	NA	NA	NA	NA	NA	NA	NA	NA	80367848	80372010	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_80367800_80372000
ENSMUST00000053521.15	chr7	-	3150	5	FSM	ENSMUSG00000062040.15	ENSMUST00000053521.15	3150	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATCTTCTCTTCTGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	29605529	29593140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603485_29605478
ENSMUST00000053540.11	chrX	+	510	3	FSM	ENSMUSG00000046432.13	ENSMUST00000053540.11	930	3	44	376	0	-318	multi-exon	FALSE	canonical	NA	NA	NA	NA	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTTATGGGGGAGCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	135171053	135172351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_135171151_135171558_135171632_135172011
ENSMUST00000053558.10	chr8	-	927	5	FSM	ENSMUSG00000050914.17	ENSMUST00000053558.10	927	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTGCATTCTTTACTA	NA	NA	NA	NA	NA	NA	NA	NA	46452904	46449938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452653
ENSMUST00000053583.7	chr9	+	824	2	FSM	ENSMUSG00000051238.7	ENSMUST00000053583.7	1838	2	0	1014	0	-1014	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGCAGATTCAAAGACCTGA	NA	NA	NA	NA	NA	NA	NA	NA	21867050	21868546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_21867301_21867972
ENSMUST00000053593.8	chrX	-	3545	3	FSM	ENSMUSG00000050029.8	ENSMUST00000053593.8	3545	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAACCAGTTATCATTTG	NA	NA	NA	NA	NA	NA	NA	NA	50106895	50092788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_50095628_50103847_50104161_50106502
ENSMUST00000053594.7	chr10	-	1661	3	FSM	ENSMUSG00000045867.11	ENSMUST00000053594.7	1661	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAGTGCGTGTCCATT	NA	NA	NA	NA	NA	NA	NA	NA	95159970	95010607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_95011841_95158447_95158752_95159846
ENSMUST00000053664.9	chr2	-	1977	8	FSM	ENSMUSG00000050043.17	ENSMUST00000053664.9	1977	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	503	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCCTTGCTGTTTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	84508400	84501660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508194
ENSMUST00000053705.8	chr19	+	1145	2	FSM	ENSMUSG00000047379.8	ENSMUST00000053705.8	2032	2	81	806	0	-805	multi-exon	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGTTTAATTTTGAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	5088934	5090353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5090061_5090334
ENSMUST00000053729.14	chr2	+	1642	11	FSM	ENSMUSG00000026784.15	ENSMUST00000053729.14	1642	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	22785533	22830278	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
ENSMUST00000053744.9	chr12	+	2344	1	FSM	ENSMUSG00000046791.9	ENSMUST00000053744.9	2344	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	308	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCTTTTCTAAGCCTAG	NA	NA	NA	NA	NA	NA	NA	NA	83997381	83999725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_83997400_83999700
ENSMUST00000053819.6	chr4	+	716	6	FSM	ENSMUSG00000028911.17	ENSMUST00000053819.6	2257	6	199	1342	199	-1342	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGTCGCAGCCGCAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	131601126	131627675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_131601182_131618517_131618661_131619391_131619505_131624967_131625183_131627372_131627463_131627575
ENSMUST00000053855.8	chr3	+	847	3	FSM	ENSMUSG00000046818.8	ENSMUST00000053855.8	2722	3	0	1875	0	-1875	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAAAACAATTAAAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	137329432	137332219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_137329645_137329892_137330035_137331726
ENSMUST00000053865.7	chr10	+	1240	1	FSM	ENSMUSG00000046687.7	ENSMUST00000053865.7	1240	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGACAAAGAGGAGCGGG	NA	NA	NA	NA	NA	NA	NA	NA	61906901	61908141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_61906900_61908100
ENSMUST00000053918.9	chr15	-	1339	6	FSM	ENSMUSG00000022571.10	ENSMUST00000053918.9	1339	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	546	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTGGACTTTAGTAGAG	NA	NA	NA	NA	NA	NA	NA	NA	75793409	75788325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_75788929_75789085_75789179_75790100_75790314_75790521_75790702_75791077_75791143_75793224
ENSMUST00000053981.6	chrX	+	1094	3	FSM	ENSMUSG00000045237.6	ENSMUST00000053981.6	1094	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	636	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAGTGTCTAGCTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	69429482	69433023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_69429758_69431499_69431773_69432477
ENSMUST00000054002.4	chr11	-	560	2	FSM	ENSMUSG00000053113.4	ENSMUST00000054002.4	2552	2	106	1886	106	-1886	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAAGAACCTACGCATCC	NA	NA	NA	NA	NA	NA	NA	NA	117859906	117858790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_117859145_117859700
ENSMUST00000054052.15	chr8	+	3390	10	FSM	ENSMUSG00000049577.16	ENSMUST00000054052.15	3390	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGCTGGAGGCCCAGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	123008879	123063990	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_123009262_123032096_123032220_123034230_123034381_123050438_123050573_123058828_123058929_123060459_123060667_123061190_123061422_123061670_123061767_123061851_123061999_123062170
ENSMUST00000054220.10	chr8	-	1260	5	FSM	ENSMUSG00000045128.10	ENSMUST00000054220.10	1260	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17616	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGGCATCTGGTCTATA	NA	NA	NA	NA	NA	NA	NA	NA	71350056	71347365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71350002
ENSMUST00000054274.8	chr13	+	1123	4	FSM	ENSMUSG00000045312.13	ENSMUST00000054274.8	4348	4	36	3189	36	-2297	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGCCTTCCTGGGACCAGT	NA	NA	NA	NA	NA	NA	NA	NA	94194339	94328728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_94194415_94257284_94257344_94310530_94311147_94328355
ENSMUST00000054289.13	chr17	+	1094	5	FSM	ENSMUSG00000044533.16	ENSMUST00000054289.13	1094	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTTTTTTTGTCTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	24939083	24940903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
ENSMUST00000054310.4	chr7	+	749	2	FSM	ENSMUSG00000044881.8	ENSMUST00000054310.4	1391	2	0	642	0	-52	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTGACCTTCCCGTTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	100186306	100188934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_100186400_100188278
ENSMUST00000054356.16	chr3	+	2778	17	FSM	ENSMUSG00000045934.16	ENSMUST00000054356.16	2778	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTGGTATTTTCTTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	96069320	96079034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_96069576_96069945_96070037_96070408_96070531_96070784_96070846_96070984_96071128_96071564_96071644_96071749_96071886_96072102_96072191_96072313_96072403_96072487_96072613_96075127_96075195_96075388_96075460_96075914_96076082_96076351_96076526_96077122_96077306_96077668_96077963_96078401
ENSMUST00000054415.12	chr7	-	1830	3	FSM	ENSMUSG00000049728.15	ENSMUST00000054415.12	5768	3	0	3938	0	-992	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGACTTTTGTGGCTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	127476000	127466156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_127466536_127466927_127467597_127475218
ENSMUST00000054442.11	chr16	+	1884	6	FSM	ENSMUSG00000044442.12	ENSMUST00000054442.11	1884	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCAGCCTTTGTGTAGC	NA	NA	NA	NA	NA	NA	NA	NA	87151072	87165630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87163026_87163169_87164352
ENSMUST00000054445.9	chr6	+	479	2	FSM	ENSMUSG00000043421.9	ENSMUST00000054445.9	982	2	0	503	0	-243	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTTCCATTTCTCGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	29272624	29274942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_29272810_29274648
ENSMUST00000054483.14	chr3	+	822	3	FSM	ENSMUSG00000046688.15	ENSMUST00000054483.14	2245	3	107	1316	0	-881	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATTCTTCATACTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	127583560	127590722	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_127583821_127585121_127585179_127590217
ENSMUST00000054544.7	chr12	-	526	2	FSM	ENSMUSG00000049751.7	ENSMUST00000054544.7	526	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCAAGCCTTGTGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	69230857	69229514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_69229940_69230756
ENSMUST00000054544.7-0	chr12	-	456	2	FSM	ENSMUSG00000049751.7	ENSMUST00000054544.7	526	2	70	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCAAGCCTTGTGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	69230787	69229514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_69229940_69230756
ENSMUST00000054665.10	chr1	-	1964	9	FSM	ENSMUSG00000067653.13	ENSMUST00000054665.10	1964	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGAAGGCCTCTTGAAC	NA	NA	NA	NA	NA	NA	NA	NA	36574820	36569614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_36570723_36570803_36570903_36570989_36571089_36571192_36571292_36571382_36571482_36571661_36571788_36573067_36573197_36573371_36573519_36574762
ENSMUST00000054697.7	chrX	+	2727	7	FSM	ENSMUSG00000047694.13	ENSMUST00000054697.7	5211	7	0	2484	0	1402	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTATCCTCTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	97981366	97990139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_97981895_97983378_97983508_97983727_97983807_97984392_97984436_97986383_97986513_97987083_97987242_97988478
ENSMUST00000054723.9	chr4	+	1235	11	ISM	ENSMUSG00000028318.15	ENSMUST00000133157.8	2986	12	652	1580	572	-253	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTCTGTTCACTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	45019234	45032112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_45019378_45022207_45022285_45023192_45023279_45025769_45025829_45026763_45026909_45027363_45027472_45028002_45028100_45029337_45029472_45030752_45030835_45031366_45031499_45031940
ENSMUST00000054780.10	chr17	+	287	4	FSM	ENSMUSG00000003198.11	ENSMUST00000054780.10	2028	4	0	1741	0	-1741	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTGTACCAATCTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	56199119	56204187	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_56199187_56202820_56202948_56203140_56203202_56204155
ENSMUST00000054835.15	chr13	+	2111	12	FSM	ENSMUSG00000021694.19	ENSMUST00000054835.15	2111	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	108295271	108331519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
ENSMUST00000054857.13	chr4	+	1478	3	FSM	ENSMUSG00000049119.15	ENSMUST00000054857.13	3210	3	4	1728	4	-573	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGAGTAGATGCAGATGTG	NA	NA	NA	NA	NA	NA	NA	NA	5644124	5799373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_5644411_5729570_5729658_5798268
ENSMUST00000054912.15	chr2	+	483	4	NNC	ENSMUSG00000047459.15	novel	684	4	NA	NA	0	-55	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGGGTCGCTCTGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	155078454	155092000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_+_155078538_155084654_155084727_155089690_155089859_155091840
ENSMUST00000054956.15	chr19	+	2024	11	FSM	ENSMUSG00000024776.19	ENSMUST00000054956.15	2024	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCGGTTGTCACATTTTA	NA	NA	NA	NA	NA	NA	NA	NA	34169628	34217733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_34170032_34197586_34197667_34203941_34204160_34207492_34207569_34208830_34208927_34211360_34211719_34212609_34212735_34213675_34213814_34216175_34216289_34216902_34217003_34217416
ENSMUST00000055006.12	chr11	+	3906	6	FSM	ENSMUSG00000047821.17	ENSMUST00000055006.12	3906	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	462	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTTTGCTAGTATTTG	NA	NA	NA	NA	NA	NA	NA	NA	62711056	62733762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_62711826_62719928_62720025_62724804_62725039_62727504_62727671_62728060_62728157_62731217
ENSMUST00000055018.11	chr4	-	3512	4	FSM	ENSMUSG00000038668.15	ENSMUST00000055018.11	3512	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATGTGTGGTTCTGGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	58553357	58435254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_58437635_58486476_58487225_58504621_58504782_58553133
ENSMUST00000055104.6	chrX	+	2803	2	FSM	ENSMUSG00000049536.6	ENSMUST00000055104.6	2803	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTACTATAACAAGTATGC	NA	NA	NA	NA	NA	NA	NA	NA	135608730	135612227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_135608838_135609531
ENSMUST00000055117.9	chr17	-	2627	9	FSM	ENSMUSG00000044857.9	ENSMUST00000055117.9	2627	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTTTATTTGTGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	27423443	27408573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_27409765_27411905_27412009_27412076_27412179_27412811_27412958_27414298_27414379_27415109_27415187_27418336_27418413_27420610_27420652_27422632
ENSMUST00000055190.8	chr5	-	3247	14	FSM	ENSMUSG00000038859.8	ENSMUST00000055190.8	3247	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGCTGTAAGTGGTACC	NA	NA	NA	NA	NA	NA	NA	NA	144294922	144201335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_144202843_144203417_144203456_144212582_144212776_144214454_144214527_144215337_144215549_144217629_144217778_144218799_144218968_144221253_144221407_144222267_144222406_144222884_144222957_144223059_144223122_144255738_144255826_144261366_144261443_144294600
ENSMUST00000055244.13	chr2	+	1727	18	FSM	ENSMUSG00000026843.16	ENSMUST00000055244.13	3648	18	10	1911	10	-1911	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGGCCCACAGCCAGGTC	NA	NA	NA	NA	NA	NA	NA	NA	31462838	31505620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509
ENSMUST00000055261.11	chr6	+	1607	6	FSM	ENSMUSG00000043131.15	ENSMUST00000055261.11	4412	6	64	2741	0	-2740	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTCAGATTAATTTCATA	NA	NA	NA	NA	NA	NA	NA	NA	83303061	83318017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_83303250_83306848_83307016_83309435_83309530_83311057_83311192_83315262_83315427_83317157
ENSMUST00000055349.15	chr17	+	842	4	FSM	ENSMUSG00000053347.16	ENSMUST00000055349.15	2741	4	34	1865	27	457	multi-exon	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCGTAAAGGAGATCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	22181566	22211482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_22181801_22207011_22207083_22209759_22209887_22211072
ENSMUST00000055390.6	chr12	+	701	5	FSM	ENSMUSG00000046768.14	ENSMUST00000055390.6	2350	5	351	1298	351	-1298	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGTTTTTGATGAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	75355446	75446932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_75355776_75422121_75422181_75438452_75438618_75440742_75440839_75446880
ENSMUST00000055424.13	chr11	-	606	5	FSM	ENSMUSG00000025144.18	ENSMUST00000055424.13	606	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	120604564	120601767	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120604518
ENSMUST00000055436.5	chr4	-	1804	1	FSM	ENSMUSG00000043155.5	ENSMUST00000055436.5	1804	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGAGCCTCTGTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	116678904	116677100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_116677100_116678900
ENSMUST00000055447.14	chr18	-	2597	15	FSM	ENSMUSG00000049411.16	ENSMUST00000055447.14	2597	15	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTGTATGTTTATAAGC	NA	NA	NA	NA	NA	NA	NA	NA	12254571	12114994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_12116700_12126620_12126686_12176270_12176365_12180621_12180692_12191982_12192018_12197260_12197297_12200116_12200163_12201354_12201404_12203136_12203189_12207674_12207701_12217048_12217127_12237155_12237238_12246451_12246530_12251460_12251508_12254437
ENSMUST00000055454.14	chr17	-	1294	4	FSM	ENSMUSG00000038500.16	ENSMUST00000055454.14	2727	4	369	1064	-59	-101	multi-exon	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACCTTCAAGCACTGAC	NA	NA	NA	NA	NA	NA	NA	NA	36290759	36284496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_36284696_36285414_36285706_36289272_36289336_36290018
ENSMUST00000055559.8	chr6	+	1558	3	FSM	ENSMUSG00000050786.9	ENSMUST00000055559.8	2351	3	33	760	0	-756	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGAACCAGGGAGGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	49296240	49317756	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_49296415_49310844_49311232_49316759
ENSMUST00000055575.8	chr4	+	943	2	FSM	ENSMUSG00000050188.9	ENSMUST00000055575.8	943	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	389	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGTGCCTGATGCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	125990415	125992377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_125990603_125991621
ENSMUST00000055792.8	chr19	+	915	2	FSM	ENSMUSG00000047044.8	ENSMUST00000055792.8	1631	2	0	716	0	-716	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTGGTACACGGAATGAA	NA	NA	NA	NA	NA	NA	NA	NA	18690599	18695076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_18691024_18694585
ENSMUST00000055844.10	chr9	+	1146	8	FSM	ENSMUSG00000032387.16	ENSMUST00000055844.10	1987	8	0	841	0	-841	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGTATCTGTAGCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	65537840	65566967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
ENSMUST00000055858.14	chr7	+	1262	6	FSM	ENSMUSG00000045411.17	ENSMUST00000055858.14	1982	6	32	688	19	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCGCCCAAGTGGACATT	NA	NA	NA	NA	NA	NA	NA	NA	43896177	43901055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_43896248_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUST00000055872.3	chr11	+	726	2	FSM	ENSMUSG00000020793.6	ENSMUST00000055872.3	1940	2	547	667	547	-667	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTCTGCCTCTGTTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	116172311	116174097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_116172677_116173736
ENSMUST00000055922.4	chr4	+	2330	2	FSM	ENSMUSG00000048706.4	ENSMUST00000055922.4	3066	2	0	736	0	-736	multi-exon	FALSE	canonical	NA	NA	NA	NA	568	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAATTGTCTTTCCTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	80828882	80873129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_80829883_80871799
ENSMUST00000055931.5	chr11	+	816	2	FSM	ENSMUSG00000047205.13	ENSMUST00000055931.5	4632	2	0	3816	0	-1873	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTCTTTGGCAAGAATACA	NA	NA	NA	NA	NA	NA	NA	NA	3845239	3847480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_3845518_3846942
ENSMUST00000056078.9	chr7	-	722	3	FSM	ENSMUSG00000045948.9	ENSMUST00000056078.9	722	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGTGTGCGGTGTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	28441245	28439066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_28439665_28440911_28440980_28441189
ENSMUST00000056089.8	chr1	-	1311	2	FSM	ENSMUSG00000050777.8	ENSMUST00000056089.8	1311	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	737	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTCCTATGACTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	120001804	119995106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_119996055_120001441
ENSMUST00000056149.15	chr2	-	1999	13	FSM	ENSMUSG00000032046.16	ENSMUST00000056149.15	1999	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGAATCAGAGTTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	150746661	150674412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_150675061_150676198_150676327_150677192_150677272_150679271_150679355_150680234_150680315_150680660_150680699_150681639_150681770_150684165_150684212_150685310_150685342_150688163_150688284_150690271_150690378_150700279_150700405_150746276
ENSMUST00000056181.7	chr2	+	839	3	FSM	ENSMUSG00000050373.14	ENSMUST00000056181.7	2590	3	26	1725	0	-402	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCCCATCTGGCCCAGAC	NA	NA	NA	NA	NA	NA	NA	NA	164627936	164634005	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_164628245_164628617_164628776_164633632
ENSMUST00000056232.7	chr7	+	893	2	FSM	ENSMUSG00000045598.11	ENSMUST00000056232.7	3043	2	39	2111	39	-2111	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCAGTGGTTCCCCGACGG	NA	NA	NA	NA	NA	NA	NA	NA	126832465	126835104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126832690_126834435
ENSMUST00000056288.7	chr7	+	1932	2	FSM	ENSMUSG00000045165.7	ENSMUST00000056288.7	1932	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTTTGTATGACCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	126690530	126693158	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126690645_126691340
ENSMUST00000056370.13	chr3	-	1007	5	FSM	ENSMUSG00000028066.16	ENSMUST00000056370.13	1007	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	88317638	88301449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_88301878_88303211_88303408_88306441_88306543_88307017_88307124_88317462
ENSMUST00000056391.15	chr19	+	2975	9	FSM	ENSMUSG00000024947.18	ENSMUST00000056391.15	2975	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGATGTATGTATGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	6385068	6390919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
ENSMUST00000056396.7	chr19	+	633	1	FSM	ENSMUSG00000051255.7	ENSMUST00000056396.7	633	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAAGTTCGTGCTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	23653211	23653844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_23653200_23653800
ENSMUST00000056398.11	chr6	+	807	4	FSM	ENSMUSG00000044155.12	ENSMUST00000056398.11	807	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTTCTTTTCTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	18848577	18854052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_18848763_18849624_18849666_18851634_18851763_18853599
ENSMUST00000056398.11-0	chr6	+	668	4	FSM	ENSMUSG00000044155.12	ENSMUST00000056398.11	807	4	62	77	-27	-77	multi-exon	FALSE	canonical	NA	NA	NA	NA	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCTGTAAAGAGAACTTAGA	NA	NA	NA	NA	NA	NA	NA	NA	18848639	18853975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_18848763_18849624_18849666_18851634_18851763_18853599
ENSMUST00000056403.7	chr6	-	1217	1	FSM	ENSMUSG00000044927.7	ENSMUST00000056403.7	1217	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTCGTTGTCTTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	87958619	87957402	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_87957400_87958600
ENSMUST00000056458.14	chr4	-	757	10	FSM	ENSMUSG00000060288.14	ENSMUST00000056458.14	757	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTGTAGTTACTATT	NA	NA	NA	NA	NA	NA	NA	NA	119177681	119157206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_119157400_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ENSMUST00000056549.9	chr7	+	2194	4	FSM	ENSMUSG00000047603.10	ENSMUST00000056549.9	3373	4	0	1179	0	-1179	multi-exon	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCACCAGAGGGTCCACAC	NA	NA	NA	NA	NA	NA	NA	NA	23833666	23841487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_23833913_23834682_23834741_23836470_23836598_23839724
ENSMUST00000056578.7	chr5	+	473	3	FSM	ENSMUSG00000047843.17	ENSMUST00000056578.7	955	3	0	482	0	-303	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCACTGAGGAAGCGAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	144192043	144200902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_144192330_144192619_144192723_144200818
ENSMUST00000056677.8	chr11	+	1591	1	FSM	ENSMUSG00000046010.8	ENSMUST00000056677.8	1591	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	367	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATGGGTATTCTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	82655170	82656761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_82655200_82656800
ENSMUST00000056710.10	chr3	+	1358	7	FSM	ENSMUSG00000015750.16	ENSMUST00000056710.10	1601	7	0	243	0	-243	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCGTCAGCACCCCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	95801366	95804514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_95801596_95802132_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548_95803673_95804005
ENSMUST00000056907.7	chr11	+	3438	2	FSM	ENSMUSG00000049323.9	ENSMUST00000056907.7	7391	2	0	3953	0	3267	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTATAGTTGCAACATAG	NA	NA	NA	NA	NA	NA	NA	NA	60668350	60675160	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_60671208_60674579
ENSMUST00000056931.14	chr19	-	2295	11	FSM	ENSMUSG00000025223.16	ENSMUST00000056931.14	2295	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCACTCATGTTCCCCTAT	NA	NA	NA	NA	NA	NA	NA	NA	46028060	46021032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_46021781_46022470_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46027493
ENSMUST00000056962.11	chr16	+	1273	8	FSM	ENSMUSG00000041617.11	ENSMUST00000056962.11	1273	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTAAGCTTCCTTCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	17464338	17468602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_17464648_17465471_17465517_17465930_17465991_17466658_17466825_17467593_17467778_17467858_17467939_17468012_17468070_17468230
ENSMUST00000056962.11-0	chr16	+	1047	8	FSM	ENSMUSG00000041617.11	ENSMUST00000056962.11	1273	8	225	1	225	-1	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTAAGCTTCCTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	17464563	17468601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_17464648_17465471_17465517_17465930_17465991_17466658_17466825_17467593_17467778_17467858_17467939_17468012_17468070_17468230
ENSMUST00000056965.12	chr4	-	1163	6	FSM	ENSMUSG00000055401.15	ENSMUST00000056965.12	1163	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGTTTGAGGGCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	148236516	148230244	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236398
ENSMUST00000056972.6	chr8	+	3545	2	FSM	ENSMUSG00000046441.6	ENSMUST00000056972.6	3545	2	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTTGTGTTTGTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	110944620	110951118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_110944719_110947671
ENSMUST00000056977.14	chr4	+	2393	6	FSM	ENSMUSG00000070691.11	ENSMUST00000056977.14	3884	6	0	1491	0	318	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGCAGGTCCCTAAAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	134847962	134903810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_134848475_134880098_134880368_134882592_134882750_134890541_134890647_134898419_134898570_134902610
ENSMUST00000057023.12	chr7	+	2361	13	FSM	ENSMUSG00000051048.18	ENSMUST00000057023.12	2361	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTTCTAACAGCGACTAT	NA	NA	NA	NA	NA	NA	NA	NA	99934726	99968906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_99934934_99941782_99941926_99942953_99943178_99947104_99947255_99949843_99949896_99954706_99954871_99955073_99955251_99959993_99960059_99962412_99962573_99963814_99963878_99966248_99966318_99967188_99967286_99968116
ENSMUST00000057043.10	chr4	-	2911	5	FSM	ENSMUSG00000028619.16	ENSMUST00000057043.10	6431	5	0	3520	0	1858	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGAAGCACTTACTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	107035744	106994871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_106996997_107004711_107004906_107022744_107022887_107034761_107034902_107035434
ENSMUST00000057074.10	chr17	+	747	1	FSM	ENSMUSG00000043346.10	ENSMUST00000057074.10	747	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAGAAGAGCGCAGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	91544238	91544985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_91544200_91545000
ENSMUST00000057089.13	chr11	+	1310	4	FSM	ENSMUSG00000020453.18	ENSMUST00000057089.13	3118	4	1020	788	1002	-788	multi-exon	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGCACTACATCGGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	3241458	3258295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3257647
ENSMUST00000057110.11	chr18	-	2379	1	FSM	ENSMUSG00000043424.11	ENSMUST00000057110.11	2379	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGGTACAGGCGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	43610861	43608482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_43608500_43610900
ENSMUST00000057115.7	chr13	-	898	4	FSM	ENSMUSG00000044792.8	ENSMUST00000057115.7	1942	4	57	987	57	-987	multi-exon	FALSE	canonical	NA	NA	NA	NA	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGATCTCAGGCAGGACAAC	NA	NA	NA	NA	NA	NA	NA	NA	59917567	59904209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_59904818_59906703_59906810_59910555_59910610_59917437
ENSMUST00000057151.10	chr12	+	2971	5	FSM	ENSMUSG00000043061.11	ENSMUST00000057151.10	2971	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATACAGTGTGCTTTCGT	NA	NA	NA	NA	NA	NA	NA	NA	30634424	30641214	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650
ENSMUST00000057177.7	chr15	+	601	4	FSM	ENSMUSG00000045996.13	ENSMUST00000057177.7	601	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTCTATTCAATGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	36174178	36177156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_36174360_36175132_36175203_36175529_36175623_36176899
ENSMUST00000057195.17	chr7	+	847	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	0	1875	0	-1204	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCAAGTGGCAGCACCTC	NA	NA	NA	NA	NA	NA	NA	NA	44465511	44478361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_44465908_44477910
ENSMUST00000057208.13	chr1	+	1135	11	FSM	ENSMUSG00000060679.15	ENSMUST00000057208.13	1418	11	43	240	43	-240	multi-exon	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCCAGGCCAGGAGGG	NA	NA	NA	NA	NA	NA	NA	NA	42890435	42944602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938600_42938710_42942454_42942625_42944564
ENSMUST00000057243.6	chr19	+	5034	2	FSM	ENSMUSG00000048572.6	ENSMUST00000057243.6	5034	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGATGTCATAGCCTAC	NA	NA	NA	NA	NA	NA	NA	NA	24651371	24659597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_24651708_24654899
ENSMUST00000057251.8	chr6	-	1052	1	FSM	ENSMUSG00000090631.4	ENSMUST00000057251.8	1052	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACTAAAGTTACTTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	42464148	42463096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_42463100_42464100
ENSMUST00000057257.10	chr12	+	1292	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	248	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATCCCGAAAAGTATT	NA	NA	NA	NA	NA	NA	NA	NA	72132630	72147635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUST00000057265.8	chr9	+	406	4	FSM	ENSMUSG00000050641.8	ENSMUST00000057265.8	690	4	12	272	-11	-268	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCACAGGACTCGCTAGGC	NA	NA	NA	NA	NA	NA	NA	NA	108313692	108323013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_108313779_108315622_108315737_108322398_108322456_108322864
ENSMUST00000057416.8	chr12	+	3367	2	FSM	ENSMUSG00000046675.8	ENSMUST00000057416.8	3367	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCGTGCCATTGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	102710020	102713820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_102710426_102710858
ENSMUST00000057438.7	chr1	-	3020	3	FSM	ENSMUSG00000045210.9	ENSMUST00000057438.7	9749	3	420	6309	420	-6309	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTGCTTCTAGTAATAGT	NA	NA	NA	NA	NA	NA	NA	NA	9818187	9795155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_9795576_9807190_9807278_9815674
ENSMUST00000057454.4	chr2	+	645	3	FSM	ENSMUSG00000046814.4	ENSMUST00000057454.4	645	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	717	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTTGTGCAGTGACTC	NA	NA	NA	NA	NA	NA	NA	NA	118998253	119002871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_118998355_119000156_119000252_119002422
ENSMUST00000057576.8	chr7	-	2902	17	FSM	ENSMUSG00000034951.11	ENSMUST00000057576.8	2902	17	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGGTGTTTCCTTCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	121580934	121522061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_121522692_121524646_121524791_121528409_121528525_121529752_121529837_121534880_121535022_121536176_121536364_121540392_121540459_121543000_121543118_121548967_121549123_121550385_121550514_121555152_121555352_121562360_121562484_121563423_121563507_121570502_121570672_121576489_121576607_121576838_121576988_121580639
ENSMUST00000057598.7	chr13	+	1516	2	FSM	ENSMUSG00000051098.7	ENSMUST00000057598.7	3957	2	189	2252	189	-2252	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGTTGTTTGTTAT	NA	NA	NA	NA	NA	NA	NA	NA	81859648	81899142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_81860102_81898079
ENSMUST00000057649.8	chr10	+	563	1	FSM	ENSMUSG00000045886.8	ENSMUST00000057649.8	563	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	635	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGGTGGTCATGGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	43400079	43400642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_43400100_43400600
ENSMUST00000057669.16	chr7	+	1330	9	FSM	ENSMUSG00000063065.14	ENSMUST00000057669.16	1800	9	50	420	0	-420	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCCATCTCCCCATAGCC	NA	NA	NA	NA	NA	NA	NA	NA	126358822	126364571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126358991_126359902_126360086_126362206_126362397_126362569_126362687_126362912_126363028_126363405_126363538_126363705_126363816_126363894_126364050_126364411
ENSMUST00000057676.7	chr11	+	439	3	FSM	ENSMUSG00000050628.7	ENSMUST00000057676.7	1482	3	0	1043	0	-1043	multi-exon	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGATGCATTGGCCATGT	NA	NA	NA	NA	NA	NA	NA	NA	116324919	116328860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_116325255_116325384_116325448_116328819
ENSMUST00000057692.11	chr6	+	2122	10	FSM	ENSMUSG00000029823.17	ENSMUST00000057692.11	2702	10	49	531	49	-305	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGCCTTGATTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	38528448	38585874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_38528844_38547444_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38575719_38575750_38580211_38580404_38585087
ENSMUST00000057740.7	chr3	-	885	1	FSM	ENSMUSG00000047676.7	ENSMUST00000057740.7	885	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGCTGTGCAGGTGCC	NA	NA	NA	NA	NA	NA	NA	NA	149779179	149778294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_149778300_149779200
ENSMUST00000057781.8	chr9	+	3041	3	FSM	ENSMUSG00000044938.9	ENSMUST00000057781.8	6494	3	0	3453	0	-3453	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGATGGGCCTGGTACA	NA	NA	NA	NA	NA	NA	NA	NA	77543781	77563956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_77544070_77557252_77558458_77562408
ENSMUST00000057795.12	chr5	-	2270	11	FSM	ENSMUSG00000029422.16	ENSMUST00000057795.12	2270	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTCCATTGTATGCTAT	NA	NA	NA	NA	NA	NA	NA	NA	123887475	123866492	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123887351
ENSMUST00000057798.9	chr10	+	2106	11	FSM	ENSMUSG00000004931.12	ENSMUST00000057798.9	2106	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCTTGAGGGCTTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	81104005	81109080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_81104154_81104612_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
ENSMUST00000057816.15	chr2	-	1849	15	FSM	ENSMUSG00000089917.8	ENSMUST00000057816.15	1849	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTGTGGCAGAATGTAACC	NA	NA	NA	NA	NA	NA	NA	NA	181223801	181210941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214262_181214280_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
ENSMUST00000057836.12	chr11	-	2862	4	FSM	ENSMUSG00000049755.15	ENSMUST00000057836.12	2862	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGTGGTTTCAATAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	58214149	58205949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_58208361_58210149_58210417_58213425_58213556_58214095
ENSMUST00000057843.12	chr11	-	1459	4	FSM	ENSMUSG00000051355.19	ENSMUST00000057843.12	1459	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGTGGGTAAAAAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	22928996	22849763	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_22850058_22906410_22906693_22923899_22924103_22928316
ENSMUST00000057844.10	chr13	+	739	2	FSM	ENSMUSG00000045767.10	ENSMUST00000057844.10	4652	2	0	3913	0	-3913	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGCACGGGCTTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	55840936	55847400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_55841161_55846885
ENSMUST00000057884.6	chr11	+	1220	10	FSM	ENSMUSG00000023170.15	ENSMUST00000057884.6	1220	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCCTGAGTGCTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	69805017	69807417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
ENSMUST00000057897.10	chr17	+	1122	5	FSM	ENSMUSG00000044477.13	ENSMUST00000057897.10	2640	5	90	1428	90	-1428	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTCGCTTGGTCCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	30224127	30427566	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_30224283_30279783_30279825_30354296_30354480_30411536_30411705_30426991
ENSMUST00000057907.10	chr4	-	1829	6	FSM	ENSMUSG00000029001.16	ENSMUST00000057907.10	1829	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTGCCCTGCGGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	148244540	148237259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_148238102_148240602_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
ENSMUST00000057910.16	chr10	-	5250	15	FSM	ENSMUSG00000047417.19	ENSMUST00000057910.16	5250	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACAAAGCCCAGGTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	80397394	80376758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_80378316_80378398_80378659_80378741_80378858_80379134_80379246_80379480_80379555_80379836_80379951_80380116_80380255_80380593_80380708_80381296_80381421_80381709_80381842_80382135_80382300_80383606_80383821_80384265_80384368_80385166_80386900_80397097
ENSMUST00000057921.10	chr11	+	2242	5	FSM	ENSMUSG00000062421.14	ENSMUST00000057921.10	2242	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTCATGTTCTCCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	103857564	103876163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_103857654_103859904_103860072_103863778_103863890_103872519_103872645_103874413
ENSMUST00000057934.10	chr8	+	2738	18	FSM	ENSMUSG00000001472.18	ENSMUST00000057934.10	2738	18	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAAATTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	124100562	124128631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124127814
ENSMUST00000058030.10	chr4	+	2797	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGATCAGATTATACTTGA	NA	NA	NA	NA	NA	NA	NA	NA	89055358	89099318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
ENSMUST00000058109.9	chr11	+	1362	5	FSM	ENSMUSG00000046756.11	ENSMUST00000058109.9	1962	5	0	600	0	403	multi-exon	TRUE	canonical	NA	NA	NA	NA	311	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTCACACAGTGAGATGC	NA	NA	NA	NA	NA	NA	NA	NA	115494750	115498262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_115495070_115495546_115495739_115495848_115495913_115496795_115496964_115497643
ENSMUST00000058142.4	chr3	-	1222	2	FSM	ENSMUSG00000045539.4	ENSMUST00000058142.4	1222	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCCTCTGTGTGATATT	NA	NA	NA	NA	NA	NA	NA	NA	92366027	92363808	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_92364997_92365993
ENSMUST00000058163.11	chr11	+	2081	18	FSM	ENSMUSG00000020280.13	ENSMUST00000058163.11	3559	18	0	1478	0	-119	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGACATACAGGCAGCATAT	NA	NA	NA	NA	NA	NA	NA	NA	23616006	23681398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_23616454_23617277_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
ENSMUST00000058230.13	chr3	+	695	4	FSM	ENSMUSG00000038619.13	ENSMUST00000058230.13	1130	4	15	420	0	-41	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCATTGAGATCCCAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	95532336	95538993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_95532488_95534059_95534186_95535851_95536019_95538742
ENSMUST00000058240.14	chr14	-	1986	7	FSM	ENSMUSG00000044551.14	ENSMUST00000058240.14	1986	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGACTGTTAAATGACC	NA	NA	NA	NA	NA	NA	NA	NA	70396951	70391853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_70392726_70393298_70393406_70393609_70393726_70393864_70393968_70394107_70394249_70394627_70395104_70396780
ENSMUST00000058245.5	chr6	+	918	5	FSM	ENSMUSG00000040242.15	ENSMUST00000058245.5	918	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGTGTGCTTTTCATGGC	NA	NA	NA	NA	NA	NA	NA	NA	146479418	146494363	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131
ENSMUST00000058280.13	chr7	+	1430	10	FSM	ENSMUSG00000036892.13	ENSMUST00000058280.13	1853	10	59	364	-42	9	multi-exon	FALSE	canonical	NA	NA	NA	NA	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTCTGTACTTCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	30193105	30212463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_30193283_30193356_30193554_30193636_30193776_30193862_30193950_30205645_30205727_30205801_30205958_30206035_30206203_30209191_30209303_30210562_30210649_30212234
ENSMUST00000058333.10	chr7	+	694	4	FSM	ENSMUSG00000089847.9	ENSMUST00000058333.10	694	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAAGTGCTTTCTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	105289654	105291050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_105289830_105289968_105290065_105290234_105290436_105290828
ENSMUST00000058370.14	chr11	+	2778	6	FSM	ENSMUSG00000049957.15	ENSMUST00000058370.14	2778	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGAGAACATTCTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	120348940	120355184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_120349105_120349437_120349572_120350867_120351091_120352541_120352625_120352831_120352912_120353090
ENSMUST00000058383.9	chr6	-	1896	5	FSM	ENSMUSG00000045896.15	ENSMUST00000058383.9	3982	5	41	2045	41	-2045	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTTTTTCATATGAACTG	NA	NA	NA	NA	NA	NA	NA	NA	83808682	83784427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_83785875_83786880_83787058_83791703_83791852_83808252_83808311_83808616
ENSMUST00000058393.9	chr4	+	1098	4	FSM	ENSMUSG00000047613.11	ENSMUST00000058393.9	1098	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGTTCACAAAAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	154041693	154046382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_154041780_154044205_154044320_154044987_154045450_154045946
ENSMUST00000058437.14	chr1	-	1163	7	FSM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	NA	NA	NA	NA	NA	NA	NA	16174886	16171518	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
ENSMUST00000058438.9	chr11	+	3126	7	FSM	ENSMUSG00000049354.9	ENSMUST00000058438.9	5750	7	28	2596	28	1270	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGGGCCTGTAGGGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	105927725	105947554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_105928088_105937516_105937676_105938462_105938575_105938968_105939088_105942582_105942793_105944556_105944675_105945508
ENSMUST00000058488.9	chr9	-	609	3	FSM	ENSMUSG00000032353.10	ENSMUST00000058488.9	1346	3	245	492	245	-492	multi-exon	FALSE	canonical	NA	NA	NA	NA	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTACAGGGCTGGTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	89586876	89581750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_89582033_89584824_89585074_89586798
ENSMUST00000058534.7	chr8	-	2997	3	FSM	ENSMUSG00000045248.7	ENSMUST00000058534.7	2997	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAGTTTTGGAATCATT	NA	NA	NA	NA	NA	NA	NA	NA	73302114	73248404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_73250951_73251366_73251442_73301738
ENSMUST00000058626.9	chr3	-	873	10	FSM	ENSMUSG00000028273.16	ENSMUST00000058626.9	873	10	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGAGCCCTGCTCCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	142101457	142009088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_142009183_142009703_142009741_142010057_142010233_142017713_142017740_142017783_142017789_142017883_142017976_142020166_142020210_142058494_142058647_142097473_142097612_142101346
ENSMUST00000058639.11	chr12	-	1109	6	FSM	ENSMUSG00000049882.11	ENSMUST00000058639.11	1109	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	NA	NA	NA	NA	NA	NA	NA	69629884	69624401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
ENSMUST00000058659.9	chr15	-	1144	2	FSM	ENSMUSG00000044986.11	ENSMUST00000058659.9	1144	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	327	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTCTGCCTCCTTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	78290107	78283755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_78284231_78289438
ENSMUST00000058692.9	chr9	+	1728	7	FSM	ENSMUSG00000032006.16	ENSMUST00000058692.9	3131	7	77	1326	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAAACAAGTTTTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	6168660	6377519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_6168919_6288489_6288677_6293756_6293938_6333323_6333387_6337242_6337442_6359702_6359918_6376894
ENSMUST00000058714.10	chr10	+	1816	2	FSM	ENSMUSG00000047139.10	ENSMUST00000058714.10	1816	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGTCTGTTGAATTTAT	NA	NA	NA	NA	NA	NA	NA	NA	43455164	43460261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_43455319_43458599
ENSMUST00000058720.13	chr9	-	2888	14	FSM	ENSMUSG00000042790.17	ENSMUST00000058720.13	3964	14	374	702	-96	216	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGCCACCATCCCTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	45817801	45775508	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45817649
ENSMUST00000058733.9	chr8	-	1612	4	FSM	ENSMUSG00000044600.15	ENSMUST00000058733.9	642	4	133	-1103	133	1103	multi-exon	FALSE	canonical	NA	NA	NA	NA	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAGACCATCTTGATGGA	NA	NA	NA	NA	NA	NA	NA	NA	73324760	73320227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_73321653_73322699_73322791_73323809_73323863_73324717
ENSMUST00000058747.4	chr10	+	1144	5	FSM	ENSMUSG00000045555.4	ENSMUST00000058747.4	1529	5	0	385	0	-385	multi-exon	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGAATACAAAGTGGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	40559277	40686694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_40559661_40605982_40606082_40613670_40613811_40622327_40622557_40686401
ENSMUST00000058868.9	chr9	+	2223	7	FSM	ENSMUSG00000036411.11	ENSMUST00000058868.9	2223	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGTTCAGTTCTTATT	NA	NA	NA	NA	NA	NA	NA	NA	22322808	22355977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_22323046_22335408_22336104_22341651_22341796_22342971_22343105_22346390_22346697_22351162_22351261_22355367
ENSMUST00000058880.9	chr7	-	710	5	FSM	ENSMUSG00000006335.17	ENST00000391757.1	708	5	1	-3	1	3	multi-exon	FALSE	canonical	NA	NA	NA	NA	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCTATGTACACTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	3632085	3623333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_3623474_3623775_3623946_3624061_3624132_3627597_3627669_3631826
ENSMUST00000058906.7	chr10	+	939	4	FSM	ENSMUSG00000049422.8	ENSMUST00000058906.7	939	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGTTTACTTTAGACCA	NA	NA	NA	NA	NA	NA	NA	NA	75771406	75773559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_75771839_75772071_75772280_75773140_75773289_75773408
ENSMUST00000058914.10	chr15	+	1285	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	0	697	0	-697	multi-exon	FALSE	canonical	NA	NA	NA	NA	321	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACAGAATTCCAGACCAAC	NA	NA	NA	NA	NA	NA	NA	NA	98927771	98935294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
ENSMUST00000059021.10	chr3	-	1749	5	FSM	ENSMUSG00000040374.14	ENSMUST00000059021.10	1749	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATTGTGCATTTATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	5641299	5625559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5641097
ENSMUST00000059080.7	chr2	+	394	6	FSM	ENSMUSG00000039001.13	ENSMUST00000059080.7	394	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTTTGCTGTTTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	179899169	179900238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_179899241_179899413_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
ENSMUST00000059081.13	chr9	+	702	5	FSM	ENSMUSG00000039217.14	ENSMUST00000059081.13	702	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCATGTGTCCAGCCCAATT	NA	NA	NA	NA	NA	NA	NA	NA	50486572	50493137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_50486649_50488836_50488849_50489060_50489193_50490586_50490721_50492789
ENSMUST00000059093.7	chr8	+	646	2	FSM	ENSMUSG00000051671.8	ENSMUST00000059093.7	747	2	13	88	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTATTTTCCTTTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	127149266	127152084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_127149570_127151741
ENSMUST00000059112.12	chr15	-	1049	4	FSM	ENSMUSG00000048175.14	ENSMUST00000059112.12	1049	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGCTGTGTGGTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	98043540	98033594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_98034320_98039164_98039270_98040531_98040692_98043481
ENSMUST00000059155.11	chr5	+	1895	5	FSM	ENSMUSG00000045294.12	ENSMUST00000059155.11	2697	5	0	802	0	594	multi-exon	FALSE	canonical	NA	NA	NA	NA	399	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGTCATTTCAGAGGTGCG	NA	NA	NA	NA	NA	NA	NA	NA	28276360	28282858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_28276794_28278544_28278670_28279479_28279647_28280059_28280160_28281788
ENSMUST00000059229.16	chr5	-	2044	6	FSM	ENSMUSG00000029500.17	ENSMUST00000059229.16	2044	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTATTTGTTTTAAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	110417753	110407020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_110408304_110413377_110413509_110413605_110413695_110413776_110413903_110414952_110415132_110417517
ENSMUST00000059297.6	chrX	+	1694	4	FSM	ENSMUSG00000045427.14	ENSMUST00000059297.6	2364	4	0	670	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTGGTCAGCTTCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	133502034	133507133	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603
ENSMUST00000059305.17	chr7	-	1932	10	FSM	ENSMUSG00000102252.6	ENSMUST00000059305.17	1932	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATTCTCAGAAGTCAATG	NA	NA	NA	NA	NA	NA	NA	NA	59654859	59632242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59654783
ENSMUST00000059319.8	chr11	+	1568	4	FSM	ENSMUSG00000049904.8	ENSMUST00000059319.8	1568	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTATCTGTGTAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	22462087	22469234	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_22462584_22467187_22467292_22467407_22467522_22468380
ENSMUST00000059331.9	chr7	+	2173	3	FSM	ENSMUSG00000048481.16	ENSMUST00000059331.9	2173	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTGAGGCTCTGAGACAG	NA	NA	NA	NA	NA	NA	NA	NA	18725169	18735689	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_18725280_18725756_18726546_18734415
ENSMUST00000059562.14	chr3	+	1396	4	FSM	ENSMUSG00000048332.14	ENSMUST00000059562.14	2108	4	55	657	0	-657	multi-exon	FALSE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACATTCCCTGTAGATGA	NA	NA	NA	NA	NA	NA	NA	NA	52949003	53168443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_52949196_52950539_52951113_53139150_53139250_53167911
ENSMUST00000059562.14-1	chr3	+	1372	4	FSM	ENSMUSG00000048332.14	ENSMUST00000059562.14	2108	4	211	525	156	-525	multi-exon	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACGCACACATCATACGC	NA	NA	NA	NA	NA	NA	NA	NA	52949159	53168575	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_52949196_52950539_52951113_53139150_53139250_53167911
ENSMUST00000059566.11	chr2	+	1867	10	FSM	ENSMUSG00000027257.14	ENSMUST00000059566.11	1867	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCGTCTTTTGATAGCC	NA	NA	NA	NA	NA	NA	NA	NA	91086506	91095024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_91086689_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
ENSMUST00000059582.9	chr19	-	617	5	FSM	ENSMUSG00000024667.13	ENSMUST00000059582.9	999	5	15	367	15	-309	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGGATCATCAGCAGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	10533100	10528222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
ENSMUST00000059619.3	chr15	+	1690	3	FSM	ENSMUSG00000049521.3	ENSMUST00000059619.3	2560	3	0	870	0	-870	multi-exon	FALSE	canonical	NA	NA	NA	NA	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTTGCCCCAGATCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	78726823	78734227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_78726926_78731294_78732020_78733364
ENSMUST00000059642.17	chr7	-	1540	7	FSM	ENSMUSG00000030591.18	ENSMUST00000059642.17	1540	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	28880126	28873612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
ENSMUST00000059666.6	chr14	-	2315	2	FSM	ENSMUSG00000045107.6	ENSMUST00000059666.6	2315	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTCCTTCAGTGGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	20133251	20125703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_20127713_20132945
ENSMUST00000059680.7	chr15	+	1211	4	FSM	ENSMUSG00000022200.9	ENSMUST00000059680.7	2652	4	46	1395	0	-1395	multi-exon	TRUE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTCCCACACTAATAAT	NA	NA	NA	NA	NA	NA	NA	NA	12321581	12349956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_12322043_12339713_12339846_12343122_12343238_12349453
ENSMUST00000059802.7	chr9	+	710	4	FSM	ENSMUSG00000048758.15	ENSMUST00000059802.7	710	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGTGTCTGTTGTCATA	NA	NA	NA	NA	NA	NA	NA	NA	106306737	106308766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_106306839_106307168_106307214_106307506_106307572_106308267
ENSMUST00000059817.12	chr13	-	1359	5	FSM	ENSMUSG00000044934.14	ENSMUST00000059817.12	3532	5	576	1597	576	-1597	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGACTGGAGACTTTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	64300440	64282428	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_64283351_64290021_64290161_64291968_64292089_64293343_64293495_64300413
ENSMUST00000059955.15	chr16	+	999	5	FSM	ENSMUSG00000022792.17	ENSMUST00000059955.15	1574	5	575	0	575	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	275	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAGAACAATCCTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	16121416	16127504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_16121612_16122399_16122568_16124326_16124483_16125073_16125245_16127195
ENSMUST00000059975.8	chr1	+	2112	3	FSM	ENSMUSG00000051185.10	ENSMUST00000059975.8	2112	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGCGTTCTAGTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	95241347	95263009	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_95241976_95252833_95252969_95261660
ENSMUST00000059980.11	chr1	+	362	4	FSM	ENSMUSG00000046330.11	ENSMUST00000059980.11	558	4	0	196	0	55	multi-exon	FALSE	canonical	NA	NA	NA	NA	352	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTTTTTTTTTTGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	72750448	72752776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_72750483_72750830_72750960_72751300_72751384_72752660
ENSMUST00000060061.11	chr3	+	456	3	FSM	ENSMUSG00000047824.14	ENSMUST00000060061.11	3198	3	163	2579	163	-2579	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAAGTGGGGGGCGCAGGC	NA	NA	NA	NA	NA	NA	NA	NA	89337730	89339856	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89338037_89338433_89338484_89339756
ENSMUST00000060223.4	chr18	+	1308	2	FSM	ENSMUSG00000049090.4	ENSMUST00000060223.4	3430	2	0	2122	0	-682	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAACAAAAGTATAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	84106187	84113531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_84106499_84112534
ENSMUST00000060226.11	chr5	+	420	4	FSM	ENSMUSG00000029390.14	ENSMUST00000060226.11	2074	4	260	1394	260	-1394	multi-exon	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCTTCTTCGAAGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	124679017	124687175	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_124679105_124681034_124681228_124684958_124685067_124687143
ENSMUST00000060232.8	chr4	+	2133	8	FSM	ENSMUSG00000047187.10	ENSMUST00000060232.8	2133	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTAATGGCTGCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	8535643	8607778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_8535909_8561151_8561224_8572525_8572594_8577954_8578038_8578470_8578564_8582381_8582494_8604373_8604443_8606407
ENSMUST00000060251.8	chr9	-	1333	4	FSM	ENSMUSG00000038412.9	ENSMUST00000060251.8	2232	4	669	230	-81	-230	multi-exon	FALSE	canonical	NA	NA	NA	NA	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGGAAATACATGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	121686759	121677858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_121678756_121679253_121679389_121681556_121681676_121686577
ENSMUST00000060419.2	chr4	-	1445	2	FSM	ENSMUSG00000046623.9	ENSMUST00000060419.2	1445	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGTAGTCAGGCGGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	127247874	127244878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_127246275_127247825
ENSMUST00000060427.6	chr8	-	1524	1	FSM	ENSMUSG00000053560.6	ENSMUST00000060427.6	1524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4560	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGCTTGTCTGGCTTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	85389483	85387959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_85388000_85389500
ENSMUST00000060433.10	chr7	+	220	3	FSM	ENSMUSG00000045752.14	ENSMUST00000060433.10	1519	3	175	1124	56	-1058	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGGCCTGGAGGCTGAT	NA	NA	NA	NA	NA	NA	NA	NA	142623160	142623706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_142623251_142623491_142623588_142623672
ENSMUST00000060435.8	chr4	-	3445	12	FSM	ENSMUSG00000050989.11	ENSMUST00000060435.8	3445	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTGCTTTTCCTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	134279477	134265202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_134267101_134267944_134268047_134268133_134268247_134269647_134269754_134270023_134270213_134270360_134270443_134271895_134272034_134272499_134272625_134272791_134273002_134275261_134275396_134278727_134278846_134279247
ENSMUST00000060444.6	chr11	+	2061	2	FSM	ENSMUSG00000043602.6	ENSMUST00000060444.6	2061	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCTCTGGCCTTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	70655034	70663754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_70655376_70662034
ENSMUST00000060447.13	chr2	-	968	7	FSM	ENSMUSG00000051730.16	ENSMUST00000060447.13	968	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCATTTTCTCTTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	69715959	69701541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69709445_69709529_69711110_69711293_69711640_69711756_69715592
ENSMUST00000060455.15	chr2	+	1080	11	FSM	ENSMUSG00000023572.17	ENSMUST00000060455.15	1569	11	29	460	0	-69	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTAATGCCGTTGACCA	NA	NA	NA	NA	NA	NA	NA	NA	120838912	120846925	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_120839091_120839198_120839259_120839523_120839604_120840307_120840390_120841914_120842012_120842163_120842238_120842833_120842911_120843179_120843458_120844438_120844500_120846611_120846659_120846879
ENSMUST00000060477.10	chr19	+	1002	1	FSM	ENSMUSG00000045104.10	ENSMUST00000060477.10	1002	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGCCAGTCTCTAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	21914743	21915745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_21914700_21915700
ENSMUST00000060490.11	chr13	+	2765	9	FSM	ENSMUSG00000007617.19	ENSMUST00000060490.11	2765	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGTAGTTTCTACAGTA	NA	NA	NA	NA	NA	NA	NA	NA	93441666	93540298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_93441811_93478263_93478421_93483076_93483209_93485712_93485806_93492447_93492588_93524031_93524189_93528198_93528310_93529535_93529617_93538548
ENSMUST00000060513.8	chr9	-	2859	11	FSM	ENSMUSG00000031969.17	ENSMUST00000060513.8	2859	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTATTTTCATGTT	NA	NA	NA	NA	NA	NA	NA	NA	26910845	26885439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903557_26910689
ENSMUST00000060531.16	chr5	+	2170	3	FSM	ENSMUSG00000046079.17	ENSMUST00000060531.16	3923	3	0	1753	0	-1748	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGGCCTCGAGTCGCTGCG	NA	NA	NA	NA	NA	NA	NA	NA	105847834	105961328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_105848121_105880095_105880241_105959589
ENSMUST00000060579.10	chr12	+	2614	1	FSM	ENSMUSG00000043998.11	ENSMUST00000060579.10	2614	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1492	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCATCACATCTTAATAT	NA	NA	NA	NA	NA	NA	NA	NA	69230930	69233544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_69230900_69233500
ENSMUST00000060608.13	chr1	+	2223	13	FSM	ENSMUSG00000049439.14	ENSMUST00000060608.13	2223	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGGATTGTTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	60382481	60427219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_60382617_60391279_60391330_60392067_60392235_60393672_60393816_60402348_60402517_60405807_60405887_60410379_60410496_60411748_60411804_60415225_60415347_60418532_60418645_60421562_60421628_60426063_60426154_60426297
ENSMUST00000060640.5	chr8	+	538	1	FSM	ENSMUSG00000049891.5	ENSMUST00000060640.5	538	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATAGGCAGTGGTTCTTAG	NA	NA	NA	NA	NA	NA	NA	NA	76125138	76125676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_76125100_76125700
ENSMUST00000060652.5	chr15	+	3000	5	FSM	ENSMUSG00000022338.9	ENSMUST00000060652.5	3000	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGGCTCTCATTGATTT	NA	NA	NA	NA	NA	NA	NA	NA	44291506	44301652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297294_44297370_44299007
ENSMUST00000060710.9	chr18	-	1945	15	FSM	ENSMUSG00000044201.11	ENSMUST00000060710.9	1945	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	34884586	34866045	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
ENSMUST00000060913.8	chr1	+	544	2	FSM	ENSMUSG00000047067.8	ENSMUST00000060913.8	1314	2	0	770	0	-770	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCCCATTGATCCGGAGT	NA	NA	NA	NA	NA	NA	NA	NA	92834702	92835387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_92835146_92835286
ENSMUST00000060987.15	chr10	+	1071	6	FSM	ENSMUSG00000035242.16	ENSMUST00000060987.15	1071	6	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	80662489	80665124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80662740_80664070_80664126_80664129_80664217_80664294_80664468_80664544_80664631_80664704
ENSMUST00000060991.6	chr10	-	1556	6	FSM	ENSMUSG00000006736.10	ENSMUST00000060991.6	1556	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTCTTGTTTTCCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	126906133	126903148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_126904060_126904137_126904252_126904348_126904481_126904776_126904858_126905214_126905383_126905983
ENSMUST00000060992.6	chr11	+	1142	7	FSM	ENSMUSG00000020458.17	ENSMUST00000060992.6	1773	7	0	631	0	174	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTATATTCTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	29668562	29692285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_29668883_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
ENSMUST00000060997.6	chr3	-	447	1	FSM	ENSMUSG00000044434.6	ENSMUST00000060997.6	447	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCTGCAAGAACCCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	34059612	34059165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_34059200_34059600
ENSMUST00000061073.2	chr17	-	957	1	FSM	ENSMUSG00000051639.4	ENSMUST00000061073.2	957	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	247	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCAGAGCTGTCTGGATT	NA	NA	NA	NA	NA	NA	NA	NA	6172439	6171482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_6171500_6172400
ENSMUST00000061111.10	chr19	+	2310	2	FSM	ENSMUSG00000044345.10	ENSMUST00000061111.10	3066	2	0	756	0	-756	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGTGGAAGAGCCGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	42135838	42139386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_42137999_42139236
ENSMUST00000061135.8	chr4	+	788	3	FSM	ENSMUSG00000039693.12	ENSMUST00000061135.8	1589	3	0	801	0	125	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGCCGAGGAGGAGCACC	NA	NA	NA	NA	NA	NA	NA	NA	48539934	48561117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_48539998_48552379_48552831_48560843
ENSMUST00000061143.15	chr4	-	3351	17	FSM	ENSMUSG00000028849.18	ENSMUST00000061143.15	3351	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	NA	NA	NA	NA	NA	NA	NA	126150076	126125959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126131072_126132314_126132426_126133815_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ENSMUST00000061158.5	chr2	+	935	8	FSM	ENSMUSG00000051154.12	ENSMUST00000061158.5	935	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTGGAGTTTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	18677233	18681042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_18677415_18678705_18678818_18678935_18679000_18679091_18679127_18679466_18679528_18679619_18679677_18679760_18679821_18680677
ENSMUST00000061209.7	chr9	+	595	2	FSM	ENSMUSG00000049305.7	ENSMUST00000061209.7	3092	2	8	2489	8	-2357	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTAGGCTTCCCTGCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	108337733	108340648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_108337817_108340136
ENSMUST00000061280.17	chr1	+	3782	6	FSM	ENSMUSG00000051285.18	ENSMUST00000061280.17	5232	6	184	1266	184	-1266	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGATTTAAATATAGACAAAA	NA	NA	NA	NA	NA	NA	NA	NA	7159327	7242586	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_7159441_7190417_7190840_7217860_7217964_7231115_7231288_7233471_7233596_7239738
ENSMUST00000061311.9	chr17	-	306	1	FSM	ENSMUSG00000021631.9	ENSMUST00000061311.9	306	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACCGTCGTGGCTGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	54174048	54173742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_54173700_54174000
ENSMUST00000061372.7	chr10	+	3086	1	FSM	ENSMUSG00000047514.7	ENSMUST00000061372.7	3086	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	480	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATTTTCTTAACTTTA	NA	NA	NA	NA	NA	NA	NA	NA	34158185	34161271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_34158200_34161300
ENSMUST00000061496.17	chr19	+	3193	13	FSM	ENSMUSG00000024985.21	ENSMUST00000061496.17	3193	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCAGCTGCCGCTTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	55730700	55921685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_55730963_55731207_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55912961_55913013_55919865
ENSMUST00000061508.8	chr8	+	1999	2	FSM	ENSMUSG00000047264.9	ENSMUST00000061508.8	1999	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	349	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTTGTTACTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	3543137	3547208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_3543310_3545381
ENSMUST00000061537.12	chr1	+	565	3	FSM	ENSMUSG00000049881.14	ENSMUST00000061537.12	1194	3	626	3	626	-3	multi-exon	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTGCTGGCCCAGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	157240547	157247803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_157240696_157241313_157241366_157247438
ENSMUST00000061587.13	chr7	+	1115	2	FSM	ENSMUSG00000043964.15	ENSMUST00000061587.13	1996	2	0	881	0	-423	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGCTGGAGCCACCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	127368986	127373441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_127369389_127372728
ENSMUST00000061590.6	chr3	+	791	2	FSM	ENSMUSG00000060798.8	ENSMUST00000061590.6	1589	2	0	798	0	-798	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTGAACCACGTGAGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	40585434	40608248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_40586113_40608135
ENSMUST00000061688.11	chr17	+	1844	12	FSM	ENSMUSG00000116953.2	ENSMUST00000061688.11	1844	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGGCTCTGTTCTTAA	NA	NA	NA	NA	NA	NA	NA	NA	15198729	15211167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_15199162_15199762_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079_15205178_15206035_15206173_15206979_15207095_15207857_15207961_15208335_15208366_15209159_15209229_15210808
ENSMUST00000061703.10	chr17	+	644	5	FSM	ENSMUSG00000045257.11	ENSMUST00000061703.10	644	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTTTTTGAATTATGTA	NA	NA	NA	NA	NA	NA	NA	NA	80597640	80604902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_80597767_80599753_80599808_80601898_80602006_80602941_80603079_80604682
ENSMUST00000061786.6	chr11	+	1597	6	FSM	ENSMUSG00000050270.13	ENSMUST00000061786.6	1597	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAATTACTGGGGAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	66915979	66926138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_66916098_66916734_66916765_66920791_66920853_66921887_66922012_66923006_66923067_66924934
ENSMUST00000061829.8	chr18	-	1641	2	FSM	ENSMUSG00000051439.8	ENSMUST00000061829.8	1641	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	295	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGTGTTTGTTGGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	36859851	36858119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_36859451_36859541
ENSMUST00000061925.5	chr15	+	1851	3	FSM	ENSMUSG00000049148.9	ENSMUST00000061925.5	1851	3	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACTGAGTGTCAACTTCA	NA	NA	NA	NA	NA	NA	NA	NA	4404985	4605035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_4405298_4546100_4546810_4604205
ENSMUST00000061937.13	chr3	+	1619	7	FSM	ENSMUSG00000028189.13	ENSMUST00000061937.13	2892	7	23	1250	0	-1172	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATCACTGGCTTTGGACA	NA	NA	NA	NA	NA	NA	NA	NA	146156247	146170354	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_146156386_146160101_146160241_146160702_146160912_146163090_146163263_146164497_146164596_146165433_146165596_146169653
ENSMUST00000061973.5	chr9	-	1084	2	FSM	ENSMUSG00000049734.10	ENSMUST00000061973.5	1084	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGCCGCCTCTGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	108888802	108887000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_108887997_108888714
ENSMUST00000062092.7	chr12	-	865	2	FSM	ENSMUSG00000047832.10	ENSMUST00000062092.7	2425	2	15	1545	15	-1537	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTGGAAGATGCTCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	112792994	112785393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_112785733_112792468
ENSMUST00000062125.11	chr9	+	607	2	FSM	ENSMUSG00000048429.11	ENSMUST00000062125.11	3170	2	0	2563	0	-2563	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGTGGGCGGCTGCGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	21504017	21504703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_21504367_21504445
ENSMUST00000062153.12	chr5	-	1309	7	FSM	ENSMUSG00000029392.13	ENSMUST00000062153.12	2249	7	224	716	224	-716	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACACACATCCACGAGTC	NA	NA	NA	NA	NA	NA	NA	NA	124669230	124631858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_124631908_124639902_124639996_124641617_124641797_124652581_124652807_124653580_124653700_124659313_124659465_124668737
ENSMUST00000062242.7	chr18	+	666	1	FSM	ENSMUSG00000048188.7	ENSMUST00000062242.7	666	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCAAGAACTTTCTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	43304223	43304889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_43304200_43304900
ENSMUST00000062289.11	chr1	-	2487	7	FSM	ENSMUSG00000042182.17	ENSMUST00000062289.11	2487	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACTTTCTTATGGTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	33946897	33891132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_33892449_33901734_33901855_33902822_33903016_33903603_33903825_33917340_33917519_33922521_33922730_33946646
ENSMUST00000062356.7	chr4	+	1605	2	FSM	ENSMUSG00000047945.7	ENSMUST00000062356.7	1605	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTGGTCTTCTGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	129407373	129409778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_129407710_129408509
ENSMUST00000062389.6	chr19	+	1566	9	FSM	ENSMUSG00000024805.17	ENSMUST00000062389.6	1566	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACCCAAAATGCC	NA	NA	NA	NA	NA	NA	NA	NA	36387147	36433592	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
ENSMUST00000062405.8	chr11	-	1611	2	FSM	ENSMUSG00000049892.8	ENSMUST00000062405.8	1611	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCTTTGCTTTTAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	59855770	59854006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_59855193_59855345
ENSMUST00000062429.7	chr6	-	1984	1	FSM	ENSMUSG00000043024.7	ENSMUST00000062429.7	1984	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	455	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAATCTGCCTTCAGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	108542549	108540565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_108540600_108542500
ENSMUST00000062492.11	chr15	+	464	5	FSM	ENSMUSG00000001289.13	ENSMUST00000062492.11	464	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCAATGGCCTCCTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	102234582	102239845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102234696_102235252_102235285_102236956_102237032_102237146_102237253_102239707
ENSMUST00000062525.11	chr1	-	2492	7	FSM	ENSMUSG00000048234.14	ENSMUST00000062525.11	2492	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTCTATGTAACAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	39616486	39590376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_39591597_39594558_39594752_39597395_39597493_39599773_39599857_39603128_39603198_39604162_39604414_39615907
ENSMUST00000062530.5	chr11	+	680	3	FSM	ENSMUSG00000043372.13	ENSMUST00000062530.5	1910	3	0	1230	0	-545	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACAGTGATGGGCAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	103024170	103029472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_103024284_103024860_103024968_103029012
ENSMUST00000062542.5	chrX	+	1572	2	FSM	ENSMUSG00000046180.12	ENSMUST00000062542.5	1572	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCAGCAGTGTTTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	57956820	57965664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_57956922_57964193
ENSMUST00000062572.3	chr5	-	2293	1	FSM	ENSMUSG00000049551.3	ENSMUST00000062572.3	2293	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTGTGTTCTATCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	135280084	135277791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_135277800_135280100
ENSMUST00000062601.14	chr3	-	624	5	FSM	ENSMUSG00000062006.13	ENSMUST00000062601.14	624	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	493	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTTATCTGTGATTTG	NA	NA	NA	NA	NA	NA	NA	NA	130523986	130520479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523769
ENSMUST00000062626.4	chr6	+	829	2	FSM	ENSMUSG00000049232.4	ENSMUST00000062626.4	3007	2	0	2178	0	-2178	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGTTTTAGAAACCTCG	NA	NA	NA	NA	NA	NA	NA	NA	59185854	59186840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_59186167_59186323
ENSMUST00000062753.3	chr19	+	918	2	FSM	ENSMUSG00000047044.8	ENSMUST00000062753.3	1677	2	43	716	0	-716	multi-exon	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTGGTACACGGAATGAA	NA	NA	NA	NA	NA	NA	NA	NA	18690599	18695076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_18691024_18694582
ENSMUST00000062755.10	chr6	+	646	4	FSM	ENSMUSG00000042992.16	ENSMUST00000062755.10	1764	4	21	1097	21	-173	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGATACGCCAAGTATG	NA	NA	NA	NA	NA	NA	NA	NA	134617923	134687053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_134618221_134621291_134621436_134662926_134663085_134687006
ENSMUST00000062802.5	chr4	+	465	3	FSM	ENSMUSG00000045854.5	ENSMUST00000062802.5	465	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTTGGAATCCTCAATTG	NA	NA	NA	NA	NA	NA	NA	NA	32800252	32801383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_32800336_32800609_32800751_32801142
ENSMUST00000062824.12	chr4	+	470	3	FSM	ENSMUSG00000048772.16	ENSMUST00000062824.12	991	3	0	521	0	-521	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTACCGCTACGTGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	117109147	117125256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_117109332_117123056_117123173_117125086
ENSMUST00000062904.11	chr4	+	1754	16	FSM	ENSMUSG00000039768.17	ENSMUST00000062904.11	3151	16	48	1349	48	-437	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGAAGCAGGGAAAACCC	NA	NA	NA	NA	NA	NA	NA	NA	152018195	152065245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
ENSMUST00000062915.9	chr7	+	653	2	FSM	ENSMUSG00000050973.12	ENSMUST00000062915.9	4189	2	51	3485	51	-3485	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGACCCGGAACAGTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	79882663	79888324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_79882954_79887961
ENSMUST00000063040.12	chr4	-	436	3	ISM	ENSMUSG00000050608.12	ENSMUST00000143971.2	2549	4	25154	1977	25154	-1977	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGCAAGCAATGCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	138833270	138831101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_138831324_138832300_138832411_138833166
ENSMUST00000063089.12	chr16	-	1644	6	FSM	ENSMUSG00000050312.13	ENSMUST00000063089.12	3813	6	11	2158	11	-2158	multi-exon	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTGACAGATCAAGAACCA	NA	NA	NA	NA	NA	NA	NA	NA	62607129	62554964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_62555782_62589969_62590092_62591020_62591176_62596650_62596995_62606150_62606261_62607033
ENSMUST00000063117.10	chr12	+	744	9	FSM	ENSMUSG00000021033.12	ENSMUST00000063117.10	1656	9	54	858	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCCCAGATGCTGGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	87194545	87210639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
ENSMUST00000063138.8	chr10	+	1141	2	FSM	ENSMUSG00000047669.9	ENSMUST00000063138.8	2140	2	0	999	0	-999	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCTGTTCCCGCACTTGC	NA	NA	NA	NA	NA	NA	NA	NA	55983012	55991977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_55983126_55990949
ENSMUST00000063197.4	chr5	+	592	1	FSM	ENSMUSG00000043484.4	ENSMUST00000063197.4	592	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCTGAAGACATCTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	69618494	69619086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_69618500_69619100
ENSMUST00000063344.15	chr17	+	1861	11	FSM	ENSMUSG00000002279.20	ENSMUST00000063344.15	1861	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGCCTCCTGTCTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	25798147	25881800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_25798354_25804516_25804827_25822736_25822748_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
ENSMUST00000063414.9	chr15	+	1682	13	FSM	ENSMUSG00000051864.11	ENSMUST00000063414.9	3229	13	0	1547	0	-374	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGGCCTCACCCTAGGGA	NA	NA	NA	NA	NA	NA	NA	NA	86098659	86381157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_86098838_86118930_86118988_86119716_86120055_86123317_86123495_86176334_86176406_86183847_86183977_86185746_86185810_86195927_86196043_86235854_86235965_86250805_86250882_86275277_86275406_86333392_86333489_86381013
ENSMUST00000063446.13	chr11	+	1302	6	FSM	ENSMUSG00000061878.17	ENSMUST00000063446.13	2527	6	795	430	343	-413	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTGTGGATGGAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	116424093	116427070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_116424195_116424795_116425000_116425674_116425828_116425905_116426001_116426077_116426194_116426437
ENSMUST00000063531.5	chr4	-	1106	2	FSM	ENSMUSG00000028551.15	ENSMUST00000063531.5	1106	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACATTTTCCTGTGATTTT	NA	NA	NA	NA	NA	NA	NA	NA	109522569	109518072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_109518824_109522214
ENSMUST00000063542.8	chr16	+	1135	4	FSM	ENSMUSG00000022698.18	ENSMUST00000063542.8	2136	4	0	1001	0	-1001	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATCCTTGTGAGAAAATA	NA	NA	NA	NA	NA	NA	NA	NA	43960254	43980536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_43960475_43976772_43976910_43978242_43978310_43979825
ENSMUST00000063574.7	chr17	+	962	6	FSM	ENSMUSG00000015126.10	ENSMUST00000063574.7	1192	6	0	230	0	-230	multi-exon	FALSE	canonical	NA	NA	NA	NA	347	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTGGAGCTGAAGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	25459143	25461542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_25459339_25459417_25459638_25460037_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUST00000063641.11	chr16	+	517	4	FSM	ENSMUSG00000051989.12	ENSMUST00000063641.11	517	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	408	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTCTGCATTCTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	92098173	92109929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_92098232_92102175_92102286_92107688_92107858_92109749
ENSMUST00000063682.12	chr2	+	674	4	FSM	ENSMUSG00000052033.14	ENSMUST00000063682.12	935	4	0	261	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATTTCCCTTCTCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	170353154	170360782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_170353390_170357658_170357767_170358469_170358611_170360592
ENSMUST00000063694.10	chr7	-	6396	2	FSM	ENSMUSG00000052040.11	ENSMUST00000063694.10	6396	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1925	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTGCCTCGGTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	63588663	63536098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_63541546_63587714
ENSMUST00000063719.15	chr1	+	1435	6	FSM	ENSMUSG00000026411.18	ENSMUST00000063719.15	1806	6	0	371	0	-55	multi-exon	FALSE	canonical	NA	NA	NA	NA	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTTTCTGTTGTCTA	NA	NA	NA	NA	NA	NA	NA	NA	135945704	135962709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_135945801_135946243_135946346_135947395_135947488_135952355_135952465_135955134_135955267_135961805
ENSMUST00000063775.5	chr18	+	1314	6	FSM	ENSMUSG00000024544.10	ENSMUST00000063775.5	2495	6	0	1181	0	-171	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCCGACCTACAGCGAGG	NA	NA	NA	NA	NA	NA	NA	NA	68066327	68387441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_68066460_68197287_68197758_68239621_68239763_68368725_68368881_68383641_68383696_68387079
ENSMUST00000063782.12	chr9	-	1662	7	FSM	ENSMUSG00000050471.18	ENSMUST00000063782.12	1662	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGACAGCCTTCACCTTA	NA	NA	NA	NA	NA	NA	NA	NA	35179076	35128260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35146526_35146780_35155909_35156003_35179018
ENSMUST00000063854.7	chr6	+	1322	9	FSM	ENSMUSG00000052144.9	ENSMUST00000063854.7	4874	9	0	3552	0	-3544	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAGCTCAGACAGACTCC	NA	NA	NA	NA	NA	NA	NA	NA	100810582	100843343	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_100810879_100811677_100811760_100829445_100829617_100838370_100838465_100840083_100840122_100841639_100841715_100842034_100842179_100842748_100843045_100843217
ENSMUST00000063976.9	chr7	+	547	2	FSM	ENSMUSG00000052214.10	ENSMUST00000063976.9	3366	2	49	2770	0	-2770	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCAATGCTCACTGTACT	NA	NA	NA	NA	NA	NA	NA	NA	18962307	18979023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_18962510_18978678
ENSMUST00000064019.15	chr11	-	2151	13	FSM	ENSMUSG00000000538.19	ENSMUST00000064019.15	2151	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGATAGTCATGTGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	60243731	60131395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_60132172_60132643_60132720_60133533_60133652_60135887_60136012_60136461_60136511_60139756_60139891_60149681_60149799_60151880_60152040_60153474_60153610_60161143_60161294_60165749_60165829_60171024_60171110_60243582
ENSMUST00000064050.5	chr10	-	1096	3	FSM	ENSMUSG00000020083.14	ENSMUST00000064050.5	1096	3	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCCGGTGAATGACTG	NA	NA	NA	NA	NA	NA	NA	NA	61946792	61943990	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_61944903_61945662_61945790_61946735
ENSMUST00000064141.12	chr2	+	1905	15	FSM	ENSMUSG00000041966.19	ENSMUST00000064141.12	1905	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGCTTTATGACTATCC	NA	NA	NA	NA	NA	NA	NA	NA	70886124	70929486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132_70920278_70929358
ENSMUST00000064196.5	chrX	+	2583	1	FSM	ENSMUSG00000052364.5	ENSMUST00000064196.5	2583	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGTTGTCTCATAATCTA	NA	NA	NA	NA	NA	NA	NA	NA	8758620	8761203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_8758600_8761200
ENSMUST00000064231.8	chr7	-	1780	6	FSM	ENSMUSG00000052396.8	ENSMUST00000064231.8	1780	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTCTTTTCTCTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	98887826	98868290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_98869167_98871459_98871660_98872199_98872375_98872707_98872913_98881664_98881844_98887681
ENSMUST00000064285.15	chr6	+	4782	8	FSM	ENSMUSG00000029638.18	ENSMUST00000064285.15	6200	8	0	1418	0	-1418	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAGCATGTAGTGACAAC	NA	NA	NA	NA	NA	NA	NA	NA	8509599	8596130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_8510320_8537816_8537969_8558499_8558587_8573184_8573299_8579586_8579740_8582579_8582791_8591544_8591666_8592906
ENSMUST00000064314.10	chr8	-	1256	7	FSM	ENSMUSG00000052456.10	ENSMUST00000064314.10	1256	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	672	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	NA	NA	NA	NA	NA	NA	NA	NA	85751910	85744559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746538_85750806_85750955_85751733
ENSMUST00000064334.3	chr7	-	1865	1	FSM	ENSMUSG00000030706.18	ENSMUST00000064334.3	1865	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTCTTTGTTGCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	100196827	100194962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_100195000_100196800
ENSMUST00000064364.3	chr11	-	1385	8	FSM	ENSMUSG00000020448.17	ENSMUST00000064364.3	2906	8	0	1521	0	98	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCAGCAGCAGAAACTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	3402363	3367502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3382399_3382621_3388204_3388324_3402208
ENSMUST00000064517.9	chr14	-	748	3	FSM	ENSMUSG00000052584.11	ENSMUST00000064517.9	748	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCATGTGCGAGTTACC	NA	NA	NA	NA	NA	NA	NA	NA	76794112	76770253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_76770687_76787421_76787495_76793870
ENSMUST00000064547.13	chr7	-	1080	6	FSM	ENSMUSG00000052605.13	ENSMUST00000064547.13	1080	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCGAACCATTATTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	4869192	4847957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_4848365_4852448_4852567_4853753_4853825_4854022_4854233_4854391_4854533_4869059
ENSMUST00000064664.10	chr1	+	892	5	FSM	ENSMUSG00000052688.13	ENSMUST00000064664.10	1672	5	59	721	0	200	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTTCAGGGAGAGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	131616503	131639768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_131616574_131624736_131624805_131625566_131625694_131626153_131626370_131639357
ENSMUST00000064679.9	chr1	+	1499	6	FSM	ENSMUSG00000052688.13	ENSMUST00000064679.9	4498	6	43	2956	0	-268	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGCCAAGGCTCTGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	131616475	131640221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_131616574_131624736_131624805_131625566_131625694_131626153_131626370_131633333_131633460_131639357
ENSMUST00000064701.8	chr13	+	2130	6	FSM	ENSMUSG00000021504.15	ENSMUST00000064701.8	2130	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACACTGGCAAGGAACTGG	NA	NA	NA	NA	NA	NA	NA	NA	55747877	55758255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_55748006_55751832_55752196_55755009_55755236_55756154_55756239_55756510_55756616_55757031
ENSMUST00000064709.13	chr17	+	2812	9	FSM	ENSMUSG00000052712.18	ENSMUST00000064709.13	2812	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCTACCTTCTTACTGG	NA	NA	NA	NA	NA	NA	NA	NA	29487761	29521864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUST00000064759.7	chr3	-	3215	21	FSM	ENSMUSG00000014601.14	ENSMUST00000064759.7	3215	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGCCTTGTGTGTAGA	NA	NA	NA	NA	NA	NA	NA	NA	107539010	107519847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_107520783_107521910_107522116_107522630_107522736_107523076_107523144_107523823_107523925_107524127_107524255_107525373_107525472_107525631_107525707_107526226_107526299_107527355_107527420_107527524_107527591_107528642_107528861_107529187_107529371_107531702_107531831_107531940_107532048_107532996_107533066_107534051_107534173_107534260_107534396_107534703_107534779_107535471_107535542_107538816
ENSMUST00000064786.12	chr11	-	2765	3	FSM	ENSMUSG00000049755.15	ENSMUST00000064786.12	2765	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATAGTGTCACTTCGTTG	NA	NA	NA	NA	NA	NA	NA	NA	58214172	58205939	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_58208361_58210149_58210417_58214095
ENSMUST00000064798.16	chr17	+	493	3	FSM	ENSMUSG00000024038.18	ENSMUST00000064798.16	493	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGTGGTTATTTCCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	31739088	31750305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_31739236_31740542_31740667_31750083
ENSMUST00000064831.6	chr14	+	1842	12	FSM	ENSMUSG00000095463.9	ENSMUST00000064831.6	1842	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACACTGCGTCAGCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	69585035	69603188	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_69585044_69586521_69586720_69588151_69588358_69591850_69592002_69592842_69592947_69594161_69594222_69594443_69594599_69596270_69596438_69599087_69599413_69601016_69601103_69601771_69601934_69602968
ENSMUST00000064883.14	chr8	-	2249	12	FSM	ENSMUSG00000031557.17	ENSMUST00000064883.14	5176	12	222	2705	-169	-1009	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAGAGAGAGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	25592170	25531864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25592049
ENSMUST00000064889.13	chr17	-	1988	13	FSM	ENSMUSG00000023942.16	ENSMUST00000064889.13	1988	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1089	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	45906496	45896128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
ENSMUST00000064910.7	chr6	+	2650	10	FSM	ENSMUSG00000030224.11	ENSMUST00000064910.7	2650	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	948	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGCTTGGATTCCTGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	137712075	137728930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_137712465_137713327_137713464_137716355_137716438_137716752_137716826_137718300_137718398_137718949_137719088_137722504_137722642_137725684_137725835_137726361_137726428_137727548
ENSMUST00000065049.15	chr8	-	1006	8	FSM	ENSMUSG00000052926.17	ENSMUST00000065049.15	1006	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	85692670	85684295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_85684483_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
ENSMUST00000065060.12	chr10	+	2585	4	FSM	ENSMUSG00000020023.19	ENSMUST00000065060.12	5530	4	0	2945	0	-106	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAAATGGTGGCAAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	94350718	94423873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_94350967_94414284_94415202_94418135_94418272_94422589
ENSMUST00000065080.10	chr9	-	4337	14	FSM	ENSMUSG00000032120.12	ENSMUST00000065080.10	4337	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTTGATGTATATCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	44231582	44220533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_44222565_44224802_44225089_44225174_44225309_44225451_44225554_44226176_44226352_44226443_44226572_44226660_44226726_44227402_44227512_44227602_44227715_44227807_44227925_44228004_44228116_44228296_44228417_44228879_44228976_44230831
ENSMUST00000065135.12	chr8	+	1497	4	FSM	ENSMUSG00000031851.15	ENSMUST00000065135.12	1497	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGTCTAATTAGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	126460976	126465918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126464793
ENSMUST00000065163.15	chr7	-	1047	7	FSM	ENSMUSG00000030538.16	ENSMUST00000065163.15	1047	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGGTAGCAGCAGGACT	NA	NA	NA	NA	NA	NA	NA	NA	79882561	79876894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882091_79882127_79882257
ENSMUST00000065210.10	chr10	+	462	3	FSM	ENSMUSG00000064030.16	ENSMUST00000065210.10	1156	3	73	621	0	-621	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACCTGAGGAAGAAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	128584396	128601807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_128584436_128601015_128601110_128601478
ENSMUST00000065211.9	chr11	-	3699	9	FSM	ENSMUSG00000001323.18	ENSMUST00000065211.9	3699	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACACACGATGGTAAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	74816624	74797184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74810262_74810489_74816444
ENSMUST00000065243.9	chr8	+	498	1	FSM	ENSMUSG00000053038.9	ENSMUST00000065243.9	498	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCCACCTCCAGCCCCCT	NA	NA	NA	NA	NA	NA	NA	NA	42699947	42700445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_42699900_42700400
ENSMUST00000065286.2	chr19	-	847	8	FSM	ENSMUSG00000057858.9	ENSMUST00000065286.2	2035	8	339	849	328	3	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCAGAGTTCTTCAAGAC	NA	NA	NA	NA	NA	NA	NA	NA	60214790	60187866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214663
ENSMUST00000065358.9	chr9	-	858	8	FSM	ENSMUSG00000032299.11	ENSMUST00000065358.9	858	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTATGGGTCTTGCTTGC	NA	NA	NA	NA	NA	NA	NA	NA	57065615	57062322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350_57064423_57065555
ENSMUST00000065373.6	chr1	+	491	3	FSM	ENSMUSG00000025940.7	ENSMUST00000065373.6	1710	3	26	1193	26	-1113	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCATGGGAAGCTTCACAG	NA	NA	NA	NA	NA	NA	NA	NA	16735459	16747306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_16735730_16737891_16737998_16747191
ENSMUST00000065388.11	chr5	-	1476	5	FSM	ENSMUSG00000053134.14	ENSMUST00000065388.11	2693	5	71	1146	29	-46	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGTTCAATCAGCGCT	NA	NA	NA	NA	NA	NA	NA	NA	31684046	31673053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_31673271_31675610_31675849_31677426_31677752_31679997_31680606_31683958
ENSMUST00000065418.7	chr3	+	827	8	FSM	ENSMUSG00000027935.15	ENSMUST00000065418.7	1107	8	0	280	0	-280	multi-exon	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGGGAATAAGGAGACCGG	NA	NA	NA	NA	NA	NA	NA	NA	90128093	90132996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_90128330_90129543_90129605_90130833_90130895_90131096_90131175_90131800_90131891_90132008_90132075_90132154_90132209_90132815
ENSMUST00000065422.12	chr5	+	2268	13	FSM	ENSMUSG00000033773.15	ENSMUST00000065422.12	2268	13	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTTTCAGAAGCTGACA	NA	NA	NA	NA	NA	NA	NA	NA	107745600	107809704	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_107745727_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
ENSMUST00000065482.6	chr3	-	1480	2	FSM	ENSMUSG00000053192.10	ENSMUST00000065482.6	1923	2	443	0	443	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGGGCTTAGTTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	95135545	95126445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_95127775_95135394
ENSMUST00000065494.8	chr13	+	1556	3	FSM	ENSMUSG00000048368.10	ENSMUST00000065494.8	1556	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGCTTTGTATATTCTT	NA	NA	NA	NA	NA	NA	NA	NA	49736241	49746085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_49736290_49742937_49743892_49745531
ENSMUST00000065499.5	chr15	+	1830	8	FSM	ENSMUSG00000036106.16	ENSMUST00000065499.5	1830	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTCTGCCCCCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	84565202	84587873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
ENSMUST00000065512.11	chr6	+	1820	12	FSM	ENSMUSG00000034930.17	ENSMUST00000065512.11	2191	12	0	371	0	-367	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCAGTGTGAGAGGAACC	NA	NA	NA	NA	NA	NA	NA	NA	83112792	83129189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_83113041_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
ENSMUST00000065515.14	chr16	-	1945	8	FSM	ENSMUSG00000022757.20	ENSMUST00000065515.14	1945	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTCTTGTTGCCTAAT	NA	NA	NA	NA	NA	NA	NA	NA	56537813	56510694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_56511517_56514762_56514853_56517821_56517960_56521431_56521600_56524789_56524937_56525973_56526058_56532973_56533204_56537547
ENSMUST00000065587.5	chr1	+	268	2	FSM	ENSMUSG00000044337.6	ENSMUST00000065587.5	3065	2	26	2771	26	-2771	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCGTGATCGGCATGATT	NA	NA	NA	NA	NA	NA	NA	NA	90131727	90141702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_90131810_90141516
ENSMUST00000065601.13	chr19	+	2451	15	FSM	ENSMUSG00000025217.16	ENSMUST00000065601.13	2978	15	60	467	0	253	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCATTGTCTGGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	45352249	45517985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_45352326_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ENSMUST00000065648.15	chr1	+	808	2	FSM	ENSMUSG00000050565.17	ENSMUST00000065648.15	2529	2	0	1721	0	-1514	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTACTGCCCTGAGTGTTA	NA	NA	NA	NA	NA	NA	NA	NA	155916662	155927761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_155916749_155927039
ENSMUST00000065678.6	chr4	+	332	4	FSM	ENSMUSG00000053317.12	ENSMUST00000065678.6	564	4	0	232	0	-232	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCGCTGCTGTATTTATGC	NA	NA	NA	NA	NA	NA	NA	NA	47474657	47483010	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_47474754_47474911_47475010_47480130_47480233_47482974
ENSMUST00000065793.12	chr3	-	1893	12	FSM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2902	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	NA	NA	NA	NA	NA	NA	NA	98247306	98220485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
ENSMUST00000065806.5	chrX	-	2867	1	FSM	ENSMUSG00000091736.4	ENSMUST00000065806.5	2867	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATAGCTTGCTTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	156351981	156349114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_156349100_156352000
ENSMUST00000065865.10	chr14	+	630	8	FSM	ENSMUSG00000053453.10	ENSMUST00000065865.10	937	8	17	290	8	-152	multi-exon	TRUE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCTCAAGAAAGCACCAT	NA	NA	NA	NA	NA	NA	NA	NA	8508502	8520461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_8508579_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUST00000065906.9	chr6	+	2929	15	FSM	ENSMUSG00000053460.9	ENSMUST00000065906.9	2929	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACCTGGCTTATTAATAG	NA	NA	NA	NA	NA	NA	NA	NA	72391290	72407695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_72391433_72391654_72391826_72394837_72394997_72395283_72395450_72399398_72399478_72400916_72401024_72402768_72402933_72403343_72403610_72404024_72404157_72404880_72405033_72405440_72405611_72405779_72405911_72406115_72406264_72406426_72406623_72406949
ENSMUST00000066027.14	chr16	+	1050	5	FSM	ENSMUSG00000003531.16	ENSMUST00000066027.14	1050	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGGATCCTTTCCTAGTG	NA	NA	NA	NA	NA	NA	NA	NA	17884306	17889222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_17884464_17884559_17884721_17887287_17887389_17887945_17888096_17888741
ENSMUST00000066160.3	chr5	+	2276	15	FSM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTTGTGGCTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	110987865	111022011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
ENSMUST00000066211.5	chr5	+	1182	3	FSM	ENSMUSG00000053647.5	ENSMUST00000066211.5	2537	3	0	1355	0	-1355	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGGCCTCAGTGTCCGCC	NA	NA	NA	NA	NA	NA	NA	NA	139408905	139412200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_139409110_139409415_139409628_139411434
ENSMUST00000066220.4	chr5	+	2346	1	FSM	ENSMUSG00000106943.3	ENSMUST00000066220.4	2346	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACACAAGACAGGAAAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	74253720	74256066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_74253700_74256100
ENSMUST00000066237.10	chr11	-	1922	15	FSM	ENSMUSG00000020182.17	ENSMUST00000066237.10	1922	15	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	11848044	11764100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11848007
ENSMUST00000066352.6	chr2	+	952	5	FSM	ENSMUSG00000053746.9	ENSMUST00000066352.6	952	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAAGCTTCCTGTGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	32665797	32667609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_32665908_32666315_32666536_32666718_32666819_32666994_32667041_32667133
ENSMUST00000066378.9	chr18	+	492	1	FSM	ENSMUSG00000053740.9	ENSMUST00000066378.9	492	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTGCTCCCCGCAACCAGC	NA	NA	NA	NA	NA	NA	NA	NA	14703203	14703695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_14703200_14703700
ENSMUST00000066379.11	chr6	-	1550	8	FSM	ENSMUSG00000053768.14	ENSMUST00000066379.11	1550	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGACTAAGACTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	33037195	32769151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
ENSMUST00000066401.7	chr7	-	1922	9	FSM	ENSMUSG00000007891.17	ENSMUST00000066401.7	1922	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTATTGGTGTGCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	141941594	141929653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931087_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
ENSMUST00000066469.14	chr8	+	1300	10	FSM	ENSMUSG00000055681.15	ENSMUST00000066469.14	1300	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	NA	NA	NA	NA	NA	NA	NA	NA	70755167	70765640	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
ENSMUST00000066496.10	chr11	-	2255	6	FSM	ENSMUSG00000053838.15	ENSMUST00000066496.10	3927	6	352	1320	352	-1320	multi-exon	FALSE	canonical	NA	NA	NA	NA	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCACCACCGAGTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	6150063	6057010	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_6058356_6063242_6063432_6075417_6075562_6100494_6100628_6143153_6143477_6149942
ENSMUST00000066587.12	chr11	-	3987	14	FSM	ENSMUSG00000020777.17	ENSMUST00000066587.12	3987	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGCTGTTACGTGTAGA	NA	NA	NA	NA	NA	NA	NA	NA	116089871	116062713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116089047_116089208_116089421
ENSMUST00000066587.12-0	chr11	-	3714	14	FSM	ENSMUSG00000020777.17	ENSMUST00000066587.12	3987	14	67	206	67	-206	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGAGCAGTTCTGAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	116089804	116062919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116089047_116089208_116089421
ENSMUST00000066650.12	chr9	+	1598	8	FSM	ENSMUSG00000032469.13	ENSMUST00000066650.12	2261	8	0	663	0	-663	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCCAGCAAGTGGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	99457851	99465891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_99458179_99458628_99458754_99460493_99460575_99461409_99461496_99462191_99462417_99464074_99464156_99464369_99464516_99465364
ENSMUST00000066668.14	chr1	-	2488	15	FSM	ENSMUSG00000026209.16	ENSMUST00000066668.14	2488	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGGTTTGAAATGGATTG	NA	NA	NA	NA	NA	NA	NA	NA	75294281	75284539	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293978
ENSMUST00000066701.13	chr12	+	889	6	FSM	ENSMUSG00000064215.14	ENSMUST00000066701.13	889	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCATTGTTCCCCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	103400470	103406498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_103400610_103401680_103401833_103402821_103402942_103403934_103403965_103405659_103405822_103406212
ENSMUST00000066701.13-0	chr12	+	723	6	FSM	ENSMUSG00000064215.14	ENSMUST00000066701.13	889	6	80	86	33	-54	multi-exon	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACACAGAGAAGGATTAATT	NA	NA	NA	NA	NA	NA	NA	NA	103400550	103406412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_103400610_103401680_103401833_103402821_103402942_103403934_103403965_103405659_103405822_103406212
ENSMUST00000066760.8	chr11	-	2219	11	FSM	ENSMUSG00000005204.13	ENSMUST00000066760.8	2219	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATATGCAAGTGGTGGTC	NA	NA	NA	NA	NA	NA	NA	NA	69572910	69563946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572814
ENSMUST00000066774.6	chr4	-	1374	1	FSM	ENSMUSG00000054000.6	ENSMUST00000066774.6	1374	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCATGACTGTTATTTGA	NA	NA	NA	NA	NA	NA	NA	NA	93223748	93222374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_93222400_93223700
ENSMUST00000066778.6	chr19	+	1606	9	FSM	ENSMUSG00000025178.10	ENSMUST00000066778.6	3604	9	23	1975	23	-1919	multi-exon	FALSE	canonical	NA	NA	NA	NA	266	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGAAGCACAATGGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	42078932	42108551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_42079376_42089075_42089277_42093296_42093429_42093768_42093923_42101481_42101544_42103475_42103576_42104323_42104458_42104945_42105006_42108231
ENSMUST00000066888.10	chr11	-	2613	14	FSM	ENSMUSG00000054079.13	ENSMUST00000066888.10	2613	14	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	399	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACATGCTTTGATCAAACT	NA	NA	NA	NA	NA	NA	NA	NA	93776592	93750068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_93750895_93751619_93751664_93752784_93752928_93757171_93757347_93759156_93759281_93760631_93760723_93761305_93761407_93766609_93766785_93766880_93767007_93768809_93768899_93770888_93770960_93772900_93773000_93774492_93774609_93776159
ENSMUST00000067033.8	chr15	-	2471	9	FSM	ENSMUSG00000022329.16	ENSMUST00000067033.8	2471	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAGTATTAGAAAAAGAC	NA	NA	NA	NA	NA	NA	NA	NA	35155896	34875818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35155672
ENSMUST00000067072.5	chr15	+	876	4	FSM	ENSMUSG00000054196.8	ENSMUST00000067072.5	1166	4	149	141	125	-141	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTATTATTTTTTAAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	38940475	38950375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_38940555_38943877_38944100_38947660_38947878_38950017
ENSMUST00000067102.3	chr3	+	637	2	FSM	ENSMUSG00000054215.3	ENSMUST00000067102.3	637	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATAGAAGTTTTTTTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	92339888	92341232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_92339929_92340635
ENSMUST00000067145.12	chr5	+	429	2	FSM	ENSMUSG00000118332.2	ENSMUST00000067145.12	2198	2	334	1435	294	-1435	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCTGAAGGGATCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	143534794	143548845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_143534890_143548511
ENSMUST00000067268.15	chr5	+	2662	11	FSM	ENSMUSG00000029528.20	ENSMUST00000067268.15	3706	11	35	1009	35	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGGCCCTTGACGACTTC	NA	NA	NA	NA	NA	NA	NA	NA	115644769	115693037	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_115644928_115682401_115682629_115682939_115683056_115683430_115683568_115683662_115683865_115684871_115685008_115689909_115690081_115690162_115690337_115690822_115690905_115691036_115691186_115691927
ENSMUST00000067272.9	chr12	-	590	3	FSM	ENSMUSG00000054302.16	ENSMUST00000067272.9	590	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGAAAAGGAGTGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	54742682	54720255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_54720576_54739658_54739742_54742495
ENSMUST00000067298.5	chr3	-	350	3	FSM	ENSMUSG00000054312.7	ENSMUST00000067298.5	488	3	0	138	0	-118	multi-exon	FALSE	canonical	NA	NA	NA	NA	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGTGGCTGGGCTGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	95778831	95770083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_95770245_95777805_95777928_95778764
ENSMUST00000067354.10	chr6	+	1339	2	FSM	ENSMUSG00000048489.13	ENSMUST00000067354.10	1339	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGCAATTTTGTTACTG	NA	NA	NA	NA	NA	NA	NA	NA	116627569	116629755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_116627807_116628653
ENSMUST00000067404.13	chr6	+	1030	6	FSM	ENSMUSG00000040242.15	ENSMUST00000067404.13	2766	6	62	1674	0	-1674	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACAGGGACACTGGCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	146479418	146499022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146496673_146496788_146498792
ENSMUST00000067426.6	chr14	+	723	8	FSM	ENSMUSG00000037628.11	ENSMUST00000067426.6	917	8	45	149	31	33	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAAGTTCTCCAGCATAG	NA	NA	NA	NA	NA	NA	NA	NA	46998042	47008977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_46998106_46999984_47000068_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007292_47007394_47008857
ENSMUST00000067505.15	chr5	+	1097	12	FSM	ENSMUSG00000054434.15	ENSMUST00000067505.15	2164	12	0	1067	0	-327	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAATTTTCTGACCACGCT	NA	NA	NA	NA	NA	NA	NA	NA	123214337	123254745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_123214559_123236237_123236357_123237899_123238017_123239687_123239748_123240316_123240413_123242484_123242575_123252164_123252231_123252630_123252693_123253162_123253256_123253723_123253789_123254264_123254334_123254706
ENSMUST00000067542.15	chr2	+	2244	10	FSM	ENSMUSG00000026977.18	ENSMUST00000067542.15	2244	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAAAAAAAAAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	60055112	60078301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_60055215_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
ENSMUST00000067563.9	chr15	+	1383	6	FSM	ENSMUSG00000022359.11	ENSMUST00000067563.9	1383	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTTTTGAAGAATCTG	NA	NA	NA	NA	NA	NA	NA	NA	58004772	58022050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58015992_58016142_58016975_58017101_58021297
ENSMUST00000067582.14	chr2	+	1957	14	FSM	ENSMUSG00000054484.15	ENSMUST00000067582.14	2921	14	0	964	0	-756	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCAGGTCTCATCTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	120807497	120837369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_120807960_120808179_120808292_120809611_120809750_120810953_120811000_120814814_120814957_120817063_120817189_120817316_120817440_120820811_120820968_120823958_120824119_120826886_120827001_120829554_120829640_120832977_120833083_120835162_120835282_120837299
ENSMUST00000067628.2	chr4	+	567	2	FSM	ENSMUSG00000054514.4	ENSMUST00000067628.2	971	2	18	386	-11	-386	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACGGCGGCTATTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	155845666	155846331	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_155845744_155845841
ENSMUST00000067630.13	chr3	+	1922	9	FSM	ENSMUSG00000027900.16	ENSMUST00000067630.13	3271	9	33	1316	33	-271	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCAAATACACATACACAAT	NA	NA	NA	NA	NA	NA	NA	NA	106455146	106481890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ENSMUST00000067631.7	chr2	-	1592	2	FSM	ENSMUSG00000049922.9	ENSMUST00000067631.7	3139	2	641	906	641	-903	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACTGACACCTCCACAC	NA	NA	NA	NA	NA	NA	NA	NA	92289498	92284014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_92285120_92289011
ENSMUST00000067646.12	chr9	+	3549	20	FSM	ENSMUSG00000032178.15	ENSMUST00000067646.12	3549	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCCTGTCTCAGGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	21279166	21316656	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
ENSMUST00000067663.14	chr2	+	1636	12	FSM	ENSMUSG00000002102.16	ENSMUST00000067663.14	1636	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAGTCTTTCTCAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	90884353	90889777	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
ENSMUST00000067663.14-0	chr2	+	1367	12	FSM	ENSMUSG00000002102.16	ENSMUST00000067663.14	1636	12	269	0	178	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	990	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAGTCTTTCTCAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	90884622	90889777	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
ENSMUST00000067743.2	chr18	+	962	2	FSM	ENSMUSG00000054589.2	ENSMUST00000067743.2	962	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGACTAAATATTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	62313196	62317476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_62313675_62316992
ENSMUST00000067744.8	chr16	+	1977	3	FSM	ENSMUSG00000054604.8	ENSMUST00000067744.8	4425	3	0	2448	0	-2438	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTTTAAAACTTGGATGC	NA	NA	NA	NA	NA	NA	NA	NA	64672358	64677422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_64672600_64673161_64673389_64675913
ENSMUST00000067752.5	chr15	+	1946	2	FSM	ENSMUSG00000054619.8	ENSMUST00000067752.5	1946	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTGCATTTGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	100202641	100212236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_100203226_100210874
ENSMUST00000067763.10	chrX	-	1032	8	FSM	ENSMUSG00000054626.12	ENSMUST00000067763.10	1032	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	52799663	52785714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798236_52799598
ENSMUST00000067821.13	chr13	+	2743	14	FSM	ENSMUSG00000021470.20	ENSMUST00000067821.13	2743	14	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAACTCTCCACTATGT	NA	NA	NA	NA	NA	NA	NA	NA	63963116	64017469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_63963332_63967444_63967870_63972622_63972743_63982409_63982604_63989237_63989400_63989775_63989984_63992359_63992501_63995154_63995269_63996554_63996675_64000764_64000837_64001441_64001588_64006044_64006141_64013771_64013872_64016839
ENSMUST00000067853.6	chr5	-	2242	2	FSM	ENSMUSG00000054675.6	ENSMUST00000067853.6	2242	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2382	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTCTGGATTATCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	113938577	113931789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_113933815_113938360
ENSMUST00000067902.13	chr4	-	990	3	FSM	ENSMUSG00000043257.16	ENSMUST00000067902.13	990	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTCTGTCTTCTTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	133399958	133389564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_133390103_133397048_133397172_133399629
ENSMUST00000067924.13	chr5	+	1700	4	FSM	ENSMUSG00000054720.13	ENSMUST00000067924.13	6976	4	85	5191	85	-5191	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAGAATCTCAAGGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	105667338	105755693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_105667497_105692065_105692137_105727333_105727476_105754364
ENSMUST00000067925.8	chr8	+	2628	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	850	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGATGTTCTGTTTTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	57964940	57969033	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
ENSMUST00000067955.12	chr14	-	606	3	FSM	ENSMUSG00000021905.15	ENSMUST00000067955.12	2953	3	158	2189	158	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCAGGAGTCCCAGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	31807408	31804714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_31805204_31806863_31806939_31807366
ENSMUST00000067996.7	chr2	+	1686	8	FSM	ENSMUSG00000054766.14	ENSMUST00000067996.7	2834	8	0	1148	0	829	multi-exon	FALSE	canonical	NA	NA	NA	NA	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGGTATAGACGGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	29956467	29961441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_29956906_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
ENSMUST00000068054.9	chr6	-	1714	10	FSM	ENSMUSG00000006906.11	ENSMUST00000068054.9	2364	10	296	354	0	184	multi-exon	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTTTAAGACAAATGTG	NA	NA	NA	NA	NA	NA	NA	NA	83549415	83520559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_83521019_83524212_83524313_83528925_83529039_83533256_83533395_83534418_83534544_83538656_83539024_83540804_83540901_83541162_83541239_83547284_83547502_83549392
ENSMUST00000068056.12	chr17	+	1739	11	FSM	ENSMUSG00000019432.16	ENSMUST00000068056.12	1739	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTCTGTTCATGGCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	35460721	35472683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
ENSMUST00000068088.8	chr15	+	1590	4	FSM	ENSMUSG00000054863.10	ENSMUST00000068088.8	2603	4	0	1013	0	-1011	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTGAGAGTTGTGGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	87509430	87642552	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_87509688_87565680_87565831_87604702_87604831_87641497
ENSMUST00000068116.13	chr1	+	2050	13	FSM	ENSMUSG00000026305.16	ENSMUST00000068116.13	2050	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTGTGTGGGTTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	90926500	91056662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_90926616_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
ENSMUST00000068125.11	chr4	-	5383	8	FSM	ENSMUSG00000028411.16	ENSMUST00000068125.11	5383	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTAGTGTCATGCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	40702914	40682381	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695424_40697216_40697354_40702723
ENSMUST00000068225.15	chr2	+	1403	11	FSM	ENSMUSG00000027306.16	ENSMUST00000068225.15	2960	11	431	1126	12	-1126	multi-exon	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTCTTTCTCTACTTCA	NA	NA	NA	NA	NA	NA	NA	NA	119449209	119479515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119464200_119464300_119465958_119466069_119468928_119469045_119470057_119470216_119474264_119474382_119477570_119477680_119479373
ENSMUST00000068261.9	chr17	+	1528	3	FSM	ENSMUSG00000024403.17	ENSMUST00000068261.9	1528	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGGTGAAAGCAGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	35455537	35457743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35455822_35456092_35456194_35456600
ENSMUST00000068271.5	chr2	+	1109	6	FSM	ENSMUSG00000026817.15	ENSMUST00000068271.5	2034	6	17	908	17	-908	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTTTTCTTTCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	32519532	32524156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_32519629_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ENSMUST00000068322.7	chr11	+	1600	12	FSM	ENSMUSG00000054986.14	ENSMUST00000068322.7	2686	12	111	975	22	14	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAGGACCAGAAGTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	4014951	4026761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_4015006_4016136_4016213_4016459_4016504_4016639_4016700_4017955_4018145_4019254_4019351_4020083_4020145_4021408_4021496_4024719_4024827_4025165_4025306_4025391_4025562_4026245
ENSMUST00000068407.6	chr15	+	125	2	FSM	ENSMUSG00000055041.9	ENSMUST00000068407.6	1037	2	26	886	0	-772	multi-exon	TRUE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGGCTCCATACTTACA	NA	NA	NA	NA	NA	NA	NA	NA	76784135	76784619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76784193_76784551
ENSMUST00000068408.14	chr10	+	500	4	FSM	ENSMUSG00000063457.15	ENSMUST00000068408.14	500	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	535	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGGTTTTTGTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	80128286	80129948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80128318_80128608_80128695_80129475_80129711_80129800
ENSMUST00000068487.12	chr6	-	2577	14	FSM	ENSMUSG00000030254.17	ENSMUST00000068487.12	2577	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGCAATGTGTAATGTC	NA	NA	NA	NA	NA	NA	NA	NA	112673631	112596935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_112597866_112605422_112605486_112621548_112621709_112626555_112626799_112641056_112641135_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ENSMUST00000068505.10	chr1	-	3225	21	FSM	ENSMUSG00000026509.16	ENSMUST00000068505.10	3225	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	706	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGCACCATGCCTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	182345089	182294824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_182295801_182297743_182297803_182298243_182298361_182300085_182300165_182300488_182300558_182301446_182301512_182304815_182304874_182306112_182306179_182307270_182307308_182309011_182309224_182310100_182310113_182311767_182311938_182314108_182314270_182315279_182315355_182316558_182316645_182317529_182317614_182318431_182318601_182319626_182319761_182320316_182320436_182339771_182339842_182344682
ENSMUST00000068532.10	chr14	+	1324	6	FSM	ENSMUSG00000055128.16	ENSMUST00000068532.10	1324	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGACACTGTCTTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	47069581	47091650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_47069837_47077613_47077754_47083330_47083509_47083641_47083790_47090835_47090944_47091155
ENSMUST00000068581.9	chr10	+	772	2	FSM	ENSMUSG00000050953.11	ENSMUST00000068581.9	3071	2	2	2297	2	-2289	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCCCCACCAGGTGGACT	NA	NA	NA	NA	NA	NA	NA	NA	56253427	56264214	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_56253615_56263629
ENSMUST00000068613.5	chr1	+	1790	4	FSM	ENSMUSG00000055184.5	ENSMUST00000068613.5	2191	4	0	401	0	-401	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGATCCGGGTAAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	131455640	131467209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_131456591_131458391_131458470_131461546_131461672_131466572
ENSMUST00000068641.8	chr7	+	940	2	FSM	ENSMUSG00000055200.8	ENSMUST00000068641.8	1329	2	0	389	0	-389	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTAGATTCCTCGCTTACA	NA	NA	NA	NA	NA	NA	NA	NA	27173192	27176400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_27173297_27175564
ENSMUST00000068755.14	chrX	+	2823	5	FSM	ENSMUSG00000072964.15	ENSMUST00000068755.14	2823	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGTTTGTGTATATGA	NA	NA	NA	NA	NA	NA	NA	NA	134786601	134791830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_134786847_134787593_134787676_134788009_134788067_134789120_134789229_134789499
ENSMUST00000068798.13	chr3	+	1500	6	FSM	ENSMUSG00000027942.18	ENSMUST00000068798.13	1500	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGATCATTTCTTTAGA	NA	NA	NA	NA	NA	NA	NA	NA	89960177	89969749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89965791_89965959_89966048_89966108_89968944
ENSMUST00000068825.8	chr5	+	1917	15	FSM	ENSMUSG00000028954.12	ENSMUST00000068825.8	3269	15	0	1352	0	-1350	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTGTCAACGAAATCCT	NA	NA	NA	NA	NA	NA	NA	NA	24890821	24914024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ENSMUST00000068916.16	chr8	+	1065	7	FSM	ENSMUSG00000031570.18	ENSMUST00000068916.16	1483	7	51	367	24	-367	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAACCTTTCCACAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	26210114	26214547	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
ENSMUST00000068958.9	chr17	-	2265	2	FSM	ENSMUSG00000036533.10	ENSMUST00000068958.9	2265	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1541	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGAACGTGTTCATTTA	NA	NA	NA	NA	NA	NA	NA	NA	79662520	79641155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_79643146_79662245
ENSMUST00000069011.9	chr14	+	1094	2	FSM	ENSMUSG00000072115.12	ENSMUST00000069011.9	1094	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGAGTCAGTCTGGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	51333456	51339462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_51333931_51338842
ENSMUST00000069036.14	chr9	-	1223	3	FSM	ENSMUSG00000032575.17	ENSMUST00000069036.14	960	3	251	-514	251	514	multi-exon	FALSE	canonical	NA	NA	NA	NA	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGGCACTTGTGAACTG	NA	NA	NA	NA	NA	NA	NA	NA	106768363	106765437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_106766425_106767359_106767502_106768269
ENSMUST00000069041.15	chrX	+	1090	6	FSM	ENSMUSG00000031367.16	ENSMUST00000069041.15	2226	6	128	1008	0	-701	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATATACTTTAAATCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	162692140	162715654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162714358_162714368_162715128
ENSMUST00000069064.7	chr16	+	658	5	FSM	ENSMUSG00000041774.17	ENSMUST00000069064.7	1297	5	4	635	4	-635	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTTGGGGTCACTGGCG	NA	NA	NA	NA	NA	NA	NA	NA	16964846	16966075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_16965011_16965096_16965257_16965461_16965562_16965660_16965839_16966019
ENSMUST00000069107.14	chr16	+	1267	9	FSM	ENSMUSG00000063358.18	ENSMUST00000069107.14	5099	9	185	3647	0	-943	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTTTCTGGTAGTAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	16801430	16861670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_16801604_16833761_16833945_16836149_16836340_16841315_16841433_16843889_16844005_16844221_16844354_16853305_16853416_16856177_16856304_16861549
ENSMUST00000069324.7	chr7	+	347	2	FSM	ENSMUSG00000055633.7	ENSMUST00000069324.7	1096	2	0	749	0	-361	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCTCATCGACGCCAACG	NA	NA	NA	NA	NA	NA	NA	NA	5054536	5055973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_5054714_5055803
ENSMUST00000069449.7	chr7	-	2275	6	FSM	ENSMUSG00000055723.7	ENSMUST00000069449.7	2275	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	496	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACGCTTGACGGCTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	113717016	113646016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_113647487_113649535_113649655_113657774_113657884_113658161_113658265_113659566_113659655_113716630
ENSMUST00000069486.13	chr17	+	875	3	FSM	ENSMUSG00000055760.13	ENSMUST00000069486.13	1134	3	0	259	0	-259	multi-exon	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTTTTGTTCAGATCAGA	NA	NA	NA	NA	NA	NA	NA	NA	80531869	80535667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_80532100_80533049_80533194_80535166
ENSMUST00000069503.13	chr11	+	1871	9	FSM	ENSMUSG00000020513.16	ENSMUST00000069503.13	1871	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTCAGTCTGTTAAGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	86435816	86458186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_86436057_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510_86456695_86457862
ENSMUST00000069529.3	chr18	-	370	1	FSM	ENSMUSG00000055771.3	ENSMUST00000069529.3	370	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGACTAAAACTCACCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	30628426	30628056	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_30628100_30628400
ENSMUST00000069562.6	chr7	-	855	1	FSM	ENSMUSG00000055826.6	ENSMUST00000069562.6	855	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGAGCGGGGCGTGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	24033361	24032506	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_24032500_24033400
ENSMUST00000069579.7	chr17	-	537	4	FSM	ENSMUSG00000055839.7	ENSMUST00000069579.7	537	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3852	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTTCTCATTTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	24048110	24043711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_24043954_24046441_24046548_24047817_24047953_24048056
ENSMUST00000069595.13	chr6	-	1191	4	FSM	ENSMUSG00000055850.13	ENSMUST00000069595.13	1191	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	72339376	72336696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72339299
ENSMUST00000069604.15	chr4	+	2116	12	FSM	ENSMUSG00000029009.18	ENSMUST00000069604.15	6072	12	0	3956	0	1	multi-exon	TRUE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTCAACAGGCACACCAT	NA	NA	NA	NA	NA	NA	NA	NA	148125647	148140052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_148125779_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
ENSMUST00000069722.13	chrX	+	1851	10	FSM	ENSMUSG00000009995.18	ENSMUST00000069722.13	1851	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTCTTCTGTGTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	73326302	73333757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332267_73332321_73332710_73332789_73332904
ENSMUST00000069747.6	chr2	+	3991	5	FSM	ENSMUSG00000055943.6	ENSMUST00000069747.6	5826	5	0	1835	0	-1835	multi-exon	FALSE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAAGTAGGAACCAAATGG	NA	NA	NA	NA	NA	NA	NA	NA	112285341	112300672	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_112285646_112289804_112289925_112293145_112293285_112295081_112295163_112297325
ENSMUST00000069792.14	chr1	-	3874	8	FSM	ENSMUSG00000002881.15	ENSMUST00000069792.14	3874	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGCTTAGAGTGCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	52539838	52496452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_52498466_52501246_52501364_52503943_52504107_52506048_52506139_52518396_52518449_52520029_52520164_52529079_52529915_52539368
ENSMUST00000069968.13	chr13	-	1006	8	FSM	ENSMUSG00000021493.16	ENSMUST00000069968.13	1006	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCCTCTGTCTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	55661251	55654585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_55654937_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
ENSMUST00000069994.11	chr6	+	1765	7	FSM	ENSMUSG00000056091.13	ENSMUST00000069994.11	2258	7	31	462	0	119	multi-exon	FALSE	canonical	NA	NA	NA	NA	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTTCCTGCCTCCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	72074606	72131093	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_72074767_72105247_72105372_72109035_72109148_72119123_72119468_72124052_72124240_72126002_72126162_72130414
ENSMUST00000070112.6	chr2	-	861	4	FSM	ENSMUSG00000026895.8	ENSMUST00000070112.6	861	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1771	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGTGTTTTATTATGCT	NA	NA	NA	NA	NA	NA	NA	NA	35939418	35926337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_35926654_35929723_35929890_35934361_35934526_35939203
ENSMUST00000070117.8	chr9	-	2853	20	FSM	ENSMUSG00000056167.9	ENSMUST00000070117.8	2853	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGATATGTTGCATGGTG	NA	NA	NA	NA	NA	NA	NA	NA	114469142	114414945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114426862_114426899_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ENSMUST00000070118.14	chr19	+	1781	10	FSM	ENSMUSG00000024909.16	ENSMUST00000070118.14	1781	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCTGAGGTGGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	5524777	5531881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
ENSMUST00000070124.5	chr13	+	393	1	FSM	ENSMUSG00000071516.3	ENSMUST00000070124.5	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	643	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCAAACATTACGAATCAC	NA	NA	NA	NA	NA	NA	NA	NA	21900591	21900984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_21900600_21901000
ENSMUST00000070198.14	chr3	+	2312	13	FSM	ENSMUSG00000028161.18	ENSMUST00000070198.14	4758	13	646	1800	0	146	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTACCTCAGGTTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	136376530	136641688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_136376663_136503486_136503688_136574362_136574488_136581849_136581962_136583390_136583537_136587161_136587302_136593707_136593786_136596196_136596292_136608863_136608990_136611059_136611135_136627593_136627679_136634282_136634381_136640789
ENSMUST00000070219.9	chr18	+	2236	3	FSM	ENSMUSG00000056214.10	ENSMUST00000070219.9	3147	3	0	911	0	-911	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATAGCGATCCGTGGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	80090104	80161943	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_80090358_80123039_80123263_80160183
ENSMUST00000070395.9	chr11	-	1516	12	FSM	ENSMUSG00000075528.14	ENSMUST00000070395.9	1516	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTGTATACTGCCATT	NA	NA	NA	NA	NA	NA	NA	NA	101308441	101297664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_101297851_101298956_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302026_101302119_101302277_101302765_101302824_101304762_101304923_101307928_101308061_101308175
ENSMUST00000070487.12	chr5	+	1606	7	FSM	ENSMUSG00000029625.17	ENSMUST00000070487.12	1606	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTTTCATTACTTAA	NA	NA	NA	NA	NA	NA	NA	NA	145104033	145118851	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112920_145113015_145114039_145114113_145115645_145115739_145117945
ENSMUST00000070502.2	chr3	+	2034	1	FSM	ENSMUSG00000056411.3	ENSMUST00000186471.2	2428	1	392	2	392	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCACTGTTTTGACTC	NA	NA	NA	NA	NA	NA	NA	NA	107993291	107995325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_107993300_107995300
ENSMUST00000070532.8	chr4	+	823	4	FSM	ENSMUSG00000028773.9	ENSMUST00000070532.8	823	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTTGGTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	130202387	130209256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_130202644_130206083_130206257_130207746_130207849_130208964
ENSMUST00000070552.14	chr11	-	4097	14	FSM	ENSMUSG00000020435.18	ENSMUST00000070552.14	4097	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTTGCAGAGTCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	3813903	3653730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3655208_3655388_3655616_3661693_3661870_3661957_3662054_3662125_3662230_3662458_3662580_3664470_3664717_3665087_3665235_3665496_3665552_3667096_3667215_3667793_3667987_3676318_3676576_3769836_3770046_3813232
ENSMUST00000070642.4	chr2	+	1504	1	FSM	ENSMUSG00000056501.4	ENSMUST00000070642.4	1504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	360	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGGGGCAGTAGTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	167530834	167532338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_167530800_167532300
ENSMUST00000070656.12	chr7	+	3026	10	FSM	ENSMUSG00000030782.18	ENSMUST00000070656.12	3026	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGCCAGAGAACCTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	127846042	127852884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_127847465_127847591_127847645_127847749_127847893_127848058_127848147_127848261_127848368_127848471_127848667_127851248_127851423_127851649_127851732_127851955_127852105_127852270
ENSMUST00000070656.12-0	chr7	+	1716	10	FSM	ENSMUSG00000030782.18	ENSMUST00000070656.12	3026	10	1305	5	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTACAGTGCCAGAGAACC	NA	NA	NA	NA	NA	NA	NA	NA	127847347	127852879	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_127847465_127847591_127847645_127847749_127847893_127848058_127848147_127848261_127848368_127848471_127848667_127851248_127851423_127851649_127851732_127851955_127852105_127852270
ENSMUST00000070681.7	chr11	+	2687	6	FSM	ENSMUSG00000018415.15	ENSMUST00000070681.7	4283	6	0	1596	0	-1596	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTCCTTACCCTTGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	60308087	60334507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_60308671_60315599_60315660_60323158_60323267_60327173_60327276_60329268_60329400_60332804
ENSMUST00000070777.13	chr17	-	2384	19	FSM	ENSMUSG00000052752.16	ENSMUST00000070777.13	2384	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	24738182	24727823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731929_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24735478_24735574_24737715_24737774_24738104
ENSMUST00000070801.11	chrX	+	1802	4	FSM	ENSMUSG00000041718.17	ENSMUST00000070801.11	1802	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGCTGTTACTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	143100799	143108193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_143101118_143102894_143103058_143105007_143105147_143107011
ENSMUST00000070816.9	chr4	-	2177	5	FSM	ENSMUSG00000028539.15	ENSMUST00000070816.9	2177	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTTTGTCAGATCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	117786960	117783358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_117784266_117784357_117784497_117784820_117785340_117786215_117786450_117786582
ENSMUST00000070877.7	chr15	+	2577	5	FSM	ENSMUSG00000022244.8	ENSMUST00000070877.7	2577	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	793	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAATCACCAATGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	10981841	10996712	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_10982140_10983435_10983580_10984771_10984933_10988844_10989032_10994925
ENSMUST00000070878.9	chr19	-	642	6	FSM	ENSMUSG00000056629.17	ENSMUST00000070878.9	642	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTGAGTCTGTATTTCT	NA	NA	NA	NA	NA	NA	NA	NA	6957808	6955108	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956546_6957761
ENSMUST00000070890.6	chr6	-	1653	3	FSM	ENSMUSG00000056643.6	ENSMUST00000070890.6	1653	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGGGGGCTTCTCTACT	NA	NA	NA	NA	NA	NA	NA	NA	90302167	90285330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_90286790_90295240_90295324_90302056
ENSMUST00000070918.14	chr15	+	1155	6	FSM	ENSMUSG00000022235.16	ENSMUST00000070918.14	1155	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGCGTAGCTTCACTTT	NA	NA	NA	NA	NA	NA	NA	NA	31568943	31590265	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_31569086_31581985_31582220_31584110_31584219_31585440_31585584_31588313_31588406_31589829
ENSMUST00000070951.8	chr13	+	1272	6	FSM	ENSMUSG00000021759.15	ENSMUST00000070951.8	1272	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGTACAGACCATTCTATA	NA	NA	NA	NA	NA	NA	NA	NA	112937396	113004176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_112937801_112987936_112988089_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUST00000070996.11	chr11	-	1373	7	FSM	ENSMUSG00000078812.11	ENSMUST00000070996.11	1373	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	69812212	69807545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69810274_69810305_69811988
ENSMUST00000071026.10	chr11	-	1286	7	FSM	ENSMUSG00000078812.11	ENSMUST00000071026.10	1286	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	69812784	69807545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69810274_69810305_69812647
ENSMUST00000071044.13	chr6	+	1247	10	FSM	ENSMUSG00000056737.15	ENSMUST00000071044.13	1247	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	72521373	72539966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_72521450_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
ENSMUST00000071067.4	chr8	-	1849	2	FSM	ENSMUSG00000056753.4	ENSMUST00000071067.4	1849	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACAGGCCCTGTAGTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	84793916	84791864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_84793433_84793635
ENSMUST00000071081.13	chr5	+	1311	8	FSM	ENSMUSG00000029152.14	ENSMUST00000071081.13	1311	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGGCTTTGTTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	73450126	73471300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464142_73470785
ENSMUST00000071108.14	chr4	-	2674	8	FSM	ENSMUSG00000028799.16	ENSMUST00000071108.14	2674	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAGAAAAGAGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	128688681	128666896	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_128668431_128670876_128671036_128671160_128671240_128679762_128679988_128680685_128681014_128683656_128683904_128684042_128684107_128688643
ENSMUST00000071130.5	chr5	+	1251	5	FSM	ENSMUSG00000060063.10	ENSMUST00000071130.5	1251	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	274	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGAGTCTTTTATTGAC	NA	NA	NA	NA	NA	NA	NA	NA	149201576	149224963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_149201993_149209190_149209291_149215985_149216057_149222153_149222236_149224381
ENSMUST00000071134.4	chr8	+	1546	4	FSM	ENSMUSG00000062380.5	ENSMUST00000071134.4	1868	4	0	322	0	-322	multi-exon	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGGGTGTGGGGCCAAGT	NA	NA	NA	NA	NA	NA	NA	NA	124138162	124148432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_124138402_124144831_124144941_124145678_124145790_124147345
ENSMUST00000071134.4-1	chr8	+	1532	4	FSM	ENSMUSG00000062380.5	ENSMUST00000071134.4	1868	4	166	170	0	-170	multi-exon	FALSE	canonical	NA	NA	NA	NA	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTCCATGTGAGTCCACT	NA	NA	NA	NA	NA	NA	NA	NA	124138328	124148584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_124138402_124144831_124144941_124145678_124145790_124147345
ENSMUST00000071172.7	chr9	-	760	1	FSM	ENSMUSG00000099980.2	ENSMUST00000071172.7	760	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	323	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAAATGAATACTCCTAAG	NA	NA	NA	NA	NA	NA	NA	NA	85664680	85663920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_85663900_85664700
ENSMUST00000071215.5	chr14	+	616	3	FSM	ENSMUSG00000063787.5	ENSMUST00000071215.5	616	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCATTTCTTCTAATT	NA	NA	NA	NA	NA	NA	NA	NA	20753073	20754493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_20753266_20753357_20753477_20754188
ENSMUST00000071237.7	chr3	-	480	1	FSM	ENSMUSG00000105359.2	ENSMUST00000071237.7	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGTACACAAAGAAATAA	NA	NA	NA	NA	NA	NA	NA	NA	38162071	38161591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_38161600_38162100
ENSMUST00000071263.7	chr5	+	1661	1	FSM	ENSMUSG00000061118.9	ENSMUST00000071263.7	1661	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	449	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTGAGTGTGGTCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	135093055	135094716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_135093100_135094700
ENSMUST00000071280.8	chr3	-	1777	6	FSM	ENSMUSG00000040374.14	ENSMUST00000071280.8	1777	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGATGATTGTGCATTTAT	NA	NA	NA	NA	NA	NA	NA	NA	5641188	5625563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5635546_5635690_5641097
ENSMUST00000071361.13	chr7	+	718	3	FSM	ENSMUSG00000064264.15	ENSMUST00000071361.13	1182	3	60	404	0	-402	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGTACCCCACCTTGCCG	NA	NA	NA	NA	NA	NA	NA	NA	24206554	24214703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_24206862_24209970_24210179_24214500
ENSMUST00000071442.12	chr2	+	1485	9	FSM	ENSMUSG00000015094.17	ENSMUST00000071442.12	1485	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTTCTGGGTTCACTGA	NA	NA	NA	NA	NA	NA	NA	NA	25293082	25299506	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_25293378_25296226_25296374_25297607_25297749_25297852_25298027_25298125_25298193_25298271_25298360_25298618_25298699_25298916_25299014_25299110
ENSMUST00000071458.5	chr6	+	858	1	FSM	ENSMUSG00000062365.5	ENSMUST00000071458.5	858	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGTTTGCACAAGAAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	127210724	127211582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_127210700_127211600
ENSMUST00000071492.9	chr6	+	1643	3	FSM	ENSMUSG00000057497.9	ENSMUST00000071492.9	1643	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	597	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTCTTATGGGTAGTG	NA	NA	NA	NA	NA	NA	NA	NA	86342627	86347040	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_86342802_86343591_86343733_86345712
ENSMUST00000071515.3	chrX	-	387	1	FSM	ENSMUSG00000063442.6	ENSMUST00000071515.3	387	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAACAAGAAAATATTT	NA	NA	NA	NA	NA	NA	NA	NA	104769120	104768733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_104768700_104769100
ENSMUST00000071544.11	chr4	+	942	6	FSM	ENSMUSG00000028483.14	ENSMUST00000071544.11	942	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTCTAGTCCCCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	83335967	83360323	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123
ENSMUST00000071564.14	chr2	-	3567	21	FSM	ENSMUSG00000058594.16	ENSMUST00000071564.14	3567	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCAGTACTGTCATTT	NA	NA	NA	NA	NA	NA	NA	NA	11782393	11747385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782242
ENSMUST00000071792.7	chr15	+	1043	5	FSM	ENSMUSG00000063236.7	ENSMUST00000071792.7	1043	5	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGGATGGTGTGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	76832705	76834929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76832745_76832828_76833120_76833267_76833353_76833743_76833891_76834448
ENSMUST00000071881.10	chr5	+	952	4	FSM	ENSMUSG00000036639.13	ENSMUST00000071881.10	952	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	NA	NA	NA	NA	NA	NA	NA	140317614	140323892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_140317711_140320209_140320375_140321067_140321214_140323347
ENSMUST00000071926.5	chr13	+	1380	8	FSM	ENSMUSG00000063200.5	ENSMUST00000071926.5	1800	8	2	418	0	-418	multi-exon	FALSE	canonical	NA	NA	NA	NA	313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGAGCAATCTTGCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	43551867	43555919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_43552135_43552210_43552272_43552986_43553046_43554068_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
ENSMUST00000071949.5	chr5	-	1273	1	FSM	ENSMUSG00000060708.5	ENSMUST00000071949.5	1273	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	361	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTTCCTTCTGGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	36905994	36904721	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_36904700_36906000
ENSMUST00000071951.14	chr17	+	1497	7	FSM	ENSMUSG00000060550.17	ENSMUST00000071951.14	1497	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAAATAAATGGCA	NA	NA	NA	NA	NA	NA	NA	NA	35658130	35662710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35658261_35658427_35658698_35658884_35659161_35661242_35661528_35661653_35661771_35661942_35661976_35662324
ENSMUST00000071977.9	chr4	+	1073	9	FSM	ENSMUSG00000060572.18	ENSMUST00000071977.9	1073	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCGTCCAGGGACAGC	NA	NA	NA	NA	NA	NA	NA	NA	140737954	140743295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_140738033_140740136_140740213_140741083_140741171_140741366_140741394_140741499_140741581_140741705_140741760_140742293_140742382_140742525_140742600_140742787
ENSMUST00000072079.9	chr1	+	2048	1	FSM	ENSMUSG00000061024.9	ENSMUST00000072079.9	2048	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	833	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTGCATTATTTTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	9615632	9617680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_9615600_9617700
ENSMUST00000072119.15	chr13	-	2489	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGGTCGGCCAACTCCC	NA	NA	NA	NA	NA	NA	NA	NA	100923078	100915157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
ENSMUST00000072155.5	chr7	-	2536	9	FSM	ENSMUSG00000057176.5	ENSMUST00000072155.5	2536	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCATGCGTAGCATCAGG	NA	NA	NA	NA	NA	NA	NA	NA	127187767	127181554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_127182762_127183992_127184086_127184164_127184226_127184316_127184434_127184625_127184697_127185446_127185617_127185994_127186061_127186735_127186768_127187048
ENSMUST00000072298.13	chr2	-	2586	16	FSM	ENSMUSG00000027634.15	ENSMUST00000072298.13	2586	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	156833976	156769264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
ENSMUST00000072329.15	chr13	-	1362	10	FSM	ENSMUSG00000057531.15	ENSMUST00000072329.15	1362	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGCAGCTGGTGAGTA	NA	NA	NA	NA	NA	NA	NA	NA	45155623	45075554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_45075931_45076624_45076769_45084471_45084628_45106647_45106671_45123521_45123655_45136216_45136350_45139510_45139572_45145494_45145546_45147160_45147215_45155392
ENSMUST00000072334.12	chr2	+	698	5	FSM	ENSMUSG00000000826.17	ENSMUST00000072334.12	6578	5	66	5814	0	-271	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCAGCTGACAGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	181162343	181191112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_181162491_181188163_181188282_181189132_181189347_181190462_181190635_181191065
ENSMUST00000072376.13	chr18	+	1720	9	FSM	ENSMUSG00000060450.15	ENSMUST00000072376.13	3040	9	71	1249	6	-214	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGACGACTAGTTCATTCC	NA	NA	NA	NA	NA	NA	NA	NA	38429758	38449653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ENSMUST00000072406.5	chr17	-	3255	14	FSM	ENSMUSG00000024127.16	ENSMUST00000072406.5	3255	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAATTTTCTTCGTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	85397649	85370897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85397533
ENSMUST00000072452.11	chr2	+	1606	4	FSM	ENSMUSG00000045503.17	ENSMUST00000072452.11	1606	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTTTGGCTTGTACTTA	NA	NA	NA	NA	NA	NA	NA	NA	164302890	164307428	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_164303041_164303212_164303450_164305220_164305289_164306277
ENSMUST00000072465.9	chr9	+	1425	6	FSM	ENSMUSG00000057982.9	ENSMUST00000072465.9	1425	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCCTTGGTTGTGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	22137066	22154650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837_22150550_22154329
ENSMUST00000072503.13	chr7	+	679	6	FSM	ENSMUSG00000059070.17	ENSMUST00000072503.13	679	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTGTGTTCATTCATGAA	NA	NA	NA	NA	NA	NA	NA	NA	45367494	45370259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
ENSMUST00000072503.13-0	chr7	+	629	6	FSM	ENSMUSG00000059070.17	ENSMUST00000072503.13	679	6	0	50	0	-38	multi-exon	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACCCTGGATCTTAACTG	NA	NA	NA	NA	NA	NA	NA	NA	45367494	45370209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
ENSMUST00000072514.3	chr7	+	1047	3	FSM	ENSMUSG00000009471.5	ENSMUST00000072514.3	1861	3	0	814	0	-814	multi-exon	FALSE	canonical	NA	NA	NA	NA	332	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGCATCCCTAAGCGACA	NA	NA	NA	NA	NA	NA	NA	NA	46025897	46027709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_46026724_46027163_46027243_46027567
ENSMUST00000072576.10	chr18	+	370	5	FSM	ENSMUSG00000014504.17	ENSMUST00000072576.10	876	5	31	475	18	-268	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATGATACCCAAGCTAAA	NA	NA	NA	NA	NA	NA	NA	NA	34464228	34469177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_34464313_34464802_34464879_34467345_34467418_34467509_34467622_34469151
ENSMUST00000072581.9	chr11	+	1311	11	FSM	ENSMUSG00000023170.15	ENSMUST00000072581.9	1311	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTACCCACCATCATG	NA	NA	NA	NA	NA	NA	NA	NA	69804713	69807402	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69804901_69805098_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
ENSMUST00000072585.8	chr9	-	1920	12	FSM	ENSMUSG00000056131.14	ENSMUST00000072585.8	1920	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTTTCGATTGCTTACC	NA	NA	NA	NA	NA	NA	NA	NA	86453881	86437053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_86437457_86438244_86438419_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
ENSMUST00000072587.5	chr3	-	405	2	FSM	ENSMUSG00000054312.7	ENSMUST00000072587.5	405	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAAGGCTTGGACATA	NA	NA	NA	NA	NA	NA	NA	NA	95777931	95769965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_95770245_95777805
ENSMUST00000072634.15	chr9	-	3634	17	FSM	ENSMUSG00000031996.18	ENSMUST00000072634.15	3634	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	NA	NA	NA	NA	NA	NA	NA	NA	31123087	31060852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
ENSMUST00000072699.13	chrX	+	596	5	FSM	ENSMUSG00000015217.12	ENSMUST00000072699.13	1571	5	72	903	0	-903	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGAGGAGGAAGAGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	70599595	70603379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_70599615_70601658_70601814_70602038_70602179_70602703_70602879_70603272
ENSMUST00000072739.6	chr10	+	309	1	FSM	ENSMUSG00000064317.6	ENSMUST00000072739.6	309	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCAGCAAAGGAGAGCGGT	NA	NA	NA	NA	NA	NA	NA	NA	78229153	78229462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_78229200_78229500
ENSMUST00000072744.15	chr12	-	2524	20	FSM	ENSMUSG00000021038.18	ENSMUST00000072744.15	2524	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTTCCCCATCTGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	87313030	87285646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
ENSMUST00000072751.13	chr10	+	1182	5	FSM	ENSMUSG00000078440.11	ENSMUST00000072751.13	1444	5	31	231	31	-231	multi-exon	FALSE	canonical	NA	NA	NA	NA	489	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGAGGGGCCCTGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	81220292	81223955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073_81223315_81223540
ENSMUST00000072769.7	chr3	-	1366	2	FSM	ENSMUSG00000057359.8	ENSMUST00000072769.7	1800	2	67	367	67	-367	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTGAATAAACCTTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	122087129	122049973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_122051184_122086973
ENSMUST00000072779.6	chr15	+	456	1	FSM	ENSMUSG00000061848.6	ENSMUST00000072779.6	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGACTTCTCATTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	81856590	81857046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_81856600_81857000
ENSMUST00000072796.6	chr18	-	1005	1	FSM	ENSMUSG00000060096.6	ENSMUST00000072796.6	1005	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAGGAAAAATGAAGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	64582760	64581755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_64581800_64582800
ENSMUST00000072841.12	chr11	+	1454	12	FSM	ENSMUSG00000060600.16	ENSMUST00000072841.12	1454	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	70548027	70553339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_70548094_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ENSMUST00000072896.13	chr5	+	878	6	FSM	ENSMUSG00000038525.17	ENSMUST00000072896.13	2221	6	174	1169	0	-1083	multi-exon	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGAAGAATGTGCCCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	21851050	21866523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
ENSMUST00000072916.5	chr11	-	732	5	FSM	ENSMUSG00000014243.6	ENSMUST00000072916.5	732	5	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATCAAGTTATTGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	62172201	62158049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_62158433_62159529_62159635_62164537_62164641_62167443_62167466_62172082
ENSMUST00000072948.11	chr11	-	3743	14	FSM	ENSMUSG00000020777.17	ENSMUST00000072948.11	3743	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGCTGTTACGTGTAGA	NA	NA	NA	NA	NA	NA	NA	NA	116089627	116062713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116080240_116080402_116089047_116089208_116089421
ENSMUST00000072965.5	chr7	+	1443	16	FSM	ENSMUSG00000015149.15	ENSMUST00000072965.5	1843	16	0	400	0	185	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACCACCATAGCCTCTAA	NA	NA	NA	NA	NA	NA	NA	NA	28466191	28487685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_28466293_28467056_28467104_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
ENSMUST00000073025.12	chr1	+	1076	8	FSM	ENSMUSG00000026150.15	ENSMUST00000073025.12	1706	8	29	601	0	36	multi-exon	FALSE	canonical	NA	NA	NA	NA	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTTTGCATCATCGTA	NA	NA	NA	NA	NA	NA	NA	NA	82702668	82729507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713136_82713229_82724803_82724864_82728240_82728326_82729305
ENSMUST00000073067.11	chrX	-	1910	2	FSM	ENSMUSG00000032806.14	ENSMUST00000073067.11	1910	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCTCGGGTCCCTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	73416911	73412822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_73414618_73416796
ENSMUST00000073080.7	chr19	+	946	1	FSM	ENSMUSG00000058927.7	ENSMUST00000073080.7	946	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTATAGTTGATCTGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	24853049	24853995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_24853000_24854000
ENSMUST00000073192.14	chr11	-	2532	14	FSM	ENSMUSG00000020311.18	ENSMUST00000073192.14	2532	14	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTTCATGCTTTTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	30904152	30880773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_30881849_30884671_30884748_30884981_30885060_30889496_30889622_30893038_30893099_30893698_30893861_30898078_30898209_30898299_30898524_30899942_30899978_30900559_30900624_30900740_30900819_30901306_30901388_30902571_30902677_30903913
ENSMUST00000073201.6	chr8	+	1401	3	FSM	ENSMUSG00000058748.10	ENSMUST00000073201.6	1401	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAGCAATGTGGTAAATC	NA	NA	NA	NA	NA	NA	NA	NA	4675839	4679380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_4675967_4676163_4676225_4678167
ENSMUST00000073238.7	chr14	+	384	1	FSM	ENSMUSG00000060143.8	ENSMUST00000073238.7	384	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	105919261	105919645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_105919300_105919600
ENSMUST00000073261.3	chr13	+	399	1	FSM	ENSMUSG00000061991.3	ENSMUST00000073261.3	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	318	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGAGCTAAGTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	23718075	23718474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_23718100_23718500
ENSMUST00000073371.7	chr16	-	1922	3	FSM	ENSMUSG00000065979.13	ENSMUST00000073371.7	1922	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTACATTGCTTCTTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	11727309	11702086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_11703610_11705441_11705661_11727129
ENSMUST00000073392.11	chrX	-	2926	17	FSM	ENSMUSG00000031174.18	ENSMUST00000073392.11	2926	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	10083159	10024454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
ENSMUST00000073430.14	chr19	+	2112	10	FSM	ENSMUSG00000010110.18	ENSMUST00000073430.14	2112	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	NA	NA	NA	NA	NA	NA	NA	NA	8719166	8733006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ENSMUST00000073448.12	chr9	-	2987	19	FSM	ENSMUSG00000057969.16	ENSMUST00000073448.12	2987	19	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGGAATGGCCCCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	107483855	107475552	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482645_107482787_107483754
ENSMUST00000073456.9	chr13	-	2700	6	FSM	ENSMUSG00000060739.9	ENSMUST00000073456.9	2700	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTGTGGTCTAACAGT	NA	NA	NA	NA	NA	NA	NA	NA	97274445	97265931	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_97267737_97268350_97268544_97270046_97270227_97271801_97271953_97272028_97272217_97274262
ENSMUST00000073456.9-0	chr13	-	2270	6	FSM	ENSMUSG00000060739.9	ENSMUST00000073456.9	2700	6	0	430	0	-430	multi-exon	FALSE	canonical	NA	NA	NA	NA	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATTGCAAATGGACATCA	NA	NA	NA	NA	NA	NA	NA	NA	97274445	97266361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_97267737_97268350_97268544_97270046_97270227_97271801_97271953_97272028_97272217_97274262
ENSMUST00000073471.13	chr11	+	526	4	FSM	ENSMUSG00000060938.15	ENSMUST00000073471.13	526	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCTTGTGTGGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	68792408	68795360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_68792451_68793095_68793269_68794004_68794146_68795190
ENSMUST00000073488.12	chr7	-	1999	10	FSM	ENSMUSG00000060601.14	ENSMUST00000073488.12	1999	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGCCCAGTGTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	44203373	44199039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202179_44203002_44203133_44203232
ENSMUST00000073551.6	chr12	+	759	3	FSM	ENSMUSG00000042063.12	ENSMUST00000073551.6	1958	3	105	1094	53	-1094	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTTTTAGTAGTGGATCT	NA	NA	NA	NA	NA	NA	NA	NA	116011448	116023118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_116011487_116018341_116018469_116022524
ENSMUST00000073570.12	chr17	+	1197	6	FSM	ENSMUSG00000073423.11	ENSMUST00000073570.12	1197	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGAGTGCTCTTCTCCG	NA	NA	NA	NA	NA	NA	NA	NA	33848063	33850753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
ENSMUST00000073600.9	chr4	+	1995	4	FSM	ENSMUSG00000028967.11	ENSMUST00000073600.9	3036	4	0	1041	0	881	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCTGGAGGAACAGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	150938375	150952308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_150938563_150949531_150949727_150949820_150949898_150950772
ENSMUST00000073605.15	chr6	-	1272	7	FSM	ENSMUSG00000057666.19	ENSMUST00000073605.15	1272	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	NA	NA	NA	NA	NA	NA	NA	125143430	125138816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125143356
ENSMUST00000073660.7	chr11	+	2568	11	FSM	ENSMUSG00000061981.15	ENSMUST00000073660.7	2568	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCATCGTATATTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	77928809	77951260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_77928939_77940303_77940386_77944188_77944280_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
ENSMUST00000073705.12	chr11	+	2437	3	FSM	ENSMUSG00000037750.17	ENSMUST00000073705.12	3258	3	48	773	0	-148	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAACTCAGCTATTGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	77985533	78046753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_77985618_78033918_78034041_78044522
ENSMUST00000073722.7	chr8	-	342	1	FSM	ENSMUSG00000060019.7	ENSMUST00000073722.7	342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	737	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTGCTTTTGTTAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	107299982	107299640	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_107299600_107300000
ENSMUST00000073782.4	chr2	+	2797	4	FSM	ENSMUSG00000060336.7	ENSMUST00000073782.4	2797	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAAACAG	NA	NA	NA	NA	NA	NA	NA	NA	150059992	150082645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_150060119_150078611_150078739_150078948_150079010_150080162
ENSMUST00000073787.7	chr4	+	988	7	FSM	ENSMUSG00000028743.8	ENSMUST00000073787.7	1288	7	0	300	0	-300	multi-exon	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTGGAGCAGCTGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	139038054	139045437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_139038388_139041414_139041603_139041777_139041883_139044020_139044118_139044244_139044345_139044880_139045011_139045402
ENSMUST00000073790.7	chr13	+	878	1	FSM	ENSMUSG00000061833.7	ENSMUST00000073790.7	878	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	657	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGTTTTTATATGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	76102254	76103132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_76102300_76103100
ENSMUST00000073791.10	chr11	-	659	6	FSM	ENSMUSG00000034566.11	ENSMUST00000073791.10	659	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	NA	NA	NA	NA	NA	NA	NA	115310788	115306514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309377_115310717
ENSMUST00000073926.8	chr10	-	490	7	FSM	ENSMUSG00000061983.8	ENSMUST00000073926.8	490	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTGATTTTTCTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	23663086	23661102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662538_23662661_23662779_23662891_23662943_23663053
ENSMUST00000074038.7	chr12	-	2754	6	FSM	ENSMUSG00000044573.17	ENSMUST00000074038.7	2754	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTTGGGATTTTAATTG	NA	NA	NA	NA	NA	NA	NA	NA	30961588	30943654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716_30954831_30955067_30955142_30961488
ENSMUST00000074053.6	chr8	+	789	1	FSM	ENSMUSG00000061104.6	ENSMUST00000074053.6	789	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	96551973	96552762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_96552000_96552800
ENSMUST00000074072.5	chr13	-	561	1	FSM	ENSMUSG00000069117.5	ENSMUST00000074072.5	561	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCAATCAGATTCGAGA	NA	NA	NA	NA	NA	NA	NA	NA	97897140	97896579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_97896600_97897100
ENSMUST00000074085.12	chrX	+	855	6	FSM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	NA	NA	NA	NA	NA	NA	NA	73314465	73316741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
ENSMUST00000074187.13	chr7	+	1007	15	FSM	ENSMUSG00000061723.19	ENSMUST00000074187.13	1007	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTTATGTGTTGTGTTA	NA	NA	NA	NA	NA	NA	NA	NA	142052572	142069745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_142052637_142055356_142055392_142055565_142055580_142057784_142057803_142057986_142058002_142059024_142059037_142062071_142062091_142064400_142064447_142064993_142065111_142065201_142065280_142065772_142065887_142065992_142066103_142066268_142066360_142068062_142068104_142069512
ENSMUST00000074231.6	chr6	-	553	4	FSM	ENSMUSG00000073002.10	ENSMUST00000074231.6	553	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAATGCTCTCTCTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	72357451	72346016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_72346163_72346272_72346454_72347176_72347315_72357363
ENSMUST00000074240.4	chr2	+	759	5	FSM	ENSMUSG00000036186.6	ENSMUST00000074240.4	1622	5	0	863	0	-863	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAAGTCCGTGTGGGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	26518468	26525646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_26518712_26522615_26522751_26524799_26524908_26524998_26525176_26525550
ENSMUST00000074245.5	chr14	-	792	1	FSM	ENSMUSG00000062611.5	ENSMUST00000074245.5	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATCCAGATTTTTAATA	NA	NA	NA	NA	NA	NA	NA	NA	88361244	88360452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_88360500_88361200
ENSMUST00000074249.7	chr7	-	2063	3	FSM	ENSMUSG00000078580.4	ENSMUST00000074249.7	2063	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTATGACATGTACCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	126992801	126990078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126991688_126992172_126992287_126992461
ENSMUST00000074259.15	chr17	+	1466	4	FSM	ENSMUSG00000059791.15	ENSMUST00000074259.15	1466	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTTGTCTGTCCATGAC	NA	NA	NA	NA	NA	NA	NA	NA	36172209	36176294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_36172410_36174330_36174528_36175003_36175181_36175402
ENSMUST00000074267.5	chr12	-	954	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTTATGTCCTATTCTG	NA	NA	NA	NA	NA	NA	NA	NA	28685952	28680852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
ENSMUST00000074322.12	chr7	+	2016	8	FSM	ENSMUSG00000074221.13	ENSMUST00000074322.12	2016	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGCCATCAGAAAATCCAT	NA	NA	NA	NA	NA	NA	NA	NA	29687197	29723072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_29687232_29688473_29688533_29697174_29697302_29697539_29697636_29713264_29713315_29714490_29714615_29716591_29716688_29721642
ENSMUST00000074353.6	chr3	+	495	1	FSM	ENSMUSG00000060438.6	ENSMUST00000074353.6	495	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGTTGGAGTTTATGTTG	NA	NA	NA	NA	NA	NA	NA	NA	95529588	95530083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_95529600_95530100
ENSMUST00000074369.7	chr13	-	822	3	FSM	ENSMUSG00000069208.10	ENSMUST00000074369.7	822	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGTAAAGCCTTTGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	74631062	74628635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_74629270_74630657_74630719_74630935
ENSMUST00000074371.13	chr19	+	2408	12	FSM	ENSMUSG00000024975.14	ENSMUST00000074371.13	2408	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTTTAGTGGGAGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	53880661	53918282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_53880888_53895879_53895987_53897542_53897846_53899358_53899454_53901242_53901357_53908045_53908268_53909648_53909747_53910447_53910563_53914636_53914745_53914965_53915077_53915624_53915765_53917513
ENSMUST00000074425.13	chr4	+	2594	12	FSM	ENSMUSG00000034210.15	ENSMUST00000074425.13	4300	12	493	1213	0	-1213	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTGAGGAAGCAGGATTT	NA	NA	NA	NA	NA	NA	NA	NA	115595762	115633311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_115596038_115597588_115597738_115603654_115603801_115610117_115610217_115613629_115613741_115616005_115616093_115617066_115617259_115619414_115619496_115621768_115621881_115623589_115623710_115631034_115631203_115632257
ENSMUST00000074455.9	chr7	-	2777	5	FSM	ENSMUSG00000066838.8	ENSMUST00000074455.9	2777	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCATGACTATTGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	7212997	7205115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_7207359_7208511_7208599_7209244_7209372_7210523_7210563_7212716
ENSMUST00000074525.10	chr1	+	1314	11	FSM	ENSMUSG00000056870.10	ENSMUST00000074525.10	3138	11	216	1608	34	146	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCTTTTACATTATAGGT	NA	NA	NA	NA	NA	NA	NA	NA	44590886	44834390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_44591033_44728303_44728376_44747776_44747839_44783633_44783706_44793502_44793602_44805173_44805312_44812430_44812548_44813212_44813306_44820127_44820267_44827607_44827703_44834109
ENSMUST00000074606.11	chr2	-	1354	6	FSM	ENSMUSG00000060703.13	ENSMUST00000074606.11	1354	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGCCTGGTCTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	60114832	60082336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_60082836_60085414_60085442_60087376_60087548_60088226_60088344_60102445_60102557_60114403
ENSMUST00000074622.11	chr1	+	2880	8	FSM	ENSMUSG00000035131.15	ENSMUST00000074622.11	4023	8	0	1143	0	-1143	multi-exon	TRUE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAGACGAATAGAAGTACA	NA	NA	NA	NA	NA	NA	NA	NA	146370497	146777066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_146371816_146390405_146390692_146558313_146558505_146577393_146577585_146622217_146622324_146627492_146627730_146707298_146707522_146776738
ENSMUST00000074680.8	chr13	+	795	1	FSM	ENSMUSG00000059751.8	ENSMUST00000074680.8	795	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAGATTTTTAATAGTG	NA	NA	NA	NA	NA	NA	NA	NA	108807136	108807931	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_108807100_108807900
ENSMUST00000074752.4	chr13	-	393	1	FSM	ENSMUSG00000063021.4	ENSMUST00000074752.4	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCCTTGATAGAAAGCAAC	NA	NA	NA	NA	NA	NA	NA	NA	21937997	21937604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_21937600_21938000
ENSMUST00000074806.12	chr17	+	1262	7	FSM	ENSMUSG00000091705.9	ENSMUST00000074806.12	1262	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGGATGTTGTCTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	35561217	35564770	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35561373_35561575_35561846_35562088_35562365_35563730_35564007_35564133_35564251_35564429_35564463_35564635
ENSMUST00000074854.9	chr2	-	926	8	FSM	ENSMUSG00000063275.16	ENSMUST00000074854.9	926	8	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTTCAGAAAAACCGGAT	NA	NA	NA	NA	NA	NA	NA	NA	14060946	14031712	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_14031818_14040589_14040769_14045644_14045767_14049593_14049683_14049758_14049778_14049948_14050067_14060541_14060791_14060901
ENSMUST00000074912.8	chr19	+	634	5	FSM	ENSMUSG00000062376.8	ENSMUST00000074912.8	2176	5	0	1542	0	-1542	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAACTCATCTTCAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	46678344	46690279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_46678525_46687994_46688058_46688176_46688221_46689213_46689235_46689953
ENSMUST00000074941.8	chr18	+	1762	3	FSM	ENSMUSG00000063281.10	ENSMUST00000074941.8	3040	3	0	1278	0	-1278	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCCCTAGAAGTTTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	24122688	24137155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_24122789_24123234_24123448_24135706
ENSMUST00000074949.4	chr6	+	2614	2	FSM	ENSMUSG00000057137.10	ENSMUST00000074949.4	2614	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACTAAAAAAAAAAAAACAT	NA	NA	NA	NA	NA	NA	NA	NA	34840080	34851881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_34840276_34849462
ENSMUST00000074950.11	chrX	+	1036	3	FSM	ENSMUSG00000045427.14	ENSMUST00000074950.11	2426	3	46	1344	0	-674	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGGAATGTCTGATCATA	NA	NA	NA	NA	NA	NA	NA	NA	133501973	133506459	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_133502083_133503440_133503512_133505603
ENSMUST00000074963.9	chr2	+	1059	12	FSM	ENSMUSG00000063145.11	ENSMUST00000074963.9	1468	12	55	354	47	-354	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTCACACTGCAGGGACT	NA	NA	NA	NA	NA	NA	NA	NA	69477606	69497561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_69477687_69479365_69479449_69483125_69483192_69484406_69484457_69484589_69484718_69485842_69485979_69487240_69487337_69491379_69491443_69493369_69493505_69495369_69495454_69497284_69497309_69497447
ENSMUST00000075242.7	chr1	+	383	4	FSM	ENSMUSG00000073676.5	ENSMUST00000075242.7	774	4	182	209	182	-209	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGGAAAGTATGTCGACT	NA	NA	NA	NA	NA	NA	NA	NA	55127472	55130257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_55127572_55128209_55128375_55129871_55129962_55130228
ENSMUST00000075280.12	chr19	-	1018	8	FSM	ENSMUSG00000034321.15	ENSMUST00000075280.12	1018	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTGGAAAAAATTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	41921735	41912004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921487_41921604_41921690
ENSMUST00000075363.10	chr4	+	1113	9	FSM	ENSMUSG00000028937.15	ENSMUST00000075363.10	1457	9	0	344	0	-339	multi-exon	FALSE	canonical	NA	NA	NA	NA	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAAAGGCCGTTATCTGC	NA	NA	NA	NA	NA	NA	NA	NA	152262590	152355965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_152262798_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
ENSMUST00000075418.15	chr7	+	2483	6	FSM	ENSMUSG00000046027.18	ENSMUST00000075418.15	2483	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGAGTTCCTCATTTA	NA	NA	NA	NA	NA	NA	NA	NA	83281166	83291536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289629
ENSMUST00000075549.8	chr13	-	579	1	FSM	ENSMUSG00000094989.2	ENSMUST00000075549.8	579	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2739	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCCTCAGTTCCTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	72603459	72602880	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_72602900_72603500
ENSMUST00000075550.4	chr13	-	1251	9	FSM	ENSMUSG00000045273.9	ENSMUST00000075550.4	1251	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCAGGACTGGAGAGATG	NA	NA	NA	NA	NA	NA	NA	NA	100912407	100896181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
ENSMUST00000075610.13	chr7	+	1135	6	FSM	ENSMUSG00000063179.14	ENSMUST00000075610.13	1135	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGATTTGGATAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	130972869	130989568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130989346
ENSMUST00000075630.10	chr15	-	441	4	FSM	ENSMUSG00000062683.12	ENSMUST00000075630.10	441	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTGTCTCCACTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	102576184	102571448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_102571564_102573488_102573683_102574197_102574291_102576145
ENSMUST00000075639.11	chr14	+	908	7	FSM	ENSMUSG00000063458.14	ENSMUST00000075639.11	908	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAAATCACAGTCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	22069779	23106153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_22069977_22077294_22077396_22627915_22628043_22634473_22634614_22646492_22646611_22878756_22878851_23106022
ENSMUST00000075650.7	chr3	-	492	1	FSM	ENSMUSG00000034437.9	ENSMUST00000075650.7	492	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	252	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAAGATCAGTTTGCAAAA	NA	NA	NA	NA	NA	NA	NA	NA	116355075	116354583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_116354600_116355100
ENSMUST00000075657.8	chr7	-	5813	6	FSM	ENSMUSG00000063801.8	ENSMUST00000075657.8	5813	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTGGCCATGCATTTC	NA	NA	NA	NA	NA	NA	NA	NA	79570397	79525072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_79530361_79532213_79532322_79559582_79559655_79564894_79565007_79565763_79565856_79570256
ENSMUST00000075689.7	chr15	-	3284	11	FSM	ENSMUSG00000063268.13	ENSMUST00000075689.7	3284	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAGAAGGACCGGCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	76127641	76117202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_76117807_76117897_76118073_76124248_76124383_76124486_76125132_76125355_76125429_76125525_76125748_76125857_76126523_76126602_76126840_76126931_76127187_76127263_76127443_76127546
ENSMUST00000075723.7	chr9	+	490	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4388	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAATTTCTTTTGACTTGC	NA	NA	NA	NA	NA	NA	NA	NA	96777710	96778200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_96777700_96778200
ENSMUST00000075759.13	chr2	+	6327	11	FSM	ENSMUSG00000026842.17	ENSMUST00000075759.13	6327	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCTTGGTCTGTGATTC	NA	NA	NA	NA	NA	NA	NA	NA	31578562	31693553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_31579955_31668345_31668520_31668932_31669229_31674518_31674792_31680282_31680368_31680673_31680852_31682249_31682435_31684553_31684707_31686984_31687075_31687574_31687740_31690217
ENSMUST00000075805.13	chr1	-	4986	5	FSM	ENSMUSG00000026586.17	ENSMUST00000075805.13	4986	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGTCTTTTGTTATAATA	NA	NA	NA	NA	NA	NA	NA	NA	163141241	163072687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_163075966_163081545_163081618_163085329_163085512_163089408_163089585_163139963
ENSMUST00000075829.3	chr10	-	666	6	FSM	ENSMUSG00000062981.6	ENSMUST00000075829.3	666	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	95337789	95316667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337751
ENSMUST00000075843.13	chr8	-	3000	20	FSM	ENSMUSG00000002885.15	ENSMUST00000075843.13	3000	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCACGTTTGCTGGTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	84467798	84449990	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84458531_84458667_84460042_84460196_84460637_84460755_84460924_84460982_84467735
ENSMUST00000075896.7	chr8	+	671	6	FSM	ENSMUSG00000056820.8	ENSMUST00000075896.7	2391	6	52	1668	0	-1668	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTACATGGAGACTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	125739787	125759263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506_125755635_125759235
ENSMUST00000075898.4	chr9	-	882	1	FSM	ENSMUSG00000074034.2	ENSMUST00000075898.4	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	115267649	115266767	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_115266800_115267600
ENSMUST00000075962.9	chr13	+	483	1	FSM	ENSMUSG00000094446.2	ENSMUST00000075962.9	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGCTCCTGCCAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	55233589	55234072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_55233600_55234100
ENSMUST00000075980.12	chr11	+	442	5	FSM	ENSMUSG00000020895.15	ENSMUST00000075980.12	779	5	130	207	125	-207	multi-exon	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGTGTAGGGACCAAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	68961761	68963649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248_68963346_68963571
ENSMUST00000076048.5	chr3	-	440	4	FSM	ENSMUSG00000074483.3	ENSMUST00000076048.5	440	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTCGAGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	88291740	88290807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_88291075_88291280_88291339_88291481_88291515_88291658
ENSMUST00000076052.8	chr7	+	2967	9	FSM	ENSMUSG00000061119.8	ENSMUST00000076052.8	2967	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	279	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATTTATATTAATTTATA	NA	NA	NA	NA	NA	NA	NA	NA	92524459	92583791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_92524709_92550366_92550508_92554318_92554421_92559342_92559525_92566876_92567035_92568209_92568380_92576887_92577053_92577812_92578001_92582179
ENSMUST00000076155.6	chr18	+	1791	2	FSM	ENSMUSG00000059040.6	ENSMUST00000076155.6	1791	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAACAGACATAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	48178401	48181479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_48178513_48179799
ENSMUST00000076166.7	chr12	+	345	1	FSM	ENSMUSG00000062582.7	ENSMUST00000076166.7	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACAAGAAAGTTTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	99013488	99013833	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_99013500_99013800
ENSMUST00000076260.12	chr12	-	1921	7	FSM	ENSMUSG00000062352.16	ENSMUST00000076260.12	1921	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGCTTTCCTTTCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	21336285	21319806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21336106
ENSMUST00000076265.13	chrX	-	2344	10	FSM	ENSMUSG00000036572.17	ENSMUST00000076265.13	2344	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGTTTATTTATTCAAG	NA	NA	NA	NA	NA	NA	NA	NA	36373975	36355330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_36356315_36359174_36359476_36360510_36360672_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
ENSMUST00000076306.12	chr5	-	2838	14	FSM	ENSMUSG00000028944.15	ENSMUST00000076306.12	2838	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTTTTTATGTATATGA	NA	NA	NA	NA	NA	NA	NA	NA	25200751	25067745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094187_25113320_25113391_25152421_25152637_25200259
ENSMUST00000076362.12	chr1	+	1131	7	FSM	ENSMUSG00000026254.18	ENSMUST00000076362.12	3394	7	25	2238	0	-2238	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGCGTTATCAGTATTAT	NA	NA	NA	NA	NA	NA	NA	NA	87141660	87165972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87165567
ENSMUST00000076364.6	chr9	-	768	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12718	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGAGACAGGGAATCCC	NA	NA	NA	NA	NA	NA	NA	NA	50256268	50255500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_50255500_50256300
ENSMUST00000076372.5	chr3	+	1397	6	FSM	ENSMUSG00000068856.4	ENSMUST00000076372.5	1915	6	0	518	0	-518	multi-exon	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGGTCCTCCAAGACCCCC	NA	NA	NA	NA	NA	NA	NA	NA	96079647	96084362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_96079924_96080286_96080416_96080856_96081400_96081638_96081846_96083950_96084125_96084294
ENSMUST00000076373.8	chr8	-	954	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCGTCAAAGCAACCAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	103592430	103591476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_103591500_103592400
ENSMUST00000076532.14	chr13	-	1504	8	FSM	ENSMUSG00000060147.16	ENSMUST00000076532.14	1504	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTCTGCCTCACTGG	NA	NA	NA	NA	NA	NA	NA	NA	34186777	34101900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34180225_34180335_34186652
ENSMUST00000076657.11	chr7	+	515	4	FSM	ENSMUSG00000035674.14	ENSMUST00000076657.11	515	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGGAATCTGTTTATTGGG	NA	NA	NA	NA	NA	NA	NA	NA	3620371	3623326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_3620407_3620615_3620691_3622428_3622507_3622999
ENSMUST00000076702.12	chr12	+	828	5	FSM	ENSMUSG00000064215.14	ENSMUST00000076702.12	828	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGGTGGAAATAAATTAAAC	NA	NA	NA	NA	NA	NA	NA	NA	103400469	103406466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_103400610_103401680_103401833_103402821_103402942_103405659_103405822_103406212
ENSMUST00000076710.3	chr18	-	297	1	FSM	ENSMUSG00000063628.3	ENSMUST00000076710.3	297	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	840	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTCAGTTCCCATCCAA	NA	NA	NA	NA	NA	NA	NA	NA	16408001	16407704	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_16407700_16408000
ENSMUST00000076715.13	chr8	-	1403	9	FSM	ENSMUSG00000001911.17	ENSMUST00000076715.13	1403	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTTCCTCAAAATGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	85526769	85435242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_85435307_85440394_85440487_85448271_85448448_85453097_85453235_85453752_85453874_85454233_85454309_85454533_85454597_85498412_85498945_85526626
ENSMUST00000076807.7	chr18	+	1690	4	FSM	ENSMUSG00000102918.2	ENSMUST00000076807.7	4687	4	1506	1491	1484	198	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGGGTTTGTGTGTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	37940968	37973435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_37942031_37958073_37958133_37966317_37966407_37972955
ENSMUST00000076813.8	chr12	+	1141	6	FSM	ENSMUSG00000062054.8	ENSMUST00000076813.8	1141	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCACAATTTTATAAAAATG	NA	NA	NA	NA	NA	NA	NA	NA	21366389	21373820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289
ENSMUST00000076831.7	chr7	-	1025	3	FSM	ENSMUSG00000063838.7	ENSMUST00000076831.7	1025	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	399	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCTATTCACTTTACGC	NA	NA	NA	NA	NA	NA	NA	NA	4167859	4154258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_4154787_4167091_4167187_4167457
ENSMUST00000076842.7	chr18	-	879	1	FSM	ENSMUSG00000091957.4	ENSMUST00000076842.7	879	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15147	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGTTTTTATATGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	61393032	61392153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_61392200_61393000
ENSMUST00000076942.5	chr15	-	1641	2	FSM	ENSMUSG00000022237.18	ENSMUST00000076942.5	1641	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTAGTGTGCGCCTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	31367714	31324091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_31325203_31367184
ENSMUST00000076982.7	chr17	+	399	1	FSM	ENSMUSG00000072968.5	ENSMUST00000076982.7	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCCCGGGACTAAATAT	NA	NA	NA	NA	NA	NA	NA	NA	9640891	9641290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_9640900_9641300
ENSMUST00000077088.11	chr6	-	2577	12	FSM	ENSMUSG00000030254.17	ENSMUST00000077088.11	2577	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGCCTTTGTTTGGCAA	NA	NA	NA	NA	NA	NA	NA	NA	112673647	112596810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_112597866_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ENSMUST00000077191.7	chr7	+	1484	8	FSM	ENSMUSG00000064254.7	ENSMUST00000077191.7	1484	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	371	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGAGTTCTGCTTGCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	24286967	24308350	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_24287233_24293051_24293437_24293842_24293988_24294424_24294574_24305629_24305760_24307292_24307383_24307776_24307894_24308147
ENSMUST00000077208.6	chr8	-	449	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3970	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAACTTTTTATCGCT	NA	NA	NA	NA	NA	NA	NA	NA	108166211	108165762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_108165800_108166200
ENSMUST00000077221.6	chr11	-	1617	8	FSM	ENSMUSG00000020354.16	ENSMUST00000077221.6	1617	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCAAAAAGAAAACATAGACC	NA	NA	NA	NA	NA	NA	NA	NA	47270349	46869611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_46870264_46871637_46871762_46973605_46973679_47016361_47016482_47023424_47023513_47085857_47085960_47246011_47246201_47270080
ENSMUST00000077243.5	chrX	-	1032	7	FSM	ENSMUSG00000031371.15	ENSMUST00000077243.5	1032	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	NA	NA	NA	NA	NA	NA	NA	72502650	72480920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72496604_72496667_72498472_72498541_72501579_72501696_72502440
ENSMUST00000077271.9	chr3	+	2603	18	FSM	ENSMUSG00000027774.17	ENSMUST00000077271.9	4078	18	20	1455	20	-34	multi-exon	TRUE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAATATTATATAAGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	67337448	67382407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
ENSMUST00000077353.15	chr9	-	1605	14	FSM	ENSMUSG00000032126.17	ENSMUST00000077353.15	1605	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTTTCTGTTGTAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	44255525	44247635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44255306
ENSMUST00000077376.3	chr5	+	938	3	FSM	ENSMUSG00000047635.7	ENSMUST00000077376.3	1677	3	0	739	0	-739	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCAGTTCTTGCAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	124466160	124479168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_124466293_124476689_124476999_124478671
ENSMUST00000077389.8	chr3	+	444	1	FSM	ENSMUSG00000057036.8	ENSMUST00000077389.8	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGCCACACCGGAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	24387231	24387675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_24387200_24387700
ENSMUST00000077420.5	chr17	+	515	1	FSM	ENSMUSG00000094256.3	ENSMUST00000077420.5	515	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAAAAAAAAAAAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	83595974	83596489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_83596000_83596500
ENSMUST00000077435.5	chr19	-	888	1	FSM	ENSMUSG00000057605.5	ENSMUST00000077435.5	888	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGTTAACCTCATTAAACA	NA	NA	NA	NA	NA	NA	NA	NA	45439634	45438746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_45438700_45439600
ENSMUST00000077577.8	chr15	-	1743	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26944	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTCTGGATACTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	98832446	98829305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
ENSMUST00000077609.12	chr7	+	1831	15	FSM	ENSMUSG00000030795.19	ENSMUST00000077609.12	1831	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTCCCCCAGTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	127566661	127581204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571012_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
ENSMUST00000077747.6	chr7	-	492	1	FSM	ENSMUSG00000058050.6	ENSMUST00000077747.6	492	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTCTTTTGACTTGCGG	NA	NA	NA	NA	NA	NA	NA	NA	120614856	120614364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_120614400_120614900
ENSMUST00000077755.11	chr1	+	1914	4	FSM	ENSMUSG00000008475.14	ENSMUST00000077755.11	1914	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTAACTCTCCAGTTA	NA	NA	NA	NA	NA	NA	NA	NA	152642292	152651348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_152642619_152644611_152644685_152647114_152647292_152650010
ENSMUST00000077776.7	chr10	+	462	1	FSM	ENSMUSG00000064208.7	ENSMUST00000077776.7	462	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATCTGCCATGAGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	27812359	27812821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_27812400_27812800
ENSMUST00000077791.8	chr8	+	1095	4	FSM	ENSMUSG00000055835.11	ENSMUST00000077791.8	1811	4	31	685	0	-356	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCGGGAAGTCCTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	112370168	112396958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_112370245_112385017_112385074_112392709_112392837_112396122
ENSMUST00000077856.13	chr11	+	614	5	FSM	ENSMUSG00000063316.14	ENSMUST00000077856.13	614	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	NA	NA	NA	NA	NA	NA	NA	NA	101333123	101336355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_101333283_101333548_101333632_101334326_101334497_101336045_101336157_101336264
ENSMUST00000077915.10	chr11	+	364	5	FSM	ENSMUSG00000057322.13	ENSMUST00000077915.10	364	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	114559373	114563157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_114559453_114559606_114559641_114559731_114559793_114562559_114562683_114563090
ENSMUST00000077916.12	chr3	+	1114	7	FSM	ENSMUSG00000048416.16	ENSMUST00000077916.12	1114	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGTGGTTAAATTGGT	NA	NA	NA	NA	NA	NA	NA	NA	67281429	67307331	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_67281596_67291883_67292032_67300224_67300309_67301267_67301397_67302584_67302745_67305113_67305244_67307034
ENSMUST00000077938.10	chr17	-	1405	9	FSM	ENSMUSG00000061046.10	ENSMUST00000077938.10	1405	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGCAGGTCTGTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	26004647	26001762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
ENSMUST00000077967.13	chr7	+	2647	8	FSM	ENSMUSG00000053091.17	ENSMUST00000077967.13	2647	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGCGTGTCTGGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	66339705	66364492	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_66339772_66345923_66346055_66357787_66358302_66358386_66358477_66359041_66359184_66359906_66360495_66361620_66361793_66363548
ENSMUST00000077991.4	chr9	+	1348	1	FSM	ENSMUSG00000056904.4	ENSMUST00000077991.4	1348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTCCATTCCTCGAGCC	NA	NA	NA	NA	NA	NA	NA	NA	90979201	90980549	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_90979200_90980500
ENSMUST00000078030.5	chr1	-	603	1	FSM	ENSMUSG00000062588.5	ENSMUST00000078030.5	603	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTGTCTCCTTGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	4950874	4950271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_4950300_4950900
ENSMUST00000078034.5	chr19	-	714	1	FSM	ENSMUSG00000062456.5	ENSMUST00000078034.5	714	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATGTTAGTAAAAATGTG	NA	NA	NA	NA	NA	NA	NA	NA	32443978	32443264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_32443300_32444000
ENSMUST00000078074.9	chr2	+	1246	8	FSM	ENSMUSG00000064289.16	ENSMUST00000078074.9	2018	8	25	747	25	-747	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTGATTCAGACTCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	61408954	61483768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_61409038_61443994_61444143_61457246_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
ENSMUST00000078218.11	chr15	+	1371	12	FSM	ENSMUSG00000058586.13	ENSMUST00000078218.11	1371	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCAAGTGGCTGTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	82984404	83000875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_82984549_82985844_82985995_82986072_82986187_82986499_82986542_82986825_82986846_82987134_82987210_82988509_82988623_82989811_82989892_82996410_82996446_82998557_82998641_82999767_82999865_83000457
ENSMUST00000078259.8	chr1	+	4879	6	FSM	ENSMUSG00000062510.13	ENSMUST00000078259.8	4879	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAGAAGAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	190795227	190818671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367
ENSMUST00000078332.13	chr1	+	1188	9	FSM	ENSMUSG00000026150.15	ENSMUST00000078332.13	1894	9	44	662	-6	-22	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCACATATATTGTCTCA	NA	NA	NA	NA	NA	NA	NA	NA	82702654	82729449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82719538_82719698_82724803_82724864_82728240_82728326_82729305
ENSMUST00000078434.8	chr14	-	1970	14	FSM	ENSMUSG00000022092.12	ENSMUST00000078434.8	1970	14	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATATATATAAAATACTT	NA	NA	NA	NA	NA	NA	NA	NA	70526920	70455346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_70455727_70457465_70457496_70461758_70461857_70462415_70462498_70472588_70472658_70473926_70474053_70478177_70478273_70478352_70478431_70483301_70483442_70485022_70485169_70493808_70493921_70504078_70504204_70504757_70504956_70526629
ENSMUST00000078459.8	chr17	-	1400	9	FSM	ENSMUSG00000058704.10	ENSMUST00000078459.8	1400	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTGATTTAAACTTATT	NA	NA	NA	NA	NA	NA	NA	NA	74601785	74507696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_74508321_74509255_74509361_74527482_74527536_74532426_74532570_74548899_74549012_74551969_74552083_74562222_74562292_74565418_74565501_74601686
ENSMUST00000078478.8	chr9	-	1957	6	FSM	ENSMUSG00000043587.16	ENSMUST00000078478.8	2908	6	9	942	-7	-700	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGTCAGTATCTTAGGC	NA	NA	NA	NA	NA	NA	NA	NA	96771473	96706338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_96707676_96710982_96711123_96721138_96721266_96722011_96722171_96738420_96738553_96771411
ENSMUST00000078497.15	chr7	+	1067	17	FSM	ENSMUSG00000061723.19	ENSMUST00000078497.15	1067	17	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTTATGTGTTGTGTTA	NA	NA	NA	NA	NA	NA	NA	NA	142052572	142069745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_142052637_142055356_142055392_142055565_142055580_142056476_142056495_142057784_142057803_142057986_142058002_142059252_142059268_142061486_142061526_142062071_142062091_142064400_142064447_142064993_142065111_142065201_142065280_142065772_142065887_142065992_142066103_142066268_142066360_142068062_142068104_142069512
ENSMUST00000078509.12	chr17	-	2403	16	FSM	ENSMUSG00000024039.16	ENSMUST00000078509.12	2403	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGTGTCGACCTTATT	NA	NA	NA	NA	NA	NA	NA	NA	31856139	31831614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
ENSMUST00000078572.9	chr9	-	1219	10	FSM	ENSMUSG00000032182.16	ENSMUST00000078572.9	1894	10	0	675	0	-671	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGGTTCCCAGCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	21504068	21500652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504032
ENSMUST00000078589.7	chr8	-	523	3	FSM	ENSMUSG00000014633.16	ENSMUST00000078589.7	523	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCACTGGACAGCGTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	117648178	117616271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_117616599_117637866_117637974_117648089
ENSMUST00000078676.6	chr4	-	547	4	FSM	ENSMUSG00000063882.13	ENSMUST00000078676.6	547	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	115932268	115924161	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_115924370_115927059_115927222_115927933_115927955_115932112
ENSMUST00000078687.6	chr2	+	2063	4	FSM	ENSMUSG00000027573.12	ENSMUST00000078687.6	2063	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAATGGCTTCTAAAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	180354338	180360523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_180355114_180356482_180356680_180358651_180358850_180359630
ENSMUST00000078717.7	chr16	+	1407	4	FSM	ENSMUSG00000034158.10	ENSMUST00000078717.7	8604	4	0	7197	0	-7197	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATTTATTGTGAATGGCA	NA	NA	NA	NA	NA	NA	NA	NA	37688750	37702023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_37689343_37697410_37697540_37698648_37698927_37701615
ENSMUST00000078739.7	chr18	+	1355	1	FSM	ENSMUSG00000058625.7	ENSMUST00000078739.7	1355	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	293	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCATTCCTTGAGCCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	82356586	82357941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_82356600_82357900
ENSMUST00000078764.9	chr13	-	433	3	FSM	ENSMUSG00000017778.15	ENSMUST00000078764.9	433	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGCCTCGTCTCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	86194579	86192934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_86193028_86193845_86193989_86194382
ENSMUST00000078766.10	chr9	+	467	1	FSM	ENSMUSG00000058838.10	ENSMUST00000078766.10	467	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2449	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTGTGTATGCGTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	83291712	83292179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_83291700_83292200
ENSMUST00000078804.12	chr16	+	491	5	FSM	ENSMUSG00000060636.15	ENSMUST00000078804.12	491	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTTTCTCTTTGTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	32876822	32880559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_32876881_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUST00000078825.5	chr1	+	1256	5	FSM	ENSMUSG00000059089.5	ENSMUST00000078825.5	1256	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGTGCAGCAGCTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	170846488	170857330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_170846589_170847096_170847118_170847464_170847720_170853112_170853368_170856705
ENSMUST00000078912.7	chr3	-	3368	18	FSM	ENSMUSG00000027889.18	ENSMUST00000078912.7	3368	18	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATAAAAAGATTATTTA	NA	NA	NA	NA	NA	NA	NA	NA	107992715	107981402	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107992562
ENSMUST00000078944.13	chrX	+	4350	11	FSM	ENSMUSG00000025626.17	ENSMUST00000078944.13	4350	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGTGTCTGCTTTGTAA	NA	NA	NA	NA	NA	NA	NA	NA	52001142	52045820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_52001314_52005429_52005614_52006042_52006145_52020449_52020584_52020857_52020902_52029101_52029269_52029413_52029558_52031440_52031546_52034760_52034895_52042328_52042456_52042782
ENSMUST00000078945.12	chr5	-	2538	10	FSM	ENSMUSG00000044221.15	ENSMUST00000078945.12	2538	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGTATATTTTCTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	88824030	88807306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_88808319_88810393_88810470_88810978_88811115_88811922_88812045_88813615_88813801_88818034_88818171_88819020_88819165_88820463_88820620_88821551_88821709_88823616
ENSMUST00000078988.10	chr16	+	2394	12	FSM	ENSMUSG00000033306.16	ENSMUST00000078988.10	3894	12	0	1500	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCCTTGGTGAGCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	24266840	24798280	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_24266999_24275582_24275693_24378341_24378408_24426865_24427068_24480426_24480540_24500495_24500622_24580342_24581027_24663840_24663968_24708539_24708710_24790580_24790760_24795949_24796071_24797942
ENSMUST00000079121.4	chr17	-	922	4	FSM	ENSMUSG00000057388.10	ENSMUST00000079121.4	1219	4	0	297	0	-297	multi-exon	FALSE	canonical	NA	NA	NA	NA	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAAACTACCATCTACAG	NA	NA	NA	NA	NA	NA	NA	NA	13135232	13130532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_13130637_13132656_13132889_13134524_13134712_13134833
ENSMUST00000079125.8	chr2	-	505	2	FSM	ENSMUSG00000046229.11	ENSMUST00000079125.8	803	2	125	173	125	-173	multi-exon	FALSE	canonical	NA	NA	NA	NA	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAGATGCTGGTGCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	156154542	156153938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_156154323_156154421
ENSMUST00000079130.14	chr16	-	1459	6	FSM	ENSMUSG00000063445.15	ENSMUST00000079130.14	1459	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTTTCCCAAAAGAAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	4537220	4529180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_4529468_4531503_4531695_4532280_4532531_4533464_4533495_4534160_4534400_4536758
ENSMUST00000079213.6	chr4	-	1516	10	FSM	ENSMUSG00000063800.6	ENSMUST00000079213.6	1516	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	333	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGGCTTTTTGTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	108436533	108422066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_108422465_108424101_108424151_108424619_108424718_108424810_108424838_108425554_108425668_108427352_108427464_108430002_108430089_108432565_108432688_108434125_108434286_108436181
ENSMUST00000079237.7	chr12	-	2488	2	FSM	ENSMUSG00000069755.6	ENSMUST00000079237.7	2488	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACAACTCACACTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	20952660	20948574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_20950936_20952533
ENSMUST00000079252.13	chr10	+	2606	6	FSM	ENSMUSG00000060733.14	ENSMUST00000079252.13	5447	6	80	2761	7	1124	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCACCTCTTTTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	71183672	71218954	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_71183921_71199279_71199366_71201838_71201936_71208537_71208711_71212534_71212617_71217034
ENSMUST00000079261.7	chr5	-	882	1	FSM	ENSMUSG00000057244.7	ENSMUST00000079261.7	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1307	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	129700935	129700053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_129700100_129700900
ENSMUST00000079324.14	chr5	-	1194	5	FSM	ENSMUSG00000001687.16	ENSMUST00000079324.14	2537	5	0	1343	0	-836	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCAGTGTGGTCCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	148489472	148442787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_148442998_148443255_148443334_148446078_148446166_148448703_148448813_148488762
ENSMUST00000079363.6	chr17	+	1444	1	FSM	ENSMUSG00000061062.6	ENSMUST00000079363.6	1444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAGCAAGGTCTGCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	78799010	78800454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_78799000_78800500
ENSMUST00000079391.10	chr6	+	3424	14	FSM	ENSMUSG00000029761.17	ENSMUST00000079391.10	4127	14	120	583	55	-583	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCGTGAATTAGTAAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	34575554	34751806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_34575601_34639062_34639152_34662897_34663010_34718723_34718871_34722553_34722951_34730377_34730524_34732574_34732834_34734918_34735060_34739044_34739089_34739185_34739265_34741890_34742029_34743037_34743134_34747982_34748064_34750157
ENSMUST00000079391.10-1	chr6	+	3404	14	FSM	ENSMUSG00000029761.17	ENSMUST00000079391.10	4127	14	44	679	-20	-679	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCCTCTAACATTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	34575478	34751710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_34575601_34639062_34639152_34662897_34663010_34718723_34718871_34722553_34722951_34730377_34730524_34732574_34732834_34734918_34735060_34739044_34739089_34739185_34739265_34741890_34742029_34743037_34743134_34747982_34748064_34750157
ENSMUST00000079419.12	chr14	+	883	4	FSM	ENSMUSG00000012405.17	ENSMUST00000079419.12	883	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	NA	NA	NA	NA	NA	NA	NA	4198666	4200736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_4198874_4199235_4199418_4199652_4199790_4200379
ENSMUST00000079472.4	chr8	+	1972	13	FSM	ENSMUSG00000057228.7	ENSMUST00000079472.4	1972	13	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAAGTTACTTTGTTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	60958965	60998711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_60959314_60960122_60960292_60969013_60969147_60971565_60971641_60979604_60979815_60982409_60982476_60984699_60984783_60985232_60985330_60987607_60987670_60988760_60988826_60993088_60993196_60996555_60996658_60998256
ENSMUST00000079703.11	chr15	+	1054	7	FSM	ENSMUSG00000059586.11	ENSMUST00000079703.11	1054	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCATGGTCCTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	59246135	59473533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59463545_59463647_59463986_59464094_59473188
ENSMUST00000079706.7	chr15	-	438	1	FSM	ENSMUSG00000049414.8	ENSMUST00000079706.7	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATTTGAATGAGGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	83290264	83289826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_83289800_83290300
ENSMUST00000079716.6	chr18	+	775	7	FSM	ENSMUSG00000062328.9	ENSMUST00000079716.6	775	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGACTGTCTAGTAGC	NA	NA	NA	NA	NA	NA	NA	NA	75133547	75136452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_75133615_75134261_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUST00000079719.11	chr5	+	3968	7	FSM	ENSMUSG00000018604.19	ENSMUST00000079719.11	4982	7	349	665	0	-665	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCTTGTAGAGGGCTTCG	NA	NA	NA	NA	NA	NA	NA	NA	119809082	119821961	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_119810470_119812090_119812359_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
ENSMUST00000079721.9	chr1	+	2067	2	FSM	ENSMUSG00000058665.9	ENSMUST00000079721.9	2624	2	0	557	0	-557	multi-exon	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTCACTGTATAAGATGA	NA	NA	NA	NA	NA	NA	NA	NA	120530146	120535164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_120531651_120534601
ENSMUST00000079724.9	chr3	-	1139	7	FSM	ENSMUSG00000027944.14	ENSMUST00000079724.9	1139	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGTTTTGTCAAGGTC	NA	NA	NA	NA	NA	NA	NA	NA	89906004	89902752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905834
ENSMUST00000079733.7	chr18	+	534	1	FSM	ENSMUSG00000058064.7	ENSMUST00000079733.7	534	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACTTGATCCAAAAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	15965850	15966384	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_15965800_15966400
ENSMUST00000079761.8	chr3	+	636	1	FSM	ENSMUSG00000059776.8	ENSMUST00000079761.8	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5723	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTGGAGAGTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	58894590	58895226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_58894600_58895200
ENSMUST00000079764.14	chr8	+	497	4	FSM	ENSMUSG00000059355.14	ENSMUST00000079764.14	922	4	248	177	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGGGCCCTGCTTCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	85807616	85808791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_85807693_85807801_85807908_85808405_85808504_85808574
ENSMUST00000079818.5	chr15	+	313	1	FSM	ENSMUSG00000064081.5	ENSMUST00000079818.5	313	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAACCCGGGGCTGGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	98903937	98904250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_98903900_98904200
ENSMUST00000079881.11	chr6	+	1375	6	FSM	ENSMUSG00000062519.14	ENSMUST00000079881.11	2906	6	0	1531	0	-1531	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACAAGCAGATGTTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	47812597	47843091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_47812855_47817185_47817582_47835862_47835990_47836352_47836467_47840037_47840152_47842724
ENSMUST00000079883.12	chr10	+	1804	7	FSM	ENSMUSG00000113949.2	ENSMUST00000079883.12	1804	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1532	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGCCTTTATCTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	80438713	80451617	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80438784_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ENSMUST00000079896.9	chr8	+	916	5	FSM	ENSMUSG00000025521.16	ENSMUST00000079896.9	916	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAATGTTTTGTATGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	65399905	65421683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_65399986_65409037_65409185_65411996_65412262_65418190_65418294_65421362
ENSMUST00000079949.13	chr11	-	2588	17	FSM	ENSMUSG00000009079.17	ENSMUST00000079949.13	2588	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTCCTCCTCTGTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	5049266	5019688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUST00000079949.13-0	chr11	-	2389	17	FSM	ENSMUSG00000009079.17	ENSMUST00000079949.13	2588	17	199	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTCCTCCTCTGTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	5049067	5019688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUST00000079960.2	chr14	+	624	1	FSM	ENSMUSG00000059835.2	ENSMUST00000079960.2	624	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGTGTTGGAGAGTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	59130954	59131578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_59131000_59131600
ENSMUST00000079976.10	chr2	-	1884	8	FSM	ENSMUSG00000002105.16	ENSMUST00000079976.10	1884	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCTTCCACATACTAGG	NA	NA	NA	NA	NA	NA	NA	NA	90900574	90892135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895926_90896060_90896357_90896472_90900499
ENSMUST00000080001.9	chr1	-	1007	7	FSM	ENSMUSG00000062963.11	ENSMUST00000080001.9	1007	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGGTTCTCATTGATG	NA	NA	NA	NA	NA	NA	NA	NA	171122597	171116135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117790_171122206_171122401_171122493
ENSMUST00000080008.13	chr2	+	1637	16	FSM	ENSMUSG00000027255.15	ENSMUST00000080008.13	3068	16	360	1071	41	-1052	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTGGGGAGTTGTTGAC	NA	NA	NA	NA	NA	NA	NA	NA	91095678	91106205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097602_91097680_91097762_91098501_91098584_91098796_91098854_91099796_91099850_91100277_91100415_91100502_91100635_91103885_91104015_91104097_91104233_91105139_91105267_91105417_91105512_91105620_91105740_91106109
ENSMUST00000080058.11	chr7	-	2107	6	FSM	ENSMUSG00000058709.12	ENSMUST00000080058.11	2107	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTTGTATTCCTCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	26866227	26858082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26866108
ENSMUST00000080065.3	chr2	+	2735	13	FSM	ENSMUSG00000059316.3	ENSMUST00000080065.3	4054	13	0	1319	0	-1319	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCTGGGGAAAAGAGGACA	NA	NA	NA	NA	NA	NA	NA	NA	29692645	29706215	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_29692973_29694171_29694339_29695627_29696023_29697367_29697527_29699673_29699744_29699847_29699940_29700872_29700983_29701197_29701408_29701580_29701708_29702276_29702415_29702563_29702729_29702799_29702947_29705587
ENSMUST00000080138.13	chr1	+	993	4	FSM	ENSMUSG00000033701.14	ENSMUST00000080138.13	993	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	155433865	155448034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155447943
ENSMUST00000080149.6	chr4	+	1902	8	FSM	ENSMUSG00000063524.14	ENSMUST00000080149.6	1902	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	NA	NA	NA	NA	NA	NA	NA	150327942	150333330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ENSMUST00000080202.12	chr11	-	1727	10	FSM	ENSMUSG00000025138.15	ENSMUST00000080202.12	1727	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	NA	NA	NA	NA	NA	NA	NA	NA	120515840	120509197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_120509876_120510988_120511096_120511249_120511331_120511472_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
ENSMUST00000080281.14	chr14	+	1922	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTTATCTTTTATGTT	NA	NA	NA	NA	NA	NA	NA	NA	4198628	4201873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
ENSMUST00000080300.9	chr9	+	860	5	FSM	ENSMUSG00000009927.10	ENSMUST00000080300.9	1280	5	187	233	187	2	multi-exon	FALSE	canonical	NA	NA	NA	NA	1923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGGTGCATCTGTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	44318622	44321491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250_44321350_44321442
ENSMUST00000080316.8	chr16	+	484	4	FSM	ENSMUSG00000014075.16	ENSMUST00000080316.8	720	4	49	187	49	-187	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATATGTTTAAATGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	32238612	32247726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_32238746_32241637_32241772_32245675_32245740_32247573
ENSMUST00000080348.12	chr7	-	2591	4	FSM	ENSMUSG00000034071.16	ENSMUST00000080348.12	2591	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAAAAAAAAAAGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	12156678	12149079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_12151146_12152469_12152594_12155734_12155774_12156316
ENSMUST00000080353.3	chr8	-	2812	2	FSM	ENSMUSG00000063049.5	ENSMUST00000080353.3	2812	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATGTCCTCCATCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	48128193	48120212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_48122372_48127540
ENSMUST00000080356.10	chr7	-	1365	7	FSM	ENSMUSG00000061479.16	ENSMUST00000080356.10	1365	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	26895696	26886431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895415
ENSMUST00000080411.13	chrX	-	1859	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	135642101	135633701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
ENSMUST00000080443.8	chr8	-	456	1	FSM	ENSMUSG00000057657.5	ENSMUST00000080443.8	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	339	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTCTCTGGGCCTTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	107989880	107989424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_107989400_107989900
ENSMUST00000080449.7	chr12	+	2524	2	FSM	ENSMUSG00000059970.8	ENSMUST00000080449.7	2524	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGTCTGGCGTTTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	76450949	76453712	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_76451064_76451302
ENSMUST00000080492.7	chr17	+	298	4	FSM	ENSMUSG00000057863.7	ENSMUST00000080492.7	383	4	0	85	0	-85	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTGAGCAACGTGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	56920415	56921158	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_56920449_56920585_56920681_56920906_56921042_56921123
ENSMUST00000080511.3	chr13	-	743	1	FSM	ENSMUSG00000058773.3	ENSMUST00000080511.3	743	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGCTTGCGACAGCAACA	NA	NA	NA	NA	NA	NA	NA	NA	21964795	21964052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_21964100_21964800
ENSMUST00000080517.14	chr4	+	1050	6	FSM	ENSMUSG00000059482.16	ENSMUST00000080517.14	2116	6	70	996	0	-996	multi-exon	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGAGTGTTCATGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	10874567	10898425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_10874773_10879522_10879611_10881800_10881869_10882406_10882473_10893262_10893359_10897898
ENSMUST00000080545.5	chr13	+	579	1	FSM	ENSMUSG00000095847.2	ENSMUST00000080545.5	579	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCCTCAGTTCCTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	67022144	67022723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_67022100_67022700
ENSMUST00000080553.9	chr7	-	2135	12	FSM	ENSMUSG00000058886.10	ENSMUST00000080553.9	2135	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGTTGTCAAGCCATTT	NA	NA	NA	NA	NA	NA	NA	NA	140907585	140877092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_140877530_140881512_140881603_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140907191
ENSMUST00000080666.8	chr8	+	2738	14	FSM	ENSMUSG00000036564.18	ENSMUST00000080666.8	2738	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTCGTGTTTCCTATC	NA	NA	NA	NA	NA	NA	NA	NA	96429690	96441584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_96429806_96432815_96432922_96433158_96433280_96433364_96433428_96433556_96433618_96435235_96435323_96435404_96435462_96435710_96435815_96436393_96436451_96436530_96436583_96437291_96437340_96437561_96437598_96437720_96437773_96439805
ENSMUST00000080834.15	chr7	-	2181	7	FSM	ENSMUSG00000098022.8	ENSMUST00000080834.15	2181	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGTTCCACTGTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	29772325	29755461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29771453_29771565_29772205
ENSMUST00000080856.14	chr13	-	4325	30	FSM	ENSMUSG00000042590.18	ENSMUST00000080856.14	4325	30	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGACTTGTTGTCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	107073466	106930946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_106932304_106948715_106948801_106959463_106959560_106978596_106978719_106983853_106983968_106984748_106984845_106993245_106993327_106993736_106993817_106997368_106997446_107002372_107002489_107007182_107007297_107011998_107012116_107012746_107012788_107013442_107013477_107016120_107016248_107019349_107019456_107020033_107020082_107023174_107023266_107025870_107025915_107028123_107028277_107028930_107029124_107032312_107032384_107033723_107033773_107035426_107035486_107037192_107037326_107046707_107046912_107047251_107047325_107056031_107056133_107061520_107061665_107073267
ENSMUST00000080860.13	chr10	-	1190	6	FSM	ENSMUSG00000059554.13	ENSMUST00000080860.13	1190	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTTTTCTGTTTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	18110744	18089423	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_18089927_18092007_18092031_18095235_18095391_18100644_18100809_18106166_18106367_18110599
ENSMUST00000080861.6	chr2	-	946	4	FSM	ENSMUSG00000062997.7	ENSMUST00000080861.6	946	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCTTCATGTTTTACAT	NA	NA	NA	NA	NA	NA	NA	NA	38895636	38891591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_38891778_38894118_38894201_38894743_38894881_38895095
ENSMUST00000080861.6-0	chr2	-	713	4	FSM	ENSMUSG00000062997.7	ENSMUST00000080861.6	946	4	233	0	233	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCTTCATGTTTTACAT	NA	NA	NA	NA	NA	NA	NA	NA	38895403	38891591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_38891778_38894118_38894201_38894743_38894881_38895095
ENSMUST00000080884.11	chrX	+	1739	14	FSM	ENSMUSG00000025271.14	ENSMUST00000080884.11	1739	14	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	149372916	149426874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ENSMUST00000080885.12	chr7	+	1187	4	FSM	ENSMUSG00000059824.13	ENSMUST00000080885.12	1837	4	196	454	0	-365	multi-exon	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTGTGCGGGCTGCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	45354707	45359173	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_45355187_45356029_45356441_45357683_45357896_45359088
ENSMUST00000080975.6	chr10	-	2458	14	FSM	ENSMUSG00000040462.14	ENSMUST00000080975.6	2458	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCAGGCTCTGTGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	126956994	126931518	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_126932242_126932498_126932612_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
ENSMUST00000080987.7	chr8	-	599	4	FSM	ENSMUSG00000054648.9	ENSMUST00000080987.7	1590	4	-261	1252	-261	-1252	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGAGTGGACCGTCTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	70163635	70160233	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335
ENSMUST00000081111.14	chr9	+	1858	14	FSM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGAGTTCAATGGGCAC	NA	NA	NA	NA	NA	NA	NA	NA	108437484	108442783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUST00000081180.7	chr1	+	342	4	FSM	ENSMUSG00000061518.12	ENSMUST00000081180.7	625	4	179	104	144	-104	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGCCCCACCAAATGGC	NA	NA	NA	NA	NA	NA	NA	NA	36730708	36732363	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_36730771_36731291_36731366_36731511_36731632_36732277
ENSMUST00000081202.6	chr2	+	804	3	FSM	ENSMUSG00000063019.6	ENSMUST00000081202.6	1107	3	0	303	0	238	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTGAGCCAGCCAGGTCC	NA	NA	NA	NA	NA	NA	NA	NA	157209513	157238380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_157209561_157220968_157221175_157237829
ENSMUST00000081214.12	chr6	-	2205	15	FSM	ENSMUSG00000058486.12	ENSMUST00000081214.12	2682	15	43	434	-6	-58	multi-exon	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCTCCATGGATGGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	34887768	34857794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_34857904_34861118_34861317_34863000_34863114_34863742_34863852_34865888_34866058_34866171_34866267_34868321_34868473_34869275_34869470_34873115_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295_34886476_34887631
ENSMUST00000081241.2	chr11	-	411	1	FSM	ENSMUSG00000091478.3	ENSMUST00000081241.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	456	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCCCTGGGGTCACCCAG	NA	NA	NA	NA	NA	NA	NA	NA	100252952	100252541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_100252500_100253000
ENSMUST00000081331.12	chr14	+	1296	8	FSM	ENSMUSG00000072723.13	ENSMUST00000081331.12	1296	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTCAGGCTCAGATCGA	NA	NA	NA	NA	NA	NA	NA	NA	14678121	14724981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_14678366_14679640_14679756_14681118_14681293_14692960_14693263_14698470_14698633_14703524_14703559_14704918_14704992_14724789
ENSMUST00000081333.11	chr19	-	1114	5	FSM	ENSMUSG00000059363.11	ENSMUST00000081333.11	1114	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAATGTCTTACACTGTG	NA	NA	NA	NA	NA	NA	NA	NA	24257969	24238816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_24239418_24244665_24244764_24249710_24249832_24254544_24254640_24257770
ENSMUST00000081335.13	chr2	+	2078	3	FSM	ENSMUSG00000062175.14	ENSMUST00000081335.13	2900	3	0	822	0	602	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTAATCTCTCCCCTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	156681926	156696668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_156682159_156686075_156686302_156695048
ENSMUST00000081342.7	chr13	-	482	1	FSM	ENSMUSG00000094777.3	ENSMUST00000081342.7	482	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGTGTCTTTTAAAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	22017677	22017195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_22017200_22017700
ENSMUST00000081387.11	chr11	+	947	4	FSM	ENSMUSG00000017716.16	ENSMUST00000081387.11	947	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTAAGCTCTGTCTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	117740076	117746558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_117740288_117740579_117740690_117743488_117743607_117746050
ENSMUST00000081387.11-0	chr11	+	785	4	FSM	ENSMUSG00000017716.16	ENSMUST00000081387.11	947	4	68	94	0	-94	multi-exon	FALSE	canonical	NA	NA	NA	NA	1166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTAAGTGTGGTTATATGT	NA	NA	NA	NA	NA	NA	NA	NA	117740144	117746464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_117740288_117740579_117740690_117743488_117743607_117746050
ENSMUST00000081387.11-2	chr11	+	783	4	FSM	ENSMUSG00000017716.16	ENSMUST00000081387.11	947	4	0	164	0	-164	multi-exon	FALSE	canonical	NA	NA	NA	NA	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGGGTGCCTGTGCAAGG	NA	NA	NA	NA	NA	NA	NA	NA	117740076	117746394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_117740288_117740579_117740690_117743488_117743607_117746050
ENSMUST00000081435.5	chr17	+	1793	6	FSM	ENSMUSG00000035929.12	ENSMUST00000081435.5	1793	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGGTCTGCCTTACATT	NA	NA	NA	NA	NA	NA	NA	NA	35598592	35603650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35598684_35598795_35599150_35599336_35599613_35601833_35602110_35602236_35602353_35602970
ENSMUST00000081455.6	chr1	+	552	1	FSM	ENSMUSG00000059647.6	ENSMUST00000081455.6	552	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTGCATTTATATATAT	NA	NA	NA	NA	NA	NA	NA	NA	58685846	58686398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_58685800_58686400
ENSMUST00000081497.13	chr5	+	1025	6	FSM	ENSMUSG00000060152.15	ENSMUST00000081497.13	1025	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCCCCGTGTGGTTCGAG	NA	NA	NA	NA	NA	NA	NA	NA	115373894	115379050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_115373944_115375882_115376129_115376193_115376337_115378220_115378371_115378531_115378616_115378697
ENSMUST00000081503.13	chr8	+	1560	8	FSM	ENSMUSG00000031860.18	ENSMUST00000081503.13	1560	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	NA	NA	NA	NA	NA	NA	NA	NA	70285140	70324942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_70285502_70311729_70311804_70316961_70317201_70317473_70317665_70319117_70319254_70322678_70322833_70323227_70323335_70324644
ENSMUST00000081506.11	chr8	-	1791	4	FSM	ENSMUSG00000063253.12	ENSMUST00000081506.11	1791	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGTGTGTGTGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	84184978	84161123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_84162670_84164181_84164266_84164613_84164686_84184889
ENSMUST00000081525.4	chr4	+	1579	2	FSM	ENSMUSG00000037348.16	ENSMUST00000081525.4	2351	2	0	772	0	-772	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGATTGGCTGGGAGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	134224007	134235352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_134224348_134234113
ENSMUST00000081527.2	chr1	+	1273	1	FSM	ENSMUSG00000060244.2	ENSMUST00000081527.2	1273	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACCTTGCCTTTGATG	NA	NA	NA	NA	NA	NA	NA	NA	171331045	171332318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_171331000_171332300
ENSMUST00000081551.14	chr1	+	1506	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	0	1041	0	-1041	multi-exon	TRUE	canonical	NA	NA	NA	NA	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCTTGGATCTCTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	4928036	4967087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
ENSMUST00000081591.7	chr2	+	2111	10	FSM	ENSMUSG00000027091.15	ENSMUST00000081591.7	2111	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	757	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGGCCTTTTTCTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	83474778	83494966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352_83488506_83488873_83488966_83490401_83490585_83491490_83491638_83491776_83491879_83492492_83492617_83494163
ENSMUST00000081649.10	chr7	-	655	2	FSM	ENSMUSG00000060591.10	ENSMUST00000081649.10	655	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCACTGTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	140535900	140534749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_140535087_140535582
ENSMUST00000081726.13	chr4	+	2324	17	FSM	ENSMUSG00000028886.16	ENSMUST00000081726.13	5160	17	0	2836	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACTGGACAGGACAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	132366356	132449240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_132366467_132384003_132384100_132389205_132389250_132394465_132394546_132397499_132397567_132400206_132400344_132417015_132417102_132420272_132420457_132422057_132422195_132426340_132426425_132428331_132428422_132431662_132431722_132434273_132434435_132437255_132437371_132439152_132439275_132446522_132446624_132448589
ENSMUST00000081739.2	chr19	+	3194	1	NIC	ENSMUSG00000064032.3	novel	3332	2	NA	NA	821	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTATTAAGGTTATCTTG	NA	NA	NA	NA	NA	NA	NA	NA	10176552	10179746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_+_10176600_10179700
ENSMUST00000081776.11	chr15	-	1530	3	FSM	ENSMUSG00000057346.13	ENSMUST00000081776.11	1530	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTGTCTGACTCGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	77295335	77287988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_77289283_77289780_77289907_77295225
ENSMUST00000081790.15	chr19	-	5792	9	FSM	ENSMUSG00000033417.17	ENSMUST00000081790.15	5792	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGGTTTGATACCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	60569463	60513133	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_60517526_60517902_60517947_60522573_60522713_60525851_60525942_60531447_60531551_60533883_60533980_60551599_60551703_60552605_60552733_60568765
ENSMUST00000081794.7	chr11	+	2081	3	FSM	ENSMUSG00000020346.17	ENSMUST00000081794.7	2976	3	0	895	0	-863	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTCTCCCTCTTGGATC	NA	NA	NA	NA	NA	NA	NA	NA	49135072	49152959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_49135167_49136019_49136445_49151397
ENSMUST00000081834.10	chrX	+	2090	5	FSM	ENSMUSG00000049047.12	ENSMUST00000081834.10	3327	5	12	1225	0	94	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATTTAGAGCATACATTC	NA	NA	NA	NA	NA	NA	NA	NA	133657355	133660949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_133657480_133658012_133658092_133658480_133658543_133658825_133658896_133659194
ENSMUST00000081840.6	chr6	-	517	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATGTTTTTGGTAAC	NA	NA	NA	NA	NA	NA	NA	NA	115785708	115782465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
ENSMUST00000081848.13	chr3	-	1237	10	FSM	ENSMUSG00000059743.13	ENSMUST00000081848.13	1237	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	89009266	89000894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89009168
ENSMUST00000081869.7	chr2	-	3255	2	FSM	ENSMUSG00000059555.7	ENSMUST00000081869.7	3255	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACCCACCTTCTTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	25086898	25082977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_25085938_25086603
ENSMUST00000081932.13-1	chr2	+	3584	14	FSM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	56	821	0	-821	multi-exon	TRUE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTCTGTATCCATATTG	NA	NA	NA	NA	NA	NA	NA	NA	3285304	3329093	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_3285444_3305848_3305985_3306433_3306477_3308019_3308070_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
ENSMUST00000081940.11	chr8	-	541	4	FSM	ENSMUSG00000090137.9	ENSMUST00000081940.11	541	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGGTGTCTAGAGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	70963067	70960915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962282_70962987
ENSMUST00000081980.7	chr11	+	1920	2	FSM	ENSMUSG00000061650.7	ENSMUST00000081980.7	1920	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	801	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATGGTTTGCCTGTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	59839031	59853031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_59839305_59851384
ENSMUST00000081987.5	chr14	-	449	1	FSM	ENSMUSG00000060377.5	ENSMUST00000081987.5	449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4373	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTTTATTTACATGTAT	NA	NA	NA	NA	NA	NA	NA	NA	99231754	99231305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_99231300_99231800
ENSMUST00000081993.3	chr15	-	612	1	FSM	ENSMUSG00000057262.3	ENSMUST00000081993.3	612	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	209	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATACCATGATATTTGTAA	NA	NA	NA	NA	NA	NA	NA	NA	52341624	52341012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_52341000_52341600
ENSMUST00000082034.13	chrX	-	4170	24	FSM	ENSMUSG00000025665.17	ENSMUST00000082034.13	4170	24	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTAGTCTTGGTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	110396479	110297889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372799_110396365
ENSMUST00000082089.14	chrX	+	2562	22	FSM	ENSMUSG00000031060.17	ENSMUST00000082089.14	2562	22	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCTTTGAAAGCAGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	20486336	20516923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
ENSMUST00000082092.5	chr11	+	345	5	FSM	ENSMUSG00000057322.13	ENSMUST00000082092.5	345	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	114559451	114563157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_114559512_114559606_114559641_114559731_114559793_114562559_114562683_114563090
ENSMUST00000082134.6	chr7	+	1109	5	FSM	ENSMUSG00000037563.16	ENSMUST00000082134.6	1109	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTCTGGCCTTTATGGT	NA	NA	NA	NA	NA	NA	NA	NA	28050076	28052580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_28050277_28050416_28050519_28051601_28051699_28051787_28051836_28051918
ENSMUST00000082409.1	chrM	+	784	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCCTTAGTATAATTAAT	NA	NA	NA	NA	NA	NA	NA	NA	8606	9390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrM_+_8600_9400
ENSMUST00000082414.1	chrM	+	1378	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	10166	11544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrM_+_10200_11500
ENSMUST00000082421.1	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	NA	NA	NA	NA	NA	NA	NA	NA	14144	15288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrM_+_14100_15300
ENSMUST00000082428.6	chr7	-	2177	1	FSM	ENSMUSG00000049091.8	ENSMUST00000082428.6	2177	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	577	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGCTAATGTTTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	126873227	126871050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126871000_126873200
ENSMUST00000082429.8	chr9	+	1072	2	FSM	ENSMUSG00000063856.9	ENSMUST00000082429.8	1072	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTGTGTCCTGTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	108216252	108217542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_108216758_108216975
ENSMUST00000082437.11	chr3	+	1077	5	FSM	ENSMUSG00000037072.17	ENSMUST00000082437.11	1514	5	288	149	21	-130	multi-exon	FALSE	canonical	NA	NA	NA	NA	1115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACCTTTGTTAAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	144276474	144303292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_144276561_144283346_144283515_144296372_144296437_144300661_144300712_144302583
ENSMUST00000082437.11-1	chr3	+	1091	5	FSM	ENSMUSG00000037072.17	ENSMUST00000082437.11	1514	5	0	423	0	212	multi-exon	FALSE	canonical	NA	NA	NA	NA	893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAATAGAGGAAGTGGATA	NA	NA	NA	NA	NA	NA	NA	NA	144276186	144303018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_144276561_144283346_144283515_144296372_144296437_144300661_144300712_144302583
ENSMUST00000082907.3	chr5	+	134	1	FSM	ENSMUSG00000064841.3	ENSMUST00000082907.3	134	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTCGAGATTCTGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	121343072	121343206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_121343100_121343200
ENSMUST00000083521.3	chr11	-	92	1	FSM	ENSMUSG00000065455.3	ENSMUST00000083521.3	92	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATCTGACCATCCATAT	NA	NA	NA	NA	NA	NA	NA	NA	86474984	86474892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_86474900_86475000
ENSMUST00000083630.3	chr15	+	85	1	FSM	ENSMUSG00000065564.3	ENSMUST00000083630.3	85	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGCCCAGGGACACAGCTA	NA	NA	NA	NA	NA	NA	NA	NA	85591519	85591604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_85591500_85591600
ENSMUST00000084032.6	chr8	-	3834	23	FSM	ENSMUSG00000031555.16	ENSMUST00000084032.6	3834	23	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAACATTTACAAC	NA	NA	NA	NA	NA	NA	NA	NA	25506828	25439668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_25441027_25445947_25446016_25452875_25452902_25452954_25453105_25454918_25455052_25456664_25456771_25457164_25457246_25460601_25460786_25463044_25463151_25468443_25468640_25469438_25469532_25471966_25472139_25480282_25480417_25481266_25481349_25482089_25482260_25483059_25483132_25485125_25485192_25486670_25486867_25487758_25487836_25493273_25493353_25494794_25494854_25496192_25496291_25506700
ENSMUST00000084035.12	chr8	-	3985	22	FSM	ENSMUSG00000031555.16	ENSMUST00000084035.12	3985	22	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTCGTCCTCTTTATA	NA	NA	NA	NA	NA	NA	NA	NA	25506938	25439626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_25441027_25445947_25446016_25452929_25453105_25454918_25455052_25456664_25456771_25457164_25457246_25460601_25460786_25463044_25463151_25468443_25468640_25469438_25469532_25471966_25472139_25480282_25480417_25481266_25481349_25482089_25482260_25483059_25483132_25485125_25485192_25486670_25486867_25487758_25487836_25493273_25493353_25494794_25494854_25496192_25496291_25506700
ENSMUST00000084055.9	chr8	+	319	1	FSM	ENSMUSG00000068631.9	ENSMUST00000084055.9	319	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTGAGATGTCTTGCAAC	NA	NA	NA	NA	NA	NA	NA	NA	13946310	13946629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_13946300_13946600
ENSMUST00000084116.13	chr4	+	3722	12	FSM	ENSMUSG00000028948.17	ENSMUST00000084116.13	3722	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAATAATAACAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	152123783	152144481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_152124265_152125503_152125724_152125973_152126102_152130151_152130288_152130404_152130493_152131003_152131102_152134991_152135154_152136214_152136516_152137054_152137167_152140504_152140683_152142247_152142382_152142797
ENSMUST00000084149.10	chr4	+	1156	7	FSM	ENSMUSG00000067916.10	ENSMUST00000084149.10	2813	7	0	1657	0	-1657	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCATCTTAATATTCATC	NA	NA	NA	NA	NA	NA	NA	NA	147216494	147263379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_147216647_147219028_147219122_147224494_147224577_147249797_147249844_147260303_147260362_147261203_147261331_147262781
ENSMUST00000084171.7	chr19	+	645	1	FSM	ENSMUSG00000068466.7	ENSMUST00000084171.7	645	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTGGTTCTAGCGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	29137517	29138162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_29137500_29138200
ENSMUST00000084219.12	chr4	+	2647	10	FSM	ENSMUSG00000066037.15	ENSMUST00000084219.12	2647	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCATTGATTGGTGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	136038335	136068174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_136038401_136043671_136043796_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
ENSMUST00000084281.3	chr5	+	210	1	FSM	ENSMUSG00000072576.6	ENSMUST00000084281.3	210	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCAGCTGGGTTCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	134492093	134492303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_134492100_134492300
ENSMUST00000084299.6	chr4	+	873	5	FSM	ENSMUSG00000028291.8	ENSMUST00000084299.6	1397	5	14	510	14	-510	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTACCACCTGAATGTG	NA	NA	NA	NA	NA	NA	NA	NA	34550950	34566398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_34551274_34562311_34562456_34565127_34565278_34565933_34566006_34566214
ENSMUST00000084412.6	chr7	-	1158	3	FSM	ENSMUSG00000045777.15	ENSMUST00000084412.6	1158	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCAGCCTCTGTCCATGT	NA	NA	NA	NA	NA	NA	NA	NA	141925996	141909244	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_141909852_141924594_141925048_141925898
ENSMUST00000084434.11	chr7	+	430	5	FSM	ENSMUSG00000025508.14	ENSMUST00000084434.11	964	5	299	235	-43	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTTTAAACATTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	141027581	141031263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_141027621_141027820_141027945_141028638_141028688_141030916_141031016_141031144
ENSMUST00000084445.4	chr4	-	354	1	FSM	ENSMUSG00000066116.4	ENSMUST00000084445.4	354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCACATTTTTTAAGTA	NA	NA	NA	NA	NA	NA	NA	NA	83423775	83423421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_83423400_83423800
ENSMUST00000084497.12	chr7	+	1616	9	FSM	ENSMUSG00000030965.20	ENSMUST00000084497.12	2892	9	24	1252	24	-1252	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCACTATCATGCCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	132460977	132485588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478326_132478447_132480257_132480343_132482495_132482611_132484763
ENSMUST00000084512.11	chr8	-	2308	11	FSM	ENSMUSG00000065954.12	ENSMUST00000084512.11	6471	11	47	4116	47	931	multi-exon	TRUE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTGCTGTCTGCTGCCCCG	NA	NA	NA	NA	NA	NA	NA	NA	25691418	25648683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25691137
ENSMUST00000084525.12	chr4	-	819	4	FSM	ENSMUSG00000066149.12	ENSMUST00000084525.12	819	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGACGTCCTTAAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	62326879	62312819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_62313259_62320960_62321153_62322692_62322790_62326788
ENSMUST00000084526.12	chr4	+	672	5	FSM	ENSMUSG00000066150.13	ENSMUST00000084526.12	3718	5	0	3046	0	-3046	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGCTGGGACGGGATACT	NA	NA	NA	NA	NA	NA	NA	NA	62278963	62306960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_62279081_62303728_62303916_62304327_62304401_62306103_62306273_62306834
ENSMUST00000084530.9	chr4	+	1820	4	FSM	ENSMUSG00000066152.12	ENSMUST00000084530.9	1820	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGTTGGTCCGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	62204685	62216648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_62204812_62210868_62210936_62214123_62214314_62215211
ENSMUST00000084563.11	chr7	+	1054	3	FSM	ENSMUSG00000106715.4	ENSMUST00000084563.11	1054	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGTCTAATTGCTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	127160561	127164442	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_127160958_127162293_127162465_127163955
ENSMUST00000084598.6	chr7	-	483	1	FSM	ENSMUSG00000066180.6	ENSMUST00000084598.6	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGGACACAAAGAAATAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	125899088	125898605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_125898600_125899100
ENSMUST00000084614.5	chr3	-	537	1	FSM	ENSMUSG00000070343.4	ENSMUST00000084614.5	537	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1313	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTGATCCAAAAAGCTAAT	NA	NA	NA	NA	NA	NA	NA	NA	146545102	146544565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_146544600_146545100
ENSMUST00000084721.8	chr13	+	1222	3	FSM	ENSMUSG00000078941.10	ENSMUST00000084721.8	1222	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTGGTACTTTGGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	100787850	100792567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_100787954_100790698_100790792_100791541
ENSMUST00000084733.7	chr9	+	437	3	FSM	ENSMUSG00000066233.7	ENSMUST00000084733.7	1041	3	0	604	0	-604	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGGGAGGGGTGTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	122850390	122851948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_122850636_122851230_122851378_122851903
ENSMUST00000084747.6	chr4	+	4295	6	FSM	ENSMUSG00000028278.15	ENSMUST00000084747.6	4295	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGAAGTGGGGTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	32983453	33022180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_32983608_33004150_33004351_33005133_33005249_33007069_33007213_33012903_33013053_33018646
ENSMUST00000084771.3	chr10	+	1559	7	FSM	ENSMUSG00000071072.13	ENSMUST00000084771.3	1559	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTTGGAAGATTTCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	127894879	127912847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127910090_127910154_127911206_127911232_127911935
ENSMUST00000084838.14	chr16	+	5250	10	FSM	ENSMUSG00000055447.20	ENSMUST00000084838.14	5250	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTGGGTTATTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	49676007	49735373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49731231
ENSMUST00000084881.5	chr9	-	1674	7	FSM	ENSMUSG00000032431.7	ENSMUST00000084881.5	1674	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1753	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCTCTCCGTCCTTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	114219743	114204201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_114204651_114207107_114207192_114208977_114209124_114210653_114210783_114213763_114213936_114215269_114215420_114219199
ENSMUST00000084882.9	chr12	+	1439	7	FSM	ENSMUSG00000006356.11	ENSMUST00000084882.9	1439	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10499	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCAGTGTCGTGTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	113103855	113109126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_113104235_113107078_113107232_113107634_113107776_113107848_113107918_113108018_113108114_113108429_113108488_113108582
ENSMUST00000084915.11	chr4	-	2884	14	FSM	ENSMUSG00000028207.19	ENSMUST00000084915.11	2884	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGATTGTCATTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	9669162	9575266	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
ENSMUST00000084937.11	chr7	+	2092	7	FSM	ENSMUSG00000045411.17	ENSMUST00000084937.11	2092	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	43896210	43901739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_43896248_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUST00000085018.6	chr9	+	1251	6	FSM	ENSMUSG00000032599.13	ENSMUST00000085018.6	1846	6	70	525	-67	-520	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGGACCTCTCCGAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	108673262	108683011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_108673596_108675308_108675378_108675469_108675693_108676440_108676617_108681740_108681917_108682737
ENSMUST00000085163.4	chr13	+	300	1	FSM	ENSMUSG00000066407.4	ENSMUST00000085163.4	300	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	587	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGTTTCTATTT	NA	NA	NA	NA	NA	NA	NA	NA	73465962	73466262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_73466000_73466300
ENSMUST00000085245.7	chr12	+	5201	7	FSM	ENSMUSG00000048833.10	ENSMUST00000085245.7	5201	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTATGTGAGTGGCTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	80691012	80730111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_80691751_80709243_80709353_80713308_80713510_80719999_80720069_80722622_80722709_80723905_80724041_80726248
ENSMUST00000085254.7	chr12	-	1673	7	FSM	ENSMUSG00000066441.15	ENSMUST00000085254.7	1673	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGCTGTTTCTCAGCCTA	NA	NA	NA	NA	NA	NA	NA	NA	79237735	79222324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_79223025_79229426_79229617_79231897_79232108_79233187_79233293_79235254_79235411_79235762_79235882_79237542
ENSMUST00000085256.8	chr9	+	557	3	FSM	ENSMUSG00000066442.18	ENSMUST00000085256.8	816	3	0	259	0	-259	multi-exon	TRUE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTAAAGAGCAGATCTG	NA	NA	NA	NA	NA	NA	NA	NA	89093209	89122034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_89093365_89097261_89097524_89121894
ENSMUST00000085365.6	chr7	-	801	1	FSM	ENSMUSG00000062758.7	ENSMUST00000085365.6	801	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1479	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACACTGAATTTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	131216717	131215916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_131215900_131216700
ENSMUST00000085368.4	chr12	+	882	1	FSM	ENSMUSG00000066487.4	ENSMUST00000085368.4	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	547	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	59127804	59128686	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_59127800_59128700
ENSMUST00000085404.10	chr12	-	1012	4	FSM	ENSMUSG00000020956.15	ENSMUST00000085404.10	1012	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCCATGTTTTCATCAGA	NA	NA	NA	NA	NA	NA	NA	NA	52053284	52035094	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_52035639_52046385_52046657_52051661_52051732_52053157
ENSMUST00000085453.6	chr9	+	1773	5	FSM	ENSMUSG00000041696.15	ENSMUST00000085453.6	2390	5	9	608	0	-608	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTACATAAACTATTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	65305815	65319379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_65305950_65308200_65308258_65314858_65314933_65315591_65315783_65318062
ENSMUST00000085546.13	chr5	-	2838	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACGTCTTTGTAACTTT	NA	NA	NA	NA	NA	NA	NA	NA	148989850	148983511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
ENSMUST00000085651.12	chr9	+	2024	8	FSM	ENSMUSG00000032336.18	ENSMUST00000085651.12	2024	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	58489574	58560161	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557779_58557802_58558540_58558616_58559141
ENSMUST00000085664.6	chr10	+	1800	3	FSM	ENSMUSG00000096795.5	ENSMUST00000085664.6	1800	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAACCACACTGAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	81554752	81557302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_81554880_81555078_81555140_81555690
ENSMUST00000085679.13	chr5	+	2054	10	FSM	ENSMUSG00000029622.17	ENSMUST00000085679.13	3105	10	43	1008	-20	618	multi-exon	FALSE	canonical	NA	NA	NA	NA	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTACATCAAAGATTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	145051067	145065501	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
ENSMUST00000085711.6	chr9	+	627	1	FSM	ENSMUSG00000066626.6	ENSMUST00000085711.6	627	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCATGCATAGTGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	57241410	57242037	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_57241400_57242000
ENSMUST00000085720.3	chr12	+	315	1	FSM	ENSMUSG00000066629.3	ENSMUST00000085720.3	315	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	856	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGAACCCTCCCCCAATA	NA	NA	NA	NA	NA	NA	NA	NA	12962022	12962337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_12962000_12962300
ENSMUST00000085741.2	chr12	+	1000	3	FSM	ENSMUSG00000066637.3	ENSMUST00000085741.2	1000	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAATAAAACAAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	9079996	9086394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_9080197_9084921_9085089_9085761
ENSMUST00000085741.2-0	chr12	+	818	3	FSM	ENSMUSG00000066637.3	ENSMUST00000085741.2	1000	3	31	151	0	-151	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTCAAGTCATAAACTCT	NA	NA	NA	NA	NA	NA	NA	NA	9080027	9086243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_9080197_9084921_9085089_9085761
ENSMUST00000085851.12	chr7	-	1243	6	FSM	ENSMUSG00000030595.16	ENSMUST00000085851.12	1243	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCTTCCTGCTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	28465939	28458456	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_28458630_28459251_28459522_28459601_28459691_28461026_28461361_28461450_28461557_28465668
ENSMUST00000085852.11	chr5	-	867	5	FSM	ENSMUSG00000058291.15	ENSMUST00000085852.11	3318	5	20	2431	2	-1295	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCAAAATCCTTAGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	138618000	138605676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138615316_138615430_138617870
ENSMUST00000085984.11	chr5	-	1516	13	FSM	ENSMUSG00000005378.18	ENSMUST00000085984.11	1516	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTCCCTGGCCCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	135093520	135081810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092737_135092776_135092867_135093030_135093377
ENSMUST00000086013.4	chr7	-	645	1	FSM	ENSMUSG00000066724.4	ENSMUST00000086013.4	645	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6497	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAAAAATAAGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	23646715	23646070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_23646100_23646700
ENSMUST00000086046.10	chr5	+	2112	10	FSM	ENSMUSG00000029432.13	ENSMUST00000086046.10	2112	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	921	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTGCACGATTGAGACC	NA	NA	NA	NA	NA	NA	NA	NA	129802126	129835391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_129802286_129816535_129816676_129816781_129816828_129821768_129821864_129822279_129822351_129823390_129823532_129825065_129825098_129830289_129830385_129831905_129831990_129834142
ENSMUST00000086112.8-1	chr7	+	494	5	FSM	ENSMUSG00000008036.12	ENSMUST00000086112.8	836	5	62	280	28	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGGCTCTGCCCAGCCCGG	NA	NA	NA	NA	NA	NA	NA	NA	16472396	16482939	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_16472464_16477143_16477294_16481185_16481300_16482613_16482674_16482836
ENSMUST00000086199.12	chr1	+	2064	7	FSM	ENSMUSG00000026473.17	ENSMUST00000086199.12	2792	7	0	728	0	-728	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGGTTTCCCTGCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	153775689	153784741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_153775806_153778679_153778859_153780282_153780445_153782094_153782242_153782765_153782894_153783031_153783232_153783609
ENSMUST00000086236.2	chr9	-	78	1	FSM	ENSMUSG00000066809.2	ENSMUST00000086236.2	78	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCCCGTGCACCTACGA	NA	NA	NA	NA	NA	NA	NA	NA	25012777	25012699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_25012700_25012800
ENSMUST00000086247.6	chr5	+	712	4	FSM	ENSMUSG00000029468.18	ENSMUST00000086247.6	712	4	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCCAGAATTGGTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	122782071	122793325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_122782262_122790789_122790959_122792223_122792293_122793041
ENSMUST00000086349.5	chr7	+	456	2	FSM	ENSMUSG00000051184.8	ENSMUST00000086349.5	1142	2	26	660	26	-655	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTACCTCTCTGACCTGG	NA	NA	NA	NA	NA	NA	NA	NA	5018494	5020826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_5018560_5020435
ENSMUST00000086361.12	chr9	+	958	7	FSM	ENSMUSG00000057191.14	ENSMUST00000086361.12	1310	7	52	300	27	-293	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCCAGATCACCGGAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	21437523	21456329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_21437604_21440058_21440380_21447203_21447294_21450382_21450411_21451137_21451182_21451881_21451920_21455972
ENSMUST00000086430.5	chr1	-	6625	54	FSM	ENSMUSG00000026042.17	ENSMUST00000086430.5	6625	54	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAGTATGAAATTAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	45542442	45413480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_45415391_45415798_45416039_45417466_45417655_45419159_45419452_45421275_45421384_45422326_45422381_45422750_45422859_45423559_45423614_45424121_45424230_45425992_45426047_45427372_45427481_45428531_45428640_45429191_45429354_45430235_45430290_45430821_45430876_45430983_45431092_45431463_45431518_45431974_45432029_45432212_45432267_45433541_45433596_45433880_45433989_45435220_45435320_45435609_45435655_45439980_45440035_45441238_45441293_45442275_45442330_45442419_45442474_45442580_45442680_45443360_45443415_45443892_45443992_45444399_45444454_45445399_45445508_45445703_45445758_45446181_45446281_45446392_45446438_45446861_45446961_45450593_45450648_45452629_45452675_45453907_45453962_45456086_45456132_45456747_45456802_45457658_45457713_45460380_45460435_45461103_45461158_45461545_45461600_45462841_45462887_45466147_45466226_45469057_45469169_45474051_45474106_45475538_45475572_45476623_45476657_45478029_45478044_45481806_45482029_45541980
ENSMUST00000086458.10	chr9	-	921	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086458.10	2056	3	378	757	358	217	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCAGATTGTGTCCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	20555685	20549841	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_20550495_20553319_20553393_20555490
ENSMUST00000086461.13	chr5	-	2796	11	FSM	ENSMUSG00000029363.15	ENSMUST00000086461.13	2796	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	548	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACCGTCATGCACCGAG	NA	NA	NA	NA	NA	NA	NA	NA	117527112	117516167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
ENSMUST00000086508.5	chr13	+	478	1	FSM	ENSMUSG00000094772.3	ENSMUST00000086508.5	478	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAAAGGCTCCTGCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	4664180	4664658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_4664200_4664700
ENSMUST00000086519.12	chr5	+	1358	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34438	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCCAAGCCTGGCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	115697525	115701786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ENSMUST00000086535.12	chr1	+	1049	5	FSM	ENSMUSG00000073702.12	ENSMUST00000086535.12	1049	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGGTTTGAACATGTTT	NA	NA	NA	NA	NA	NA	NA	NA	39406922	39410992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUST00000086596.2	chr1	-	378	1	FSM	ENSMUSG00000094122.2	ENSMUST00000086596.2	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTACTCATGTCAAATAAAG	NA	NA	NA	NA	NA	NA	NA	NA	129729501	129729123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_129729100_129729500
ENSMUST00000086635.9	chr5	+	1437	12	FSM	ENSMUSG00000050017.12	ENSMUST00000086635.9	2761	12	0	1324	0	-1324	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGCCAGGTGTGGACCAG	NA	NA	NA	NA	NA	NA	NA	NA	111478628	111534901	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494441_111494985_111494994_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
ENSMUST00000086725.6	chr1	+	2858	2	FSM	ENSMUSG00000067017.6	ENSMUST00000086725.6	2858	2	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	2698	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTATCCATGCCACACTG	NA	NA	NA	NA	NA	NA	NA	NA	105383695	105386554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_105384509_105384509
ENSMUST00000086764.7	chr19	+	396	1	FSM	ENSMUSG00000067038.7	ENSMUST00000086764.7	396	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	178	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATTTTGGCTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	59310802	59311198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_59310800_59311200
ENSMUST00000086833.13	chr5	+	1411	8	FSM	ENSMUSG00000029304.15	ENSMUST00000086833.13	1411	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAGTCTGGTGGTGTCAA	NA	NA	NA	NA	NA	NA	NA	NA	104582983	104588914	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104584766_104584770_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUST00000086844.10	chr11	-	2471	10	FSM	ENSMUSG00000000782.17	ENSMUST00000086844.10	2471	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATTTTTGTATTGTAA	NA	NA	NA	NA	NA	NA	NA	NA	52173398	52143197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_52144790_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52149679_52149773_52151357_52151449_52152339_52152452_52172948_52173074_52173380
ENSMUST00000086851.2	chr1	-	1335	4	FSM	ENSMUSG00000067071.9	ENSMUST00000086851.2	1335	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTGTCCAATGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	91340944	91339204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_91340205_91340442_91340525_91340614_91340702_91340778
ENSMUST00000086869.6	chr17	+	1660	8	FSM	ENSMUSG00000003208.10	ENSMUST00000086869.6	1660	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGTGTTGGAGTCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	56266173	56275285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_56266262_56267712_56267814_56269018_56269164_56271129_56271265_56271485_56271668_56272168_56272290_56273507_56273638_56274527
ENSMUST00000086880.11	chrX	+	2024	5	FSM	ENSMUSG00000049047.12	ENSMUST00000086880.11	2024	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTAGTCTGTCTTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	133657355	133660855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_133657480_133657984_133658092_133658480_133658543_133658825_133658896_133659194
ENSMUST00000086884.5	chrX	+	1441	5	FSM	ENSMUSG00000049047.12	ENSMUST00000086884.5	3488	5	-40	2087	0	-738	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACTTCAGGTTCTGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	133657355	133660117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_133657635_133657984_133658092_133658480_133658543_133658825_133658896_133659194
ENSMUST00000087052.11	chr4	-	1292	8	FSM	ENSMUSG00000028218.20	ENSMUST00000087052.11	1292	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTACATAGTCTTTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	12171995	12153723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_12153979_12155648_12155769_12157650_12157765_12164087_12164193_12168228_12168325_12168964_12169034_12170983_12171219_12171697
ENSMUST00000087155.5	chr19	+	2614	1	FSM	ENSMUSG00000067199.5	ENSMUST00000087155.5	2614	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGCTTTTATTTTGTACT	NA	NA	NA	NA	NA	NA	NA	NA	41818408	41821022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_41818400_41821000
ENSMUST00000087215.7	chr1	+	1731	8	FSM	ENSMUSG00000026174.10	ENSMUST00000087215.7	3268	8	2	1535	2	-1535	multi-exon	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTACTTTGGATTTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	74545218	74568466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_74545621_74556228_74556409_74558059_74558176_74561476_74561587_74562662_74562773_74566150_74566250_74566750_74566843_74567844
ENSMUST00000087225.6	chr1	+	2859	9	FSM	ENSMUSG00000026179.15	ENSMUST00000087225.6	2859	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGTCTGAGCTCTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	74371768	74392845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_74371951_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
ENSMUST00000087228.11	chr5	+	1978	17	FSM	ENSMUSG00000029208.17	ENSMUST00000087228.11	3433	17	27	1428	0	-55	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACGCTTTCATAAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	69714330	69729019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_69714509_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69718996_69719201_69720425_69720566_69721866_69721991_69722772_69722906_69723703_69723848_69724470_69724605_69725738_69725841_69726571_69726692_69728103_69728141_69728926
ENSMUST00000087324.7	chr5	+	1849	14	FSM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	0	520	0	-520	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTTTTCCAGCCACAAAA	NA	NA	NA	NA	NA	NA	NA	NA	64250292	64285174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
ENSMUST00000087328.4	chr17	-	2967	1	FSM	ENSMUSG00000091971.4	ENSMUST00000087328.4	2967	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCCGGGGCTGAGGTC	NA	NA	NA	NA	NA	NA	NA	NA	35191132	35188165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_35188200_35191100
ENSMUST00000087342.13	chr17	-	392	4	FSM	ENSMUSG00000067288.14	ENSMUST00000087342.13	392	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2037	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTTTCCAGCAGCGTC	NA	NA	NA	NA	NA	NA	NA	NA	34043536	34042009	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34042091_34042170_34042305_34043272_34043321_34043407
ENSMUST00000087351.9	chr15	+	1737	10	FSM	ENSMUSG00000046434.17	ENSMUST00000087351.9	1737	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	NA	NA	NA	NA	NA	NA	NA	103148880	103153382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
ENSMUST00000087409.10	chr2	-	2577	3	FSM	ENSMUSG00000027583.14	ENSMUST00000087409.10	2577	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTCTGCTCTCTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	181101219	181052337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_181053774_181065211_181066182_181101048
ENSMUST00000087467.12	chr8	+	880	5	FSM	ENSMUSG00000003573.16	ENSMUST00000087467.12	880	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCTTTTTTATTTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	70735476	70739180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70738945
ENSMUST00000087511.10	chr5	+	1291	5	FSM	ENSMUSG00000067365.12	ENSMUST00000087511.10	1291	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	450	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTAATGCAAATTTGG	NA	NA	NA	NA	NA	NA	NA	NA	38417528	38426978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38426402
ENSMUST00000087514.9	chr5	+	1563	9	FSM	ENSMUSG00000067367.10	ENSMUST00000087514.9	1563	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTATGATAACAAATTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	38377813	38391650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_38377980_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
ENSMUST00000087521.13	chr1	+	2344	7	FSM	ENSMUSG00000026036.18	ENSMUST00000087521.13	3769	7	0	1425	0	-235	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGATTACTACCCAGCAT	NA	NA	NA	NA	NA	NA	NA	NA	58484309	58501190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_58484794_58486792_58487249_58489545_58489709_58491247_58491375_58494755_58494895_58496938_58497023_58500299
ENSMUST00000087543.5	chr17	-	1580	1	FSM	ENSMUSG00000067370.5	ENSMUST00000087543.5	1580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCAGCGTCTTCACCAG	NA	NA	NA	NA	NA	NA	NA	NA	34170462	34168882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34168900_34170500
ENSMUST00000087563.7	chr2	+	1346	6	FSM	ENSMUSG00000039069.20	ENSMUST00000087563.7	1346	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	179720415	179727695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
ENSMUST00000087675.9	chr6	+	1113	9	FSM	ENSMUSG00000030225.12	ENSMUST00000087675.9	1729	9	33	583	15	-146	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAGGGAAACAAACCAG	NA	NA	NA	NA	NA	NA	NA	NA	137731588	137814309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_137731637_137755121_137755220_137756507_137756656_137757727_137757824_137759926_137760062_137773751_137773881_137807190_137807304_137813731_137813882_137814113
ENSMUST00000087865.4	chr6	-	1684	9	FSM	ENSMUSG00000030189.16	ENSMUST00000087865.4	1684	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTGTAACTAGTGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	131365439	131341817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_131342369_131344727_131344827_131345351_131345524_131347285_131347378_131356320_131356444_131357838_131357929_131360463_131360498_131361465_131361530_131364980
ENSMUST00000088041.11	chr2	-	1711	10	FSM	ENSMUSG00000017969.14	ENSMUST00000088041.11	1711	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTTAGGTGAGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	167082509	167033724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_167033906_167048653_167048806_167049101_167049284_167050100_167050270_167056727_167056910_167063128_167063281_167065904_167066049_167067195_167067375_167069381_167069506_167082263
ENSMUST00000088092.6	chr19	-	2736	3	FSM	ENSMUSG00000071660.11	ENSMUST00000088092.6	1585	3	629	-1780	259	-441	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGACTAGCCAGACTTAC	NA	NA	NA	NA	NA	NA	NA	NA	8796029	8786879	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_8789203_8793217_8793401_8795799
ENSMUST00000088200.13	chr15	+	1376	5	FSM	ENSMUSG00000044217.18	ENSMUST00000088200.13	1376	5	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATAGCCCTGTTTATCTC	NA	NA	NA	NA	NA	NA	NA	NA	99488729	99492489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_99488846_99488978_99489516_99490542_99490708_99491126_99491211_99492015
ENSMUST00000088248.13	chr2	+	967	6	FSM	ENSMUSG00000001403.14	ENSMUST00000088248.13	967	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	NA	NA	NA	NA	NA	NA	NA	164611817	164614827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_164612001_164612286_164612315_164613212_164613300_164613773_164613979_164614086_164614147_164614423
ENSMUST00000088287.10	chr1	+	4322	8	FSM	ENSMUSG00000004768.15	ENSMUST00000088287.10	4322	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATTGTGTGTGGTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	33758975	33781645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_33759255_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775880_33775964_33777368_33777462_33778333
ENSMUST00000088299.6	chr5	-	309	1	FSM	ENSMUSG00000067719.6	ENSMUST00000088299.6	309	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	239	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGACCAATCTTTAACTT	NA	NA	NA	NA	NA	NA	NA	NA	24786860	24786551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_24786600_24786900
ENSMUST00000088307.5	chr17	+	629	2	FSM	ENSMUSG00000067722.5	ENSMUST00000088307.5	3030	2	0	2401	0	-2401	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTTGCCGAACACCAATG	NA	NA	NA	NA	NA	NA	NA	NA	25403527	25404235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_25403615_25403693
ENSMUST00000088313.5	chrX	+	701	6	FSM	ENSMUSG00000001964.15	ENSMUST00000088313.5	1338	6	0	637	0	-94	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCGAGGACTCAGCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	73298435	73304517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73304387
ENSMUST00000088464.12	chr17	-	2504	20	FSM	ENSMUSG00000052752.16	ENSMUST00000088464.12	2504	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	24738182	24727823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104
ENSMUST00000088464.12-0	chr17	-	2151	20	FSM	ENSMUSG00000052752.16	ENSMUST00000088464.12	2504	20	0	353	0	-353	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGGCCCCGCTGTTACT	NA	NA	NA	NA	NA	NA	NA	NA	24738182	24728176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104
ENSMUST00000088480.4	chr9	-	615	1	FSM	ENSMUSG00000061167.10	ENSMUST00000088480.4	615	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	188	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACGTGATATTTGTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	22097517	22096902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_22096900_22097500
ENSMUST00000088512.13	chr17	+	1816	8	FSM	ENSMUSG00000034681.18	ENSMUST00000088512.13	1816	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGTTTTACTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	24633636	24644875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_24633709_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUST00000088610.11	chr2	+	569	3	FSM	ENSMUSG00000067847.14	ENSMUST00000088610.11	569	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCTATTTTTACCTAGTA	NA	NA	NA	NA	NA	NA	NA	NA	155985958	155987717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_155986201_155986378_155986510_155987521
ENSMUST00000088652.6	chrX	+	1465	10	FSM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	0	1345	0	-1345	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGGCATTTGAAGAAACT	NA	NA	NA	NA	NA	NA	NA	NA	56098974	56111198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_56099126_56099313_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
ENSMUST00000088673.5	chr17	-	531	4	FSM	ENSMUSG00000067882.15	ENSMUST00000088673.5	531	4	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGAGCAACCTCACCACTT	NA	NA	NA	NA	NA	NA	NA	NA	23772462	23770046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_23770155_23770980_23771085_23771904_23772082_23772320
ENSMUST00000088779.5	chrX	-	1195	1	FSM	ENSMUSG00000067925.5	ENSMUST00000088779.5	1195	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTCTTACTTAGTATAG	NA	NA	NA	NA	NA	NA	NA	NA	52645649	52644454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_52644500_52645600
ENSMUST00000088785.6	chr7	-	1709	4	FSM	ENSMUSG00000078768.3	ENSMUST00000088785.6	1709	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTGTGTGGCAGTGTAA	NA	NA	NA	NA	NA	NA	NA	NA	29789952	29776761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_29778044_29780515_29780643_29786524_29786585_29789712
ENSMUST00000088811.7	chr17	+	3800	5	FSM	ENSMUSG00000067942.7	ENSMUST00000088811.7	3800	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTTCTTTTGTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	21229202	21249123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_21229249_21231937_21232035_21240333_21240461_21240967_21241097_21245722
ENSMUST00000089011.6	chr16	+	2339	2	FSM	ENSMUSG00000037972.8	ENSMUST00000089011.6	2872	2	0	533	0	-533	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGGGTCTTTCAAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	10884193	10892316	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_10884312_10890095
ENSMUST00000089022.9	chr6	+	2523	12	FSM	ENSMUSG00000060477.15	ENSMUST00000089022.9	2974	12	8	443	8	-443	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAACAGAGCTGCTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	113615496	113671527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_113615603_113624599_113624783_113647159_113647255_113649699_113649901_113649983_113650049_113652591_113652707_113653547_113653658_113655607_113655804_113659693_113659757_113663718_113663920_113667743_113668033_113670628
ENSMUST00000089024.13	chr17	+	1902	11	FSM	ENSMUSG00000068039.14	ENSMUST00000089024.13	1902	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	13135215	13143443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_13135517_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ENSMUST00000089027.3	chr2	+	2476	18	FSM	ENSMUSG00000068040.11	ENSMUST00000089027.3	3896	18	0	1420	0	-1420	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTTGGGTTTTTTGTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	153003222	153050966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
ENSMUST00000089049.4	chr14	+	539	3	FSM	ENSMUSG00000045211.6	ENSMUST00000089049.4	3926	3	210	3177	0	-887	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGGTCTCCCTGCCCACAC	NA	NA	NA	NA	NA	NA	NA	NA	70815286	70816834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_70815551_70816351_70816566_70816773
ENSMUST00000089052.11	chr7	-	2344	9	FSM	ENSMUSG00000070426.13	ENSMUST00000089052.11	2344	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTGGACACGCATTTGC	NA	NA	NA	NA	NA	NA	NA	NA	101714676	101668358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714473
ENSMUST00000089059.9	chr2	+	1743	13	FSM	ENSMUSG00000019188.17	ENSMUST00000089059.9	1743	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGAGCTCTCAGCAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	152511407	152546956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152545914_152546115_152546541
ENSMUST00000089119.13	chr17	+	1783	9	FSM	ENSMUSG00000094724.9	ENSMUST00000089119.13	1783	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	478	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTCTGGCTAGTGCGCAG	NA	NA	NA	NA	NA	NA	NA	NA	7245993	7266097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_7246498_7248506_7248568_7251537_7251591_7252454_7252513_7256120_7256192_7259079_7259194_7262027_7262074_7263832_7263908_7265296
ENSMUST00000089157.11	chr15	-	1202	6	FSM	ENSMUSG00000068101.12	ENSMUST00000089157.11	1202	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	598	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	82128949	82117979	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823
ENSMUST00000089217.11	chrX	+	4044	26	FSM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCTAAGTTCGCATGTT	NA	NA	NA	NA	NA	NA	NA	NA	20524564	20549418	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
ENSMUST00000089221.3	chr17	-	720	1	FSM	ENSMUSG00000068141.6	ENSMUST00000089221.3	720	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	807	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGAGCCCTTTTTACCGTG	NA	NA	NA	NA	NA	NA	NA	NA	3095008	3094288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_3094300_3095000
ENSMUST00000089287.7	chr6	-	2257	18	FSM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTTAAAGTATATCAAT	NA	NA	NA	NA	NA	NA	NA	NA	97182608	97160967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
ENSMUST00000089332.5	chr16	-	789	4	FSM	ENSMUSG00000068196.6	ENSMUST00000089332.5	5108	4	22	4297	22	-2087	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCTCCAGGACCTCATGG	NA	NA	NA	NA	NA	NA	NA	NA	57575078	57448917	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_57449181_57452673_57453005_57498699_57498819_57575002
ENSMUST00000089377.6	chr15	+	800	4	FSM	ENSMUSG00000068220.7	ENSMUST00000089377.6	800	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	62911	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATGATGACACATACTT	NA	NA	NA	NA	NA	NA	NA	NA	78810924	78814665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_78811005_78812169_78812250_78813832_78814005_78814197
ENSMUST00000089402.10	chrX	-	1839	13	FSM	ENSMUSG00000031169.14	ENSMUST00000089402.10	1839	13	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGCTCGGTTTTTTGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	8072740	8060088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
ENSMUST00000089403.10	chrX	-	1854	14	FSM	ENSMUSG00000031169.14	ENSMUST00000089403.10	1854	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGCTCGGTTTTTTGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	8072740	8060088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8067896_8067912_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
ENSMUST00000089430.6	chr4	-	504	1	FSM	ENSMUSG00000068240.6	ENSMUST00000089430.6	504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2387	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATCCAAGGCTACATC	NA	NA	NA	NA	NA	NA	NA	NA	3973595	3973091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_3973100_3973600
ENSMUST00000089452.6	chr15	-	1527	3	FSM	ENSMUSG00000057346.13	ENSMUST00000089452.6	1527	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTGTCTGACTCGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	77295234	77287988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_77289283_77289780_77289907_77295127
ENSMUST00000089501.5	chr6	-	1209	1	FSM	ENSMUSG00000068262.5	ENSMUST00000089501.5	1209	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCCAGGACCACTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	87743186	87741977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_87742000_87743200
ENSMUST00000089506.12	chr2	+	1432	4	FSM	ENSMUSG00000068264.12	ENSMUST00000089506.12	1432	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTCTTTTTGTGCG	NA	NA	NA	NA	NA	NA	NA	NA	131052359	131055434	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_131052602_131053182_131053394_131054366_131054657_131054745
ENSMUST00000089549.8	chr14	-	916	5	FSM	ENSMUSG00000022156.9	ENSMUST00000089549.8	916	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTGCATAGAGCTGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	56358082	56355082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_56355327_56355707_56355969_56356154_56356291_56356754_56356906_56357958
ENSMUST00000089558.7	chr6	+	1055	4	FSM	ENSMUSG00000057278.9	ENSMUST00000089558.7	1055	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGGCAGCAGGCAGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	86348285	86356310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_86348597_86352658_86352682_86353476_86353602_86355714
ENSMUST00000089680.10	chr15	-	973	8	FSM	ENSMUSG00000055762.17	ENSMUST00000089680.10	973	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCCGCCTCTTGTGTTAC	NA	NA	NA	NA	NA	NA	NA	NA	75781168	75767338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75769074_75769132_75772980_75773102_75781093
ENSMUST00000089785.5	chr15	+	483	1	FSM	ENSMUSG00000068397.5	ENSMUST00000089785.5	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	68181667	68182150	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_68181700_68182200
ENSMUST00000089825.13	chr2	-	1631	15	ISM	ENSMUSG00000027201.17	ENSMUST00000067780.10	2999	16	6787	1092	6750	-1092	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCTAGTAAAAGTCATTT	NA	NA	NA	NA	NA	NA	NA	NA	124958793	124930753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_124930958_124937627_124937680_124937831_124938041_124939482_124939555_124939896_124939996_124940369_124940439_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124955962_124955971_124957357_124957411_124958584
ENSMUST00000089950.11	chr3	-	1381	9	FSM	ENSMUSG00000038975.15	ENSMUST00000089950.11	1381	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	153618646	153612925	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618570
ENSMUST00000090002.10	chr6	-	1662	12	FSM	ENSMUSG00000004980.17	ENSMUST00000090002.10	1662	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	NA	NA	NA	NA	NA	NA	NA	51446825	51438103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUST00000090019.10	chr6	-	4039	22	FSM	ENSMUSG00000029822.16	ENSMUST00000090019.10	4039	22	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCAGTGAGATCGGCTCGG	NA	NA	NA	NA	NA	NA	NA	NA	50347195	50272666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_50274142_50276295_50276419_50277903_50278031_50279996_50280142_50285270_50285416_50286292_50286372_50289611_50289676_50297016_50297155_50299952_50300204_50304354_50304449_50305649_50305785_50310165_50310274_50313194_50313326_50321853_50322011_50322990_50323084_50323307_50323412_50324345_50324470_50324950_50325119_50328823_50328938_50329763_50329818_50329964_50330082_50347102
ENSMUST00000090023.13	chr16	+	2080	11	FSM	ENSMUSG00000022841.16	ENSMUST00000090023.13	2080	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTTTGGGTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	20354227	20362806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
ENSMUST00000090031.12	chr3	+	593	3	FSM	ENSMUSG00000068523.13	ENSMUST00000090031.12	593	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTGGGTACTAATCTTT	NA	NA	NA	NA	NA	NA	NA	NA	146205561	146211327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_146205776_146209014_146209155_146211088
ENSMUST00000090031.12-0	chr3	+	485	3	FSM	ENSMUSG00000068523.13	ENSMUST00000090031.12	593	3	83	25	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGCCTCCTTACTGATG	NA	NA	NA	NA	NA	NA	NA	NA	146205644	146211302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_146205776_146209014_146209155_146211088
ENSMUST00000090031.12-1	chr3	+	450	3	FSM	ENSMUSG00000068523.13	ENSMUST00000090031.12	593	3	0	143	0	-118	multi-exon	FALSE	canonical	NA	NA	NA	NA	611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTGCTCGTCAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	146205561	146211184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_146205776_146209014_146209155_146211088
ENSMUST00000090042.12	chr2	-	2874	20	FSM	ENSMUSG00000033808.17	ENSMUST00000090042.12	2874	20	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	NA	NA	NA	NA	NA	NA	NA	120234550	120185792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204391_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ENSMUST00000090046.12	chr2	-	2897	20	FSM	ENSMUSG00000033808.17	ENSMUST00000090046.12	2897	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	NA	NA	NA	NA	NA	NA	NA	120234570	120185792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204968_120205041_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ENSMUST00000090057.6	chr15	-	3230	8	FSM	ENSMUSG00000022340.16	ENSMUST00000090057.6	3230	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTCTCCTATAATTAT	NA	NA	NA	NA	NA	NA	NA	NA	44651459	44535251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_44537045_44538761_44538912_44540930_44541135_44546743_44546847_44582183_44582382_44609641_44609859_44611704_44611795_44650984
ENSMUST00000090086.11	chr16	+	3549	8	FSM	ENSMUSG00000000884.18	ENSMUST00000090086.11	3549	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTAGACTTGATTTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	18317637	18385429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUST00000090147.7	chr14	+	1645	4	FSM	ENSMUSG00000021900.11	ENSMUST00000090147.7	2324	4	0	679	0	-679	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGAGGAAGTAGGAAAACT	NA	NA	NA	NA	NA	NA	NA	NA	31363013	31389857	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_31363093_31384026_31384283_31387838_31387989_31388697
ENSMUST00000090170.6	chr15	-	796	1	FSM	ENSMUSG00000068579.6	ENSMUST00000090170.6	796	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAATGTACACTGAATTT	NA	NA	NA	NA	NA	NA	NA	NA	36309090	36308294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_36308300_36309100
ENSMUST00000090205.5	chr14	-	426	2	FSM	ENSMUSG00000058351.12	ENSMUST00000090205.5	426	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAATAAAAATATTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	30850860	30846635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_30846791_30850589
ENSMUST00000090212.5	chr14	+	1407	13	FSM	ENSMUSG00000071547.5	ENSMUST00000090212.5	1407	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCTCTGCTTCATTCCA	NA	NA	NA	NA	NA	NA	NA	NA	30856809	30861078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_30856881_30856986_30857062_30857294_30857351_30857450_30857545_30857642_30857772_30857874_30857936_30858021_30858125_30858224_30858327_30858552_30858635_30860080_30860168_30860288_30860430_30860565_30860631_30860737
ENSMUST00000090371.14	chr3	-	850	7	FSM	ENSMUSG00000028114.17	ENSMUST00000090371.14	7197	7	-167	6514	10	-6514	multi-exon	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCTGGAAGAATACTATAG	NA	NA	NA	NA	NA	NA	NA	NA	123179747	123168459	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
ENSMUST00000090476.10	chr3	-	809	6	FSM	ENSMUSG00000038543.14	ENSMUST00000090476.10	809	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCCTACTTCTTAATGA	NA	NA	NA	NA	NA	NA	NA	NA	95799317	95791265	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_95791550_95792281_95792384_95795452_95795609_95796168_95796228_95797034_95797122_95799196
ENSMUST00000090480.6	chr16	-	1150	10	FSM	ENSMUSG00000039637.16	ENSMUST00000090480.6	1150	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTGAAGAGAAATGCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	4497641	4470426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_4470626_4472873_4472957_4473411_4473499_4479728_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415
ENSMUST00000090488.4	chr15	-	482	1	FSM	ENSMUSG00000068706.4	ENSMUST00000090488.4	482	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGCCTGGGACGGAGCC	NA	NA	NA	NA	NA	NA	NA	NA	5150617	5150135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_5150100_5150600
ENSMUST00000090553.12	chr3	-	3570	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAAGGTGTGGTTTATTC	NA	NA	NA	NA	NA	NA	NA	NA	108352514	108332180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
ENSMUST00000090608.6	chr2	+	1700	3	FSM	ENSMUSG00000027243.9	ENSMUST00000090608.6	2308	3	0	608	0	-608	multi-exon	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCTGTGCACTGTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	91541266	91551282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_91541597_91542424_91543211_91550698
ENSMUST00000090632.11	chr6	+	3357	16	FSM	ENSMUSG00000029629.18	ENSMUST00000090632.11	3985	16	1	627	0	-559	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGACCCTTCGCATATC	NA	NA	NA	NA	NA	NA	NA	NA	11925914	12007453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_11926292_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983
ENSMUST00000090686.11	chr6	-	1547	10	FSM	ENSMUSG00000004631.16	ENSMUST00000090686.11	1547	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTAAACTTTAAAATAAATA	NA	NA	NA	NA	NA	NA	NA	NA	4747116	4674383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_4674633_4678066_4678111_4689578_4689768_4691428_4691641_4694021_4694185_4707073_4707273_4711307_4711381_4717920_4718079_4719373_4719497_4746979
ENSMUST00000090726.6	chr2	+	2583	13	FSM	ENSMUSG00000027074.15	ENSMUST00000090726.6	2583	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGCTTCTACCTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	84767007	84788853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_84767194_84767866_84768214_84768566_84768697_84771324_84771372_84774585_84774663_84774861_84774955_84777183_84777324_84778678_84778777_84780316_84780536_84780764_84780885_84785774_84785962_84786615_84786731_84788029
ENSMUST00000090759.5	chr3	+	1428	10	FSM	ENSMUSG00000028093.16	ENSMUST00000090759.5	1754	10	326	0	326	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTTTGCCTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	97066418	97083890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075302_97075391_97075756_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
ENSMUST00000090804.12	chr3	+	4325	21	FSM	ENSMUSG00000015522.19	ENSMUST00000090804.12	4325	21	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTGTGTTGTGTGATA	NA	NA	NA	NA	NA	NA	NA	NA	95341700	95404551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
ENSMUST00000090852.11	chr2	+	2001	12	FSM	ENSMUSG00000068882.14	ENSMUST00000090852.11	2001	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGCCAAACATT	NA	NA	NA	NA	NA	NA	NA	NA	69691905	69702130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUST00000090973.12	chr3	+	1417	4	FSM	ENSMUSG00000004891.17	ENSMUST00000090973.12	6126	4	36	4673	0	-4673	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCGGACCACTTCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	87878435	87883085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_87879296_87880298_87880424_87882108_87882183_87882727
ENSMUST00000091039.5	chr2	-	2738	20	FSM	ENSMUSG00000038831.17	ENSMUST00000091039.5	2738	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCGTGTCTTGTTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	33261490	33026984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_33027722_33031006_33031099_33033055_33033162_33033311_33033405_33035409_33035516_33036581_33036666_33045299_33045352_33047783_33047942_33048921_33049049_33058192_33058261_33062429_33062524_33064422_33064561_33150489_33150617_33163572_33163666_33166157_33166248_33174836_33174921_33214664_33214716_33226524_33226633_33230724_33230846_33261281
ENSMUST00000091097.3	chr9	-	318	1	FSM	ENSMUSG00000066771.3	ENSMUST00000091097.3	318	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCCCTCCCCCAATAAAA	NA	NA	NA	NA	NA	NA	NA	NA	35193131	35192813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_35192800_35193100
ENSMUST00000091130.5	chr3	+	1488	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1603	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGT	NA	NA	NA	NA	NA	NA	NA	NA	54388858	54390346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_54388900_54390300
ENSMUST00000091201.7	chr13	+	1467	5	FSM	ENSMUSG00000042348.11	ENSMUST00000091201.7	3364	5	88	1809	-29	376	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTTTTAACGTCATTAG	NA	NA	NA	NA	NA	NA	NA	NA	113931128	114292188	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_113931233_114058782_114058928_114070599_114070660_114104117_114104327_114291239
ENSMUST00000091288.13	chr2	+	629	3	FSM	ENSMUSG00000079037.10	ENSMUST00000091288.13	2184	3	29	1526	29	-1526	multi-exon	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGTACTACAGGCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	131751876	131778823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_131751924_131754114_131754213_131778339
ENSMUST00000091289.5	chr3	-	1590	1	FSM	ENSMUSG00000069083.5	ENSMUST00000091289.5	1590	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCCAGCTAAGGCACAAAG	NA	NA	NA	NA	NA	NA	NA	NA	25266769	25265179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_25265200_25266800
ENSMUST00000091325.10	chr3	+	3391	19	FSM	ENSMUSG00000027550.15	ENSMUST00000091325.10	3391	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGTTGATAATTGCACAC	NA	NA	NA	NA	NA	NA	NA	NA	14598883	14631163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605127_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14630792
ENSMUST00000091328.4	chr7	+	1716	8	FSM	ENSMUSG00000063065.14	ENSMUST00000091328.4	1716	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTCTGTCTGTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	126359768	126364991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126360086_126362206_126362397_126362569_126362687_126362912_126363028_126363405_126363538_126363705_126363816_126363894_126364050_126364411
ENSMUST00000091328.4-0	chr7	+	1564	8	FSM	ENSMUSG00000063065.14	ENSMUST00000091328.4	1716	8	152	0	152	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTCTGTCTGTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	126359920	126364991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126360086_126362206_126362397_126362569_126362687_126362912_126363028_126363405_126363538_126363705_126363816_126363894_126364050_126364411
ENSMUST00000091355.12	chr3	-	3081	7	FSM	ENSMUSG00000027506.16	ENSMUST00000091355.12	3081	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTTCTTTTTTATGTATT	NA	NA	NA	NA	NA	NA	NA	NA	9069538	8993685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_8996235_9000051_9000101_9001498_9001541_9009670_9009773_9012540_9012690_9018743_9018860_9069464
ENSMUST00000091358.11	chr4	+	3527	9	FSM	ENSMUSG00000028560.12	ENSMUST00000091358.11	3527	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGATTTTTTTTTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	98812115	98823780	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_98812481_98814672_98814912_98816470_98816592_98817100_98817206_98817930_98818092_98819096_98819786_98820422_98820594_98821060_98821263_98822306
ENSMUST00000091374.9	chr1	-	1215	5	FSM	ENSMUSG00000026021.16	ENSMUST00000091374.9	1215	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGCTCCTTTTATTTTA	NA	NA	NA	NA	NA	NA	NA	NA	59709993	59678592	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_59679428_59681576_59681649_59683675_59683754_59694616_59694692_59709838
ENSMUST00000091459.12	chr13	+	1554	10	FSM	ENSMUSG00000064138.15	ENSMUST00000091459.12	3892	10	39	2299	35	281	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCGCGGTCCTACCGCCC	NA	NA	NA	NA	NA	NA	NA	NA	77856847	78312055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_77856973_77907546_77907649_77909956_77910058_77973441_77973508_77982628_77982821_78050772_78050995_78100103_78100224_78147704_78147822_78154506_78154592_78311631
ENSMUST00000091560.11	chr13	+	2736	15	FSM	ENSMUSG00000021458.18	ENSMUST00000091560.11	3509	15	233	540	0	-540	multi-exon	FALSE	canonical	NA	NA	NA	NA	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCAACACAGCGGTCCATG	NA	NA	NA	NA	NA	NA	NA	NA	63162980	63446930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_63163778_63180836_63181004_63208848_63209009_63215853_63216100_63304359_63304550_63318754_63318862_63338292_63338396_63338879_63338988_63347320_63347365_63357919_63357981_63387900_63387970_63388070_63388146_63429955_63430073_63444671_63444759_63446525
ENSMUST00000091569.7	chr13	-	1432	8	FSM	ENSMUSG00000050345.10	ENSMUST00000091569.7	1432	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGACTTCTTTTTTTAGT	NA	NA	NA	NA	NA	NA	NA	NA	61012289	60990425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_60990791_60992122_60992241_60992893_60993057_61000913_61001139_61001329_61001477_61001569_61001693_61002626_61002764_61012135
ENSMUST00000091609.11	chr13	-	2186	5	FSM	ENSMUSG00000047547.15	ENSMUST00000091609.11	2186	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTAAAGACTGTATTTTA	NA	NA	NA	NA	NA	NA	NA	NA	54759157	54740213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_54741856_54746534_54746647_54746856_54746975_54754456_54754504_54758890
ENSMUST00000091641.13	chr13	+	1785	9	FSM	ENSMUSG00000021431.16	ENSMUST00000091641.13	1785	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGAAGTGCTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	38388920	38411641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38400300_38400490_38401349_38401472_38404663_38404753_38405210_38405370_38410849
ENSMUST00000091672.13	chr13	+	930	8	FSM	ENSMUSG00000069255.14	ENSMUST00000091672.13	1161	8	73	158	11	-158	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGAAGTGTGCAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	30844054	30895056	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_30844130_30852787_30852822_30856375_30856459_30880218_30880269_30889608_30889684_30891912_30892085_30892659_30892733_30894688
ENSMUST00000091710.6	chr13	-	352	1	FSM	ENSMUSG00000080076.5	ENSMUST00000091710.6	352	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGCCACCACTAGGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	21905978	21905626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_21905600_21906000
ENSMUST00000091741.6	chr13	-	485	1	FSM	ENSMUSG00000069301.6	ENSMUST00000091741.6	485	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCACTTAGCTTTCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	22227114	22226629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_22226600_22227100
ENSMUST00000091742.6	chr13	-	405	1	FSM	ENSMUSG00000069302.6	ENSMUST00000091742.6	405	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	464	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTTTCAATATCTCCCAA	NA	NA	NA	NA	NA	NA	NA	NA	22219738	22219333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_22219300_22219700
ENSMUST00000091745.6	chr13	+	480	1	FSM	ENSMUSG00000094248.2	ENSMUST00000091745.6	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGTAAATCGATGTCATTT	NA	NA	NA	NA	NA	NA	NA	NA	21994634	21995114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_21994600_21995100
ENSMUST00000091749.4	chr13	-	1254	2	FSM	ENSMUSG00000069307.8	ENSMUST00000091749.4	1254	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCCACTTTTGACACAGT	NA	NA	NA	NA	NA	NA	NA	NA	21994367	21991446	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_21992298_21993964
ENSMUST00000091751.3	chr13	-	393	1	FSM	ENSMUSG00000069309.3	ENSMUST00000091751.3	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	499	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAATTGTTTCCTGATCAT	NA	NA	NA	NA	NA	NA	NA	NA	21971388	21970995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_21971000_21971400
ENSMUST00000091905.4	chr18	-	615	1	FSM	ENSMUSG00000069379.4	ENSMUST00000091905.4	615	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACCTGTGCTCTGTGGTTG	NA	NA	NA	NA	NA	NA	NA	NA	51998953	51998338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_51998300_51999000
ENSMUST00000091967.13	chr18	+	2091	15	FSM	ENSMUSG00000024381.17	ENSMUST00000091967.13	2091	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGAGGCGTGTCTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	32510297	32568790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32559276_32559406_32564723_32564796_32565035_32565147_32565376_32565479_32568187
ENSMUST00000092041.11	chr18	-	1895	10	FSM	ENSMUSG00000037013.18	ENSMUST00000092041.11	2911	10	72	944	10	-920	multi-exon	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAATACTGTTTTCAAAC	NA	NA	NA	NA	NA	NA	NA	NA	14815813	14759631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ENSMUST00000092143.12	chr10	-	3843	7	FSM	ENSMUSG00000051236.14	ENSMUST00000092143.12	3843	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCTCTGCTTCCTAAA	NA	NA	NA	NA	NA	NA	NA	NA	120735006	120617000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_120620144_120627306_120627405_120661012_120661042_120685880_120685959_120687888_120687998_120706939_120707057_120734737
ENSMUST00000092266.11	chr10	+	1763	10	FSM	ENSMUSG00000034674.19	ENSMUST00000092266.11	2959	10	48	1148	17	-1148	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGCCCTCCGTGGACTC	NA	NA	NA	NA	NA	NA	NA	NA	82465709	82485010	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_82465774_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484411
ENSMUST00000092295.10	chr10	-	1662	7	FSM	ENSMUSG00000035478.15	ENSMUST00000092295.10	1662	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	80235384	80228372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80234955
ENSMUST00000092425.11	chr11	+	737	6	FSM	ENSMUSG00000017404.13	ENSMUST00000092425.11	737	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	97917535	97921318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_97917589_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ENSMUST00000092473.5	chr10	-	2712	9	FSM	ENSMUSG00000020078.17	ENSMUST00000092473.5	2712	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTGTCATTACAGCAT	NA	NA	NA	NA	NA	NA	NA	NA	62322377	62291013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322156
ENSMUST00000092511.6	chr10	+	630	1	FSM	ENSMUSG00000069622.6	ENSMUST00000092511.6	630	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTTGGCACCTCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	59231576	59232206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_59231600_59232200
ENSMUST00000092523.3	chr7	-	612	1	FSM	ENSMUSG00000074547.5	ENSMUST00000092523.3	612	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	261	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATGCGTAGTGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	13067182	13066570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_13066600_13067200
ENSMUST00000092559.13	chr11	+	1686	10	NIC	ENSMUSG00000056938.17	novel	2075	11	NA	NA	38	-185	intron_retention	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTACGCCCCAAAAGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	102992551	103002673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_102992615_102993507_102993923_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUST00000092567.11	chr11	-	1890	3	FSM	ENSMUSG00000034520.15	ENSMUST00000092567.11	1890	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	NA	NA	NA	NA	NA	NA	NA	102710526	102690404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_102692022_102693666_102693743_102710329
ENSMUST00000092614.9	chr6	+	866	9	FSM	ENSMUSG00000069678.11	ENSMUST00000092614.9	866	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACTTTTCATCTTC	NA	NA	NA	NA	NA	NA	NA	NA	83055370	83057828	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
ENSMUST00000092678.10	chr10	+	5307	12	FSM	ENSMUSG00000037608.17	ENSMUST00000092678.10	5307	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTGGTCTCTGTTTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	20188214	20218247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20215454_20215668_20215797
ENSMUST00000092688.12	chr11	-	1399	9	FSM	ENSMUSG00000017176.18	ENSMUST00000092688.12	1399	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACGCGTCTTTAATCCC	NA	NA	NA	NA	NA	NA	NA	NA	100331915	100320178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654_100331754_100331869
ENSMUST00000092689.9	chr11	-	1344	8	FSM	ENSMUSG00000017176.18	ENSMUST00000092689.9	1344	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGCACGCGTCTTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	100331846	100320181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331753
ENSMUST00000092735.12	chr11	-	2627	18	FSM	ENSMUSG00000018160.16	ENSMUST00000092735.12	2627	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTCTGTGTTTTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	98084086	98042979	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_98043790_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ENSMUST00000092768.7	chr11	+	1865	3	FSM	ENSMUSG00000001510.9	ENSMUST00000092768.7	2607	3	0	742	0	-742	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCAGCTCTGCTCTGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	95010944	95015380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_95011473_95012533_95012725_95014234
ENSMUST00000092857.13	chr11	+	3687	19	FSM	ENSMUSG00000017686.18	ENSMUST00000092857.13	3687	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACACTTTTCAAAGACAAC	NA	NA	NA	NA	NA	NA	NA	NA	80099909	80158312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80156567
ENSMUST00000092880.14	chr11	+	2700	4	FSM	ENSMUSG00000019437.18	ENSMUST00000092880.14	2700	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATTGCTAGAGGTTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	78069476	78072735	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_78070048_78070195_78070279_78070365_78070449_78070772
ENSMUST00000092880.14-0	chr11	+	2277	4	FSM	ENSMUSG00000019437.18	ENSMUST00000092880.14	2700	4	34	389	0	-389	multi-exon	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTGTCCTCTATTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	78069510	78072346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_78070048_78070195_78070279_78070365_78070449_78070772
ENSMUST00000092955.11	chr19	+	830	6	FSM	ENSMUSG00000069833.14	ENSMUST00000092955.11	830	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	265	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGAGGTGGCTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	8966658	9054078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_9014522_9014623_9053939
ENSMUST00000092966.5	chr17	+	543	5	FSM	ENSMUSG00000000579.15	ENSMUST00000092966.5	2589	5	0	2046	0	-2046	multi-exon	TRUE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGGCAAACCCCTTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	6869069	6875032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472_6874551_6874899
ENSMUST00000093061.7	chr11	+	2251	6	FSM	ENSMUSG00000020455.17	ENSMUST00000093061.7	2251	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCTCTGCTTATCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	58868941	58882283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_58869471_58872066_58872163_58872818_58873050_58879550_58879574_58879654_58879756_58881012
ENSMUST00000093109.11	chr11	-	962	6	FSM	ENSMUSG00000020388.13	ENSMUST00000093109.11	962	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCTGCTTGCTCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	53959758	53945773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_53946066_53946615_53946780_53946968_53947151_53950763_53950843_53954460_53954613_53959665
ENSMUST00000093140.5	chr11	+	962	3	FSM	ENSMUSG00000025135.13	ENSMUST00000093140.5	962	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCAAAACCTTCATCGTA	NA	NA	NA	NA	NA	NA	NA	NA	120489357	120496602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_120489697_120490067_120490195_120496106
ENSMUST00000093153.2	chr11	-	2403	3	FSM	ENSMUSG00000069893.11	ENSMUST00000093153.2	2403	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTGCGTCCTTTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	48870225	48856643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_48858803_48869865_48870015_48870130
ENSMUST00000093169.3	chr11	-	958	1	FSM	ENSMUSG00000069899.4	ENSMUST00000093169.3	958	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	465	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGACAGAGAGAGAGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	45943138	45942180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_45942200_45943100
ENSMUST00000093191.3	chr11	-	2505	12	FSM	ENSMUSG00000069910.3	ENSMUST00000093191.3	2505	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATTTGTATTTTTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	34724468	34700016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_34700670_34704152_34704502_34709949_34710138_34710604_34710715_34711716_34711858_34713007_34713119_34713200_34713300_34713386_34713537_34714156_34714355_34716189_34716367_34721551_34721727_34724314
ENSMUST00000093196.11	chr5	-	1092	5	FSM	ENSMUSG00000066551.13	ENSMUST00000093196.11	1092	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCTGTGTAAGATTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	148988426	148985454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148988088
ENSMUST00000093234.5	chr8	-	639	5	FSM	ENSMUSG00000031879.15	ENSMUST00000093234.5	639	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCAGTATGCCTTAGCG	NA	NA	NA	NA	NA	NA	NA	NA	105368333	105366479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_105366719_105367151_105367198_105367599_105367721_105367942_105368023_105368180
ENSMUST00000093312.6	chr8	-	2610	4	FSM	ENSMUSG00000031734.14	ENSMUST00000093312.6	2610	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCAGGTCTGCCACATGG	NA	NA	NA	NA	NA	NA	NA	NA	92528543	92525152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_92525605_92526038_92526106_92526286_92527427_92527592
ENSMUST00000093326.4	chr8	-	615	1	FSM	ENSMUSG00000069962.4	ENSMUST00000093326.4	615	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCTCTGCTCTGTGGATG	NA	NA	NA	NA	NA	NA	NA	NA	89914188	89913573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_89913600_89914200
ENSMUST00000093517.7	chr8	+	1520	7	FSM	ENSMUSG00000031628.10	ENSMUST00000093517.7	1520	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTTTATTACTGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	47070429	47091752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_47070532_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
ENSMUST00000093785.6	chr9	+	648	2	FSM	ENSMUSG00000079334.9	ENSMUST00000093785.6	2053	2	701	704	701	-643	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTGGGCCATGCCCGC	NA	NA	NA	NA	NA	NA	NA	NA	107458016	107460545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_107458135_107460015
ENSMUST00000093798.9	chr9	-	1320	3	FSM	ENSMUSG00000040433.17	ENSMUST00000093798.9	4091	3	0	2771	0	-2771	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCCACTCTCTCTAGTAA	NA	NA	NA	NA	NA	NA	NA	NA	96613728	96570246	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_96571083_96600262_96600363_96613344
ENSMUST00000093833.6	chr9	+	1537	4	FSM	ENSMUSG00000032305.16	ENSMUST00000093833.6	3001	4	89	1375	10	-771	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGATGCACAAAACAAAACA	NA	NA	NA	NA	NA	NA	NA	NA	57444899	57449090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_57445118_57445306_57445395_57446093_57446172_57447937
ENSMUST00000093943.10	chr11	+	1251	6	FSM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATCTGTCTTTTGGTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	96679984	96699466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96699009
ENSMUST00000093955.12	chr11	+	404	5	FSM	ENSMUSG00000020485.15	ENSMUST00000093955.12	706	5	1	301	1	-301	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGCAGGCCATAGCATCTT	NA	NA	NA	NA	NA	NA	NA	NA	87628378	87634142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_87628495_87628992_87629100_87633621_87633678_87633883_87633938_87634071
ENSMUST00000094014.10	chr11	+	2130	5	FSM	ENSMUSG00000069808.14	ENSMUST00000094014.10	2130	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTATGTGCCCTGGCG	NA	NA	NA	NA	NA	NA	NA	NA	76092840	76100242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_76093082_76093377_76093462_76096079_76096282_76097953_76098050_76098735
ENSMUST00000094028.10	chr3	-	3193	10	FSM	ENSMUSG00000070372.12	ENSMUST00000094028.10	3193	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCCTTCCTGAGTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	104771821	104730094	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
ENSMUST00000094055.10	chr11	+	1788	4	FSM	ENSMUSG00000040938.17	ENSMUST00000094055.10	1788	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTTGAGAGTTCCATTAG	NA	NA	NA	NA	NA	NA	NA	NA	70104940	70107240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_70105539_70105780_70105925_70106109_70106878_70106962
ENSMUST00000094065.5	chr11	+	492	4	FSM	ENSMUSG00000070394.11	ENSMUST00000094065.5	492	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	619	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGTCTTTATTCATC	NA	NA	NA	NA	NA	NA	NA	NA	69729349	69730444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69729476_69729745_69729778_69730013_69730095_69730191
ENSMUST00000094081.5	chr11	+	1263	4	FSM	ENSMUSG00000020895.15	ENSMUST00000094081.5	1263	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGCAAATAGATATTATTC	NA	NA	NA	NA	NA	NA	NA	NA	68961636	68964119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248
ENSMUST00000094215.10	chr7	+	3104	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	330	1058	330	-1058	multi-exon	FALSE	canonical	NA	NA	NA	NA	591	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCCCCCAAAATAACCCCC	NA	NA	NA	NA	NA	NA	NA	NA	83541537	83549682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
ENSMUST00000094276.5	chr1	+	2838	2	FSM	ENSMUSG00000063659.12	ENSMUST00000094276.5	4204	2	442	924	84	-920	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGCCGAGTGTTTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	177272302	177277406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_177272389_177274654
ENSMUST00000094324.8	chr9	+	3632	15	FSM	ENSMUSG00000032477.15	ENSMUST00000094324.8	3632	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCTGCCTAGTTCCTAA	NA	NA	NA	NA	NA	NA	NA	NA	109704646	109722963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_109705228_109706228_109706303_109707335_109707379_109708298_109708336_109708901_109709004_109710540_109710646_109712556_109712683_109713186_109713262_109713410_109713579_109716315_109716415_109717941_109718005_109718099_109718199_109718778_109718910_109720812_109720925_109721146
ENSMUST00000094365.11	chr3	-	1180	7	FSM	ENSMUSG00000027556.16	ENSMUST00000094365.11	1180	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGTTTATTGTGCATTT	NA	NA	NA	NA	NA	NA	NA	NA	14843519	14831276	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_14831713_14832463_14832620_14835230_14835294_14835867_14835964_14841277_14841397_14842788_14842987_14843407
ENSMUST00000094434.13	chr7	-	968	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	5689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	NA	NA	NA	NA	NA	NA	NA	45109308	45107367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
ENSMUST00000094469.6	chr11	+	486	5	FSM	ENSMUSG00000075702.11	ENSMUST00000094469.6	707	5	0	221	0	-221	multi-exon	FALSE	canonical	NA	NA	NA	NA	310	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAGCTTCAGAACACGA	NA	NA	NA	NA	NA	NA	NA	NA	3464866	3467130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_3465074_3466260_3466297_3466485_3466521_3466841_3466921_3467001
ENSMUST00000094481.2	chr4	+	1380	1	FSM	ENSMUSG00000070583.2	ENSMUST00000094481.2	1380	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGCTTAAAATCAGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	147953435	147954815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_147953400_147954800
ENSMUST00000094632.6	chr7	+	1524	16	FSM	ENSMUSG00000070699.6	ENSMUST00000094632.6	1868	16	6	338	6	-31	multi-exon	TRUE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCCCAGGCTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	28441432	28452958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_28441708_28443666_28443763_28445876_28445907_28446165_28446307_28446383_28446439_28446911_28446976_28447256_28447363_28448379_28448428_28449001_28449111_28449305_28449352_28449435_28449524_28449606_28449717_28451666_28451761_28451850_28451944_28452027_28452094_28452855
ENSMUST00000094657.10	chr4	+	1401	9	FSM	ENSMUSG00000054405.15	ENSMUST00000094657.10	1401	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	606	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGTCTCCTCCTCGGGT	NA	NA	NA	NA	NA	NA	NA	NA	132262860	132281053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
ENSMUST00000094693.11	chr12	+	1527	8	FSM	ENSMUSG00000021134.18	ENSMUST00000094693.11	1527	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCTGTTTCTCTCAA	NA	NA	NA	NA	NA	NA	NA	NA	80992277	80997281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
ENSMUST00000094769.13	chr4	+	1888	5	FSM	ENSMUSG00000044730.18	ENSMUST00000094769.13	2911	5	0	1023	0	-1023	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGGATCAAAGGAGAAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	124830866	124837426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_124831127_124832232_124832511_124834158_124834339_124836145_124836265_124836375
ENSMUST00000094835.9	chr2	-	1498	8	FSM	ENSMUSG00000040591.19	ENSMUST00000094835.9	1498	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAATGAGTCTAAAGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	91275025	91108588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_91109303_91109534_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093_91135179_91214073_91214205_91274913
ENSMUST00000094836.6	chr5	-	3458	12	FSM	ENSMUSG00000029123.9	ENSMUST00000094836.6	3458	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCTTGTAAATGGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	37874515	37604168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_37606136_37612278_37612344_37614465_37614598_37616945_37617072_37618693_37618811_37624079_37624184_37647804_37647895_37656332_37656371_37688888_37689063_37786202_37786355_37806434_37806491_37874078
ENSMUST00000094869.12	chr5	+	477	4	FSM	ENSMUSG00000070858.13	ENSMUST00000094869.12	477	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCCTGTATTTTGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	34140776	34142357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_34140909_34141100_34141241_34141395_34141485_34142241
ENSMUST00000095045.9	chr2	+	2536	7	FSM	ENSMUSG00000026811.19	ENSMUST00000095045.9	2536	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGTTCTGTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	32497022	32510816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_32497124_32498053_32498238_32499237_32499329_32502235_32502416_32504792_32505200_32508508_32508617_32509351
ENSMUST00000095048.6	chr6	-	1275	6	FSM	ENSMUSG00000079477.10	ENSMUST00000095048.6	1275	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTTAATGCTTGTTACTT	NA	NA	NA	NA	NA	NA	NA	NA	87996765	87976921	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_87996617
ENSMUST00000095070.4	chr4	+	2901	4	FSM	ENSMUSG00000070972.14	ENSMUST00000095070.4	4023	4	21	1101	21	-1101	multi-exon	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGAGTTCTGTAAACTGTA	NA	NA	NA	NA	NA	NA	NA	NA	59003192	59024472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_59003558_59017669_59017823_59020058_59020530_59022560
ENSMUST00000095074.4	chr4	+	3550	3	FSM	ENSMUSG00000037348.16	ENSMUST00000095074.4	3550	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCCTTGATTCGATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	134224314	134237546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_134224348_134227910_134227995_134234113
ENSMUST00000095109.5	chr4	+	1452	1	FSM	ENSMUSG00000071001.5	ENSMUST00000095109.5	1452	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATGAAGGGGAAGGAAATA	NA	NA	NA	NA	NA	NA	NA	NA	43727187	43728639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_43727200_43728600
ENSMUST00000095128.10	chr4	-	659	4	FSM	ENSMUSG00000071014.11	ENSMUST00000095128.10	659	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1757	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTAGCTACTTTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	40279421	40270590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_40270848_40272809_40272855_40277652_40277746_40279157
ENSMUST00000095145.12	chr4	+	2403	4	FSM	ENSMUSG00000078773.12	ENSMUST00000095145.12	2403	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTATATATTGAATTTAT	NA	NA	NA	NA	NA	NA	NA	NA	11558941	11585744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11583676
ENSMUST00000095195.3	chr17	-	369	1	FSM	ENSMUSG00000071040.3	ENSMUST00000095195.3	369	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTCGGCTGACCTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	81246143	81245774	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_81245800_81246100
ENSMUST00000095214.10	chr8	+	1731	6	FSM	ENSMUSG00000036810.17	ENSMUST00000095214.10	1731	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTAGTGGTTAGAGATT	NA	NA	NA	NA	NA	NA	NA	NA	88845396	88861734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856974_88857030_88860415
ENSMUST00000095218.5	chr17	-	792	1	FSM	ENSMUSG00000071052.5	ENSMUST00000095218.5	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGTACACTAAATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	58146216	58145424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_58145400_58146200
ENSMUST00000095220.4	chr8	+	1907	10	FSM	ENSMUSG00000008167.15	ENSMUST00000095220.4	1907	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	561	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTGTGAGCTTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	85786683	85793750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791126_85791209_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
ENSMUST00000095228.5	chr8	+	2265	5	FSM	ENSMUSG00000079003.4	ENSMUST00000095228.5	2265	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTTCATTTTCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	84724129	84727038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_84725195_84725571_84725870_84725952_84726050_84726144_84726257_84726345
ENSMUST00000095273.7	chr8	+	930	5	FSM	ENSMUSG00000071078.7	ENSMUST00000095273.7	1161	5	0	231	0	-231	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGGACTGAAGAAGATGC	NA	NA	NA	NA	NA	NA	NA	NA	70583996	70586158	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_70584250_70584567_70584659_70585061_70585168_70585236_70585305_70585746
ENSMUST00000095347.13	chr17	-	2617	12	FSM	ENSMUSG00000024335.21	ENSMUST00000095347.13	2617	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGGTATGGGTGGGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	34337463	34331336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335881_34336186_34337429
ENSMUST00000095349.6	chr8	-	2808	8	FSM	ENSMUSG00000052906.8	ENSMUST00000095349.6	2808	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGAAGTCAGCTTGTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	34131995	34109613	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_34111729_34113189_34113265_34116351_34116394_34119264_34119403_34123529_34123656_34125316_34125388_34128507_34128631_34131877
ENSMUST00000095360.11	chr10	+	1867	4	FSM	ENSMUSG00000020053.19	ENSMUST00000095360.11	7052	4	190	4995	0	246	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCAGTTTTCCTCATCTG	NA	NA	NA	NA	NA	NA	NA	NA	87695119	87767909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_87695275_87700592_87700750_87749480_87749663_87766536
ENSMUST00000095383.6	chr10	+	735	3	FSM	ENSMUSG00000060935.7	ENSMUST00000095383.6	3616	3	0	2881	0	-70	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTGCTCTCCACAGCATA	NA	NA	NA	NA	NA	NA	NA	NA	84938490	84950568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_84938862_84946662_84946730_84950271
ENSMUST00000095410.8	chr12	+	2384	3	FSM	ENSMUSG00000037957.15	ENSMUST00000095410.8	2384	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTTGTAGAACTCTGAT	NA	NA	NA	NA	NA	NA	NA	NA	110704425	110761462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_110704712_110745729_110745913_110759547
ENSMUST00000095438.10	chr8	-	2838	7	FSM	ENSMUSG00000039814.16	ENSMUST00000095438.10	2838	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTAGTGTTAGTATCTA	NA	NA	NA	NA	NA	NA	NA	NA	19000991	18982744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_18984622_18987242_18987355_18989083_18989254_18990628_18990839_18991960_18992146_18998574_18998759_19000891
ENSMUST00000095458.6	chr13	+	250	3	FSM	ENSMUSG00000071180.6	ENSMUST00000095458.6	1918	3	4	1664	0	-487	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGACCCATATGGCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	108180983	108184042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_108181021_108182958_108183103_108183973
ENSMUST00000095471.6	chr14	-	855	1	FSM	ENSMUSG00000095427.3	ENSMUST00000095471.6	855	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGTTTTTATATGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	76474985	76474130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_76474100_76475000
ENSMUST00000095579.11	chr17	-	1450	14	FSM	ENSMUSG00000041319.15	ENSMUST00000095579.11	1450	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGCATTTTATTCCC	NA	NA	NA	NA	NA	NA	NA	NA	23892856	23887591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892807
ENSMUST00000095625.11	chr14	+	1195	4	FSM	ENSMUSG00000034795.15	ENSMUST00000095625.11	1195	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTCCACATTGAAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	77274221	77349644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_77274412_77305299_77305394_77306276_77306390_77348846
ENSMUST00000095725.11	chr10	+	2127	8	FSM	ENSMUSG00000038240.14	ENSMUST00000095725.11	2127	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAAGTGTCTGCCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	43097481	43316598	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43269866_43270041_43271556_43271689_43289510_43289544_43315794
ENSMUST00000095779.11	chr10	-	919	5	FSM	ENSMUSG00000039166.17	ENSMUST00000095779.11	919	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTTTGGTTTGTGGCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	25175005	25155226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_25155703_25159790_25159940_25165496_25165629_25174032_25174127_25174937
ENSMUST00000095794.4	chr10	-	1195	7	FSM	ENSMUSG00000071359.14	ENSMUST00000095794.4	1195	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTCTCTTCATATC	NA	NA	NA	NA	NA	NA	NA	NA	22607837	22581279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607681
ENSMUST00000095795.5	chr10	+	1271	7	FSM	ENSMUSG00000078452.11	ENSMUST00000095795.5	1271	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	22237792	22250038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_22237809_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
ENSMUST00000095797.6	chr13	+	1029	6	FSM	ENSMUSG00000021395.12	ENSMUST00000095797.6	4434	6	0	3405	0	-3405	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGGTGAAAACATCCTAG	NA	NA	NA	NA	NA	NA	NA	NA	51254915	51303177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_51255027_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997
ENSMUST00000095893.11	chr10	+	973	5	FSM	ENSMUSG00000061759.16	ENSMUST00000095893.11	2429	5	46	1410	0	-1409	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTACTGAGATTCATTTCC	NA	NA	NA	NA	NA	NA	NA	NA	4382512	4403731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400810_4403471
ENSMUST00000095978.5	chr19	-	901	1	FSM	ENSMUSG00000071497.5	ENSMUST00000095978.5	901	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1249	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	53577499	53576598	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_53576600_53577500
ENSMUST00000095998.7	chr19	-	2948	2	FSM	ENSMUSG00000117975.2	ENSMUST00000095998.7	3760	2	49	763	47	-763	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCTGAGGCTGGACTCC	NA	NA	NA	NA	NA	NA	NA	NA	47907689	47883803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_47886625_47907562
ENSMUST00000096014.5	chr19	-	362	4	FSM	ENSMUSG00000071528.5	ENSMUST00000096014.5	362	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1293	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCTGGTTGTCTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	47079082	47071906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_47072009_47074393_47074487_47074572_47074669_47079011
ENSMUST00000096020.7	chr10	+	468	1	FSM	ENSMUSG00000071532.7	ENSMUST00000096020.7	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	NA	NA	NA	NA	NA	NA	NA	NA	14398821	14399289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_14398800_14399300
ENSMUST00000096030.7	chr6	-	2276	5	FSM	ENSMUSG00000071537.7	ENSMUST00000096030.7	2276	5	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCTCTGTCCCAGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	38614168	38603594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_38604661_38605019_38605124_38606698_38606845_38607215_38607318_38613310
ENSMUST00000096065.6	chr16	-	919	4	FSM	ENSMUSG00000071552.6	ENSMUST00000096065.6	919	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGTCTGTAAGTATGAAA	NA	NA	NA	NA	NA	NA	NA	NA	43484509	43469229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_43469598_43479801_43479900_43482338_43482669_43484386
ENSMUST00000096109.11	chr16	-	993	6	FSM	ENSMUSG00000023791.19	ENSMUST00000096109.11	993	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTAACTGGTTAGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	31918556	31903241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918287
ENSMUST00000096199.5	chr16	-	1136	7	FSM	ENSMUSG00000022822.17	ENSMUST00000096199.5	1136	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGGTATTTACTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	20245104	20219510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_20219822_20221009_20221085_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
ENSMUST00000096239.7	chr19	+	2753	9	FSM	ENSMUSG00000071645.7	ENSMUST00000096239.7	2753	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTTCTTTTGCATAC	NA	NA	NA	NA	NA	NA	NA	NA	8931210	8943574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_8931386_8932750_8932942_8936450_8936767_8937106_8937208_8939707_8940187_8941383_8941494_8941627_8941739_8941924_8942018_8942397
ENSMUST00000096242.5	chr19	-	1517	3	FSM	ENSMUSG00000071648.5	ENSMUST00000096242.5	1517	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTCTCCCGCTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	8906720	8904754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_8905252_8905341_8905589_8905947
ENSMUST00000096243.7	chr19	+	1603	5	FSM	ENSMUSG00000071649.7	ENSMUST00000096243.7	1603	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCTTCATGGTTTCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	8897737	8904600	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_8898013_8899169_8899345_8902901_8903263_8903445_8903737_8904099
ENSMUST00000096249.7	chr19	+	2598	2	FSM	ENSMUSG00000071652.9	ENSMUST00000096249.7	3274	2	0	676	0	-676	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGGTAGGCGCTTCCGGG	NA	NA	NA	NA	NA	NA	NA	NA	8870368	8874576	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_8870513_8872122
ENSMUST00000096251.10	chr19	+	537	4	FSM	ENSMUSG00000071653.10	ENSMUST00000096251.10	806	4	46	223	46	-223	multi-exon	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGACCGAAGAGGACACAG	NA	NA	NA	NA	NA	NA	NA	NA	8866262	8868022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774
ENSMUST00000096253.7	chr19	-	821	2	FSM	ENSMUSG00000071654.7	ENSMUST00000096253.7	821	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTGGAAAGACCATCTC	NA	NA	NA	NA	NA	NA	NA	NA	8858287	8857377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_8857981_8858069
ENSMUST00000096257.3	chr19	+	2583	2	FSM	ENSMUSG00000071656.8	ENSMUST00000096257.3	2583	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAATATACAGACTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	8828148	8831273	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_8828477_8829018
ENSMUST00000096261.5	chr19	-	890	8	FSM	ENSMUSG00000071662.5	ENSMUST00000096261.5	890	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGTTTGGTTTTATGT	NA	NA	NA	NA	NA	NA	NA	NA	8775941	8770490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8774599_8774760_8775587_8775698_8775822
ENSMUST00000096348.10	chrX	-	4151	23	FSM	ENSMUSG00000025665.17	ENSMUST00000096348.10	4151	23	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTAGTCTTGGTGTAGT	NA	NA	NA	NA	NA	NA	NA	NA	110372892	110297888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
ENSMUST00000096427.6	chr1	+	789	1	FSM	ENSMUSG00000090489.4	ENSMUST00000096427.6	789	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTACACTGAGTTTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	93349421	93350210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_93349400_93350200
ENSMUST00000096573.4	chr18	-	710	4	FSM	ENSMUSG00000024352.13	ENSMUST00000096573.4	710	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTGTTTTATCCCATTT	NA	NA	NA	NA	NA	NA	NA	NA	35795239	35793068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_35793407_35793496_35793628_35793844_35793911_35795064
ENSMUST00000096579.6	chr18	+	447	1	FSM	ENSMUSG00000071867.6	ENSMUST00000096579.6	447	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCTGTTGAGACCATTGG	NA	NA	NA	NA	NA	NA	NA	NA	15144302	15144749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_15144300_15144700
ENSMUST00000096639.12	chr7	-	2249	9	FSM	ENSMUSG00000070426.13	ENSMUST00000096639.12	2249	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCCTTTTTTTTTTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	101714365	101668343	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714272
ENSMUST00000096744.8	chr7	+	1162	3	FSM	ENSMUSG00000068566.14	ENSMUST00000096744.8	2813	3	41	1610	0	-546	multi-exon	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTACCCAGGTGATTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	3339099	3346255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_3339156_3341727_3341816_3345237
ENSMUST00000097014.7	chr15	-	1803	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGTGTTCTATATT	NA	NA	NA	NA	NA	NA	NA	NA	98851584	98847717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
ENSMUST00000097040.4	chr12	-	378	1	FSM	ENSMUSG00000072255.4	ENSMUST00000097040.4	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCTCATGTCAAATAAAG	NA	NA	NA	NA	NA	NA	NA	NA	54748491	54748113	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_54748100_54748500
ENSMUST00000097132.4	chr7	+	312	1	FSM	ENSMUSG00000072460.6	ENSMUST00000097132.4	312	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCAATCTTTAACTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	62126053	62126365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_62126100_62126400
ENSMUST00000097152.4	chr3	-	1258	1	FSM	ENSMUSG00000072387.4	ENSMUST00000097152.4	1258	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	302	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAATCAACATTGTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	47006074	47004816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_47004800_47006100
ENSMUST00000097166.5	chr10	-	429	1	FSM	ENSMUSG00000072407.5	ENSMUST00000097166.5	429	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTCCTAATTCCCCGAAC	NA	NA	NA	NA	NA	NA	NA	NA	74699248	74698819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_74698800_74699200
ENSMUST00000097193.3	chr1	+	787	3	FSM	ENSMUSG00000058267.14	ENSMUST00000097193.3	787	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAAAGTATGGTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	160022872	160027382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_160023116_160024515_160024675_160026997
ENSMUST00000097271.4	chr11	-	2082	2	FSM	ENSMUSG00000046879.8	ENSMUST00000097271.4	2082	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGCCTTTGTATTATCT	NA	NA	NA	NA	NA	NA	NA	NA	48762247	48756075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_48757831_48761920
ENSMUST00000097317.10	chr17	-	1931	13	FSM	ENSMUSG00000023942.16	ENSMUST00000097317.10	1931	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	45906829	45896128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906803
ENSMUST00000097368.10	chr17	-	3233	12	FSM	ENSMUSG00000025728.17	ENSMUST00000097368.10	3233	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACCAGCTTGGGTGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	26160909	26145401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153067_26153248_26153731_26153853_26153976_26154109_26155737_26156437_26160788
ENSMUST00000097393.11	chr17	+	1937	18	FSM	ENSMUSG00000036552.20	ENSMUST00000097393.11	2535	18	426	172	0	-172	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTGAGGATTTGGACTT	NA	NA	NA	NA	NA	NA	NA	NA	15261895	15283940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283863
ENSMUST00000097395.5	chr17	+	1684	12	FSM	ENSMUSG00000116895.2	ENSMUST00000097395.5	1684	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTGTAGGTGGGACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	15230437	15242711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_15230534_15231134_15231304_15231891_15232032_15233209_15233312_15233933_15234024_15236450_15236549_15237402_15237540_15238346_15238462_15239227_15239331_15239703_15239734_15240527_15240597_15242176
ENSMUST00000097420.7	chr17	-	1793	9	FSM	ENSMUSG00000095687.3	ENSMUST00000097420.7	1793	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	974	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTCTGGCTAGTGCGCAG	NA	NA	NA	NA	NA	NA	NA	NA	8366929	8346907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_8347719_8349056_8349132_8350874_8350921_8353735_8353850_8356719_8356791_8360427_8360486_8361349_8361403_8364373_8364435_8366425
ENSMUST00000097467.8	chr1	+	1606	5	FSM	ENSMUSG00000013973.13	ENSMUST00000097467.8	1606	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGGGACTCTGAAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	171158993	171169184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_171159167_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ENSMUST00000097522.11	chr18	+	794	7	FSM	ENSMUSG00000025421.16	ENSMUST00000097522.11	5477	7	35	4648	0	-746	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCGAGAGCTTCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	77031822	77058355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_77031882_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
ENSMUST00000097526.3	chr1	+	522	3	FSM	ENSMUSG00000050565.17	ENSMUST00000097526.3	2589	3	0	2067	0	-1860	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTGAGTTGCAATTAAGT	NA	NA	NA	NA	NA	NA	NA	NA	155916662	155927415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_155916749_155916820_155916881_155927039
ENSMUST00000097536.6	chr1	+	1737	3	FSM	ENSMUSG00000008475.14	ENSMUST00000097536.6	1737	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTAACTCTCCAGTTA	NA	NA	NA	NA	NA	NA	NA	NA	152642292	152651348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_152642619_152644611_152644685_152650010
ENSMUST00000097558.5	chr9	-	1534	14	FSM	ENSMUSG00000032126.17	ENSMUST00000097558.5	1534	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTGAGTCTGAGACCTT	NA	NA	NA	NA	NA	NA	NA	NA	44253678	44247648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44253517
ENSMUST00000097561.9	chr1	+	968	6	FSM	ENSMUSG00000026421.15	ENSMUST00000097561.9	1828	6	0	860	0	-860	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGGTCCCTTTCCCCACA	NA	NA	NA	NA	NA	NA	NA	NA	135647798	135679110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_135647932_135667137_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
ENSMUST00000097570.3	chr1	+	432	1	FSM	ENSMUSG00000073559.3	ENSMUST00000097570.3	432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGACAATGGAAACATA	NA	NA	NA	NA	NA	NA	NA	NA	134037105	134037537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_134037100_134037500
ENSMUST00000097642.4	chr1	-	438	3	FSM	ENSMUSG00000073616.11	ENSMUST00000097642.4	438	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	NA	NA	NA	NA	NA	NA	NA	92569707	92564866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_92565126_92567408_92567482_92569601
ENSMUST00000097646.5	chr18	+	1065	5	FSM	ENSMUSG00000024273.9	ENSMUST00000097646.5	1065	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAATGGTAGTATTTAATT	NA	NA	NA	NA	NA	NA	NA	NA	24603925	24610855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_24604038_24604118_24604142_24606006_24606207_24608581_24608782_24610325
ENSMUST00000097650.10	chr1	+	2760	23	FSM	ENSMUSG00000026305.16	ENSMUST00000097650.10	2760	23	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTTAAAAATGAAACGTTA	NA	NA	NA	NA	NA	NA	NA	NA	90981228	91056640	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_90981446_90996284_90996372_91001045_91001064_91004665_91004714_91006112_91006158_91006752_91006804_91012667_91012728_91016355_91016434_91019323_91019390_91021281_91021360_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91036301_91036395_91038076_91038170_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
ENSMUST00000097670.10	chr18	-	2088	10	FSM	ENSMUSG00000024293.17	ENSMUST00000097670.10	2088	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATGTACTTGATACAAT	NA	NA	NA	NA	NA	NA	NA	NA	10610129	10566610	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10596338_10596442_10610025
ENSMUST00000097682.4	chr18	+	411	1	FSM	ENSMUSG00000073640.4	ENSMUST00000097682.4	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATATTTTTGTTTTGGTCA	NA	NA	NA	NA	NA	NA	NA	NA	6332631	6333042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_6332600_6333000
ENSMUST00000097694.11	chr1	+	1066	9	FSM	ENSMUSG00000049339.17	ENSMUST00000097694.11	2561	9	194	1301	186	-1297	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCCTCTTCACTTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	75119623	75123256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_75119773_75120012_75120120_75120566_75120598_75120947_75121084_75121265_75121351_75121603_75121748_75121902_75121998_75122323_75122460_75123073
ENSMUST00000097737.5	chr4	-	1243	8	FSM	ENSMUSG00000051557.16	ENSMUST00000097737.5	1243	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGTCTGTTTATTACT	NA	NA	NA	NA	NA	NA	NA	NA	155976238	155973318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ENSMUST00000097747.9	chr4	+	1479	3	FSM	ENSMUSG00000073684.14	ENSMUST00000097747.9	1479	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTTGTTTCCTTCATAG	NA	NA	NA	NA	NA	NA	NA	NA	155334459	155341141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_155335108_155335212_155335494_155340591
ENSMUST00000097908.4	chr4	+	832	3	FSM	ENSMUSG00000028643.12	ENSMUST00000097908.4	832	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTTCTTGCTTTAGAG	NA	NA	NA	NA	NA	NA	NA	NA	119052692	119058495	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_119052973_119053068_119053219_119058093
ENSMUST00000097921.10	chr4	-	2471	3	FSM	ENSMUSG00000028551.15	ENSMUST00000097921.10	2471	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACATTTTCCTGTGATTTT	NA	NA	NA	NA	NA	NA	NA	NA	109524386	109518072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_109518824_109522214_109522355_109522806
ENSMUST00000098104.10	chr4	-	2583	7	FSM	ENSMUSG00000028459.12	ENSMUST00000098104.10	2583	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTATT	NA	NA	NA	NA	NA	NA	NA	NA	43454627	43446461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_43448037_43448259_43448416_43449451_43449529_43450069_43450222_43452306_43452640_43454241_43454350_43454445
ENSMUST00000098242.4	chr4	+	1057	9	FSM	ENSMUSG00000073987.5	ENSMUST00000098242.4	1965	9	0	908	0	-908	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTATATGTTTGACTGAA	NA	NA	NA	NA	NA	NA	NA	NA	20042051	20065842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_20042283_20046202_20046315_20049791_20049843_20052663_20052749_20054063_20054203_20057936_20058044_20058138_20058230_20063998_20064137_20065739
ENSMUST00000098252.5	chr7	+	1847	8	FSM	ENSMUSG00000030704.15	ENSMUST00000098252.5	3110	8	0	1263	0	-1263	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAGATGTCTTTCTGATC	NA	NA	NA	NA	NA	NA	NA	NA	100256896	100289212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_100257501_100275758_100275818_100277610_100277665_100278872_100278979_100280948_100281061_100283851_100283946_100285901_100285969_100288461
ENSMUST00000098300.6	chr7	+	2039	13	FSM	ENSMUSG00000035704.18	ENSMUST00000098300.6	2039	13	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCACATTCACTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	97020812	97041392	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892_97033014_97036008_97036149_97037655_97037796_97039448_97039547_97040095_97040169_97040734
ENSMUST00000098340.7	chr9	+	1749	14	FSM	ENSMUSG00000032497.20	ENSMUST00000098340.7	3191	14	0	1442	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGATTTTGTTTGTAGTT	NA	NA	NA	NA	NA	NA	NA	NA	110947202	111053294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_110947458_110948707_110948780_110970257_110970401_110990370_110990458_111017829_111017875_111019235_111019353_111028732_111028904_111034822_111034916_111043208_111043342_111044996_111045047_111048749_111048871_111051225_111051306_111052333_111052439_111053017
ENSMUST00000098365.4	chr8	+	1959	6	FSM	ENSMUSG00000074063.11	ENSMUST00000098365.4	1959	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCCTGAGGAGTCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	120163900	120172995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_120164033_120168133_120168242_120169171_120169309_120169654_120169847_120169930_120170023_120171697
ENSMUST00000098402.5	chr7	-	2076	11	FSM	ENSMUSG00000102252.6	ENSMUST00000098402.5	2076	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGACTTATTCTCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	59789967	59632249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59781997_59782146_59789888
ENSMUST00000098444.9	chr8	+	1273	3	FSM	ENSMUSG00000005699.17	ENSMUST00000098444.9	1273	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	106427785	106430125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_106427950_106428805_106429029_106429239
ENSMUST00000098464.6	chr8	+	1804	3	FSM	ENSMUSG00000054400.17	ENSMUST00000098464.6	1804	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAAAAAAACCCA	NA	NA	NA	NA	NA	NA	NA	NA	104977561	104991570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_104977728_104983916_104984076_104990091
ENSMUST00000098500.5	chr9	+	3481	2	FSM	ENSMUSG00000035274.14	ENSMUST00000098500.5	3481	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCTCAGGTTATGAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	85724917	85729093	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_85725009_85725703
ENSMUST00000098537.4	chr9	+	875	7	FSM	ENSMUSG00000074183.4	ENSMUST00000098537.4	875	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	78137937	78149966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_78138013_78139499_78139609_78142365_78142418_78143211_78143345_78146766_78146909_78148808_78148941_78149734
ENSMUST00000098571.5	chr8	+	721	2	FSM	ENSMUSG00000074203.5	ENSMUST00000098571.5	721	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTGGTGGCTCACATCT	NA	NA	NA	NA	NA	NA	NA	NA	85449635	85453473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_85449901_85453017
ENSMUST00000098585.4	chr7	+	1733	1	FSM	ENSMUSG00000074210.4	ENSMUST00000098585.4	1733	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATCTGTCTCATCTT	NA	NA	NA	NA	NA	NA	NA	NA	30021164	30022897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_30021200_30022900
ENSMUST00000098586.5	chr7	-	2490	1	FSM	ENSMUSG00000074211.5	ENSMUST00000098586.5	2490	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTTGATTCTTTTATTA	NA	NA	NA	NA	NA	NA	NA	NA	30023320	30020830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_30020800_30023300
ENSMUST00000098624.4	chr3	-	1320	1	FSM	ENSMUSG00000074236.4	ENSMUST00000098624.4	1320	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCTTGTAGAGGCAATGA	NA	NA	NA	NA	NA	NA	NA	NA	128748747	128747427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_128747400_128748700
ENSMUST00000098751.10	chr3	+	929	3	FSM	ENSMUSG00000056260.16	ENSMUST00000098751.10	929	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCCCACTGGATGCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	106592302	106643220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_106592450_106641673_106641956_106642720
ENSMUST00000098782.4	chr9	-	1786	8	FSM	ENSMUSG00000060594.7	ENSMUST00000098782.4	1786	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTCTGTGTCTACAGCC	NA	NA	NA	NA	NA	NA	NA	NA	50988394	50968079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_50968957_50970756_50970857_50973482_50973567_50974536_50974573_50979338_50979497_50985147_50985446_50987621_50987646_50988185
ENSMUST00000098862.9	chr17	-	796	4	FSM	ENSMUSG00000024121.14	ENSMUST00000098862.9	796	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTAGAGTGCTCCTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	24388651	24383126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_24383583_24383672_24383857_24388179_24388261_24388576
ENSMUST00000098864.5	chr8	+	432	1	FSM	ENSMUSG00000074412.5	ENSMUST00000098864.5	432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTTGACAATGAAAACACA	NA	NA	NA	NA	NA	NA	NA	NA	25944288	25944720	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_25944300_25944700
ENSMUST00000098867.4	chr3	-	784	2	FSM	ENSMUSG00000093424.4	ENSMUST00000098867.4	784	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	95222428	95214982	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_95215452_95222113
ENSMUST00000098910.3	chr3	+	1123	3	FSM	ENSMUSG00000074457.11	ENSMUST00000098910.3	1123	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGCTGCTTCCTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	90448467	90450458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_90448625_90449300_90449480_90449671
ENSMUST00000098911.10-1	chr3	+	841	3	FSM	ENSMUSG00000074457.11	ENSMUST00000098911.10	1127	3	0	286	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTGTGTGCTCTCGCAA	NA	NA	NA	NA	NA	NA	NA	NA	90444560	90450169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_90444725_90449300_90449480_90449671
ENSMUST00000098956.3	chr3	-	471	4	FSM	ENSMUSG00000074486.3	ENSMUST00000098956.3	471	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTGGAGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	88286006	88285042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_88285310_88285515_88285574_88285716_88285750_88285893
ENSMUST00000098980.5	chr3	-	461	1	FSM	ENSMUSG00000074506.5	ENSMUST00000098980.5	461	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAATCTGCCATGAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	87115312	87114851	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_87114900_87115300
ENSMUST00000098994.7	chr9	+	331	4	FSM	ENSMUSG00000048758.15	ENSMUST00000098994.7	583	4	-84	336	0	-336	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCCATCAAGGCCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	106306652	106308371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_106306776_106307174_106307214_106307506_106307572_106308267
ENSMUST00000099049.4	chr9	+	675	4	FSM	ENSMUSG00000095547.2	ENSMUST00000099049.4	675	4	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTCCATGTCCTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	3017407	3019022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_3017474_3017477_3017611_3017786_3018138_3018897
ENSMUST00000099050.4	chr9	+	669	5	FSM	ENSMUSG00000074564.4	ENSMUST00000099050.4	669	5	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTCCAGGTCCTACAGT	NA	NA	NA	NA	NA	NA	NA	NA	3015653	3017210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_3015726_3015729_3015818_3016460_3016734_3016909_3017023_3017087
ENSMUST00000099051.11	chr9	+	639	5	FSM	ENSMUSG00000095891.8	ENSMUST00000099051.11	639	5	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATTCCAAGTCTTACAGG	NA	NA	NA	NA	NA	NA	NA	NA	3029194	3031071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_3029228_3029231_3029560_3030497_3030653_3030946_3030950_3030951
ENSMUST00000099056.4	chr9	+	669	3	FSM	ENSMUSG00000095891.8	ENSMUST00000099056.4	669	3	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTCCATGTCCTACAGT	NA	NA	NA	NA	NA	NA	NA	NA	3032084	3032822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_3032151_3032154_3032635_3032699
ENSMUST00000099075.4	chr3	+	274	3	FSM	ENSMUSG00000074579.15	ENSMUST00000099075.4	2461	3	40	2147	0	-2147	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCAAGAAAAGCTGCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	65573688	65591453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_65573733_65576510_65576600_65591312
ENSMUST00000099086.4	chr3	+	453	2	FSM	ENSMUSG00000027694.10	ENSMUST00000099086.4	453	2	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCAAGGCCCCGGCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	60784445	60785008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_60784476_60784585
ENSMUST00000099087.8	chr3	+	5655	10	FSM	ENSMUSG00000027763.14	ENSMUST00000099087.8	5655	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTGCCTGAGATTGAG	NA	NA	NA	NA	NA	NA	NA	NA	60408599	60537171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_60408845_60436176_60437226_60503014_60503186_60511114_60511316_60520683_60520942_60523040_60523195_60528843_60528880_60529566_60529662_60532544_60532620_60533800
ENSMUST00000099106.10	chr3	+	412	5	FSM	ENSMUSG00000074604.10	ENSMUST00000099106.10	603	5	35	156	0	-151	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAGCAGATTCCTGAACG	NA	NA	NA	NA	NA	NA	NA	NA	51568634	51589940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_51568728_51571931_51572032_51584985_51585057_51589217_51589300_51589874
ENSMUST00000099130.9	chr3	-	1070	5	FSM	ENSMUSG00000050174.16	ENSMUST00000099130.9	1070	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTGTAGCTCTAATCCT	NA	NA	NA	NA	NA	NA	NA	NA	37473739	37459134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_37459641_37463656_37463712_37466508_37466565_37470849_37471054_37473490
ENSMUST00000099141.3	chr2	-	1331	1	FSM	ENSMUSG00000074629.4	ENSMUST00000238678.2	1597	1	266	0	266	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAATTAAA	NA	NA	NA	NA	NA	NA	NA	NA	156699866	156698535	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_156698500_156699900
ENSMUST00000099148.3	chr13	-	1123	1	FSM	ENSMUSG00000074635.4	ENSMUST00000238285.2	1133	1	1	9	1	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAACTGCCGGGTCTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	119624919	119623796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_119623800_119624900
ENSMUST00000099157.4	chr10	-	2311	6	FSM	ENSMUSG00000025402.13	ENSMUST00000099157.4	2311	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCATGGCCCCCTTCCCCT	NA	NA	NA	NA	NA	NA	NA	NA	127502501	127496787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_127497649_127499000_127499134_127499218_127499271_127499608_127499743_127500133_127501008_127502244
ENSMUST00000099173.11	chr2	-	2542	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2741	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCATTGCTTTTGTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	154734855	154713329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
ENSMUST00000099200.3	chr2	-	1311	1	FSM	ENSMUSG00000074676.3	ENSMUST00000099200.3	1311	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	349	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGGTCCGCCTGCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	152775128	152773817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_152773800_152775100
ENSMUST00000099272.3	chr5	+	1067	6	FSM	ENSMUSG00000041453.13	ENSMUST00000099272.3	1067	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	NA	NA	NA	NA	NA	NA	NA	146770011	146772796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_146770551_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUST00000099295.6	chr13	+	2140	13	FSM	ENSMUSG00000021671.10	ENSMUST00000099295.6	5183	13	66	2977	66	142	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCATCCTTTGTAACTGT	NA	NA	NA	NA	NA	NA	NA	NA	96524867	96551268	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_96525040_96526730_96526871_96528095_96528184_96529734_96529853_96530999_96531078_96533147_96533339_96535201_96535379_96537257_96537363_96538083_96538264_96539387_96539542_96540913_96541192_96547097_96547275_96550986
ENSMUST00000099304.4	chr2	-	2127	13	FSM	ENSMUSG00000039033.12	ENSMUST00000099304.4	2127	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTGTGACTGCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	139908705	139675399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
ENSMUST00000099353.6	chr19	+	1657	4	FSM	ENSMUSG00000025066.11	ENSMUST00000099353.6	1657	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2233	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	NA	NA	NA	NA	NA	NA	NA	47720120	47724027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_47720261_47721068_47721428_47721957_47722351_47723262
ENSMUST00000099356.10	chr13	+	1603	8	FSM	ENSMUSG00000074794.11	ENSMUST00000099356.10	4101	8	0	2498	0	-776	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGATGGCAAACACATGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	81031528	81041663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_81032049_81035524_81035607_81037207_81037356_81038214_81038318_81038652_81038910_81039180_81039344_81039606_81039762_81041488
ENSMUST00000099358.5	chr13	+	2242	9	FSM	ENSMUSG00000064138.15	ENSMUST00000099358.5	2242	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTACTTGAAATTTTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	77856812	78312900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_77856973_77907546_77907649_77909956_77910058_77973441_77973508_78050772_78050995_78100103_78100224_78147704_78147822_78154506_78154592_78311631
ENSMUST00000099371.5	chr13	+	276	1	FSM	ENSMUSG00000074800.5	ENSMUST00000099371.5	276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	301	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAGCCCTGCTGTCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	75793014	75793290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_75793000_75793300
ENSMUST00000099376.11	chr19	+	1600	5	FSM	ENSMUSG00000047731.18	ENSMUST00000099376.11	3911	5	-30	2341	0	-2341	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTAAGGTGGTGCTCAGC	NA	NA	NA	NA	NA	NA	NA	NA	46587522	46643480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_46587733_46595150_46595199_46632791_46632895_46640912_46641075_46642403
ENSMUST00000099412.3	chr13	+	1652	3	FSM	ENSMUSG00000074826.11	ENSMUST00000099412.3	1652	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTATGTGTGTACCAAG	NA	NA	NA	NA	NA	NA	NA	NA	67053478	67057230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_67053686_67055214_67055374_67055944
ENSMUST00000099431.6	chr14	-	468	1	FSM	ENSMUSG00000063556.6	ENSMUST00000099431.6	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	NA	NA	NA	NA	NA	NA	NA	NA	77489754	77489286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_77489300_77489800
ENSMUST00000099439.4	chr10	+	2199	3	FSM	ENSMUSG00000094076.8	ENSMUST00000099439.4	1497	3	0	-702	0	702	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCATGCAAGTTTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	81656960	81659896	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_81657088_81657287_81657349_81657885
ENSMUST00000099441.6	chr13	-	2303	12	FSM	ENSMUSG00000033114.12	ENSMUST00000099441.6	2303	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTTATGGTTTTTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	64277169	64244121	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64276999
ENSMUST00000099489.9	chr2	+	1632	10	FSM	ENSMUSG00000023572.17	ENSMUST00000099489.9	1632	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTGTCCTCTGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	120838928	120847385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_120839259_120839523_120839604_120840307_120840390_120841914_120842012_120842163_120842238_120842833_120842911_120843179_120843458_120844438_120844500_120846611_120846659_120846879
ENSMUST00000099489.9-0	chr2	+	1045	10	FSM	ENSMUSG00000023572.17	ENSMUST00000099489.9	1632	10	256	331	232	60	multi-exon	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCTATTTATTTTTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	120839184	120847054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_120839259_120839523_120839604_120840307_120840390_120841914_120842012_120842163_120842238_120842833_120842911_120843179_120843458_120844438_120844500_120846611_120846659_120846879
ENSMUST00000099503.10	chr13	+	822	8	FSM	ENSMUSG00000025875.15	ENSMUST00000099503.10	822	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGCCAGGGGTGATGGCC	NA	NA	NA	NA	NA	NA	NA	NA	54937407	54944035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943281_54943778_54943896_54943969
ENSMUST00000099548.10	chr16	+	1611	8	FSM	ENSMUSG00000039903.19	ENSMUST00000099548.10	1611	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTGTACATTAATAATTC	NA	NA	NA	NA	NA	NA	NA	NA	90623633	90701586	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_90623864_90663142_90663340_90666453_90666578_90672926_90673080_90687417_90687562_90691465_90691544_90694251_90694342_90700991
ENSMUST00000099556.2	chr19	-	855	1	FSM	ENSMUSG00000074922.2	ENSMUST00000099556.2	855	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTCATCTTGAATCCCC	NA	NA	NA	NA	NA	NA	NA	NA	24454720	24453865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_24453900_24454700
ENSMUST00000099582.4	chr13	+	962	6	FSM	ENSMUSG00000021420.14	ENSMUST00000099582.4	962	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGAACTGGAGTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	36301840	36721483	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_36301989_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
ENSMUST00000099626.5	chr2	-	2267	1	FSM	ENSMUSG00000074971.5	ENSMUST00000099626.5	2267	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTTCAATTCTTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	110193528	110191261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_110191300_110193500
ENSMUST00000099646.10	chr16	-	1554	9	FSM	ENSMUSG00000022722.19	ENSMUST00000099646.10	1554	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAACTAGAGTGTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	59459754	59433690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_59434208_59439028_59439042_59439157_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452824_59459292
ENSMUST00000099683.2	chr2	-	660	5	FSM	ENSMUSG00000075014.2	ENSMUST00000099683.2	660	5	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAGTAGGTACACACACAA	NA	NA	NA	NA	NA	NA	NA	NA	98497646	98496891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_98497015_98497079_98497386_98497410_98497423_98497423_98497574_98497577
ENSMUST00000099696.8	chr2	-	1657	9	FSM	ENSMUSG00000027215.14	ENSMUST00000099696.8	1657	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTCTGAAGAGGCGGTA	NA	NA	NA	NA	NA	NA	NA	NA	93292756	93249455	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93292674
ENSMUST00000099735.6	chr13	-	3164	3	FSM	ENSMUSG00000075054.6	ENSMUST00000099735.6	8744	3	21	5559	21	1946	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAACATAACTAGGTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	18167913	18161473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_18164368_18166212_18166335_18167765
ENSMUST00000099736.4	chr13	-	853	1	FSM	ENSMUSG00000075053.4	ENSMUST00000099736.4	853	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTTTGAGTAGAGTATC	NA	NA	NA	NA	NA	NA	NA	NA	18206178	18205325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_18205300_18206200
ENSMUST00000099805.3	chr13	-	857	5	FSM	ENSMUSG00000056457.7	ENSMUST00000099805.3	857	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1587	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAATGGAGAATTAGTC	NA	NA	NA	NA	NA	NA	NA	NA	12814968	12805704	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_12805997_12806880_12807064_12808176_12808285_12811719_12811896_12814870
ENSMUST00000099820.10	chr13	-	2736	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099820.10	2736	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGGAATGAATACTCTC	NA	NA	NA	NA	NA	NA	NA	NA	12476384	12454304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476121
ENSMUST00000099821.10	chr13	-	2792	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099821.10	2792	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATACTCTCTGGAATA	NA	NA	NA	NA	NA	NA	NA	NA	12476619	12454297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
ENSMUST00000099946.6	chr13	-	1440	10	FSM	ENSMUSG00000021215.16	ENSMUST00000099946.6	3871	10	35	2396	35	-1081	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCAATGATGTGTTCCAT	NA	NA	NA	NA	NA	NA	NA	NA	3943543	3934413	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_3934474_3934802_3934990_3936047_3936219_3936537_3936796_3937370_3937448_3937570_3937668_3937977_3938041_3938354_3938523_3938870_3938979_3943292
ENSMUST00000099955.4	chr19	-	1197	2	FSM	ENSMUSG00000024939.7	ENSMUST00000099955.4	1197	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGATTGCCTGGTTAATT	NA	NA	NA	NA	NA	NA	NA	NA	5779679	5778114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5778897_5779264
ENSMUST00000099988.3	chr19	-	561	1	FSM	ENSMUSG00000075268.3	ENSMUST00000099988.3	561	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	988	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGCTGCACAGGGGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	16244985	16244424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_16244400_16245000
ENSMUST00000100015.6	chr2	-	905	8	FSM	ENSMUSG00000027108.16	ENSMUST00000100015.6	905	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCGTGTTTTGTTCAATG	NA	NA	NA	NA	NA	NA	NA	NA	73044677	72967870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_72968000_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
ENSMUST00000100026.10	chr16	+	3049	11	FSM	ENSMUSG00000038127.16	ENSMUST00000100026.10	7089	11	0	4040	0	1795	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTGGAAATTTTGTTACA	NA	NA	NA	NA	NA	NA	NA	NA	27207618	27266928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_27207888_27224396_27224460_27225400_27225528_27228073_27228165_27235997_27236116_27254311_27254428_27255117_27255163_27255247_27255353_27257050_27257128_27263293_27263401_27264997
ENSMUST00000100162.5	chr15	+	563	9	FSM	ENSMUSG00000060992.10	ENSMUST00000100162.5	1676	9	2	1111	0	16	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTGCCCCTCAAAACCC	NA	NA	NA	NA	NA	NA	NA	NA	103181338	103207184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313_103206353_103207119
ENSMUST00000100164.5	chr15	+	1983	2	FSM	ENSMUSG00000075394.5	ENSMUST00000100164.5	1983	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCAATGTCTGATGGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	102942820	102945278	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102943588_102944062
ENSMUST00000100171.3	chr2	+	2613	8	FSM	ENSMUSG00000026864.14	ENSMUST00000100171.3	2613	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	940	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGGTGTGTCTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	34662106	34666543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
ENSMUST00000100201.10	chr11	+	1374	6	FSM	ENSMUSG00000061878.17	ENSMUST00000100201.10	1800	6	0	426	0	-413	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTGTGGATGGAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	116422736	116427070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_116422913_116424795_116425000_116425677_116425828_116425905_116426001_116426077_116426194_116426437
ENSMUST00000100215.11	chr2	-	1749	12	FSM	ENSMUSG00000026860.17	ENSMUST00000100215.11	1749	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGATCTCAGTCCATGAG	NA	NA	NA	NA	NA	NA	NA	NA	30249252	30234820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUST00000100429.11	chr2	-	2451	13	FSM	ENSMUSG00000002107.19	ENSMUST00000100429.11	7491	13	2	5038	0	64	multi-exon	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTCCAGACTAAGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	6726424	6549553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_6550487_6551852_6552025_6554642_6554787_6558595_6558776_6565481_6565602_6590784_6590920_6604844_6604909_6608834_6608994_6612692_6612773_6620498_6620634_6629481_6629531_6668925_6669009_6726227
ENSMUST00000100483.3	chr5	-	1073	4	FSM	ENSMUSG00000029610.14	ENSMUST00000100483.3	1073	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTATTTTATTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	143846665	143839521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846518
ENSMUST00000100486.6	chr15	-	676	3	FSM	ENSMUSG00000005354.17	ENSMUST00000100486.6	676	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACGGGCTCACAACCAT	NA	NA	NA	NA	NA	NA	NA	NA	77813197	77810597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_77810920_77811891_77812155_77813106
ENSMUST00000100487.6	chr5	+	4325	15	FSM	ENSMUSG00000029613.16	ENSMUST00000100487.6	4325	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGACACTGTTGGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	143803542	143841069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_143803764_143808680_143808840_143810568_143810703_143812477_143812516_143814393_143814494_143816252_143816334_143818970_143819071_143820790_143820849_143821473_143821799_143823667_143823780_143826213_143826315_143833982_143834095_143834292_143834376_143835831_143836066_143838602
ENSMUST00000100492.5	chr14	+	359	2	FSM	ENSMUSG00000075573.5	ENSMUST00000100492.5	359	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATATCCTGCGTCCGTA	NA	NA	NA	NA	NA	NA	NA	NA	63235525	63238609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_63235609_63238333
ENSMUST00000100497.11	chr5	-	1920	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTCTGTGGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	142892509	142888869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
ENSMUST00000100528.5	chr11	-	3997	7	FSM	ENSMUSG00000014349.8	ENSMUST00000100528.5	3997	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTTGGAATGAACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	95956214	95938257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_95941241_95942559_95942651_95946663_95946777_95949141_95949254_95951762_95951951_95953820_95953894_95955777
ENSMUST00000100555.4	chr15	-	1278	1	FSM	ENSMUSG00000075609.4	ENSMUST00000100555.4	1278	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	927	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGCCATCCTTTGTCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	73953360	73952082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_73952100_73953400
ENSMUST00000100641.3	chr5	+	1148	2	FSM	ENSMUSG00000072573.3	ENSMUST00000100641.3	1148	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGAGTTTGTCTGGATTT	NA	NA	NA	NA	NA	NA	NA	NA	134705343	134708999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_134705654_134708161
ENSMUST00000100687.4	chr14	+	564	1	FSM	ENSMUSG00000072594.4	ENSMUST00000100687.4	564	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGATTTGGATCTGACTT	NA	NA	NA	NA	NA	NA	NA	NA	44834121	44834685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_44834100_44834700
ENSMUST00000100705.11	chr11	-	1447	3	FSM	ENSMUSG00000018648.16	ENSMUST00000100705.11	1447	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTTATTAATCATTTTG	NA	NA	NA	NA	NA	NA	NA	NA	83959183	83938866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_83940137_83941657_83941747_83959095
ENSMUST00000100729.9	chr5	+	2597	6	FSM	ENSMUSG00000029440.16	ENSMUST00000100729.9	2597	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCCTCTTGGGATCAGC	NA	NA	NA	NA	NA	NA	NA	NA	123366252	123388194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_123366508_123372656_123372760_123377604_123377814_123379894_123379997_123384256_123384346_123386355
ENSMUST00000100764.10	chr13	+	1248	5	FSM	ENSMUSG00000021504.15	ENSMUST00000100764.10	2195	5	169	778	0	-777	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGCCTCAGCAGGGACATA	NA	NA	NA	NA	NA	NA	NA	NA	55747877	55757478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_55748006_55751832_55752196_55755009_55755236_55756154_55756239_55757031
ENSMUST00000100778.5	chr6	-	1590	5	FSM	ENSMUSG00000072660.6	ENSMUST00000100778.5	1590	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTCAAGACCCTTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	147377313	147339859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_147340222_147344290_147344406_147357305_147357581_147373691_147373830_147376613
ENSMUST00000100799.9	chr14	+	802	4	FSM	ENSMUSG00000012405.17	ENSMUST00000100799.9	802	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	NA	NA	NA	NA	NA	NA	NA	4198725	4200736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_4198852_4199235_4199418_4199652_4199790_4200379
ENSMUST00000100812.4	chr11	+	3476	19	FSM	ENSMUSG00000011877.14	ENSMUST00000100812.4	3476	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAGGTGGGGCTTAGC	NA	NA	NA	NA	NA	NA	NA	NA	77384396	77398612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_77384461_77389790_77389925_77390342_77390456_77390564_77390671_77391173_77391392_77391472_77391568_77391897_77391941_77393843_77393893_77394181_77394255_77394746_77394845_77395197_77395310_77395424_77395559_77395693_77396078_77396148_77396203_77396329_77396417_77396505_77396580_77396705_77396889_77397004_77397069_77397221
ENSMUST00000100841.9	chr6	-	2491	21	FSM	ENSMUSG00000015766.15	ENSMUST00000100841.9	4151	21	258	1402	258	-893	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCTGCGAGCGACTCGGG	NA	NA	NA	NA	NA	NA	NA	NA	137547757	137456067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_137456128_137459149_137459280_137460539_137460721_137467214_137467438_137476579_137476724_137477532_137477642_137482385_137482520_137486079_137486261_137489146_137489296_137491275_137491351_137491700_137491790_137494068_137494196_137496440_137496515_137499150_137499288_137499827_137499911_137504085_137504236_137504365_137504528_137505522_137505591_137514615_137514693_137516319_137516400_137547699
ENSMUST00000100847.5	chr5	-	682	2	FSM	ENSMUSG00000072692.8	ENSMUST00000100847.5	682	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGGTCTTCTCTTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	115248327	115240981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_115241588_115248251
ENSMUST00000100850.6	chr5	-	420	2	FSM	ENSMUSG00000072694.9	ENSMUST00000100850.6	420	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGGTTATCTATGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	114961506	114960499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_114960787_114961373
ENSMUST00000100950.10	chr11	-	545	4	FSM	ENSMUSG00000020831.19	ENSMUST00000100950.10	545	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACCTGGGACTCTAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	70128504	70126187	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_70126295_70126849_70127038_70127702_70127805_70128356
ENSMUST00000100955.3	chr17	+	879	3	FSM	ENSMUSG00000034345.15	ENSMUST00000100955.3	879	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCTTTTACCCTGGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	6130204	6135407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_6130350_6131076_6131150_6134746
ENSMUST00000101017.9	chr11	-	1646	8	FSM	ENSMUSG00000018736.15	ENSMUST00000101017.9	1646	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGTGCACGCTTATAT	NA	NA	NA	NA	NA	NA	NA	NA	68762684	68720128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68762606
ENSMUST00000101029.4	chr12	+	4001	23	FSM	ENSMUSG00000037679.10	ENSMUST00000101029.4	4001	23	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTGGAGAGGCTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	112555217	112581391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_112555330_112566427_112566828_112567762_112567879_112567956_112568117_112568611_112568646_112569514_112569657_112570145_112570288_112570447_112571297_112571806_112571953_112572227_112572290_112572677_112572781_112573406_112573493_112573928_112574030_112574762_112574834_112574910_112575019_112575281_112575353_112576106_112576228_112576552_112576718_112576895_112576999_112577128_112577291_112577843_112578471_112578981_112579039_112581328
ENSMUST00000101049.9	chr11	+	2884	24	FSM	ENSMUSG00000020549.15	ENSMUST00000101049.9	2884	24	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTTCAGTGTGGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	64869899	64892426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820
ENSMUST00000101070.5	chr6	+	1201	2	FSM	ENSMUSG00000051256.11	ENSMUST00000101070.5	1201	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTGTTGGAGATTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	113419529	113425190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_113419759_113424218
ENSMUST00000101144.10	chr12	+	1541	10	FSM	ENSMUSG00000021007.15	ENSMUST00000101144.10	1541	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCACATATTTATTATTGC	NA	NA	NA	NA	NA	NA	NA	NA	98594425	98636074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_98594594_98598221_98598297_98600482_98600579_98603824_98603873_98614607_98614742_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
ENSMUST00000101168.4	chr12	-	1840	2	FSM	ENSMUSG00000079029.3	ENSMUST00000101168.4	1840	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAAAGAAAAAGATCAAT	NA	NA	NA	NA	NA	NA	NA	NA	88241270	88237409	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_88239059_88241079
ENSMUST00000101199.3	chr2	-	208	1	FSM	ENSMUSG00000069188.6	ENSMUST00000101199.3	208	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	285	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTGCAGCTGGTGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	4964563	4964355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_4964400_4964600
ENSMUST00000101208.6	chr5	+	516	2	FSM	ENSMUSG00000072941.6	ENSMUST00000101208.6	3738	2	0	3222	0	-3222	multi-exon	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACCATCAGCCACGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	52521132	52525538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_52521395_52525284
ENSMUST00000101285.10	chr6	-	623	3	FSM	ENSMUSG00000073002.10	ENSMUST00000101285.10	623	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTCTCTCTCTCTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	72357405	72346010	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_72346454_72347176_72347315_72357363
ENSMUST00000101293.11	chr11	+	937	3	FSM	ENSMUSG00000020346.17	ENSMUST00000101293.11	2729	3	53	1739	53	-1704	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTCAAGTTCCCGGCCGC	NA	NA	NA	NA	NA	NA	NA	NA	49141391	49152118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_49141483_49142376_49142502_49151397
ENSMUST00000101301.10	chr6	+	2299	15	FSM	ENSMUSG00000052337.16	ENSMUST00000101301.10	2299	15	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTAGGAAGAGTTGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	71808396	71851914	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUST00000101340.11	chr11	-	700	6	FSM	ENSMUSG00000020415.17	ENSMUST00000101340.11	700	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGATTGTGAATACTTA	NA	NA	NA	NA	NA	NA	NA	NA	43317029	43311095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317000
ENSMUST00000101343.2	chr6	+	1354	5	FSM	ENSMUSG00000029910.15	ENSMUST00000101343.2	1725	5	0	371	0	-371	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATTATACCTTCTGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	66512451	66517604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754
ENSMUST00000101426.11	chr6	+	1540	7	FSM	ENSMUSG00000023367.15	ENSMUST00000101426.11	1540	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTTGTATATTTTTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	48818445	48822803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_48818524_48819137_48819336_48819522_48819634_48820718_48820776_48820894_48821114_48821601_48821713_48822037
ENSMUST00000101445.11	chr6	+	1419	5	FSM	ENSMUSG00000045466.19	ENSMUST00000101445.11	2761	5	57	1285	57	-1285	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCAGTGCACCCAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	47930380	47940949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_47930517_47932750_47933105_47934409_47934537_47939458_47939567_47940255
ENSMUST00000101522.3	chr5	-	2110	1	FSM	ENSMUSG00000073147.4	ENSMUST00000101522.3	2110	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTGTGGAATAACCTTT	NA	NA	NA	NA	NA	NA	NA	NA	23638917	23636807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_23636800_23638900
ENSMUST00000101526.9	chr11	+	1089	5	FSM	ENSMUSG00000018572.11	ENSMUST00000101526.9	1706	5	0	617	0	-373	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAACTTCGGCCAGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	69886701	69890218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889327_69889959_69890063
ENSMUST00000101534.5	chr6	-	1614	5	FSM	ENSMUSG00000029838.12	ENSMUST00000101534.5	1614	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGCTTTGTGTACAATGA	NA	NA	NA	NA	NA	NA	NA	NA	36787155	36691863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_36692698_36718212_36718375_36720261_36720436_36721323_36721441_36786828
ENSMUST00000101553.9	chrX	+	1659	11	FSM	ENSMUSG00000035967.16	ENSMUST00000101553.9	3201	11	5	1537	0	-1537	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAGATTGTGGACTTAG	NA	NA	NA	NA	NA	NA	NA	NA	55500244	55539543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_55500677_55500808_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55539492
ENSMUST00000101585.10	chr11	-	1650	20	FSM	ENSMUSG00000057897.15	ENSMUST00000101585.10	1650	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCCTCCCCTGGTGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	6015538	5921734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5929672_5929722_5931069_5931115_5932720_5932759_5937056_5937132_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
ENSMUST00000101586.3	chr11	-	1590	19	FSM	ENSMUSG00000057897.15	ENSMUST00000101586.3	1590	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTCCCTGCGGTGTGCG	NA	NA	NA	NA	NA	NA	NA	NA	6015570	5922216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_5922451_5922631_5922727_5922812_5922889_5929672_5929722_5931069_5931115_5932500_5932573_5932720_5932762_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
ENSMUST00000101610.10	chr11	+	1642	9	FSM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	550	141	37	-141	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGCACAGGCACTGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	5049475	5055950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUST00000101613.3	chr11	+	3735	21	FSM	ENSMUSG00000009090.18	ENSMUST00000101613.3	3735	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCCTGGCCAGTGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	4959529	4992729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_4959593_4962881_4962988_4965605_4965742_4966605_4966852_4968096_4968207_4969280_4969503_4973096_4973218_4974371_4974468_4975593_4975710_4976244_4976411_4980961_4981061_4981629_4981890_4982417_4982620_4983241_4983263_4983686_4983843_4987631_4987778_4989124_4989255_4989518_4989604_4990093_4990181_4990266_4990422_4991717
ENSMUST00000101632.4	chr11	-	2697	11	FSM	ENSMUSG00000020435.18	ENSMUST00000101632.4	2697	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGATTGAGAAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	3672216	3653917	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3655208_3655388_3655616_3661693_3661870_3661957_3662054_3662125_3662230_3662458_3662580_3664470_3664717_3665087_3665235_3665496_3665552_3667096_3667215_3672099
ENSMUST00000101663.10	chr6	+	3431	5	FSM	ENSMUSG00000041390.19	ENSMUST00000101663.10	3431	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTGCTTTAAGATCTT	NA	NA	NA	NA	NA	NA	NA	NA	15720659	15802164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_15720963_15721185_15721364_15740986_15741110_15770212_15770492_15799616
ENSMUST00000101801.8	chr7	+	813	6	FSM	ENSMUSG00000075701.11	ENSMUST00000101801.8	1191	6	28	350	-1	-132	multi-exon	FALSE	canonical	NA	NA	NA	NA	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGGCTGCTGGCTAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	65729424	65738803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_65729538_65730079_65730215_65733147_65733255_65736694_65736785_65736940_65737020_65738514
ENSMUST00000102174.3	chr14	-	109	1	FSM	ENSMUSG00000076128.3	ENSMUST00000102174.3	109	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGGTTGTTGGCTCGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	54854242	54854133	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_54854100_54854200
ENSMUST00000102281.3	chr13	+	96	1	FSM	ENSMUSG00000076236.3	ENSMUST00000102281.3	96	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAGAAGACTGAAGGAACT	NA	NA	NA	NA	NA	NA	NA	NA	75793164	75793260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_75793200_75793300
ENSMUST00000102476.5	chr2	+	860	4	FSM	ENSMUSG00000060802.9	ENSMUST00000102476.5	860	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATTG	NA	NA	NA	NA	NA	NA	NA	NA	121978166	121983564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_121978286_121981353_121981633_121982127_121982157_121983131
ENSMUST00000102496.8	chr2	-	1848	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102496.8	1848	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	NA	NA	NA	NA	NA	NA	NA	120439796	120434718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439669
ENSMUST00000102497.10	chr2	-	1962	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102497.10	1962	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	NA	NA	NA	NA	NA	NA	NA	120439836	120434718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439595
ENSMUST00000102498.8	chr2	-	1901	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102498.8	1901	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	NA	NA	NA	NA	NA	NA	NA	120439991	120434718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439496_120439802
ENSMUST00000102499.8	chr2	-	1961	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102499.8	1961	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	NA	NA	NA	NA	NA	NA	NA	120440001	120434718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439761
ENSMUST00000102500.5	chr11	-	1541	2	FSM	ENSMUSG00000049396.7	ENSMUST00000102500.5	3540	2	0	1999	0	-1999	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCTGCTAGAAACAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	76108490	76103395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_76104750_76108303
ENSMUST00000102507.10	chr4	+	1445	10	FSM	ENSMUSG00000028745.19	ENSMUST00000102507.10	1702	10	15	242	15	76	multi-exon	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGGGACAGCAGTGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	138920249	139018827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139016171_139016285_139018313
ENSMUST00000102508.10	chr4	+	1674	9	FSM	ENSMUSG00000028745.19	ENSMUST00000102508.10	1674	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGCGCTGGCTGTACGTTC	NA	NA	NA	NA	NA	NA	NA	NA	138920209	139019129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
ENSMUST00000102517.4	chr2	+	3000	11	FSM	ENSMUSG00000027314.7	ENSMUST00000102517.4	3747	11	0	747	0	-444	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAGGTGGAGTGCCACCT	NA	NA	NA	NA	NA	NA	NA	NA	119156264	119165696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_119156688_119156795_119157069_119157543_119157602_119158409_119158674_119159012_119159074_119159162_119159294_119161096_119161267_119161442_119161663_119162623_119163327_119164528_119164638_119165108
ENSMUST00000102528.11	chr5	+	2384	7	FSM	ENSMUSG00000004455.17	ENSMUST00000102528.11	2384	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTGTCTTTCTGTCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	122296340	122313336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_122296679_122306237_122306370_122306981_122307213_122309884_122309990_122310794_122311019_122311208_122311344_122312117
ENSMUST00000102529.10	chr9	-	2875	18	FSM	ENSMUSG00000057969.16	ENSMUST00000102529.10	2875	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTGGAATGGCCCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	107482601	107475553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482470
ENSMUST00000102531.7	chr9	-	2958	19	FSM	ENSMUSG00000057969.16	ENSMUST00000102531.7	2958	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTGGAATGGCCCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	107486392	107475553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482645_107482787_107486319
ENSMUST00000102533.11	chr4	+	1251	11	FSM	ENSMUSG00000001604.15	ENSMUST00000102533.11	1251	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGCTGAGCCCTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	135975262	136002209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_135975429_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992240_135995319_135995475_135998543_135998691_136000954_136001027_136002090
ENSMUST00000102536.11	chr4	-	833	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGGTTTGGATTTGGTTG	NA	NA	NA	NA	NA	NA	NA	NA	135780704	135777041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
ENSMUST00000102544.9	chr4	+	1498	6	FSM	ENSMUSG00000028676.18	ENSMUST00000102544.9	2225	6	0	727	0	-727	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTGTTTGTTTTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	135583057	135594966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_135583603_135585615_135585721_135589084_135589189_135590350_135590514_135590836_135590888_135594436
ENSMUST00000102552.8	chr4	-	676	7	FSM	ENSMUSG00000003038.16	ENSMUST00000102552.8	676	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGAACACTTCATTACT	NA	NA	NA	NA	NA	NA	NA	NA	133695961	133692723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695105_133695221_133695783
ENSMUST00000102555.11	chr2	-	1197	5	FSM	ENSMUSG00000027166.15	ENSMUST00000102555.11	1197	5	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGAGTATTCTTTATAG	NA	NA	NA	NA	NA	NA	NA	NA	105833894	105797053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_105797440_105800792_105800862_105811326_105811466_105832273_105832421_105833438
ENSMUST00000102561.11	chr4	+	1513	9	FSM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	41	259	41	-259	multi-exon	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTGGTTTTATTTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	132495686	132505804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503667_132503963_132504059_132505100
ENSMUST00000102563.2	chr11	+	1352	16	FSM	ENSMUSG00000060216.16	ENSMUST00000102563.2	1352	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGAAACTTGGCTTGGTC	NA	NA	NA	NA	NA	NA	NA	NA	70323523	70331649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989_70331102_70331581
ENSMUST00000102564.11	chr11	+	1848	15	FSM	ENSMUSG00000060216.16	ENSMUST00000102564.11	1848	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGCTATGCCAGTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	70323478	70331620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989
ENSMUST00000102575.9	chr11	+	5037	16	FSM	ENSMUSG00000020888.17	ENSMUST00000190940.2	5037	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATGTTACCCCACTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	69891442	69903127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278_69898347_69898640_69898770_69898845_69898978_69899106_69899287_69899602_69899822_69899969_69901604_69901702
ENSMUST00000102584.11	chr5	+	1118	6	FSM	ENSMUSG00000029591.15	ENSMUST00000102584.11	2136	6	0	1018	0	-1015	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACATTTTTCTAAAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	114268986	114276364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
ENSMUST00000102593.11	chr4	-	1123	11	FSM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTGCAGCCTGTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	129494441	129485752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
ENSMUST00000102597.5	chr4	-	2038	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	592	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGGTTGGTTTAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	129436506	129409896	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
ENSMUST00000102601.10	chr11	+	759	4	FSM	ENSMUSG00000049299.15	ENSMUST00000102601.10	759	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	69214888	69216619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69215083_69215220_69215292_69215649_69215789_69216264
ENSMUST00000102601.10-0	chr11	+	665	4	FSM	ENSMUSG00000049299.15	ENSMUST00000102601.10	759	4	94	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	69214982	69216619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69215083_69215220_69215292_69215649_69215789_69216264
ENSMUST00000102602.8	chr11	+	751	5	FSM	ENSMUSG00000049299.15	ENSMUST00000102602.8	751	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	69214805	69216619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69214893_69214983_69215083_69215220_69215292_69215649_69215789_69216264
ENSMUST00000102604.11	chr4	+	1781	7	FSM	ENSMUSG00000028792.15	ENSMUST00000102604.11	1781	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1087	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	128887016	128905322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826_128902023_128904355
ENSMUST00000102628.11	chr4	+	870	5	FSM	ENSMUSG00000028889.18	ENSMUST00000102628.11	1634	5	0	764	0	-764	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGAAAACACTACATCGAT	NA	NA	NA	NA	NA	NA	NA	NA	124744471	124748271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_124744960_124745485_124745601_124745692_124745813_124747666_124747810_124748267
ENSMUST00000102642.9	chr2	+	1560	4	FSM	ENSMUSG00000027078.15	ENSMUST00000102642.9	1560	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	865	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCAGAAGTCGGACTTCA	NA	NA	NA	NA	NA	NA	NA	NA	84629171	84640520	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_84629277_84633122_84633219_84636680_84636868_84639348
ENSMUST00000102645.4	chr2	+	1677	5	FSM	ENSMUSG00000027080.7	ENSMUST00000102645.4	2059	5	0	382	0	-382	multi-exon	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTATGAACACTAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	84508745	84518177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_84509006_84515534_84515792_84515946_84516044_84516534_84516630_84517209
ENSMUST00000102647.11	chr2	-	654	4	FSM	ENSMUSG00000076437.12	ENSMUST00000102647.11	654	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAGCAAGTTTAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	84501052	84499564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_84499742_84500355_84500461_84500588_84500735_84500826
ENSMUST00000102650.10	chr11	-	3874	15	FSM	ENSMUSG00000047804.16	ENSMUST00000102650.10	3874	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCTTTGTGCATTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	61821078	61762132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_61763848_61768132_61768229_61768799_61768853_61777525_61777609_61781063_61781174_61784205_61784380_61787473_61787619_61791135_61791273_61794732_61794857_61795600_61795686_61800673_61800773_61805849_61806408_61806909_61807093_61813607_61813656_61820814
ENSMUST00000102693.9	chr11	-	961	7	FSM	ENSMUSG00000000301.17	ENSMUST00000102693.9	961	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTGGTCTCCTTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	59937307	59861439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59922538_59922647_59937165
ENSMUST00000102696.5	chr4	-	860	6	FSM	ENSMUSG00000047675.16	ENSMUST00000102696.5	860	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4794	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTTTGGAGAGGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	117013440	117011023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_117011185_117011495_117011626_117011834_117012011_117012204_117012305_117012767_117012875_117013254
ENSMUST00000102727.3	chr11	-	2471	25	FSM	ENSMUSG00000018340.14	ENSMUST00000102727.3	2471	25	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	54924271	54869933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
ENSMUST00000102745.10	chr12	+	2207	12	FSM	ENSMUSG00000021281.16	ENSMUST00000102745.10	3762	12	0	1555	0	-1215	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGCAGTGAAGTCAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	111408902	111419897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_111409118_111411362_111411718_111411940_111412572_111414416_111414532_111414680_111414804_111414972_111415074_111415664_111415764_111416199_111416324_111417116_111417240_111417476_111417633_111417784_111417907_111419854
ENSMUST00000102763.5	chr11	+	594	3	FSM	ENSMUSG00000020392.9	ENSMUST00000102763.5	1832	3	231	1007	231	-1007	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCTGTACACTTGTACC	NA	NA	NA	NA	NA	NA	NA	NA	51858718	51867154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_51858785_51860970_51861071_51866726
ENSMUST00000102763.5-1	chr11	+	586	3	FSM	ENSMUSG00000020392.9	ENSMUST00000102763.5	1832	3	0	1246	0	-1246	multi-exon	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAAATGCATATTTATGT	NA	NA	NA	NA	NA	NA	NA	NA	51858487	51866915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_51858785_51860970_51861071_51866726
ENSMUST00000102769.11	chr2	-	1342	8	FSM	ENSMUSG00000026766.17	ENSMUST00000102769.11	1342	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	NA	NA	NA	NA	NA	NA	NA	50186729	50169892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186654
ENSMUST00000102782.4	chr1	+	445	1	FSM	ENSMUSG00000078193.3	ENSMUST00000102782.4	445	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	156193609	156194054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_156193600_156194100
ENSMUST00000102795.4	chr11	-	2088	11	FSM	ENSMUSG00000041231.16	ENSMUST00000102795.4	2088	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	288	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTTATCTGTTTTATAAT	NA	NA	NA	NA	NA	NA	NA	NA	44361325	44345397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356308_44356384_44356471_44356822_44356915_44357641_44357839_44361254
ENSMUST00000102799.10	chr4	-	3840	8	FSM	ENSMUSG00000008489.19	ENSMUST00000102799.10	3840	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGTATCTTTAAATACAT	NA	NA	NA	NA	NA	NA	NA	NA	91288221	91138999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_91141805_91142377_91142417_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91287674_91287774_91288052
ENSMUST00000102805.4	chr16	+	1750	6	FSM	ENSMUSG00000090176.2	ENSMUST00000102805.4	1750	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGTCATGTGATATGA	NA	NA	NA	NA	NA	NA	NA	NA	44687459	44736203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_44687505_44698155_44698388_44729410_44729726_44729836_44730086_44734918_44735034_44735409
ENSMUST00000102817.5	chr16	-	1420	3	FSM	ENSMUSG00000047261.10	ENSMUST00000102817.5	1420	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGTGTCTCTGTGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	42161014	42068804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_42069478_42112161_42112730_42160835
ENSMUST00000102840.5	chr2	+	1696	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	625	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTCTGCGTGTGTGCC	NA	NA	NA	NA	NA	NA	NA	NA	31360218	31410684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
ENSMUST00000102844.4	chr11	-	637	5	FSM	ENSMUSG00000020460.16	ENSMUST00000102844.4	637	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	NA	NA	NA	NA	NA	NA	NA	29497860	29495845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680
ENSMUST00000102845.11	chr11	-	531	6	FSM	ENSMUSG00000020460.16	ENSMUST00000102845.11	791	6	128	132	-121	-132	multi-exon	FALSE	canonical	NA	NA	NA	NA	1261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGTGCTGGAGTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	29497981	29495977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680_29497746_29497840
ENSMUST00000102866.10	chr2	+	1365	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	0	1459	0	518	multi-exon	FALSE	canonical	NA	NA	NA	NA	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATACAACAGGAAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	29951864	29961130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
ENSMUST00000102879.4	chr2	+	1072	4	FSM	ENSMUSG00000026833.19	ENSMUST00000102879.4	1072	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTGTGGTGTTCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	28095670	28104437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_28096112_28098089_28098240_28102543_28102700_28104112
ENSMUST00000102880.5	chr11	+	2859	6	FSM	ENSMUSG00000033953.11	ENSMUST00000102880.5	2859	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGAATGTATTGTGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	17109262	17150375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_17109543_17132106_17132147_17142956_17143134_17144216_17144277_17144668_17144854_17148258
ENSMUST00000102898.5	chr2	+	914	8	FSM	ENSMUSG00000062647.17	ENSMUST00000102898.5	914	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	26800775	26803330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
ENSMUST00000102926.5	chr4	+	1716	7	FSM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3095	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGTTGTACTCTCACAT	NA	NA	NA	NA	NA	NA	NA	NA	46450901	46472657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_46451350_46460089_46460240_46463806_46463930_46468558_46468788_46469882_46470008_46471397_46471468_46472086
ENSMUST00000102928.5	chr11	+	2295	13	FSM	ENSMUSG00000020476.15	ENSMUST00000102928.5	2295	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATATAACTGATGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	5738529	5750962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747283_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
ENSMUST00000102930.10	chr11	-	2174	18	FSM	ENSMUSG00000009079.17	ENSMUST00000102930.10	2174	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTGAGTTTTTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	5049042	5019896	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041459_5041478_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUST00000102944.11	chr4	+	1884	9	FSM	ENSMUSG00000028466.16	ENSMUST00000102944.11	1884	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	839	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCCTTTTTACTGGCACA	NA	NA	NA	NA	NA	NA	NA	NA	43562331	43567060	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_43562960_43563049_43563207_43563280_43563352_43563468_43563559_43565260_43565368_43565466_43565536_43566119_43566205_43566293_43566379_43566468
ENSMUST00000102950.10	chr11	-	3077	12	FSM	ENSMUSG00000020435.18	ENSMUST00000102950.10	3077	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTTGCAGAGTCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	3672216	3653730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3655208_3655388_3655616_3661693_3661870_3661957_3662054_3662125_3662230_3662458_3662580_3664470_3664717_3665087_3665235_3665496_3665552_3667096_3667215_3667793_3667987_3672099
ENSMUST00000102976.4	chr2	-	3215	6	FSM	ENSMUSG00000015619.11	ENSMUST00000102976.4	3215	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGTAACATTGTATCAAC	NA	NA	NA	NA	NA	NA	NA	NA	9883411	9861888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_9863466_9867905_9868032_9873571_9873718_9879199_9879737_9882162_9882796_9883215
ENSMUST00000102982.2	chr13	+	469	1	FSM	ENSMUSG00000069308.8	ENSMUST00000102982.2	469	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCTACCTTACTCGGAC	NA	NA	NA	NA	NA	NA	NA	NA	21971677	21972146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_21971700_21972100
ENSMUST00000103002.8	chr12	-	2110	5	FSM	ENSMUSG00000076432.14	ENSMUST00000103002.8	2110	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTATGGCTTTGTAACA	NA	NA	NA	NA	NA	NA	NA	NA	21467437	21440329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798
ENSMUST00000103008.12	chr4	+	1697	9	FSM	ENSMUSG00000028249.16	ENSMUST00000103008.12	2086	9	31	358	-5	-358	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCAAGATTTTCTAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	6365707	6395297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385028_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
ENSMUST00000103038.8	chr11	-	1143	7	FSM	ENSMUSG00000015542.18	ENSMUST00000103038.8	1143	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	NA	NA	NA	NA	NA	NA	NA	115078158	115073657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077661_115077944
ENSMUST00000103039.2	chr11	-	1158	7	NNC	ENSMUSG00000015542.18	novel	1204	7	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	NA	NA	NA	NA	NA	NA	NA	115078181	115073657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077664_115077955
ENSMUST00000103041.8	chr11	-	953	7	FSM	ENSMUSG00000015542.18	ENSMUST00000103041.8	953	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	NA	NA	NA	NA	NA	NA	NA	115078670	115073657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077661_115078646
ENSMUST00000103060.10	chr11	-	2050	13	FSM	ENSMUSG00000041895.16	ENSMUST00000103060.10	2050	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGAGTTGTTTACATTT	NA	NA	NA	NA	NA	NA	NA	NA	109502258	109464156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_109464794_109467882_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
ENSMUST00000103068.10	chr11	+	2597	19	FSM	ENSMUSG00000018372.14	ENSMUST00000103068.10	2597	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCTTTTGAATTTATAAC	NA	NA	NA	NA	NA	NA	NA	NA	106680077	106709686	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_106680204_106681556_106681686_106683302_106683411_106686948_106687060_106690869_106690970_106692288_106692405_106697061_106697256_106700017_106700128_106700453_106700584_106702021_106702176_106703221_106703362_106704586_106704689_106705429_106705563_106706293_106706464_106706559_106706635_106707478_106707632_106708659_106708807_106709021_106709094_106709359
ENSMUST00000103072.10	chr11	-	1517	11	FSM	ENSMUSG00000069631.15	ENSMUST00000103072.10	1517	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATCACCAGGGACTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	106084388	106054673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106077950_106078007_106084291
ENSMUST00000103094.11	chr2	-	1152	6	FSM	ENSMUSG00000017307.17	ENSMUST00000103094.11	1152	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGACCTTTAATAGAA	NA	NA	NA	NA	NA	NA	NA	NA	164646802	164634687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
ENSMUST00000103101.11	chr2	+	2044	12	FSM	ENSMUSG00000017721.16	ENSMUST00000103101.11	2562	12	41	477	11	299	multi-exon	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATGGTGTGCCCCCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	164339480	164349744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194
ENSMUST00000103110.10	chr11	+	2716	21	FSM	ENSMUSG00000019302.17	ENSMUST00000103110.10	2716	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGAGCAGCTCCCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	100900277	100953250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917485_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100945851_100945970_100946259_100946432_100953137
ENSMUST00000103120.5	chr11	+	1005	4	FSM	ENSMUSG00000006782.17	ENSMUST00000103120.5	2357	4	0	1352	0	-1352	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTCCATCTCTGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	100465729	100471202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_100465895_100467061_100467732_100469738_100469879_100471172
ENSMUST00000103123.10	chr2	+	1540	7	FSM	ENSMUSG00000027651.17	ENSMUST00000103123.10	4504	7	11	2953	11	-2953	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGATGGACTCAGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	157870427	157917174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889838_157889949_157892006_157892134_157900571_157900748_157916849
ENSMUST00000103129.9	chr2	-	2080	11	FSM	ENSMUSG00000027635.16	ENSMUST00000103129.9	2080	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACTATGTGACAGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	156848995	156837184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848894
ENSMUST00000103147.5	chr11	+	766	6	FSM	ENSMUSG00000069744.8	ENSMUST00000103147.5	766	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	370	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGCCTGCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	97594224	97604326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_97594317_97594613_97594799_97597623_97597732_97601927_97602106_97603262_97603358_97604218
ENSMUST00000103175.8	chr4	+	620	7	FSM	ENSMUSG00000023286.17	ENSMUST00000103175.8	1309	7	79	610	41	-266	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCACAAGATGAACTAAGTAA	NA	NA	NA	NA	NA	NA	NA	NA	156028366	156041558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_156028471_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ENSMUST00000103180.4	chr4	+	1688	6	FSM	ENSMUSG00000029047.14	ENSMUST00000103180.4	1688	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGAGCCGGGCGTGGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	155151472	155156890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_155151632_155152279_155152361_155153119_155153527_155154843_155155020_155155097_155155234_155156161
ENSMUST00000103191.11	chr4	+	474	4	FSM	ENSMUSG00000028936.16	ENSMUST00000103191.11	474	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGTGGTTTATCCTTGCAT	NA	NA	NA	NA	NA	NA	NA	NA	152410309	152416937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
ENSMUST00000103197.5	chr4	+	2271	12	FSM	ENSMUSG00000028948.17	ENSMUST00000103197.5	2271	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGGTTCCTAGCCGTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	152123792	152145951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_152124265_152125503_152125724_152125973_152126102_152130151_152130288_152130404_152130493_152131003_152131102_152134991_152135154_152136214_152136516_152137054_152137167_152140504_152140683_152142247_152142382_152145709
ENSMUST00000103198.11	chr2	+	1877	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTATTTTGTTTATTG	NA	NA	NA	NA	NA	NA	NA	NA	130116349	130121233	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
ENSMUST00000103199.9	chr2	-	1161	7	FSM	ENSMUSG00000027404.17	ENSMUST00000103199.9	1161	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCATTTGTCTTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	130021323	130013554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934_130019087_130021153
ENSMUST00000103208.2	chr4	-	3620	6	FSM	ENSMUSG00000044700.16	ENSMUST00000103208.2	3620	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGCGTCTTTTTTTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	149822501	149809320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_149811888_149812358_149812709_149813992_149814170_149815519_149815715_149816292_149816414_149822291
ENSMUST00000103216.10	chr4	+	1090	5	FSM	ENSMUSG00000028974.14	ENSMUST00000103216.10	1835	5	0	745	0	-745	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATCCTGGAACTTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	149188602	149202582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228
ENSMUST00000103226.10	chr2	-	1338	8	FSM	ENSMUSG00000027361.16	ENSMUST00000103226.10	1338	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATTGAATGAGTGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	126517406	126480940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
ENSMUST00000103242.5	chr11	-	1375	3	FSM	ENSMUSG00000037278.10	ENSMUST00000103242.5	1375	3	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	672	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTGTTGTGTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	78441603	78432642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_78433623_78434311_78434457_78441353
ENSMUST00000103655.3	chr14	+	411	2	FSM	ENSMUSG00000093966.3	ENSMUST00000103655.3	411	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGCTCCCAGCAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	53836284	53836867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_53836417_53836588
ENSMUST00000103740.2	chr14	+	413	3	FSM	ENSMUSG00000076928.6	ENSMUST00000103740.2	413	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAAGAAGGCATGAAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	54457977	54460554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_54458239_54459562_54459608_54460447
ENSMUST00000104034.3	chr5	+	132	1	FSM	ENSMUSG00000077222.3	ENSMUST00000104034.3	132	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	108053042	108053174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_108053000_108053200
ENSMUST00000104916.4	chr19	+	571	1	FSM	ENSMUSG00000044424.5	ENSMUST00000104916.4	571	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	423	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAATGACTGAATAAAG	NA	NA	NA	NA	NA	NA	NA	NA	23597112	23597683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_23597100_23597700
ENSMUST00000104925.5	chr14	+	468	1	FSM	ENSMUSG00000078126.5	ENSMUST00000104925.5	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	NA	NA	NA	NA	NA	NA	NA	NA	33892611	33893079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_33892600_33893100
ENSMUST00000104933.2	chr11	-	1311	1	FSM	ENSMUSG00000078134.2	ENSMUST00000104933.2	1311	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAGAAAAAAGAAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	98516487	98515176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_98515200_98516500
ENSMUST00000104958.2	chr11	-	837	1	FSM	ENSMUSG00000078153.4	ENSMUST00000104958.2	837	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	331	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAGAAATAC	NA	NA	NA	NA	NA	NA	NA	NA	48837017	48836180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_48836200_48837000
ENSMUST00000104990.4	chr7	-	617	1	FSM	ENSMUSG00000078192.6	ENSMUST00000104990.4	617	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	351	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGTGTTGGAGAGTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	142311589	142310972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_142311000_142311600
ENSMUST00000105085.3	chr15	+	418	1	FSM	ENSMUSG00000078289.3	ENSMUST00000105085.3	418	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	NA	NA	NA	NA	NA	NA	NA	NA	85001070	85001488	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_85001100_85001500
ENSMUST00000105111.4	chrX	+	2505	1	FSM	ENSMUSG00000078317.7	ENSMUST00000105111.4	2505	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	313	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGATTCTTATTGCTAATA	NA	NA	NA	NA	NA	NA	NA	NA	72271896	72274401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_72271900_72274400
ENSMUST00000105140.3	chr4	+	1848	1	FSM	ENSMUSG00000078349.4	ENSMUST00000105140.3	1848	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCCTGAAAGGTGATCTG	NA	NA	NA	NA	NA	NA	NA	NA	156287760	156289608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_156287800_156289600
ENSMUST00000105169.6	chr12	+	614	1	FSM	ENSMUSG00000078377.6	ENSMUST00000105169.6	614	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	660	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACGTGATATTTGTAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	12073045	12073659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_12073000_12073700
ENSMUST00000105177.3	chr7	-	1251	1	FSM	ENSMUSG00000003123.16	ENSMUST00000105177.3	1251	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCAGTCTGTCGAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	25098134	25096883	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_25096900_25098100
ENSMUST00000105229.9	chr10	+	1043	8	FSM	ENSMUSG00000025351.15	ENSMUST00000105229.9	1043	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	NA	NA	NA	NA	NA	NA	NA	NA	128744688	128748691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_128744922_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
ENSMUST00000105230.4	chr10	+	918	11	FSM	ENSMUSG00000078427.4	ENSMUST00000105230.4	918	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGAAAATGTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	128657762	128713486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ENSMUST00000105265.8	chr10	-	2268	14	FSM	ENSMUSG00000020166.16	ENSMUST00000105265.8	2268	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGAATGTGTATATATTATA	NA	NA	NA	NA	NA	NA	NA	NA	116417406	116321413	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116384937_116385081_116417357
ENSMUST00000105306.3	chr10	+	1903	15	FSM	ENSMUSG00000020042.16	ENSMUST00000105306.3	3945	15	10	2032	10	-89	multi-exon	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGATGTGCTTCAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	85434274	85494124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_85434442_85434588_85434742_85460766_85460933_85463060_85463151_85465075_85465178_85466951_85467046_85467156_85467293_85467952_85468174_85469547_85469727_85476366_85476473_85481351_85481455_85483575_85483658_85487470_85487540_85490341_85490456_85494003
ENSMUST00000105323.8	chr10	-	1463	10	FSM	ENSMUSG00000020232.18	ENSMUST00000105323.8	1463	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTAATATTTGTGGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	81186314	81181881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967_81186024_81186240
ENSMUST00000105324.9	chr10	-	1540	10	FSM	ENSMUSG00000020232.18	ENSMUST00000105324.9	1540	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	81186260	81181884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967_81186024_81186106
ENSMUST00000105331.8	chr10	+	1556	11	FSM	ENSMUSG00000035027.19	ENSMUST00000105331.8	1556	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCGGCTGTGCTCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	80941780	80959717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80942073_80944581_80944793_80950859_80951007_80953985_80954064_80954942_80954995_80955090_80955216_80955323_80955538_80956879_80956945_80957736_80957799_80958400_80958447_80959453
ENSMUST00000105349.8	chr10	-	1566	7	FSM	ENSMUSG00000035478.15	ENSMUST00000105349.8	1566	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	80235384	80228372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
ENSMUST00000105355.8	chr10	+	2127	5	FSM	ENSMUSG00000035504.17	ENSMUST00000105357.2	2127	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGTGTGTCCGCTAAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	80165786	80172275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799_80169969_80170943
ENSMUST00000105357.2	chr10	+	2127	5	FSM	ENSMUSG00000035504.17	ENSMUST00000105357.2	2127	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGTGTGTCCGCTAAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	80165786	80172275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799_80169969_80170943
ENSMUST00000105362.8	chr10	+	2081	12	FSM	ENSMUSG00000069565.13	ENSMUST00000105362.8	2081	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGTGCTGTCTGCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	80100817	80124242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123372
ENSMUST00000105363.8	chr10	-	988	6	FSM	ENSMUSG00000020150.14	ENSMUST00000105363.8	988	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	391	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTTGGTTGGCAGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	80096846	80093984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_80094292_80094773_80094885_80095010_80095079_80095434_80095499_80095601_80095748_80096554
ENSMUST00000105365.9	chr10	+	718	7	FSM	ENSMUSG00000045193.14	ENSMUST00000105365.9	1321	7	85	518	31	371	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGCCTCGTGACTAGAC	NA	NA	NA	NA	NA	NA	NA	NA	80003696	80006971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80006815
ENSMUST00000105365.9-1	chr10	+	719	7	FSM	ENSMUSG00000045193.14	ENSMUST00000105365.9	1321	7	0	602	0	287	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTGATCGTTGTGTAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	80003611	80006887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80006815
ENSMUST00000105366.2	chr10	+	439	3	FSM	ENSMUSG00000003072.16	ENSMUST00000105366.2	781	3	0	342	0	-342	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGACGAGGCAGCACGGGC	NA	NA	NA	NA	NA	NA	NA	NA	79978203	79981304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_79978441_79979665_79979820_79981256
ENSMUST00000105379.3	chr10	+	2519	8	FSM	ENSMUSG00000035863.15	ENSMUST00000105379.3	2519	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	79629405	79656730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_79629575_79642473_79642526_79642867_79642949_79643411_79643543_79645303_79645455_79648176_79648199_79651018_79651076_79654874
ENSMUST00000105381.5	chr10	+	1240	6	FSM	ENSMUSG00000023175.16	ENSMUST00000105381.5	1240	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	79545431	79547803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
ENSMUST00000105397.10	chr10	+	1470	7	FSM	ENSMUSG00000020284.17	ENSMUST00000105397.10	1818	7	169	179	20	-179	multi-exon	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTAGAAGGGCCCTTAGAG	NA	NA	NA	NA	NA	NA	NA	NA	77814526	77821089	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_77814616_77815586_77815606_77816334_77816382_77817417_77817648_77818703_77818876_77819349_77819426_77820252
ENSMUST00000105397.10-1	chr10	+	1431	7	FSM	ENSMUSG00000020284.17	ENSMUST00000105397.10	1818	7	0	387	0	-387	multi-exon	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACCTGAGTGACTGTTGC	NA	NA	NA	NA	NA	NA	NA	NA	77814357	77820881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_77814616_77815586_77815606_77816334_77816382_77817417_77817648_77818703_77818876_77819349_77819426_77820252
ENSMUST00000105408.4	chr10	-	708	2	FSM	ENSMUSG00000078444.4	ENSMUST00000105408.4	708	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAAGTTCAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	77095057	77093609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_77093821_77094560
ENSMUST00000105410.10	chr10	+	1448	6	FSM	ENSMUSG00000001436.16	ENSMUST00000105410.10	2347	6	56	843	0	-843	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGGCGGGGCTGGATGGC	NA	NA	NA	NA	NA	NA	NA	NA	76869101	76885422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_76869182_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
ENSMUST00000105447.11	chr10	-	2597	9	FSM	ENSMUSG00000020078.17	ENSMUST00000105447.11	2597	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTTAAGTTTGTAGTT	NA	NA	NA	NA	NA	NA	NA	NA	62322584	62291055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
ENSMUST00000105455.9	chr10	+	1512	10	FSM	ENSMUSG00000020085.16	ENSMUST00000105455.9	1512	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGCTGGAGCTTTTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	61551041	61574432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574177
ENSMUST00000105499.2	chr10	+	677	3	FSM	ENSMUSG00000019804.13	ENSMUST00000105499.2	1057	3	0	380	0	214	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCACAGCCCCGTAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	42378285	42410997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_42378489_42409144_42409270_42410648
ENSMUST00000105505.10	chr10	-	2071	9	FSM	ENSMUSG00000019813.17	ENSMUST00000105505.10	2071	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTGGAAATATTCTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	41621927	41594835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766
ENSMUST00000105507.5	chr10	+	1068	8	FSM	ENSMUSG00000078451.6	ENSMUST00000105507.5	1068	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTTGATTTGAAGGCAA	NA	NA	NA	NA	NA	NA	NA	NA	41366434	41390282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_41366618_41370514_41370611_41374357_41374547_41377620_41377684_41377779_41377928_41378991_41379049_41383419_41383556_41390086
ENSMUST00000105512.8	chr10	-	2727	12	FSM	ENSMUSG00000039480.15	ENSMUST00000105512.8	2727	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTGTATTATTGAATA	NA	NA	NA	NA	NA	NA	NA	NA	34294535	34179604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34274109_34274192_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
ENSMUST00000105534.10	chr10	-	617	5	FSM	ENSMUSG00000019806.14	ENSMUST00000105534.10	617	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCCAAGTCTGAGAGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	13744566	13523412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_13523451_13566267_13566384_13677591_13677694_13704986_13705143_13744361
ENSMUST00000105539.2	chr10	-	1961	12	FSM	ENSMUSG00000019809.17	ENSMUST00000105539.2	1961	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATATAGCTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	13428864	13399885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428692
ENSMUST00000105583.9	chr4	+	1165	8	FSM	ENSMUSG00000023286.17	ENSMUST00000105583.9	1434	8	41	228	41	-83	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACCTTAAAGAGAAAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	156028366	156041940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_156028471_156030711_156030875_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ENSMUST00000105591.2	chr4	+	773	4	FSM	ENSMUSG00000065990.13	ENSMUST00000105591.2	773	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCACTATAATAAATATTGG	NA	NA	NA	NA	NA	NA	NA	NA	155916125	155917488	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_155916224_155916439_155916528_155916808_155917255_155917347
ENSMUST00000105592.8	chr4	+	1029	3	FSM	ENSMUSG00000065990.13	ENSMUST00000105592.8	1029	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTAGGCCGACCTAGA	NA	NA	NA	NA	NA	NA	NA	NA	155916115	155917518	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_155916528_155916808_155917255_155917347
ENSMUST00000105673.8	chr4	-	919	7	FSM	ENSMUSG00000028964.15	ENSMUST00000105673.8	919	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGTAGTATGTGAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	150994108	150981695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150993847
ENSMUST00000105675.8	chr4	-	882	7	FSM	ENSMUSG00000028964.15	ENSMUST00000105675.8	882	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	150998894	150981589	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150998776
ENSMUST00000105676.8	chr4	-	582	7	FSM	ENSMUSG00000028964.15	ENSMUST00000105676.8	582	7	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGTATGTGAAGCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	150992870	150981692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_150981760_150981828_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774
ENSMUST00000105692.2	chr4	+	634	4	FSM	ENSMUSG00000028988.14	ENSMUST00000105692.2	634	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTTTATTTTTATTTC	NA	NA	NA	NA	NA	NA	NA	NA	149629573	149648965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_149629692_149630167_149630289_149630858_149630950_149648661
ENSMUST00000105706.8	chr4	-	1938	6	FSM	ENSMUSG00000055401.15	ENSMUST00000105706.8	1938	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTTCATCCTGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	148236365	148230172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148235544
ENSMUST00000105784.8	chr4	-	3036	9	FSM	ENSMUSG00000006219.13	ENSMUST00000105784.8	3036	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	141327235	141303372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
ENSMUST00000105852.8	chr4	-	1588	10	FSM	ENSMUSG00000028670.15	ENSMUST00000105852.8	1588	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCCTTATGTGGTACA	NA	NA	NA	NA	NA	NA	NA	NA	135699240	135695534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_135696379_135696454_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699169
ENSMUST00000105866.3	chr4	+	1275	3	FSM	ENSMUSG00000078521.3	ENSMUST00000105866.3	1275	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTGGTGTCGTGCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	134238309	134251238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_134238481_134248782_134248913_134250264
ENSMUST00000105867.8	chr4	+	802	5	FSM	ENSMUSG00000028832.12	ENSMUST00000105867.8	802	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGGCTAGTTCTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	134195719	134200975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_134195741_134197413_134197487_134197977_134198151_134200114_134200307_134200632
ENSMUST00000105868.2	chr4	+	967	4	FSM	ENSMUSG00000028832.12	ENSMUST00000105868.2	967	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCCGATGTAGGACCGT	NA	NA	NA	NA	NA	NA	NA	NA	134197052	134200810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_134197487_134197977_134198151_134200114_134200307_134200642
ENSMUST00000105887.8	chr4	-	2038	9	FSM	ENSMUSG00000012117.14	ENSMUST00000105887.8	2038	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACGAGGACTGAACAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	133728182	133697503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_133698568_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727705_133728035
ENSMUST00000105907.9	chr4	-	1484	6	FSM	ENSMUSG00000028857.17	ENSMUST00000105907.9	1484	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	665	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	133005103	132993355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132998273_132998359_133004841
ENSMUST00000105919.2	chr4	-	1090	7	FSM	ENSMUSG00000028882.14	ENSMUST00000105919.2	1090	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGGTGGAGGGATGACAA	NA	NA	NA	NA	NA	NA	NA	NA	132570434	132555137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_132555515_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570367
ENSMUST00000105950.11	chr7	+	1037	16	FSM	ENSMUSG00000061723.19	ENSMUST00000105950.11	1037	16	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTACTGTTTATGTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	142052579	142069740	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_142052637_142055356_142055392_142055565_142055580_142057784_142057803_142057986_142058002_142059252_142059268_142061486_142061526_142061581_142061601_142064400_142064447_142064993_142065111_142065201_142065280_142065772_142065887_142065992_142066103_142066268_142066360_142068062_142068104_142069512
ENSMUST00000105953.10	chr7	+	1049	16	FSM	ENSMUSG00000061723.19	ENSMUST00000105953.10	1049	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTTATGTGTTGTGTTA	NA	NA	NA	NA	NA	NA	NA	NA	142052572	142069745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_142052637_142055356_142055392_142055565_142055580_142057784_142057803_142057986_142058002_142059252_142059268_142061486_142061526_142062071_142062091_142064400_142064447_142064993_142065111_142065201_142065280_142065772_142065887_142065992_142066103_142066268_142066360_142068062_142068104_142069512
ENSMUST00000105954.10	chr7	+	1052	16	FSM	ENSMUSG00000061723.19	ENSMUST00000105954.10	1052	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTTATGTGTTGTGTTA	NA	NA	NA	NA	NA	NA	NA	NA	142052572	142069745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_142052637_142055356_142055392_142055565_142055580_142056476_142056495_142057784_142057803_142059252_142059268_142061486_142061526_142062071_142062091_142064400_142064447_142064993_142065111_142065201_142065280_142065772_142065887_142065992_142066103_142066268_142066360_142068062_142068104_142069512
ENSMUST00000105955.8	chr7	+	1028	16	FSM	ENSMUSG00000061723.19	ENSMUST00000105955.8	1028	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTTATGTGTTGTGTTA	NA	NA	NA	NA	NA	NA	NA	NA	142052572	142069745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_142052637_142055356_142055392_142055565_142055580_142056476_142056495_142057784_142057803_142057986_142058002_142059252_142059268_142062071_142062091_142064400_142064447_142064993_142065111_142065201_142065280_142065772_142065887_142065992_142066103_142066268_142066360_142068062_142068104_142069512
ENSMUST00000105957.10	chr7	+	1028	16	FSM	ENSMUSG00000061723.19	ENSMUST00000105957.10	1028	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTACTGTTTATGTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	142052579	142069740	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_142052637_142055356_142055392_142055565_142055580_142056476_142056495_142057784_142057803_142057986_142058002_142058427_142058436_142061506_142061545_142064400_142064447_142064993_142065111_142065201_142065280_142065772_142065887_142065992_142066103_142066268_142066360_142068062_142068104_142069512
ENSMUST00000105962.10	chr4	-	961	8	FSM	ENSMUSG00000028898.16	ENSMUST00000105962.10	961	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	132056800	132039073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132048989_132049122_132052518_132052572_132053256_132053357_132055779_132055878_132056663
ENSMUST00000105963.2	chr4	+	777	7	FSM	ENSMUSG00000028899.12	ENST00000495422.2	1256	7	18	461	18	-377	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACCTCAGCCATCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	132001726	132020023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_132001799_132009304_132009390_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
ENSMUST00000105963.2-0	chr4	+	1238	7	FSM	ENSMUSG00000028899.12	ENST00000495422.2	1256	7	18	0	18	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGGCAGTGATCCTGTTA	NA	NA	NA	NA	NA	NA	NA	NA	132001726	132020484	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_132001799_132009304_132009390_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
ENSMUST00000105964.2	chr4	-	1925	10	FSM	ENSMUSG00000028901.14	ENSMUST00000105964.2	1925	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAACAAA	NA	NA	NA	NA	NA	NA	NA	NA	131988913	131952981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131988801
ENSMUST00000105967.8	chr7	+	1395	11	FSM	ENSMUSG00000018819.11	ENSMUST00000105967.8	1395	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGGATCTCCTGTGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	142014600	142048340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_142014704_142038215_142038363_142040083_142040243_142042155_142042253_142042602_142042678_142042865_142042910_142043061_142043144_142043636_142043772_142044081_142044160_142044295_142044403_142047972
ENSMUST00000105968.8	chr7	+	1727	11	FSM	ENSMUSG00000018819.11	ENSMUST00000105968.8	1727	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTAGTCTGTTCCTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	142014545	142048604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_142014704_142038215_142038363_142040083_142040243_142042155_142042253_142042584_142042678_142042865_142042910_142043061_142043144_142043636_142043772_142044081_142044160_142044295_142044403_142047977
ENSMUST00000105971.8	chr7	+	732	8	FSM	ENSMUSG00000031097.16	ENSMUST00000105971.8	732	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTGGTCTAGTTCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	141995544	141998147	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_141995606_141996205_141996236_141996427_141996435_141996907_141996950_141997039_141997169_141997307_141997398_141997642_141997820_141997951
ENSMUST00000105994.4	chr4	+	1257	10	FSM	ENSMUSG00000074088.7	ENSMUST00000105994.4	1584	10	62	265	62	-265	multi-exon	FALSE	canonical	NA	NA	NA	NA	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGCCTCTGGTACCGCC	NA	NA	NA	NA	NA	NA	NA	NA	130253986	130283554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_130254143_130256420_130256551_130258867_130258962_130261981_130262148_130271838_130271962_130277186_130277308_130278274_130278358_130279746_130279809_130282367_130282472_130283336
ENSMUST00000106000.10	chr7	+	1865	8	FSM	ENSMUSG00000025510.15	ENSMUST00000106000.10	1865	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCGAATCAGCTTGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	141047305	141051386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_141047498_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
ENSMUST00000106003.2	chr7	+	449	4	FSM	ENSMUSG00000025508.14	ENSMUST00000106003.2	449	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTTTAAACATTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	141027762	141031263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_141027945_141028638_141028688_141030916_141031016_141031144
ENSMUST00000106026.3	chr17	-	1744	4	FSM	ENSMUSG00000078546.9	ENSMUST00000106026.3	1744	4	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCTAAGAAAATACCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	22127073	22098550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_22100076_22100938_22101066_22106291_22106340_22127029
ENSMUST00000106026.3-0	chr17	-	846	4	FSM	ENSMUSG00000078546.9	ENSMUST00000106026.3	1744	4	-73	971	-73	-971	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTACAAATGTAGTGAATG	NA	NA	NA	NA	NA	NA	NA	NA	22127146	22099521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_22100076_22100938_22101066_22106291_22106340_22127029
ENSMUST00000106033.5	chr7	-	2091	10	FSM	ENSMUSG00000038650.16	ENSMUST00000106033.5	2091	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	NA	NA	NA	NA	NA	NA	NA	NA	140749139	140740240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748588
ENSMUST00000106035.8	chr4	-	821	4	FSM	ENSMUSG00000028795.16	ENSMUST00000106035.8	821	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATCTTAGCAATTCCATG	NA	NA	NA	NA	NA	NA	NA	NA	129517671	129514268	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_129514670_129514776_129514944_129516392_129516581_129517606
ENSMUST00000106041.3	chr3	+	1644	11	FSM	ENSMUSG00000028175.16	ENSMUST00000106041.3	1971	11	0	327	0	-327	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACTGACTTAAAACTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	159201094	159234769	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159229413_159229587_159232167_159232345_159233580_159233767_159234635
ENSMUST00000106054.4	chr4	+	2909	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAACACAGCTTTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	129083552	129113400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
ENSMUST00000106054.4-0	chr4	+	2419	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	0	490	0	-490	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGATGGAGATGGACTGA	NA	NA	NA	NA	NA	NA	NA	NA	129083552	129112910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
ENSMUST00000106054.4-1	chr4	+	2413	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	142	354	142	-354	multi-exon	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCTGCATCATCTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	129083694	129113046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
ENSMUST00000106068.8	chr4	-	2049	11	FSM	ENSMUSG00000028789.17	ENSMUST00000106068.8	2049	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTAAACCCTTCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	128856221	128825814	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_128826285_128828249_128828465_128839849_128839963_128841251_128841412_128842584_128842751_128843382_128843518_128844392_128844566_128853576_128853751_128855155_128855353_128855876_128855995_128856093
ENSMUST00000106079.10	chr4	+	1957	7	FSM	ENSMUSG00000028796.18	ENSMUST00000106079.10	2535	7	125	453	125	-453	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGAGGTTTCTAGGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	128621502	128646221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_128621664_128637146_128637350_128638794_128638925_128639582_128639698_128640893_128641036_128641800_128642078_128645292
ENSMUST00000106090.8	chr4	-	1446	2	FSM	ENSMUSG00000046623.9	ENSMUST00000106090.8	1446	2	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGTAGTCAGGCGGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	127247874	127244878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_127246276_127247825
ENSMUST00000106104.8	chr7	+	1692	9	FSM	ENSMUSG00000015980.15	ENSMUST00000106104.8	1692	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATCAGGAAGTCTGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	138793187	138808924	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_138793269_138794164_138794322_138794590_138794876_138798143_138798275_138801309_138801369_138803504_138803658_138805916_138806278_138807882_138807983_138808559
ENSMUST00000106110.10	chr11	-	702	7	NNC	ENSMUSG00000025173.14	novel	2321	10	NA	NA	50	-3868	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCCATGTCGGTGTCAAG	NA	NA	NA	NA	NA	NA	NA	NA	121245167	121221918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_121221955_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
ENSMUST00000106133.8	chr11	-	1762	14	FSM	ENSMUSG00000025155.16	ENSMUST00000106133.8	1762	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATTTGCAGAGATCTCT	NA	NA	NA	NA	NA	NA	NA	NA	120687224	120680031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682787_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120687135
ENSMUST00000106139.8	chr7	-	2233	11	FSM	ENSMUSG00000030986.14	ENSMUST00000106139.8	2233	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAGAAAAAAATCAT	NA	NA	NA	NA	NA	NA	NA	NA	133378430	133322776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133378330
ENSMUST00000106148.10	chr11	-	830	7	FSM	ENSMUSG00000039450.12	ENSMUST00000106148.10	830	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGATCTGTGCTATCTG	NA	NA	NA	NA	NA	NA	NA	NA	120618069	120616224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_120616434_120616563_120616723_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
ENSMUST00000106150.3	chr4	+	1144	2	FSM	ENSMUSG00000050212.5	ENSMUST00000106150.3	1144	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGCGACTCAGTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	126042324	126043658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_126042839_126043028
ENSMUST00000106152.3	chr4	+	835	3	FSM	ENSMUSG00000050212.5	ENSMUST00000106152.3	1364	3	529	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTCTCTCACTGGTTAC	NA	NA	NA	NA	NA	NA	NA	NA	126042324	126043668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_126042425_126042743_126042839_126043028
ENSMUST00000106152.3-1	chr4	+	923	3	FSM	ENSMUSG00000050212.5	ENSMUST00000106152.3	1364	3	0	441	0	-431	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGTCCCGATGACACGC	NA	NA	NA	NA	NA	NA	NA	NA	126041795	126043227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_126042425_126042743_126042839_126043028
ENSMUST00000106154.8	chr11	-	873	6	FSM	ENSMUSG00000025144.18	ENSMUST00000106154.8	873	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	120604558	120601767	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120603265_120603539_120604518
ENSMUST00000106155.4	chr11	-	700	6	FSM	ENSMUSG00000025144.18	ENSMUST00000106155.4	700	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	120604558	120601767	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120603265_120603366_120604518
ENSMUST00000106190.10	chr4	-	968	3	FSM	ENSMUSG00000078570.11	ENSMUST00000106190.10	968	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGACCTTTCTTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	124744602	124743277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_124743756_124744024_124744227_124744314
ENSMUST00000106197.10	chr11	-	1867	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	2948	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	120472450	120468929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
ENSMUST00000106202.4	chr4	+	979	4	FSM	ENSMUSG00000028647.14	ENSMUST00000106202.4	1536	4	0	557	0	-557	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGGTTTATCACATTC	NA	NA	NA	NA	NA	NA	NA	NA	123798706	123804312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_123798881_123799026_123799100_123803426_123803476_123803629
ENSMUST00000106203.9	chr11	+	2903	22	FSM	ENSMUSG00000025793.18	ENSMUST00000106203.9	2903	22	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATGATTGATTGTTCG	NA	NA	NA	NA	NA	NA	NA	NA	120358460	120374805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369912_120370124_120370378_120370552_120370624_120370766_120370849_120371025_120373355_120373490_120373569_120373690_120373840_120373928_120374214
ENSMUST00000106204.2	chr4	+	1120	7	FSM	ENSMUSG00000043333.13	ENSMUST00000106204.2	1120	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACCAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	123703706	123723697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_123703970_123708035_123708185_123711656_123711770_123716549_123716651_123718653_123718715_123720630_123720693_123723326
ENSMUST00000106223.4	chr11	+	423	3	FSM	ENSMUSG00000078572.4	ENSMUST00000106223.4	781	3	16	342	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGATGATTTAATTTTG	NA	NA	NA	NA	NA	NA	NA	NA	119989769	119991189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_119989892_119989973_119990085_119990999
ENSMUST00000106259.9	chr11	+	3633	20	FSM	ENSMUSG00000025579.15	ENSMUST00000106259.9	3633	20	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTCACGTCACCTCATG	NA	NA	NA	NA	NA	NA	NA	NA	119158712	119176280	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_119159049_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
ENSMUST00000106291.10	chr3	+	1512	8	FSM	ENSMUSG00000078578.10	ENSMUST00000106291.10	1512	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGTTAGCTGCCTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	135143994	135171819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUST00000106296.9	chr11	-	5655	21	FSM	ENSMUSG00000033909.18	ENSMUST00000106296.9	5655	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTCTGTGTCTGCCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	118181057	118150476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_118152374_118152804_118152957_118153214_118153331_118153860_118153963_118154468_118154669_118155523_118156067_118158627_118158759_118159369_118160039_118162957_118163097_118163776_118163878_118164341_118164483_118165793_118165906_118166964_118167048_118167585_118167657_118168093_118168162_118170030_118170134_118170641_118170753_118175684_118175907_118176563_118176826_118178492_118178650_118180782
ENSMUST00000106300.2	chr7	-	1015	3	FSM	ENSMUSG00000045251.14	ENSMUST00000106300.2	1015	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	875	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	NA	NA	NA	NA	NA	NA	NA	NA	127021206	127018138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_127018814_127020576_127020691_127020980
ENSMUST00000106312.4	chr7	+	1675	2	FSM	ENSMUSG00000045598.11	ENSMUST00000106312.4	3342	2	233	1434	39	-1298	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATCCACCTGGTTCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	126832465	126835917	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126832659_126834435
ENSMUST00000106318.8	chr4	-	800	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106318.8	800	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTGTAGTTACTATT	NA	NA	NA	NA	NA	NA	NA	NA	119177743	119157206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_119157381_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ENSMUST00000106342.8	chr7	-	1840	7	FSM	ENSMUSG00000030689.16	ENSMUST00000106342.8	1840	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGCTTGGATTTCT	NA	NA	NA	NA	NA	NA	NA	NA	126460858	126450751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126452164_126456397_126456515_126456847_126456895_126457045_126457125_126460411_126460465_126460647_126460719_126460797
ENSMUST00000106348.8	chr7	-	1460	9	FSM	ENSMUSG00000030695.17	ENSMUST00000106348.8	1460	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTGTTCATGTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	126399619	126394406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126399459
ENSMUST00000106354.9	chr11	+	3869	11	FSM	ENSMUSG00000059248.14	ENSMUST00000106354.9	3869	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	117123110	117253139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_117123546_117181223_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ENSMUST00000106355.5	chr4	-	1588	2	FSM	ENSMUSG00000045268.14	ENSMUST00000106355.5	1588	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTACTTATTTGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	119031392	119026709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_119028240_119031334
ENSMUST00000106369.2	chr7	+	642	2	FSM	ENSMUSG00000047721.9	ENSMUST00000106369.2	642	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTCTCAGTGTGCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	126295144	126295869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126295272_126295354
ENSMUST00000106370.10	chr11	+	650	5	FSM	ENSMUSG00000090266.11	ENSMUST00000106370.10	1276	5	397	229	-20	-81	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGAAATGCTGATCATC	NA	NA	NA	NA	NA	NA	NA	NA	116734500	116740337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_116734601_116739079_116739185_116739726_116739965_116740041_116740127_116740215
ENSMUST00000106382.11	chr3	+	731	4	FSM	ENSMUSG00000028023.17	ENSMUST00000106382.11	1757	4	43	983	43	-289	multi-exon	FALSE	canonical	NA	NA	NA	NA	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTCCAGCATGGTGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	128993617	129012257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_128993812_128997585_128997642_129009287_129009494_129011982
ENSMUST00000106391.8	chr11	-	1841	10	FSM	ENSMUSG00000015869.17	ENSMUST00000106391.8	1841	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1580	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGCTGCTGAGCTCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	116381174	116361670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_116362382_116363002_116363150_116363769_116363841_116368027_116368174_116368885_116368942_116369350_116369467_116370477_116370651_116376694_116376762_116378943_116378997_116380873
ENSMUST00000106421.9	chr4	-	1801	8	FSM	ENSMUSG00000028541.15	ENSMUST00000106421.9	1801	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	472	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGGGACCATGGGGTT	NA	NA	NA	NA	NA	NA	NA	NA	117740309	117730498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_117731201_117734076_117734182_117734293_117734417_117734635_117734827_117738064_117738301_117738511_117738903_117738972_117739015_117740298
ENSMUST00000106425.4	chr11	-	2330	15	FSM	ENSMUSG00000020780.16	ENSMUST00000106425.4	2330	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCTGGTTTTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	116164961	116135991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116162738_116162806_116164751
ENSMUST00000106429.6	chr3	+	1160	2	FSM	ENSMUSG00000054091.10	ENSMUST00000106429.6	1160	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	797	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTTTCACACTGTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	122717851	122719833	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_122718306_122719127
ENSMUST00000106439.2	chr11	-	1411	9	FSM	ENSMUSG00000020775.14	ENSMUST00000106439.2	1411	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTCTTCACTTTCGGG	NA	NA	NA	NA	NA	NA	NA	NA	116029694	116022642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267_116029448_116029536
ENSMUST00000106466.10	chr3	-	1484	5	FSM	ENSMUSG00000028133.18	ENSMUST00000106466.10	1484	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTTGTGTCTGAGAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	120965344	120949046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_120949707_120949835_120949952_120950049_120950166_120952416_120952905_120965240
ENSMUST00000106498.8	chr4	+	2184	22	FSM	ENSMUSG00000028700.15	ENSMUST00000106498.8	2719	22	7	528	0	-121	multi-exon	TRUE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCCGTTGCCCTACCC	NA	NA	NA	NA	NA	NA	NA	NA	116007721	116016513	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_116007815_116008261_116008441_116009016_116009132_116009273_116009393_116009905_116009972_116010059_116010174_116010747_116010866_116011038_116011138_116011288_116011417_116011738_116011810_116012027_116012104_116012259_116012344_116012425_116012468_116012656_116012716_116012925_116012999_116013082_116013212_116013292_116013419_116015089_116015155_116015348_116015394_116015619_116015756_116016179_116016290_116016376
ENSMUST00000106517.9	chr7	+	1279	4	FSM	ENSMUSG00000030922.13	ENSMUST00000106517.9	1279	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTGTTGTTTTGTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	119495514	119515976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_119495796_119508893_119509186_119513395_119513489_119515363
ENSMUST00000106520.9	chr7	+	2492	20	FSM	ENSMUSG00000030924.17	ENSMUST00000106520.9	2492	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCCTCCTCTTAGATGT	NA	NA	NA	NA	NA	NA	NA	NA	119393232	119448166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_119393293_119393580_119393726_119398787_119398901_119400452_119400580_119401963_119402061_119404365_119404510_119417605_119417695_119418654_119418771_119422978_119423118_119423267_119423363_119424758_119424862_119426525_119426603_119427314_119427430_119431893_119431999_119433486_119433625_119442464_119442558_119443070_119443288_119443481_119443670_119444605_119444725_119447954
ENSMUST00000106530.8	chr11	-	836	5	FSM	ENSMUSG00000020736.13	ENSMUST00000106530.8	836	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGATCTTTGATGCT	NA	NA	NA	NA	NA	NA	NA	NA	115382641	115381245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_115381596_115381678_115381794_115381963_115382025_115382096_115382198_115382432
ENSMUST00000106533.8	chr11	+	597	5	FSM	ENSMUSG00000016940.19	ENSMUST00000106533.8	2649	5	162	1890	162	-1890	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCCGAGCGAAAAGGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	115311137	115320210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_115311333_115312808_115312918_115315309_115315402_115318258_115318355_115320105
ENSMUST00000106536.8	chr3	-	1839	15	FSM	ENSMUSG00000027981.15	ENSMUST00000106536.8	1839	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTCTAATTTTTCATTA	NA	NA	NA	NA	NA	NA	NA	NA	113423798	113399112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_113399297_113401988_113402061_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
ENSMUST00000106537.8	chr11	-	682	7	FSM	ENSMUSG00000034566.11	ENSMUST00000106537.8	682	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	NA	NA	NA	NA	NA	NA	NA	115310743	115306514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310017_115310120_115310717
ENSMUST00000106567.2	chr3	-	2450	1	FSM	ENSMUSG00000049300.12	ENSMUST00000106567.2	2450	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTGCTGGGGCTCTATT	NA	NA	NA	NA	NA	NA	NA	NA	110158314	110155864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_110155900_110158300
ENSMUST00000106588.8	chr7	-	640	5	FSM	ENSMUSG00000008683.17	ENSMUST00000106588.8	640	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	117714900	117708286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117714694
ENSMUST00000106602.10	chr11	+	371	5	FSM	ENSMUSG00000057322.13	ENSMUST00000106602.10	371	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	114559349	114563157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_114559436_114559606_114559641_114559731_114559793_114562559_114562683_114563090
ENSMUST00000106609.8	chr3	+	2043	12	FSM	ENSMUSG00000027884.17	ENSMUST00000106609.8	2043	12	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	108561228	108586156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_108561297_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
ENSMUST00000106622.3	chr3	-	2752	3	FSM	ENSMUSG00000068732.6	ENSMUST00000106622.3	2752	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGCCTGCTTTGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	108469486	108463740	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_108466277_108467502_108467635_108469402
ENSMUST00000106635.2	chr11	+	3671	2	FSM	ENSMUSG00000051497.16	ENSMUST00000106635.2	3671	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTGTACATCCCTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	110888312	110918794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_110888424_110915234
ENSMUST00000106650.9	chr4	+	2068	5	FSM	ENSMUSG00000003411.11	ENSMUST00000106650.9	3327	5	0	1259	0	877	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACACTCTTGTCAACATCC	NA	NA	NA	NA	NA	NA	NA	NA	108736259	108799262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_108736416_108747504_108747733_108781102_108781222_108786598_108786724_108797822
ENSMUST00000106676.8	chr11	+	962	5	FSM	ENSMUSG00000020612.17	ENSMUST00000106676.8	962	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCTAACATTTTCATGGA	NA	NA	NA	NA	NA	NA	NA	NA	109541400	109552579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_109541451_109544604_109544788_109550824_109550996_109551860_109551953_109552113
ENSMUST00000106683.8	chr3	-	745	5	FSM	ENSMUSG00000068762.12	ENSMUST00000106683.8	745	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGCACTTTGAGCAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	107850678	107846277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_107846633_107848308_107848420_107848504_107848601_107850017_107850083_107850560
ENSMUST00000106701.2	chr4	-	772	5	FSM	ENSMUSG00000028603.16	ENSMUST00000106701.2	772	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCTACTGTGCTTGATG	NA	NA	NA	NA	NA	NA	NA	NA	107928616	107901746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453
ENSMUST00000106702.4	chr11	+	914	3	FSM	ENSMUSG00000020611.15	ENSMUST00000106702.4	914	3	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTATGTCCTCTTTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	109253656	109271301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_109254083_109256361_109256589_109271040
ENSMUST00000106736.3	chr3	+	1165	3	FSM	ENSMUSG00000056260.16	ENSMUST00000106736.3	1669	3	74	430	31	243	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTACGATGGGGAACTAAA	NA	NA	NA	NA	NA	NA	NA	NA	106629282	106643463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_106629423_106641673_106641956_106642720
ENSMUST00000106753.3	chr4	+	1148	6	FSM	ENSMUSG00000028618.12	ENSMUST00000106753.3	1148	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGGGTTGTATTTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	107035723	107057895	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_107036115_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
ENSMUST00000106769.8	chr3	+	1818	14	FSM	ENSMUSG00000045576.17	ENSMUST00000106769.8	2428	14	610	0	46	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTAGTGTATTTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	104772428	104834176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782142_104782259_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826762_104826818_104829502_104829596_104833745
ENSMUST00000106775.8	chr3	-	3584	21	FSM	ENSMUSG00000002227.16	ENSMUST00000106775.8	3584	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	104725879	104702151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711702_104711786_104712030_104712219_104712424_104725251_104725438_104725672
ENSMUST00000106787.8	chr3	+	959	5	FSM	ENSMUSG00000002233.14	ENSMUST00000106787.8	959	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGCTCACAGGAGGAGT	NA	NA	NA	NA	NA	NA	NA	NA	104696349	104701660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_104696418_104699204_104699369_104699880_104700002_104700215_104700347_104701185
ENSMUST00000106907.9	chr4	+	1374	6	FSM	ENSMUSG00000028525.17	ENSMUST00000106907.9	1374	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACATGGCTTTGATCATA	NA	NA	NA	NA	NA	NA	NA	NA	102111938	102413121	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_102112654_102344407_102344603_102354818_102354856_102354950_102355022_102363189_102363240_102412815
ENSMUST00000106950.8	chr7	+	1749	10	FSM	ENSMUSG00000099481.7	ENSMUST00000106950.8	3131	10	11	1371	11	-690	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGACCCAGCTTGCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	101714728	101731598	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_101715012_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
ENSMUST00000106957.8	chr11	+	943	8	FSM	ENSMUSG00000061086.13	ENSMUST00000106957.8	943	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCGTTGATTTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	104467810	104478041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_104467994_104468246_104468401_104471227_104471256_104474803_104474954_104475264_104475439_104475762_104475841_104476552_104476598_104477910
ENSMUST00000106965.8	chr7	-	743	5	FSM	ENSMUSG00000064307.14	ENSMUST00000106965.8	743	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAAGTCCCCTGTACCTT	NA	NA	NA	NA	NA	NA	NA	NA	101570406	101562196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_101562416_101562641_101562791_101564768_101564975_101569843_101569982_101570375
ENSMUST00000106966.8	chr7	-	821	5	FSM	ENSMUSG00000064307.14	ENSMUST00000106966.8	821	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAAGTCCCCTGTACCTT	NA	NA	NA	NA	NA	NA	NA	NA	101583075	101562196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_101562420_101562641_101562791_101564768_101564975_101569843_101569982_101582970
ENSMUST00000106968.8	chr7	-	766	5	FSM	ENSMUSG00000064307.14	ENSMUST00000106968.8	766	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCCTGTACCTTGTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	101570419	101562190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_101562420_101562641_101562791_101564768_101564975_101569843_101569982_101570375
ENSMUST00000106978.8	chr7	+	778	6	FSM	ENSMUSG00000030649.19	ENSMUST00000106978.8	841	6	0	63	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCCAGGTGTGGTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	101530531	101548687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_101530610_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUST00000107040.10	chr11	+	1959	9	FSM	ENSMUSG00000056938.17	ENSMUST00000107040.10	1959	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	102992507	103003023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_102992615_102993507_102993923_102994351_102994471_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUST00000107040.10-0	chr11	+	1671	9	FSM	ENSMUSG00000056938.17	ENSMUST00000107040.10	1959	9	44	244	38	-79	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACTCGGCTCCCTGCCGAG	NA	NA	NA	NA	NA	NA	NA	NA	102992551	103002779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_102992615_102993507_102993923_102994351_102994471_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUST00000107041.5	chr7	+	1232	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4842	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	51396394	51397626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_51396400_51397600
ENSMUST00000107051.10	chr4	-	813	6	NNC	ENSMUSG00000028563.17	novel	1027	7	NA	NA	186	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGACCTGTTATTAA	NA	NA	NA	NA	NA	NA	NA	NA	98271297	98243606	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263266_98271200
ENSMUST00000107075.9	chr11	-	2314	3	FSM	ENSMUSG00000034520.15	ENSMUST00000107075.9	2314	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	NA	NA	NA	NA	NA	NA	NA	102695727	102690404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_102692022_102693666_102693743_102695106
ENSMUST00000107081.8	chr11	-	818	3	FSM	ENSMUSG00000078640.10	ENSMUST00000107081.8	818	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTCTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	102470287	102467223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_102467624_102469575_102469722_102470015
ENSMUST00000107096.2	chr7	-	952	6	FSM	ENSMUSG00000030744.14	ENSMUST00000107096.2	952	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATTAAACTCATGAGTATG	NA	NA	NA	NA	NA	NA	NA	NA	99132858	99127110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_99127523_99129110_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
ENSMUST00000107098.8	chr11	-	1606	12	FSM	ENSMUSG00000018677.10	ENSMUST00000107098.8	1606	12	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAACCAA	NA	NA	NA	NA	NA	NA	NA	NA	102298315	102293810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296629_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ENSMUST00000107100.3	chr7	+	2335	3	FSM	ENSMUSG00000055407.15	ENSMUST00000107100.3	2335	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTCTCTGGCTCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	98917552	98986344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_98918521_98964895_98965110_98985191
ENSMUST00000107104.3	chr4	+	1713	14	FSM	ENSMUSG00000028576.13	ENSMUST00000107104.3	1713	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTCTACATCTGCATC	NA	NA	NA	NA	NA	NA	NA	NA	94502727	94552935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823_94550904_94552452
ENSMUST00000107110.8	chr4	-	3671	6	FSM	ENSMUSG00000008489.19	ENSMUST00000107110.8	3671	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGTATCTTTAAATACAT	NA	NA	NA	NA	NA	NA	NA	NA	91260271	91138999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_91141808_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91260136
ENSMUST00000107120.8	chr4	-	4191	8	FSM	ENSMUSG00000008489.19	ENSMUST00000107120.8	4191	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGTATCTTTAAATACAT	NA	NA	NA	NA	NA	NA	NA	NA	91264700	91138999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_91141805_91142377_91142417_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91199809_91199901_91264172
ENSMUST00000107124.10	chr4	-	4127	7	FSM	ENSMUSG00000008489.19	ENSMUST00000107124.10	4127	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAACTGTGTATCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	91264733	91139005	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_91141805_91142377_91142417_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91264172
ENSMUST00000107147.2	chr4	+	1177	6	FSM	ENSMUSG00000038368.17	ENSMUST00000107147.2	1177	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGACTTTTATTTTTAAGT	NA	NA	NA	NA	NA	NA	NA	NA	88318801	88329248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_88318980_88319253_88319432_88321547_88321646_88325349_88325602_88327157_88327234_88328853
ENSMUST00000107173.9	chr11	-	4311	4	FSM	ENSMUSG00000003518.14	ENSMUST00000107173.9	4311	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGTCTGTTTTGTGTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	101877839	101861968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_101865766_101872442_101872670_101875437_101875578_101877692
ENSMUST00000107176.8	chr11	-	2377	13	FSM	ENSMUSG00000017724.15	ENSMUST00000107176.8	2377	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTATTTGCTCTTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	101676197	101660572	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665054_101666143_101666271_101667918_101667973_101674792_101674841_101675055_101675150_101675342_101675454_101675933
ENSMUST00000107180.8	chr7	+	1406	4	FSM	ENSMUSG00000030643.15	ENSMUST00000107180.8	1406	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTCAGCAGTCTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	92469112	92485855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_92469292_92473005_92473090_92478733_92478918_92484896
ENSMUST00000107183.8	chr3	-	1872	13	FSM	ENSMUSG00000015702.14	ENSMUST00000107183.8	1872	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACCCTAAAACAAAGACGG	NA	NA	NA	NA	NA	NA	NA	NA	95214115	95203406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_95204164_95204547_95204671_95207463_95207523_95207612_95207709_95207841_95207927_95208402_95208463_95208621_95208702_95209645_95209737_95209976_95210091_95210296_95210392_95213172_95213270_95213642_95213734_95213991
ENSMUST00000107204.8	chr3	-	1539	6	FSM	ENSMUSG00000038766.17	ENSMUST00000107204.8	1539	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGGAAACATGCGCTTA	NA	NA	NA	NA	NA	NA	NA	NA	95125065	95110323	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_95111237_95111951_95112120_95113773_95113914_95116150_95116248_95123524_95123580_95124899
ENSMUST00000107249.8	chr11	+	732	4	FSM	ENSMUSG00000063316.14	ENSMUST00000107249.8	732	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	NA	NA	NA	NA	NA	NA	NA	NA	101333271	101336355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_101333632_101334326_101334497_101336045_101336157_101336264
ENSMUST00000107256.4	chr7	+	949	3	FSM	ENSMUSG00000030559.9	ENSMUST00000107256.4	1577	3	0	628	0	115	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATCAGCACAGTGTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	88079480	88140152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_88079812_88099688_88099970_88139815
ENSMUST00000107284.8	chr11	-	4207	21	FSM	ENSMUSG00000006920.15	ENSMUST00000107284.8	4207	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCAAGTTGTGTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	101117289	101081940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_101083826_101084044_101084130_101084551_101084633_101085293_101085376_101085711_101085808_101086344_101086524_101090083_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108190_101109479_101109547_101117221
ENSMUST00000107285.8	chr11	-	4193	21	FSM	ENSMUSG00000006920.15	ENSMUST00000107285.8	4193	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGGCAAGTTGTGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	101117276	101081941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_101083826_101084044_101084130_101084551_101084633_101085293_101085376_101085711_101085808_101086344_101086524_101090083_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108190_101109479_101109547_101117221
ENSMUST00000107303.10	chr11	+	1191	7	FSM	ENSMUSG00000017801.16	ENSMUST00000107303.10	1736	7	27	518	4	-518	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGCCAGCTCAGGGTAGG	NA	NA	NA	NA	NA	NA	NA	NA	100978129	100982515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_100978194_100978579_100978617_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ENSMUST00000107335.2	chr3	+	926	3	FSM	ENSMUSG00000074457.11	ENSMUST00000107335.2	926	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCAACCTCTTAGCCGGG	NA	NA	NA	NA	NA	NA	NA	NA	90444621	90450321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_90444725_90449306_90449480_90449671
ENSMUST00000107342.2	chr3	-	2411	4	FSM	ENSMUSG00000001017.16	ENSMUST00000107342.2	2411	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTGGTTGAGTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	90416792	90407001	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_90407415_90410402_90410587_90413414_90414934_90416497
ENSMUST00000107346.8	chr3	-	1321	5	FSM	ENSMUSG00000001017.16	ENSMUST00000107346.8	1321	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTACATCTTTCTTTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	90416781	90406800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_90407415_90410402_90410590_90413414_90413569_90414851_90414934_90416497
ENSMUST00000107376.8	chr11	+	1727	4	FSM	ENSMUSG00000017837.13	ENSMUST00000107376.8	1727	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCACTTCCTCTTCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	100510069	100517625	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_100510641_100515017_100515126_100515768_100516011_100516819
ENSMUST00000107397.2	chr11	-	1348	8	FSM	ENSMUSG00000017176.18	ENSMUST00000107397.2	1348	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTGGATGCACGCGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	100331754	100320184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654
ENSMUST00000107420.8	chr4	+	2752	7	FSM	ENSMUSG00000059810.19	ENSMUST00000107420.8	2752	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTGTGTATTCCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	62592275	62621255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_62592548_62607735_62608864_62615507_62615570_62618234_62618337_62618590_62618653_62619270_62619438_62620296
ENSMUST00000107444.8	chr4	-	1247	12	FSM	ENSMUSG00000028393.11	ENSMUST00000107444.8	1247	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGCCCTCTTCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	62438131	62427405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438031
ENSMUST00000107459.2	chr4	-	654	3	FSM	ENSMUSG00000066149.12	ENSMUST00000107459.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGCTTAACTGATTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	62326862	62312870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_62313259_62320960_62321153_62326788
ENSMUST00000107460.8	chr3	-	785	5	FSM	ENSMUSG00000027953.14	ENSMUST00000107460.8	785	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	89177802	89175552	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_89175906_89175979_89176100_89177133_89177258_89177368_89177447_89177692
ENSMUST00000107473.3	chr11	+	2458	8	FSM	ENSMUSG00000037992.17	ENSMUST00000107473.3	3238	8	0	780	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATACTGAAGGAATTTGT	NA	NA	NA	NA	NA	NA	NA	NA	98851237	98864988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_98851960_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
ENSMUST00000107485.8	chr11	+	2091	3	FSM	ENSMUSG00000052915.15	ENSMUST00000107485.8	2091	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGACTATCTTGGGATAT	NA	NA	NA	NA	NA	NA	NA	NA	98686616	98691878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_98687431_98689965_98690190_98690825
ENSMUST00000107491.11	chr3	-	1375	12	FSM	ENSMUSG00000068921.15	ENSMUST00000107491.11	1375	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	NA	NA	NA	NA	NA	NA	NA	88857258	88830941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_88831221_88832600_88832719_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
ENSMUST00000107570.2	chr4	-	3244	3	FSM	ENSMUSG00000038668.15	ENSMUST00000107570.2	3244	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATGTGTGGTTCTGGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	58499403	58435254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_58437635_58486476_58487225_58499287
ENSMUST00000107575.9	chr4	-	3421	4	FSM	ENSMUSG00000038668.15	ENSMUST00000107575.9	3421	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATGTGTGGTTCTGGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	58553553	58435254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_58437635_58486476_58487225_58504621_58504782_58553420
ENSMUST00000107583.3	chr11	+	737	3	FSM	ENSMUSG00000078695.9	ENSMUST00000107583.3	737	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	479	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	97576778	97579447	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_97577042_97577326_97577447_97579093
ENSMUST00000107591.9	chr7	+	1391	8	FSM	ENSMUSG00000030498.16	ENSMUST00000107591.9	2232	8	0	841	0	-836	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGTAGCACTATTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	51528797	51643365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_51529119_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
ENSMUST00000107623.8	chr11	-	2907	7	FSM	ENSMUSG00000018678.14	ENSMUST00000107623.8	2907	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCGTTGTAACTGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	96859491	96844298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_96845397_96846600_96846795_96846930_96847106_96848249_96848563_96851863_96852836_96854190_96854268_96859413
ENSMUST00000107658.8	chr11	-	1826	4	FSM	ENSMUSG00000038615.18	ENSMUST00000107658.8	4219	4	-269	2662	-269	-926	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCAGCTCGAAGAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	96719050	96710918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023
ENSMUST00000107661.10	chr11	-	2197	8	FSM	ENSMUSG00000020876.15	ENSMUST00000107661.10	2197	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGTTGTTGCAATTTG	NA	NA	NA	NA	NA	NA	NA	NA	96668385	96658702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96667793_96667888_96668280
ENSMUST00000107684.2	chr11	-	596	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107684.2	596	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCATGTGCCTGTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	95966445	95963815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966382
ENSMUST00000107696.2	chr4	+	1425	3	FSM	ENSMUSG00000039634.13	ENSMUST00000107696.2	2965	3	0	1540	0	-1540	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGTTTCAGTCAACTTT	NA	NA	NA	NA	NA	NA	NA	NA	49521216	49529977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_49521596_49522397_49522483_49529016
ENSMUST00000107700.4	chr11	+	849	7	FSM	ENSMUSG00000006058.11	ENSMUST00000107700.4	849	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTTCCCCCAGTAT	NA	NA	NA	NA	NA	NA	NA	NA	95925790	95938256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95938020
ENSMUST00000107704.2	chr4	+	1597	3	FSM	ENSMUSG00000039693.12	ENSMUST00000107704.2	1597	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTTACACTGTGTATGTT	NA	NA	NA	NA	NA	NA	NA	NA	48540498	48561919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_48540569_48552379_48552831_48560843
ENSMUST00000107720.9	chr4	+	5770	8	FSM	ENSMUSG00000061455.14	ENSMUST00000107720.9	5770	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAATTCCTGTTGTATATT	NA	NA	NA	NA	NA	NA	NA	NA	48124925	48186507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_48124959_48131764_48131950_48140419_48140486_48158810_48159034_48166927_48167044_48167205_48167257_48180669_48180757_48181498
ENSMUST00000107722.8	chr11	+	3063	10	FSM	ENSMUSG00000057522.16	ENSMUST00000107722.8	3063	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCTGTCATTGATGTA	NA	NA	NA	NA	NA	NA	NA	NA	95304923	95384232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
ENSMUST00000107724.9	chr11	+	2881	11	FSM	ENSMUSG00000057522.16	ENSMUST00000107724.9	2881	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCTGTCATTGATGTA	NA	NA	NA	NA	NA	NA	NA	NA	95304905	95384232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_95304958_95305157_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
ENSMUST00000107739.8	chr11	-	4636	25	FSM	ENSMUSG00000001507.17	ENSMUST00000107739.8	4636	25	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTGTCTGCTCCTACCT	NA	NA	NA	NA	NA	NA	NA	NA	94960024	94935299	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_94936590_94937274_94937417_94937746_94937873_94942277_94942377_94943269_94943384_94944050_94944174_94944557_94944741_94944900_94945004_94946521_94946600_94946682_94946763_94947266_94947339_94947529_94947678_94947909_94948008_94948096_94948247_94948792_94948930_94949037_94949106_94950149_94950237_94950381_94950519_94950604_94950694_94952703_94952901_94953378_94953590_94953960_94954048_94956588_94956839_94959050_94959131_94959537
ENSMUST00000107752.12	chr7	+	1400	9	FSM	ENSMUSG00000030825.20	ENSMUST00000107752.12	1400	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGAGTGGTCGTGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	45204316	45216745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_45204491_45205478_45205518_45205736_45205820_45207031_45207099_45208804_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
ENSMUST00000107801.10	chr7	+	1170	11	FSM	ENSMUSG00000030796.18	ENSMUST00000107801.10	3396	11	1466	760	107	-69	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTCTTTGAAGTCTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	44866741	44882283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ENSMUST00000107807.2	chr4	-	442	2	FSM	ENSMUSG00000078713.9	ENSMUST00000107807.2	442	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCATGAACTCCACCCCT	NA	NA	NA	NA	NA	NA	NA	NA	45108108	45105394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_45105645_45107916
ENSMUST00000107808.3	chr4	-	679	3	FSM	ENSMUSG00000078713.9	ENSMUST00000107808.3	679	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGGTTTTGTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	45108108	45105211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_45105645_45106838_45106889_45107912
ENSMUST00000107816.4	chr3	+	1268	7	FSM	ENSMUSG00000027776.13	ENSMUST00000107816.4	1268	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACAGATGTTCTTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	68598756	68605876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_68598900_68599355_68599490_68601493_68601608_68602522_68602565_68602637_68602680_68602769_68602914_68605227
ENSMUST00000107821.9	chr11	-	2050	11	FSM	ENSMUSG00000020863.16	ENSMUST00000107821.9	2050	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATATGAGGCATACTAG	NA	NA	NA	NA	NA	NA	NA	NA	94212814	94181886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_94182405_94183910_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ENSMUST00000107834.2	chr7	+	1429	8	FSM	ENSMUSG00000003184.16	ENSMUST00000107834.2	1429	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGCTGTCGACTGCGT	NA	NA	NA	NA	NA	NA	NA	NA	44647372	44651813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_44647491_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650447_44651096_44651213_44651587
ENSMUST00000107845.4	chr4	+	1031	5	FSM	ENSMUSG00000028478.19	ENSMUST00000107845.4	1031	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	NA	NA	NA	NA	NA	NA	NA	NA	44012685	44032846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_44013003_44018812_44018851_44019873_44019992_44025448_44025561_44032400
ENSMUST00000107847.10	chr4	+	1121	6	FSM	ENSMUSG00000028478.19	ENSMUST00000107847.10	1121	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	NA	NA	NA	NA	NA	NA	NA	NA	44012637	44032846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44031399_44031436_44032400
ENSMUST00000107855.2	chr4	+	1816	3	FSM	ENSMUSG00000028480.15	ENSMUST00000107855.2	1816	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTCCTCTAATGCGATT	NA	NA	NA	NA	NA	NA	NA	NA	43957691	43979118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_43957774_43970499_43970578_43977462
ENSMUST00000107881.8	chr11	-	2476	3	ISM	ENSMUSG00000003949.17	ENST00000573945.5	3066	4	1484	580	1484	-580	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	428	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAACTATTCCGTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	90279033	90229967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_90231801_90236583_90236805_90278611
ENSMUST00000107886.9	chr4	+	2706	9	FSM	ENSMUSG00000028468.16	ENSMUST00000107886.9	5888	9	243	2939	0	1418	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGAGGAGGGAGGTGGCCG	NA	NA	NA	NA	NA	NA	NA	NA	43578957	43584548	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_43579004_43579374_43579510_43579886_43580024_43580295_43580380_43580476_43580627_43580863_43581011_43581187_43581316_43581486_43581677_43582859
ENSMUST00000107910.8	chr7	-	1948	10	FSM	ENSMUSG00000060601.14	ENSMUST00000107910.8	1948	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTTTGAGTACAAGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	44203347	44199058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202182_44203002_44203133_44203232
ENSMUST00000107911.8	chr7	-	1988	10	FSM	ENSMUSG00000060601.14	ENSMUST00000107911.8	1988	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTGAGCCCAGTGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	44203372	44199040	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202179_44203002_44203133_44203232
ENSMUST00000107912.8	chr7	-	1839	9	FSM	ENSMUSG00000060601.14	ENSMUST00000107912.8	1839	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGCCCAGTGTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	44203110	44199039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202182_44203002
ENSMUST00000107913.10	chr4	-	2098	9	FSM	ENSMUSG00000028464.17	ENSMUST00000107913.10	2098	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCAGGGCCCTTTAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	43523388	43514711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_43516004_43518229_43518300_43518401_43518465_43518643_43518720_43519226_43519298_43519388_43519507_43519610_43519745_43522674_43522801_43523240
ENSMUST00000107922.3	chr4	+	865	5	FSM	ENSMUSG00000028461.13	ENSMUST00000107922.3	865	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	43493388	43495921	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508
ENSMUST00000107949.8	chr7	+	2705	4	FSM	ENSMUSG00000045411.17	ENSMUST00000107949.8	3610	4	655	250	0	-250	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTTATGTGACACTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	43896865	43901486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732
ENSMUST00000107971.9	chr3	+	3567	8	FSM	ENSMUSG00000036580.16	ENSMUST00000107971.9	3567	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGCTGGGCCTCAGATGT	NA	NA	NA	NA	NA	NA	NA	NA	55019549	55044732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_55019639_55024404_55025217_55029020_55029219_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
ENSMUST00000108038.2	chr4	+	1859	10	FSM	ENSMUSG00000036073.18	ENSMUST00000108038.2	1859	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGAGGAGTAGTGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	41755227	41758695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_41755653_41755960_41756131_41756346_41756423_41756512_41756562_41756681_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083
ENSMUST00000108070.9	chr7	-	1327	6	FSM	ENSMUSG00000030499.10	ENSMUST00000108070.9	2409	6	169	913	16	-909	multi-exon	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGTACTAACTGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	34352093	34339352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_34339875_34341232_34341539_34344262_34344408_34349380_34349557_34350171_34350265_34352008
ENSMUST00000108089.8	chr4	-	1336	7	FSM	ENSMUSG00000028416.14	ENSMUST00000108089.8	1336	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGGCTCTGTGGTGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	40948281	40936397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_40936677_40937131_40937195_40939076_40939185_40941524_40941639_40943624_40943708_40946168_40946298_40947721
ENSMUST00000108126.8	chr4	-	2644	10	FSM	ENSMUSG00000028300.15	ENSMUST00000108126.8	2644	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGTTTTAGTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	35225834	35191286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_35193069_35193184_35193295_35194136_35194195_35196972_35197209_35205767_35205885_35211291_35211365_35213008_35213074_35213548_35213645_35217212_35217273_35225787
ENSMUST00000108127.4	chr4	-	3193	11	FSM	ENSMUSG00000028300.15	ENSMUST00000108127.4	3193	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGTTTTAGTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	35225880	35191286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_35193069_35193184_35193295_35194136_35194195_35196972_35197209_35205767_35205885_35211291_35211365_35213008_35213074_35213548_35213645_35217212_35217273_35218413_35218917_35225787
ENSMUST00000108134.8	chr4	-	782	3	FSM	ENSMUSG00000028295.15	ENSMUST00000108134.8	782	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	34778364	34768663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_34769148_34771257_34771415_34778223
ENSMUST00000108147.3	chr7	-	1048	6	FSM	ENSMUSG00000006311.9	ENSMUST00000108147.3	1048	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	505	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCGAACCTGCGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	30335277	30333040	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_30333260_30333413_30333527_30334037_30334515_30334732_30334793_30334999_30335087_30335185
ENSMUST00000108182.10	chr3	-	4980	7	FSM	ENSMUSG00000027708.15	ENSMUST00000108182.10	4980	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTTTTATTGCTTCCAT	NA	NA	NA	NA	NA	NA	NA	NA	35987621	35946253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119_35975337_35986933
ENSMUST00000108195.10	chr3	-	659	6	FSM	ENSMUSG00000027679.14	ENSMUST00000108195.10	659	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTCATTGCTGACTTA	NA	NA	NA	NA	NA	NA	NA	NA	34135470	34131427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
ENSMUST00000108196.8	chr7	-	1192	10	FSM	ENSMUSG00000001794.14	ENSMUST00000108196.8	1192	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGACTCTGAGTGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	29892531	29886414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892454
ENSMUST00000108237.2	chr7	+	1086	7	FSM	ENSMUSG00000030588.13	ENSMUST00000108237.2	1086	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATGGGGGGCCTTCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	28937876	28947018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_28938037_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945325_28945420_28946661
ENSMUST00000108240.3	chr4	+	955	12	FSM	ENSMUSG00000028252.21	ENSMUST00000108240.3	1406	12	12	439	12	-439	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCAAGATGATGCTGGACA	NA	NA	NA	NA	NA	NA	NA	NA	21727766	21747523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482
ENSMUST00000108268.10	chr11	-	1520	10	FSM	ENSMUSG00000001123.16	ENSMUST00000108268.10	1520	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	564	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGATGGCTGGCTTATT	NA	NA	NA	NA	NA	NA	NA	NA	78875772	78853799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_78854368_78856517_78856681_78856823_78856913_78857702_78857745_78858269_78858321_78858823_78858860_78862142_78862254_78863813_78864016_78867438_78867528_78875603
ENSMUST00000108279.9	chr7	+	1563	7	FSM	ENSMUSG00000030598.16	ENSMUST00000108279.9	1563	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	28416297	28437569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28437089
ENSMUST00000108295.8	chr11	+	1371	5	FSM	ENSMUSG00000002058.14	ENSMUST00000108295.8	1371	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTGTCTATAGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	78234331	78239990	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_78234613_78238043_78238158_78238622_78238726_78238912_78239086_78239290
ENSMUST00000108297.3	chr4	-	4201	2	FSM	ENSMUSG00000049225.15	ENSMUST00000108297.3	4201	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTGAAATCTGGCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	11966452	11958183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_11962234_11966301
ENSMUST00000108322.9	chr11	+	874	10	FSM	ENSMUSG00000002059.19	ENSMUST00000108322.9	1685	10	461	350	318	-347	multi-exon	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCAGTGAGGACTGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	78080065	78082664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
ENSMUST00000108324.4	chr4	+	1975	12	FSM	ENSMUSG00000028212.17	ENSMUST00000108324.4	2908	12	6	927	6	-920	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATCAGTAAGGCACTGAA	NA	NA	NA	NA	NA	NA	NA	NA	11191735	11203755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_11191816_11192680_11192718_11192814_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
ENSMUST00000108334.8	chr4	-	2685	14	FSM	ENSMUSG00000028207.19	ENSMUST00000108334.8	2685	14	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGATTGTCATTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	9643717	9575266	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9643534
ENSMUST00000108346.5	chr3	+	2569	6	FSM	ENSMUSG00000047213.15	ENSMUST00000108346.5	4929	6	0	2360	0	100	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCAAACTTTTAATATGGC	NA	NA	NA	NA	NA	NA	NA	NA	16237399	16268659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_16237685_16238085_16238111_16243641_16243728_16257350_16257384_16257989_16259589_16268118
ENSMUST00000108357.8	chr7	+	782	5	FSM	ENSMUSG00000040466.17	ENSMUST00000108357.8	782	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATTTTCCTCTCTCTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	27151842	27165409	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_27151976_27158680_27158846_27158987_27159078_27161991_27162121_27165144
ENSMUST00000108382.2	chr7	-	1756	6	FSM	ENSMUSG00000058709.12	ENSMUST00000108382.2	1756	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGGTTTTGACCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	26865838	26858412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26865740
ENSMUST00000108403.4	chr7	+	652	3	FSM	ENSMUSG00000063439.8	ENSMUST00000108403.4	1021	3	0	369	0	-369	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGGGGCTGACCGCTACCG	NA	NA	NA	NA	NA	NA	NA	NA	25380582	25385614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_25380900_25382715_25382842_25385405
ENSMUST00000108425.8	chr11	+	2608	3	FSM	ENSMUSG00000017776.16	ENSMUST00000108425.8	4290	3	27	1655	0	-812	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTGAATGTCTTTAGTC	NA	NA	NA	NA	NA	NA	NA	NA	75570136	75596079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_75570491_75583022_75583389_75594191
ENSMUST00000108429.8	chr7	+	633	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108429.8	633	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	24584138	24589231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_24584295_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
ENSMUST00000108448.8	chr11	-	3239	9	FSM	ENSMUSG00000001323.18	ENSMUST00000108448.8	3239	9	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCATTTATTTGGGGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	74816599	74797618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803959_74810262_74810489_74816444
ENSMUST00000108468.5	chr7	+	763	7	FSM	ENSMUSG00000030401.17	ENSMUST00000108468.5	1076	7	0	313	0	-313	multi-exon	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCATTTCCCGTGCATCC	NA	NA	NA	NA	NA	NA	NA	NA	19024993	19029772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_19025102_19027000_19027209_19027527_19027667_19027772_19027843_19028343_19028391_19029375_19029435_19029640
ENSMUST00000108473.10	chr7	+	1846	13	FSM	ENSMUSG00000030409.17	ENSMUST00000108473.10	2588	13	56	686	0	-281	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTAGGAAGGTCGAGCGA	NA	NA	NA	NA	NA	NA	NA	NA	18817865	18827060	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_18818080_18819910_18820003_18820256_18820341_18820413_18820510_18820817_18820967_18821164_18821259_18821418_18821626_18821925_18822190_18822835_18822922_18824853_18824966_18825605_18825770_18825863_18825962_18826874
ENSMUST00000108474.2	chr7	+	2591	16	FSM	ENSMUSG00000030409.17	ENSMUST00000108474.2	2591	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGCGCAATATCTCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	18817865	18827746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_18818080_18819910_18820003_18820256_18820341_18820413_18820510_18820817_18820967_18821164_18821259_18821418_18821626_18821925_18822035_18822112_18822190_18822835_18822922_18824853_18824966_18825605_18825770_18825863_18825962_18826132_18826180_18826467_18826558_18826874
ENSMUST00000108530.2	chr11	-	2389	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108530.2	2389	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGAATAAATTTTTATTC	NA	NA	NA	NA	NA	NA	NA	NA	70860780	70833927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ENSMUST00000108531.8	chr11	-	2453	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108531.8	2453	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCTTTACAATTAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	70860799	70833897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ENSMUST00000108542.8	chr11	-	1080	7	FSM	ENSMUSG00000057054.12	ENSMUST00000108542.8	1080	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCGAGGTAGTGATGG	NA	NA	NA	NA	NA	NA	NA	NA	70590981	70579186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_70579576_70579810_70579971_70580571_70580766_70581008_70581049_70581264_70581379_70586689_70586775_70590883
ENSMUST00000108548.8	chr11	+	1564	12	FSM	ENSMUSG00000060600.16	ENSMUST00000108548.8	1564	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	70548029	70553339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_70548094_70548585_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ENSMUST00000108572.2	chr7	-	2157	2	FSM	ENSMUSG00000051550.11	ENSMUST00000108572.2	2157	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCCGAGTGAGGCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	4999100	4995852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_4997912_4999002
ENSMUST00000108575.9	chr11	-	643	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108575.9	643	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	NA	NA	NA	NA	NA	NA	NA	70128679	70126031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_70126295_70126822_70127038_70128356_70128452_70128609
ENSMUST00000108576.10	chr11	-	576	6	FSM	ENSMUSG00000020831.19	ENSMUST00000108576.10	576	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCCACCTCTGACCCTC	NA	NA	NA	NA	NA	NA	NA	NA	70128630	70126229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_70126295_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609
ENSMUST00000108577.8	chr11	-	659	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108577.8	659	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGTGCTGCCAGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	70128728	70126033	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_70126291_70126849_70127038_70128356_70128452_70128609
ENSMUST00000108578.9	chr11	-	880	6	FSM	ENSMUSG00000020831.19	ENSMUST00000108578.9	880	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	NA	NA	NA	NA	NA	NA	NA	70128740	70126031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609
ENSMUST00000108584.2	chr11	+	776	8	ISM	ENSMUSG00000040950.14	ENSMUST00000041550.12	1586	10	3844	786	3749	-784	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGGTTTCAAGTACGTGT	NA	NA	NA	NA	NA	NA	NA	NA	70024998	70027590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_70025090_70025877_70025989_70026416_70026513_70026595_70026668_70026746_70026819_70027076_70027164_70027266_70027419_70027495
ENSMUST00000108593.8	chr11	+	1627	8	FSM	ENSMUSG00000018559.17	ENSMUST00000108593.8	1627	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCCTAGACCCTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	69871981	69881427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69872412_69875079_69875147_69875241_69875361_69875559_69875632_69879438_69879556_69879653_69879766_69880307_69880393_69880802
ENSMUST00000108594.8	chr11	-	1454	9	FSM	ENSMUSG00000018565.18	ENSMUST00000108594.8	1454	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGGTAATGCTTAAACA	NA	NA	NA	NA	NA	NA	NA	NA	69872078	69859049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824_69870886_69871039_69871389_69872032
ENSMUST00000108607.8	chr11	-	852	7	FSM	ENSMUSG00000078812.11	ENSMUST00000108607.8	852	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGAGTTGGGTACTGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	69812016	69807922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811249_69811988
ENSMUST00000108608.8	chr11	-	775	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108608.8	775	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGCTTGTGGTTTAGGT	NA	NA	NA	NA	NA	NA	NA	NA	69811890	69807912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811867
ENSMUST00000108609.8	chr11	-	849	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108609.8	849	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGAAAGCTGGATTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	69811890	69807856	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811849
ENSMUST00000108612.8	chr11	-	1259	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108612.8	1259	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	69811766	69807545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811626
ENSMUST00000108613.10	chr11	-	1343	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	69812212	69807545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
ENSMUST00000108625.8	chr7	+	914	4	FSM	ENSMUSG00000006333.15	ENSMUST00000108625.8	914	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTTTTCCAGCTGAAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	3707050	3709856	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709649
ENSMUST00000108627.4	chr7	+	1319	4	FSM	ENSMUSG00000035585.17	ENSMUST00000108627.4	1319	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTGTATTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	3697521	3704003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUST00000108630.8	chr7	+	1449	5	FSM	ENSMUSG00000035585.17	ENSMUST00000108630.8	1779	5	0	330	0	-21	multi-exon	FALSE	canonical	NA	NA	NA	NA	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGGCCAGCCTGCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	3696373	3703693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUST00000108633.9	chr11	+	1690	8	FSM	ENSMUSG00000019461.13	ENSMUST00000108633.9	2785	8	0	1095	0	-73	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTCCTTCCCCTACTGTA	NA	NA	NA	NA	NA	NA	NA	NA	69737442	69741789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69737518_69737733_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
ENSMUST00000108636.2	chr7	+	1798	13	FSM	ENSMUSG00000008373.17	ENSMUST00000108636.2	1798	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGGTGTGAGTGATTAT	NA	NA	NA	NA	NA	NA	NA	NA	3633555	3644228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641647_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
ENSMUST00000108656.9	chr11	+	968	6	FSM	ENSMUSG00000069835.11	ENSMUST00000108656.9	968	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGCAGCCATTTTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	69512849	69514696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69513159_69513318_69513371_69513532_69513617_69513685_69513788_69513937_69513979_69514316
ENSMUST00000108657.4	chr11	+	1822	11	FSM	ENSMUSG00000059552.14	ENSMUST00000108657.4	1822	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	69471230	69482699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
ENSMUST00000108662.2	chr11	+	635	4	FSM	ENSMUSG00000049299.15	ENSMUST00000108662.2	635	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	69214982	69216619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69215083_69215220_69215292_69215679_69215789_69216264
ENSMUST00000108672.2	chr11	-	1653	8	FSM	ENSMUSG00000018736.15	ENSMUST00000108672.2	1653	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	68743867	68720143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
ENSMUST00000108675.2	chr11	+	1497	3	FSM	ENSMUSG00000020903.14	ENSMUST00000108675.2	1497	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAATGGGGGCCTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	67857305	67865417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_67857344_67860597_67860698_67864058
ENSMUST00000108697.8	chr11	+	2612	24	FSM	ENSMUSG00000020549.15	ENSMUST00000108697.8	2612	24	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGAGTCAGCCTGCAGTA	NA	NA	NA	NA	NA	NA	NA	NA	64869896	64892154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883267_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820
ENSMUST00000108700.2	chr11	+	733	4	FSM	ENSMUSG00000018217.13	ENSMUST00000108700.2	733	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGATTGCTGTTGATTGAA	NA	NA	NA	NA	NA	NA	NA	NA	63023893	63049392	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_63024071_63025246_63025347_63041944_63042086_63049077
ENSMUST00000108702.8	chr11	+	894	5	FSM	ENSMUSG00000018217.13	ENSMUST00000108702.8	1822	5	0	928	0	52	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATAACACTTTTTACAT	NA	NA	NA	NA	NA	NA	NA	NA	63019807	63049444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_63019977_63023953_63024071_63025246_63025347_63041944_63042086_63049077
ENSMUST00000108711.8	chr11	-	4287	10	FSM	ENSMUSG00000001036.18	ENSMUST00000108711.8	4287	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	61470495	61408074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424414_61424508_61426096_61426210_61436975_61437738_61438695_61438810_61470392
ENSMUST00000108713.8	chr11	-	4207	9	FSM	ENSMUSG00000001036.18	ENSMUST00000108713.8	4207	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	61470511	61408074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975_61437738_61470392
ENSMUST00000108716.8	chr11	+	1721	11	FSM	ENSMUSG00000019102.11	ENSMUST00000108716.8	1721	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATGCAATGCTTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	61099446	61109247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_61099608_61103052_61103220_61104276_61104509_61105010_61105097_61105375_61105585_61106315_61106434_61107104_61107247_61107906_61108074_61108488_61108589_61108816_61108948_61109039
ENSMUST00000108721.9	chr11	-	1813	8	FSM	ENSMUSG00000042709.16	ENSMUST00000108721.9	1813	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGGTCTAAGCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	60307877	60291451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307576
ENSMUST00000108785.2	chr11	+	792	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108785.2	792	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGACTTTTGGGGTTGACT	NA	NA	NA	NA	NA	NA	NA	NA	59093330	59096828	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_59093486_59095000_59095082_59095381_59095584_59096474
ENSMUST00000108785.2-0	chr11	+	645	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108785.2	792	4	33	114	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	59093363	59096714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_59093486_59095000_59095082_59095381_59095584_59096474
ENSMUST00000108787.9	chr11	+	718	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108787.9	718	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	59093314	59096714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_59093486_59094997_59095082_59095360_59095584_59096474
ENSMUST00000108787.9-0	chr11	+	578	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108787.9	718	4	49	91	0	-91	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAAATAAGTCTGTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	59093363	59096623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_59093486_59094997_59095082_59095360_59095584_59096474
ENSMUST00000108796.2	chr2	+	934	5	FSM	ENSMUSG00000000826.17	ENSMUST00000108796.2	934	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCTGTTTTATCCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	181162739	181191383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_181162852_181188163_181188282_181189132_181189347_181190462_181190635_181191065
ENSMUST00000108800.8	chr2	+	1244	6	FSM	ENSMUSG00000000827.19	ENSMUST00000108800.8	3475	6	44	2187	0	388	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTAGCCTCATTGTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	181139023	181157568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181154831_181154881_181156872
ENSMUST00000108808.8	chr2	-	1133	8	FSM	ENSMUSG00000038671.16	ENSMUST00000108808.8	1133	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAAGGGTGTGTGGGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	181007144	181000892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007005
ENSMUST00000108841.2	chr2	+	689	5	FSM	ENSMUSG00000016344.15	ENSMUST00000108841.2	689	5	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	180829128	180830297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_180829248_180829457_180829530_180829601_180829680_180829796_180829894_180829974
ENSMUST00000108858.8	chr11	-	2115	10	FSM	ENSMUSG00000018593.14	ENSMUST00000108858.8	2115	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGTCCCGGGTGATGG	NA	NA	NA	NA	NA	NA	NA	NA	55310724	55285325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298103_55300753_55300824_55310613
ENSMUST00000108883.10	chr11	-	2489	26	FSM	ENSMUSG00000018340.14	ENSMUST00000108883.10	2489	26	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	54924271	54869933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
ENSMUST00000108901.8	chr2	+	1168	7	FSM	ENSMUSG00000039069.20	ENSMUST00000108901.8	1444	7	0	276	0	-276	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCAGGCCCGCCTCGGAC	NA	NA	NA	NA	NA	NA	NA	NA	179713585	179727419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_179713680_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
ENSMUST00000108920.10	chr11	+	1100	10	FSM	ENSMUSG00000018899.18	ENSMUST00000108920.10	2136	10	91	945	54	-945	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACAGCCTGCTGGGCAAC	NA	NA	NA	NA	NA	NA	NA	NA	53660931	53667204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_53661105_53662109_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
ENSMUST00000108923.2	chr2	-	1372	3	FSM	ENSMUSG00000078861.9	ENSMUST00000108923.2	1372	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAATTTTAAAAGAATTCA	NA	NA	NA	NA	NA	NA	NA	NA	177720269	177710282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_177711409_177711615_177711743_177720150
ENSMUST00000108928.2	chr2	-	767	4	FSM	ENSMUSG00000078862.11	ENSMUST00000108928.2	767	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTCAGCTGTGTGAATA	NA	NA	NA	NA	NA	NA	NA	NA	177599032	177589470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_177590024_177590229_177590357_177595474_177595530_177599000
ENSMUST00000108961.4	chr2	-	417	3	FSM	ENSMUSG00000078895.5	ENSMUST00000108961.4	417	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTTTATATATATTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	176061287	176059430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_176059660_176060906_176060968_176061160
ENSMUST00000108980.9	chr2	+	1167	4	FSM	ENSMUSG00000078878.10	ENSMUST00000108980.9	1167	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGTGCAAACACTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	176400147	176411996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_176400218_176403673_176403729_176410749_176410877_176411081
ENSMUST00000108995.9	chr2	+	643	4	FSM	ENSMUSG00000089951.9	ENSMUST00000108995.9	643	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGAAGGAATAGAAACCCT	NA	NA	NA	NA	NA	NA	NA	NA	176115386	176127554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_176115528_176123621_176123749_176123953_176124015_176127240
ENSMUST00000109007.8	chr2	+	446	4	FSM	ENSMUSG00000078886.13	ENSMUST00000109007.8	1621	4	0	1175	0	-1175	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAGTGATGGATGTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	175757123	175768253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_175757228_175760682_175760738_175767761_175767889_175768093
ENSMUST00000109011.8	chr2	+	1445	4	FSM	ENSMUSG00000078887.11	ENSMUST00000109011.8	1445	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACATTAGATTGCTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	175661011	175671449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_175661175_175664841_175664897_175670021_175670149_175670349
ENSMUST00000109021.4	chr11	-	405	3	FSM	ENSMUSG00000044894.15	ENSMUST00000109021.4	405	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	53321654	53319779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_53319978_53321362_53321530_53321614
ENSMUST00000109059.8	chr2	-	703	3	FSM	ENSMUSG00000090093.9	ENSMUST00000109059.8	703	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTGGTAAAGCCTTAAC	NA	NA	NA	NA	NA	NA	NA	NA	174983792	174974274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_174974783_174974988_174975116_174983724
ENSMUST00000109072.2	chr11	+	1455	6	FSM	ENSMUSG00000036309.15	ENSMUST00000109072.2	1754	6	0	299	0	224	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTTTGAATATGTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	52123015	52137386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_52123440_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
ENSMUST00000109078.8	chr11	+	1481	9	FSM	ENSMUSG00000020389.20	ENSMUST00000109078.8	2216	9	124	611	0	-292	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCAACCTGACAAGCAGTA	NA	NA	NA	NA	NA	NA	NA	NA	51895175	51918099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_51895338_51895736_51895920_51901957_51902153_51909103_51909283_51910556_51910670_51913564_51913705_51916665_51916755_51917585_51917746_51917839
ENSMUST00000109084.8	chr2	+	1695	11	FSM	ENSMUSG00000027523.21	ENSMUST00000109084.8	1695	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	NA	NA	NA	NA	NA	NA	NA	174171889	174188537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_174172228_174176004_174176078_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ENSMUST00000109085.8	chr2	+	1789	11	FSM	ENSMUSG00000027523.21	ENSMUST00000109085.8	1789	11	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	NA	NA	NA	NA	NA	NA	NA	174171798	174188537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_174172228_174176004_174176078_174183442_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ENSMUST00000109087.8	chr2	+	1716	12	FSM	ENSMUSG00000027523.21	ENSMUST00000109087.8	1716	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATCAATAAAAATTAA	NA	NA	NA	NA	NA	NA	NA	NA	174171881	174188505	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_174172228_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ENSMUST00000109087.8-0	chr2	+	1570	12	FSM	ENSMUSG00000027523.21	ENSMUST00000109087.8	1716	12	8	138	0	72	multi-exon	FALSE	canonical	NA	NA	NA	NA	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGCGGCCTACAGAAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	174171889	174188367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_174172228_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ENSMUST00000109113.8	chr11	+	1627	11	FSM	ENSMUSG00000020385.17	ENSMUST00000109113.8	1627	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTGATTGAGTATTCT	NA	NA	NA	NA	NA	NA	NA	NA	51154012	51172593	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_51154097_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUST00000109139.8	chr2	-	1905	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109139.8	1905	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGAGTACGTGGGTAATC	NA	NA	NA	NA	NA	NA	NA	NA	172212426	172198115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212314
ENSMUST00000109140.10	chr2	-	1862	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109140.10	1862	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGTGGGTAATCATTTGA	NA	NA	NA	NA	NA	NA	NA	NA	172212455	172198109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212392
ENSMUST00000109142.8	chr11	+	1989	15	FSM	ENSMUSG00000007850.17	ENSMUST00000109142.8	2427	15	0	438	0	-434	multi-exon	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACTTAATTCCTAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	50267816	50276917	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_50267975_50268140_50268268_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
ENSMUST00000109166.8	chr1	+	1272	10	FSM	ENSMUSG00000042901.11	ENSMUST00000109166.8	4279	10	356	2651	0	-784	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCACTTTTCTATTAATT	NA	NA	NA	NA	NA	NA	NA	NA	183078948	183103680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_183079173_183085612_183085683_183087358_183087413_183087819_183087875_183094595_183094660_183094913_183095018_183097514_183097638_183099746_183099870_183103138_183103257_183103343
ENSMUST00000109187.3	chr13	-	630	1	FSM	ENSMUSG00000078915.3	ENSMUST00000109187.3	630	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCATCAGCCTGCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	45232603	45231973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_45232000_45232600
ENSMUST00000109207.10	chr2	-	2041	4	FSM	ENSMUSG00000078923.11	ENSMUST00000109207.10	2041	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCAGGCTGTGCCCTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	167474015	167449557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167473859
ENSMUST00000109214.8	chr2	+	1531	8	FSM	ENSMUSG00000006418.18	ENSMUST00000109214.8	3001	8	0	1470	0	-1470	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGGTGTTGCAGCGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	167334564	167356616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_167335264_167341730_167341886_167345356_167345522_167348966_167349118_167352795_167352903_167353131_167353247_167354436_167354545_167356585
ENSMUST00000109232.4	chr11	+	1486	3	FSM	ENSMUSG00000020397.16	ENSMUST00000109232.4	2547	3	31	1030	31	164	multi-exon	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTATTCTCCATAGAATA	NA	NA	NA	NA	NA	NA	NA	NA	46327831	46332518	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_46328019_46330632_46330803_46331389
ENSMUST00000109256.11	chr15	+	1154	8	FSM	ENSMUSG00000036167.17	ENSMUST00000109256.11	1154	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTAAAGTATCTTAATTA	NA	NA	NA	NA	NA	NA	NA	NA	93296230	93387189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
ENSMUST00000109315.5	chr13	-	4162	13	FSM	ENSMUSG00000021710.12	ENSMUST00000109315.5	4162	13	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGAGCTCACAGTACTT	NA	NA	NA	NA	NA	NA	NA	NA	104246122	104159564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_104161589_104172094_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
ENSMUST00000109315.5-0	chr13	-	3600	13	FSM	ENSMUSG00000021710.12	ENSMUST00000109315.5	4162	13	28	534	0	-534	multi-exon	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATCGGACTTTCCACAG	NA	NA	NA	NA	NA	NA	NA	NA	104246094	104160098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_104161589_104172094_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
ENSMUST00000109350.9	chr2	+	1055	4	FSM	ENSMUSG00000017734.16	ENSMUST00000109350.9	1055	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACCTCATTCTTCATAT	NA	NA	NA	NA	NA	NA	NA	NA	164328025	164332687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_164328164_164330161_164330309_164330487_164330626_164332055
ENSMUST00000109366.8	chr11	+	3084	13	FSM	ENSMUSG00000020271.18	ENSMUST00000109366.8	3821	13	60	677	38	-677	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGCCCCTCCCAGTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	32592783	32695892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_32592936_32658187_32658251_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
ENSMUST00000109392.9	chr8	+	1182	6	FSM	ENSMUSG00000031885.15	ENSMUST00000109392.9	2891	6	55	1654	0	-1654	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTCAGACGAGTTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	105897375	105942959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929211_105942535
ENSMUST00000109416.3	chr2	+	1094	5	FSM	ENSMUSG00000078949.3	ENSMUST00000109416.3	1094	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTGACATCTTTGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	163334237	163344532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_163334673_163337608_163337728_163340214_163340348_163341734_163341851_163344241
ENSMUST00000109418.2	chr2	-	1598	2	FSM	ENSMUSG00000048486.7	ENSMUST00000109418.2	3967	2	55	2314	55	-2314	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTATGGTTTTAATCATTAC	NA	NA	NA	NA	NA	NA	NA	NA	163314494	163310612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_163312039_163314322
ENSMUST00000109430.2	chr11	+	1008	2	FSM	ENSMUSG00000043999.7	ENSMUST00000109430.2	2926	2	58	1860	2	-850	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAAATGGAGATCCCATCC	NA	NA	NA	NA	NA	NA	NA	NA	30835415	30841869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_30835543_30840988
ENSMUST00000109444.3	chr13	+	5285	17	FSM	ENSMUSG00000021669.16	ENSMUST00000109444.3	5285	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGATTTGTTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	96679242	96776675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_96679768_96685704_96685840_96708418_96708536_96734712_96734821_96735897_96736037_96739580_96739665_96746281_96746440_96748768_96748862_96751281_96751369_96752964_96753058_96761202_96761299_96765520_96765654_96767268_96767340_96770580_96770710_96771361_96771492_96772257_96772395_96773625
ENSMUST00000109468.3	chr2	+	2584	21	FSM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	92	1180	92	-1180	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGTGGTTTGGGGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	160487899	160563504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491_160545615_160546702_160546891_160547096_160547242_160554564_160554709_160556000_160556187_160556965_160557035_160557632_160557748_160559306_160559435_160562498_160562594_160562846_160562997_160563371
ENSMUST00000109504.8	chr11	-	1642	12	FSM	ENSMUSG00000064090.15	ENSMUST00000109504.8	1642	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2394	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAGAGAAAGAGAGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	26541729	26421321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586
ENSMUST00000109521.4	chr8	+	1580	9	FSM	ENSMUSG00000031783.11	ENSMUST00000109521.4	1580	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTGCTTTAATTGCATT	NA	NA	NA	NA	NA	NA	NA	NA	95584077	95590870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
ENSMUST00000109522.2	chr2	-	3765	7	FSM	ENSMUSG00000027650.13	ENSMUST00000109522.2	3765	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTCTTGATGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	157851282	157823731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_157824381_157834887_157834976_157835273_157835479_157837300_157837442_157838996_157839146_157842539_157842729_157848938
ENSMUST00000109531.8	chr2	+	3586	12	FSM	ENSMUSG00000027646.16	ENSMUST00000109531.8	3586	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTCAGCAGTTTATTG	NA	NA	NA	NA	NA	NA	NA	NA	157297590	157313758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_157297688_157299000_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
ENSMUST00000109542.3	chr5	+	1158	1	FSM	ENSMUSG00000061331.6	ENSMUST00000109542.3	1158	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCATCAACAAACCTAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	127954396	127955554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_127954400_127955600
ENSMUST00000109553.10	chr15	+	1811	4	FSM	ENSMUSG00000022389.16	ENSMUST00000109553.10	4403	4	316	2276	316	-2111	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTTTAGGAAACTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	81686937	81708788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_81687088_81699144_81699463_81705399_81705621_81707666
ENSMUST00000109566.9	chr2	+	1298	7	FSM	ENSMUSG00000061689.16	ENSMUST00000109566.9	1595	7	17	280	-8	-59	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAGAGAGTGCGGACAGC	NA	NA	NA	NA	NA	NA	NA	NA	156562981	156604764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_156563008_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
ENSMUST00000109598.4	chr2	+	362	3	FSM	ENSMUSG00000067847.14	ENSMUST00000109598.4	362	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTCGTTATATCAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	155986156	155987703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_155986206_155986378_155986510_155987521
ENSMUST00000109600.2	chr2	-	192	3	FSM	ENSMUSG00000027618.18	ENSMUST00000109600.2	709	3	109	408	109	-408	multi-exon	FALSE	canonical	NA	NA	NA	NA	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAACCCTCATTCTCGGAC	NA	NA	NA	NA	NA	NA	NA	NA	155985991	155984114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_155984163_155985286_155985379_155985939
ENSMUST00000109605.5	chr15	+	1386	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	339	0	-27	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	80139723	80141742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_80139887_80140407_80140723_80140834
ENSMUST00000109605.5-1	chr15	+	1347	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	1	377	1	-283	multi-exon	FALSE	canonical	NA	NA	NA	NA	1051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGTCTCCTCGGCCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	80139385	80141365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_80139887_80140407_80140723_80140834
ENSMUST00000109609.9	chr8	-	1171	10	FSM	ENSMUSG00000031667.17	ENSMUST00000109609.9	1171	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTGGCTATCAGTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	91860651	91851096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857777_91860527
ENSMUST00000109620.10	chr15	+	2459	9	FSM	ENSMUSG00000009585.19	ENSMUST00000109620.10	2459	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTGTCTCAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	79776608	79792630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
ENSMUST00000109638.2	chr2	-	1382	2	FSM	ENSMUSG00000027613.16	ENSMUST00000109638.2	1382	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTCCTTATGAAATG	NA	NA	NA	NA	NA	NA	NA	NA	155668583	155667085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_155668131_155668246
ENSMUST00000109641.2	chr11	-	450	4	FSM	ENSMUSG00000078974.11	ENSMUST00000109641.2	450	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCATAACAGACATTTAT	NA	NA	NA	NA	NA	NA	NA	NA	16458069	16451650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16457979
ENSMUST00000109659.9	chr11	-	1954	15	FSM	ENSMUSG00000020182.17	ENSMUST00000109659.9	1954	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTATTGAGTAAGCGTC	NA	NA	NA	NA	NA	NA	NA	NA	11840408	11764102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11840337
ENSMUST00000109664.2	chr11	-	2807	3	FSM	ENSMUSG00000035455.13	ENSMUST00000109664.2	2807	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGCAAGATGTAATCTT	NA	NA	NA	NA	NA	NA	NA	NA	11758932	11750551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_11753064_11755958_11756216_11758894
ENSMUST00000109682.9	chr2	+	414	4	FSM	ENSMUSG00000047459.15	ENSMUST00000109682.9	684	4	73	197	0	-55	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGGGTCGCTCTGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	155078527	155092000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_155078538_155084650_155084727_155089690_155089859_155091840
ENSMUST00000109701.10	chr2	+	1428	8	FSM	ENSMUSG00000027593.16	ENSMUST00000109701.10	1709	8	61	220	0	-219	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGCCAGTGAGTGCTACA	NA	NA	NA	NA	NA	NA	NA	NA	154633076	154708945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_154633469_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ENSMUST00000109721.3	chr11	+	1551	9	FSM	ENSMUSG00000000378.16	ENSMUST00000109721.3	1551	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTCCAGTTGTCAAGCAT	NA	NA	NA	NA	NA	NA	NA	NA	6511229	6546742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_6511242_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
ENSMUST00000109733.8	chr8	+	1590	6	FSM	ENSMUSG00000005161.16	ENSMUST00000109733.8	1590	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCTAGGCTCTGACCC	NA	NA	NA	NA	NA	NA	NA	NA	85696395	85701463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_85696638_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ENSMUST00000109734.8	chr8	+	715	6	FSM	ENSMUSG00000005161.16	ENSMUST00000109734.8	1612	6	107	790	-73	-265	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGGATGACAGCAAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	85696322	85700673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_85696392_85696780_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ENSMUST00000109742.11	chr13	-	2416	4	FSM	ENSMUSG00000058883.17	ENSMUST00000109742.11	2416	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCAGTGTCGTGTTTAGT	NA	NA	NA	NA	NA	NA	NA	NA	67229576	67217462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_67219593_67222149_67222246_67222896_67223024_67229513
ENSMUST00000109743.5	chr13	-	2536	4	FSM	ENSMUSG00000058883.17	ENSMUST00000109743.5	2536	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCGTCAGTGTCGTGTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	67246040	67217463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_67219593_67222149_67222246_67222896_67223024_67245856
ENSMUST00000109775.4	chr15	+	1573	3	FSM	ENSMUSG00000068246.7	ENSMUST00000109775.4	1573	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTGTCTGACTCGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	77613293	77620582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_77613447_77618664_77618791_77619288
ENSMUST00000109805.8	chr11	-	2635	3	NNC	ENSMUSG00000053838.15	novel	3927	6	NA	NA	81006	-295	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCTGGTTCTGTCTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	6069409	6055985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_6058356_6063242_6063432_6069333
ENSMUST00000109816.8	chr2	+	3483	18	FSM	ENSMUSG00000027469.17	ENSMUST00000109816.8	3483	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCTCTTGTTGTCCTAG	NA	NA	NA	NA	NA	NA	NA	NA	152689897	152736574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ENSMUST00000109820.5	chr2	-	2568	3	FSM	ENSMUSG00000007659.19	ENSMUST00000109820.5	2568	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACCACAGCCTTGGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	152672586	152622591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_152624203_152671346_152672023_152672305
ENSMUST00000109824.2	chr2	+	1160	1	FSM	ENSMUSG00000042745.10	ENSMUST00000109824.2	1160	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGCTGTGACTTCTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	152578170	152579330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_152578200_152579300
ENSMUST00000109825.8	chr2	+	1063	4	FSM	ENSMUSG00000019188.17	ENSMUST00000109825.8	1063	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAGGCTACGCCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	152511407	152528621	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017
ENSMUST00000109845.8	chr11	+	2001	13	FSM	ENSMUSG00000020476.15	ENSMUST00000109845.8	2001	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGCTCAGCCCATCCAT	NA	NA	NA	NA	NA	NA	NA	NA	5738487	5750629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747286_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
ENSMUST00000109847.9	chr2	-	2384	12	FSM	ENSMUSG00000027466.16	ENSMUST00000109847.9	2384	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	152174332	152158253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
ENSMUST00000109863.2	chr2	-	1284	2	FSM	ENSMUSG00000027459.17	ENSMUST00000109863.2	1284	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTGTGCTTCTGCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	151815314	151811656	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_151812845_151815218
ENSMUST00000109864.8	chr2	-	1591	2	FSM	ENSMUSG00000027459.17	ENSMUST00000109864.8	1591	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGACTCTTCTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	151815886	151811317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_151812845_151815822
ENSMUST00000109868.4	chr13	+	515	4	FSM	ENSMUSG00000050002.15	ENSMUST00000109868.4	1462	4	29	918	29	-171	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTCGTTCATAGCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	58305496	58311589	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_58305551_58307690_58307722_58307965_58308053_58311246
ENSMUST00000109869.2	chr2	-	1384	8	FSM	ENSMUSG00000032869.16	ENSMUST00000109869.2	1384	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTCCACGCTCCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	151586106	151560184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151576141_151576225_151577393_151577547_151582930_151583075_151585922
ENSMUST00000109878.9	chr11	+	1611	8	FSM	ENSMUSG00000034175.14	ENSMUST00000109878.9	1611	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	5050156	5056091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_5050227_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUST00000109905.5	chr13	+	1420	5	FSM	ENSMUSG00000058569.9	ENSMUST00000109905.5	1420	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	903	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTCGTGGTTACTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	55740981	55745510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_55741171_55741313_55741415_55742517_55742644_55743280_55743428_55744653
ENSMUST00000109950.5	chr8	+	1024	7	FSM	ENSMUSG00000031622.17	ENSMUST00000109950.5	1024	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	533	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGTTATGTGCAGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	73449912	73466534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996_73466117_73466357
ENSMUST00000109961.8	chr2	+	624	3	FSM	ENSMUSG00000036992.11	ENSMUST00000109961.8	1116	3	25	467	0	-467	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTAGACTGCCAGCCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	148514545	148517480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_148514756_148516383_148516519_148517201
ENSMUST00000109966.8	chr15	+	763	4	FSM	ENSMUSG00000034429.16	ENSMUST00000109966.8	1803	4	56	984	0	-969	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGAGTGCCTCGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	75841027	75846614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_75841254_75844930_75845058_75845390_75845505_75846318
ENSMUST00000109974.2	chr8	-	1371	7	FSM	ENSMUSG00000019732.15	ENSMUST00000109974.2	1371	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAATTTTTAAAAATAT	NA	NA	NA	NA	NA	NA	NA	NA	73189000	73178026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_73178600_73179610_73179704_73181005_73181138_73181913_73182010_73185216_73185406_73188633_73188729_73188807
ENSMUST00000109990.8	chr11	-	1914	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109990.8	1914	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	3881960	3867191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881926
ENSMUST00000109991.8	chr11	-	1943	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109991.8	1943	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	3882078	3867191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881585_3882012
ENSMUST00000109992.8	chr11	-	1945	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109992.8	1945	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	3881789	3867191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881724
ENSMUST00000109993.9	chr11	-	2027	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109993.9	2027	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	3882159	3867191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3882012
ENSMUST00000109995.2	chr11	-	3063	2	FSM	ENSMUSG00000048807.3	ENSMUST00000109995.2	3063	2	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTCTGTCATTCCTTGGG	NA	NA	NA	NA	NA	NA	NA	NA	3864664	3857020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3857985_3862565
ENSMUST00000110001.4	chr12	-	3063	9	FSM	ENSMUSG00000041645.15	ENSMUST00000110001.4	3063	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCTGAGGGTGTTGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	103392039	103374241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103391784
ENSMUST00000110017.3	chr2	+	1632	5	FSM	ENSMUSG00000027427.14	ENSMUST00000110017.3	1632	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAATAATATAACC	NA	NA	NA	NA	NA	NA	NA	NA	144369667	144377093	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_144369846_144370622_144370741_144374273_144374342_144375077_144375146_144375893
ENSMUST00000110028.8	chr2	+	1695	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110028.8	2308	5	0	613	0	-613	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGCAAACCTCTGTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	144112582	144121823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_144112935_144113834_144114405_144118234_144118452_144120913_144121047_144121400
ENSMUST00000110051.2	chr8	+	1508	3	FSM	ENSMUSG00000002396.9	ENSMUST00000110051.2	2179	3	41	630	0	63	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCACTGCTGGGCTACTC	NA	NA	NA	NA	NA	NA	NA	NA	71823982	71826396	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71824630_71825392_71825447_71825589
ENSMUST00000110052.2	chr8	+	5285	2	FSM	ENSMUSG00000002396.9	ENSMUST00000110052.2	5285	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGATATATGCTTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	71823989	71832005	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71824630_71827360
ENSMUST00000110054.8	chr8	+	973	9	FSM	ENSMUSG00000002395.15	ENSMUST00000110054.8	973	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	NA	NA	NA	NA	NA	NA	NA	71819585	71822376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71819723_71819878_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ENSMUST00000110082.11	chr12	+	632	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	94	3389	0	-364	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGACCTACTTTCAACTA	NA	NA	NA	NA	NA	NA	NA	NA	100165787	100172684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
ENSMUST00000110089.9	chr2	-	3178	6	FSM	ENSMUSG00000027274.17	ENSMUST00000110089.9	3178	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTATACAATCCTTACTA	NA	NA	NA	NA	NA	NA	NA	NA	136733309	136715699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136732962
ENSMUST00000110093.9	chr8	+	957	5	FSM	ENSMUSG00000031840.15	ENSMUST00000110093.9	1442	5	32	453	0	-377	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGGCCGTGGTGTATTGTG	NA	NA	NA	NA	NA	NA	NA	NA	71207359	71210870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71207518_71208502_71208731_71209093_71209213_71209783_71209909_71210543
ENSMUST00000110103.2	chr8	-	1380	3	FSM	ENSMUSG00000038508.8	ENSMUST00000110103.2	1380	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	NA	NA	NA	NA	NA	NA	NA	NA	71085106	71082043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_71082825_71083982_71084275_71084799
ENSMUST00000110104.10	chr12	+	2398	15	FSM	ENSMUSG00000021012.17	ENSMUST00000110104.10	3146	15	19	729	0	177	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTAGTTTAAATTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	98713241	98753283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_98713418_98713738_98713782_98719036_98719152_98722443_98722485_98723267_98723464_98724770_98725201_98725977_98726139_98726568_98726670_98730081_98730238_98740503_98740579_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
ENSMUST00000110117.2	chr12	+	1299	2	FSM	ENSMUSG00000047414.7	ENSMUST00000110117.2	3223	2	0	1924	0	-1924	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGGATGAGTTCCCCAT	NA	NA	NA	NA	NA	NA	NA	NA	95662130	95745957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_95662753_95745280
ENSMUST00000110128.5	chr13	-	1305	10	FSM	ENSMUSG00000057531.15	ENSMUST00000110128.5	1305	10	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAACACTGTGCAGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	45155572	45075560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_45075931_45076624_45076769_45084471_45084640_45084722_45084734_45123521_45123655_45136216_45136350_45139510_45139572_45145494_45145546_45147160_45147215_45155392
ENSMUST00000110139.2	chr8	+	679	6	FSM	ENSMUSG00000002345.19	ENSMUST00000110139.2	679	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGCCATGTGTGATGCA	NA	NA	NA	NA	NA	NA	NA	NA	70592926	70599969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_70593007_70594513_70594627_70595123_70595189_70597673_70597785_70598460_70598541_70599739
ENSMUST00000110145.12	chr12	+	1206	4	FSM	ENSMUSG00000096276.10	ENSMUST00000110145.12	1894	4	51	637	0	-281	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGGACTTTCAGTTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	87921248	87926816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_87921353_87924570_87924882_87925394_87925971_87926601
ENSMUST00000110147.3	chr12	+	1766	2	FSM	ENSMUSG00000072905.6	ENSMUST00000110147.3	1766	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACATTTTTTTCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	87840841	87844629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_87841033_87843054
ENSMUST00000110158.8	chr2	+	1247	4	FSM	ENSMUSG00000058793.15	ENSMUST00000110158.8	1247	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTCTGAGCCCTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	132105067	132138113	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450
ENSMUST00000110163.8	chr2	-	1551	4	FSM	ENSMUSG00000027341.11	ENSMUST00000110163.8	1551	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	NA	NA	NA	NA	NA	NA	NA	NA	132089689	132081411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089515
ENSMUST00000110164.8	chr2	-	697	3	FSM	ENSMUSG00000027341.11	ENSMUST00000110164.8	2957	3	1599	661	1599	-659	multi-exon	FALSE	canonical	NA	NA	NA	NA	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTCTGCTTGGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	132087975	132082072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_132082547_132085938_132086062_132087875
ENSMUST00000110167.5	chr8	-	1251	5	FSM	ENSMUSG00000036199.10	ENSMUST00000110167.5	1251	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2688	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGACTCTATAGTGACTC	NA	NA	NA	NA	NA	NA	NA	NA	70355208	70346829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_70347061_70347153_70347226_70347891_70347971_70354191_70354383_70354530
ENSMUST00000110206.2	chr2	+	703	3	FSM	ENSMUSG00000068264.12	ENSMUST00000110206.2	703	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCGCTGACCCCTCACCAG	NA	NA	NA	NA	NA	NA	NA	NA	131052523	131054784	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_131052602_131053182_131053394_131054370
ENSMUST00000110216.2	chr8	+	1323	3	FSM	ENSMUSG00000059897.6	ENSMUST00000110216.2	1323	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTAAAGCCTTTGCAAT	NA	NA	NA	NA	NA	NA	NA	NA	69678994	69681632	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_69679122_69679323_69679382_69680494
ENSMUST00000110220.9	chr12	+	2655	13	FSM	ENSMUSG00000012609.20	ENSMUST00000110220.9	2655	13	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTCTTGTTATTTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	85871480	85931212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85892020_85892128_85896024_85896156_85904153_85904237_85910337_85910408_85911298_85911384_85923264_85923367_85925160_85925253_85926141_85926250_85930077
ENSMUST00000110251.9	chr13	-	1395	10	FSM	ENSMUSG00000021417.16	ENSMUST00000110251.9	1395	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCAAGCCTTAAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	35178115	35161739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177996
ENSMUST00000110267.9	chr15	-	3127	8	FSM	ENSMUSG00000022340.16	ENSMUST00000110267.9	3127	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTCTCCTATAATTAT	NA	NA	NA	NA	NA	NA	NA	NA	44615854	44535251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_44537045_44538761_44538912_44540930_44541135_44546743_44546847_44582183_44582382_44609641_44609859_44611704_44611795_44615482
ENSMUST00000110269.8	chr15	-	1625	6	FSM	ENSMUSG00000022340.16	ENSMUST00000110269.8	2920	6	254	1041	35	-596	multi-exon	FALSE	canonical	NA	NA	NA	NA	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTAACTCGGCCATCCTT	NA	NA	NA	NA	NA	NA	NA	NA	44651205	44536295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_44537045_44538761_44538912_44540930_44541135_44546743_44546847_44582183_44582382_44650984
ENSMUST00000110276.8	chr12	+	1776	13	FSM	ENSMUSG00000021235.14	ENSMUST00000110276.8	1776	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTCTTTTCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	84408430	84420566	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_84408594_84408726_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
ENSMUST00000110293.9	chr13	+	1093	7	FSM	ENSMUSG00000042842.12	ENSMUST00000110293.9	2193	7	235	865	-59	-860	multi-exon	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGCACAGAGGCTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	33149426	33162185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_33149527_33152482_33152658_33155453_33155607_33156229_33156348_33158879_33159023_33161507_33161664_33161937
ENSMUST00000110319.3	chr2	+	1484	4	FSM	ENSMUSG00000042851.18	ENSMUST00000110319.3	1484	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGTTTACTGGAGCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	128809328	128836050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_128809757_128833010_128833192_128835078_128835202_128835298
ENSMUST00000110324.8	chr2	+	1577	9	FSM	ENSMUSG00000027386.10	ENSMUST00000110324.8	3228	9	0	1651	0	-267	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGGGATCGTGGGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	128704900	128737303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_128705220_128705851_128706068_128719279_128719440_128722175_128722347_128731620_128731747_128734362_128734504_128735686_128735825_128736685_128736825_128737136
ENSMUST00000110340.9	chr12	-	668	4	FSM	ENSMUSG00000091803.8	ENSMUST00000110340.9	668	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGTTCTCAGTGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	81531884	81405799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81531670
ENSMUST00000110346.9	chr8	-	2267	10	FSM	ENSMUSG00000031561.17	ENSMUST00000110346.9	2267	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCATTTTGGTCAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	49008348	48788227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_48788810_48793988_48794190_48795291_48795487_48795649_48795752_48796266_48796478_48802233_48802449_48820345_48820469_48848470_48848710_48870042_48870281_49008187
ENSMUST00000110351.8	chr12	+	1498	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110351.8	1498	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	80992305	80997277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
ENSMUST00000110352.10	chr12	+	1491	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110352.10	1491	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	80992305	80997277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_80992443_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
ENSMUST00000110354.8	chr12	+	1489	9	FSM	ENSMUSG00000021134.18	ENSMUST00000110354.8	1489	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	80992293	80997277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_80992355_80992375_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
ENSMUST00000110356.3	chr12	+	1568	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110356.3	1568	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	80992358	80997277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
ENSMUST00000110362.4	chr15	-	1393	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	160	569	160	-569	multi-exon	FALSE	canonical	NA	NA	NA	NA	822	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAACACCCTGTGGATGC	NA	NA	NA	NA	NA	NA	NA	NA	36793921	36772516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
ENSMUST00000110371.8	chr8	+	2100	20	FSM	ENSMUSG00000018796.14	ENSMUST00000110371.8	2100	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTGAGGAAGGATACTTAGA	NA	NA	NA	NA	NA	NA	NA	NA	46945868	46987517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974446_46974525_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376
ENSMUST00000110375.9	chr2	+	2449	8	FSM	ENSMUSG00000027367.17	ENSMUST00000110375.9	3116	8	505	162	0	-162	multi-exon	FALSE	canonical	NA	NA	NA	NA	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTATGTGTGCGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	127112653	127140690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_127112801_127126014_127126224_127126451_127126502_127132691_127132803_127132877_127132961_127134070_127134171_127137403_127137489_127139026
ENSMUST00000110375.9-1	chr2	+	2463	8	FSM	ENSMUSG00000027367.17	ENSMUST00000110375.9	3116	8	0	653	0	-653	multi-exon	FALSE	canonical	NA	NA	NA	NA	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTAGGGATGGGGCTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	127112148	127140199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_127112801_127126014_127126224_127126451_127126502_127132691_127132803_127132877_127132961_127134070_127134171_127137403_127137489_127139026
ENSMUST00000110376.8	chr8	+	2043	6	FSM	ENSMUSG00000031631.16	ENSMUST00000110376.8	2043	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTTTTGATTCTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	46616771	46648623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_46616901_46622595_46623690_46634754_46635024_46644616_46644768_46645621_46645729_46648330
ENSMUST00000110424.9	chr2	-	2613	9	FSM	ENSMUSG00000027361.16	ENSMUST00000110424.9	2613	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCATGCAGACTCATGT	NA	NA	NA	NA	NA	NA	NA	NA	126517422	126470832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_126472303_126481148_126481265_126488482_126488666_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
ENSMUST00000110437.4	chr2	+	1276	4	FSM	ENSMUSG00000023330.13	ENSMUST00000110437.4	1276	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCCCTTACCTTTCGACT	NA	NA	NA	NA	NA	NA	NA	NA	125996460	126007199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_125996781_126000329_126000474_126001689_126001949_126006646
ENSMUST00000110442.2	chr2	+	1764	3	FSM	ENSMUSG00000027208.15	ENSMUST00000110442.2	2287	3	0	523	0	437	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGATGCTTTGTCAGAT	NA	NA	NA	NA	NA	NA	NA	NA	125876892	125931918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_125877921_125930154_125930259_125931286
ENSMUST00000110464.8	chr12	+	1759	6	FSM	ENSMUSG00000021109.14	ENSMUST00000110464.8	1759	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCTCCCAGACAGCCTAA	NA	NA	NA	NA	NA	NA	NA	NA	73954677	73979850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_73955099_73973330_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047
ENSMUST00000110505.8	chr5	-	2698	4	FSM	ENSMUSG00000066551.13	ENSMUST00000110505.8	1720	4	548	-1526	548	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACGTCTTTGTAACTTT	NA	NA	NA	NA	NA	NA	NA	NA	148987562	148983511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397
ENSMUST00000110512.4	chr2	+	751	4	FSM	ENSMUSG00000033213.17	ENSMUST00000110512.4	751	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGATTTGTGCAAGAGATA	NA	NA	NA	NA	NA	NA	NA	NA	122479834	122483005	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_122480054_122480176_122480263_122481135_122481197_122482620
ENSMUST00000110523.2	chr15	+	2088	6	FSM	ENSMUSG00000058914.13	ENSMUST00000110523.2	2088	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTTAAATGTTTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	10952442	10979792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_10952843_10958042_10958155_10960713_10960869_10972066_10972197_10975676_10975777_10978601
ENSMUST00000110551.4	chr2	+	1794	9	FSM	ENSMUSG00000027227.8	ENSMUST00000110551.4	2352	9	0	558	0	-558	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTCTCAGCTACTAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	122065229	122095263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_122065440_122076962_122076997_122079279_122079445_122083667_122083828_122087322_122087442_122089545_122089612_122090660_122090837_122093668_122093791_122094521
ENSMUST00000110557.5	chr5	+	1137	3	FSM	ENSMUSG00000029642.12	ENSMUST00000110557.5	1137	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTCCTCTTTTGGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	147014155	147048171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_147014504_147038038_147038114_147047457
ENSMUST00000110579.10	chr8	+	2496	8	NNC	ENSMUSG00000013878.19	novel	3929	8	NA	NA	73	-1223	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATTAGCTGCCAAGTAA	NA	NA	NA	NA	NA	NA	NA	NA	26609576	26632676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_+_26609629_26610467_26610592_26613874_26614016_26615931_26616008_26619074_26619184_26628732_26628778_26628896_26629008_26630838
ENSMUST00000110586.10	chr2	+	1664	9	FSM	ENSMUSG00000060227.16	ENSMUST00000110586.10	4032	9	160	2208	0	-1869	multi-exon	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGAATAGTTACACAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	121697610	121764478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121763958
ENSMUST00000110594.4	chr13	-	842	5	FSM	ENSMUSG00000079092.5	ENSMUST00000110594.4	842	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAGTCTCAATGGAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	13179968	13170709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_13170997_13171869_13172053_13173165_13173274_13176718_13176895_13179880
ENSMUST00000110620.2	chr12	-	439	2	FSM	ENSMUSG00000049751.7	ENSMUST00000110620.2	757	2	-27	345	0	-335	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAGTGACCCAGTATAAG	NA	NA	NA	NA	NA	NA	NA	NA	69230787	69229849	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_69229940_69230438
ENSMUST00000110621.3	chr12	+	1500	4	FSM	ENSMUSG00000034883.10	ENSMUST00000110621.3	1500	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAATGTCTCAGCAGTTA	NA	NA	NA	NA	NA	NA	NA	NA	69215587	69225783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_69215837_69218635_69218735_69221165_69221888_69225353
ENSMUST00000110658.8	chr2	+	2321	18	FSM	ENSMUSG00000027263.13	ENSMUST00000110658.8	4250	18	72	1857	25	-1856	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATCCCTCTGCTGACCA	NA	NA	NA	NA	NA	NA	NA	NA	121001720	121027394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
ENSMUST00000110690.9	chr15	+	3527	17	FSM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	614	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAATGTGTGTGTCCTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	4055864	4184826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
ENSMUST00000110695.8	chr5	+	669	3	FSM	ENSMUSG00000047843.17	ENSMUST00000110695.8	669	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTAGCTTGTTCTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	144181246	144201205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_144181426_144192619_144192723_144200818
ENSMUST00000110731.4	chr5	+	1829	5	FSM	ENSMUSG00000079111.4	ENSMUST00000110731.4	1829	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5506	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTATGGTCTTTTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	143389592	143407656	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555
ENSMUST00000110784.8	chr5	-	3106	14	FSM	ENSMUSG00000029576.18	ENSMUST00000110784.8	3106	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATAAACTATCTTTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	142495414	142470621	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_142471004_142471167_142471308_142471609_142471747_142472509_142472862_142473201_142473393_142474157_142474309_142479982_142480156_142480490_142480729_142481080_142481194_142483592_142483754_142489667_142489706_142492213_142492844_142493824_142494073_142495262
ENSMUST00000110798.5	chr1	+	1231	1	FSM	ENSMUSG00000079139.5	ENSMUST00000110798.5	1231	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1292	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGTTTACCAAATGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	135159732	135160963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_135159700_135161000
ENSMUST00000110815.9	chr1	+	1785	8	FSM	ENSMUSG00000016494.10	ENSMUST00000110815.9	2554	8	76	693	76	-693	multi-exon	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAAATGCATCCCTTAT	NA	NA	NA	NA	NA	NA	NA	NA	194621258	194642894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_194621353_194630146_194630315_194631612_194631873_194633246_194633328_194640724_194640882_194641117_194641171_194641373_194641539_194642087
ENSMUST00000110824.9	chr12	+	1063	4	FSM	ENSMUSG00000020564.18	ENSMUST00000110824.9	1675	4	63	549	-15	-549	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACACAATGGTTTTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	33197772	33300596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_33197915_33198431_33198501_33267710_33267816_33299849
ENSMUST00000110826.8	chr5	+	606	4	FSM	ENSMUSG00000036639.13	ENSMUST00000110826.8	606	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCAAGCTGTCGGACCAAG	NA	NA	NA	NA	NA	NA	NA	NA	140318149	140323563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_140318229_140320209_140320375_140321067_140321214_140323347
ENSMUST00000110826.8-0	chr5	+	762	4	FSM	ENSMUSG00000036639.13	ENSMUST00000110826.8	606	4	29	-185	0	52	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGGTCGGAGAATGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	140318178	140323748	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_140318229_140320209_140320375_140321067_140321214_140323347
ENSMUST00000110831.4	chr1	+	782	2	FSM	ENSMUSG00000079144.8	ENSMUST00000110831.4	2257	2	6	1469	6	-1467	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGTATTTGGGATACTC	NA	NA	NA	NA	NA	NA	NA	NA	192855893	192857139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_192856089_192856552
ENSMUST00000110833.2	chr2	-	732	3	FSM	ENSMUSG00000039983.14	ENSMUST00000110833.2	732	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCTCTAATCTTCAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	118859858	118852285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_118852707_118857618_118857869_118859797
ENSMUST00000110840.8	chr8	-	2853	5	FSM	ENSMUSG00000038506.14	ENSMUST00000110840.8	2853	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGATGTCCTTTATTCT	NA	NA	NA	NA	NA	NA	NA	NA	13338125	13305962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_13307977_13321589_13321721_13328516_13328686_13330908_13331126_13337803
ENSMUST00000110851.8	chr5	-	3121	7	FSM	ENSMUSG00000053581.14	ENSMUST00000110851.8	3121	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTATTCTAGACAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	139470272	139456970	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_139459310_139459484_139459551_139460607_139460760_139464221_139464354_139467720_139467816_139468456_139468553_139470031
ENSMUST00000110855.8	chr1	+	3509	8	FSM	ENSMUSG00000026623.17	ENSMUST00000110855.8	7233	8	0	3724	0	554	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAGTTAAGTATATGTACA	NA	NA	NA	NA	NA	NA	NA	NA	191449945	191512643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_191450318_191451465_191451731_191481651_191481771_191488043_191488140_191492085_191492360_191495656_191495784_191508434_191508542_191510494
ENSMUST00000110878.2	chr5	+	1180	9	FSM	ENSMUSG00000025858.13	ENSMUST00000110878.2	1180	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTGTCTCTGCTTCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	139239265	139255084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_139239357_139248235_139248315_139248624_139248707_139249233_139249384_139251381_139251521_139252758_139252900_139252981_139253058_139253157_139253231_139254735
ENSMUST00000110891.8	chr1	-	1214	10	FSM	ENSMUSG00000026632.18	ENSMUST00000110891.8	1214	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTATTTTTAAAAAAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	190795101	190778038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_190778534_190781478_190781560_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
ENSMUST00000110893.10	chr1	-	1242	10	FSM	ENSMUSG00000026632.18	ENSMUST00000110893.10	1242	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGATTTGTCTTGGACA	NA	NA	NA	NA	NA	NA	NA	NA	190795129	190778022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_190778518_190781478_190781560_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
ENSMUST00000110936.8	chr5	-	2308	15	FSM	ENSMUSG00000036980.14	ENSMUST00000110936.8	2308	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	NA	NA	NA	NA	NA	NA	NA	NA	138185713	138176878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185652
ENSMUST00000110951.8	chr5	+	1098	10	FSM	ENSMUSG00000019494.15	ENSMUST00000110951.8	1098	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGCCCTTCCAGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	138159361	138162240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_138159453_138159636_138159760_138159935_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161588_138161682_138161770_138161872_138161997
ENSMUST00000110961.9	chr5	+	2310	5	FSM	ENSMUSG00000037017.16	ENSMUST00000110961.9	2310	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTATTTTATTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	138115177	138132527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_138115270_138116097_138116183_138123239_138123953_138124715_138124909_138131300
ENSMUST00000110965.2	chr1	+	1046	8	FSM	ENSMUSG00000026617.17	ENSMUST00000110965.2	1046	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAATACGCTTAAGACTT	NA	NA	NA	NA	NA	NA	NA	NA	185064376	185088978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_185064461_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
ENSMUST00000111007.8	chr5	-	1058	5	FSM	ENSMUSG00000037221.14	ENSMUST00000111007.8	1318	5	17	243	17	-243	multi-exon	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCGTTGCTCCTCCTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	137598953	137595149	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
ENSMUST00000111018.2	chr1	+	823	2	FSM	ENSMUSG00000026511.8	ENSMUST00000111018.2	823	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCTTTCTTGCCAGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	181952301	181959484	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_181952541_181958900
ENSMUST00000111035.2	chr5	-	988	1	FSM	ENSMUSG00000029715.6	ENSMUST00000111035.2	988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTCGAATGGCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	137500687	137499699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_137499700_137500700
ENSMUST00000111050.10	chr2	+	3965	2	FSM	ENSMUSG00000048482.15	ENSMUST00000111050.10	3965	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAATTTTTAATGTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	109522780	109557352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_109523120_109553726
ENSMUST00000111068.8	chr1	-	1699	9	FSM	ENSMUSG00000038776.14	ENSMUST00000111068.8	1699	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGGGCCAGATACCTT	NA	NA	NA	NA	NA	NA	NA	NA	180845134	180817118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_180817546_180817957_180818084_180819497_180819607_180821443_180821611_180822192_180822323_180823513_180823742_180827287_180827469_180829363_180829552_180844991
ENSMUST00000111093.8	chr5	+	1902	6	FSM	ENSMUSG00000001739.15	ENSMUST00000111093.8	1902	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTGCTGTCATGGG	NA	NA	NA	NA	NA	NA	NA	NA	136995469	137004712	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_136995483_136996697_136997178_137001173_137001339_137003294_137003377_137003463_137003581_137003667
ENSMUST00000111094.8	chr5	+	734	5	FSM	ENSMUSG00000019054.14	ENSMUST00000111094.8	948	5	131	83	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCTTAGCCCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	136982259	136995003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_136982445_136991852_136991986_136993946_136994024_136994418_136994525_136994770
ENSMUST00000111104.2	chr1	-	1475	10	FSM	ENSMUSG00000010609.16	ENSMUST00000111104.2	1475	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAATAAAAACGTGT	NA	NA	NA	NA	NA	NA	NA	NA	180073322	180055009	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_180055294_180056407_180056527_180056950_180057050_180057406_180057491_180061175_180061275_180062553_180062775_180063475_180063544_180066437_180066580_180068295_180068511_180073178
ENSMUST00000111147.8	chr2	-	2101	18	FSM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	171	1797	171	-1797	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGCAAGTGAATTAATGTG	NA	NA	NA	NA	NA	NA	NA	NA	103627278	103597159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
ENSMUST00000111187.10	chr5	+	290	3	FSM	ENSMUSG00000029681.13	ENSMUST00000111187.10	564	3	56	218	33	-218	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCAGCAGTTTTGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	135197298	135202084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_135197453_135199940_135200017_135202024
ENSMUST00000111230.8	chr1	+	741	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	198	647	198	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	978	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATGAATGGTTAATATA	NA	NA	NA	NA	NA	NA	NA	NA	172327811	172334300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133
ENSMUST00000111240.8	chr2	-	1395	10	FSM	ENSMUSG00000040174.15	ENSMUST00000111240.8	1395	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGAACATGTTTGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	93841152	93810894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838472_93838768_93838938_93841027
ENSMUST00000111257.8	chr2	-	1003	10	FSM	ENSMUSG00000027215.14	ENSMUST00000111257.8	1003	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGCCTCCCATGGGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	93283024	93250174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93273713_93273790_93282953
ENSMUST00000111295.8	chr1	-	1335	7	FSM	ENSMUSG00000013997.11	ENSMUST00000111295.8	1335	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTGGACATGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	171173213	171169811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173135
ENSMUST00000111298.6	chr5	+	3570	7	FSM	ENSMUSG00000053094.16	ENSMUST00000111298.6	3570	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	263	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTGCCGTTTTAATTC	NA	NA	NA	NA	NA	NA	NA	NA	130251175	130272507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_130251414_130258289_130258468_130260595_130260882_130265643_130265795_130267087_130267272_130269188_130269333_130270118
ENSMUST00000111302.4	chr1	-	914	6	FSM	ENSMUSG00000062963.11	ENSMUST00000111302.4	914	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAAGATTTGGGCCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	171122560	171116284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117790_171122206
ENSMUST00000111308.8	chr5	-	2038	4	FSM	ENSMUSG00000025534.18	ENSMUST00000111308.8	2038	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	130031706	130027499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_130028911_130029201_130029384_130029597_130029784_130031447
ENSMUST00000111327.8	chr1	-	2812	9	FSM	ENSMUSG00000005674.10	ENSMUST00000111327.8	2812	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGTGTTTCACAGATCC	NA	NA	NA	NA	NA	NA	NA	NA	171049753	171045370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472
ENSMUST00000111349.9	chr2	+	1993	11	FSM	ENSMUSG00000027257.14	ENSMUST00000111349.9	1993	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCGTCTTTTGATAGCC	NA	NA	NA	NA	NA	NA	NA	NA	91087673	91095024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_91087922_91090212_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
ENSMUST00000111350.10	chr1	-	2311	10	FSM	ENSMUSG00000026670.16	ENSMUST00000111350.10	2311	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAATGCATAAAAACAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	170002526	169969506	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_169970142_169970965_169971033_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194_169994518_170002318
ENSMUST00000111354.2	chr2	-	1738	10	FSM	ENSMUSG00000002108.11	ENSMUST00000111354.2	1738	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGCAGGGTTCTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	91025496	91014436	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_91014828_91014999_91015095_91015286_91015401_91020529_91020630_91020806_91020987_91021083_91021293_91022133_91022401_91022904_91023088_91023961_91024042_91025377
ENSMUST00000111356.8	chr2	-	1955	10	FSM	ENSMUSG00000002108.11	ENSMUST00000111356.8	1955	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCTCTACCACTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	91025380	91014405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_91014828_91014999_91015095_91015286_91015401_91020529_91020630_91020806_91020987_91021083_91021293_91022133_91022401_91022904_91023088_91023961_91024042_91025075
ENSMUST00000111378.10	chr14	-	795	11	FSM	ENSMUSG00000079197.11	ENSMUST00000111378.10	795	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTACCTGTGTTGTTCATTG	NA	NA	NA	NA	NA	NA	NA	NA	55828558	55824898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828478
ENSMUST00000111388.5	chr14	+	685	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	277	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTATTCGGTCTGCATTC	NA	NA	NA	NA	NA	NA	NA	NA	46321584	46322269	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_46321600_46322300
ENSMUST00000111417.9	chr5	+	947	4	FSM	ENSMUSG00000079215.9	ENSMUST00000111417.9	4092	4	73	3072	73	-3072	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATGTGCAGGGAATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	124939827	124962622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_124939947_124940417_124940573_124961771_124961837_124962014
ENSMUST00000111432.10	chr1	+	1529	4	FSM	ENSMUSG00000040713.13	ENSMUST00000111432.10	2163	4	0	634	0	-634	multi-exon	FALSE	canonical	NA	NA	NA	NA	233	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATGAGAAAGGAACCGCAG	NA	NA	NA	NA	NA	NA	NA	NA	165591314	165602243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_165591708_165597381_165597502_165598200_165598386_165601412
ENSMUST00000111445.10	chr2	+	1450	6	FSM	ENSMUSG00000002104.12	ENSMUST00000111445.10	1450	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAGTGATTCTGACCCTT	NA	NA	NA	NA	NA	NA	NA	NA	90865964	90876074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_90866334_90866891_90867231_90872198_90872358_90873304_90873404_90875184_90875385_90875790
ENSMUST00000111446.10	chr2	+	1458	7	FSM	ENSMUSG00000002104.12	ENSMUST00000111446.10	1458	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGCTAGTGATTCTGACC	NA	NA	NA	NA	NA	NA	NA	NA	90865971	90876071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_90866334_90866891_90867231_90873304_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
ENSMUST00000111461.13	chr2	-	659	4	FSM	ENSMUSG00000063235.19	ENSMUST00000111461.13	1316	4	376	281	376	-281	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAAGATTGTCTGGCTA	NA	NA	NA	NA	NA	NA	NA	NA	90748013	90741337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_90741664_90744327_90744520_90747772_90747854_90747953
ENSMUST00000111467.4	chr2	+	1474	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111467.4	2281	12	-42	849	0	-849	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCCTACAGAAGGGAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	90677574	90696135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUST00000111472.6	chr5	-	648	4	FSM	ENSMUSG00000029394.12	ENSMUST00000111472.6	648	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGGAGTTGAGTGCAAACC	NA	NA	NA	NA	NA	NA	NA	NA	124490296	124483825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_124484218_124486663_124486791_124488140_124488236_124490262
ENSMUST00000111490.2	chr1	+	241	2	FSM	ENSMUSG00000041396.14	ENSMUST00000111490.2	1419	2	0	1178	0	-1178	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCATCATCCTTTGGTAA	NA	NA	NA	NA	NA	NA	NA	NA	163822457	163823634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_163822547_163823482
ENSMUST00000111524.8	chr19	-	1251	7	FSM	ENSMUSG00000025085.17	ENSMUST00000111524.8	1251	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATCAGTGGTTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	57303343	57119037	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_57119420_57121293_57121388_57123013_57123141_57140704_57140815_57143583_57143768_57161756_57161892_57303124
ENSMUST00000111535.8	chr6	-	1061	7	FSM	ENSMUSG00000068250.14	ENSMUST00000111535.8	1457	7	27	369	0	62	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTGTTGTTTTTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	149090183	149059013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149090103
ENSMUST00000111562.8	chr6	-	906	6	FSM	ENSMUSG00000039985.15	ENSMUST00000111562.8	906	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACTCTGAAGCCAGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	148846310	148824210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148846247
ENSMUST00000111594.3	chr1	+	344	2	FSM	ENSMUSG00000026698.9	ENSMUST00000111594.3	3290	2	42	2904	0	-1799	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTGACCAGAGGTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	161796796	161798100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_161796849_161797808
ENSMUST00000111668.8	chr5	-	4861	17	FSM	ENSMUSG00000029471.14	ENSMUST00000111668.8	4861	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGGGCCTCTCGGGGGTT	NA	NA	NA	NA	NA	NA	NA	NA	122917445	122869232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_122872309_122875050_122875094_122875495_122875597_122880162_122880292_122881932_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
ENSMUST00000111691.2	chr2	-	5380	19	FSM	ENSMUSG00000034101.15	ENSMUST00000111691.2	5380	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	84481109	84431126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
ENSMUST00000111721.2	chr6	+	1336	3	FSM	ENSMUSG00000040370.14	ENSMUST00000111721.2	1336	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	NA	NA	NA	NA	NA	NA	NA	145156911	145162265	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_145156971_145160909_145160998_145161076
ENSMUST00000111726.10	chr6	+	1374	3	FSM	ENSMUSG00000040370.14	ENSMUST00000111726.10	1374	3	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	NA	NA	NA	NA	NA	NA	NA	145156881	145162265	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_145156979_145160909_145160998_145161076
ENSMUST00000111754.9	chr1	+	534	3	FSM	ENSMUSG00000050565.17	ENSMUST00000111754.9	2491	3	46	1911	46	-1911	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAGTAAGTGACTGACAG	NA	NA	NA	NA	NA	NA	NA	NA	155911517	155927364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_155911667_155916820_155916881_155927039
ENSMUST00000111755.5	chr7	-	978	2	FSM	ENSMUSG00000091900.4	ENSMUST00000111755.5	978	2	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	1329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGCAGGAGCTGGACTGA	NA	NA	NA	NA	NA	NA	NA	NA	115683793	115682601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_115683208_115683421
ENSMUST00000111765.8	chr5	+	2788	12	FSM	ENSMUSG00000029458.15	ENSMUST00000111765.8	3861	12	0	1073	0	-1073	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATTCAAGGGGCAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	121798931	121824235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_121799346_121800062_121800225_121801358_121801555_121803161_121803352_121810147_121810262_121813292_121813442_121816826_121816903_121817273_121817413_121817879_121817990_121820842_121820933_121822433_121822538_121823191
ENSMUST00000111807.5	chr19	+	3606	6	FSM	ENSMUSG00000006435.17	ENSMUST00000111807.5	3606	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGAGGGCTGTGCTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	47217349	47247874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_47217536_47228240_47228483_47228788_47229111_47241557_47242248_47245150_47245298_47245855
ENSMUST00000111818.8	chr2	-	3255	20	FSM	ENSMUSG00000027014.15	ENSMUST00000111818.8	3255	20	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATTGTCTTTTTTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	77776697	77726111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
ENSMUST00000111820.4	chr9	+	1920	2	FSM	ENSMUSG00000079260.4	ENSMUST00000111820.4	2921	2	3	998	3	-998	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGCAGGGAGAGGCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	114230175	114235346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_114230338_114233588
ENSMUST00000111833.3	chr2	-	631	3	FSM	ENSMUSG00000044033.17	ENSMUST00000111833.3	631	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGATTTTGATGTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	77000920	76992324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_76992641_76998854_76998978_77000728
ENSMUST00000111887.10	chr1	+	1325	8	FSM	ENSMUSG00000023150.15	ENSMUST00000111887.10	2783	8	0	1458	0	-1458	multi-exon	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTTTGTGTTTTCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	151220259	151231092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151230917
ENSMUST00000111891.4	chr6	-	828	6	FSM	ENSMUSG00000030220.14	ENSMUST00000111891.4	828	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACACACACATTTCATCAC	NA	NA	NA	NA	NA	NA	NA	NA	136918897	136900998	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_136901325_136903669_136903734_136906609_136906687_136909257_136909342_136910581_136910772_136918810
ENSMUST00000111892.8	chr6	-	1153	6	FSM	ENSMUSG00000030220.14	ENSMUST00000111892.8	1153	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGAGTTGTCTTATGC	NA	NA	NA	NA	NA	NA	NA	NA	136918501	136900652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_136901325_136903669_136903734_136906609_136906687_136909257_136909342_136910581_136910772_136918435
ENSMUST00000111909.8	chr6	-	1087	6	FSM	ENSMUSG00000030206.14	ENSMUST00000111909.8	1087	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1973	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTCTCCTGAGCCTTATT	NA	NA	NA	NA	NA	NA	NA	NA	135231168	135214326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_135214744_135217070_135217183_135218242_135218396_135219171_135219220_135221078_135221398_135231130
ENSMUST00000111957.10	chr1	+	371	4	FSM	ENSMUSG00000018196.19	ENSMUST00000111957.10	580	4	31	178	28	-178	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCAGTGTTATTTAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	143615383	143622336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_143615423_143617385_143617450_143620784_143620962_143622245
ENSMUST00000111961.8	chr2	+	1734	10	FSM	ENSMUSG00000059005.14	ENSMUST00000111961.8	1734	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	NA	NA	NA	NA	NA	NA	NA	NA	75489623	75496465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75494016_75494059_75495371_75495495_75495577_75495646_75495741
ENSMUST00000111996.8	chr2	-	723	5	FSM	ENSMUSG00000018770.10	ENSMUST00000111996.8	723	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	NA	NA	NA	NA	NA	NA	NA	73741669	73738790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741585
ENSMUST00000112025.3	chr1	-	565	3	FSM	ENSMUSG00000079283.3	ENSMUST00000112025.3	565	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	572	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGTCCACAAGATGCACG	NA	NA	NA	NA	NA	NA	NA	NA	138784590	138779720	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_138779912_138781308_138781411_138784318
ENSMUST00000112028.10	chr19	-	3136	12	FSM	ENSMUSG00000025198.17	ENSMUST00000112028.10	3136	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGTGTTCTATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	44058224	44023382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058129
ENSMUST00000112053.2	chr9	-	1054	2	FSM	ENSMUSG00000049734.10	ENSMUST00000112053.2	1054	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGACTGCTTGCCGCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	108888319	108887005	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_108887997_108888256
ENSMUST00000112055.8	chr2	-	1251	7	FSM	ENSMUSG00000027108.16	ENSMUST00000112055.8	1251	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCCTTGGTGTGTTTGGG	NA	NA	NA	NA	NA	NA	NA	NA	73043304	72923545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_72924069_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203
ENSMUST00000112086.3	chr1	+	1094	14	FSM	ENSMUSG00000026414.14	ENSMUST00000112086.3	1094	14	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATGGAATAGTGTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	135768612	135779998	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_135768651_135771511_135771553_135773292_135773383_135773635_135773672_135774459_135774494_135775446_135775511_135775718_135775836_135776548_135776627_135777087_135777199_135778116_135778126_135778448_135778559_135779089_135779181_135779433_135779475_135779764
ENSMUST00000112090.2	chr5	-	554	2	FSM	ENSMUSG00000009013.6	ENSMUST00000112090.2	729	2	249	-74	249	74	multi-exon	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGTATGTCTCTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	115438722	115436489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_115436893_115438571
ENSMUST00000112091.9	chrX	-	1447	3	FSM	ENSMUSG00000079316.11	ENSMUST00000112091.9	1447	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	523	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGTTGCAATGCTTTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	165262863	165240248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_165241340_165245310_165245339_165262535
ENSMUST00000112115.2	chrX	-	2473	7	FSM	ENSMUSG00000031352.11	ENSMUST00000112115.2	2473	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTAGAGTGATTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	168103290	168094525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168102971
ENSMUST00000112138.8	chr2	+	2466	16	FSM	ENSMUSG00000027012.16	ENSMUST00000112138.8	2466	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTCTCAAATTTTCACT	NA	NA	NA	NA	NA	NA	NA	NA	71042101	71093635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ENSMUST00000112139.8	chr2	+	2483	16	FSM	ENSMUSG00000027012.16	ENSMUST00000112139.8	2483	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCAAATTTTCACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	71042084	71093638	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092994
ENSMUST00000112143.4	chr5	+	1478	6	FSM	ENSMUSG00000041827.16	ENSMUST00000112143.4	2181	6	171	532	-10	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACGGAGGGGGCAGCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	115061493	115075442	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_115061669_115066081_115066365_115067898_115068063_115070781_115071024_115073979_115074128_115074976
ENSMUST00000112148.4	chr6	+	806	6	FSM	ENSMUSG00000001517.15	ENSMUST00000112148.4	2229	6	462	961	462	-961	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGAGAAACCCCTGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	128343129	128349968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_128343164_128344249_128344402_128346256_128346449_128347919_128348049_128349496_128349567_128349739
ENSMUST00000112151.2	chr6	-	1108	3	FSM	ENSMUSG00000048668.17	ENSMUST00000112151.2	1108	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATGCAGCCTCGTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	128339831	128334327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_128335157_128336068_128336318_128339801
ENSMUST00000112159.9	chr2	+	2490	8	FSM	ENSMUSG00000041966.19	ENSMUST00000112159.9	2490	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTATTGCATACTCTATA	NA	NA	NA	NA	NA	NA	NA	NA	70886127	70913802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70912254
ENSMUST00000112165.4	chr17	+	948	1	FSM	ENSMUSG00000093884.3	ENSMUST00000112165.4	948	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACCTATAAGAAAATTCTT	NA	NA	NA	NA	NA	NA	NA	NA	33418035	33418983	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_33418000_33419000
ENSMUST00000112168.4	chr17	+	948	1	FSM	ENSMUSG00000094891.3	ENSMUST00000112168.4	948	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACCTATAAGAAAATTCTT	NA	NA	NA	NA	NA	NA	NA	NA	33395389	33396337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_33395400_33396300
ENSMUST00000112176.8	chrX	-	698	3	FSM	ENSMUSG00000049775.17	ENSMUST00000112176.8	698	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGGTGTGTCTGCTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	165992145	165990090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_165990532_165990932_165991048_165992003
ENSMUST00000112192.8	chrX	+	1294	4	FSM	ENSMUSG00000079317.11	ENSMUST00000112192.8	1294	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGTGGTCATTTGATG	NA	NA	NA	NA	NA	NA	NA	NA	165223771	165236134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_165223836_165229786_165229899_165232783_165232900_165235132
ENSMUST00000112205.2	chr2	+	1196	9	FSM	ENSMUSG00000014959.13	ENSMUST00000112205.2	1196	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGAGGCCTCCCGTTCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	70491933	70519704	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526
ENSMUST00000112207.8	chr14	-	2139	15	FSM	ENSMUSG00000021948.18	ENSMUST00000112207.8	2139	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATAATAGGCTGTATAT	NA	NA	NA	NA	NA	NA	NA	NA	30329779	30317548	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564
ENSMUST00000112210.11	chr14	-	2777	18	FSM	ENSMUSG00000021948.18	ENSMUST00000112210.11	2777	18	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGTGGGGACATTTA	NA	NA	NA	NA	NA	NA	NA	NA	30348167	30317310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30347936
ENSMUST00000112221.8	chr6	-	1871	9	FSM	ENSMUSG00000030346.17	ENSMUST00000112221.8	1871	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATGCCTCGCCTAGTT	NA	NA	NA	NA	NA	NA	NA	NA	126916550	126900377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
ENSMUST00000112268.4	chr14	+	1169	5	FSM	ENSMUSG00000042682.11	ENSMUST00000112268.4	1678	5	128	381	128	-381	multi-exon	FALSE	canonical	NA	NA	NA	NA	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACAGTCCATCGCGGAGGG	NA	NA	NA	NA	NA	NA	NA	NA	29690392	29697238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_29690494_29691982_29692074_29693744_29693829_29695317_29695405_29696432
ENSMUST00000112268.4-1	chr14	+	1170	5	FSM	ENSMUSG00000042682.11	ENSMUST00000112268.4	1678	5	0	508	0	-508	multi-exon	FALSE	canonical	NA	NA	NA	NA	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTATGCTCCCCAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	29690264	29697111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_29690494_29691982_29692074_29693744_29693829_29695317_29695405_29696432
ENSMUST00000112295.9-1	chr9	+	2060	9	FSM	ENSMUSG00000070284.11	ENSMUST00000112295.9	2702	9	213	429	111	-260	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGGCAGGGAATTTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	107926653	107929571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
ENSMUST00000112303.8	chrX	+	2638	19	FSM	ENSMUSG00000031360.15	ENSMUST00000112303.8	3289	19	27	624	0	382	multi-exon	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAAAAATTTCCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	161684627	161814697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_161684836_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
ENSMUST00000112311.8	chr5	+	1395	4	FSM	ENSMUSG00000025825.13	ENSMUST00000112311.8	1395	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGAAGCTGTCTACCTT	NA	NA	NA	NA	NA	NA	NA	NA	113910863	113915859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_113911006_113912323_113912438_113913278_113913390_113914831
ENSMUST00000112311.8-0	chr5	+	501	4	FSM	ENSMUSG00000025825.13	ENSMUST00000112311.8	1395	4	-55	949	0	-949	multi-exon	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTCTGCCCCACCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	113910808	113914910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_113911006_113912323_113912438_113913278_113913390_113914831
ENSMUST00000112315.2	chrX	-	2525	6	FSM	ENSMUSG00000038344.15	ENSMUST00000112315.2	2525	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTATGTCTCATCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	161612450	161571913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_161573803_161580635_161580807_161590480_161590573_161594287_161594385_161594531_161594592_161612234
ENSMUST00000112320.8	chr2	-	1527	7	FSM	ENSMUSG00000005233.17	ENSMUST00000112320.8	1527	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	69036479	69024238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036173
ENSMUST00000112376.2	chrX	+	2310	15	FSM	ENSMUSG00000031295.14	ENSMUST00000112376.2	2310	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGATATGTCACTTGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	159285460	159341951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462
ENSMUST00000112383.8	chr5	-	754	4	FSM	ENSMUSG00000066975.13	ENSMUST00000112383.8	754	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAACTGTGTCCCCTCAA	NA	NA	NA	NA	NA	NA	NA	NA	112399028	112394359	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_112394685_112396040_112396184_112397034_112397177_112398884
ENSMUST00000112384.10	chr14	+	468	5	FSM	ENSMUSG00000025290.18	ENSMUST00000112384.10	468	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGAGATTGGATACAGGTA	NA	NA	NA	NA	NA	NA	NA	NA	24540748	24545500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545497
ENSMUST00000112386.8	chr1	+	1202	5	FSM	ENSMUSG00000026433.14	ENSMUST00000112386.8	1202	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGCATCTGCGTTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	131794961	131800477	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
ENSMUST00000112391.8	chr19	+	1293	5	FSM	ENSMUSG00000023307.15	ENSMUST00000112391.8	1293	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATACTGTTTCCTGTCATC	NA	NA	NA	NA	NA	NA	NA	NA	37184966	37198475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_37185304_37188069_37188273_37194581_37194713_37197701_37197886_37198037
ENSMUST00000112439.9	chr6	-	1328	8	FSM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGTATGCCAGGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	124942501	124935375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_124935736_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
ENSMUST00000112451.8	chrX	+	2226	13	FSM	ENSMUSG00000040990.18	ENSMUST00000112451.8	3914	13	13	1675	0	-178	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGACTTTTCAGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	158623476	158756985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_158623608_158648320_158648397_158661117_158661213_158684671_158684780_158696984_158697037_158700231_158700313_158702753_158702914_158726192_158726279_158741208_158741319_158744760_158744890_158749209_158749479_158754857_158754922_158756120
ENSMUST00000112483.3	chr11	+	244	1	FSM	ENSMUSG00000084064.2	ENSMUST00000112483.3	244	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTAAAATCCCAAAGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	27833111	27833355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_27833100_27833400
ENSMUST00000112487.3	chr17	-	2041	9	FSM	ENSMUSG00000056121.17	ENSMUST00000112487.3	2041	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGAGTCTTGAGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	78725581	78685313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_78686175_78689036_78689103_78692172_78692249_78694419_78694501_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
ENSMUST00000112495.8	chr2	+	2039	8	FSM	ENSMUSG00000064289.16	ENSMUST00000112495.8	2039	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTCTGATGGGATTTA	NA	NA	NA	NA	NA	NA	NA	NA	61423420	61484515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_61423553_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
ENSMUST00000112504.4	chr6	-	204	1	FSM	ENSMUSG00000080205.3	ENSMUST00000112504.4	204	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCGCAGAGGCCATCAAGG	NA	NA	NA	NA	NA	NA	NA	NA	54154668	54154464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_54154500_54154700
ENSMUST00000112505.9	chr5	-	2098	6	FSM	ENSMUSG00000029500.17	ENSMUST00000112505.9	2098	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGTTTAGAAACCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	110417779	110406995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_110408304_110413377_110413512_110413605_110413695_110413776_110413903_110414952_110415132_110417517
ENSMUST00000112521.8	chrX	+	767	5	FSM	ENSMUSG00000041476.13	ENSMUST00000112521.8	898	5	133	-2	94	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATGAATCTTTATCAAAT	NA	NA	NA	NA	NA	NA	NA	NA	156482255	156535587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_156482310_156485951_156486009_156497582_156497670_156503926_156504076_156535167
ENSMUST00000112521.8-1	chrX	+	799	5	FSM	ENSMUSG00000041476.13	ENSMUST00000112521.8	898	5	0	99	0	-99	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCACGGTCTTTTGGTCA	NA	NA	NA	NA	NA	NA	NA	NA	156482122	156535486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_156482310_156485951_156486009_156497582_156497670_156503926_156504076_156535167
ENSMUST00000112540.8	chr5	+	2081	4	FSM	ENSMUSG00000066613.15	ENSMUST00000112540.8	2081	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGTCATGGTATCTTT	NA	NA	NA	NA	NA	NA	NA	NA	110144386	110158277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_110144500_110154809_110154937_110155121_110155183_110156497
ENSMUST00000112557.9	chr9	-	1514	12	NNC	ENSMUSG00000032570.18	novel	3993	25	NA	NA	33564	-1100	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTGATTTGAACTTT	NA	NA	NA	NA	NA	NA	NA	NA	105313783	105290121	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_-_105290389_105291832_105291975_105295248_105295345_105295742_105295891_105297380_105297498_105298772_105298842_105300141_105300309_105301368_105301420_105308693_105308792_105309852_105310024_105312250_105312408_105313752
ENSMUST00000112570.2	chr1	+	2334	10	FSM	ENSMUSG00000026349.15	ENSMUST00000112570.2	4511	10	0	2177	0	-2177	multi-exon	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGCAGCTGAGAACATT	NA	NA	NA	NA	NA	NA	NA	NA	127701900	127731492	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127729414_127729898_127731031_127731128
ENSMUST00000112585.8	chr6	-	2127	8	FSM	ENSMUSG00000040613.15	ENSMUST00000112585.8	2127	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATTGTTTTTGTGTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	122579330	122554759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045_122568164_122573590_122573737_122577016_122577085_122579215
ENSMUST00000112587.11	chr6	-	2072	7	FSM	ENSMUSG00000040613.15	ENSMUST00000112587.11	2072	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTGTTTTTGTGTTTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	122577086	122554757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045_122568220_122573590_122573737_122577016
ENSMUST00000112610.2	chr6	+	1559	8	FSM	ENSMUSG00000007458.15	ENSMUST00000112610.2	2539	8	279	701	279	-701	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATAGTTTGAATTGGACC	NA	NA	NA	NA	NA	NA	NA	NA	122285957	122293938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_122286126_122288562_122288587_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
ENSMUST00000112617.4	chrX	+	992	6	FSM	ENSMUSG00000025260.11	ENSMUST00000112617.4	992	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGCAGTCTTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	150784840	150787438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_150784931_150785273_150785439_150786356_150786522_150786618_150786778_150786857_150786967_150787134
ENSMUST00000112637.10	chr19	+	1368	9	FSM	ENSMUSG00000024921.18	ENSMUST00000112637.10	1962	9	40	554	20	218	multi-exon	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAAGATTTTTATCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	26725842	26755167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_26725945_26727251_26727348_26728521_26728557_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
ENSMUST00000112639.8	chr1	-	2931	5	FSM	ENSMUSG00000026389.17	ENSMUST00000112639.8	2931	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTGTCGCCTGTAGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	120198153	120154361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_120155659_120161971_120162137_120169161_120169690_120171497_120171998_120197712
ENSMUST00000112640.8	chr1	-	2752	5	FSM	ENSMUSG00000026389.17	ENSMUST00000112640.8	2752	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTACAATAGTTAAAATTGT	NA	NA	NA	NA	NA	NA	NA	NA	120193014	120154152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_120155659_120161971_120162137_120169161_120169690_120171497_120171998_120192961
ENSMUST00000112643.2	chr1	-	2873	6	FSM	ENSMUSG00000026389.17	ENSMUST00000112643.2	2873	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAGGGACCCTTTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	120200435	120154382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_120155659_120161971_120162137_120169161_120169690_120171497_120171998_120197854_120197990_120200166
ENSMUST00000112648.8	chr1	-	504	3	FSM	ENSMUSG00000026385.17	ENSMUST00000112648.8	504	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTAGTTTTTACCTACAA	NA	NA	NA	NA	NA	NA	NA	NA	120047868	120041066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_120041264_120044115_120044179_120047624
ENSMUST00000112648.8-0	chr1	-	432	3	FSM	ENSMUSG00000026385.17	ENSMUST00000112648.8	504	3	129	-57	129	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	962	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTGTTGTCTGGGTGCGT	NA	NA	NA	NA	NA	NA	NA	NA	120047739	120041009	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_120041264_120044115_120044179_120047624
ENSMUST00000112697.10	chrX	-	1851	11	FSM	ENSMUSG00000025268.16	ENSMUST00000112697.10	1851	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACAGGTATCTGTCATGG	NA	NA	NA	NA	NA	NA	NA	NA	149595711	149589712	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666
ENSMUST00000112699.9	chrX	-	2183	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112699.9	2183	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGTCAAAGTTTCCATCTG	NA	NA	NA	NA	NA	NA	NA	NA	149597341	149589365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149597224
ENSMUST00000112700.8	chrX	-	2107	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	149596703	149589416	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149596611
ENSMUST00000112721.10	chrX	-	1852	6	FSM	ENSMUSG00000025269.17	ENSMUST00000112721.10	1852	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCATGTTGAGTGGATAT	NA	NA	NA	NA	NA	NA	NA	NA	149371092	149354503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369063_149370038_149370123_149370918
ENSMUST00000112747.2	chr5	+	1507	6	FSM	ENSMUSG00000029304.15	ENSMUST00000112747.2	1507	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAAGGAGTCTGGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	104584057	104588909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUST00000112748.8	chr5	+	855	7	FSM	ENSMUSG00000029304.15	ENSMUST00000112748.8	1456	7	18	583	18	-579	multi-exon	FALSE	canonical	NA	NA	NA	NA	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAGTTCCAAAGCCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	104583004	104588330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_104583115_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUST00000112860.2	chr6	+	948	3	FSM	ENSMUSG00000059689.16	ENSMUST00000112860.2	1231	3	-39	322	0	221	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGGCAACTGTCTCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	117818202	117822595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_117818359_117820213_117820354_117821943
ENSMUST00000112862.7	chr2	+	1339	4	FSM	ENSMUSG00000026755.15	ENSMUST00000112862.7	1339	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGCTTCAAAAGTCATC	NA	NA	NA	NA	NA	NA	NA	NA	38898087	38905889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_38898357_38903126_38903200_38903734_38903912_38905069
ENSMUST00000112890.3	chr1	-	1055	2	FSM	ENSMUSG00000026281.16	ENSMUST00000112890.3	1055	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCCGGCTTGTTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	93729628	93727786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_93728633_93729419
ENSMUST00000112893.2	chr1	-	1040	3	FSM	ENSMUSG00000026281.16	ENSMUST00000112893.2	1040	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCCTCTCATAACCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	93726723	93720445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_93720666_93722447_93722646_93726101
ENSMUST00000112898.8	chr5	+	460	5	FSM	ENSMUSG00000016833.15	ENSMUST00000112898.8	460	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCAACTAATTTGAGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	100946602	100952327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100951835_100951896_100952197
ENSMUST00000112915.3	chr17	-	1013	5	FSM	ENSMUSG00000079414.4	ENSMUST00000112915.3	1013	5	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCTCCTAAGTTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	57412942	57399034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_57399770_57409054_57409154_57410349_57410461_57410461_57410485_57412897
ENSMUST00000112999.8	chr1	-	653	3	FSM	ENSMUSG00000073616.11	ENSMUST00000112999.8	653	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	NA	NA	NA	NA	NA	NA	NA	92568286	92564866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_92565126_92567408_92567482_92567965
ENSMUST00000113038.8	chr17	+	3483	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113038.8	3483	17	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	56610399	56630486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ENSMUST00000113039.9	chr17	+	3391	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113039.9	3391	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	56611347	56630486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ENSMUST00000113043.8	chrX	+	4600	7	FSM	ENSMUSG00000042515.14	ENSMUST00000113043.8	4600	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATTTTGTATTATTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	138110790	138139082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_138110967_138111487_138111556_138112107_138112185_138113839_138113988_138132034_138132164_138134427_138134595_138135247
ENSMUST00000113078.8	chr2	-	1513	6	FSM	ENSMUSG00000035949.16	ENSMUST00000113078.8	1872	6	137	222	137	-219	multi-exon	FALSE	canonical	NA	NA	NA	NA	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGAGGGCTTGTTTACT	NA	NA	NA	NA	NA	NA	NA	NA	34713056	34695571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569
ENSMUST00000113097.8	chrX	-	1825	4	FSM	ENSMUSG00000031422.17	ENSMUST00000113097.8	1825	4	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	NA	NA	NA	NA	NA	NA	NA	135644439	135633690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135644341
ENSMUST00000113110.5	chr9	-	503	3	FSM	ENSMUSG00000079427.11	ENSMUST00000113110.5	801	3	134	164	-92	-74	multi-exon	TRUE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGCATCCTAAGTTACAC	NA	NA	NA	NA	NA	NA	NA	NA	88601732	88570818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_88571039_88597540_88597803_88601711
ENSMUST00000113112.2	chrX	+	826	3	FSM	ENSMUSG00000046432.13	ENSMUST00000113112.2	826	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGCCACAAGAACTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	135171053	135172713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_135171151_135171558_135171632_135172057
ENSMUST00000113113.2	chrX	+	766	2	FSM	ENSMUSG00000046432.13	ENSMUST00000113113.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTGTCCTTAAAGCAT	NA	NA	NA	NA	NA	NA	NA	NA	135171523	135172669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_135171632_135172011
ENSMUST00000113126.3	chr2	+	2318	11	FSM	ENSMUSG00000038696.15	ENSMUST00000113126.3	3018	11	0	700	0	686	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATATAGTGTGACAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	34322036	34514262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_34322343_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
ENSMUST00000113203.2	chrX	+	2315	2	FSM	ENSMUSG00000045427.14	ENSMUST00000113203.2	2315	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCATAGTTTGATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	133501973	133507809	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_133502083_133505603
ENSMUST00000113211.8	chrX	+	483	5	FSM	ENSMUSG00000079435.10	ENSMUST00000113211.8	483	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAAGTTTTTCTCCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	133486402	133488805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_133486469_133486826_133486933_133487259_133487328_133488199_133488323_133488685
ENSMUST00000113231.4	chr1	+	1119	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113231.4	1119	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTCATGCTCTTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	87142007	87155786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
ENSMUST00000113233.8	chr1	+	774	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113233.8	1807	7	25	1008	0	-184	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCGCGATTGAATGTGC	NA	NA	NA	NA	NA	NA	NA	NA	87141660	87155570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
ENSMUST00000113234.8	chr5	-	2286	10	FSM	ENSMUSG00000044221.15	ENSMUST00000113234.8	2286	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATCAAAGTTCTGTATA	NA	NA	NA	NA	NA	NA	NA	NA	88823525	88807316	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_88808319_88810393_88810470_88810978_88811115_88811922_88812045_88813615_88813801_88818034_88818171_88819020_88819165_88820463_88820620_88821551_88821709_88823353
ENSMUST00000113245.9	chr9	+	1227	4	FSM	ENSMUSG00000032251.13	ENSMUST00000113245.9	2158	4	0	931	0	-264	multi-exon	TRUE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAGGTAAAAGGAAAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	82711592	82728809	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_82712393_82719470_82719537_82728351_82728483_82728579
ENSMUST00000113277.8	chr2	+	2063	7	FSM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	946	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAGTGAGTGTATTGA	NA	NA	NA	NA	NA	NA	NA	NA	32515448	32525066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_32515551_32518462_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ENSMUST00000113278.9	chr2	+	1559	7	FSM	ENSMUSG00000026817.15	ENSMUST00000113278.9	2085	7	0	526	0	-520	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATACAGCTAGGTGGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	32511769	32524544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_32511890_32518462_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ENSMUST00000113286.8	chrX	+	1944	11	FSM	ENSMUSG00000031256.12	ENSMUST00000113286.8	2717	11	119	654	119	-654	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGGAAATATATTAAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	132960082	132975958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261
ENSMUST00000113290.8	chr2	+	1455	6	FSM	ENSMUSG00000026811.19	ENSMUST00000113290.8	2402	6	82	865	3	410	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTGCCCCACAGTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	32497054	32509951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_32497124_32499237_32499329_32502235_32502416_32504792_32505200_32508508_32508617_32509351
ENSMUST00000113343.8	chrX	+	445	3	FSM	ENSMUSG00000079450.12	ENSMUST00000113343.8	3301	3	73	2783	9	-402	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTGTTCCTTTGGATAT	NA	NA	NA	NA	NA	NA	NA	NA	122013264	122052565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_122013335_122027150_122027267_122052306
ENSMUST00000113360.8	chr1	+	3128	9	FSM	ENSMUSG00000036707.17	ENSMUST00000113360.8	3805	9	100	577	100	-575	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTGTGCAGACTCAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	85721261	85778720	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_85721543_85746077_85746235_85763043_85763209_85765006_85765126_85769918_85770088_85772313_85772374_85775130_85775197_85775997_85776142_85776753
ENSMUST00000113395.8	chr2	-	712	4	FSM	ENSMUSG00000044627.12	ENSMUST00000113395.8	712	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	32172876	32168827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32172700
ENSMUST00000113400.3	chr2	-	522	5	FSM	ENSMUSG00000044627.12	ENSMUST00000113400.3	522	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATTGGGAGGGGTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	32178081	32168929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32178042
ENSMUST00000113423.10	chr19	+	990	4	FSM	ENSMUSG00000024959.15	ENSMUST00000113423.10	990	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTCTATCCTTCG	NA	NA	NA	NA	NA	NA	NA	NA	6919868	6929261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_6919993_6920234_6920415_6928007_6928199_6928766
ENSMUST00000113428.9	chrX	-	4135	23	FSM	ENSMUSG00000025665.17	ENSMUST00000113428.9	4135	23	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTAGTCTTGGTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	110372892	110297889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309967_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
ENSMUST00000113429.8	chr17	+	788	7	FSM	ENSMUSG00000002767.14	ENSMUST00000113429.8	998	7	20	190	0	-178	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTCATCGGCAAGGCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	46957195	46960867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959595_46959696_46959960_46960035_46960809
ENSMUST00000113453.9	chr5	-	1113	3	FSM	ENSMUSG00000059325.15	ENSMUST00000113453.9	1113	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGGAGTCTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	77243124	77234834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_77235664_77242712_77242870_77242997
ENSMUST00000113507.8	chr5	+	1358	6	FSM	ENSMUSG00000029233.16	ENSMUST00000113507.8	1358	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAATATGAATGTACAG	NA	NA	NA	NA	NA	NA	NA	NA	76294483	76303091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_76294608_76295532_76295676_76297049_76297086_76297599_76297798_76301370_76301506_76302369
ENSMUST00000113543.9	chr19	-	1498	10	FSM	ENSMUSG00000024799.17	ENSMUST00000113543.9	1498	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTTTTTCTTCTATC	NA	NA	NA	NA	NA	NA	NA	NA	6117872	6112851	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6113132_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
ENSMUST00000113584.8	chr1	+	1692	14	FSM	ENSMUSG00000033021.17	ENSMUST00000113584.8	1692	14	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	NA	NA	NA	NA	NA	NA	NA	75412586	75419817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_75412656_75412789_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUST00000113596.8	chr6	-	1657	8	FSM	ENSMUSG00000079477.10	ENSMUST00000113596.8	1657	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCCTGGATTGTGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	88022227	87976786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_87991567_87991703_87992613_87992701_88022054
ENSMUST00000113597.8	chr6	-	1859	7	FSM	ENSMUSG00000079477.10	ENSMUST00000113597.8	1859	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTCACTATCCTACTC	NA	NA	NA	NA	NA	NA	NA	NA	87996765	87976424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_87992613_87992701_87996617
ENSMUST00000113598.8	chr6	-	2031	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113598.8	2031	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGAACAGCTGCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	88021999	87976098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88021918
ENSMUST00000113600.10	chr6	-	2159	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113600.10	2159	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTCTTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	88022252	87976087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
ENSMUST00000113601.10	chr2	+	797	4	FSM	ENSMUSG00000039515.12	ENSMUST00000113601.10	1838	4	11	1030	0	-30	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATGTAATGGTTCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	30306153	30336788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_30306345_30316410_30316509_30333301_30333410_30336388
ENSMUST00000113606.2	chr6	+	1572	6	FSM	ENSMUSG00000030060.15	ENSMUST00000113606.2	1572	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGGCTCTCACCCAGTA	NA	NA	NA	NA	NA	NA	NA	NA	87891287	87913611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_87891678_87894820_87894965_87898507_87898634_87902613_87902793_87910223_87910417_87913071
ENSMUST00000113607.10	chr6	+	3114	24	FSM	ENSMUSG00000030058.18	ENSMUST00000113607.10	4140	24	143	883	29	-883	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAGCCGAATGACAACAGC	NA	NA	NA	NA	NA	NA	NA	NA	87864938	87889694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
ENSMUST00000113619.8	chr6	-	1661	5	FSM	ENSMUSG00000030057.16	ENSMUST00000113619.8	1661	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	NA	NA	NA	NA	NA	NA	NA	NA	87828062	87820063	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87827885
ENSMUST00000113621.10	chr2	-	1851	13	FSM	ENSMUSG00000026860.17	ENSMUST00000113621.10	1851	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	NA	NA	NA	NA	NA	NA	NA	30249344	30234822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30239237_30239250_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUST00000113624.3	chr9	+	2591	10	FSM	ENSMUSG00000032238.18	ENSMUST00000113624.3	2591	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAACAACAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	69196963	69287091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_69197331_69255413_69255500_69269020_69269163_69271447_69271844_69278496_69278619_69280370_69280504_69281296_69281405_69282666_69282778_69284059_69284173_69286078
ENSMUST00000113627.4	chrX	+	377	4	FSM	ENSMUSG00000079480.4	ENSMUST00000113627.4	489	4	0	112	0	-112	multi-exon	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTAAGTGGGATGGATA	NA	NA	NA	NA	NA	NA	NA	NA	101163052	101171163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_101163171_101165273_101165348_101170622_101170743_101171098
ENSMUST00000113643.8	chr2	+	1195	10	FSM	ENSMUSG00000079484.13	ENSMUST00000113643.8	1195	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAAATATATTTTATATG	NA	NA	NA	NA	NA	NA	NA	NA	30156860	30172149	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ENSMUST00000113669.9	chr17	-	742	4	FSM	ENSMUSG00000036315.14	ENSMUST00000113669.9	742	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGATGTTATGTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	37269374	37265247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040
ENSMUST00000113674.8	chr19	-	939	7	FSM	ENSMUSG00000024914.17	ENSMUST00000113674.8	939	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	5474949	5472854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5473054_5473358_5473448_5473587_5473703_5473799_5473920_5474209_5474304_5474388_5474462_5474700
ENSMUST00000113682.9	chr15	+	1480	7	FSM	ENSMUSG00000001285.13	ENSMUST00000113682.9	1480	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	807	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACCCTAGGAGTACATAAC	NA	NA	NA	NA	NA	NA	NA	NA	102240143	102246574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102240389_102240524_102240638_102242636_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
ENSMUST00000113684.8	chr9	-	887	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113684.8	887	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGGGCCAGGCACAGACT	NA	NA	NA	NA	NA	NA	NA	NA	66951015	66935329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUST00000113687.8	chr9	-	962	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113687.8	962	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACTGTACGCTATTCCT	NA	NA	NA	NA	NA	NA	NA	NA	66956425	66935270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_66935450_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
ENSMUST00000113693.8	chr9	-	1054	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113693.8	1054	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAGTTTTTACAATATAT	NA	NA	NA	NA	NA	NA	NA	NA	66956454	66931605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_66931848_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
ENSMUST00000113695.8	chr9	-	1607	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113695.8	1607	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGTGGTCCTGTCGTC	NA	NA	NA	NA	NA	NA	NA	NA	66951084	66929873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUST00000113697.8	chr9	-	1742	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113697.8	1742	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCACATTTAGGACATTTT	NA	NA	NA	NA	NA	NA	NA	NA	66956557	66929896	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
ENSMUST00000113701.8	chr9	-	1677	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113701.8	1677	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGACATTTTCTAAATCTG	NA	NA	NA	NA	NA	NA	NA	NA	66956483	66929887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66955405_66955532_66956300
ENSMUST00000113705.8	chr9	-	1759	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113705.8	1759	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	66956549	66929871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66955405_66955532_66956300
ENSMUST00000113707.9	chr9	-	1898	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113707.9	1898	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	66956688	66929871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
ENSMUST00000113721.8	chr1	-	1451	10	FSM	ENSMUSG00000026171.13	ENSMUST00000113721.8	1451	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAGCCTATGTGGTATGA	NA	NA	NA	NA	NA	NA	NA	NA	74640536	74632911	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_74633562_74633718_74633854_74634367_74634458_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74637952_74638224_74638300_74640483
ENSMUST00000113782.10	chr17	-	803	4	FSM	ENSMUSG00000024436.17	ENSMUST00000113782.10	803	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTCCCTTTGGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	36227281	36221270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_36221849_36222310_36222371_36223229_36223297_36227183
ENSMUST00000113797.4	chrX	-	1676	3	FSM	ENSMUSG00000034403.17	ENSMUST00000113797.4	1676	3	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTATTAAAGTTCTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	98514278	98509751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_98511180_98511728_98511921_98514222
ENSMUST00000113820.9	chr1	+	1439	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113820.9	1439	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	1661	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGAATTTGTTGATTTT	NA	NA	NA	NA	NA	NA	NA	NA	74275655	74307368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_74275770_74275976_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
ENSMUST00000113848.11	chr16	-	2139	10	FSM	ENSMUSG00000040732.21	ENSMUST00000113848.11	2139	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCAAACTGTGAAGATGAC	NA	NA	NA	NA	NA	NA	NA	NA	95331224	95161068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_95162186_95169510_95169559_95170180_95170238_95178159_95178232_95179970_95180052_95180926_95181131_95190752_95190905_95210593_95210812_95325385_95325474_95331122
ENSMUST00000113851.8	chr6	+	1323	10	FSM	ENSMUSG00000034744.14	ENSMUST00000113851.8	1323	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCAGGGTGTCATCTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	83772009	83779536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_83772231_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
ENSMUST00000113888.3	chr6	-	1007	6	FSM	ENSMUSG00000014554.14	ENSMUST00000113888.3	1007	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	NA	NA	NA	NA	NA	NA	NA	83483951	83457198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_83457419_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
ENSMUST00000113895.2	chrX	+	1173	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113895.2	1173	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTGCTTTCTTTACT	NA	NA	NA	NA	NA	NA	NA	NA	93410788	93460699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_93411092_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
ENSMUST00000113896.8	chrX	+	1032	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113896.8	1032	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTGCTTTCTTTACT	NA	NA	NA	NA	NA	NA	NA	NA	93410770	93460699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_93410933_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
ENSMUST00000113904.9	chr5	+	2485	13	FSM	ENSMUSG00000029179.15	ENSMUST00000113904.9	2485	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTCAGTTGTTATTCC	NA	NA	NA	NA	NA	NA	NA	NA	52940395	52982007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462_52976608_52980959
ENSMUST00000113905.8	chr16	-	758	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113905.8	758	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	NA	NA	NA	NA	NA	NA	NA	94171874	94165305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171753
ENSMUST00000113906.9	chr16	-	745	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113906.9	745	5	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	NA	NA	NA	NA	NA	NA	NA	94171571	94165305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171463
ENSMUST00000113936.10	chr6	-	523	4	FSM	ENSMUSG00000030035.15	ENSMUST00000113936.10	1314	4	285	506	0	-114	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTTCCTCCCAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	83098255	83096530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83098183
ENSMUST00000113938.5	chr6	+	695	3	FSM	ENSMUSG00000030037.10	ENSMUST00000113938.5	695	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	83086020	83086920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_83086185_83086294_83086408_83086502
ENSMUST00000113952.10	chr2	+	2429	14	FSM	ENSMUSG00000026917.16	ENSMUST00000113952.10	2890	14	0	461	0	-461	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTCTGCCTTTGCCAAGG	NA	NA	NA	NA	NA	NA	NA	NA	27405168	27426086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_27405293_27408640_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424768
ENSMUST00000113956.10	chr16	-	1692	5	FSM	ENSMUSG00000022952.18	ENSMUST00000113956.10	4738	5	1608	1438	405	304	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTTACATATGTGTTGA	NA	NA	NA	NA	NA	NA	NA	NA	92492608	92401981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_92403013_92410486_92410649_92465595_92465701_92485863_92486021_92492371
ENSMUST00000113970.8	chr19	+	2975	10	FSM	ENSMUSG00000045098.20	ENSMUST00000113970.8	2975	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTCTTGAGTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	3818032	3858835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916_3855054_3857224
ENSMUST00000113975.3	chr16	+	1631	2	FSM	ENSMUSG00000089774.3	ENSMUST00000113975.3	10913	2	0	9282	0	-9282	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACTCCATCTTTAACAGC	NA	NA	NA	NA	NA	NA	NA	NA	91855209	91875079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_91855369_91873607
ENSMUST00000113995.2	chr1	+	2713	7	FSM	ENSMUSG00000026005.16	ENSMUST00000113995.2	2713	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAACTTGAATTCTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	66739989	66758964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_66740177_66740775_66740808_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ENSMUST00000113995.2-0	chr1	+	2319	7	FSM	ENSMUSG00000026005.16	ENSMUST00000113995.2	2713	7	76	318	0	-318	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAATGTACAGTAAAACTA	NA	NA	NA	NA	NA	NA	NA	NA	66740065	66758646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_66740177_66740775_66740808_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ENSMUST00000114004.8	chr2	+	2194	3	FSM	ENSMUSG00000015488.15	ENSMUST00000114004.8	2194	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGTTTCCCATTCAGATT	NA	NA	NA	NA	NA	NA	NA	NA	26899937	26907436	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_26900118_26904104_26904178_26905495
ENSMUST00000114005.9	chr2	+	1286	4	FSM	ENSMUSG00000015488.15	ENSMUST00000114005.9	1286	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTACCTGTTCATCTATT	NA	NA	NA	NA	NA	NA	NA	NA	26899937	26906861	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_26900118_26904104_26904178_26905495_26905622_26905954
ENSMUST00000114007.8	chr2	+	629	5	FSM	ENSMUSG00000015488.15	ENSMUST00000114007.8	2689	5	0	2060	0	-1269	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTGGAGAAGACTGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	26899937	26909041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_26900118_26904104_26904178_26905495_26905622_26908384_26908493_26908899
ENSMUST00000114023.3	chr16	-	1154	10	FSM	ENSMUSG00000058240.15	ENSMUST00000114023.3	1154	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTTTTTCTCTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	91525589	91491225	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_91491554_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUST00000114048.2	chr6	-	623	4	FSM	ENSMUSG00000079523.9	ENSMUST00000114048.2	623	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTGGCATGGTTGGCGTG	NA	NA	NA	NA	NA	NA	NA	NA	72935731	72934343	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_72934636_72934895_72935008_72935319_72935369_72935561
ENSMUST00000114049.2	chr6	-	690	2	FSM	ENSMUSG00000079523.9	ENSMUST00000114049.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGGCGTGGTCTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	72935285	72934335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_72934636_72934895
ENSMUST00000114049.2-0	chr6	-	419	2	FSM	ENSMUSG00000079523.9	ENSMUST00000114049.2	690	2	277	-6	277	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGTGGTCTGAATTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	72935008	72934329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_72934636_72934895
ENSMUST00000114050.8	chr6	-	570	3	FSM	ENSMUSG00000079523.9	ENSMUST00000114050.8	570	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGTGGTCTGAATTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	72935471	72934329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_72934636_72934895_72935008_72935319
ENSMUST00000114066.3	chr5	+	837	7	ISM	ENSMUSG00000039782.16	ENST00000345451.8	3093	10	1469	4980	1469	-4980	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTATCAAAGACAAACCTGT	NA	NA	NA	NA	NA	NA	NA	NA	43392380	43438553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_43392432_43394649_43394932_43401928_43402020_43419076_43419128_43434773_43434945_43435946_43436037_43438452
ENSMUST00000114070.10	chrX	+	632	5	FSM	ENSMUSG00000031197.12	ENSMUST00000114070.10	632	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTCCTTATTAGAAACTT	NA	NA	NA	NA	NA	NA	NA	NA	74557904	74567652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74567441
ENSMUST00000114071.8	chr6	+	1400	10	FSM	ENSMUSG00000056737.15	ENSMUST00000114071.8	1400	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	72526255	72539966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_72526485_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
ENSMUST00000114100.10	chr2	-	2099	9	FSM	ENSMUSG00000026927.18	ENSMUST00000114100.10	2099	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGACTGTCTTGTCATTT	NA	NA	NA	NA	NA	NA	NA	NA	26279303	26272813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278927_26279078_26279160
ENSMUST00000114102.10	chr2	-	2193	10	FSM	ENSMUSG00000026927.18	ENSMUST00000114102.10	2193	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGACTGTCTTGTCATTT	NA	NA	NA	NA	NA	NA	NA	NA	26279328	26272813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278503_26278573_26278927_26279078_26279160
ENSMUST00000114106.8	chr5	+	1504	9	FSM	ENSMUSG00000067367.10	ENSMUST00000114106.8	1504	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCTGTATCTATGATAA	NA	NA	NA	NA	NA	NA	NA	NA	38378021	38391640	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_38378139_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
ENSMUST00000114127.8	chrX	+	3332	10	FSM	ENSMUSG00000004221.17	ENSMUST00000114127.8	3332	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATGGGGGTTTGGGCTTA	NA	NA	NA	NA	NA	NA	NA	NA	73473276	73493892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_73473428_73476410_73476613_73477408_73477621_73480769_73480889_73482512_73482666_73483480_73483557_73486950_73487095_73487377_73487521_73491464_73491527_73491822
ENSMUST00000114134.9	chr2	+	2043	5	FSM	ENSMUSG00000026930.16	ENSMUST00000114134.9	2043	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTCTGTTGGAATT	NA	NA	NA	NA	NA	NA	NA	NA	26220402	26238249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_26220578_26229647_26229719_26234613_26234771_26235162_26235372_26236818
ENSMUST00000114146.8	chrX	-	1902	3	FSM	ENSMUSG00000032806.14	ENSMUST00000114146.8	1902	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCTCGGGTCCCTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	73416852	73412822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_73414618_73416219_73416289_73416814
ENSMUST00000114152.2	chrX	-	746	3	FSM	ENSMUSG00000015289.5	ENSMUST00000114152.2	746	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCAGCCTCTAAATTTT	NA	NA	NA	NA	NA	NA	NA	NA	73397181	73395767	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_73396105_73396450_73396609_73396930
ENSMUST00000114158.9	chr5	+	3051	14	FSM	ENSMUSG00000029121.17	ENSMUST00000114158.9	3051	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTGGGTGTTTTCACT	NA	NA	NA	NA	NA	NA	NA	NA	37399423	37449477	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_37399870_37422575_37422665_37426026_37426212_37430690_37430856_37433620_37433683_37435428_37435510_37436206_37436276_37437002_37437124_37437810_37437968_37440195_37440338_37441371_37441543_37443711_37443892_37446148_37446315_37448460
ENSMUST00000114160.2	chrX	+	1383	13	FSM	ENSMUSG00000001962.9	ENSMUST00000114160.2	1383	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	354	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAAGAACCTGCGCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	73356638	73363755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
ENSMUST00000114178.8	chr6	+	3431	4	FSM	ENSMUSG00000052656.13	ENSMUST00000114178.8	3431	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTTGTAGGTTTCTGATC	NA	NA	NA	NA	NA	NA	NA	NA	71470893	71487865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_71471873_71473814_71473955_71482717_71482834_71485669
ENSMUST00000114180.11	chrX	+	1786	10	FSM	ENSMUSG00000009995.18	ENSMUST00000114180.11	1786	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGTCTTCTGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	73326367	73333754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332053_73332120_73332267_73332321_73332710_73332789_73332904
ENSMUST00000114191.8	chr16	-	742	6	FSM	ENSMUSG00000022890.14	ENSMUST00000114191.8	742	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	NA	NA	NA	NA	NA	NA	NA	84632391	84624758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_84624884_84625312_84625438_84628216_84628396_84630707_84630763_84631696_84631872_84632308
ENSMUST00000114195.8	chr16	+	2960	10	FSM	ENSMUSG00000053062.17	ENSMUST00000114195.8	4370	10	263	1147	0	-1147	multi-exon	TRUE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTTGATTTTATTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	84571273	84621669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613262_84615647_84615664_84618147_84618191_84619674
ENSMUST00000114200.10	chr9	+	1054	5	FSM	ENSMUSG00000032305.16	ENSMUST00000114200.10	3017	5	54	1909	10	-1303	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATCTAACTTAATGATGG	NA	NA	NA	NA	NA	NA	NA	NA	57444899	57448558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_57445118_57445306_57445395_57446093_57446172_57446528_57446578_57447937
ENSMUST00000114218.2	chr16	-	1271	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114218.2	1271	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGGGTTACTCAATCA	NA	NA	NA	NA	NA	NA	NA	NA	78373545	78341848	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373311
ENSMUST00000114228.8	chr6	+	748	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114228.8	748	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCACTTCAGTCAAAAACC	NA	NA	NA	NA	NA	NA	NA	NA	66873406	66994913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_66873512_66891436_66891495_66992708_66992828_66994447
ENSMUST00000114234.2	chr2	-	2151	11	FSM	ENSMUSG00000026942.14	ENSMUST00000114234.2	2151	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGAGTGGTGTTCATC	NA	NA	NA	NA	NA	NA	NA	NA	25436922	25408877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_25409641_25410339_25410489_25414351_25414530_25414878_25415161_25417485_25417561_25418243_25418319_25420298_25420461_25426687_25426787_25427082_25427162_25428856_25429097_25436873
ENSMUST00000114276.3	chr9	+	2024	7	FSM	ENSMUSG00000032320.8	ENSMUST00000114276.3	2024	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTGCACCTGAGACATTT	NA	NA	NA	NA	NA	NA	NA	NA	55949140	55966361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_55949489_55949858_55949965_55952415_55952613_55960190_55960305_55963442_55963540_55964710_55964854_55965342
ENSMUST00000114293.9	chr2	+	1308	6	FSM	ENSMUSG00000026955.14	ENSMUST00000114293.9	1600	6	-9	301	0	-301	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGCACACAGACTTAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	25262332	25266514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_25263011_25264963_25265077_25265696_25265844_25265979_25266088_25266175_25266287_25266363
ENSMUST00000114323.8	chr6	-	1638	4	FSM	ENSMUSG00000059486.12	ENSMUST00000114323.8	3816	4	99	2079	99	-2078	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAATCGGAGGAGATAGT	NA	NA	NA	NA	NA	NA	NA	NA	56774622	56756587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_56757399_56758785_56758952_56766203_56766686_56774443
ENSMUST00000114329.8	chr5	-	1906	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114329.8	1906	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCCTTTCCGTCTTACT	NA	NA	NA	NA	NA	NA	NA	NA	34794536	34790992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794131_34794270
ENSMUST00000114331.10	chr5	-	1754	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114331.10	1754	13	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTCCGTCTTACTATT	NA	NA	NA	NA	NA	NA	NA	NA	34794556	34790989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794442
ENSMUST00000114336.4	chr2	+	1164	4	FSM	ENSMUSG00000048707.10	ENSMUST00000114336.4	2787	4	1623	0	1565	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTTGCCTTCTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	25154252	25159897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_25154566_25158843_25159058_25159144_25159252_25159367
ENSMUST00000114371.5	chr16	-	1150	10	FSM	ENSMUSG00000022748.9	ENSMUST00000114371.5	1150	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACAGTTTCTCTTTCCCCT	NA	NA	NA	NA	NA	NA	NA	NA	57427209	57122362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_57122646_57124042_57124132_57127188_57127277_57127731_57127793_57131615_57131719_57133020_57133081_57136524_57136655_57138268_57138344_57143826_57143907_57427028
ENSMUST00000114390.8	chrX	-	797	8	FSM	ENSMUSG00000031388.15	ENSMUST00000114390.8	797	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACAATAAATGTCACCCAG	NA	NA	NA	NA	NA	NA	NA	NA	72965438	72960525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_72960802_72961448_72961534_72963107_72963147_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUST00000114444.9	chr16	-	2295	5	FSM	ENSMUSG00000071533.12	ENSMUST00000114444.9	2295	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	55850102	55835868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
ENSMUST00000114445.8	chr6	+	1109	5	FSM	ENSMUSG00000029836.16	ENSMUST00000114445.8	1585	5	29	447	0	224	multi-exon	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTGATTTAATAACAAG	NA	NA	NA	NA	NA	NA	NA	NA	51447674	51460237	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_51447715_51448795_51448849_51452210_51452354_51458703_51458799_51459459
ENSMUST00000114446.8	chr6	+	1719	6	FSM	ENSMUSG00000029836.16	ENSMUST00000114446.8	1719	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	51447674	51460684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_51447715_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
ENSMUST00000114449.7	chr5	+	1140	9	FSM	ENSMUSG00000079562.8	ENSMUST00000114449.7	2193	9	56	997	-8	-964	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTGCCCAAGAACCAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	33492908	33529643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_33492990_33515783_33515967_33517695_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33527909_33528957_33529154_33529610
ENSMUST00000114472.8	chrX	-	1532	12	FSM	ENSMUSG00000002012.14	ENSMUST00000114472.8	1532	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTCTGGTGCTGAACTGG	NA	NA	NA	NA	NA	NA	NA	NA	72703723	72699600	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703624
ENSMUST00000114482.3	chr2	+	1986	4	FSM	ENSMUSG00000026981.16	ENSMUST00000114482.3	1986	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTTGTTAGTTGTGAACA	NA	NA	NA	NA	NA	NA	NA	NA	24235321	24240948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_24235584_24237477_24237567_24238527_24238641_24239426
ENSMUST00000114550.8	chrX	-	1124	5	FSM	ENSMUSG00000031347.13	ENSMUST00000114550.8	1124	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTCATTCTTTAAAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	71961599	71957309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293_71960453_71961491
ENSMUST00000114551.10	chrX	-	1286	5	FSM	ENSMUSG00000031347.13	ENSMUST00000114551.10	1286	5	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTTGTGGATTTTTACA	NA	NA	NA	NA	NA	NA	NA	NA	71962017	71957137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293_71960453_71961919
ENSMUST00000114576.9	chrX	+	1737	3	FSM	ENSMUSG00000073131.13	ENSMUST00000114576.9	4195	3	55	2403	23	-2403	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTACATGGCACCCATAAGC	NA	NA	NA	NA	NA	NA	NA	NA	70860418	70865909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_70860547_70863673_70863784_70864410
ENSMUST00000114582.9	chrX	+	1743	5	FSM	ENSMUSG00000015217.12	ENSMUST00000114582.9	1743	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	70599533	70604282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_70599797_70601658_70601814_70602038_70602179_70602703_70602879_70603272
ENSMUST00000114606.8	chr2	+	5284	13	FSM	ENSMUSG00000036617.18	ENSMUST00000114606.8	5284	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTGTACCTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	20742124	20815165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_20742367_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20812712
ENSMUST00000114709.3	chr1	+	3570	10	FSM	ENSMUSG00000041684.12	ENSMUST00000114709.3	3570	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATTTTTGTGGTTCAGGC	NA	NA	NA	NA	NA	NA	NA	NA	44159127	44183930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_44159435_44165425_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
ENSMUST00000114715.8	chr2	-	1582	11	FSM	ENSMUSG00000026707.16	ENSMUST00000114715.8	1582	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGGGGCTTTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	15059684	15001106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_15001358_15002977_15003104_15014220_15014370_15017950_15018096_15034839_15034960_15041085_15041168_15042884_15043039_15044543_15044654_15047037_15047118_15051958_15052115_15059475
ENSMUST00000114741.4	chr18	+	2267	15	FSM	ENSMUSG00000025429.10	ENSMUST00000114741.4	2267	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGACTAAGTTGTGGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	77882244	77970579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_77882451_77922824_77922926_77934078_77934157_77935803_77935839_77942497_77942605_77949546_77949610_77958046_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77969501
ENSMUST00000114748.2	chr18	+	2127	12	FSM	ENSMUSG00000025428.16	ENSMUST00000114748.2	2674	12	36	511	2	-152	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCTTGGCTGGGTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	77861691	77870055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_77862244_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
ENSMUST00000114753.8	chr2	-	993	7	FSM	ENSMUSG00000063275.16	ENSMUST00000114753.8	993	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGCATTGTTTCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	14060831	14031641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_14031818_14040589_14040769_14045644_14045767_14049593_14049683_14049758_14049778_14049948_14050067_14060541
ENSMUST00000114765.4	chr1	+	2716	5	FSM	ENSMUSG00000079588.4	ENSMUST00000114765.4	2716	5	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGGTTGCCCTTATTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	40844760	40896047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_40845048_40845258_40845359_40846781_40846881_40877457_40877596_40893955
ENSMUST00000114772.9	chrX	+	1347	6	FSM	ENSMUSG00000023092.17	ENSMUST00000114772.9	2283	6	0	936	0	169	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGCAGCGGCTGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	55825082	55837764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_55825155_55833348_55833531_55834503_55834679_55835236_55835407_55835823_55836011_55837203
ENSMUST00000114779.9	chr6	+	750	7	FSM	ENSMUSG00000029911.15	ENSMUST00000114779.9	4398	7	0	3648	0	57	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAAGCCTGTCATTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	40448285	40457986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_40448394_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUST00000114783.6	chr5	+	2045	16	FSM	ENSMUSG00000059447.14	ENSMUST00000114783.6	2045	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGACTGTTCGTAGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	30360269	30389580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_30360385_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
ENSMUST00000114786.8	chr5	+	2048	16	FSM	ENSMUSG00000059447.14	ENSMUST00000114786.8	2048	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCGTAGTCTCGTTATTA	NA	NA	NA	NA	NA	NA	NA	NA	30360269	30389587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_30360381_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
ENSMUST00000114795.3	chr1	+	4832	11	FSM	ENSMUSG00000026072.13	ENSMUST00000114795.3	4832	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTTGCTCTGTCCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	40305745	40355361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_40306042_40321392_40321457_40332279_40332518_40332617_40332808_40333917_40334087_40337068_40337135_40339919_40340038_40341437_40341590_40349445_40349590_40351506_40351675_40352134
ENSMUST00000114797.2	chr6	-	500	3	FSM	ENSMUSG00000029918.10	ENSMUST00000114797.2	500	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTGTTTAAGATTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	39787819	39779125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_39779479_39782420_39782546_39787797
ENSMUST00000114810.2	chrX	-	984	8	FSM	ENSMUSG00000054626.12	ENSMUST00000114810.2	984	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	52799663	52785714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798188_52799598
ENSMUST00000114818.9	chr9	+	931	3	FSM	ENSMUSG00000079592.10	ENSMUST00000114818.9	1337	3	101	305	61	-305	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGGAGGGCTGGCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	44018671	44020176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_44018759_44019009_44019269_44019591
ENSMUST00000114821.9	chr9	+	830	3	FSM	ENSMUSG00000079592.10	ENSMUST00000114821.9	1365	3	47	488	-13	-487	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCAGGTGGGCGTGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	44018597	44019994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_44018759_44019002_44019269_44019591
ENSMUST00000114822.2	chr6	-	751	3	FSM	ENSMUSG00000029922.16	ENSMUST00000114822.2	751	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCCGAATGCTGTCCC	NA	NA	NA	NA	NA	NA	NA	NA	39397232	39382472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_39382895_39387021_39387151_39397032
ENSMUST00000114839.8	chr5	+	1605	8	FSM	ENSMUSG00000029131.15	ENSMUST00000114839.8	1605	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTCTTGTGTCTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	29940937	29972101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
ENSMUST00000114881.9	chr17	-	644	6	FSM	ENSMUSG00000052146.17	ENSMUST00000114881.9	644	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTCCACTTGTGTATGTT	NA	NA	NA	NA	NA	NA	NA	NA	27855643	27849397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27855538
ENSMUST00000114893.8	chrX	-	2671	11	FSM	ENSMUSG00000031111.17	ENSMUST00000114893.8	2671	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGGTAGTGGTCTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	48877120	48871412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_48871830_48871976_48872101_48872488_48872768_48872898_48873187_48873382_48873671_48873848_48874137_48874864_48875153_48875735_48876015_48876234_48876526_48876909_48876943_48877024
ENSMUST00000114923.3	chr2	-	529	4	FSM	ENSMUSG00000002107.19	ENSMUST00000114923.3	529	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACACGCTGGCCCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	7086018	6668813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_6669009_6726227_6726425_6967189_6967226_7085917
ENSMUST00000114925.10	chr1	+	1094	6	FSM	ENSMUSG00000026111.16	ENSMUST00000114925.10	1094	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGTGACTGTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	37469219	37478065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_37469364_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ENSMUST00000114935.9	chr17	-	662	6	FSM	ENSMUSG00000024194.17	ENSMUST00000114935.9	662	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	NA	NA	NA	NA	NA	NA	NA	NA	27158517	27156946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158424
ENSMUST00000114945.9	chrX	-	2221	16	FSM	ENSMUSG00000036932.15	ENSMUST00000114945.9	2221	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	47602436	47563820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47592459_47592591_47602112
ENSMUST00000114975.8	chr5	-	2205	12	FSM	ENSMUSG00000028944.15	ENSMUST00000114975.8	2205	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTTTTTATGTATATGA	NA	NA	NA	NA	NA	NA	NA	NA	25113467	25067745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320
ENSMUST00000114996.8	chr2	-	2614	14	FSM	ENSMUSG00000026672.12	ENSMUST00000114996.8	2614	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTATCTGATTTATT	NA	NA	NA	NA	NA	NA	NA	NA	5068856	5025452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797_5051011_5057798_5058002_5059350_5059528_5068717
ENSMUST00000115078.8	chr16	+	500	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115078.8	500	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCACATCTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	32876896	32880535	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_32876988_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUST00000115098.7	chr5	-	3193	11	FSM	ENSMUSG00000038319.15	ENSMUST00000115098.7	3193	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCACCTGCTGTATCTC	NA	NA	NA	NA	NA	NA	NA	NA	24534589	24524586	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_24525148_24526242_24526421_24526633_24526821_24526943_24527220_24527652_24527753_24528068_24528263_24529330_24529584_24529953_24530154_24530491_24530880_24531346_24531776_24534162
ENSMUST00000115110.5	chr9	-	1313	4	FSM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	87	573	87	-573	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCTGGTGAAGATCATAG	NA	NA	NA	NA	NA	NA	NA	NA	35481607	35472688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_35473401_35475358_35475474_35479750_35479802_35481172
ENSMUST00000115120.9	chr16	+	2796	7	FSM	ENSMUSG00000022791.20	ENSMUST00000115120.9	2796	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCGCGTGCCCGCCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	32491971	32502311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_32492099_32494339_32494535_32496711_32496804_32498276_32499626_32499717_32499814_32499969_32500098_32501502
ENSMUST00000115130.3	chr6	-	485	3	FSM	ENSMUSG00000029790.17	ENSMUST00000115130.3	485	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTATTCCAGACATCTTA	NA	NA	NA	NA	NA	NA	NA	NA	30693699	30679086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_30679444_30680129_30680194_30693635
ENSMUST00000115161.8	chr1	-	2231	6	FSM	ENSMUSG00000042182.17	ENSMUST00000115161.8	2231	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACTTTCTTATGGTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	33946849	33891132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_33892449_33901734_33901855_33902822_33903016_33903603_33903825_33917340_33917519_33946646
ENSMUST00000115168.9	chr16	+	1334	4	FSM	ENSMUSG00000035790.16	ENSMUST00000115168.9	1718	4	0	384	0	-366	multi-exon	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGACTCTATGTGCATTA	NA	NA	NA	NA	NA	NA	NA	NA	31918617	31926503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_31918930_31921784_31921863_31922701_31922866_31925723
ENSMUST00000115193.8	chr5	-	2416	16	FSM	ENSMUSG00000029014.15	ENSMUST00000115193.8	2416	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGGAATTATAGTCATCA	NA	NA	NA	NA	NA	NA	NA	NA	21990182	21962269	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
ENSMUST00000115209.8	chr6	+	2406	11	FSM	ENSMUSG00000058440.15	ENSMUST00000115209.8	2406	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCAGTCCTGTTACAAACT	NA	NA	NA	NA	NA	NA	NA	NA	30048065	30152517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_30048113_30089916_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
ENSMUST00000115233.2	chr16	-	958	5	FSM	ENSMUSG00000047714.15	ENSMUST00000115233.2	958	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTGCTTTGTTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	31093810	31076792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
ENSMUST00000115246.9	chr18	+	1484	10	FSM	ENSMUSG00000024576.15	ENSMUST00000115246.9	1484	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTGTATTGTAACTTAT	NA	NA	NA	NA	NA	NA	NA	NA	61688388	61715187	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61715106
ENSMUST00000115249.10	chrX	-	1145	7	FSM	ENSMUSG00000006423.16	ENSMUST00000115249.10	1145	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTACAGAGTCGGGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	36127891	36087389	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_36087823_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
ENSMUST00000115259.3	chr5	+	881	2	FSM	ENSMUSG00000045435.10	ENSMUST00000115259.3	1147	2	0	266	0	-266	multi-exon	FALSE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTTGGATATAATGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	21087188	21091602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_21087654_21091186
ENSMUST00000115342.10	chrX	+	883	6	FSM	ENSMUSG00000001131.12	ENSMUST00000115342.10	883	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATATTTCTGTATAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	20736404	20740972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_20736564_20737272_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
ENSMUST00000115371.9	chr17	+	900	7	FSM	ENSMUSG00000034681.18	ENSMUST00000115371.9	1646	7	29	717	0	-77	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGATAAGCAGGGACATTGA	NA	NA	NA	NA	NA	NA	NA	NA	24633648	24644152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_24633709_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUST00000115389.8	chr6	+	1831	12	FSM	ENSMUSG00000029670.13	ENSMUST00000115389.8	2546	12	28	687	28	-687	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAATAAGCTTTGTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	21949683	21974215	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_21949793_21950036_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968916_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
ENSMUST00000115414.3	chr9	+	3606	18	FSM	ENSMUSG00000032178.15	ENSMUST00000115414.3	3606	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTACTTGAGTCTTCATTCA	NA	NA	NA	NA	NA	NA	NA	NA	21279298	21313099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747
ENSMUST00000115419.8	chr6	+	2194	16	FSM	ENSMUSG00000029534.18	ENSMUST00000115419.8	2194	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCTGTGTCGTCTTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	17693992	17943021	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_17694362_17819248_17819332_17834615_17834776_17844907_17844963_17846197_17846314_17848002_17848079_17850355_17850425_17852256_17852412_17854929_17855028_17886002_17886118_17904895_17904969_17906406_17906510_17921987_17922124_17930764_17930858_17934117_17934258_17942668
ENSMUST00000115437.4	chr16	-	2416	6	FSM	ENSMUSG00000022847.16	ENSMUST00000115437.4	2416	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAACCCGAGTCTCAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	20553261	20543203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_20544833_20545055_20545224_20547131_20547219_20547468_20547597_20547813_20547968_20553011
ENSMUST00000115452.8	chr5	-	1567	14	FSM	ENSMUSG00000028926.16	ENSMUST00000115452.8	1567	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAATCAATCAATAA	NA	NA	NA	NA	NA	NA	NA	NA	5316165	4856692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_4856732_4938836_4938981_4944027_4944168_4972126_4972176_4999531_4999596_5060832_5060927_5086425_5086547_5142957_5143082_5153791_5153855_5185318_5185414_5245277_5245358_5277163_5277259_5298982_5299229_5315952
ENSMUST00000115453.2	chr6	+	1498	2	FSM	ENSMUSG00000007655.17	ENSMUST00000115453.2	2746	2	83	1165	83	-142	multi-exon	FALSE	canonical	NA	NA	NA	NA	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGCAGACAAATGGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	17307721	17340286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_17308045_17339111
ENSMUST00000115467.11	chr6	+	2440	7	FSM	ENSMUSG00000029552.20	ENSMUST00000115467.11	2440	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2285	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATTGTCTTTCTATGTC	NA	NA	NA	NA	NA	NA	NA	NA	17065147	17105822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_17065313_17086135_17086222_17096126_17096380_17097259_17097590_17099702_17099919_17100280_17100440_17104591
ENSMUST00000115472.8	chr6	+	2687	17	FSM	ENSMUSG00000029563.17	ENSMUST00000115472.8	2687	17	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGATTTTCTTGGGAAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	15185504	15438303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_15185817_15196949_15197128_15286679_15286770_15376687_15376826_15377949_15378088_15379651_15379827_15394638_15394853_15396737_15396843_15403815_15403904_15405557_15405642_15409739_15409942_15411024_15411102_15411240_15411343_15413799_15413922_15415033_15415104_15415868_15416033_15437875
ENSMUST00000115489.8	chr17	-	1083	13	FSM	ENSMUSG00000041319.15	ENSMUST00000115489.8	1083	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTATTTCAGGAGCTAGA	NA	NA	NA	NA	NA	NA	NA	NA	23892579	23887770	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892492
ENSMUST00000115490.9	chr17	-	1431	14	FSM	ENSMUSG00000041319.15	ENSMUST00000115490.9	1431	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTTGCATTTTATTCC	NA	NA	NA	NA	NA	NA	NA	NA	23892845	23887592	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892814
ENSMUST00000115520.8	chr6	-	1876	15	FSM	ENSMUSG00000062995.13	ENSMUST00000115520.8	1876	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTCACTCCTGTTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	8778439	8630526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_8630798_8643972_8644243_8653496_8653536_8653629_8653693_8656361_8656409_8658219_8658315_8670693_8670793_8672297_8672424_8737016_8737216_8742254_8742379_8749694_8749768_8754588_8754752_8758365_8758459_8775783_8775931_8778372
ENSMUST00000115522.10	chr16	+	856	3	FSM	ENSMUSG00000115219.3	ENSMUST00000115522.10	1134	3	32	246	24	-104	multi-exon	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTGGGTACTCAAATCCA	NA	NA	NA	NA	NA	NA	NA	NA	20430374	20437515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_20430571_20436375_20436660_20437139
ENSMUST00000115524.8	chrX	+	269	2	FSM	ENSMUSG00000008035.13	ENSMUST00000115524.8	2022	2	83	1670	83	-1662	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGCCAAAGATAAGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	10583711	10584259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_10583944_10584222
ENSMUST00000115534.8	chrX	-	2795	17	FSM	ENSMUSG00000031174.18	ENSMUST00000115534.8	2795	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	10082692	10024454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082454
ENSMUST00000115567.8	chr18	-	6436	9	FSM	ENSMUSG00000024431.16	ENSMUST00000115567.8	6436	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTTTCATAGAACTTGT	NA	NA	NA	NA	NA	NA	NA	NA	39623727	39543597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561669_39561834_39619050_39620299_39623620
ENSMUST00000115571.8	chr18	-	6327	8	FSM	ENSMUSG00000024431.16	ENSMUST00000115571.8	6327	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTTTTCATAGAACTT	NA	NA	NA	NA	NA	NA	NA	NA	39620298	39543599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561669_39561834_39619050
ENSMUST00000115571.8-0	chr18	-	4801	8	FSM	ENSMUSG00000024431.16	ENSMUST00000115571.8	6327	8	0	1526	0	-86	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTTATATGGTTAAACCC	NA	NA	NA	NA	NA	NA	NA	NA	39620298	39545125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561669_39561834_39619050
ENSMUST00000115576.3	chr17	+	2451	6	FSM	ENSMUSG00000047786.13	ENSMUST00000115576.3	3116	6	0	665	0	-665	multi-exon	FALSE	canonical	NA	NA	NA	NA	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTTAACACTGCACTGT	NA	NA	NA	NA	NA	NA	NA	NA	17622933	17678984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_17623289_17647417_17647582_17663909_17664051_17666229_17666326_17674521_17674600_17677367
ENSMUST00000115577.9	chr6	-	1776	12	FSM	ENSMUSG00000004631.16	ENSMUST00000115577.9	1776	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGTAAAATTTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	4747176	4674349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_4674633_4678066_4678111_4689578_4689768_4690468_4690496_4691428_4691641_4694021_4694185_4707073_4707273_4711307_4711381_4717920_4718079_4719373_4719497_4730005_4730114_4746979
ENSMUST00000115579.8	chr6	-	1696	11	FSM	ENSMUSG00000004631.16	ENSMUST00000115579.8	1696	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGTAAAATTTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	4747204	4674349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_4674633_4678066_4678111_4689578_4689768_4690468_4690496_4691428_4691641_4694021_4694185_4707073_4707273_4711307_4711381_4717920_4718079_4719373_4719497_4746979
ENSMUST00000115606.9	chr16	+	1905	18	FSM	ENSMUSG00000075704.18	ENSMUST00000115606.9	1905	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGCGTGTGCTGTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	18245166	18297823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773_18274949_18287499_18287637_18290903_18291000_18291543_18291637_18293431_18293504_18294271_18294370_18296400_18296608_18297607
ENSMUST00000115609.10	chr16	-	815	5	FSM	ENSMUSG00000000326.14	ENSMUST00000115609.10	1866	5	384	667	136	-389	multi-exon	TRUE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACACTACAGCTCATACCT	NA	NA	NA	NA	NA	NA	NA	NA	18245218	18226682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
ENSMUST00000115615.9	chrX	-	1183	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115615.9	1183	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGATAATGCTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	8011962	8008599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_8009195_8009485_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUST00000115616.8	chrX	-	1225	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115616.8	1225	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATCAATACTGATAATG	NA	NA	NA	NA	NA	NA	NA	NA	8012012	8008606	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_8009195_8009489_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUST00000115617.10	chrX	-	1152	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115617.10	1152	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATCAATACTGATAATG	NA	NA	NA	NA	NA	NA	NA	NA	8011935	8008606	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_8009195_8009485_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUST00000115621.9	chrX	-	1338	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115621.9	1338	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATAATGCTTTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	8012119	8008597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUST00000115637.8	chrX	-	2778	6	FSM	ENSMUSG00000039231.19	ENSMUST00000115637.8	2778	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCTTGAGATTTGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	7940497	7927673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826_7937490_7938561_7938708_7940354
ENSMUST00000115645.10	chr16	-	1085	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCTGACAAGGCTATGTG	NA	NA	NA	NA	NA	NA	NA	NA	18066596	18057647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
ENSMUST00000115655.8	chrX	-	1148	7	FSM	ENSMUSG00000031157.11	ENSMUST00000115655.8	1148	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTGTTGTTTGTAAACA	NA	NA	NA	NA	NA	NA	NA	NA	7765218	7760821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765009
ENSMUST00000115663.10	chrX	+	1527	5	FSM	ENSMUSG00000031156.19	ENSMUST00000115663.10	1527	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGTTGGAAAGCCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	7750482	7760703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758378_7759107_7760429
ENSMUST00000115689.10	chrX	+	1568	11	FSM	ENSMUSG00000039382.13	ENSMUST00000115689.10	1568	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGGTGGGGCGTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	7588487	7594440	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_7588618_7590091_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ENSMUST00000115728.5	chr18	-	2299	8	FSM	ENSMUSG00000024349.11	ENSMUST00000115728.5	2299	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTGGCCTAGTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	35873607	35866733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_35867752_35868155_35868343_35868931_35869171_35871733_35871843_35872092_35872274_35872403_35872631_35872977_35873068_35873359
ENSMUST00000115765.2	chr18	-	3869	21	FSM	ENSMUSG00000003778.15	ENSMUST00000115765.2	3869	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAAAAGAATAA	NA	NA	NA	NA	NA	NA	NA	NA	34757654	34734227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ENSMUST00000115777.10	chr16	-	4207	4	FSM	ENSMUSG00000022674.16	ENSMUST00000115777.10	4207	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTTTGTGTGTGCCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	15412388	15370540	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_15374408_15394878_15395005_15398922_15399072_15412323
ENSMUST00000115802.2	chr16	-	2466	14	FSM	ENSMUSG00000022680.15	ENSMUST00000115802.2	2466	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGGCACTAATAATTTTG	NA	NA	NA	NA	NA	NA	NA	NA	13720995	13667140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_13668271_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
ENSMUST00000115854.4	chr16	+	2505	11	FSM	ENSMUSG00000004069.18	ENSMUST00000115854.4	2505	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	4501959	4525559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4524431
ENSMUST00000115860.8	chr16	+	2303	7	FSM	ENSMUSG00000005982.15	ENSMUST00000115860.8	2303	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGTCTCTAGTTATTGG	NA	NA	NA	NA	NA	NA	NA	NA	3702632	3722633	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_3702711_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646_3719990_3721329
ENSMUST00000115995.4	chr19	+	3687	12	FSM	ENSMUSG00000024664.6	ENSMUST00000115995.4	3687	12	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCCTGCCTTTAGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	10018932	10037474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_10019321_10029565_10029677_10030199_10030398_10031383_10031486_10031590_10031714_10031969_10032031_10032470_10032548_10032960_10033059_10033354_10033452_10033580_10033661_10033788_10033915_10035248
ENSMUST00000116115.3	chr3	+	425	1	FSM	ENSMUSG00000100755.2	ENSMUST00000116115.3	425	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	508	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCATAAAATTTGACAATGG	NA	NA	NA	NA	NA	NA	NA	NA	37768888	37769313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_37768900_37769300
ENSMUST00000116234.9	chr10	+	2080	6	FSM	ENSMUSG00000060904.15	ENSMUST00000116234.9	2080	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3632	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGATGTCTTTAGTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	88566929	88579956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884
ENSMUST00000116280.9	chr7	-	1984	5	FSM	ENSMUSG00000030980.18	ENSMUST00000116280.9	5382	5	226	3172	-159	107	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCCCTTATCAGGAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	118454995	118444616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118451625_118452564_118454845
ENSMUST00000116318.3	chr11	+	799	5	FSM	ENSMUSG00000075410.14	ENSMUST00000116318.3	799	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTGTAAAGACTGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	116547933	116559213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_116548134_116548363_116548433_116550123_116550203_116550558_116550654_116558857
ENSMUST00000116358.8	chr11	+	1159	11	FSM	ENSMUSG00000023170.15	ENSMUST00000116358.8	1159	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATGCCTGAGTGCTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	69804875	69807416	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69804897_69805098_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
ENSMUST00000116389.9	chr2	+	1759	9	FSM	ENSMUSG00000027593.16	ENSMUST00000116389.9	1759	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTGCTTGTTTATTTTG	NA	NA	NA	NA	NA	NA	NA	NA	154633029	154709181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_154633469_154699188_154699454_154701597_154701671_154701830_154701879_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ENSMUST00000116400.4	chr15	-	2324	10	FSM	ENSMUSG00000022992.18	ENSMUST00000116400.4	2324	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATCTGGATCGATTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	98432125	98416688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_98417429_98418198_98418307_98422441_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
ENSMUST00000116412.8	chr8	+	2310	15	FSM	ENSMUSG00000049482.17	ENSMUST00000116412.8	3066	15	66	690	66	-690	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCGATGACCCACCACTC	NA	NA	NA	NA	NA	NA	NA	NA	123202947	123209141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207824_123207964_123208069_123208137_123208209_123208269_123208334
ENSMUST00000116415.9	chr8	-	1520	9	FSM	ENSMUSG00000031816.16	ENSMUST00000116415.9	1520	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTGTATGTTTGTGTAAA	NA	NA	NA	NA	NA	NA	NA	NA	121835066	121824291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_121824665_121825446_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832456_121832571_121833608_121833713_121835026
ENSMUST00000116420.4	chr12	-	2066	5	FSM	ENSMUSG00000034442.12	ENSMUST00000116420.4	2066	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTAATTCAAGGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	73333483	73326784	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408_73332050_73333457
ENSMUST00000116440.9	chr15	-	896	7	FSM	ENSMUSG00000055762.17	ENSMUST00000116440.9	896	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	NA	NA	NA	NA	NA	NA	NA	75781146	75767336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772980_75773102_75781093
ENSMUST00000116456.10	chr5	+	1867	13	FSM	ENSMUSG00000018001.19	ENSMUST00000116456.10	3738	13	54	1817	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCTATATATGCAGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	143608255	143694188	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_143608429_143670150_143670234_143672227_143672293_143672732_143672800_143678302_143678422_143683470_143683552_143687073_143687187_143687351_143687501_143688568_143688681_143692838_143692916_143692993_143693066_143693149_143693305_143693587
ENSMUST00000116457.9	chr2	-	1683	10	FSM	ENSMUSG00000027215.14	ENSMUST00000116457.9	1683	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATCCAGTCTGAAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	93293291	93249460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93273713_93273790_93293254
ENSMUST00000116492.3	chr9	+	2111	16	FSM	ENSMUSG00000009741.16	ENSMUST00000116492.3	2111	16	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGAGGGAGCGCTCCCATC	NA	NA	NA	NA	NA	NA	NA	NA	113760631	113805885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413_113804646_113805573
ENSMUST00000116495.8	chrX	+	1613	5	FSM	ENSMUSG00000079317.11	ENSMUST00000116495.8	1613	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTCATTTGATGCC	NA	NA	NA	NA	NA	NA	NA	NA	165223569	165236136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_165223836_165229786_165229899_165232783_165232929_165233624_165233711_165235132
ENSMUST00000116542.9	chr19	-	2100	2	FSM	ENSMUSG00000024742.16	ENSMUST00000116542.9	2100	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	NA	NA	NA	NA	NA	NA	NA	NA	10181307	10176501	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_10178462_10181167
ENSMUST00000116551.10	chr19	+	985	4	FSM	ENSMUSG00000038812.17	ENSMUST00000116551.10	985	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	6887114	6888396	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_6887631_6887730_6887833_6887951_6888042_6888119
ENSMUST00000116551.10-0	chr19	+	791	4	FSM	ENSMUSG00000038812.17	ENSMUST00000116551.10	985	4	0	194	0	-194	multi-exon	FALSE	canonical	NA	NA	NA	NA	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGATGAGGAGACTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	6887114	6888202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_6887631_6887730_6887833_6887951_6888042_6888119
ENSMUST00000116558.3	chr19	-	1189	2	FSM	ENSMUSG00000024939.7	ENSMUST00000116558.3	1189	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGATTGCCTGGTTAATT	NA	NA	NA	NA	NA	NA	NA	NA	5779661	5778114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5778907_5779264
ENSMUST00000116558.3-0	chr19	-	2175	2	FSM	ENSMUSG00000024939.7_ENSMUSG00000079478.10	ENSMUST00000116558.3	1189	2	-1080	94	880	-94	multi-exon	FALSE	canonical	NA	NA	NA	NA	385	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACCCACGACCAGAAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	5780741	5778208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5778907_5779264
ENSMUST00000116560.3	chr19	+	1148	6	FSM	ENSMUSG00000056201.9	ENSMUST00000116560.3	1148	6	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATGGCTTTTGGGTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	5540512	5544057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408_5543519_5543520_5543527_5543528
ENSMUST00000116567.4	chr19	+	969	10	FSM	ENSMUSG00000080268.5	ENSMUST00000116567.4	1388	10	33	386	33	-382	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACCCTCTGCCACCACTG	NA	NA	NA	NA	NA	NA	NA	NA	5091414	5099559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5091519_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
ENSMUST00000116621.2	chrX	-	908	3	FSM	ENSMUSG00000031059.10	ENSMUST00000116621.2	908	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	20483858	20481564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_20481782_20481952_20482084_20483298
ENSMUST00000116621.2-0	chrX	-	810	3	FSM	ENSMUSG00000031059.10	ENSMUST00000116621.2	908	3	98	0	98	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	20483760	20481564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_20481782_20481952_20482084_20483298
ENSMUST00000116641.9	chr17	+	1858	11	FSM	ENSMUSG00000002279.20	ENSMUST00000116641.9	1858	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGCCTCCTGTCTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	25798150	25881800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_25798354_25804516_25804827_25807649_25807661_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
ENSMUST00000116706.3	chr12	-	82	1	FSM	ENSMUSG00000080356.3	ENSMUST00000116706.3	82	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACCTTCGCGAACTCGG	NA	NA	NA	NA	NA	NA	NA	NA	110244563	110244481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_110244500_110244600
ENSMUST00000116923.3	chr11	-	120	1	FSM	ENSMUSG00000080573.3	ENSMUST00000116923.3	120	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACATTTTGATGTTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	69526345	69526225	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_69526200_69526300
ENSMUST00000117045.2	chr6	-	342	1	FSM	ENSMUSG00000082691.7	ENSMUST00000117045.2	342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTTGCCAGCCTCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	135326747	135326405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_135326400_135326700
ENSMUST00000117071.2	chr4	+	859	1	FSM	ENSMUSG00000083087.2	ENSMUST00000117071.2	859	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	67849117	67849976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_67849100_67850000
ENSMUST00000117073.2	chr7	-	2209	15	NNC	ENSMUSG00000030849.19	novel	2463	17	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAATGTGTCTTCCTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	129863587	129765688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_129765948_129769432_129769539_129771468_129771607_129773341_129773413_129774546_129774670_129779404_129779596_129782094_129782206_129784370_129784493_129786958_129787111_129797907_129798105_129800148_129800294_129802712_129802904_129820727_129820852_129830352_129830523_129863478
ENSMUST00000117082.2	chr16	-	2987	10	FSM	ENSMUSG00000003166.21	ENSMUST00000117082.2	2987	10	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGACTCCTGTGCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	17709457	17659173	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676444_17677267_17677388_17690426_17690550_17709249
ENSMUST00000117083.2	chr9	-	1999	13	FSM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCTAGGTCATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	65792338	65740437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
ENSMUST00000117085.2	chr7	-	1788	3	FSM	ENSMUSG00000038459.11	ENSMUST00000117085.2	2238	3	223	227	223	-227	multi-exon	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTACACTAACTTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	83800878	83758790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_83760010_83763458_83763639_83800489
ENSMUST00000117087.2	chr11	-	329	1	FSM	ENSMUSG00000082550.2	ENSMUST00000117087.2	329	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTAGAAGCGCCTGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	76999006	76998677	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_76998700_76999000
ENSMUST00000117119.2	chrX	+	347	1	FSM	ENSMUSG00000083411.4	ENSMUST00000117119.2	347	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAATAAAGTTTTCCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	70847293	70847640	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_70847300_70847600
ENSMUST00000117121.2	chr1	+	892	1	FSM	ENSMUSG00000083064.2	ENSMUST00000117121.2	892	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGCCCCTTGTTGGCAC	NA	NA	NA	NA	NA	NA	NA	NA	91223766	91224658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_91223800_91224700
ENSMUST00000117131.2	chrX	+	1214	1	FSM	ENSMUSG00000084131.2	ENSMUST00000117131.2	1214	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGGACCACTTTGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	73214258	73215472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_73214300_73215500
ENSMUST00000117146.9	chr1	-	2181	6	FSM	ENSMUSG00000025939.20	ENSMUST00000117146.9	2181	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	571	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGTTTCTATGACAATG	NA	NA	NA	NA	NA	NA	NA	NA	16689713	16640005	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_16641507_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
ENSMUST00000117165.3	chr5	+	730	1	FSM	ENSMUSG00000087034.5	ENSMUST00000117165.3	730	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTTTCTTGAAAACAAAACA	NA	NA	NA	NA	NA	NA	NA	NA	60388825	60389555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_60388800_60389600
ENSMUST00000117187.2	chr7	+	264	1	FSM	ENSMUSG00000074092.6	ENSMUST00000117187.2	264	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGGGGCTAGGCACCCA	NA	NA	NA	NA	NA	NA	NA	NA	52405212	52405476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_52405200_52405500
ENSMUST00000117207.2	chr2	-	597	1	FSM	ENSMUSG00000081476.2	ENSMUST00000117207.2	597	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGGTAGGGGCTAGT	NA	NA	NA	NA	NA	NA	NA	NA	94215443	94214846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_94214800_94215400
ENSMUST00000117217.8	chr12	-	3549	11	FSM	ENSMUSG00000021224.16	ENSMUST00000117217.8	3549	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTATAGTTCTGTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	83968708	83840807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_83842929_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83878695_83878771_83888991_83889133_83902213_83902299_83923441_83923587_83968591
ENSMUST00000117236.8	chr14	+	2538	15	FSM	ENSMUSG00000022214.16	ENSMUST00000117236.8	2538	15	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGTCTGTGTCACTTT	NA	NA	NA	NA	NA	NA	NA	NA	55797462	55807522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_55797579_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ENSMUST00000117245.2	chr1	+	4361	18	FSM	ENSMUSG00000026510.11	ENSMUST00000117245.2	4361	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTATTTCCTGGTTTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	182236736	182289997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_182237016_182256458_182256607_182259123_182259238_182262916_182263000_182264462_182264565_182268401_182268577_182269186_182269369_182269697_182269863_182270197_182270427_182271889_182271998_182272225_182272375_182273838_182274302_182275965_182276745_182280219_182280358_182281262_182281397_182283261_182283429_182286324_182286525_182289251
ENSMUST00000117278.8	chr3	+	2593	11	FSM	ENSMUSG00000032657.16	ENSMUST00000117278.8	2593	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTTTGGAGTATTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	89090939	89096595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89091256_89091719_89091831_89091936_89092057_89092195_89092304_89092740_89092917_89093040_89093141_89094085_89094156_89094365_89094912_89095382_89095452_89095529_89095784_89095872
ENSMUST00000117288.2	chr1	+	531	1	FSM	ENSMUSG00000081051.5	ENSMUST00000117288.2	531	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAGAGACCCACTGAATA	NA	NA	NA	NA	NA	NA	NA	NA	95426345	95426876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_95426300_95426900
ENSMUST00000117295.2	chrX	+	882	1	FSM	ENSMUSG00000081684.5	ENSMUST00000117295.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14884	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	51987464	51988346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_51987500_51988300
ENSMUST00000117321.3	chrX	+	326	1	FSM	ENSMUSG00000080974.3	ENSMUST00000117321.3	326	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCAAAAGGAAAAGTAACCT	NA	NA	NA	NA	NA	NA	NA	NA	93659405	93659731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_93659400_93659700
ENSMUST00000117324.8	chr7	+	858	5	FSM	ENSMUSG00000038695.14	ENSMUST00000117324.8	858	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGCCTGGGCTCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	44117446	44121075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_44117584_44118230_44118394_44119835_44119962_44120536_44120732_44120838
ENSMUST00000117346.2	chr19	-	2080	12	FSM	ENSMUSG00000037418.7	ENSMUST00000117346.2	2080	12	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCAGTGTGATTAGTAT	NA	NA	NA	NA	NA	NA	NA	NA	9978997	9962537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_9962787_9963560_9963736_9964014_9964359_9966485_9966638_9966965_9967047_9967837_9967991_9969000_9969079_9969420_9969576_9970129_9970364_9970591_9970687_9974390_9974579_9978821
ENSMUST00000117356.2	chr6	-	213	1	FSM	ENSMUSG00000080921.5	ENSMUST00000117356.2	213	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	307	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCCCTCTGCGTGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	140692898	140692685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_140692700_140692900
ENSMUST00000117364.8	chr5	-	1657	10	FSM	ENSMUSG00000035234.19	ENSMUST00000117364.8	1657	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGTAAAGTTTGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	100968806	100953068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_100953318_100953763_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
ENSMUST00000117405.2	chr5	-	1941	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGTCCAAGAAGAAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	5833555	5831614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_5831600_5833600
ENSMUST00000117411.8	chr6	+	788	7	FSM	ENSMUSG00000029911.15	ENSMUST00000117411.8	933	7	51	94	51	8	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGATGATTCGTCTTTGATC	NA	NA	NA	NA	NA	NA	NA	NA	40448459	40457832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_40448760_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUST00000117425.8	chr5	-	1231	7	FSM	ENSMUSG00000015806.13	ENSMUST00000117425.8	1231	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	NA	NA	NA	NA	NA	NA	NA	45605515	45591394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45605434
ENSMUST00000117431.2	chrX	+	216	1	FSM	ENSMUSG00000084186.2	ENSMUST00000117431.2	216	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAACCCTCCCCCAATA	NA	NA	NA	NA	NA	NA	NA	NA	19737062	19737278	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_19737100_19737300
ENSMUST00000117442.8	chr2	-	683	5	FSM	ENSMUSG00000016257.16	ENSMUST00000117442.8	683	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTTGCTGTTGTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	174314691	174307377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174314624
ENSMUST00000117444.2	chr1	-	333	1	FSM	ENSMUSG00000081214.4	ENSMUST00000117444.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	181069885	181069552	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_181069600_181069900
ENSMUST00000117447.2	chr2	+	399	1	FSM	ENSMUSG00000070692.7	ENSMUST00000117447.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTTGGCTGATTAAA	NA	NA	NA	NA	NA	NA	NA	NA	122050473	122050872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_122050500_122050900
ENSMUST00000117450.8	chr9	+	1465	9	FSM	ENSMUSG00000011958.18	ENSMUST00000117450.8	1465	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTAGAATTTTCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	69896796	69911289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850
ENSMUST00000117462.2	chr19	-	1495	4	FSM	ENSMUSG00000041845.12	ENSMUST00000117462.2	1495	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTAGTGTCCTGACTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	4489449	4475694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4476790_4482082_4482193_4482795_4482884_4489247
ENSMUST00000117474.2	chr11	-	237	1	FSM	ENSMUSG00000082478.2	ENSMUST00000117474.2	237	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCTGCCGTCTGAGACT	NA	NA	NA	NA	NA	NA	NA	NA	101244371	101244134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_101244100_101244400
ENSMUST00000117485.3	chr2	-	433	1	FSM	ENSMUSG00000070271.8	ENSMUST00000117485.3	433	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1453	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACATCCCATGCACGGCT	NA	NA	NA	NA	NA	NA	NA	NA	14632132	14631699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_14631700_14632100
ENSMUST00000117487.3	chr4	-	462	1	FSM	ENSMUSG00000094320.2	ENSMUST00000117487.3	462	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAGAAATTCAAGCTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	148152949	148152487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_148152500_148152900
ENSMUST00000117507.10	chr3	-	1901	11	FSM	ENSMUSG00000028108.17	ENSMUST00000117507.10	1901	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCGTTGTCTTTAGTGCG	NA	NA	NA	NA	NA	NA	NA	NA	95646881	95641458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_95641784_95642134_95642223_95642510_95642732_95643158_95643534_95643783_95644104_95644324_95644370_95644944_95645026_95645119_95645201_95645323_95645429_95645550_95645614_95646684
ENSMUST00000117527.2	chrX	-	174	1	FSM	ENSMUSG00000084830.3	ENSMUST00000117527.2	174	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGGATTTTGAAATGTC	NA	NA	NA	NA	NA	NA	NA	NA	20447553	20447379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_20447400_20447600
ENSMUST00000117547.2	chr2	-	489	1	FSM	ENSMUSG00000082820.4	ENSMUST00000117547.2	489	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGCACCCCTCGGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	97780024	97779535	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_97779500_97780000
ENSMUST00000117548.2	chrX	+	636	1	FSM	ENSMUSG00000081738.2	ENSMUST00000117548.2	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTTCTAGCGCAGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	144958937	144959573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_144958900_144959600
ENSMUST00000117559.2	chr4	-	472	1	FSM	ENSMUSG00000081394.2	ENSMUST00000117559.2	472	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	317	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTATGCGTTAATAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	131876195	131875723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_131875700_131876200
ENSMUST00000117563.2	chr9	-	472	1	FSM	ENSMUSG00000080848.4	ENSMUST00000117563.2	472	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGTGGTAGAGCAGAGTT	NA	NA	NA	NA	NA	NA	NA	NA	115870132	115869660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_115869700_115870100
ENSMUST00000117571.2	chr6	+	333	1	FSM	ENSMUSG00000095526.3	ENSMUST00000117571.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	48500451	48500784	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_48500500_48500800
ENSMUST00000117602.2	chrX	-	156	1	FSM	ENSMUSG00000082423.2	ENSMUST00000117602.2	156	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTCACACAATGGCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	150276265	150276109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_150276100_150276300
ENSMUST00000117641.8	chr19	+	1493	9	FSM	ENSMUSG00000024663.21	ENSMUST00000117641.8	2004	9	0	511	0	-511	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTGGGACACCAGCACC	NA	NA	NA	NA	NA	NA	NA	NA	9995557	10012308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_9995724_10003893_10004150_10004747_10004844_10004923_10005002_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
ENSMUST00000117644.8	chr16	-	1727	12	FSM	ENSMUSG00000058240.15	ENSMUST00000117644.8	1727	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGTTTTTAAATATTCA	NA	NA	NA	NA	NA	NA	NA	NA	91525690	91486229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUST00000117661.9	chr5	+	2192	12	FSM	ENSMUSG00000039156.20	ENSMUST00000117661.9	4934	12	66	2676	0	-1555	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAAGAGACGAGCTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	54155906	54275723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_54156377_54210717_54210849_54232621_54232737_54259916_54260029_54260914_54261031_54261734_54261913_54262562_54262741_54267044_54267213_54267878_54267980_54268213_54268453_54273260_54273535_54275613
ENSMUST00000117679.2	chr5	+	336	1	FSM	ENSMUSG00000081228.2	ENSMUST00000117679.2	336	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTAGTTAAGATCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	137613888	137614224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_137613900_137614200
ENSMUST00000117687.8	chr18	-	2271	9	FSM	ENSMUSG00000024500.21	ENSMUST00000117687.8	2271	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTTCCTCTTTGTGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	43032359	42778333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_42779073_42781738_42781831_42796174_42796345_42821366_42821532_42834534_42834713_42864851_42864965_42870965_42871132_42874160_42874259_43031809
ENSMUST00000117690.2	chr2	-	278	1	FSM	ENSMUSG00000061272.9	ENSMUST00000117690.2	278	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCCTGCTGTCTGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	156253094	156252816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_156252800_156253100
ENSMUST00000117723.2	chr4	+	215	1	FSM	ENSMUSG00000083326.5	ENSMUST00000117723.2	215	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCCCTCTGCGTGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	138153098	138153313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_138153100_138153300
ENSMUST00000117744.2	chrX	-	255	1	FSM	ENSMUSG00000083482.2	ENSMUST00000117744.2	255	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCTATACATGTTCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	75963716	75963461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_75963500_75963700
ENSMUST00000117757.9	chr6	-	1273	7	FSM	ENSMUSG00000057666.19	ENSMUST00000117757.9	1273	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	NA	NA	NA	NA	NA	NA	NA	125143430	125138815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125143356
ENSMUST00000117772.2	chr11	+	231	1	FSM	ENSMUSG00000081254.2	ENSMUST00000117772.2	231	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTGGAAGAATTGGCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	32860372	32860603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_32860400_32860600
ENSMUST00000117783.8	chr5	+	370	3	FSM	ENSMUSG00000028999.16	ENSMUST00000117783.8	560	3	29	161	26	-161	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTCCTCCATTGCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	23992738	23998737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_23992881_23993287_23993334_23998555
ENSMUST00000117831.8	chr19	-	1378	7	FSM	ENSMUSG00000024847.16	ENSMUST00000117831.8	1378	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATCTTGAAGGCTGGTCA	NA	NA	NA	NA	NA	NA	NA	NA	4175858	4164445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335_4171546_4175729
ENSMUST00000117890.8	chr17	+	1641	7	FSM	ENSMUSG00000024160.17	ENSMUST00000117890.8	1641	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	25105616	25111123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_25105735_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
ENSMUST00000117892.2	chr15	+	2536	3	FSM	ENSMUSG00000081534.4	ENSMUST00000117892.2	2536	3	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	2426	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTTTTTTTTTCACT	NA	NA	NA	NA	NA	NA	NA	NA	97682235	97690573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_97682498_97687783_97687952_97688467
ENSMUST00000117893.2	chr11	-	792	1	FSM	ENSMUSG00000084384.4	ENSMUST00000117893.2	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	425	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCAAAAGCATGTAGATCC	NA	NA	NA	NA	NA	NA	NA	NA	58284386	58283594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_58283600_58284400
ENSMUST00000117906.2	chr2	-	678	2	FSM	ENSMUSG00000082740.2	ENSMUST00000117906.2	678	2	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAATTGTACCTCAATATG	NA	NA	NA	NA	NA	NA	NA	NA	150312085	150311330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_150311583_150311659
ENSMUST00000117927.2	chr8	-	456	1	FSM	ENSMUSG00000081378.2	ENSMUST00000117927.2	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTGTTGTGTGCACAAGC	NA	NA	NA	NA	NA	NA	NA	NA	120329364	120328908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_120328900_120329400
ENSMUST00000117944.2	chr5	-	1686	3	FSM	ENSMUSG00000051022.8	ENSMUST00000117944.2	1686	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCTCCTCTCTTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	39912818	39771277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_39772748_39907172_39907223_39912652
ENSMUST00000117958.8	chr16	+	1551	9	FSM	ENSMUSG00000022678.17	ENSMUST00000117958.8	1551	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAAATCCCTGCTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	13981150	14010692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14010205
ENSMUST00000117987.2	chr4	+	378	1	FSM	ENSMUSG00000070572.8	ENSMUST00000117987.2	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCTAGCCGCCACTTTG	NA	NA	NA	NA	NA	NA	NA	NA	149541785	149542163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_149541800_149542200
ENSMUST00000117988.2	chr2	-	238	1	FSM	ENSMUSG00000083832.2	ENSMUST00000117988.2	238	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTCATACCAGCTGGTAC	NA	NA	NA	NA	NA	NA	NA	NA	91472267	91472029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_91472000_91472300
ENSMUST00000117989.2	chr7	+	870	3	FSM	ENSMUSG00000047084.9	ENSMUST00000117989.2	1317	3	5	442	5	-442	multi-exon	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGGGCATGACTTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	79910967	79914680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_79911172_79911568_79911680_79914125
ENSMUST00000118001.8	chr17	+	1652	7	FSM	ENSMUSG00000014767.18	ENSMUST00000118001.8	1652	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	15720171	15737689	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_15720287_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15735877_15735973_15736965
ENSMUST00000118009.2	chr8	+	2250	8	FSM	ENSMUSG00000014907.11	ENSMUST00000118009.2	2990	8	740	0	740	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTAGAGTTTTTAATTAA	NA	NA	NA	NA	NA	NA	NA	NA	67313608	67343216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_67313699_67317189_67317353_67330318_67330413_67332250_67332334_67336094_67336256_67338416_67338469_67340424_67340528_67341712
ENSMUST00000118012.9	chr2	+	791	4	FSM	ENSMUSG00000078877.12	ENSMUST00000118012.9	1213	4	0	422	0	-422	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGGTTTTGTGGAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	176490404	176499989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_176490512_176493973_176494029_176499154_176499282_176499487
ENSMUST00000118015.9	chr3	-	1922	7	FSM	ENSMUSG00000019528.19	ENSMUST00000118015.9	1922	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGTTGTTTAAGTACTT	NA	NA	NA	NA	NA	NA	NA	NA	20209481	20176247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_20177029_20179421_20179642_20192180_20192308_20204702_20204866_20205116_20205292_20206893_20207030_20209161
ENSMUST00000118043.8	chr18	-	1986	14	FSM	ENSMUSG00000024501.21	ENSMUST00000118043.8	1986	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAATCACTAAGCCTCAA	NA	NA	NA	NA	NA	NA	NA	NA	43506337	43457291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_43457486_43458789_43458953_43461389_43461570_43462755_43462927_43465936_43466079_43466945_43467103_43475306_43475428_43478170_43478240_43486945_43487027_43487807_43487870_43491298_43491464_43494026_43494212_43496567_43496657_43506130
ENSMUST00000118047.2	chrX	-	411	1	FSM	ENSMUSG00000081603.2	ENSMUST00000118047.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGGGTTTAAACAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	65822458	65822047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_65822000_65822500
ENSMUST00000118048.2	chr11	-	411	1	FSM	ENSMUSG00000081604.6	ENSMUST00000118048.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATATTTTTGTTTTGGTCA	NA	NA	NA	NA	NA	NA	NA	NA	93928454	93928043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_93928000_93928500
ENSMUST00000118062.2	chr6	-	252	1	FSM	ENSMUSG00000083086.2	ENSMUST00000118062.2	252	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGCCCCTGGTTGAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	97867500	97867248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_97867200_97867500
ENSMUST00000118080.2	chr2	+	297	1	FSM	ENSMUSG00000084213.2	ENSMUST00000118080.2	297	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCACTGCTGAAATGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	72786241	72786538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_72786200_72786500
ENSMUST00000118083.2	chr11	-	432	1	FSM	ENSMUSG00000083705.3	ENSMUST00000118083.2	432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGACAATGGAAACACA	NA	NA	NA	NA	NA	NA	NA	NA	117311953	117311521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_117311500_117312000
ENSMUST00000118097.8	chr5	-	1232	7	FSM	ENSMUSG00000015806.13	ENSMUST00000118097.8	1232	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	NA	NA	NA	NA	NA	NA	NA	45607513	45591394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607431
ENSMUST00000118102.2	chrX	-	438	1	FSM	ENSMUSG00000082755.2	ENSMUST00000118102.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAGGCCAATAAAGACTCA	NA	NA	NA	NA	NA	NA	NA	NA	75031221	75030783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_75030800_75031200
ENSMUST00000118118.8	chr3	+	2564	9	FSM	ENSMUSG00000036580.16	ENSMUST00000118118.8	3981	9	221	1196	0	-1190	multi-exon	TRUE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTTCAGCAGATAAGCTA	NA	NA	NA	NA	NA	NA	NA	NA	55019807	55043542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_55019913_55024404_55025217_55029020_55029219_55032175_55032347_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
ENSMUST00000118121.2	chr5	+	919	2	FSM	ENSMUSG00000118332.2	ENSMUST00000118121.2	919	2	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCGGTGTTTTCCTAATG	NA	NA	NA	NA	NA	NA	NA	NA	143534500	143537693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_143534890_143537163
ENSMUST00000118125.9	chr7	+	2275	9	FSM	ENSMUSG00000074141.14	ENSMUST00000118125.9	2275	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGGCTCACTTCCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	44465819	44490228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_44465908_44481539_44481606_44483374_44483517_44486054_44486291_44486799_44486913_44487412_44487615_44488574_44488644_44488747_44488885_44489006
ENSMUST00000118147.2	chr3	+	391	1	FSM	ENSMUSG00000081829.2	ENSMUST00000118147.2	391	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATCAAATCACATGAAAGAC	NA	NA	NA	NA	NA	NA	NA	NA	137610769	137611160	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_137610800_137611200
ENSMUST00000118193.8	chr15	+	933	5	FSM	ENSMUSG00000022151.17	ENSMUST00000118193.8	1671	5	0	738	0	-738	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAGAGGGGGAAAAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	5215005	5247079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_5215054_5219062_5219285_5237849_5237932_5241479_5241612_5246630
ENSMUST00000118198.8	chr9	+	497	5	FSM	ENSMUSG00000033543.18	ENSMUST00000118198.8	893	5	45	351	24	-222	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGAAACATGGAAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	69919876	69929797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69926670_69926798_69929718
ENSMUST00000118199.8	chr4	+	1390	6	FSM	ENSMUSG00000028779.17	ENSMUST00000118199.8	1915	6	0	525	0	-524	multi-exon	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTGCCTTGGAGTAGGG	NA	NA	NA	NA	NA	NA	NA	NA	129996350	130021403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_129996521_130001155_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
ENSMUST00000118212.2	chr7	-	609	1	FSM	ENSMUSG00000074243.5	ENSMUST00000118212.2	609	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGTTTGACCCTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	27649188	27648579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_27648600_27649200
ENSMUST00000118224.2	chr5	-	399	1	FSM	ENSMUSG00000084235.3	ENSMUST00000118224.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	286	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCCTCTGCTTGTAATAC	NA	NA	NA	NA	NA	NA	NA	NA	22733717	22733318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_22733300_22733700
ENSMUST00000118230.2	chr6	-	213	1	FSM	ENSMUSG00000059159.7	ENSMUST00000118230.2	213	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCCCTCTGCGTGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	52323927	52323714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_52323700_52323900
ENSMUST00000118236.8	chr16	-	893	4	FSM	ENSMUSG00000022674.16	ENSMUST00000118236.8	893	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTGTTGGGGTTTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	15412336	15373744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_15374408_15398922_15399072_15411554_15411623_15412323
ENSMUST00000118248.2	chr2	+	480	1	FSM	ENSMUSG00000082399.2	ENSMUST00000118248.2	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGACTCCTGCCAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	134645868	134646348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_134645900_134646300
ENSMUST00000118252.2	chr18	+	640	1	FSM	ENSMUSG00000080866.2	ENSMUST00000118252.2	640	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCATGCATAGTGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	13031483	13032123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_13031500_13032100
ENSMUST00000118269.2	chr2	+	318	1	FSM	ENSMUSG00000066068.6	ENSMUST00000118269.2	318	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	320	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCCTCCCCCAATAAAA	NA	NA	NA	NA	NA	NA	NA	NA	32161856	32162174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_32161900_32162200
ENSMUST00000118281.2	chr19	-	635	1	FSM	ENSMUSG00000084221.2	ENSMUST00000118281.2	635	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTTCTTGTGCAGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	6643266	6642631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6642600_6643300
ENSMUST00000118297.2	chr2	+	379	1	FSM	ENSMUSG00000083378.4	ENSMUST00000118297.2	379	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGAGGACGAGGATTAGG	NA	NA	NA	NA	NA	NA	NA	NA	4705048	4705427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_4705000_4705400
ENSMUST00000118304.2	chr11	-	779	1	FSM	ENSMUSG00000083838.2	ENSMUST00000118304.2	779	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATGAAGTTGAAGACTTT	NA	NA	NA	NA	NA	NA	NA	NA	4080150	4079371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_4079400_4080200
ENSMUST00000118305.8	chrX	+	1684	3	FSM	ENSMUSG00000046180.12	ENSMUST00000118305.8	1684	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCAGCAGTGTTTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	57954719	57965664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_57954780_57956768_57956922_57964193
ENSMUST00000118307.2	chr11	-	348	1	FSM	ENSMUSG00000083061.2	ENSMUST00000118307.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	49569884	49569536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_49569500_49569900
ENSMUST00000118310.8	chr16	+	890	5	FSM	ENSMUSG00000044442.12	ENSMUST00000118310.8	1700	5	0	810	0	247	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGCTAGTACAAAGGATTGG	NA	NA	NA	NA	NA	NA	NA	NA	87151114	87164820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87164352
ENSMUST00000118351.3	chr5	-	454	1	FSM	ENSMUSG00000080875.5	ENSMUST00000118351.3	454	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGATGGCCGTGGCTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	9311388	9310934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_9310900_9311400
ENSMUST00000118352.3	chr11	-	483	1	FSM	ENSMUSG00000083394.3	ENSMUST00000118352.3	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTACGCAAAGAAATAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	115615634	115615151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_115615200_115615600
ENSMUST00000118364.2	chr6	-	2488	11	FSM	ENSMUSG00000049093.10	ENSMUST00000118364.2	2488	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATCAAAACATGAATATT	NA	NA	NA	NA	NA	NA	NA	NA	67468839	67399915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_67400988_67403558_67403650_67408589_67408693_67411588_67411676_67429280_67429498_67443258_67443405_67450780_67450942_67455930_67456055_67463079_67463377_67467650_67467754_67468752
ENSMUST00000118368.8	chr11	-	696	6	FSM	ENSMUSG00000020415.17	ENSMUST00000118368.8	696	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGTTCAGATTGTGAATA	NA	NA	NA	NA	NA	NA	NA	NA	43317044	43311099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317015
ENSMUST00000118388.2	chr2	+	846	1	FSM	ENSMUSG00000084013.2	ENSMUST00000118388.2	846	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	420	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTCTTAAACAGAGGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	170126954	170127800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_170127000_170127800
ENSMUST00000118429.8	chr7	-	2774	9	FSM	ENSMUSG00000047554.15	ENSMUST00000118429.8	2774	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTATCTGTCTTCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	109586136	109572691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168_109585453_109585573_109585800_109585924
ENSMUST00000118443.2	chr13	-	322	1	FSM	ENSMUSG00000084072.2	ENSMUST00000118443.2	322	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTTATGTAAGAGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	22267957	22267635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_22267600_22268000
ENSMUST00000118459.2	chr6	-	685	1	FSM	ENSMUSG00000086922.3	ENSMUST00000118459.2	685	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTCTTCCCCATCCGCT	NA	NA	NA	NA	NA	NA	NA	NA	31119598	31118913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_31118900_31119600
ENSMUST00000118504.9	chr17	-	2474	16	FSM	ENSMUSG00000024039.16	ENSMUST00000118504.9	2474	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCGTGTCGACCTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	31856212	31831613	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852126_31856056
ENSMUST00000118515.9	chr7	-	1662	8	FSM	ENSMUSG00000008140.19	ENSMUST00000118515.9	1662	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTGCCTTCTGTGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	44145830	44139534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44140395_44140586_44140674_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUST00000118533.2	chr5	+	438	1	FSM	ENSMUSG00000062353.7	ENSMUST00000118533.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5591	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATCCCATGCACGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	3286430	3286868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_3286400_3286900
ENSMUST00000118557.8	chr3	+	437	4	FSM	ENSMUSG00000028102.16	ENSMUST00000118557.8	2424	4	242	1745	0	-1105	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCGCCTATTGATGGAA	NA	NA	NA	NA	NA	NA	NA	NA	96542987	96550937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_96543060_96543989_96544106_96544446_96544649_96550890
ENSMUST00000118558.5	chr6	-	315	4	FSM	ENSMUSG00000023089.13	ENSMUST00000118558.5	315	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	NA	NA	NA	NA	NA	NA	NA	NA	24527569	24518664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_24518824_24519190_24519257_24527271_24527317_24527524
ENSMUST00000118566.8	chr3	+	1270	9	FSM	ENSMUSG00000027940.19	ENSMUST00000118566.8	2190	9	11	909	-7	-238	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGAGAAACCCAGGATTGG	NA	NA	NA	NA	NA	NA	NA	NA	89986971	90007294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89996354_89996431_89997103_89997167_89997316_89997387_89998319_89998399_90006834
ENSMUST00000118570.2	chr17	+	1016	5	FSM	ENSMUSG00000046711.17	ENSMUST00000118570.2	1898	5	27	855	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCCGTAGAGGGTCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	27775668	27781782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_27776041_27778506_27778645_27779901_27779986_27780434_27780486_27781411
ENSMUST00000118577.2	chr1	-	171	1	FSM	ENSMUSG00000084093.2	ENSMUST00000118577.2	171	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCCCCTCCCCCACCACA	NA	NA	NA	NA	NA	NA	NA	NA	166259444	166259273	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_166259300_166259400
ENSMUST00000118580.6	chr5	-	2393	8	FSM	ENSMUSG00000042594.17	ENSMUST00000118580.6	2393	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTCAGAGTACTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	121974880	121955352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_121956157_121956278_121956451_121956527_121956713_121956822_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121974612
ENSMUST00000118587.8	chr3	-	1632	5	FSM	ENSMUSG00000027954.10	ENSMUST00000118587.8	1632	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCTTTTCTGCCCCACC	NA	NA	NA	NA	NA	NA	NA	NA	89188449	89179042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_89179912_89180078_89180130_89180263_89180330_89183436_89183733_89188099
ENSMUST00000118611.2	chr11	-	197	1	FSM	ENSMUSG00000081552.2	ENSMUST00000118611.2	197	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAGTTATTTAGTCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	73662946	73662749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_73662700_73662900
ENSMUST00000118637.2	chr11	+	159	1	FSM	ENSMUSG00000081376.2	ENSMUST00000118637.2	159	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTCACACAATGGCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	115383849	115384008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_115383800_115384000
ENSMUST00000118642.2	chrX	+	387	1	FSM	ENSMUSG00000059461.8	ENSMUST00000118642.2	387	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGGGTCATACCTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	161349852	161350239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_161349900_161350200
ENSMUST00000118652.2	chrX	-	386	1	FSM	ENSMUSG00000080877.2	ENSMUST00000118652.2	386	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACATCGGTCTGCAATGT	NA	NA	NA	NA	NA	NA	NA	NA	7905235	7904849	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_7904800_7905200
ENSMUST00000118658.2	chr7	-	309	1	FSM	ENSMUSG00000081911.2	ENSMUST00000118658.2	309	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTCGTGGCTGCTGCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	105339774	105339465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_105339500_105339800
ENSMUST00000118662.2	chr5	+	375	1	FSM	ENSMUSG00000082705.2	ENSMUST00000118662.2	375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATGTGGAAAGCATTGAT	NA	NA	NA	NA	NA	NA	NA	NA	72204547	72204922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_72204500_72204900
ENSMUST00000118664.2	chrX	-	348	1	FSM	ENSMUSG00000082260.4	ENSMUST00000118664.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	113891014	113890666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_113890700_113891000
ENSMUST00000118708.2	chr2	-	357	1	FSM	ENSMUSG00000083240.4	ENSMUST00000118708.2	357	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGAAGTGCCTGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	40017872	40017515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_40017500_40017900
ENSMUST00000118709.2	chr2	-	624	1	FSM	ENSMUSG00000083481.5	ENSMUST00000118709.2	624	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	307	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCACTCGTAGTGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	175597399	175596775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_175596800_175597400
ENSMUST00000118718.2	chr1	+	431	1	FSM	ENSMUSG00000082609.2	ENSMUST00000118718.2	431	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGACAATGGAAACACA	NA	NA	NA	NA	NA	NA	NA	NA	60156413	60156844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_60156400_60156800
ENSMUST00000118723.2	chrX	+	402	1	FSM	ENSMUSG00000081049.2	ENSMUST00000118723.2	402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCGGTGACTTGATGTT	NA	NA	NA	NA	NA	NA	NA	NA	78238652	78239054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_78238700_78239100
ENSMUST00000118762.9	chr17	+	1725	7	FSM	ENSMUSG00000005936.20	ENSMUST00000118762.9	3853	7	30	2098	-17	-172	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGCAGCCTGATGCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	29171425	29186425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_29171544_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
ENSMUST00000118781.2	chr4	-	438	1	FSM	ENSMUSG00000083328.4	ENSMUST00000118781.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	581	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATCCCATGCACGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	13483192	13482754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_13482800_13483200
ENSMUST00000118784.8	chr11	+	953	5	FSM	ENSMUSG00000023723.18	ENSMUST00000118784.8	1404	5	13	438	0	399	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCTCAGAATCCTACTTG	NA	NA	NA	NA	NA	NA	NA	NA	88095249	88101895	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_88095407_88096014_88096186_88100678_88100757_88100929_88101057_88101475
ENSMUST00000118791.2	chrX	+	801	1	FSM	ENSMUSG00000067147.8	ENSMUST00000118791.2	801	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2176	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACACTGAATTTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	165637206	165638007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_165637200_165638000
ENSMUST00000118810.2	chr7	-	498	2	FSM	ENSMUSG00000041775.8	ENSMUST00000118810.2	1350	2	142	710	142	-710	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCCCTGGCCCCACAAGG	NA	NA	NA	NA	NA	NA	NA	NA	138447844	138438316	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_138438656_138447685
ENSMUST00000118829.2	chr5	-	483	1	FSM	ENSMUSG00000083833.5	ENSMUST00000118829.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGACTCCTGCCAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	115940218	115939735	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_115939700_115940200
ENSMUST00000118834.2	chr2	+	504	1	FSM	ENSMUSG00000084098.2	ENSMUST00000118834.2	504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTACAGGAAGGCTGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	23125247	23125751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_23125200_23125800
ENSMUST00000118837.2	chr2	-	417	1	FSM	ENSMUSG00000081157.2	ENSMUST00000118837.2	417	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGTGACCTGGGGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	59395028	59394611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_59394600_59395000
ENSMUST00000118860.2	chr3	-	1403	4	FSM	ENSMUSG00000027954.10	ENSMUST00000118860.2	1403	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGACATGCTTTTCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	89186948	89179046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_89179912_89180078_89180130_89183436_89183733_89186757
ENSMUST00000118863.2	chr6	+	567	1	FSM	ENSMUSG00000053173.13	ENSMUST00000118863.2	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	720	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGATCTTAACTGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	128290319	128290886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_128290300_128290900
ENSMUST00000118875.8	chr6	-	1420	7	FSM	ENSMUSG00000057666.19	ENSMUST00000118875.8	1420	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	NA	NA	NA	NA	NA	NA	NA	125142736	125138816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142514
ENSMUST00000118885.8	chr16	+	1392	6	FSM	ENSMUSG00000004070.16	ENSMUST00000118885.8	1392	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGCCTCTGCCTAACAGC	NA	NA	NA	NA	NA	NA	NA	NA	4574766	4584109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_4575035_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
ENSMUST00000118902.8	chr4	-	1887	10	FSM	ENSMUSG00000032897.18	ENSMUST00000118902.8	1887	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	NA	NA	NA	NA	NA	NA	NA	120688769	120614634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120688637
ENSMUST00000118909.2	chr7	+	972	1	FSM	ENSMUSG00000100153.3	ENSMUST00000118909.2	972	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCACTTGACACTGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	119339350	119340322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_119339400_119340300
ENSMUST00000118911.2	chr2	-	886	1	FSM	ENSMUSG00000082480.2	ENSMUST00000118911.2	886	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGTTTTTATACAAGAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	143985293	143984407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_143984400_143985300
ENSMUST00000118924.2	chrX	+	621	1	FSM	ENSMUSG00000082035.2	ENSMUST00000118924.2	621	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	481	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	95528464	95529085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_95528500_95529100
ENSMUST00000118949.2	chr4	-	1016	1	FSM	ENSMUSG00000081953.2	ENSMUST00000118949.2	1016	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTAGGAACATTTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	48345230	48344214	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_48344200_48345200
ENSMUST00000118950.2	chr6	-	348	1	FSM	ENSMUSG00000084291.4	ENSMUST00000118950.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCCGTTTTGTAAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	146549086	146548738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_146548700_146549100
ENSMUST00000118956.2	chrX	+	637	1	FSM	ENSMUSG00000083798.2	ENSMUST00000118956.2	637	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCCAATTTCTGAGTATAT	NA	NA	NA	NA	NA	NA	NA	NA	52507207	52507844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_52507200_52507800
ENSMUST00000118966.8	chr12	+	4892	4	FSM	ENSMUSG00000046768.14	ENSMUST00000118966.8	4892	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTTCATTCGATACTGAG	NA	NA	NA	NA	NA	NA	NA	NA	75355095	75444730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_75355776_75422121_75422181_75438452_75438618_75440742
ENSMUST00000118978.2	chr4	+	1389	1	FSM	ENSMUSG00000070610.5	ENSMUST00000118978.2	1389	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGGTAGCAGAAACCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	144313813	144315202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_144313800_144315200
ENSMUST00000118982.2	chr8	+	367	1	FSM	ENSMUSG00000083911.2	ENSMUST00000118982.2	367	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGAGATGACAACGACAAT	NA	NA	NA	NA	NA	NA	NA	NA	124580567	124580934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_124580600_124580900
ENSMUST00000118985.2	chrX	-	157	1	FSM	ENSMUSG00000084265.2	ENSMUST00000118985.2	157	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTCACACAATGGCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	36102946	36102789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_36102800_36102900
ENSMUST00000118993.8	chr5	+	1867	6	FSM	ENSMUSG00000034118.16	ENSMUST00000118993.8	1867	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAATGGTCCCGTTTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	130102166	130164570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_130102276_130130430_130131377_130143308_130143508_130158348_130158400_130163299_130163340_130164048
ENSMUST00000118998.2	chr5	+	402	1	FSM	ENSMUSG00000080893.2	ENSMUST00000118998.2	402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	820	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCAGTGAAGACTGTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	130217235	130217637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_130217200_130217600
ENSMUST00000119002.2	chr3	-	568	4	FSM	ENSMUSG00000028062.16	ENSMUST00000119002.2	568	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTCTCACCTGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	88460166	88457126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460036
ENSMUST00000119003.2	chr8	+	1172	4	FSM	ENSMUSG00000066880.16	ENSMUST00000119003.2	2920	4	0	1748	0	-1748	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACATAAAAGAACTCACACA	NA	NA	NA	NA	NA	NA	NA	NA	72676695	72686725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_72676817_72682045_72682173_72682981_72683043_72685862
ENSMUST00000119024.2	chr6	+	210	1	FSM	ENSMUSG00000072940.6	ENSMUST00000119024.2	210	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	881	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCAGCTGGGTTCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	86311012	86311222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_86311000_86311200
ENSMUST00000119051.2	chr11	-	368	1	FSM	ENSMUSG00000082530.2	ENSMUST00000119051.2	368	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGCTCCTCCGGCAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	46342174	46341806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_46341800_46342200
ENSMUST00000119052.2	chr11	-	395	1	FSM	ENSMUSG00000082110.2	ENSMUST00000119052.2	395	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATCACATGAAAGACTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	78476381	78475986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_78476000_78476400
ENSMUST00000119086.2	chr2	+	1110	1	FSM	ENSMUSG00000081611.2	ENSMUST00000119086.2	1110	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTCTCCTATGGTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	77121674	77122784	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_77121700_77122800
ENSMUST00000119128.9	chr11	+	1235	7	FSM	ENSMUSG00000082286.12	ENSMUST00000119128.9	1235	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCTCGGTTGTGGCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	3076005	3081004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_3076179_3077478_3077645_3078928_3079166_3079381_3079521_3079764_3079912_3080152_3080314_3080792
ENSMUST00000119140.2	chr4	+	483	1	FSM	ENSMUSG00000081559.4	ENSMUST00000119140.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGGACACAAAGAAATAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	45550016	45550499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_45550000_45550500
ENSMUST00000119149.8	chr2	-	1458	4	FSM	ENSMUSG00000078880.11	ENSMUST00000119149.8	1458	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATCAGTGTAAGAAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	176328136	176315986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_176317159_176317363_176317491_176324514_176324570_176328032
ENSMUST00000119172.2	chr2	+	543	6	FSM	ENSMUSG00000014077.14	ENSMUST00000119172.2	3027	6	91	2393	91	-2393	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGCCATATCTTTTACAGA	NA	NA	NA	NA	NA	NA	NA	NA	119378292	119415103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_119378399_119391211_119391285_119397130_119397212_119402248_119402377_119411175_119411238_119415010
ENSMUST00000119227.3	chr17	-	452	4	FSM	ENSMUSG00000024208.17	ENSMUST00000119227.3	452	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTCCTGGTTTGGAACT	NA	NA	NA	NA	NA	NA	NA	NA	27352876	27341643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_27341815_27344120_27344191_27344857_27344906_27352713
ENSMUST00000119257.2	chr11	+	357	1	FSM	ENSMUSG00000082456.2	ENSMUST00000119257.2	357	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCTAGGCCTACCCCCTA	NA	NA	NA	NA	NA	NA	NA	NA	100134098	100134455	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_100134100_100134500
ENSMUST00000119273.2	chr16	-	778	4	FSM	ENSMUSG00000022706.17	ENSMUST00000119273.2	778	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGAGTATCTGTCTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	18695289	18690975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_18691413_18692286_18692446_18694073_18694187_18695220
ENSMUST00000119311.8	chr13	-	2627	4	FSM	ENSMUSG00000021460.18	ENSMUST00000119311.8	2627	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGGCTGCTCTCTCA	NA	NA	NA	NA	NA	NA	NA	NA	53083690	53061080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_53063352_53073036_53073125_53073234_53073303_53083490
ENSMUST00000119328.2	chrX	+	483	1	FSM	ENSMUSG00000068014.6	ENSMUST00000119328.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	46989221	46989704	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_46989200_46989700
ENSMUST00000119346.2	chr11	-	1517	8	FSM	ENSMUSG00000020682.18	ENSMUST00000119346.2	1517	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAGACTGTCTAGGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	83353818	83333886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_83334102_83334584_83334753_83335036_83335187_83335646_83335893_83338345_83338571_83342211_83342400_83342485_83342566_83353573
ENSMUST00000119350.2	chr11	+	634	1	FSM	ENSMUSG00000084129.2	ENSMUST00000119350.2	634	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGTTGGTTCTAGCACA	NA	NA	NA	NA	NA	NA	NA	NA	41032589	41033223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_41032600_41033200
ENSMUST00000119359.2	chrX	+	394	1	FSM	ENSMUSG00000081473.4	ENSMUST00000119359.2	394	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACACTAGGTGTTGAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	37485811	37486205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_37485800_37486200
ENSMUST00000119379.2	chr6	+	455	4	FSM	ENSMUSG00000002416.14	ENSMUST00000119379.2	455	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATGTTTCTGATGACAA	NA	NA	NA	NA	NA	NA	NA	NA	39569516	39576405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_39569647_39573384_39573530_39575199_39575300_39576325
ENSMUST00000119383.2	chr7	-	555	1	FSM	ENSMUSG00000081895.4	ENSMUST00000119383.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	72299059	72298504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_72298500_72299100
ENSMUST00000119403.2	chr4	+	695	3	FSM	ENSMUSG00000042198.13	ENSMUST00000119403.2	695	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTTTTGGGGTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	3940853	3943525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_3941312_3942720_3942820_3943387
ENSMUST00000119417.2	chr3	+	2191	1	FSM	ENSMUSG00000082896.2	ENSMUST00000119417.2	2191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCAGAACTATGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	18062969	18065160	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_18063000_18065200
ENSMUST00000119438.2	chr2	-	645	1	FSM	ENSMUSG00000080859.2	ENSMUST00000119438.2	645	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2687	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTCAATAGTTCTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	105385190	105384545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_105384500_105385200
ENSMUST00000119447.2	chr11	-	695	1	FSM	ENSMUSG00000044751.6	ENSMUST00000119447.2	695	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTCTTTCTCAGTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	55009621	55008926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_55008900_55009600
ENSMUST00000119459.2	chr2	-	411	1	FSM	ENSMUSG00000082029.2	ENSMUST00000119459.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCCACTATGAGGGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	119496517	119496106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_119496100_119496500
ENSMUST00000119467.2	chr11	+	1274	1	FSM	ENSMUSG00000082292.4	ENSMUST00000119467.2	1274	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTCTAAAGATGGAGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	58078564	58079838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_58078600_58079800
ENSMUST00000119496.2	chr6	-	615	1	FSM	ENSMUSG00000080932.4	ENSMUST00000119496.2	615	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACACATGATATTTGTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	122675987	122675372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_122675400_122676000
ENSMUST00000119534.2	chrX	-	156	1	FSM	ENSMUSG00000081897.2	ENSMUST00000119534.2	156	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGATTCACACAAAGGCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	143051200	143051044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_143051000_143051200
ENSMUST00000119541.2	chr7	+	555	1	FSM	ENSMUSG00000066543.9	ENSMUST00000119541.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	35817698	35818253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_35817700_35818300
ENSMUST00000119544.2	chr16	-	411	1	FSM	ENSMUSG00000081176.2	ENSMUST00000119544.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCCACTATGAGGGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	90911487	90911076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_90911100_90911500
ENSMUST00000119546.2	chrX	+	410	1	FSM	ENSMUSG00000082284.2	ENSMUST00000119546.2	410	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTCCACTATGAGGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	100868120	100868530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_100868100_100868500
ENSMUST00000119551.2	chr11	+	1002	1	FSM	ENSMUSG00000069939.9	ENSMUST00000119551.2	1002	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCCTGGACCACCCACC	NA	NA	NA	NA	NA	NA	NA	NA	26736632	26737634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_26736600_26737600
ENSMUST00000119560.2	chr4	+	411	1	FSM	ENSMUSG00000063314.6	ENSMUST00000119560.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCCACTATGAGGGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	94487621	94488032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_94487600_94488000
ENSMUST00000119570.8	chr3	+	1693	9	FSM	ENSMUSG00000027940.19	ENSMUST00000119570.8	2233	9	0	540	0	137	multi-exon	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCGCCCCTTAGTGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	89979957	90007669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89980158_89981026_89981153_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
ENSMUST00000119576.8	chr5	+	1182	4	FSM	ENSMUSG00000034211.15	ENSMUST00000119576.8	5061	4	14	3865	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGGCCTGTTTTGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	129792574	129795755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_129792614_129792747_129792975_129793790_129793931_129794979
ENSMUST00000119579.3	chr5	+	636	2	FSM	ENSMUSG00000015804.15	ENSMUST00000119579.3	636	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTGTTGTTGTTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	45677636	45682940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_45677827_45682494
ENSMUST00000119591.2	chr19	-	3481	21	FSM	ENSMUSG00000025199.17	ENSMUST00000119591.2	3481	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGAATCTCTACTCATT	NA	NA	NA	NA	NA	NA	NA	NA	44095916	44061774	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_44062980_44063869_44063970_44065701_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095726
ENSMUST00000119606.8	chr10	+	1841	3	FSM	ENSMUSG00000035011.16	ENSMUST00000119606.8	1841	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAACCAAAAACAAAA	NA	NA	NA	NA	NA	NA	NA	NA	80972382	80984277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80972494_80979795_80981052_80983803
ENSMUST00000119616.2	chr4	-	210	1	FSM	ENSMUSG00000082220.4	ENSMUST00000119616.2	210	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCAGCTGGGTTCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	127035281	127035071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_127035100_127035300
ENSMUST00000119694.3	chr19	+	1442	14	FSM	ENSMUSG00000083282.4	ENSMUST00000119694.3	1980	14	91	447	-33	-120	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTCAGGACCTATGTTG	NA	NA	NA	NA	NA	NA	NA	NA	4905248	4910499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_4905515_4905725_4905825_4906097_4906183_4906274_4906337_4906539_4906616_4907997_4908112_4908214_4908361_4908443_4908541_4908619_4908701_4909430_4909551_4909629_4909695_4909785_4909877_4910277_4910337_4910418
ENSMUST00000119699.8	chrX	-	1750	7	FSM	ENSMUSG00000031310.17	ENSMUST00000119699.8	1750	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAATAAAAGTGAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	100463970	100458563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460582_100460892_100460937_100461878_100462559_100463933
ENSMUST00000119728.2	chr6	+	528	1	FSM	ENSMUSG00000081669.2	ENSMUST00000119728.2	528	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTGATCAGGTAACTGC	NA	NA	NA	NA	NA	NA	NA	NA	85053173	85053701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_85053200_85053700
ENSMUST00000119745.2	chr6	+	785	1	FSM	ENSMUSG00000082920.2	ENSMUST00000119745.2	785	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACACTAAGTTTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	34763613	34764398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_34763600_34764400
ENSMUST00000119767.2	chr6	+	348	1	FSM	ENSMUSG00000057696.5	ENSMUST00000119767.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	38353741	38354089	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_38353700_38354100
ENSMUST00000119780.2	chr6	+	471	1	FSM	ENSMUSG00000055093.11	ENSMUST00000119780.2	471	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3024	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGTATGCGTTAATAAAA	NA	NA	NA	NA	NA	NA	NA	NA	122433862	122434333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_122433900_122434300
ENSMUST00000119790.2	chr2	-	793	1	FSM	ENSMUSG00000081400.2	ENSMUST00000119790.2	793	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1257	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGTCTCTAGGAGACATG	NA	NA	NA	NA	NA	NA	NA	NA	83184293	83183500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_83183500_83184300
ENSMUST00000119822.2	chr2	+	798	1	FSM	ENSMUSG00000081992.2	ENSMUST00000119822.2	798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCCAGATTTTTAATGG	NA	NA	NA	NA	NA	NA	NA	NA	34455010	34455808	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_34455000_34455800
ENSMUST00000119825.8	chr17	-	3769	18	FSM	ENSMUSG00000003534.18	ENSMUST00000119825.8	3769	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGGGTGTATTTCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	36011502	35992458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35997372_35997484_35998036_35998203_35999430_35999583_35999677_35999762_36000558_36000806_36000885_36001073_36002019_36002123_36002338_36002487_36003747_36003977_36004483_36004587_36004679_36004810_36011322
ENSMUST00000119827.8	chr10	-	1253	9	FSM	ENSMUSG00000019942.14	ENSMUST00000119827.8	1253	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTCTGTATATGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	69188733	69174153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69187421_69187513_69188665
ENSMUST00000119836.2	chr1	-	1401	1	FSM	ENSMUSG00000080950.2	ENSMUST00000119836.2	1401	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCATTTTTGTAGCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	152606310	152604909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_152604900_152606300
ENSMUST00000119837.2	chr11	+	557	1	FSM	ENSMUSG00000083337.2	ENSMUST00000119837.2	557	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGATCTTAACTGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	96139458	96140015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_96139500_96140000
ENSMUST00000119853.2	chr11	+	813	1	FSM	ENSMUSG00000080776.2	ENSMUST00000119853.2	813	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	252	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCACCCATTGTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	46618644	46619457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_46618600_46619500
ENSMUST00000119872.2	chr7	+	353	1	FSM	ENSMUSG00000081359.2	ENSMUST00000119872.2	353	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACTTCAATCAGCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	100229473	100229826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_100229500_100229800
ENSMUST00000119876.2	chr6	+	378	1	FSM	ENSMUSG00000067344.8	ENSMUST00000119876.2	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGTTCAATCAGCTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	145212125	145212503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_145212100_145212500
ENSMUST00000119884.2	chr5	+	1194	1	FSM	ENSMUSG00000083261.5	ENSMUST00000119884.2	1194	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCCAGTCACTCTTTGAC	NA	NA	NA	NA	NA	NA	NA	NA	39955556	39956750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_39955600_39956800
ENSMUST00000119917.2	chr10	-	948	2	FSM	ENSMUSG00000020027.19	ENSMUST00000119917.2	948	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACACATGCCTCATAT	NA	NA	NA	NA	NA	NA	NA	NA	95251145	95248477	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_95248973_95250692
ENSMUST00000119917.2-0	chr10	-	1239	2	FSM	ENSMUSG00000020027.19	ENSMUST00000119917.2	948	2	120	-411	120	411	multi-exon	FALSE	canonical	NA	NA	NA	NA	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACCCTGGCTGACCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	95251025	95248066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_95248973_95250692
ENSMUST00000119929.8	chr7	-	2346	8	FSM	ENSMUSG00000047554.15	ENSMUST00000119929.8	2346	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTAACATGCTTGTAATTC	NA	NA	NA	NA	NA	NA	NA	NA	109585466	109572510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168_109585232_109585416
ENSMUST00000119945.8	chr17	+	1018	7	FSM	ENSMUSG00000034729.17	ENSMUST00000119945.8	1018	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGGTTTTGTTTACT	NA	NA	NA	NA	NA	NA	NA	NA	47679815	47689606	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_47679880_47683351_47683417_47683497_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
ENSMUST00000119947.2	chr16	+	1090	1	FSM	ENSMUSG00000083405.2	ENSMUST00000119947.2	1090	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGCGGACTGTTTTACAC	NA	NA	NA	NA	NA	NA	NA	NA	37702903	37703993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_37702900_37704000
ENSMUST00000119953.2	chr16	-	1945	9	FSM	ENSMUSG00000005846.13	ENSMUST00000119953.2	1945	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1427	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	NA	NA	NA	NA	NA	NA	NA	NA	11021195	11010833	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
ENSMUST00000119968.8	chr3	+	1339	6	FSM	ENSMUSG00000019710.14	ENSMUST00000119968.8	1339	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAACAGAAGTCTTAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	87826812	87830969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUST00000119978.2	chr4	-	1002	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCCTGGACCACCCACC	NA	NA	NA	NA	NA	NA	NA	NA	91740906	91739904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_91739900_91740900
ENSMUST00000119985.2	chr5	+	859	3	FSM	ENSMUSG00000034211.15	ENSMUST00000119985.2	859	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTTTTGATAATGACATA	NA	NA	NA	NA	NA	NA	NA	NA	129792640	129795511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_129792828_129793790_129793931_129794979
ENSMUST00000119991.8	chr18	-	941	6	FSM	ENSMUSG00000024378.10	ENSMUST00000119991.8	941	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTAAAAGTCTTATTTG	NA	NA	NA	NA	NA	NA	NA	NA	33346819	33336457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_33336869_33338273_33338379_33339172_33339300_33341229_33341280_33342095_33342211_33346686
ENSMUST00000120016.3	chr17	+	2796	2	FSM	ENSMUSG00000079605.6	ENSMUST00000120016.3	2796	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTAGACTGGCTTGAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	27192140	27195177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_27192289_27192529
ENSMUST00000120056.8	chr16	-	2440	5	FSM	ENSMUSG00000063445.15	ENSMUST00000120056.8	2440	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGAAACTTTTGTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	4536973	4527922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_4529468_4531503_4531695_4532280_4532531_4534160_4534400_4536758
ENSMUST00000120088.2	chr6	+	1566	1	FSM	ENSMUSG00000083443.2	ENSMUST00000120088.2	1566	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGCTCCATGGCTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	112540602	112542168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_112540600_112542200
ENSMUST00000120093.2	chr6	+	321	1	FSM	ENSMUSG00000071141.8	ENSMUST00000120093.2	321	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	625	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTGTTCTCTGAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	136465804	136466125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_136465800_136466100
ENSMUST00000120105.8	chr2	-	1565	7	FSM	ENSMUSG00000009555.17	ENSMUST00000120105.8	1565	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAAATGGCTGCGTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	32602279	32597455	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_32598302_32599478_32599628_32599784_32599957_32600054_32600222_32600488_32600580_32602042_32602125_32602221
ENSMUST00000120130.2	chr11	+	312	1	FSM	ENSMUSG00000084168.4	ENSMUST00000120130.2	312	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCAATCTTTAACTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	97658885	97659197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_97658900_97659200
ENSMUST00000120149.2	chr1	-	891	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3282	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTTAACCTAATTAAACA	NA	NA	NA	NA	NA	NA	NA	NA	86837405	86836514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_86836500_86837400
ENSMUST00000120173.9	chr9	+	2294	6	FSM	ENSMUSG00000038145.18	ENSMUST00000120173.9	4758	6	15	2449	15	-2449	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTGACCCGGTGAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	121946383	121996319	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_121946474_121965971_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
ENSMUST00000120197.2	chr3	+	444	1	FSM	ENSMUSG00000083627.2	ENSMUST00000120197.2	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCAAGGCCCCGGCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	107927200	107927644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_107927200_107927600
ENSMUST00000120201.8	chrX	-	1859	7	FSM	ENSMUSG00000031310.17	ENSMUST00000120201.8	1859	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCAGCCTCTCCTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	100463415	100458535	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463303
ENSMUST00000120213.9	chr8	-	1498	11	FSM	ENSMUSG00000031667.17	ENSMUST00000120213.9	2200	11	28	674	28	296	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGAGTGCAGCACTTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	91860597	91850800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91858550_91858632_91860527
ENSMUST00000120222.8	chr17	+	2926	7	FSM	ENSMUSG00000071266.14	ENSMUST00000120222.8	2926	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGGTTGTTTTAAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	22643239	22675670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_22643411_22647461_22647547_22663148_22663273_22665777_22665875_22670077_22670134_22672432_22672560_22673404
ENSMUST00000120234.2	chr4	+	636	1	FSM	ENSMUSG00000066315.10	ENSMUST00000120234.2	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTGGAGAGTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	10848419	10849055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_10848400_10849100
ENSMUST00000120240.8	chr6	+	1195	9	FSM	ENSMUSG00000029993.17	ENSMUST00000120240.8	1195	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	NA	NA	NA	NA	NA	NA	NA	86986217	87005443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_86986372_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997825_87000109_87000171_87002467_87002643_87005276
ENSMUST00000120276.9	chr17	-	4486	13	FSM	ENSMUSG00000024002.19	ENSMUST00000120276.9	4486	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCATGGAACCCTTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	32503083	32423883	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_32425968_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32472014_32472175_32503036
ENSMUST00000120281.8	chr10	-	1793	9	FSM	ENSMUSG00000000901.18	ENSMUST00000120281.8	1793	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	75768309	75759055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_75759325_75759792_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
ENSMUST00000120290.2	chr16	-	325	1	FSM	ENSMUSG00000084304.2	ENSMUST00000120290.2	325	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTTTTCTGTATGGGAT	NA	NA	NA	NA	NA	NA	NA	NA	4138544	4138219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_4138200_4138500
ENSMUST00000120306.8	chr11	-	1739	6	FSM	ENSMUSG00000049680.18	ENSMUST00000120306.8	3972	6	126	2107	126	-1393	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGACTTTGAGGAGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	5712245	5667077	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_5668264_5672801_5672841_5673110_5673162_5676347_5676419_5676830_5676858_5711880
ENSMUST00000120318.2	chr2	-	493	1	FSM	ENSMUSG00000087701.5	ENSMUST00000120318.2	493	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCTTTTGACTTTCGGG	NA	NA	NA	NA	NA	NA	NA	NA	51761630	51761137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_51761100_51761600
ENSMUST00000120334.2	chr2	-	655	1	FSM	ENSMUSG00000082519.2	ENSMUST00000120334.2	655	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	427	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAAAAAGTTACCATG	NA	NA	NA	NA	NA	NA	NA	NA	173889066	173888411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_173888400_173889100
ENSMUST00000120356.8	chrX	+	1520	6	FSM	ENSMUSG00000001127.13	ENSMUST00000120356.8	1520	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCTTTCTCCAACTATCT	NA	NA	NA	NA	NA	NA	NA	NA	20714816	20719128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
ENSMUST00000120360.2	chr1	-	654	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5024	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGCTCCAATAAACCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	65033763	65033109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_65033100_65033800
ENSMUST00000120367.8	chr9	-	2885	11	FSM	ENSMUSG00000031969.17	ENSMUST00000120367.8	2885	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCATGTTACGTGTATG	NA	NA	NA	NA	NA	NA	NA	NA	26910862	26885430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901489_26901874_26901989_26902535_26902706_26903455_26903557_26910689
ENSMUST00000120377.8	chr3	-	2021	10	FSM	ENSMUSG00000028063.16	ENSMUST00000120377.8	2021	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGCCCTGGCCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	88410614	88390511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88410054
ENSMUST00000120410.2	chr4	+	543	1	FSM	ENSMUSG00000080772.2	ENSMUST00000120410.2	543	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACCCCTGTGAAGGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	59833676	59834219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_59833700_59834200
ENSMUST00000120413.2	chr1	-	646	1	FSM	ENSMUSG00000081643.2	ENSMUST00000120413.2	646	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCGCTTCCTCTCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	63404524	63403878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_63403900_63404500
ENSMUST00000120415.8	chr1	-	621	5	FSM	ENSMUSG00000061816.16	ENSMUST00000120415.8	621	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGAAATCCCATGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	66974492	66965224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_66965445_66965692_66965867_66969344_66969489_66973676_66973702_66974434
ENSMUST00000120418.2	chr2	-	567	1	FSM	ENSMUSG00000083716.5	ENSMUST00000120418.2	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	861	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGATCTTAACTGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	36698404	36697837	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_36697800_36698400
ENSMUST00000120421.2	chr15	-	648	1	FSM	ENSMUSG00000082585.4	ENSMUST00000120421.2	648	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTTCTAGCGCAGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	73966182	73965534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_73965500_73966200
ENSMUST00000120430.2	chr8	-	1597	1	FSM	ENSMUSG00000101431.2	ENSMUST00000120430.2	1597	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	523	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGACCCTGGGGTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	76439824	76438227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_76438200_76439800
ENSMUST00000120432.3	chr8	-	1976	11	FSM	ENSMUSG00000012519.15	ENSMUST00000120432.3	1976	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTGTCAAAGTTCTTAT	NA	NA	NA	NA	NA	NA	NA	NA	112064809	112038431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_112038710_112041596_112041738_112042124_112042175_112042994_112043147_112046009_112046086_112046348_112046485_112049334_112049433_112054446_112054631_112058448_112058523_112059953_112060387_112064455
ENSMUST00000120435.2	chr4	+	630	1	FSM	ENSMUSG00000081975.2	ENSMUST00000120435.2	630	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTTGACAGCGAAGACAA	NA	NA	NA	NA	NA	NA	NA	NA	52821487	52822117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_52821500_52822100
ENSMUST00000120437.2	chr2	-	210	1	FSM	ENSMUSG00000081700.2	ENSMUST00000120437.2	210	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGCGTCAGCAAACTTG	NA	NA	NA	NA	NA	NA	NA	NA	173826484	173826274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_173826300_173826500
ENSMUST00000120450.2	chr16	-	1865	11	FSM	ENSMUSG00000022962.16	ENSMUST00000120450.2	1865	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTTGATTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	91443823	91430292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
ENSMUST00000120455.2	chr2	-	306	1	FSM	ENSMUSG00000084067.4	ENSMUST00000120455.2	306	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	216	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTCTTTTTATTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	170305739	170305433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_170305400_170305700
ENSMUST00000120512.8	chr6	+	1871	4	FSM	ENSMUSG00000041390.19	ENSMUST00000120512.8	1871	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATGTAGAACACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	15721085	15800807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_15721364_15740986_15741110_15770212_15770492_15799616
ENSMUST00000120557.2	chrX	+	1210	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCCAGGACCACTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	13068809	13070019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_13068800_13070000
ENSMUST00000120566.2	chr11	-	1848	1	FSM	ENSMUSG00000082454.4	ENSMUST00000120566.2	1848	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTTTAGAAGTATATGTAA	NA	NA	NA	NA	NA	NA	NA	NA	48644541	48642693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_48642700_48644500
ENSMUST00000120590.2	chr2	-	310	1	FSM	ENSMUSG00000082417.2	ENSMUST00000120590.2	310	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAGAAAAGGCTCCTACC	NA	NA	NA	NA	NA	NA	NA	NA	87377546	87377236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_87377200_87377500
ENSMUST00000120595.8	chr7	+	2255	19	FSM	ENSMUSG00000040811.16	ENSMUST00000120595.8	2255	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAGTCTGGTCTATT	NA	NA	NA	NA	NA	NA	NA	NA	18915094	18940407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_18915149_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
ENSMUST00000120632.2	chr18	-	2081	10	FSM	ENSMUSG00000024500.21	ENSMUST00000120632.2	2081	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAACACTGTTTACT	NA	NA	NA	NA	NA	NA	NA	NA	43032708	42778358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_42779073_42781738_42781831_42796174_42796345_42821366_42821532_42834534_42834713_42864851_42864965_42870965_42871132_42874160_42874259_43031809_43032004_43032517
ENSMUST00000120658.2	chr2	-	433	1	FSM	ENSMUSG00000082345.2	ENSMUST00000120658.2	433	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGGTATGTGTTAATAAAA	NA	NA	NA	NA	NA	NA	NA	NA	69568133	69567700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_69567700_69568100
ENSMUST00000120664.8	chr13	+	4207	10	FSM	ENSMUSG00000021699.18	ENSMUST00000120664.8	4207	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAATATGAATAAAA	NA	NA	NA	NA	NA	NA	NA	NA	110039639	110089995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_110040224_110070401_110070496_110071839_110072013_110073210_110073310_110074500_110074666_110075795_110075896_110084773_110084929_110085947_110086071_110086742_110086926_110087464
ENSMUST00000120667.2	chr16	+	263	2	FSM	ENSMUSG00000022724.16	ENSMUST00000120667.2	2200	2	0	1937	0	-1937	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTAAACTTTGACAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	59292166	59295993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_59292309_59295872
ENSMUST00000120699.8	chr11	+	746	4	FSM	ENSMUSG00000020843.16	ENSMUST00000120699.8	746	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGAGGTGGTATGGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	76297777	76305155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_76297970_76300467_76300665_76301952_76302026_76304871
ENSMUST00000120707.2	chr16	-	1414	5	FSM	ENSMUSG00000022677.16	ENSMUST00000120707.2	1414	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	14135211	14117107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_14118074_14122317_14122429_14128910_14128996_14131679_14131878_14135157
ENSMUST00000120714.2	chr7	-	767	6	FSM	ENSMUSG00000030417.16	ENSMUST00000120714.2	767	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGGTGTTTCAGAATCA	NA	NA	NA	NA	NA	NA	NA	NA	35346634	35341436	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_35341611_35342039_35342112_35343048_35343141_35343775_35343838_35345568_35345607_35346305
ENSMUST00000120718.2	chr11	+	1449	1	FSM	ENSMUSG00000084347.4	ENSMUST00000120718.2	1449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCCCTCTGCCACCACAG	NA	NA	NA	NA	NA	NA	NA	NA	16464532	16465981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_16464500_16466000
ENSMUST00000120725.2	chr8	+	1641	9	FSM	ENSMUSG00000046295.14	ENSMUST00000120725.2	1641	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGACAGTGTGTTTTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	71858667	71862127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859916_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
ENSMUST00000120737.8	chr17	+	1017	7	FSM	ENSMUSG00000034729.17	ENSMUST00000120737.8	1017	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTGGTTTTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	47679811	47689604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_47679880_47683351_47683417_47683500_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
ENSMUST00000120770.2	chr2	+	555	1	FSM	ENSMUSG00000075391.7	ENSMUST00000120770.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGGGAGAATGTGCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	35230420	35230975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_35230400_35231000
ENSMUST00000120779.8	chr4	-	2006	10	FSM	ENSMUSG00000032897.18	ENSMUST00000120779.8	2006	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	NA	NA	NA	NA	NA	NA	NA	120672909	120614634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120672658
ENSMUST00000120826.2	chr8	+	1545	1	FSM	ENSMUSG00000071041.5	ENSMUST00000120826.2	1545	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2310	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGATCCAGTATATGCC	NA	NA	NA	NA	NA	NA	NA	NA	100757189	100758734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_100757200_100758700
ENSMUST00000120827.9	chr5	-	1217	2	FSM	ENSMUSG00000059325.15	ENSMUST00000120827.9	1217	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGGAGTCTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	77243100	77234834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_77235664_77242712
ENSMUST00000120833.2	chr2	+	573	1	FSM	ENSMUSG00000083619.4	ENSMUST00000120833.2	573	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	177	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTAACTCGTAGTGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	177152067	177152640	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_177152100_177152600
ENSMUST00000120838.2	chr4	-	459	1	FSM	ENSMUSG00000083914.4	ENSMUST00000120838.2	459	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGGCCTTTGCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	71289433	71288974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_71289000_71289400
ENSMUST00000120847.8	chr5	+	2404	3	FSM	ENSMUSG00000046079.17	ENSMUST00000120847.8	3929	3	77	1448	77	-1448	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAACATCTGAAGCGACT	NA	NA	NA	NA	NA	NA	NA	NA	105848731	105961628	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_105848952_105880095_105880241_105959589
ENSMUST00000120862.2	chr2	+	969	1	FSM	ENSMUSG00000085401.3	ENSMUST00000120862.2	969	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGCTTCAGGAGAAAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	30049409	30050378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_30049400_30050400
ENSMUST00000120867.8	chr5	-	1234	7	FSM	ENSMUSG00000015806.13	ENSMUST00000120867.8	1234	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	NA	NA	NA	NA	NA	NA	NA	45607307	45591394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607223
ENSMUST00000120873.2	chr2	-	610	1	FSM	ENSMUSG00000083915.2	ENSMUST00000120873.2	610	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTTCTAGCACAGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	109622879	109622269	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_109622300_109622900
ENSMUST00000120879.8	chr7	+	1218	7	FSM	ENSMUSG00000030990.19	ENSMUST00000120879.8	2141	7	10	913	10	-109	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCCACCACTCATGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	101859578	101886861	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_101859799_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
ENSMUST00000120888.2	chrX	-	464	1	FSM	ENSMUSG00000083474.2	ENSMUST00000120888.2	464	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTGCCATGAGTGATTCC	NA	NA	NA	NA	NA	NA	NA	NA	150826508	150826044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_150826000_150826500
ENSMUST00000120912.8	chr5	+	2345	10	FSM	ENSMUSG00000029247.18	ENSMUST00000120912.8	2345	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCTGTGTGGTCTATA	NA	NA	NA	NA	NA	NA	NA	NA	77099194	77115356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_77099516_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUST00000120928.2	chr11	+	835	4	FSM	ENSMUSG00000048277.16	ENSMUST00000120928.2	1402	4	16	551	16	-94	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAGTACTGTAGATAGG	NA	NA	NA	NA	NA	NA	NA	NA	117700537	117704558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_117700630_117703374_117703523_117703871_117704012_117704103
ENSMUST00000120931.2	chr16	+	205	1	FSM	ENSMUSG00000082241.5	ENSMUST00000120931.2	205	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCAGCTATCTTGAGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	22113776	22113981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_22113800_22114000
ENSMUST00000120938.2	chr15	-	390	1	FSM	ENSMUSG00000083380.2	ENSMUST00000120938.2	390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGCAAGAATGACTATT	NA	NA	NA	NA	NA	NA	NA	NA	73681745	73681355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_73681400_73681700
ENSMUST00000120959.8	chr2	-	1458	4	FSM	ENSMUSG00000078881.11	ENSMUST00000120959.8	1458	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATCAGTGTAAGAAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	176178566	176166422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_176167595_176167799_176167927_176174950_176175006_176178462
ENSMUST00000120980.2	chr2	-	662	2	FSM	ENSMUSG00000081999.4	ENSMUST00000120980.2	662	2	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGTGAAGCTGGAGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	41878841	41877484	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_41878030_41878724
ENSMUST00000120984.9	chr14	-	471	3	FSM	ENSMUSG00000021768.16	ENSMUST00000120984.9	976	3	125	380	125	-126	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGACACTGGTAGATGC	NA	NA	NA	NA	NA	NA	NA	NA	21790344	21783842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_21783920_21784963_21785185_21790171
ENSMUST00000121001.2	chr5	-	555	1	FSM	ENSMUSG00000081855.5	ENSMUST00000121001.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	22818180	22817625	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_22817600_22818200
ENSMUST00000121023.2	chr2	-	301	1	FSM	ENSMUSG00000081541.2	ENSMUST00000121023.2	301	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTCAACTAATGAAAGTAAA	NA	NA	NA	NA	NA	NA	NA	NA	112219842	112219541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_112219500_112219800
ENSMUST00000121046.2	chr6	-	519	1	FSM	ENSMUSG00000084319.4	ENSMUST00000121046.2	519	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	256	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTGGATCTATCACCTG	NA	NA	NA	NA	NA	NA	NA	NA	99855295	99854776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_99854800_99855300
ENSMUST00000121059.2	chr1	+	591	1	FSM	ENSMUSG00000064281.8	ENSMUST00000121059.2	591	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3663	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCCCTTGTGTCTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	84989834	84990425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_84989800_84990400
ENSMUST00000121075.8	chr8	+	1740	5	FSM	ENSMUSG00000031543.19	ENSMUST00000121075.8	1740	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGAAACACGTTAGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	23629045	23639295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_23629512_23630160_23630245_23631179_23631246_23631611_23631737_23638296
ENSMUST00000121087.2	chr6	-	447	1	FSM	ENSMUSG00000081113.2	ENSMUST00000121087.2	447	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGACACTGTACAGAATG	NA	NA	NA	NA	NA	NA	NA	NA	127259472	127259025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_127259000_127259500
ENSMUST00000121093.8	chr6	+	2597	13	FSM	ENSMUSG00000034930.17	ENSMUST00000121093.8	2597	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	83114069	83129560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_83114438_83114941_83115228_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
ENSMUST00000121101.2	chr8	+	520	2	FSM	ENSMUSG00000050079.11	ENSMUST00000121101.2	3092	2	88	2484	0	-2484	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGTCTTTGGTTGGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	95328693	95349616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_95329059_95349461
ENSMUST00000121112.6	chr3	-	1447	4	FSM	ENSMUSG00000028266.18	ENSMUST00000121112.6	1447	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATGAAGAAAAAAATCTTT	NA	NA	NA	NA	NA	NA	NA	NA	143908093	143894392	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_143895067_143899656_143899813_143900167_143900265_143907573
ENSMUST00000121112.6-0	chr3	-	1143	4	FSM	ENSMUSG00000028266.18	ENSMUST00000121112.6	1447	4	304	0	304	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATGAAGAAAAAAATCTTT	NA	NA	NA	NA	NA	NA	NA	NA	143907789	143894392	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_143895067_143899656_143899813_143900167_143900265_143907573
ENSMUST00000121152.2	chrX	-	470	1	FSM	ENSMUSG00000081620.2	ENSMUST00000121152.2	470	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAAATGATCA	NA	NA	NA	NA	NA	NA	NA	NA	55493717	55493247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_55493200_55493700
ENSMUST00000121161.8	chr10	+	1344	4	FSM	ENSMUSG00000020053.19	ENSMUST00000121161.8	1344	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCTTTAGGAGTGTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	87696467	87766761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_87697248_87700592_87700750_87749480_87749663_87766536
ENSMUST00000121185.8	chr11	-	911	4	FSM	ENSMUSG00000020738.17	ENSMUST00000121185.8	911	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	115426643	115413927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426604
ENSMUST00000121187.2	chr4	-	315	1	FSM	ENSMUSG00000075390.6	ENSMUST00000121187.2	315	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCCTCCCCCAATAAAA	NA	NA	NA	NA	NA	NA	NA	NA	116697418	116697103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_116697100_116697400
ENSMUST00000121208.3	chr4	+	462	1	FSM	ENSMUSG00000095588.2	ENSMUST00000121208.3	462	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAGAAATTCAAGCTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	34485831	34486293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_34485800_34486300
ENSMUST00000121251.2	chrX	+	591	1	FSM	ENSMUSG00000082109.2	ENSMUST00000121251.2	591	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGCTTCCCTCGTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	5983275	5983866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_5983300_5983900
ENSMUST00000121261.2	chr14	-	471	1	FSM	ENSMUSG00000084276.2	ENSMUST00000121261.2	471	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGTATGCGTTAATAAAA	NA	NA	NA	NA	NA	NA	NA	NA	46096003	46095532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_46095500_46096000
ENSMUST00000121273.2	chr9	+	873	7	FSM	ENSMUSG00000074179.12	ENSMUST00000121273.2	873	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCTCCTCATAAGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	78197209	78212806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_78197285_78202065_78202175_78205380_78205433_78206218_78206352_78209967_78210110_78211653_78211786_78212576
ENSMUST00000121304.2	chr10	-	1622	9	FSM	ENSMUSG00000000902.14	ENSMUST00000121304.2	1622	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTTCTGTGCAGTAGCA	NA	NA	NA	NA	NA	NA	NA	NA	75757448	75732610	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752633_75752746_75757136
ENSMUST00000121309.2	chr2	+	483	1	FSM	ENSMUSG00000084383.2	ENSMUST00000121309.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	24875995	24876478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_24876000_24876500
ENSMUST00000121320.2	chr2	-	171	1	FSM	ENSMUSG00000081344.6	ENSMUST00000121320.2	171	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGACCTTGAATGGATTCGA	NA	NA	NA	NA	NA	NA	NA	NA	172351611	172351440	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_172351400_172351600
ENSMUST00000121321.2	chr19	-	642	1	FSM	ENSMUSG00000080885.2	ENSMUST00000121321.2	642	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	407	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCTTCAATAGTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	37273195	37272553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_37272600_37273200
ENSMUST00000121334.8	chr11	+	1735	10	FSM	ENSMUSG00000018398.19	ENSMUST00000121334.8	2801	10	30	1036	0	-1036	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTAGGACCGAGGCCCCT	NA	NA	NA	NA	NA	NA	NA	NA	53410626	53439356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_53410867_53422822_53422944_53425259_53425456_53425775_53425963_53426774_53426937_53427478_53427576_53427980_53428150_53428313_53428447_53428551_53428743_53439117
ENSMUST00000121360.8	chr6	+	1188	6	FSM	ENSMUSG00000029911.15	ENSMUST00000121360.8	1188	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	40448401	40457929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUST00000121416.8	chr5	+	2380	8	FSM	ENSMUSG00000041264.17	ENSMUST00000121416.8	3792	8	0	1412	0	-1240	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAGGAATTGAAGTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	149121159	149150826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
ENSMUST00000121429.8	chrX	-	1890	7	FSM	ENSMUSG00000031310.17	ENSMUST00000121429.8	1890	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCAGCCTCTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	100464291	100458538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100464145
ENSMUST00000121442.2	chr4	-	491	3	FSM	ENSMUSG00000040795.13	ENSMUST00000121442.2	491	3	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGACTTGTTTTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	129512889	129511891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_129512156_129512284_129512429_129512806
ENSMUST00000121451.2	chr11	+	379	1	FSM	ENSMUSG00000081631.2	ENSMUST00000121451.2	379	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACATTGGTCTGCAATGT	NA	NA	NA	NA	NA	NA	NA	NA	14112078	14112457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_14112100_14112500
ENSMUST00000121454.2	chr11	-	361	1	FSM	ENSMUSG00000080981.2	ENSMUST00000121454.2	361	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCTGGTAGCTTACCAG	NA	NA	NA	NA	NA	NA	NA	NA	45171781	45171420	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_45171400_45171800
ENSMUST00000121455.3	chr11	+	2255	2	FSM	ENSMUSG00000083899.3	ENSMUST00000121455.3	2255	2	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCAGAACTATGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	77184269	77186724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_77185700_77185899
ENSMUST00000121490.2	chr6	+	1236	1	FSM	ENSMUSG00000029633.10	ENSMUST00000121490.2	1236	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTCTGTCACTCACTGC	NA	NA	NA	NA	NA	NA	NA	NA	112582504	112583740	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_112582500_112583700
ENSMUST00000121503.8	chr3	+	1139	10	FSM	ENSMUSG00000027940.19	ENSMUST00000121503.8	1139	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCACGGCCTCTTGCATT	NA	NA	NA	NA	NA	NA	NA	NA	89979955	89999437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89980158_89981026_89981153_89993752_89993887_89994761_89994880_89994980_89995052_89996354_89996431_89997103_89997167_89997316_89997387_89998319_89998399_89999237
ENSMUST00000121532.8	chr7	-	915	6	FSM	ENSMUSG00000060538.15	ENSMUST00000121532.8	915	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTGTAAGGTACTTAC	NA	NA	NA	NA	NA	NA	NA	NA	126497425	126485391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197_126496397_126497395
ENSMUST00000121545.2	chrX	-	483	1	FSM	ENSMUSG00000083596.5	ENSMUST00000121545.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	149998645	149998162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_149998200_149998600
ENSMUST00000121547.2	chr11	+	456	1	FSM	ENSMUSG00000081929.2	ENSMUST00000121547.2	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGACTCTGGCCAATGCCC	NA	NA	NA	NA	NA	NA	NA	NA	116273575	116274031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_116273600_116274000
ENSMUST00000121572.2	chr2	+	624	1	FSM	ENSMUSG00000084323.5	ENSMUST00000121572.2	624	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	276	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCACTCGTAGTGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	175112348	175112972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_175112300_175113000
ENSMUST00000121574.2	chr2	-	684	1	FSM	ENSMUSG00000083287.5	ENSMUST00000121574.2	684	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTGTAAATGATTTGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	53586816	53586132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_53586100_53586800
ENSMUST00000121651.8	chr4	+	620	5	FSM	ENSMUSG00000042198.13	ENSMUST00000121651.8	620	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACATGTTTTGGGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	3938913	3943521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_3939132_3939423_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUST00000121654.2	chr4	-	768	1	FSM	ENSMUSG00000080969.2	ENSMUST00000121654.2	768	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGCCTAGATGCATGTAA	NA	NA	NA	NA	NA	NA	NA	NA	37139874	37139106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_37139100_37139900
ENSMUST00000121655.2	chr5	-	1293	1	FSM	ENSMUSG00000080935.4	ENSMUST00000121655.2	1293	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	345	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCCAGGTGCGAAGGAACA	NA	NA	NA	NA	NA	NA	NA	NA	138363814	138362521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_138362500_138363800
ENSMUST00000121658.2	chr2	-	1000	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAACCCTGGACCACCCA	NA	NA	NA	NA	NA	NA	NA	NA	28824621	28823621	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_28823600_28824600
ENSMUST00000121667.2	chrX	+	1250	1	FSM	ENSMUSG00000083736.2	ENSMUST00000121667.2	1250	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTACTTAAAAACACTTAGAG	NA	NA	NA	NA	NA	NA	NA	NA	74276668	74277918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_74276700_74277900
ENSMUST00000121674.9	chr18	-	2778	10	FSM	ENSMUSG00000038425.19	ENSMUST00000121674.9	2778	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGCTCTCACTGTAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	70663691	70641753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70663258
ENSMUST00000121688.2	chr11	+	180	1	FSM	ENSMUSG00000082646.2	ENSMUST00000121688.2	180	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCGCCAGTGTACTTGTAAA	NA	NA	NA	NA	NA	NA	NA	NA	77530679	77530859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_77530700_77530900
ENSMUST00000121713.2	chr6	+	882	1	FSM	ENSMUSG00000072789.5	ENSMUST00000121713.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	122672959	122673841	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_122673000_122673800
ENSMUST00000121722.2	chr4	-	873	1	FSM	ENSMUSG00000082762.2	ENSMUST00000121722.2	873	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	946	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGTTTTTATATGAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	35202975	35202102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_35202100_35203000
ENSMUST00000121742.2	chr2	-	464	1	FSM	ENSMUSG00000084178.2	ENSMUST00000121742.2	464	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTGTGTATGCGTTAATA	NA	NA	NA	NA	NA	NA	NA	NA	145352577	145352113	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_145352100_145352600
ENSMUST00000121746.8	chr5	-	1568	3	FSM	ENSMUSG00000041609.17	ENSMUST00000121746.8	1568	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACCTTGTGCCTCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	115791040	115786238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_115787629_115789877_115789999_115790983
ENSMUST00000121750.2	chr16	-	2614	4	FSM	ENSMUSG00000065979.13	ENSMUST00000121750.2	2614	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAAATAAAAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	11727286	11621590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_11623448_11646038_11646462_11705441_11705619_11727129
ENSMUST00000121752.2	chr2	+	1428	1	FSM	ENSMUSG00000063684.10	ENSMUST00000121752.2	1428	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTCTAGAAGGAGGCGAC	NA	NA	NA	NA	NA	NA	NA	NA	108779150	108780578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_108779200_108780600
ENSMUST00000121768.2	chrX	+	523	1	FSM	ENSMUSG00000084284.2	ENSMUST00000121768.2	523	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTGGATCTATCACCTG	NA	NA	NA	NA	NA	NA	NA	NA	100812140	100812663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_100812100_100812700
ENSMUST00000121779.2	chr2	-	333	1	FSM	ENSMUSG00000083424.4	ENSMUST00000121779.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	108705603	108705270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_108705300_108705600
ENSMUST00000121783.7	chr8	-	1945	5	FSM	ENSMUSG00000015341.18	ENSMUST00000121783.7	1945	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAACCCTCTCTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	23747037	23731368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689
ENSMUST00000121788.2	chr6	+	438	1	FSM	ENSMUSG00000071419.8	ENSMUST00000121788.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1415	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAGGCCAATAAAGACTGG	NA	NA	NA	NA	NA	NA	NA	NA	57994490	57994928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_57994500_57994900
ENSMUST00000121821.2	chr5	-	636	1	FSM	ENSMUSG00000084111.5	ENSMUST00000121821.2	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1785	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTGGAGAGTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	92288788	92288152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_92288200_92288800
ENSMUST00000121822.2	chr7	-	348	1	FSM	ENSMUSG00000083669.6	ENSMUST00000121822.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	477	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCCCCACTTACCTG	NA	NA	NA	NA	NA	NA	NA	NA	29664990	29664642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_29664600_29665000
ENSMUST00000121833.2	chr6	+	994	1	FSM	ENSMUSG00000083620.2	ENSMUST00000121833.2	994	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTAAAAATTATTTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	12857395	12858389	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_12857400_12858400
ENSMUST00000121866.2	chr4	+	365	1	FSM	ENSMUSG00000083852.2	ENSMUST00000121866.2	365	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGTCTGGATTCCTTATT	NA	NA	NA	NA	NA	NA	NA	NA	135724833	135725198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_135724800_135725200
ENSMUST00000121903.2	chr6	+	935	6	FSM	ENSMUSG00000047115.16	ENSMUST00000121903.2	1304	6	73	296	6	-296	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGGCTTAGCTTATTGAA	NA	NA	NA	NA	NA	NA	NA	NA	49344829	49365918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355537_49359896_49360014_49365750
ENSMUST00000121924.2	chrX	+	1257	1	FSM	ENSMUSG00000083307.2	ENSMUST00000121924.2	1257	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTAGACTGTGGTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	12803110	12804367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_12803100_12804400
ENSMUST00000121931.8	chr3	+	2112	13	FSM	ENSMUSG00000068917.13	ENSMUST00000121931.8	2112	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCCCCAATCCCTGGAAT	NA	NA	NA	NA	NA	NA	NA	NA	89072146	89084228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89072414_89074341_89074512_89076001_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ENSMUST00000121934.2	chr2	+	386	1	FSM	ENSMUSG00000081967.2	ENSMUST00000121934.2	386	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGGAAATGTGTCACCCT	NA	NA	NA	NA	NA	NA	NA	NA	121311609	121311995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_121311600_121312000
ENSMUST00000121959.3	chr17	-	1029	6	FSM	ENSMUSG00000073433.12	ENSMUST00000121959.3	1029	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGCCTGTGTGCTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	26420343	26418160	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26418504_26418586_26418651_26418743_26418803_26418988_26419073_26419164_26419345_26420044
ENSMUST00000121965.2	chr4	+	483	1	FSM	ENSMUSG00000083179.4	ENSMUST00000121965.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTGTCCCAGTCTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	94823857	94824340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_94823900_94824300
ENSMUST00000121967.2	chr2	-	279	1	FSM	ENSMUSG00000082044.2	ENSMUST00000121967.2	279	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	398	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGAATGGTGACGCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	131164286	131164007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_131164000_131164300
ENSMUST00000121971.2	chr11	-	155	1	FSM	ENSMUSG00000082099.2	ENSMUST00000121971.2	155	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATTCTCACAATGGCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	17045644	17045489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_17045500_17045600
ENSMUST00000121998.2	chr6	+	354	1	FSM	ENSMUSG00000068396.10	ENSMUST00000121998.2	354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCACATTTTTTAAGTA	NA	NA	NA	NA	NA	NA	NA	NA	71101593	71101947	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_71101600_71101900
ENSMUST00000122014.8	chr16	+	1307	8	ISM	ENSMUSG00000022701.19	ENSMUST00000178400.9	3745	16	140	25221	140	-25221	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCATCAGGTATCGGTC	NA	NA	NA	NA	NA	NA	NA	NA	43710302	43759456	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276
ENSMUST00000122039.2	chrX	-	465	1	FSM	ENSMUSG00000100104.2	ENSMUST00000122039.2	465	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGCACTGCAGAAATGAA	NA	NA	NA	NA	NA	NA	NA	NA	144385297	144384832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_144384800_144385300
ENSMUST00000122055.2	chr7	-	609	2	FSM	ENSMUSG00000044709.7	ENSMUST00000122055.2	609	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGCAGATAACCCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	19307014	19299043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_19299602_19306963
ENSMUST00000122067.8	chr11	+	1081	11	FSM	ENSMUSG00000020486.20	ENSMUST00000122067.8	1303	11	60	162	60	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTTTTGGACCTGAATA	NA	NA	NA	NA	NA	NA	NA	NA	87469309	87481201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_87469364_87474746_87474841_87475224_87475312_87475943_87476068_87479543_87479679_87479793_87479912_87480000_87480103_87480293_87480391_87480481_87480645_87480834_87480882_87481141
ENSMUST00000122101.8	chr7	+	3233	3	FSM	ENSMUSG00000055407.15	ENSMUST00000122101.8	3233	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGTGTCTCTGGCTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	98916653	98986343	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_98918521_98964895_98965110_98985191
ENSMUST00000122127.2	chr7	-	652	2	FSM	ENSMUSG00000044709.7	ENSMUST00000122127.2	652	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGATCATAAACTCAAGG	NA	NA	NA	NA	NA	NA	NA	NA	19306893	19299011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_19299602_19306831
ENSMUST00000122128.2	chr3	+	1608	15	FSM	ENSMUSG00000027998.12	ENSMUST00000122128.2	1608	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATGGCTGTCCTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	82962861	82979479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966661_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
ENSMUST00000122129.8	chr4	-	3249	18	FSM	ENSMUSG00000028849.18	ENSMUST00000122129.8	3249	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	NA	NA	NA	NA	NA	NA	NA	126150070	126125959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126130853_126130948_126131072_126132314_126132426_126133815_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ENSMUST00000122133.2	chr2	+	279	1	FSM	ENSMUSG00000081751.2	ENSMUST00000122133.2	279	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCTGCTGTCTGAGACT	NA	NA	NA	NA	NA	NA	NA	NA	156164321	156164600	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_156164300_156164600
ENSMUST00000122168.8	chr16	+	2096	11	FSM	ENSMUSG00000071669.15	ENSMUST00000122168.8	2096	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAAAAAAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	11224520	11479419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_11224761_11231089_11231221_11236686_11236763_11238564_11238648_11263028_11263093_11265243_11265373_11328823_11328907_11389562_11389670_11449321_11449439_11473999_11474056_11478409
ENSMUST00000122180.2	chr11	-	951	1	FSM	ENSMUSG00000082087.5	ENSMUST00000122180.2	951	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	543	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGGCGAGCGGATCCC	NA	NA	NA	NA	NA	NA	NA	NA	40564683	40563732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_40563700_40564700
ENSMUST00000122202.8	chr7	-	1336	7	FSM	ENSMUSG00000061479.16	ENSMUST00000122202.8	1336	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	26895670	26886431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895418
ENSMUST00000122204.3	chr5	+	774	1	FSM	ENSMUSG00000033036.10	ENSMUST00000122204.3	774	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAACAACAACAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	44070485	44071259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_44070500_44071300
ENSMUST00000122206.2	chr16	-	555	1	FSM	ENSMUSG00000081651.2	ENSMUST00000122206.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTTTAAAATGGACAGAA	NA	NA	NA	NA	NA	NA	NA	NA	38506231	38505676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_38505700_38506200
ENSMUST00000122218.9	chr2	+	408	4	NNC	ENSMUSG00000078876.11	novel	279	3	NA	NA	0	68	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACATTCTTGAGTTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	176522932	176528523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_+_176522936_176526678_176526806_176526998_176527060_176528306
ENSMUST00000122243.2	chr1	-	228	1	FSM	ENSMUSG00000081562.2	ENSMUST00000122243.2	228	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATAACATTATTGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	60562225	60561997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_60562000_60562200
ENSMUST00000122265.2	chrX	-	345	1	FSM	ENSMUSG00000085791.5	ENSMUST00000122265.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	104322587	104322242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_104322200_104322600
ENSMUST00000122266.3	chr1	+	595	4	FSM	ENSMUSG00000026207.17	ENSMUST00000122266.3	917	4	0	322	0	-105	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCAGCCGGCTCGCCGGCC	NA	NA	NA	NA	NA	NA	NA	NA	75377653	75380529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_75377875_75378106_75378196_75378941_75379118_75380420
ENSMUST00000122290.2	chr3	+	625	5	FSM	ENSMUSG00000027673.13	ENSMUST00000122290.2	625	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAAGATTCTGTGGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	32798904	32805379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
ENSMUST00000122292.2	chr16	+	1414	1	FSM	ENSMUSG00000085783.4	ENSMUST00000122292.2	1414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	365	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGGCATTCCCGTGACC	NA	NA	NA	NA	NA	NA	NA	NA	62537399	62538813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_62537400_62538800
ENSMUST00000122299.2	chr3	-	333	1	FSM	ENSMUSG00000081657.2	ENSMUST00000122299.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGACCGCAAAAGGAAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	8947630	8947297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_8947300_8947600
ENSMUST00000122331.2	chr4	-	731	1	FSM	ENSMUSG00000083678.4	ENSMUST00000122331.2	731	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGAGCCGTCCTTGAACT	NA	NA	NA	NA	NA	NA	NA	NA	135443909	135443178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_135443200_135443900
ENSMUST00000122342.2	chr11	+	1791	4	FSM	ENSMUSG00000020834.18	ENSMUST00000122342.2	1791	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGCTCTGGCTCCCGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	77923177	77928690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_77923530_77924838_77924963_77925100_77925413_77927687
ENSMUST00000122365.2	chr16	+	611	6	FSM	ENSMUSG00000098371.2	ENSMUST00000122365.2	611	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAGTAATGAGTCGG	NA	NA	NA	NA	NA	NA	NA	NA	55786705	55801084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55800957
ENSMUST00000122366.2	chr2	+	457	1	FSM	ENSMUSG00000081833.2	ENSMUST00000122366.2	457	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTCTTTCAGCTGTCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	75638701	75639158	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_75638700_75639200
ENSMUST00000122373.2	chr6	+	465	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCCTTTTCCACCATCAG	NA	NA	NA	NA	NA	NA	NA	NA	37783020	37783485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_37783000_37783500
ENSMUST00000122404.2	chr2	+	1354	1	FSM	ENSMUSG00000082809.4	ENSMUST00000122404.2	1354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCATTCCTTGAGCCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	151300875	151302229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_151300900_151302200
ENSMUST00000122418.2	chr2	+	627	1	FSM	ENSMUSG00000082901.2	ENSMUST00000122418.2	627	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCACTCGTAGTGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	177534430	177535057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_177534400_177535100
ENSMUST00000122422.3	chr8	+	591	1	FSM	ENSMUSG00000081094.5	ENSMUST00000122422.3	591	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5635	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCCCTCGTGTCTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	19542951	19543542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_19543000_19543500
ENSMUST00000122426.8	chr5	-	2777	9	FSM	ENSMUSG00000042594.17	ENSMUST00000122426.8	2777	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGTGGCAAGGGACATTCC	NA	NA	NA	NA	NA	NA	NA	NA	121974167	121955072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_121956157_121956278_121956451_121956527_121956743_121956822_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121970565_121970654_121973913
ENSMUST00000122441.2	chr9	+	2081	13	FSM	ENSMUSG00000032307.17	ENSMUST00000122441.2	2081	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTATGAAAGATACCTA	NA	NA	NA	NA	NA	NA	NA	NA	55057366	55114092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_55057686_55070251_55070354_55075486_55075592_55083474_55083532_55087756_55087898_55090385_55090471_55092187_55092249_55092953_55093045_55099125_55099185_55102270_55102320_55102707_55102804_55110984_55111052_55113243
ENSMUST00000122448.8	chr7	-	2212	15	NNC	ENSMUSG00000030849.19	novel	4311	16	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAATGTGTCTTCCTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	129863587	129765688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_129765948_129769432_129769539_129771468_129771607_129773341_129773413_129774546_129774670_129779404_129779596_129782094_129782206_129784370_129784493_129786958_129787111_129797907_129798105_129801487_129801636_129802712_129802904_129820727_129820852_129830352_129830523_129863478
ENSMUST00000122457.2	chrX	-	221	1	FSM	ENSMUSG00000083166.2	ENSMUST00000122457.2	221	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTCAGTCTGCATTCCC	NA	NA	NA	NA	NA	NA	NA	NA	156450781	156450560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_156450600_156450800
ENSMUST00000122548.3	chr15	-	100	1	FSM	ENSMUSG00000084497.3	ENSMUST00000122548.3	100	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCCAACGCAGACTGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	77724956	77724856	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_77724900_77725000
ENSMUST00000122644.3	chr4	-	107	1	FSM	ENSMUSG00000084593.3	ENSMUST00000122644.3	107	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGGCCATGAATCTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	108394794	108394687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_108394700_108394800
ENSMUST00000122878.8	chr4	-	758	4	FSM	ENSMUSG00000028603.16	ENST00000408941.7	1282	4	-1	525	-1	172	multi-exon	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGGGGGACTAGAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	107928560	107901574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_107902043_107904786_107904867_107921082_107921186_107928453
ENSMUST00000122884.2	chr1	+	2578	6	NIC	ENSMUSG00000026240.13	novel	2231	7	NA	NA	42	161	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	86514863	86534700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_+_86514958_86516885_86517064_86520012_86520089_86526724_86526928_86528804_86528911_86532779
ENSMUST00000122899.8	chr17	+	2743	4	FSM	ENSMUSG00000034595.18	ENSMUST00000122899.8	2743	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGCCTTCCTTTGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	36176947	36186488	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_36177121_36178121_36179678_36184617_36184832_36185688
ENSMUST00000122903.2	chr8	-	599	2	ISM	ENSMUSG00000031916.18	ENSMUST00000034391.4	2954	6	2427	6383	2427	-6383	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGGGTGCTGCAGAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	107780889	107779309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_107779673_107780653
ENSMUST00000122993.8	chr10	-	1502	9	FSM	ENSMUSG00000020232.18	ENSMUST00000122993.8	1502	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	81186025	81181884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185437_81185967
ENSMUST00000123087.8	chr2	+	348	3	FSM	ENSMUSG00000063714.16	ENSMUST00000123087.8	583	3	0	235	0	-165	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCAGCAAGCTCTTCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	72809767	72818786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_72809940_72817871_72817977_72818715
ENSMUST00000123115.2	chr9	-	278	2	ISM	ENSMUSG00000032786.17	ENSMUST00000074082.13	2129	11	11173	1590	11047	-1590	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGTTGATGACCAGGCAT	NA	NA	NA	NA	NA	NA	NA	NA	106113882	106112715	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_106112750_106113638
ENSMUST00000123167.2	chr5	-	445	2	NNC	ENSMUSG00000028958.16	novel	1232	2	NA	NA	63	-1076	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTGGCTCCTTAAAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	24652789	24651550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_24651951_24652744
ENSMUST00000123179.2	chr4	-	764	4	FSM	ENSMUSG00000066107.7	ENSMUST00000123179.2	764	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGCCACTGACACAG	NA	NA	NA	NA	NA	NA	NA	NA	92079986	92078980	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_92079129_92079203_92079561_92079633_92079728_92079821
ENSMUST00000123183.8	chr5	+	445	5	ISM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	70	5291	70	-5291	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATGGAGGTGAATACAAT	NA	NA	NA	NA	NA	NA	NA	NA	108048437	108051580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531
ENSMUST00000123287.2	chr14	-	666	5	ISM	ENSMUSG00000034235.18	ENST00000680396.1	5700	21	21846	28251	21846	-28251	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATCTCCCTGTGTAGGTA	NA	NA	NA	NA	NA	NA	NA	NA	20636128	20627247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20627381_20627522_20627655_20631524_20631696_20633389_20633559_20636067
ENSMUST00000123308.2	chrX	+	596	4	ISM	ENSMUSG00000045103.20	ENSMUST00000239019.2	4179	13	129617	2211	129523	-133	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGTTGTTTAAAAATTTA	NA	NA	NA	NA	NA	NA	NA	NA	84221541	84246443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_84221554_84222304_84222429_84234215_84234309_84246076
ENSMUST00000123476.8	chr4	+	1224	10	FSM	ENSMUSG00000028347.15	ENSMUST00000123476.8	1224	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCGGACTTTTATATGCG	NA	NA	NA	NA	NA	NA	NA	NA	48585364	48662085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_48585642_48604580_48604691_48610412_48610543_48614956_48614984_48617234_48617332_48636839_48636989_48638979_48639046_48650294_48650419_48658773_48658933_48662000
ENSMUST00000123488.8	chr4	-	375	4	NNC	ENSMUSG00000050608.12	novel	2549	4	NA	NA	19870	-2009	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAGGTCTTAAATAAATTA	NA	NA	NA	NA	NA	NA	NA	NA	138838554	138831133	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_138831324_138832300_138832411_138833166_138833215_138838527
ENSMUST00000123544.2	chr11	-	1291	2	FSM	ENSMUSG00000042549.11	ENSMUST00000123544.2	1291	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTATGGGTATAAAATTC	NA	NA	NA	NA	NA	NA	NA	NA	60822693	60811742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_60812732_60822391
ENSMUST00000123545.8	chr7	-	1359	7	ISM	ENSMUSG00000030590.16	ENSMUST00000164589.9	1293	8	31	2	-20	0	intron_retention	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	28855628	28851936	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309
ENSMUST00000123594.8	chr19	-	1728	7	FSM	ENSMUSG00000024767.12	ENSMUST00000123594.8	1728	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCTCTGCTGTCTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	7183599	7175574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183461
ENSMUST00000123599.8	chr13	-	659	7	NNC	ENSMUSG00000021460.18	novel	1320	10	NA	NA	83	-5750	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCACCTGTGTGTGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	53083494	52994904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr13_-_52995101_53041276_53041334_53043138_53043232_53052685_53052773_53073036_53073125_53073234_53073303_53083424
ENSMUST00000123605.9	chr8	-	2039	9	FSM	ENSMUSG00000031730.19	ENSMUST00000123605.9	2039	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAGAATATATTGTTATT	NA	NA	NA	NA	NA	NA	NA	NA	110335255	110320108	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_110320764_110321251_110321412_110321547_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110334983
ENSMUST00000123625.2	chr5	+	668	4	ISM	ENSMUSG00000035851.15	ENSMUST00000038384.8	2960	17	27199	578	27199	-575	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCGCCAAAAAAATGCACAGT	NA	NA	NA	NA	NA	NA	NA	NA	86979621	86983938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_86979696_86979806_86979870_86981366_86981502_86983542
ENSMUST00000123626.8	chr15	-	1100	4	FSM	ENSMUSG00000048175.14	ENSMUST00000123626.8	1100	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGCTGTGTGGTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	98043587	98033594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_98034320_98039164_98039270_98040531_98040696_98043481
ENSMUST00000123680.2	chr9	+	695	2	FSM	ENSMUSG00000010607.9	ENSMUST00000123680.2	695	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTTCTAAGATTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	22068141	22069654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_22068210_22069027
ENSMUST00000123701.9	chr11	-	1259	7	ISM	ENSMUSG00000018565.18	ENSMUST00000108594.8	1454	9	989	4	989	-4	intron_retention	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTCTGGTAATGCTTA	NA	NA	NA	NA	NA	NA	NA	NA	69871089	69859053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824
ENSMUST00000123732.4	chr6	-	805	11	NIC	ENSMUSG00000029994.18	novel	2002	13	NA	NA	103	-4400	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATTGACATGCTGGACAT	NA	NA	NA	NA	NA	NA	NA	NA	86742789	86718889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_86718941_86720099_86720159_86721606_86721703_86725868_86725963_86728044_86728102_86729134_86729215_86730784_86730876_86731900_86731949_86734800_86734896_86737655_86737744_86742743
ENSMUST00000123750.8	chr18	+	1495	5	FSM	ENSMUSG00000034006.18	ENSMUST00000123750.8	2004	5	0	509	0	-421	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTCTTGCCCTTGTATG	NA	NA	NA	NA	NA	NA	NA	NA	80298459	80335431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_80298626_80299996_80300334_80306634_80306769_80326490_80326708_80334790
ENSMUST00000123775.8	chr11	-	660	4	ISM	ENSMUSG00000018593.14	ENSMUST00000213866.2	1366	11	20965	-35	20573	35	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCCCACATAACTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	55290151	55286211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017
ENSMUST00000123818.2	chr2	-	580	6	FSM	ENSMUSG00000072980.4	ENSMUST00000123818.2	1082	6	172	330	172	-330	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTTATTTTAGTACATT	NA	NA	NA	NA	NA	NA	NA	NA	119448778	119440781	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_119440846_119442232_119442337_119443492_119443575_119446012_119446136_119448334_119448402_119448638
ENSMUST00000123832.2	chr6	-	616	2	ISM	ENSMUSG00000038074.17	ENSMUST00000046520.13	2694	4	7325	1517	7325	-559	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATAGTGAAGTGATTTT	NA	NA	NA	NA	NA	NA	NA	NA	54562837	54556105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_54556672_54562787
ENSMUST00000123836.2	chrX	-	875	7	FSM	ENSMUSG00000001134.10	ENSMUST00000123836.2	875	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAGATTCAATTGGTAGC	NA	NA	NA	NA	NA	NA	NA	NA	20828256	20817900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUST00000123925.8	chr7	+	2272	8	NIC	ENSMUSG00000025485.14	novel	3406	10	NA	NA	231	445	intron_retention	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCAAGCCTCACTAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	140437611	140442872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_+_140438486_140438775_140438868_140439351_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
ENSMUST00000123925.8-0	chr7	+	2128	8	ISM	ENSMUSG00000025485.14	ENSMUST00000026558.7	3406	10	1205	452	694	-452	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAGCAATGGGGTGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	140438074	140443191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_140438486_140438775_140438868_140439351_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
ENSMUST00000123952.9	chr4	+	1573	5	FSM	ENSMUSG00000078490.11	ENSMUST00000123952.9	2365	5	0	792	0	-792	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACAATGTGCCCACCAGC	NA	NA	NA	NA	NA	NA	NA	NA	155493714	155505657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_155494028_155500136_155500223_155503076_155503153_155503303_155503448_155504703
ENSMUST00000123954.8	chr1	+	306	3	ISM	ENSMUSG00000052423.16	ENSMUST00000064272.10	1998	8	37	5107	0	-5107	5prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCCAACTGGCAGTGATG	NA	NA	NA	NA	NA	NA	NA	NA	171097934	171099361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_171097985_171098772_171098944_171099276
ENSMUST00000123998.2	chr13	+	1766	3	FSM	ENSMUSG00000087143.10	ENSMUST00000123998.2	2203	3	0	437	0	-437	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGCATTTCAGCTAATGTC	NA	NA	NA	NA	NA	NA	NA	NA	78350492	78384246	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_78350597_78379336_78379533_78382780
ENSMUST00000124043.2	chr3	-	187	2	ISM	ENSMUSG00000027883.16	ENST00000674700.1	1952	13	113	23394	113	-20973	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACCTCAAAACACTCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	108629432	108610291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_108610403_108629356
ENSMUST00000124155.2	chr4	-	1090	2	ISM	ENSMUSG00000036002.13	ENSMUST00000107958.8	3280	9	3105	3422	3105	-3422	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCCAGTGGGCAAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	43037183	43035835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_43036805_43037062
ENSMUST00000124200.8	chrX	+	736	9	FSM	ENSMUSG00000009995.18	ENSMUST00000124200.8	1742	9	258	748	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGCCTGCCCAGTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	73326613	73333006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332710_73332789_73332904
ENSMUST00000124207.8	chr18	-	778	6	NNC	ENSMUSG00000024501.21	novel	5479	14	NA	NA	27308	-5403	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGGCAAGGGTTGGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	43479029	43462755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr18_-_43462927_43465936_43466079_43466945_43467103_43475306_43475428_43478170_43478240_43478911
ENSMUST00000124260.8	chr5	+	1051	8	FSM	ENSMUSG00000041939.15	ENSMUST00000124260.8	1051	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGGCTGTCTGTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	114582363	114591211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_114582425_114582712_114582751_114583448_114583541_114584219_114584368_114588301_114588483_114588766_114588923_114590425_114590530_114590940
ENSMUST00000124303.9	chr14	-	809	2	FSM	ENSMUSG00000021905.15	ENSMUST00000124303.9	809	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCAGGAGTCCCAGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	31807686	31804714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_31805204_31807366
ENSMUST00000124314.3	chr7	-	1073	5	FSM	ENSMUSG00000025499.19	ENSMUST00000124314.3	1073	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTCTCTGGCTGGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	140772853	140770839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_140771381_140771867_140771950_140772043_140772204_140772354_140772534_140772742
ENSMUST00000124329.2	chrX	+	1660	3	FSM	ENSMUSG00000086629.9	ENSMUST00000124329.2	1660	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAGAAGAGTAGTTATTAG	NA	NA	NA	NA	NA	NA	NA	NA	107946991	108018512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_107947960_108015726_108015777_108017870
ENSMUST00000124336.2	chr2	+	921	2	FSM	ENSMUSG00000087377.2	ENSMUST00000124336.2	921	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTATTTTTAAAGATAAT	NA	NA	NA	NA	NA	NA	NA	NA	132095276	132103253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_132095450_132102505
ENSMUST00000124471.2	chr4	+	485	2	FSM	ENSMUSG00000087352.2	ENSMUST00000124471.2	485	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTGCTTCTCTCCTAGC	NA	NA	NA	NA	NA	NA	NA	NA	132259997	132260912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_132260219_132260648
ENSMUST00000124486.2	chr3	-	358	4	ISM	ENSMUSG00000000339.15	ENSMUST00000000348.15	1594	11	12514	277	12514	-277	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGTGTTCACGTACGCTC	NA	NA	NA	NA	NA	NA	NA	NA	116289343	116282888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284
ENSMUST00000124504.8	chr11	-	374	5	ISM	ENSMUSG00000025137.16	ENSMUST00000106188.4	1486	13	6245	255	6245	-255	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTTCAGACCCGGAGATG	NA	NA	NA	NA	NA	NA	NA	NA	120502506	120501497	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453
ENSMUST00000124533.3	chr7	+	1261	10	FSM	ENSMUSG00000030802.15	ENSMUST00000124533.3	1792	10	155	376	155	-376	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTGCAGGGCATTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	127504088	127507404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_127504298_127504393_127504463_127504541_127504653_127504920_127504969_127505044_127505165_127505243_127505343_127505520_127505595_127506390_127506520_127506613_127506704_127507092
ENSMUST00000124549.9	chr14	-	2314	7	FSM	ENSMUSG00000021773.12	ENSMUST00000124549.9	2314	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAATCTCAAAGACCTCG	NA	NA	NA	NA	NA	NA	NA	NA	21899045	21895922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_21897496_21897681_21897816_21897940_21897996_21898069_21898189_21898277_21898384_21898608_21898737_21898846
ENSMUST00000124565.3	chr9	-	711	2	FSM	ENSMUSG00000086158.3	ENSMUST00000124565.3	711	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTGTTTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	72892658	72887003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_72887479_72892422
ENSMUST00000124594.8	chr11	+	861	5	ISM	ENSMUSG00000034793.16	ENSMUST00000078975.8	1573	6	2356	247	2356	-247	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACTCCTCGACCAACCAC	NA	NA	NA	NA	NA	NA	NA	NA	102082850	102084660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_102082968_102083298_102083390_102083574_102083694_102083910_102084053_102084268
ENSMUST00000124641.2	chr5	-	294	1	FSM	ENSMUSG00000072692.8	ENSMUST00000124641.2	294	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTTCAATCAGTCATAAA	NA	NA	NA	NA	NA	NA	NA	NA	115241580	115241286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_115241300_115241600
ENSMUST00000124655.8	chr17	-	829	7	FSM	ENSMUSG00000067148.16	ENSMUST00000124655.8	829	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTACACACATACCTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	46557499	46555026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_46555147_46555231_46555349_46555451_46555602_46555724_46555878_46555956_46556077_46556541_46556675_46557463
ENSMUST00000124659.2	chr11	-	296	2	ISM	ENSMUSG00000001552.15	ENSMUST00000001592.15	3205	14	25320	669	25320	-669	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCCTGGGCTGGGGAT	NA	NA	NA	NA	NA	NA	NA	NA	100263255	100262113	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100262276_100263121
ENSMUST00000124745.8	chr8	+	536	5	FSM	ENSMUSG00000074247.11	ENSMUST00000124745.8	1933	5	12	1385	6	-1385	multi-exon	FALSE	canonical	NA	NA	NA	NA	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCTTGAGTTTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	71921854	71927357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71921970_71924680_71924762_71924838_71924891_71926418_71926481_71927131
ENSMUST00000124838.2	chr10	-	1525	8	FSM	ENSMUSG00000040006.14	ENSMUST00000124838.2	1525	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGAATTGCTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	7656655	7643719	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_7644350_7646120_7646285_7649061_7649196_7649711_7649869_7650981_7651134_7653537_7653635_7655066_7655127_7656524
ENSMUST00000124842.8	chrX	-	1145	7	FSM	ENSMUSG00000085396.8	ENSMUST00000124842.8	1145	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTTCGTAAATTATTGT	NA	NA	NA	NA	NA	NA	NA	NA	49724138	49644620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_49644807_49647107_49647262_49653689_49653845_49704237_49704393_49715313_49715387_49719767_49719873_49723821
ENSMUST00000124888.8	chr13	-	2843	11	FSM	ENSMUSG00000057554.14	ENSMUST00000124888.8	2843	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATACTCTCTGGAATAGT	NA	NA	NA	NA	NA	NA	NA	NA	12479825	12454295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307_12476620_12479776
ENSMUST00000124932.2	chr11	+	404	2	FSM	ENSMUSG00000059278.10	ENST00000333775.9	715	2	317	-6	317	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	NA	NA	NA	NA	NA	NA	NA	69286943	69287506	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69287187_69287345
ENSMUST00000124933.2	chr6	-	673	5	NNC	ENSMUSG00000059430.15	novel	1333	9	NA	NA	1088	-6857	at_least_one_novel_splicesite	TRUE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGAGGTGCTGCCTGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	83503884	83496750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_83496942_83497637_83497800_83499797_83499910_83500149_83500261_83503787
ENSMUST00000124935.8	chr2	+	832	8	ISM	ENSMUSG00000027523.21	ENST00000477931.5	1662	12	-111	1502	-111	-1261	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTGTCCTGACCTCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	174169362	174187034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_174169735_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020
ENSMUST00000124968.8	chr13	+	546	4	FSM	ENSMUSG00000021496.13	ENSMUST00000124968.8	546	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGTTATTTGTCATTA	NA	NA	NA	NA	NA	NA	NA	NA	55875180	55924643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_55875288_55880748_55880881_55923179_55923261_55924417
ENSMUST00000124975.2	chr4	+	282	3	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	41	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTGCTGTTCACATT	NA	NA	NA	NA	NA	NA	NA	NA	146206941	146215004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_+_146207052_146209452_146209546_146214925
ENSMUST00000124992.8	chr4	+	2368	8	FSM	ENSMUSG00000028277.14	ENSMUST00000124992.8	3530	8	0	1162	0	-1162	multi-exon	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGGGAGGGGAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	33031415	33051201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_33031617_33036708_33036783_33038198_33038331_33040732_33040818_33041355_33041462_33043856_33043987_33045079_33045200_33049681
ENSMUST00000124996.8	chr13	+	474	2	FSM	ENSMUSG00000071451.11	ENSMUST00000124996.8	474	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGCTTCATTTTACTTT	NA	NA	NA	NA	NA	NA	NA	NA	34346946	34362151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_34347233_34361963
ENSMUST00000125040.8	chr16	-	2200	5	NNC	ENSMUSG00000071533.12	novel	2295	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	1280	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	55850059	55835868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55849965
ENSMUST00000125098.2	chr2	+	655	6	ISM	ENSMUSG00000027411.18	ENST00000380469.7	2161	20	17282	263	17243	-263	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTTAGATGAAGGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	130283527	130285319	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215
ENSMUST00000125107.8	chr4	+	1551	7	FSM	ENSMUSG00000028608.16	ENSMUST00000125107.8	1551	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGTGTGTATTTATGT	NA	NA	NA	NA	NA	NA	NA	NA	107747095	107754999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
ENSMUST00000125107.8-0	chr4	+	2913	7	FSM	ENSMUSG00000028608.16	ENSMUST00000125107.8	1551	7	220	-1582	220	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACCTAGTGATGAAAAACA	NA	NA	NA	NA	NA	NA	NA	NA	107747315	107756581	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
ENSMUST00000125127.8	chr18	+	1683	4	FSM	ENSMUSG00000024571.16	ENSMUST00000125127.8	1683	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACACGTTTGTTGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	80250012	80255947	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_80250117_80250368_80250559_80253276_80253346_80254627
ENSMUST00000125164.2	chr9	-	739	5	NNC	ENSMUSG00000032096.17	novel	4072	10	NA	NA	7740	-12364	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCCCTTAATCCCAGAC	NA	NA	NA	NA	NA	NA	NA	NA	44671389	44667323	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_-_44667381_44668416_44668582_44669857_44670064_44670177_44670358_44671258
ENSMUST00000125184.8	chr8	-	711	4	FSM	ENSMUSG00000090137.9	ENSMUST00000125184.8	711	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTAGAGTGACTGT	NA	NA	NA	NA	NA	NA	NA	NA	70963231	70960912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70962987
ENSMUST00000125251.8	chr11	+	1146	3	FSM	ENSMUSG00000045775.16	ENST00000329783.9	1158	3	-41	53	-41	-53	multi-exon	FALSE	canonical	NA	NA	NA	NA	2787	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTCTTCACCATCCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	115353389	115360919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_115353634_115355739_115355884_115360161
ENSMUST00000125257.3	chr8	-	2079	10	FSM	ENSMUSG00000031667.17	ENSMUST00000125257.3	2079	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGCTGTTAAATAATTTT	NA	NA	NA	NA	NA	NA	NA	NA	91860655	91850196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91860527
ENSMUST00000125300.3	chr14	-	473	4	NNC	ENSMUSG00000022090.11	novel	920	4	NA	NA	-134	-51	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGCACTCTCAGACTCT	NA	NA	NA	NA	NA	NA	NA	NA	70405422	70402046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr14_-_70402243_70403538_70403657_70405109_70405235_70405388
ENSMUST00000125302.2	chr11	-	549	6	NNC	ENSMUSG00000020321.17	novel	1958	9	NA	NA	-174	-5553	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCTTGGACCACAACCGAG	NA	NA	NA	NA	NA	NA	NA	NA	21522367	21512895	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729_21521763_21522315
ENSMUST00000125303.8	chr4	-	704	6	NIC	ENSMUSG00000028441.13	novel	1114	7	NA	NA	-3842	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTGCTGTGTCCTTACT	NA	NA	NA	NA	NA	NA	NA	NA	41511467	41505008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_41505169_41505567_41505655_41507093_41507329_41507520_41507594_41508516_41508630_41511431
ENSMUST00000125304.8	chr1	-	3378	8	FSM	ENSMUSG00000001143.14	ENSMUST00000125304.8	3378	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTCTTGTCAGAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	36484352	36461145	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
ENSMUST00000125366.8	chr2	+	2016	12	FSM	ENSMUSG00000019188.17	ENSMUST00000125366.8	5204	12	27	3161	0	473	multi-exon	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCGTCCACCTGCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	152511407	152547429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152546541
ENSMUST00000125369.8	chr4	+	1719	5	FSM	ENSMUSG00000059810.19	ENSMUST00000125369.8	1719	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTGTGTATTCCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	62617702	62621255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_62618132_62618234_62618337_62618590_62618653_62619270_62619438_62620296
ENSMUST00000125392.8	chr4	+	606	3	ISM	ENSMUSG00000028919.12	ENST00000270747.8	2557	15	28	9865	24	-9865	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGGCCTTCTGGAGACTGG	NA	NA	NA	NA	NA	NA	NA	NA	140970203	140974312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_140970322_140973485_140973921_140974259
ENSMUST00000125408.8	chr2	+	596	5	ISM	ENSMUSG00000014873.16	ENSMUST00000015017.8	1203	6	446	362	446	-362	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGCCTTTGGATGTCC	NA	NA	NA	NA	NA	NA	NA	NA	26806824	26809833	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809738
ENSMUST00000125506.2	chr10	-	995	2	ISM	ENSMUSG00000034620.18	ENSMUST00000140299.3	4793	6	8348	2726	8348	-2726	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACTCCTCTTGCATATAA	NA	NA	NA	NA	NA	NA	NA	NA	121924928	121916744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_121917595_121924783
ENSMUST00000125522.2	chr5	+	294	2	ISM	ENSMUSG00000029364.16	ENSMUST00000031309.16	2421	9	1	14886	1	-14092	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCGTGGTCAAGCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	117495369	117501780	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_117495539_117501655
ENSMUST00000125528.2	chr11	-	906	2	ISM	ENSMUSG00000017405.15	ENSMUST00000017549.13	2809	15	9288	4	9288	-4	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCTTGGCTTATGATC	NA	NA	NA	NA	NA	NA	NA	NA	78058213	78056935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_78057604_78057975
ENSMUST00000125554.8	chr6	-	1100	5	NNC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	22	-158	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACTCTTAGTTTCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	72339343	72336854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_72337626_72337857_72337933_72338099_72338210_72338294_72338354_72339258
ENSMUST00000125579.2	chr6	-	648	3	ISM	ENSMUSG00000000627.16	ENST00000339773.9	2162	10	22236	384	22236	-384	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGCTATAGCCAAGACCC	NA	NA	NA	NA	NA	NA	NA	NA	82894463	82890657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_82891086_82891347_82891407_82894302
ENSMUST00000125616.2	chr11	+	579	3	ISM	ENSMUSG00000001555.11	ENSMUST00000107400.3	1467	8	7272	0	7272	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGGCTGGGGGGCAGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	100313863	100314938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_100314054_100314261_100314426_100314713
ENSMUST00000125714.2	chr2	+	712	3	ISM	ENSMUSG00000027397.15	ENSMUST00000110315.2	3219	10	7010	3351	7010	-3351	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGAAATGGAGACGCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	129048239	129050178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_129048407_129049529_129049797_129049900
ENSMUST00000125716.8	chr8	+	3462	8	FSM	ENSMUSG00000031748.17	ENSMUST00000125716.8	3462	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAGAACAAAAAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	94537467	94695584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_94538082_94538278_94538322_94622858_94623001_94670825_94670987_94676031_94676161_94676929_94677060_94690011_94690166_94693495
ENSMUST00000125741.8	chr8	+	599	4	ISM	ENSMUSG00000019428.17	ENST00000608443.6	1530	9	3369	991	3278	-991	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGCTGGAACCTTCCAAC	NA	NA	NA	NA	NA	NA	NA	NA	70983773	70986821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70983924_70984171_70984393_70985226_70985400_70986766
ENSMUST00000125780.2	chr4	+	474	5	ISM	ENSMUSG00000009863.15	ENSMUST00000010007.9	1142	8	200	5487	200	-5487	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTGAAGAAGAAGGATGAG	NA	NA	NA	NA	NA	NA	NA	NA	140688713	140701017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974
ENSMUST00000125806.8	chr11	-	607	4	ISM	ENSMUSG00000057594.13	ENSMUST00000076921.7	911	5	266	160	266	97	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGAGCCTGAGGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	120358160	120356423	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120356648_120356809_120356926_120357479_120357594_120358007
ENSMUST00000125806.8-0	chr11	-	625	4	ISM	ENSMUSG00000057594.13	ENSMUST00000076921.7	911	5	326	82	326	-82	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAGCATACACTTACAAA	NA	NA	NA	NA	NA	NA	NA	NA	120358100	120356345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120356648_120356809_120356926_120357479_120357594_120358007
ENSMUST00000125897.2	chr16	-	2338	9	NNC	ENSMUSG00000022893.15	novel	4884	9	NA	NA	1632	-1649	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGAGAGCTGTGATCC	NA	NA	NA	NA	NA	NA	NA	NA	85598369	85592363	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr16_-_85592989_85593526_85593703_85594605_85594782_85594891_85595079_85595297_85595585_85595933_85596102_85596423_85596557_85596977_85597325_85598130
ENSMUST00000125975.8	chr8	+	2408	17	FSM	ENSMUSG00000000738.19	ENSMUST00000125975.8	2408	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCCATGTGTATTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	123789726	123824499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_123789774_123793211_123793315_123797118_123797205_123800487_123800730_123803589_123803730_123804556_123804660_123806152_123806279_123806707_123806871_123807375_123807550_123814066_123814192_123815683_123815787_123816862_123816974_123818373_123818490_123820329_123820487_123821212_123821380_123821896_123821975_123824132
ENSMUST00000126002.2	chr2	+	1190	4	FSM	ENSMUSG00000084781.2	ENSMUST00000126002.2	1190	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTTGTGAAGGGGGAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	92239236	92262653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_92239757_92248071_92248277_92253157_92253372_92262402
ENSMUST00000126036.2	chr5	+	455	4	ISM	ENSMUSG00000029199.12	ENSMUST00000122026.6	1668	11	67	13762	24	-13369	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGGCAACCTGGTCTCTA	NA	NA	NA	NA	NA	NA	NA	NA	65548906	65552788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707
ENSMUST00000126071.9	chr13	+	4322	11	FSM	ENSMUSG00000025873.17	ENSMUST00000126071.9	4322	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACCAGCTGTGGGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	54769596	54811876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
ENSMUST00000126151.8	chr6	-	1522	10	FSM	ENSMUSG00000004631.16	ENSMUST00000126151.8	1522	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATGTGTGGTAAAATTTC	NA	NA	NA	NA	NA	NA	NA	NA	4747157	4674353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_4674633_4678066_4678111_4689578_4689768_4690468_4690496_4691428_4691641_4694021_4694185_4707073_4707273_4711307_4711381_4717920_4718079_4746979
ENSMUST00000126166.8	chr14	-	2369	12	FSM	ENSMUSG00000022185.20	ENSMUST00000126166.8	2369	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	NA	NA	NA	NA	NA	NA	NA	NA	54891073	54879617	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890991
ENSMUST00000126195.2	chr11	-	786	6	NNC	ENSMUSG00000035086.14	novel	4365	12	NA	NA	5942	-2965	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAAAACGCAGCTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	101187133	101182208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_101182359_101184826_101185055_101185860_101185991_101186120_101186258_101186359_101186451_101187083
ENSMUST00000126270.2	chr4	-	656	6	FSM	ENSMUSG00000085931.2	ENSMUST00000126270.2	656	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACGTTCAAATTTATCAGA	NA	NA	NA	NA	NA	NA	NA	NA	94313825	93977812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_93977981_93978813_93978868_94034676_94034806_94043188_94043282_94140779_94140875_94313708
ENSMUST00000126386.8	chr11	-	1030	7	ISM	ENSMUSG00000019303.15	ENSMUST00000019447.15	1291	8	36	309	36	-309	intron_retention	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCCAGATATCAAACCTGG	NA	NA	NA	NA	NA	NA	NA	NA	100986226	100982957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983
ENSMUST00000126388.8	chr11	+	1938	7	FSM	ENSMUSG00000040938.17	ENSMUST00000126388.8	1938	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCTTGAGAGTTCCATTA	NA	NA	NA	NA	NA	NA	NA	NA	70103577	70107239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_70103610_70104504_70104704_70104919_70105091_70105191_70105539_70105780_70105925_70106109_70106878_70106962
ENSMUST00000126435.8	chr8	-	2819	5	FSM	ENSMUSG00000004996.10	ENSMUST00000126435.8	2819	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTTTTACAATACACAAA	NA	NA	NA	NA	NA	NA	NA	NA	84983953	84976534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_84978341_84980491_84980717_84980804_84980982_84982872_84983049_84983518
ENSMUST00000126458.2	chr4	+	788	6	ISM	ENSMUSG00000028729.16	ENST00000431635.6	1012	9	489	67	427	-67	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGCTTCCGAGCCAAGG	NA	NA	NA	NA	NA	NA	NA	NA	118478422	118482815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719
ENSMUST00000126483.8	chr11	-	616	5	ISM	ENSMUSG00000018160.16	ENST00000394287.7	2815	18	29332	854	28998	-854	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTCACCCTGCCTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	98054783	98043836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_98043952_98049154_98049296_98051762_98051869_98051969_98052066_98054625
ENSMUST00000126523.9	chr18	+	807	9	FSM	ENSMUSG00000024410.16	ENSMUST00000126523.9	1282	9	35	440	35	-440	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATGCACATACTGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	12301808	12313737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722
ENSMUST00000126610.2	chr2	+	1242	7	FSM	ENSMUSG00000038900.18	ENSMUST00000126610.2	1242	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1825	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAATTGTTGGGGCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	32851570	32854508	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
ENSMUST00000126615.8	chr4	-	716	5	ISM	ENSMUSG00000055401.15	ENSMUST00000030858.14	1346	6	2246	331	2241	-330	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCAGTTCTGGAAAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	148234124	148230574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835
ENSMUST00000126622.8	chr13	+	1446	3	FSM	ENSMUSG00000048603.9	ENSMUST00000126622.8	1446	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCTCAATTAAGACAATGC	NA	NA	NA	NA	NA	NA	NA	NA	98453576	98458543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_98454118_98455581_98455654_98457710
ENSMUST00000126633.2	chr9	+	494	3	ISM	ENSMUSG00000006932.18	ENST00000441708.2	2475	15	4913	4051	4913	-3939	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTTGCCCAGCAAATCAT	NA	NA	NA	NA	NA	NA	NA	NA	120784190	120784907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_120784318_120784394_120784734_120784879
ENSMUST00000126691.2	chr3	+	834	3	ISM	ENSMUSG00000042747.13	ENSMUST00000040888.12	1172	5	0	2713	0	-2516	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCCTGTGCTTAGATGA	NA	NA	NA	NA	NA	NA	NA	NA	89153272	89154500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89153823_89154084_89154240_89154371
ENSMUST00000126764.2	chr2	+	961	4	FSM	ENSMUSG00000027245.12	ENSMUST00000126764.2	961	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	882	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTTCCCCTTGGATCTG	NA	NA	NA	NA	NA	NA	NA	NA	121287443	121289153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_121287773_121288126_121288183_121288472_121288525_121288629
ENSMUST00000126778.8	chr16	+	491	4	FSM	ENSMUSG00000075704.18	ENSMUST00000126778.8	491	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCTCCCTGACTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	18247446	18256560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_18247506_18248560_18248627_18255310_18255368_18256251
ENSMUST00000126781.2	chr19	-	2095	9	FSM	ENSMUSG00000039652.17	ENSMUST00000126781.2	2095	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGGTGAGGTCTATTTA	NA	NA	NA	NA	NA	NA	NA	NA	37184907	37031461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_37031775_37045572_37045692_37064937_37065028_37065819_37065988_37083190_37083215_37103731_37103789_37116530_37116622_37151366_37152386_37184693
ENSMUST00000126837.2	chr2	-	365	4	ISM	ENSMUSG00000057182.16	ENST00000409101.7	6601	28	37918	64640	37917	-64640	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGCTTGCAGTGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	65359748	65355091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_65355221_65356220_65356313_65356840_65356970_65359733
ENSMUST00000126873.2	chr7	-	451	3	ISM	ENSMUSG00000035458.16	ENSMUST00000098859.10	912	8	1961	3	1961	-3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGAACTGTGTGTCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	4523566	4521306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_4521451_4522396_4522574_4523436
ENSMUST00000126926.2	chr3	+	422	2	FSM	ENSMUSG00000074466.13	ENSMUST00000126926.2	925	2	0	503	0	-503	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCCAGCCTGCCTACTTT	NA	NA	NA	NA	NA	NA	NA	NA	89301596	89305583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89301701_89305265
ENSMUST00000126933.8	chr9	-	1819	5	ISM	ENSMUSG00000000168.11	ENST00000393051.5	2268	12	15431	-609	15431	-556	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGGGAACAGACTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	50555362	50546488	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325
ENSMUST00000126949.8	chr11	-	851	4	FSM	ENSMUSG00000038615.18	ENSMUST00000169828.8	3530	4	0	2679	0	-926	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCAGCTCGAAGAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	96714953	96710918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714901
ENSMUST00000126957.9	chr13	+	1731	11	FSM	ENSMUSG00000025451.16	ENSMUST00000126957.9	1731	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCGATTTTGAAATAAATGAA	NA	NA	NA	NA	NA	NA	NA	NA	119565668	119593893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_119565949_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
ENSMUST00000126980.8	chr10	-	2449	9	FSM	ENSMUSG00000003344.15	ENSMUST00000126980.8	2449	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTATGTTGTCTGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	80492328	80478450	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_80479526_80479659_80479807_80480095_80480184_80480436_80480630_80481173_80481372_80482214_80482321_80483538_80483696_80484393_80484514_80491963
ENSMUST00000127027.2	chr17	+	2114	4	FSM	ENSMUSG00000096696.2	ENSMUST00000127027.2	2667	4	0	553	0	-553	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCGTATGAATGTAATCA	NA	NA	NA	NA	NA	NA	NA	NA	17284374	17309337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505
ENSMUST00000127090.8	chr11	+	1525	12	ISM	ENSMUSG00000020823.17	ENSMUST00000103026.10	2589	17	65	6851	65	-6851	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCCGATTTCCTGAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	117006128	117041534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429
ENSMUST00000127113.2	chr14	-	2643	2	ISM	ENSMUSG00000022124.16	ENSMUST00000145693.8	3352	5	9532	0	9508	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTTGTATTTTTATAAC	NA	NA	NA	NA	NA	NA	NA	NA	103326903	103318469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_103320947_103326737
ENSMUST00000127137.3	chr13	-	991	3	FSM	ENSMUSG00000069171.15	ENSMUST00000127137.3	991	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGACCAAGGACTAAAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	78346049	78337790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_78338133_78343280_78343809_78345928
ENSMUST00000127156.2	chr5	-	785	7	ISM	ENSMUSG00000039886.9	ENST00000417509.5	1352	10	1730	708	1730	-708	internal_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGAGTCAGTTGGCCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	135771253	135765108	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_135765201_135765294_135765357_135765450_135765690_135765771_135765868_135766043_135766104_135770819_135770937_135771134
ENSMUST00000127165.2	chr11	+	324	4	ISM	ENSMUSG00000003581.15	ENSMUST00000003677.11	1874	9	300	4415	300	-4415	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCTCCAATGTCACCAAG	NA	NA	NA	NA	NA	NA	NA	NA	4085501	4086757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_4085564_4085813_4085958_4086559_4086632_4086711
ENSMUST00000127168.8	chr2	-	1257	4	ISM	ENSMUSG00000009207.16	ENSMUST00000064503.13	3195	13	46966	1056	46241	650	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTGTGTGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	74362326	74351733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219
ENSMUST00000127170.2	chr1	-	723	4	ISM	ENSMUSG00000026088.16	ENSMUST00000027257.10	1231	7	8543	100	8539	-100	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGCAAAGCAAATATTGGG	NA	NA	NA	NA	NA	NA	NA	NA	37920949	37918068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_37918445_37918640_37918702_37920013_37920130_37920779
ENSMUST00000127192.2	chr9	+	683	5	ISM	ENSMUSG00000074183.4	ENSMUST00000098537.4	875	7	4347	89	4347	-89	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGATACTGGCCTCTAAT	NA	NA	NA	NA	NA	NA	NA	NA	78142284	78149877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_78142418_78143211_78143345_78146766_78146909_78148808_78148941_78149734
ENSMUST00000127234.8	chr18	+	530	4	FSM	ENSMUSG00000024571.16	ENSMUST00000127234.8	1755	4	0	1225	0	-1207	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGACCTGATGAACATGCA	NA	NA	NA	NA	NA	NA	NA	NA	80250109	80254731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_80250277_80250368_80250559_80253276_80253346_80254627
ENSMUST00000127243.8	chr2	-	1162	6	FSM	ENSMUSG00000005233.17	ENSMUST00000167875.9	1194	6	33	-1	-22	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	69036501	69024238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69036407
ENSMUST00000127292.2	chr15	+	783	3	FSM	ENSMUSG00000022427.5	ENSMUST00000127292.2	783	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGAGTACAGAAGTCACCA	NA	NA	NA	NA	NA	NA	NA	NA	79555291	79556881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_79555493_79556097_79556216_79556417
ENSMUST00000127348.8	chr3	+	2286	13	FSM	ENSMUSG00000028085.13	ENSMUST00000127348.8	3469	13	13	1170	5	-1170	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTAACTTCCACGTAA	NA	NA	NA	NA	NA	NA	NA	NA	85481438	85561759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85559587_85559723_85561030
ENSMUST00000127405.2	chr11	+	660	4	FSM	ENSMUSG00000001056.4	ENSMUST00000127405.2	1042	4	0	382	0	-382	multi-exon	FALSE	canonical	NA	NA	NA	NA	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTGTTGGAGGTGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	51510561	51514159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_51510805_51510908_51510979_51513311_51513418_51513918
ENSMUST00000127443.2	chr8	-	718	3	NNC	ENSMUSG00000002393.15	novel	2218	4	NA	NA	1051	-1625	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGAGCCGCCCCGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	71833553	71828395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_-_71828918_71831032_71831172_71833496
ENSMUST00000127450.2	chr11	-	1174	3	FSM	ENSMUSG00000085081.2	ENSMUST00000127450.2	1174	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGTCCAACATGAATTAAG	NA	NA	NA	NA	NA	NA	NA	NA	119725191	119711637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_119712591_119716652_119716798_119725115
ENSMUST00000127477.8	chr3	+	1079	6	FSM	ENSMUSG00000027673.13	ENSMUST00000127477.8	1079	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTTGCTTTACTTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	32791138	32805715	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
ENSMUST00000127484.2	chr16	-	496	1	FSM	ENSMUSG00000099764.2	ENSMUST00000127484.2	496	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTGGAGTTTATGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	20641390	20640894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_20640900_20641400
ENSMUST00000127550.2	chr15	-	575	2	NNC	ENSMUSG00000055762.17	novel	2152	10	NA	NA	3907	-7764	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCGAGCGGGCTTTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	75777212	75775110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_-_75775658_75777184
ENSMUST00000127559.2	chr2	+	2080	3	FSM	ENSMUSG00000085028.3	ENSMUST00000127559.2	2976	3	161	735	0	-348	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGCCACAGACAGAGATT	NA	NA	NA	NA	NA	NA	NA	NA	181026203	181028644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_181026788_181027073_181028103_181028177
ENSMUST00000127628.6	chr5	-	839	7	ISM	ENSMUSG00000033434.16	ENSMUST00000077220.14	1617	10	1485	156	1485	-156	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGCCAGAGGGTGATGCG	NA	NA	NA	NA	NA	NA	NA	NA	110254578	110251996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518
ENSMUST00000127647.3	chr17	+	1002	5	FSM	ENSMUSG00000024181.10	ENSMUST00000127647.3	1002	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	26342517	26345587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344473_26344539_26345244
ENSMUST00000127660.2	chr6	+	234	3	ISM	ENSMUSG00000052738.15	ENSMUST00000064740.9	1519	9	286	16393	286	-16393	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGGAGGAACCACTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	73225650	73237501	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_73225737_73233153_73233258_73237457
ENSMUST00000127743.8	chr6	-	1051	4	ISM	ENSMUSG00000068250.14	ENSMUST00000111535.8	1457	7	17683	0	17596	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTGGGGGGGCGGCT	NA	NA	NA	NA	NA	NA	NA	NA	149072527	149058644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330
ENSMUST00000127861.8	chr1	-	863	5	ISM	ENSMUSG00000025980.15	ENST00000452200.6	2388	12	-44	5232	-44	-5232	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTATGGGATTTGATAC	NA	NA	NA	NA	NA	NA	NA	NA	55127402	55122225	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
ENSMUST00000127896.8	chr9	+	575	5	FSM	ENSMUSG00000036781.14	ENSMUST00000127896.8	575	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTCCTCCCTCTGCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	66853372	66856796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66855920_66856000_66856610
ENSMUST00000127968.2	chr19	+	692	4	ISM	ENSMUSG00000025001.12	ENSMUST00000025965.12	5868	22	12774	20752	12774	-20752	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGTACTCCCTTGCAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	38932132	38938743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_38932386_38933834_38934018_38935168_38935313_38938631
ENSMUST00000127988.8	chr2	-	2447	8	FSM	ENSMUSG00000038671.16	ENSMUST00000127988.8	2447	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAGTTAGCCAGTCACA	NA	NA	NA	NA	NA	NA	NA	NA	181007197	180999625	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
ENSMUST00000127994.8	chr16	-	945	7	ISM	ENSMUSG00000022757.20	ENST00000675543.1	1709	8	7136	544	7136	-544	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGCAAGTACCATGACCC	NA	NA	NA	NA	NA	NA	NA	NA	56526057	56511239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_56511517_56512238_56512280_56514762_56514853_56517821_56517960_56521431_56521600_56524789_56524937_56525973
ENSMUST00000127994.8-0	chr16	-	1404	7	ISM	ENSMUSG00000022757.20	ENST00000675543.1	1709	8	7136	85	7136	-85	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAAAAATAGAGCCCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	56526057	56510780	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_56511517_56512238_56512280_56514762_56514853_56517821_56517960_56521431_56521600_56524789_56524937_56525973
ENSMUST00000128005.2	chr3	+	1830	8	NNC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	2253	-1314	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGAGTTTGCAGTCAAGG	NA	NA	NA	NA	NA	NA	NA	NA	105868937	105875762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_+_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873173_105873672_105873742_105874478
ENSMUST00000128035.2	chr8	-	1068	9	NNC	ENSMUSG00000003813.16	novel	1842	9	NA	NA	0	-709	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATGAGAATTTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	85567294	85562248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_-_85562304_85562448_85562549_85564088_85564223_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
ENSMUST00000128057.8	chr7	+	2231	4	FSM	ENSMUSG00000031072.15	ENSMUST00000128057.8	2231	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCTGACATTGTAAAACAA	NA	NA	NA	NA	NA	NA	NA	NA	144468836	144484485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_144469067_144470164_144470271_144471346_144471418_144482661
ENSMUST00000128172.3	chr2	-	1403	2	ISM	ENSMUSG00000007659.19	ENST00000422920.2	2187	3	171	47946	171	-1065	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGAACCACGCCCCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	152673032	152671346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_152672023_152672305
ENSMUST00000128187.8	chr5	-	2752	8	FSM	ENSMUSG00000029328.16	ENSMUST00000128187.8	2752	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	NA	NA	NA	NA	NA	NA	NA	100187081	100181435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUST00000128201.2	chr8	+	870	7	ISM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	1590	15400	83	2005	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTCAGGTAAGAGGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	106939157	106964026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853
ENSMUST00000128246.8	chr5	+	440	3	FSM	ENSMUSG00000034842.17	ENST00000349321.7	887	3	3	444	3	-444	multi-exon	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTTCTACCACACATTCA	NA	NA	NA	NA	NA	NA	NA	NA	92534745	92540584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_92534851_92535992_92536071_92540327
ENSMUST00000128353.8	chr12	-	2577	3	FSM	ENSMUSG00000037904.15	ENSMUST00000128353.8	2577	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTTCGTCTTGACTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	110945474	110941786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_110943983_110944381_110944562_110945273
ENSMUST00000128374.2	chr6	-	401	2	ISM	ENSMUSG00000030045.11	ENSMUST00000032124.9	5000	5	3492	4062	3492	-4062	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACATGCCTGTTGGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	81939447	81938893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_81939144_81939296
ENSMUST00000128408.8	chr1	-	396	4	NNC	ENSMUSG00000026385.17	novel	569	4	NA	NA	-32	31	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGGCCAGCGTTAACCTCT	NA	NA	NA	NA	NA	NA	NA	NA	120047900	120041098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_-_120041264_120044115_120044179_120047624_120047743_120047850
ENSMUST00000128420.9	chr7	+	2342	13	ISM	ENSMUSG00000006599.14	ENST00000534641.5	2524	14	5568	-3	5016	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTCTCTTGGAGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	46451110	46473224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_46451265_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
ENSMUST00000128482.8	chr7	-	250	3	NNC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	60	-5721	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGACATCTTGCTTCTCA	NA	NA	NA	NA	NA	NA	NA	NA	117715351	117714007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_117714088_117714331_117714470_117715319
ENSMUST00000128518.2	chr4	+	297	1	FSM	ENSMUSG00000078238.5	ENSMUST00000128518.2	297	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	929	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTCAGTTCCCATCCAA	NA	NA	NA	NA	NA	NA	NA	NA	115924464	115924761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_115924500_115924800
ENSMUST00000128616.6	chr6	+	2819	4	FSM	ENSMUSG00000029815.13	ENSMUST00000128616.6	2819	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	505	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAATTTTGCTTTTAACT	NA	NA	NA	NA	NA	NA	NA	NA	49050728	49063685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_49051038_49052019_49052199_49059778_49059861_49061436
ENSMUST00000128643.2	chr11	-	728	2	ISM	ENSMUSG00000039055.5	ENST00000393271.6	2138	8	246	4899	246	-4899	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGAGGGATGCGGAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	94541532	94540720	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_94540965_94541048
ENSMUST00000128688.2	chr2	-	513	3	ISM	ENSMUSG00000063972.14	ENSMUST00000168098.8	5877	9	41558	15634	41558	-11403	internal_fragment	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCTACGTGGCAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	38632969	38629019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_38629154_38630391_38630620_38632818
ENSMUST00000128699.2	chr10	-	397	2	ISM	ENSMUSG00000019782.11	ENSMUST00000019917.6	1090	7	18379	6	18249	-6	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATAAAGTGTTTACTTC	NA	NA	NA	NA	NA	NA	NA	NA	33877241	33872556	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_33872845_33877132
ENSMUST00000128727.8	chr5	+	2031	11	FSM	ENSMUSG00000056367.15	ENSMUST00000128727.8	2031	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTTCCTTGTGGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	25964994	26055686	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_25965127_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
ENSMUST00000128747.2	chr14	-	779	2	ISM	ENSMUSG00000034194.19	ENSMUST00000121142.4	1958	7	1628	6772	1628	-6772	internal_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGACACATCCGCCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	69943314	69941528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_69941576_69942582
ENSMUST00000128764.9	chr14	+	1009	4	FSM	ENSMUSG00000021963.18	ENSMUST00000128764.9	5125	4	84	4032	46	271	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGACCAGGCTGGCCTCG	NA	NA	NA	NA	NA	NA	NA	NA	58035720	58040063	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_58035812_58035944_58036055_58038950_58039074_58039378
ENSMUST00000128787.8	chr19	-	1436	10	FSM	ENSMUSG00000037916.15	ENSMUST00000128787.8	1436	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTTCTCATCCCTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	4062673	4057561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062577
ENSMUST00000128788.8	chr11	+	1141	6	FSM	ENSMUSG00000001105.16	ENSMUST00000128788.8	1141	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTGTGTGCATTATTT	NA	NA	NA	NA	NA	NA	NA	NA	78427186	78432563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720_78431825_78432186
ENSMUST00000128800.2	chr4	-	469	3	FSM	ENSMUSG00000085213.2	ENSMUST00000128800.2	469	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAATTCAAGGTCATTCT	NA	NA	NA	NA	NA	NA	NA	NA	150653001	150651325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_150651550_150652673_150652787_150652869
ENSMUST00000128813.2	chr7	+	1277	4	ISM	ENSMUSG00000035064.18	ENSMUST00000106488.3	2537	18	40796	-689	40796	184	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTCCATGGCCGTTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	120491207	120503408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_120491277_120494406_120494532_120498590_120498770_120502504
ENSMUST00000128940.2	chr11	+	1781	2	FSM	ENSMUSG00000020397.16	ENSMUST00000170928.8	2390	2	44	565	31	-565	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCATTCTCTATCCTCTA	NA	NA	NA	NA	NA	NA	NA	NA	46327831	46332983	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_46328019_46331389
ENSMUST00000128960.2	chr11	+	1149	2	FSM	ENSMUSG00000085208.4	ENSMUST00000128960.2	4423	2	13	3261	0	-3261	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATAAGGAAAGATATGATG	NA	NA	NA	NA	NA	NA	NA	NA	86092208	86098757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_86092379_86097778
ENSMUST00000128961.2	chr7	+	774	6	ISM	ENSMUSG00000015149.15	ENSMUST00000170068.9	1585	13	18741	401	18303	185	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACCACCATAGCCTCTAA	NA	NA	NA	NA	NA	NA	NA	NA	28484981	28487685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
ENSMUST00000128972.9	chr8	-	1141	7	FSM	ENSMUSG00000052926.17	ENSMUST00000128972.9	1141	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	85692693	85684295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
ENSMUST00000128996.2	chr11	+	2034	2	FSM	ENSMUSG00000085665.2	ENSMUST00000128996.2	3105	2	0	1071	0	-1071	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTCAGTCTGATTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	23017997	23024503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_23018407_23022878
ENSMUST00000129005.2	chr12	-	325	2	ISM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	3109	1681	3109	-1681	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCCAGAAGATGAAGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	110659614	110659142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_110659307_110659453
ENSMUST00000129020.3	chr10	+	787	7	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	114	-1124	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGCCTGAATTCTACCT	NA	NA	NA	NA	NA	NA	NA	NA	75411909	75420737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_+_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417157_75417268_75420653
ENSMUST00000129070.8	chrX	-	738	6	ISM	ENSMUSG00000002010.18	ENSMUST00000052761.9	1331	13	6201	0	6172	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	227	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	72824302	72822568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179
ENSMUST00000129125.2	chr6	+	889	2	ISM	ENSMUSG00000030284.12	ENSMUST00000032422.6	2306	10	8722	3	8722	-3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAAAAGCTTCAGTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	113468979	113470296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_113469220_113469647
ENSMUST00000129138.2	chr4	-	632	3	FSM	ENSMUSG00000034785.16	ENST00000388876.3	596	3	-6	-30	1	30	multi-exon	FALSE	canonical	NA	NA	NA	NA	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGGGGACCAGCAGGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	107164321	107149530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_107149620_107150945_107151146_107163978
ENSMUST00000129162.3	chr11	+	953	2	FSM	ENSMUSG00000048497.12	ENSMUST00000129162.3	1828	2	0	875	0	243	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGTGGCCCTTACCCCGGC	NA	NA	NA	NA	NA	NA	NA	NA	62540274	62556305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_62540418_62555495
ENSMUST00000129174.8	chr14	-	729	3	FSM	ENSMUSG00000022090.11	ENSMUST00000129174.8	729	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGACACGAAAGCGTATGG	NA	NA	NA	NA	NA	NA	NA	NA	70405288	70401810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_70402243_70403538_70403657_70405109
ENSMUST00000129218.7	chr1	+	441	2	ISM	ENSMUSG00000026404.13	ENSMUST00000027655.8	2166	8	0	23289	0	-23289	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTTTCTAAAACCCAGCGG	NA	NA	NA	NA	NA	NA	NA	NA	136343008	136344607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_136343162_136344319
ENSMUST00000129256.2	chr11	-	650	2	FSM	ENSMUSG00000017288.16	ENSMUST00000129256.2	650	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTTTATGTGTGTATG	NA	NA	NA	NA	NA	NA	NA	NA	76070464	76067784	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_76068209_76070238
ENSMUST00000129321.2	chr11	+	2081	2	FSM	ENSMUSG00000043419.12	ENSMUST00000129321.2	2081	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGAAAGACTGTTATTG	NA	NA	NA	NA	NA	NA	NA	NA	69231286	69233467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69231885_69231984
ENSMUST00000129339.8-1	chr1	+	1375	6	FSM	ENSMUSG00000025967.17	ENSMUST00000129339.8	1939	6	0	564	0	266	multi-exon	FALSE	canonical	NA	NA	NA	NA	918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGCTGTTAGCAGTAC	NA	NA	NA	NA	NA	NA	NA	NA	63215983	63219081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
ENSMUST00000129352.3	chr13	-	876	6	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	360	13373	360	-13373	internal_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGTGTTTTAAGCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	47259306	47251630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047
ENSMUST00000129367.8	chrX	-	641	5	ISM	ENSMUSG00000002010.18	ENST00000370093.5	1161	9	4649	1128	4649	-1128	internal_fragment	TRUE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCCAACATCATGTATGT	NA	NA	NA	NA	NA	NA	NA	NA	72825825	72824193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611
ENSMUST00000129414.9	chr9	+	354	5	FSM	ENSMUSG00000084786.10	ENSMUST00000129414.9	2114	5	1503	257	0	-62	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCCTCATCTGACACTGG	NA	NA	NA	NA	NA	NA	NA	NA	20556116	20558003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556917_20556956_20557911
ENSMUST00000129469.8	chr2	-	1782	14	NIC	ENSMUSG00000089917.8	novel	1849	15	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAGAAAATGATCGTGT	NA	NA	NA	NA	NA	NA	NA	NA	181223765	181210955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
ENSMUST00000129489.8	chr2	-	2316	15	NNC	ENSMUSG00000026767.13	novel	2344	15	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	156	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	NA	NA	NA	NA	NA	NA	NA	12424255	12352073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408978_12410670_12410732_12414811_12414892_12423969
ENSMUST00000129680.8	chr11	+	1178	4	FSM	ENSMUSG00000001240.14	ENSMUST00000129680.8	1178	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGCCTTCCTAGTGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	101136853	101139076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_101137399_101137880_101137971_101138411_101138515_101138636
ENSMUST00000129710.8	chr11	-	928	5	NNC	ENSMUSG00000061306.17	novel	4578	17	NA	NA	40854	-1353	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCAGGGGGCCCCGATTG	NA	NA	NA	NA	NA	NA	NA	NA	120001284	119996630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_119996860_119997259_119997437_119999292_119999317_120000257_120000363_120000891
ENSMUST00000129758.3	chr4	+	440	2	FSM	ENSMUSG00000028407.5	ENSMUST00000129758.3	1044	2	0	604	0	-604	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTCCTGGAACTCACT	NA	NA	NA	NA	NA	NA	NA	NA	40269578	40270336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_40269720_40270037
ENSMUST00000129791.3	chr13	-	2819	4	FSM	ENSMUSG00000087662.3	ENSMUST00000129791.3	2819	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGTTCAATGTGGCAATC	NA	NA	NA	NA	NA	NA	NA	NA	31514750	31509916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_31510128_31510623_31513130_31513746_31513806_31514707
ENSMUST00000129822.8	chr2	-	860	8	NNC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	210	-194	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTCCTGCTGCCTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	26806332	26803588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_-_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805762_26805966_26806019_26806268
ENSMUST00000129900.2	chr16	-	1993	6	NNC	ENSMUSG00000022772.13	novel	6332	10	NA	NA	12810	-13316	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTAAAGGTTTTTAATT	NA	NA	NA	NA	NA	NA	NA	NA	31809171	31794639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr16_-_31794848_31796497_31796576_31802081_31802130_31802310_31802450_31802585_31802692_31807757
ENSMUST00000129968.2	chr4	+	429	2	ISM	ENSMUSG00000042616.9	ENSMUST00000143712.3	1473	11	29075	5	29075	-5	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCAGACCTTCCCCATTA	NA	NA	NA	NA	NA	NA	NA	NA	125981471	125982452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_125981563_125982114
ENSMUST00000130043.8	chr3	-	571	5	ISM	ENSMUSG00000015745.10	ENSMUST00000015889.10	1931	6	333	1129	333	-1129	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGTGCTGAGAGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	95902980	95896869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95896946_95898112_95898215_95898755_95898861_95899449_95899591_95902833
ENSMUST00000130048.8	chr19	-	1158	7	FSM	ENSMUSG00000024962.14	ENSMUST00000130048.8	1158	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTGCTTCTGTCATTGT	NA	NA	NA	NA	NA	NA	NA	NA	6964997	6959840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6960236_6962728_6962864_6963172_6963209_6963388_6963463_6963657_6963855_6964141_6964185_6964719
ENSMUST00000130064.8	chr6	-	829	4	NNC	ENSMUSG00000055850.13	novel	1191	4	NA	NA	986	161	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAGGGCAAGGCTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	72338379	72337066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_72337626_72337857_72337933_72338099_72338210_72338294
ENSMUST00000130163.8	chr18	+	1386	5	FSM	ENSMUSG00000008301.12	ENSMUST00000130163.8	1386	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTACCATTTCTACTGAG	NA	NA	NA	NA	NA	NA	NA	NA	56695514	56720261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_56695796_56708533_56709121_56713251_56713373_56717362_56717447_56719948
ENSMUST00000130216.3	chr17	+	641	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	21	1956	21	-1956	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTGCAAAAGTGGTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	29251622	29260391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
ENSMUST00000130320.8	chr10	+	1625	9	FSM	ENSMUSG00000001786.15	ENSMUST00000130320.8	5388	9	15	3748	15	-198	multi-exon	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAACTGGATGCTGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	85857850	85883989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_85858009_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ENSMUST00000130392.8	chr11	-	1540	3	FSM	ENSMUSG00000087060.8	ENSMUST00000130392.8	1540	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGTGTATCGTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	16901099	16885153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_16886565_16900881_16900931_16901019
ENSMUST00000130411.7	chr2	+	3527	6	FSM	ENSMUSG00000016921.15	ENSMUST00000130411.7	3527	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2014	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGTTCTTCATTTATTG	NA	NA	NA	NA	NA	NA	NA	NA	162773447	162779041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_162773698_162773913_162774063_162775345_162775471_162775573_162775783_162776147_162776232_162776331
ENSMUST00000130524.5	chr2	+	250	3	ISM	ENSMUSG00000051177.17	ENSMUST00000070724.12	3853	32	0	411482	0	-411285	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGGAACAGAGCCTGTGCC	NA	NA	NA	NA	NA	NA	NA	NA	134628449	134830113	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_134628552_134655520_134655599_134830043
ENSMUST00000130593.8	chr4	-	564	5	NNC	ENSMUSG00000028470.11	novel	610	5	NA	NA	18	2	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTATCCCTGTCTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	43656448	43654226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_43654412_43654512_43654586_43654715_43654791_43654905_43655047_43656358
ENSMUST00000130658.2	chr4	+	627	3	FSM	ENSMUSG00000051351.15	ENST00000374608.3	2924	3	34	2263	34	-2263	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTCGAAAGTGGGGACCA	NA	NA	NA	NA	NA	NA	NA	NA	136013414	136017395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_136013793_136014499_136014627_136017273
ENSMUST00000130778.2	chr3	+	1355	5	NNC	ENSMUSG00000027879.10	novel	2810	5	NA	NA	-9	-1425	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATGCCTTGAAATTATAT	NA	NA	NA	NA	NA	NA	NA	NA	97808531	97829167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_+_97808737_97814540_97814647_97819894_97820056_97821815_97821963_97828431
ENSMUST00000130799.8	chr13	+	1580	8	FSM	ENSMUSG00000021514.19	ENSMUST00000130799.8	1580	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGCTGTGATAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	65426627	65452035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_65426802_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65443413_65443541_65451631
ENSMUST00000130875.8	chr6	+	541	4	FSM	ENSMUSG00000073155.13	ENSMUST00000130875.8	690	4	16	133	16	-133	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCCTACCGCCTACTGTC	NA	NA	NA	NA	NA	NA	NA	NA	35229666	35238439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_35229718_35229890_35229981_35237344_35237399_35238093
ENSMUST00000130981.8	chr7	-	647	3	ISM	ENSMUSG00000025724.13	ENST00000559729.5	1012	5	24371	65	24234	-59	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGCGATCATAAGTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	80572968	80565183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80565653_80565922_80565981_80572848
ENSMUST00000131011.2	chr13	-	540	3	FSM	ENSMUSG00000017778.15	ENSMUST00000131011.2	540	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGCCTCGTCTCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	86195023	86192934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_86193028_86193845_86193989_86194719
ENSMUST00000131056.2	chr17	-	886	7	NNC	ENSMUSG00000042625.17	novel	3277	21	NA	NA	13147	-3058	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTTTGATCACCGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	56878438	56872996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_-_56873083_56873325_56873617_56873878_56874019_56874532_56874625_56875894_56876023_56878209_56878320_56878399
ENSMUST00000131064.2	chr8	+	2255	2	FSM	ENSMUSG00000054910.6	ENSMUST00000131064.2	2255	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACATTTTATTGAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	12722426	12729229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_12723026_12727573
ENSMUST00000131121.2	chr5	-	599	2	ISM	ENSMUSG00000029524.17	ENSMUST00000112067.8	1645	5	1441	2150	1441	-2150	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGTTTCACTTCGCGAG	NA	NA	NA	NA	NA	NA	NA	NA	115620915	115618218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_115618585_115620682
ENSMUST00000131121.2-0	chr5	-	607	2	ISM	ENSMUSG00000029524.17	ENSMUST00000112067.8	1645	5	1183	2400	1183	-2400	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCTCACTGAGGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	115621173	115618468	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_115618585_115620682
ENSMUST00000131179.8	chr14	-	676	5	NNC	ENSMUSG00000048922.19	novel	3568	15	NA	NA	18876	-1441	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGTAAGTGTCAAAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	67934183	67915244	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr14_-_67915472_67917610_67917780_67931074_67931201_67932413_67932500_67934115
ENSMUST00000131222.2	chr14	-	902	3	FSM	ENSMUSG00000085829.2	ENSMUST00000131222.2	902	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGTGAGAAAAGCCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	76082404	76080818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_76081423_76081990_76082098_76082213
ENSMUST00000131379.4	chr7	+	2276	4	FSM	ENSMUSG00000054272.7	ENSMUST00000131379.4	2276	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGAGTAGTTTGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	10739671	10744474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_10739779_10740385_10740858_10742693_10742854_10742937
ENSMUST00000131648.8	chr13	-	2680	6	ISM	ENSMUSG00000021196.15	ENSMUST00000138703.8	4145	22	59811	0	59759	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTCAAAGATATGTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	6639002	6629803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524
ENSMUST00000131656.2	chr4	+	1415	3	FSM	ENSMUSG00000048351.15	ENSMUST00000131656.2	3714	3	49	2250	49	-2250	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAACAGACCCTTGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	108185385	108196491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_108185488_108189407_108189549_108195319
ENSMUST00000131662.2	chr6	-	1185	12	NNC	ENSMUSG00000040250.15	novel	2479	17	NA	NA	1069	-5369	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGATCAGTTAGAAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	146477765	146456501	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463091_146463116_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722
ENSMUST00000131665.8	chr2	-	649	6	ISM	ENSMUSG00000026958.14	ENSMUST00000028332.8	1682	13	301	2248	301	-2248	internal_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTCGCCATGATGGACT	NA	NA	NA	NA	NA	NA	NA	NA	25246070	25244549	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040
ENSMUST00000131676.8	chr2	+	1272	3	FSM	ENSMUSG00000078898.10	ENSMUST00000131676.8	1272	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACTGTTCCCATTTCATG	NA	NA	NA	NA	NA	NA	NA	NA	175214228	175223579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_175214367_175222239_175222367_175222572
ENSMUST00000131728.4	chr10	-	2483	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTGTGTGTTCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	128401856	128393636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
ENSMUST00000131801.2	chr2	-	3215	3	FSM	ENSMUSG00000085546.2	ENSMUST00000131801.2	3215	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTGTGACTGAACTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	156181301	156174236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_156176535_156176964_156177376_156180795
ENSMUST00000131813.2	chr2	+	760	2	ISM	ENSMUSG00000026977.18	ENSMUST00000067542.15	2244	10	7334	13564	7334	-13564	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGGCAGGGCAGCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	60062446	60064737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_60062712_60064242
ENSMUST00000131871.8	chr16	+	1737	10	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	NA	NA	NA	NA	NA	NA	NA	NA	22926527	22932697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUST00000131935.2	chr4	-	655	2	NNC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	24	-6704	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTCAGAGGACAAAGAGTC	NA	NA	NA	NA	NA	NA	NA	NA	152112094	152110934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_152111517_152112021
ENSMUST00000131936.3	chr6	-	399	3	NNC	ENSMUSG00000030035.15	novel	1314	4	NA	NA	1066	-114	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTTCCTCCCAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	83097189	83096530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_83096702_83096848_83097026_83097138
ENSMUST00000132032.8	chr8	-	2542	7	FSM	ENSMUSG00000031601.17	ENSMUST00000132032.8	2542	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGGTTGTGACTGATGGC	NA	NA	NA	NA	NA	NA	NA	NA	40968888	40945582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40968744
ENSMUST00000132034.5	chr5	-	576	2	FSM	ENSMUSG00000038803.8	ENSMUST00000132034.5	576	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTTTGTGGTCCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	31065069	31063861	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_31064111_31064742
ENSMUST00000132100.2	chr1	-	472	2	FSM	ENSMUSG00000086053.2	ENSMUST00000132100.2	472	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGATGAGCGTACCCCT	NA	NA	NA	NA	NA	NA	NA	NA	75373007	75368774	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_75369090_75372850
ENSMUST00000132245.8	chr11	+	293	4	ISM	ENSMUSG00000018411.18	ENST00000535772.6	1314	10	107	33317	-3	-33263	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGTGGCCCAAATCGACT	NA	NA	NA	NA	NA	NA	NA	NA	104122406	104185750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_104122434_104173193_104173307_104177948_104178036_104185684
ENSMUST00000132253.5	chr5	-	1144	3	FSM	ENSMUSG00000038803.8	ENSMUST00000132253.5	1144	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAAAGTGCATTTAGTC	NA	NA	NA	NA	NA	NA	NA	NA	31065132	31063228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_31064111_31064742_31064881_31065008
ENSMUST00000132281.2	chr4	-	451	5	NNC	ENSMUSG00000029059.10	novel	883	7	NA	NA	-25	-936	at_least_one_novel_splicesite	FALSE	non_canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGAGCCCCATCTTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	154983592	154981791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_154981882_154981962_154982027_154982584_154982637_154982932_154983111_154983525
ENSMUST00000132389.3	chr5	+	2347	1	FSM	ENSMUSG00000106943.3	ENSMUST00000066220.4	2346	1	0	-1	0	1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACACAAGACAGGAAAGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	74253720	74256067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_74253700_74256100
ENSMUST00000132530.2	chr3	+	1555	3	ISM	ENSMUSG00000063052.10	ENSMUST00000072080.10	4142	15	26017	1054	26017	-1054	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTGAAATACAGGTTAGT	NA	NA	NA	NA	NA	NA	NA	NA	157768315	157773070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_157768364_157769320_157769507_157771749
ENSMUST00000132564.2	chr13	+	751	2	FSM	ENSMUSG00000086480.2	ENSMUST00000132564.2	751	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACAATTTTATGTTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	111862050	111871658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_111862190_111871046
ENSMUST00000132584.8	chr11	+	695	6	FSM	ENSMUSG00000086003.8	ENSMUST00000132584.8	695	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTTTACCTGCTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	94024310	94046602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_94024382_94029312_94029490_94040661_94040792_94042163_94042239_94046281_94046324_94046402
ENSMUST00000132815.3	chr4	-	1005	2	FSM	ENSMUSG00000045973.19	ENSMUST00000132815.3	1005	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATCATTATGTGAGATG	NA	NA	NA	NA	NA	NA	NA	NA	45408760	45399240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_45400180_45408694
ENSMUST00000132846.2	chr11	+	441	5	FSM	ENSMUSG00000071866.13	ENSMUST00000132846.2	1170	5	433	296	-31	-283	multi-exon	FALSE	canonical	NA	NA	NA	NA	860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACATTGTGGAAGCCATG	NA	NA	NA	NA	NA	NA	NA	NA	6365875	6369521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_6365980_6368100_6368132_6368225_6368315_6369112_6369286_6369477
ENSMUST00000132860.2	chr5	+	803	2	ISM	ENSMUSG00000036323.15	ENST00000580060.1	1744	15	18803	-451	18803	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATAAATTGTCCTGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	77145251	77146663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_77145430_77146038
ENSMUST00000132939.2	chr14	-	882	1	FSM	ENSMUSG00000087286.2	ENSMUST00000132939.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGATTTTGTAAAAGAAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	60277940	60277058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_60277100_60277900
ENSMUST00000133012.8	chr7	+	1524	6	FSM	ENSMUSG00000025505.17	ENSMUST00000133012.8	1524	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAGAAAAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	140908042	140916724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_140908180_140911330_140911475_140912822_140912922_140913560_140913645_140913923_140914017_140915757
ENSMUST00000133054.8	chr11	+	279	3	ISM	ENSMUSG00000020877.12	ENSMUST00000021249.11	1530	8	63	3029	63	-3029	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCCGCCCCTCTTGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	96920826	96921755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_96920882_96921241_96921416_96921705
ENSMUST00000133071.8	chr17	-	1128	8	FSM	ENSMUSG00000061046.10	ENSMUST00000133071.8	1128	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGCAGGTCTGTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	26004556	26001762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26004396
ENSMUST00000133105.2	chr4	-	820	3	NIC	ENSMUSG00000040520.8	novel	4867	5	NA	NA	102	-412	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	149	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATCTCATCAGAATTGGA	NA	NA	NA	NA	NA	NA	NA	NA	26340895	26328044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_26328309_26329085_26329163_26340416
ENSMUST00000133157.8	chr4	+	1468	12	FSM	ENSMUSG00000028318.15	ENSMUST00000133157.8	2986	12	0	1518	0	-191	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAACCTATAACCCAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	45018582	45032174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_45018793_45019273_45019378_45022207_45022285_45023192_45023279_45025769_45025829_45026763_45026909_45027363_45027472_45028002_45028100_45029337_45029472_45030752_45030835_45031366_45031499_45031940
ENSMUST00000133280.2	chr13	-	1609	2	FSM	ENSMUSG00000118537.2	ENSMUST00000133280.2	1609	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTGATTTTGTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	104314947	104310229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_104311513_104314621
ENSMUST00000133390.2	chr7	+	508	3	ISM	ENSMUSG00000030870.13	ENST00000567264.1	641	4	3	214	3	-214	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAAAGATGCTGCCCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	121666669	121668143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_121666708_121666886_121667217_121668003
ENSMUST00000133412.8	chr3	-	666	5	ISM	ENSMUSG00000005779.13	ENSMUST00000005923.7	1183	7	99	805	99	-805	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	512	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAAATTCTGGAGCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	94794173	94792208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_94792345_94792970_94793053_94793385_94793533_94793751_94793959_94794079
ENSMUST00000133455.2	chr4	+	2251	3	FSM	ENSMUSG00000085843.2	ENSMUST00000133455.2	2251	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTCTGCCTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	98682004	98687137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_98682120_98684245_98684324_98685079
ENSMUST00000133480.8	chr1	+	390	4	ISM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	22	67218	-21	-67218	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGGAGCAGGTGACCTC	NA	NA	NA	NA	NA	NA	NA	NA	85992362	85999655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548
ENSMUST00000133530.8	chr4	-	646	4	ISM	ENSMUSG00000033379.14	ENSMUST00000150204.8	935	7	1426	-3	1426	3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGAGGCTTCTGTTGG	NA	NA	NA	NA	NA	NA	NA	NA	117743091	117741526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000
ENSMUST00000133553.8	chr7	+	825	6	NNC	ENSMUSG00000030611.11	novel	1056	6	NA	NA	237	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	78433103	78442737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_78433172_78433320_78433435_78438422_78438522_78440384_78440515_78441621_78441688_78442389
ENSMUST00000133628.2	chr8	+	749	3	ISM	ENSMUSG00000031950.8	ENSMUST00000034428.8	1677	4	365	870	335	-173	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGTGTTAGATGGCTAA	NA	NA	NA	NA	NA	NA	NA	NA	112667699	112679374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_112667848_112669133_112669307_112678946
ENSMUST00000133650.9	chr17	-	1398	10	NNC	ENSMUSG00000025728.17	novel	3173	11	NA	NA	4732	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGGTGTCCTGCTCGTC	NA	NA	NA	NA	NA	NA	NA	NA	26156136	26145394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_-_26145490_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737
ENSMUST00000133762.2	chr3	+	1373	6	ISM	ENSMUSG00000038712.17	ENSMUST00000168223.2	1812	9	4038	2	4038	-2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATTTGCGTTCCTACCT	NA	NA	NA	NA	NA	NA	NA	NA	95199296	95203472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202610_95202737_95202961
ENSMUST00000133796.2	chr10	-	831	2	ISM	ENSMUSG00000040006.14	ENSMUST00000124838.2	1525	8	10340	-6	10340	-3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTGCTTTATTTTTAATT	NA	NA	NA	NA	NA	NA	NA	NA	7646315	7643713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_7644350_7646120
ENSMUST00000133808.2	chr2	-	2483	2	FSM	ENSMUSG00000087679.3	ENSMUST00000133808.2	2483	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3939	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGAGTGATTGCTTACG	NA	NA	NA	NA	NA	NA	NA	NA	26030533	26026825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_26028926_26030150
ENSMUST00000133826.2	chr13	-	569	4	ISM	ENSMUSG00000021660.15	ENSMUST00000152704.8	888	6	10	3142	-8	-3082	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	487	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTCAGGTTCAGAATTG	NA	NA	NA	NA	NA	NA	NA	NA	98453504	98449546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_98449802_98450146_98450261_98452737_98452807_98453373
ENSMUST00000133836.2	chr19	-	2378	4	NNC	ENSMUSG00000024732.8	novel	3003	4	NA	NA	1934	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCACCTTGCTCCGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	10924696	10918844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_10920654_10920841_10920917_10922646_10922777_10924332
ENSMUST00000133839.8	chr4	+	773	7	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	288	-3540	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	1739	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGTAAAGACACTGAGCG	NA	NA	NA	NA	NA	NA	NA	NA	150321696	150329790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326223_150326283_150328461_150328532_150328697_150328832_150329571
ENSMUST00000133843.8	chr7	-	833	6	FSM	ENSMUSG00000110040.2	ENSMUST00000133843.8	833	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGCTGCAGCGGCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	141936404	141924884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_141925048_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328
ENSMUST00000133910.3	chr7	-	849	2	FSM	ENSMUSG00000087412.5	ENSMUST00000133910.3	849	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TATAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	92833383	92828189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_92828866_92833210
ENSMUST00000133963.2	chr19	+	751	2	FSM	ENSMUSG00000087367.2	ENSMUST00000133963.2	751	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTGTATCATATAGATT	NA	NA	NA	NA	NA	NA	NA	NA	45737946	45740749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_45738117_45740168
ENSMUST00000133989.8	chr14	+	873	4	FSM	ENSMUSG00000055128.16	ENSMUST00000133989.8	873	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTTTATCCTTCTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	47069685	47084045	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_47069837_47077613_47077754_47083330_47083509_47083641
ENSMUST00000134004.3	chr15	+	1911	5	ISM	ENSMUSG00000022265.8	ENSMUST00000022875.7	3498	12	104770	457	104770	-457	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCAGTGATTGCCTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	27571532	27594538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_27571741_27590428_27590559_27591003_27591128_27591522_27591623_27593189
ENSMUST00000134048.2	chr4	-	1966	2	ISM	ENSMUSG00000041153.10	ENSMUST00000037198.10	2658	6	11767	106	11767	-106	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCTTGTGTGAACACTG	NA	NA	NA	NA	NA	NA	NA	NA	16002121	15997226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_15999001_16001929
ENSMUST00000134091.2	chr2	+	1827	4	ISM	ENSMUSG00000008333.13	ENSMUST00000008477.13	2061	7	5134	0	5134	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAACTATTCTGACAGA	NA	NA	NA	NA	NA	NA	NA	NA	142910092	142914773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_142910322_142911293_142911345_142912807_142912897_142913315
ENSMUST00000134096.2	chr4	-	2180	2	ISM	ENSMUSG00000012117.14	ENSMUST00000012262.12	3133	9	20663	118	20169	-118	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTCAGAAATTAAGATGGG	NA	NA	NA	NA	NA	NA	NA	NA	133707535	133696485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_133698565_133707434
ENSMUST00000134101.8	chr2	+	450	5	ISM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	197	11134	197	-11134	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCCTCTGATAAAAAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	127429338	127437615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583
ENSMUST00000134115.8	chr1	+	1738	5	FSM	ENSMUSG00000062169.14	ENSMUST00000134115.8	3268	5	0	1530	0	1216	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGACTGTACACTGTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	180978495	180995029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_180978627_180981299_180981369_180983423_180983537_180989639_180989781_180993745
ENSMUST00000134173.8	chr5	-	777	6	NNC	ENSMUSG00000001098.16	novel	3103	7	NA	NA	8324	-84	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCGAGCGCGTGAGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	114510203	114503766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_114503928_114505269_114505466_114506402_114506456_114507001_114507089_114508119_114508290_114510093
ENSMUST00000134176.8	chr7	-	1189	7	FSM	ENSMUSG00000030590.16	ENSMUST00000134176.8	1189	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	28855608	28851936	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_28852273_28852746_28852915_28853843_28853957_28854040_28854119_28854576_28854783_28855099_28855235_28855455
ENSMUST00000134197.2	chr5	+	534	3	FSM	ENSMUSG00000063820.12	ENST00000640821.3	622	3	-4	92	-4	-92	multi-exon	FALSE	canonical	NA	NA	NA	NA	1972	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCATTGCTCGGCTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	77154318	77158453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_77154482_77155078_77155255_77158258
ENSMUST00000134214.3	chr15	-	899	4	FSM	ENSMUSG00000116358.2	ENSMUST00000134214.3	899	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	383	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGGCCACTTATGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	98851432	98830017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_98830444_98849068_98849218_98849349_98849573_98851331
ENSMUST00000134293.2	chr11	-	1207	8	ISM	ENSMUSG00000042302.15	ENST00000405015.7	3771	22	0	139751	0	-139751	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGACCTGTAGACATGA	NA	NA	NA	NA	NA	NA	NA	NA	22235872	22096531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_22096701_22101066_22101190_22119034_22119175_22122824_22123007_22182001_22182056_22189142_22189239_22197969_22198028_22235487
ENSMUST00000134327.2	chr1	+	726	6	ISM	ENSMUSG00000026127.14	ENSMUST00000027303.14	5836	9	86	5329	86	-5329	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCCAAAAGACGACAGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	34479017	34483108	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077
ENSMUST00000134335.2	chr11	-	1320	2	ISM	ENSMUSG00000020935.9	ENSMUST00000021313.9	1744	5	19620	2	19620	-2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACTGAATTCCACTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	102888374	102884874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_102885999_102888178
ENSMUST00000134368.8	chrX	+	648	3	ISM	ENSMUSG00000041380.14	ENSMUST00000112831.3	809	6	-393	110623	116	-110623	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGCTTACTTGATGCTC	NA	NA	NA	NA	NA	NA	NA	NA	145745625	145855525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_145746071_145764543_145764602_145855380
ENSMUST00000134479.8	chr19	-	1438	9	FSM	ENSMUSG00000037916.15	ENSMUST00000134479.8	1438	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAACTTTGCTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	4062666	4057496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4062550
ENSMUST00000134512.8	chr6	+	1839	5	FSM	ENSMUSG00000086427.9	ENSMUST00000134512.8	1839	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	260	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTGTATTCAGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	52222222	52226749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_52222797_52222964_52223181_52223294_52223512_52223642_52223789_52226063
ENSMUST00000134600.2	chr6	+	1188	2	FSM	ENSMUSG00000084950.8	ENSMUST00000134600.2	1434	2	0	246	0	-246	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTGATTGGTGTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	87957864	87960916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_87958078_87959941
ENSMUST00000134606.8	chr6	-	883	7	ISM	ENSMUSG00000068329.13	ENSMUST00000089645.13	1725	8	734	211	605	-211	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAATGAATGACTGGACCG	NA	NA	NA	NA	NA	NA	NA	NA	83030818	83028457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593
ENSMUST00000134617.2	chr11	-	471	1	FSM	ENSMUSG00000085342.2	ENSMUST00000134617.2	471	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGTAGAGCAGAGTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	58400087	58399616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_58399600_58400100
ENSMUST00000134661.8	chr2	+	1155	9	FSM	ENSMUSG00000027331.16	ENSMUST00000134661.8	4602	9	0	3447	0	91	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCCAGTTGATGCTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	118644483	118664730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
ENSMUST00000134675.8	chr8	+	1692	12	FSM	ENSMUSG00000031626.19	ENSMUST00000134675.8	1692	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGATTTATGAGGCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	46111706	46229919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_46111979_46189189_46189240_46194523_46194617_46198456_46198484_46198822_46198879_46212089_46212229_46216055_46216229_46222865_46222933_46223582_46223628_46225570_46225746_46228625_46228741_46229439
ENSMUST00000134691.2	chr11	-	782	4	ISM	ENSMUSG00000020773.12	ENSMUST00000021120.6	2204	6	2211	640	2202	-640	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGGGCCGGCTGGGCCGCA	NA	NA	NA	NA	NA	NA	NA	NA	115998861	115997217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115997468_115997757_115997833_115998249_115998449_115998603
ENSMUST00000134778.3	chr10	-	621	6	ISM	ENSMUSG00000040354.15	ENSMUST00000171564.8	2962	22	14022	4	13865	-4	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGCCCTCTCCTGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	127133633	127132094	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_127132310_127132409_127132503_127132585_127132610_127132741_127132814_127133334_127133522_127133603
ENSMUST00000134787.8	chr13	-	1275	3	FSM	ENSMUSG00000085936.8	ENSMUST00000134787.8	1275	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAATCACAGTATA	NA	NA	NA	NA	NA	NA	NA	NA	28705091	28644016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_28645045_28689688_28689897_28705052
ENSMUST00000134803.2	chr6	+	764	5	ISM	ENSMUSG00000030341.18	ENSMUST00000032491.15	2156	10	10704	610	10704	-610	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACGCTGGAAGTAGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	125337389	125338837	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_125337537_125337672_125337787_125338054_125338084_125338261_125338548_125338649
ENSMUST00000134813.2	chr2	-	629	3	ISM	ENSMUSG00000036890.14	ENSMUST00000049051.13	2197	8	185090	718	185090	-711	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	164	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATGTGGTGCCACATTGA	NA	NA	NA	NA	NA	NA	NA	NA	44461359	44455144	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_44455547_44460430_44460523_44461224
ENSMUST00000134832.3	chr19	+	438	2	FSM	ENSMUSG00000067242.12	ENST00000627699.1	654	2	-1	217	-1	-217	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATATTGTTTCTGTTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	38253260	38254166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_38253555_38254022
ENSMUST00000134882.8	chr2	-	3354	12	NNC	ENSMUSG00000026933.18	novel	7981	17	NA	NA	-63	-8814	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGGCCCCAGTCCACTT	NA	NA	NA	NA	NA	NA	NA	NA	25873073	25828551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_-_25830326_25830876_25830962_25831389_25831482_25834437_25834616_25834953_25835051_25835145_25835286_25842689_25842832_25843926_25843987_25846258_25846340_25855674_25855837_25856697_25856961_25872793
ENSMUST00000134894.2	chr11	+	2188	11	ISM	ENSMUSG00000017686.18	ENSMUST00000055056.16	4260	20	33556	1163	33492	-23	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAACCTATTTTTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	80133436	80157570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80148339_80148463_80156567
ENSMUST00000134929.8	chr11	+	2031	4	FSM	ENSMUSG00000110344.2	ENSMUST00000134929.8	2031	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGCAATCTTTTTTAATG	NA	NA	NA	NA	NA	NA	NA	NA	90078509	90142081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_90079062_90099809_90099873_90139630_90140562_90141596
ENSMUST00000134967.2	chr12	-	487	2	ISM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	1997	2632	1997	-2632	internal_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTGGGTCTGTGTTGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	110660726	110660093	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_110660311_110660456
ENSMUST00000134983.2	chr4	+	294	2	ISM	ENSMUSG00000028703.15	ENSMUST00000030471.9	3065	10	14213	3966	14213	-3966	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACCAGAGAATGCTGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	115946678	115950274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_115946767_115950068
ENSMUST00000135007.3	chr17	-	201	2	ISM	ENSMUSG00000047407.18	ENSMUST00000172229.8	1446	3	3464	1022	3464	-1016	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGAGAAAGGATGGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	71153321	71152221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_71152268_71153166
ENSMUST00000135021.2	chr3	+	552	2	ISM	ENSMUSG00000027955.17	ENST00000296530.12	2280	5	77	55373	77	-55373	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	665	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGGGGCAGCTCGTAAACT	NA	NA	NA	NA	NA	NA	NA	NA	79792237	79793550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_79792534_79793294
ENSMUST00000135021.2-0	chr3	+	1349	2	ISM	ENSMUSG00000027955.17	ENST00000296530.12	2280	5	77	54576	77	-54576	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	478	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGAAGTGTTCGCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	79792237	79794347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_79792534_79793294
ENSMUST00000135052.8	chr8	+	532	5	NNC	ENSMUSG00000074247.11	novel	1933	5	NA	NA	6	-1385	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCTTGAGTTTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	71921854	71927357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_+_71921970_71924684_71924762_71924838_71924891_71926418_71926481_71927131
ENSMUST00000135091.2	chr2	-	800	2	FSM	ENSMUSG00000051319.7	ENSMUST00000135091.2	800	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	435	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGACCAAAGCCTTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	127634408	127633307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_127633753_127634053
ENSMUST00000135131.2	chr12	-	1563	4	FSM	ENSMUSG00000037904.15	ENSMUST00000135131.2	1563	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGAGGGATCTGCCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	110945429	110942862	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_110943983_110944097_110944205_110944381_110944562_110945273
ENSMUST00000135140.8	chr1	-	1507	10	NNC	ENSMUSG00000026171.13	novel	1479	10	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTATGTGGTATGACTCTT	NA	NA	NA	NA	NA	NA	NA	NA	74640531	74632906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_-_74633562_74633718_74633854_74634367_74634461_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74638005_74638224_74638300_74640483
ENSMUST00000135151.3	chr6	+	293	3	FSM	ENSMUSG00000052751.17	ENSMUST00000135151.3	3057	3	40	2724	40	-2722	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTCTTTTCTGGGCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	48570873	48573291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_48570987_48571795_48571911_48573226
ENSMUST00000135166.8	chr13	-	2416	9	FSM	ENSMUSG00000057554.14	ENSMUST00000135166.8	2416	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGAATACTCTCTGGAAT	NA	NA	NA	NA	NA	NA	NA	NA	12476387	12454298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12476307
ENSMUST00000135402.4	chr19	-	2043	4	FSM	ENSMUSG00000084957.4	ENSMUST00000135402.4	2043	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAATCAACAGTGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	53933058	53918291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932847
ENSMUST00000135453.2	chr1	+	554	3	ISM	ENSMUSG00000033021.17	ENST00000358215.8	1794	13	6192	2	6192	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	NA	NA	NA	NA	NA	NA	NA	75418809	75419817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_75418922_75419087_75419257_75419544
ENSMUST00000135454.8	chr4	+	2997	8	FSM	ENSMUSG00000028608.16	ENSMUST00000135454.8	2997	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACCTAGTGATGAAAAACA	NA	NA	NA	NA	NA	NA	NA	NA	107747009	107756581	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
ENSMUST00000135463.2	chr8	-	298	2	ISM	ENSMUSG00000005150.17	ENSMUST00000093357.12	1238	9	0	5335	0	-5335	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGACGCTGCTGCGGACCT	NA	NA	NA	NA	NA	NA	NA	NA	85807375	85806998	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85807063_85807141
ENSMUST00000135503.2	chr7	-	256	2	ISM	ENSMUSG00000030533.17	ENSMUST00000032748.15	3260	20	48	14265	48	-13940	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAGCTGGTGAGGGGATC	NA	NA	NA	NA	NA	NA	NA	NA	79989919	79989307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_79989461_79989816
ENSMUST00000135525.2	chr5	-	1154	5	ISM	ENSMUSG00000028944.15	ENSMUST00000114975.8	2205	12	36810	431	36810	-192	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCTCTCAAGTGGAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	25076657	25068176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491
ENSMUST00000135570.8	chr7	-	960	10	FSM	ENSMUSG00000030751.19	ENSMUST00000135570.8	960	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTCCAGATGTAAGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	113875261	113864029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875195
ENSMUST00000135596.9	chr11	+	610	5	ISM	ENSMUSG00000018906.15	ENSMUST00000019050.12	2230	16	12	20017	0	-20017	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTGTCCTTTTGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	53991800	54002461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248
ENSMUST00000135596.9-0	chr11	+	533	5	ISM	ENSMUSG00000018906.15	ENSMUST00000019050.12	2230	16	17	20089	5	-20089	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCGGCAGGTGAGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	53991805	54002389	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248
ENSMUST00000135625.8	chr2	-	641	4	ISM	ENSMUSG00000027288.17	ENST00000565380.5	3932	20	-42	22286	-36	-22272	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGGGTTGGAAACATTCC	NA	NA	NA	NA	NA	NA	NA	NA	120394324	120362366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_120362704_120376323_120376386_120385711_120385797_120394167
ENSMUST00000135680.8	chr1	+	1850	3	FSM	ENSMUSG00000058267.14	ENSMUST00000135680.8	2999	3	0	1149	0	-1149	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGATGGCTCAGCAGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	160022784	160028591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_160022882_160024515_160024675_160026997
ENSMUST00000135707.8	chr7	-	945	7	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-518	-561	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACCATCACATTTGACTT	NA	NA	NA	NA	NA	NA	NA	NA	126397454	126395083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397367
ENSMUST00000135717.2	chr2	+	531	3	ISM	ENSMUSG00000033059.8	ENSMUST00000045441.8	3909	20	41653	1124	41653	-1124	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGGGAATGGTTTTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	150670307	150672554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_150670499_150671547_150671615_150672281
ENSMUST00000135743.2	chr6	+	145	2	ISM	ENSMUSG00000038871.6	ENSMUST00000045372.6	2220	3	149	18246	149	-18246	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATACTAAGACATGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	34453290	34464302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_34453358_34464224
ENSMUST00000135822.8	chr10	-	497	3	NNC	ENSMUSG00000020027.19	novel	2153	3	NA	NA	-323	-394	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTAACTATATCCGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	95253042	95248871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_95248973_95250692_95251054_95253007
ENSMUST00000135857.2	chr11	-	397	2	FSM	ENSMUSG00000085033.2	ENSMUST00000135857.2	397	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTGTGGCCCAGGTTGG	NA	NA	NA	NA	NA	NA	NA	NA	105942678	105941976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_105942192_105942496
ENSMUST00000135941.8	chr1	+	662	4	FSM	ENSMUSG00000006412.11	ENSMUST00000135941.8	1735	4	60	1013	60	-1013	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTAATAATCTTAGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	171173297	171185809	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185417
ENSMUST00000135956.3	chr5	-	1383	5	ISM	ENSMUSG00000029469.15	ENSMUST00000031426.14	2950	19	53677	4	53677	-4	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGTTCTCTTTTTACTT	NA	NA	NA	NA	NA	NA	NA	NA	122698904	122688270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_122689267_122693559_122693606_122697217_122697304_122697759_122697832_122698721
ENSMUST00000136120.2	chr1	-	584	2	NNC	ENSMUSG00000040181.15	novel	1561	8	NA	NA	29496	194	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTGTTCACTTAAAATGT	NA	NA	NA	NA	NA	NA	NA	NA	162658042	162657335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_-_162657884_162658006
ENSMUST00000136328.2	chr11	+	1403	4	FSM	ENSMUSG00000040938.17	ENSMUST00000136328.2	1403	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAGAGTTCCATTAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	70104944	70107243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_70105091_70105330_70105539_70106109_70106878_70106962
ENSMUST00000136356.2	chr8	-	787	2	ISM	ENSMUSG00000014470.5	ENSMUST00000014614.4	1783	6	8022	382	8022	-382	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGCCAGGGCTTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	123194781	123193267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123193974_123194700
ENSMUST00000136449.2	chr2	+	437	4	ISM	ENSMUSG00000039263.17	ENSMUST00000044415.16	2467	12	1224	6967	1224	-6967	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACACCCCTGATGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	173953365	173957896	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_173953578_173955689_173955780_173956189_173956272_173957843
ENSMUST00000136449.2-0	chr2	+	517	4	ISM	ENSMUSG00000039263.17	ENSMUST00000044415.16	2467	12	1224	6887	1224	-6887	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGGAAAGGTAAGATGTG	NA	NA	NA	NA	NA	NA	NA	NA	173953365	173957976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_173953578_173955689_173955780_173956189_173956272_173957843
ENSMUST00000136465.8	chr19	+	427	4	FSM	ENSMUSG00000060675.14	ENSMUST00000136465.8	3048	4	26	2595	0	-2595	multi-exon	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGCAGGAGGTGCTCTAC	NA	NA	NA	NA	NA	NA	NA	NA	7534849	7556498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_7534930_7535296_7535361_7552301_7552405_7556318
ENSMUST00000136466.8	chr4	-	861	7	NNC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	3034	-205	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGCAAGCTGTGTAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	123030691	123021112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030593
ENSMUST00000136501.2	chr6	+	527	4	FSM	ENSMUSG00000045160.15	ENSMUST00000136501.2	2312	4	45	1740	45	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTGCCATGCTTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	83326472	83335378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_83326537_83328247_83328372_83330023_83330113_83335128
ENSMUST00000136516.9	chr8	+	601	3	FSM	ENSMUSG00000052446.18	ENSMUST00000136516.9	601	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCCTTAGGGAACATAAA	NA	NA	NA	NA	NA	NA	NA	NA	72704910	72722122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_72705005_72719637_72719765_72721742
ENSMUST00000136579.3	chr19	-	734	6	FSM	ENSMUSG00000024914.17	ENSMUST00000136579.3	734	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTTCTTAAATTTATTAAA	NA	NA	NA	NA	NA	NA	NA	NA	5474542	5472870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5473054_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388
ENSMUST00000136628.2	chr2	+	471	2	FSM	ENSMUSG00000074754.5	ENSMUST00000136628.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCAGTGTCTTCTTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	144435973	144437286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_144436126_144436967
ENSMUST00000136629.2	chr5	+	593	4	ISM	ENSMUSG00000029504.6	ENSMUST00000031478.6	4846	15	95	5563	95	-5563	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTACCAACCTAGTGACCT	NA	NA	NA	NA	NA	NA	NA	NA	110801411	110802799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_110801655_110801743_110801878_110802333_110802485_110802734
ENSMUST00000136652.8	chr7	-	756	5	NNC	ENSMUSG00000030615.13	novel	799	5	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	460	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGCAACATTAAAATACTT	NA	NA	NA	NA	NA	NA	NA	NA	90106416	90099907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_90100144_90100750_90100866_90101936_90102109_90104631_90104728_90106279
ENSMUST00000136687.9	chr7	+	913	9	ISM	ENSMUSG00000030890.17	ENSMUST00000163389.9	1749	13	398	1105	25	-1070	internal_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCTTTGGACATGGCAA	NA	NA	NA	NA	NA	NA	NA	NA	105386329	105391024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993
ENSMUST00000136690.3	chr12	-	1063	3	FSM	ENSMUSG00000085622.10	ENSMUST00000136690.3	1063	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTTCATAGATTCCATT	NA	NA	NA	NA	NA	NA	NA	NA	71062606	71056568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_71057254_71061229_71061282_71062280
ENSMUST00000136776.8	chr16	-	2041	14	FSM	ENSMUSG00000003526.13	ENSMUST00000136776.8	2041	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACCTTTCTCTTGGTACC	NA	NA	NA	NA	NA	NA	NA	NA	17908067	17889589	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895654_17895748_17897050_17897133_17897775_17897856_17898029_17898147_17898326_17898392_17898789_17898940_17899394_17899430_17902410_17902620_17908006
ENSMUST00000136826.3	chr14	-	1446	14	NIC	ENSMUSG00000042567.21	novel	2177	14	NA	NA	0	50	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCTTCAACTGTGACATG	NA	NA	NA	NA	NA	NA	NA	NA	7539188	7463019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_7463119_7468562_7468619_7468698_7468752_7470570_7470680_7482985_7483097_7489147_7489249_7500027_7500166_7500250_7500289_7512157_7512213_7513905_7513993_7514084_7514269_7531975_7532190_7538442_7538514_7539058
ENSMUST00000136838.8	chr2	-	884	3	ISM	ENSMUSG00000027327.17	ENSMUST00000103188.10	1241	6	11756	-1	11756	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTCAGAGGTTAGCGGGG	NA	NA	NA	NA	NA	NA	NA	NA	130990184	130988243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_130988896_130989080_130989204_130990075
ENSMUST00000136839.2	chr2	+	452	4	FSM	ENSMUSG00000052033.14	ENSMUST00000136839.2	452	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATTTCCCTTCTCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	170353364	170360782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_170353390_170357658_170357767_170358481_170358611_170360592
ENSMUST00000136871.2	chr9	+	756	5	ISM	ENSMUSG00000034593.17	ENSMUST00000155282.9	6372	41	0	88525	0	-88525	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTCTGCTAAGTATGCCA	NA	NA	NA	NA	NA	NA	NA	NA	74978667	75037307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_74978942_75023467_75023579_75027954_75028127_75030192_75030338_75037253
ENSMUST00000136872.8	chr2	+	1287	13	FSM	ENSMUSG00000027282.18	ENSMUST00000136872.8	2596	13	76	1233	0	-1063	multi-exon	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGTCAAATGAAGAATAGAA	NA	NA	NA	NA	NA	NA	NA	NA	90677574	90695921	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUST00000136872.8-1	chr2	+	1291	13	FSM	ENSMUSG00000027282.18	ENSMUST00000136872.8	2596	13	132	1173	14	-1003	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGCATACCATGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	90677630	90695981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUST00000136893.3	chr11	+	311	1	FSM	ENSMUSG00000024205.8	ENSMUST00000136893.3	311	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	454	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCTCCCCCAATAAAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	76492144	76492455	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_76492100_76492500
ENSMUST00000136914.8	chr11	-	1336	5	FSM	ENSMUSG00000034120.19	ENSMUST00000190993.7	1326	5	0	-10	0	10	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAATGTTAAGGAAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	116743898	116740869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_116741180_116741681_116741788_116742473_116742578_116742846_116743158_116743393
ENSMUST00000136936.2	chr11	-	953	3	NNC	ENSMUSG00000015837.16	novel	2037	8	NA	NA	7811	-15	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	419	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCACTTTAACCAGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	50093781	50090993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_50091775_50093225_50093257_50093640
ENSMUST00000136952.2	chr2	-	249	3	NIC	ENSMUSG00000026939.13	novel	795	5	NA	NA	34	12	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCTAGCAGTTTCAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	25511983	25511058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_25511186_25511386_25511471_25511945
ENSMUST00000137013.2	chr5	+	333	1	FSM	ENSMUSG00000093885.3	ENSMUST00000137013.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	33233381	33233714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_33233400_33233700
ENSMUST00000137023.2	chr12	-	1630	3	ISM	ENSMUSG00000021265.4	ENSMUST00000021693.4	1976	4	4645	112	4645	-112	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTGGCACCAGCACAGAG	NA	NA	NA	NA	NA	NA	NA	NA	108797164	108791910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_108793415_108793599_108793684_108797122
ENSMUST00000137103.8	chr11	-	757	6	NNC	ENSMUSG00000000753.16	novel	1832	8	NA	NA	-3	549	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGGCTTCCCCACTTGT	NA	NA	NA	NA	NA	NA	NA	NA	75313381	75305746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_75305951_75306400_75306557_75307055_75307255_75308734_75308823_75309222_75309273_75313321
ENSMUST00000137116.3	chr15	+	1901	3	FSM	ENSMUSG00000022313.11	ENSMUST00000137116.3	2921	3	76	944	0	-944	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGAGACCTAGAGACCAGA	NA	NA	NA	NA	NA	NA	NA	NA	51740900	51747066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_51741107_51744411_51744587_51745546
ENSMUST00000137124.3	chr11	-	933	7	FSM	ENSMUSG00000086962.5	ENSMUST00000137124.3	933	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCACTTTGACCATCTGG	NA	NA	NA	NA	NA	NA	NA	NA	57963742	57954648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_57954803_57956421_57956589_57956871_57956978_57957381_57957588_57961174_57961297_57963291_57963396_57963668
ENSMUST00000137125.2	chr11	-	490	4	ISM	ENSMUSG00000020282.19	ENSMUST00000020524.15	2946	18	11030	814	3165	-592	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAGATGTTTCCCAGGGT	NA	NA	NA	NA	NA	NA	NA	NA	32161270	32160398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_32160552_32160657_32160759_32160826_32160903_32161110
ENSMUST00000137167.8	chr5	+	1049	8	FSM	ENSMUSG00000041939.15	ENSMUST00000137167.8	1049	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGGCTGTCTGTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	114582329	114591211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_114582425_114582712_114582751_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940
ENSMUST00000137236.2	chr4	+	1970	3	FSM	ENSMUSG00000085334.8	ENSMUST00000137236.2	1970	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCTTAGGTACTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	126929473	126943191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_126929648_126930355_126930443_126941482
ENSMUST00000137318.2	chr6	-	424	2	ISM	ENSMUSG00000072772.4	ENSMUST00000004389.6	863	3	659	4	659	-4	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACCTTTGTGTCAGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	124717678	124716149	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124716377_124717481
ENSMUST00000137318.2-0	chr6	-	330	2	ISM	ENSMUSG00000072772.4	ENSMUST00000004389.6	863	3	679	78	679	-78	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	288	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGTTCTCGTATGTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	124717658	124716223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124716377_124717481
ENSMUST00000137420.2	chr16	-	535	3	ISM	ENSMUSG00000052516.20	ENST00000332191.12	4984	25	139933	2261	139933	-2261	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAGTTTACAGGTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	73703887	73693917	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_73694096_73701270_73701445_73703704
ENSMUST00000137446.8	chr2	+	2274	17	ISM	ENSMUSG00000068040.11	ENSMUST00000089027.3	3896	18	0	5604	0	-5604	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCTCAGCATTGTAATCT	NA	NA	NA	NA	NA	NA	NA	NA	153003222	153046782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454
ENSMUST00000137467.8	chrX	+	3390	10	FSM	ENSMUSG00000000134.18	ENSMUST00000137467.8	3390	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	7628933	7641438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_7629453_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ENSMUST00000137510.8	chr11	+	1287	3	FSM	ENSMUSG00000083844.9	ENSMUST00000137510.8	1846	3	21	538	0	-538	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGGAGGGATATCTACA	NA	NA	NA	NA	NA	NA	NA	NA	5712149	5731338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_5712241_5715508_5715572_5730205
ENSMUST00000137579.6	chr19	+	741	4	FSM	ENSMUSG00000024845.20	ENSMUST00000137579.6	741	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACAGTTGCACTTTCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	4175959	4181731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_4176200_4177055_4177132_4181227_4181282_4181360
ENSMUST00000137585.3	chr2	+	554	5	ISM	ENSMUSG00000014077.14	ENSMUST00000014221.13	2609	7	18908	1806	18884	-1794	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCACCCCATCCTGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	119397085	119415702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_119397212_119402248_119402377_119411175_119411238_119415010_119415134_119415587
ENSMUST00000137621.8	chr6	+	556	6	ISM	ENSMUSG00000025609.16	ENSMUST00000026699.15	11395	18	124	83825	124	-83825	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAACTATACAGAGGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	31375793	31409921	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873
ENSMUST00000137627.2	chr7	-	1917	5	ISM	ENSMUSG00000037606.19	ENST00000525498.5	2546	19	15293	-795	15293	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTTTTGGGGGAATCC	NA	NA	NA	NA	NA	NA	NA	NA	143248298	143242498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143243695_143245624_143245728_143246594_143246722_143247508_143247636_143247934
ENSMUST00000137698.2	chr15	+	198	2	ISM	ENSMUSG00000068391.9	ENSMUST00000089765.9	871	3	20	1217	20	-1217	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTCCTACAGACACGGAA	NA	NA	NA	NA	NA	NA	NA	NA	72962260	72964707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_72962433_72964681
ENSMUST00000137741.2	chr2	+	702	2	ISM	ENSMUSG00000039515.12	ENSMUST00000136009.3	810	3	484	-93	484	93	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTTGGGAGGGCTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	30333230	30336911	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_30333410_30336388
ENSMUST00000137747.2	chr10	-	463	3	NNC	ENSMUSG00000025350.16	novel	1258	5	NA	NA	396	-124	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATGCCAAGCTGCTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	128753921	128749685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_128749812_128750003_128750168_128753748
ENSMUST00000137752.2	chr4	-	2490	3	FSM	ENSMUSG00000086682.2	ENSMUST00000137752.2	2490	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTCTCTCTCTCTCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	155709212	155692756	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_155694749_155694870_155694972_155708815
ENSMUST00000137811.8	chr16	+	405	5	ISM	ENSMUSG00000098274.8	ENSMUST00000023269.5	677	6	272	108	272	-108	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCTAAACAAAAGATTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	55786909	55791690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
ENSMUST00000137893.2	chr2	+	1707	2	ISM	ENSMUSG00000027589.15	ENSMUST00000108754.8	3499	7	13650	949	9171	-535	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTGGTTCTTTTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	181493355	181498290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_181493503_181496730
ENSMUST00000137929.2	chr2	+	1557	1	Genic_Genomic	ENSMUSG00000083674.4	novel	NA	NA	NA	NA	716	7	mono-exon	FALSE	NA	NA	NA	NA	NA	1979	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGCAAACGGTGGGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	144307095	144308652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr2_+_144307100_144308700
ENSMUST00000137951.2	chr11	+	476	3	ISM	ENSMUSG00000020782.19	ENST00000577200.5	2863	20	18458	76	18458	-76	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCGCTTTTCTCTCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	115744077	115745046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_115744261_115744542_115744808_115745018
ENSMUST00000138007.2	chr11	+	848	2	FSM	ENSMUSG00000087574.2	ENSMUST00000138007.2	3220	2	0	2372	0	-2372	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATCAGAGCTAGAAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	88609470	88611054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_88609844_88610579
ENSMUST00000138247.8	chr11	+	2247	7	FSM	ENSMUSG00000020794.14	ENSMUST00000138247.8	3931	7	36	1648	36	-1648	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGACATAGTGCACTTAGA	NA	NA	NA	NA	NA	NA	NA	NA	72498144	72575659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_72498462_72536362_72536479_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
ENSMUST00000138280.8	chr1	+	1950	6	FSM	ENSMUSG00000026240.13	ENST00000620578.4	2492	6	51	491	31	-174	multi-exon	FALSE	canonical	NA	NA	NA	NA	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTAGGTGTGGAGGATT	NA	NA	NA	NA	NA	NA	NA	NA	86514852	86534048	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_86514958_86516885_86517064_86524472_86524562_86526724_86526928_86528804_86528911_86532779
ENSMUST00000138280.8-0	chr1	+	2472	6	FSM	ENSMUSG00000026240.13	ENST00000620578.4	2492	6	20	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCATTCCATATCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	86514821	86534539	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_86514958_86516885_86517064_86524472_86524562_86526724_86526928_86528804_86528911_86532779
ENSMUST00000138302.9	chr19	+	1382	4	FSM	ENSMUSG00000047731.18	ENSMUST00000138302.9	3900	4	0	2518	0	-2511	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATTCAGGGTGTGGATGC	NA	NA	NA	NA	NA	NA	NA	NA	46587522	46643310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_46587733_46632791_46632895_46640912_46641075_46642403
ENSMUST00000138401.2	chr13	-	768	5	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	7853	1070	7853	-1070	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	194	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTTCTTTATTGTAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	47251813	47239327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630
ENSMUST00000138426.2	chr4	+	751	2	FSM	ENSMUSG00000087299.2	ENSMUST00000138426.2	751	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAGCTTTACAGGATAAG	NA	NA	NA	NA	NA	NA	NA	NA	116408936	116409824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_116409545_116409681
ENSMUST00000138437.3	chrX	+	670	3	FSM	ENSMUSG00000042903.9	ENST00000341558.3	1345	3	0	675	0	-675	multi-exon	FALSE	canonical	NA	NA	NA	NA	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTGCTAGCAGAAGAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	100298426	100302164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_100298598_100298762_100298880_100301782
ENSMUST00000138576.2	chr2	+	374	2	ISM	ENSMUSG00000027208.15	ENSMUST00000064794.14	2672	4	0	55560	0	-53936	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGGAGGCCCATGACCTA	NA	NA	NA	NA	NA	NA	NA	NA	125876577	125877545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_125876771_125877364
ENSMUST00000138658.9	chr11	-	516	5	NNC	ENSMUSG00000020831.19	novel	779	5	NA	NA	41	-17	at_least_one_novel_splicesite	FALSE	non_canonical	NA	NA	NA	NA	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCCTGGACCTGTGGATC	NA	NA	NA	NA	NA	NA	NA	NA	70128589	70126204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_70126295_70126849_70127038_70127713_70127805_70128356_70128452_70128537
ENSMUST00000138666.8	chr2	+	534	7	FSM	ENSMUSG00000052533.15	ENSMUST00000138666.8	534	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTGTTTCTTGTGTATA	NA	NA	NA	NA	NA	NA	NA	NA	30176435	30193822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_30176483_30186659_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192016_30192058_30193671
ENSMUST00000138679.2	chr2	+	1302	1	FSM	ENSMUSG00000064193.9	ENSMUST00000138679.2	1302	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCATGGACCGGAGATC	NA	NA	NA	NA	NA	NA	NA	NA	80667484	80668786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_80667500_80668800
ENSMUST00000138699.8	chr5	+	484	4	ISM	ENSMUSG00000029233.16	ENSMUST00000031143.13	1747	6	35	5665	35	-4968	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCTTTGAGTGCTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	76288152	76297661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_76288396_76295532_76295676_76297049_76297086_76297599
ENSMUST00000138702.2	chr11	+	534	2	FSM	ENSMUSG00000086442.2	ENSMUST00000138702.2	534	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAATGGCCTACATAG	NA	NA	NA	NA	NA	NA	NA	NA	107372741	107373933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_107373179_107373836
ENSMUST00000138759.8	chr17	-	1074	8	FSM	ENSMUSG00000061046.10	ENSMUST00000138759.8	1074	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTGGTACCAGACACAC	NA	NA	NA	NA	NA	NA	NA	NA	26004541	26001796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26004401
ENSMUST00000138833.8	chr2	+	782	5	ISM	ENSMUSG00000001864.14	ENSMUST00000001920.13	3117	6	378	2104	168	106	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGATCCAGAGCAGGCACA	NA	NA	NA	NA	NA	NA	NA	NA	31840528	31861350	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_31840603_31852226_31852294_31855082_31855125_31859641_31859805_31860914
ENSMUST00000138866.2	chr18	+	595	8	NNC	ENSMUSG00000024410.16	novel	1923	18	NA	NA	11737	-1745	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCAGAGCCGGAGCAACCC	NA	NA	NA	NA	NA	NA	NA	NA	12313581	12321277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr18_+_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317968_12318078_12318705_12318813_12321265
ENSMUST00000138880.9	chr15	+	2192	6	FSM	ENSMUSG00000033099.11	ENSMUST00000138880.9	3721	6	62	1467	62	-1467	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGCTGGGAAAGCCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	78819194	78826371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_78819276_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
ENSMUST00000138897.2	chr19	-	1335	3	ISM	ENSMUSG00000034659.15	ENSMUST00000038128.15	2188	4	7514	504	7514	-504	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	844	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGCTGTGGCTACTTCG	NA	NA	NA	NA	NA	NA	NA	NA	10851851	10848527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_10849514_10849950_10850054_10851605
ENSMUST00000138998.2	chr11	+	530	5	ISM	ENSMUSG00000020739.12	ENSMUST00000021085.11	2230	19	17314	202	17314	-202	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGGCAATTATAAGGGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	115472573	115474609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
ENSMUST00000139046.8	chr9	-	1419	7	NIC	ENSMUSG00000032366.16	novel	1714	8	NA	NA	24	-7	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAACGCACATTTAGG	NA	NA	NA	NA	NA	NA	NA	NA	66951060	66929903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66950859
ENSMUST00000139049.2	chr12	+	712	2	FSM	ENSMUSG00000079104.5	ENSMUST00000139049.2	1720	2	79	929	79	-441	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGACCTCCATTGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	57277276	57285739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_57277398_57285148
ENSMUST00000139122.8	chr5	-	2398	5	FSM	ENSMUSG00000037822.13	ENSMUST00000139122.8	4560	5	0	2162	0	797	multi-exon	FALSE	canonical	NA	NA	NA	NA	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATATAACCACCTCTTAG	NA	NA	NA	NA	NA	NA	NA	NA	65650743	65606348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650078
ENSMUST00000139129.9	chr11	+	2482	4	FSM	ENSMUSG00000018379.18	ENSMUST00000139129.9	5362	4	352	2528	7	-263	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGATGGAATTGTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	87938550	87942053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_87938859_87939315_87939501_87939868_87940042_87940237
ENSMUST00000139156.8	chr6	+	1280	10	NNC	ENSMUSG00000061758.14	novel	1371	10	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	119	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACATTTTCAACTGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	34361215	34373882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_+_34361343_34364606_34364775_34365710_34365828_34367014_34367068_34368951_34369075_34369323_34369431_34369849_34369932_34370992_34371077_34371661_34371745_34373546
ENSMUST00000139165.2	chr8	+	399	1	FSM	ENSMUSG00000069862.7	ENSMUST00000139165.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATTTTGGCTGAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	123933361	123933760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_123933400_123933800
ENSMUST00000139167.3	chr5	-	1797	3	FSM	ENSMUSG00000029536.9	ENSMUST00000139167.3	1797	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	310	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGCTGATTTTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	115479237	115471297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_115472654_115473525_115473630_115478900
ENSMUST00000139218.2	chr7	+	2330	5	FSM	ENSMUSG00000086742.9	ENSMUST00000139218.2	2330	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAGTGTTTAGTCATAAT	NA	NA	NA	NA	NA	NA	NA	NA	139530352	139558890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_139530391_139542712_139542800_139555217_139555324_139556403_139556522_139556909
ENSMUST00000139231.2	chr6	-	2075	3	FSM	ENSMUSG00000052419.8	ENSMUST00000139231.2	3177	3	53	1049	0	1016	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACAGGAAAACAGTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	13871464	13868782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_13870740_13871054_13871146_13871437
ENSMUST00000139233.2	chr7	+	573	2	ISM	ENSMUSG00000030685.6	ENSMUST00000032924.6	1676	6	13265	373	13265	-373	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATCACCACTCACTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	126541315	126544430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_126541515_126544056
ENSMUST00000139240.2	chr6	+	394	5	ISM	ENSMUSG00000034083.17	ENST00000303688.8	1190	9	-66	11517	22	-11517	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTACCTTGTGGATTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	91855055	91865067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_91855168_91857237_91857343_91858227_91858329_91862328_91862388_91865050
ENSMUST00000139244.2	chr1	-	323	2	ISM	ENSMUSG00000052748.15	ENSMUST00000064771.12	3688	20	43939	11693	43939	-11693	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCAAAGGTAACCATTGT	NA	NA	NA	NA	NA	NA	NA	NA	151260267	151255142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_151255266_151260067
ENSMUST00000139253.8	chr2	+	747	3	FSM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	0	2309	0	57	multi-exon	FALSE	canonical	NA	NA	NA	NA	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTCCCCACTAAAAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	121279675	121281592	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_121279923_121280455_121280565_121281201
ENSMUST00000139253.8-1	chr2	+	738	3	FSM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	188	2130	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCCCCACACCGACCTT	NA	NA	NA	NA	NA	NA	NA	NA	121279863	121281771	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_121279923_121280455_121280565_121281201
ENSMUST00000139271.2	chr11	-	600	6	FSM	ENSMUSG00000087060.8	ENSMUST00000139271.2	600	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGAACAGCTAAACAGGG	NA	NA	NA	NA	NA	NA	NA	NA	16901082	16885701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_16885927_16886454_16886565_16887372_16887485_16888584_16888626_16900881_16900931_16901019
ENSMUST00000139402.3	chr5	-	525	4	ISM	ENSMUSG00000029201.15	ENSMUST00000031103.14	2550	12	13143	4297	13143	-4297	internal_fragment	FALSE	canonical	NA	NA	NA	NA	256	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAAGGTAGGGTTGACTC	NA	NA	NA	NA	NA	NA	NA	NA	65580149	65574860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_65574988_65575820_65575952_65577591_65577687_65579977
ENSMUST00000139430.2	chr11	-	608	3	ISM	ENSMUSG00000020457.14	ENSMUST00000020741.12	1546	9	13534	190	13534	-190	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	249	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCAGGCTGGCTTTGAAC	NA	NA	NA	NA	NA	NA	NA	NA	3202859	3200096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_3200366_3202159_3202283_3202643
ENSMUST00000139486.2	chr10	+	506	5	FSM	ENSMUSG00000006732.15	ENST00000257848.7	615	5	0	109	0	-109	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGGAAGGAAAGAAAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	126877851	126881185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_126877940_126878928_126879093_126880624_126880739_126880894_126880997_126881147
ENSMUST00000139517.9	chr15	+	2997	22	FSM	ENSMUSG00000042303.20	ENSMUST00000139517.9	2997	22	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTTGTTTTATTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	80861965	80896491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_80862067_80886769_80886866_80887560_80887647_80888004_80888072_80890607_80890814_80890906_80891015_80891647_80891792_80892051_80892248_80892489_80892636_80892884_80893110_80893424_80893480_80893607_80893736_80893834_80893991_80894141_80894197_80894429_80894480_80894610_80894764_80894917_80894989_80895061_80895111_80895186_80895273_80895438_80895562_80895662_80895724_80895856
ENSMUST00000139520.3	chr5	-	436	6	NNC	ENSMUSG00000050640.17	novel	3084	8	NA	NA	527	-2503	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTCCTCTGGCATTTCT	NA	NA	NA	NA	NA	NA	NA	NA	100307140	100233985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_100234114_100240625_100240694_100240793_100240827_100240917_100240972_100243465_100243556_100307077
ENSMUST00000139585.8	chr2	+	1418	9	FSM	ENSMUSG00000016458.16	ENST00000332351.9	2959	9	616	925	413	337	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTCCCCAGGATTAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	104957554	105003026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_104957788_104963282_104963406_104963746_104963850_104973429_104973508_104993669_104993767_104997162_104997314_104999378_104999469_105000270_105000355_105002567
ENSMUST00000139585.8-0	chr2	+	1781	9	FSM	ENSMUSG00000016458.16	ENST00000332351.9	2959	9	407	771	204	491	multi-exon	TRUE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAATCGTGCAGAATTTC	NA	NA	NA	NA	NA	NA	NA	NA	104957345	105003180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_104957788_104963282_104963406_104963746_104963850_104973429_104973508_104993669_104993767_104997162_104997314_104999378_104999469_105000270_105000355_105002567
ENSMUST00000139685.8	chr4	+	2051	4	FSM	ENSMUSG00000028936.16	ENSMUST00000139685.8	2051	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCACTGTGCAAGGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	152410323	152418528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
ENSMUST00000139689.8	chr2	-	722	7	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	1689	2	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGGATAGTGGAGCTAGG	NA	NA	NA	NA	NA	NA	NA	NA	59707186	59691904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010
ENSMUST00000139743.8	chr10	-	679	5	FSM	ENSMUSG00000051736.9	ENSMUST00000139743.8	679	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGGTTGACTCTTCCAT	NA	NA	NA	NA	NA	NA	NA	NA	39009896	38994803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_38995031_38996253_38996393_38998172_38998332_39008242_39008375_39009874
ENSMUST00000139785.2	chr3	-	908	2	ISM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	9536	1568	9460	541	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	220	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCAGGCTTTCGCACCAC	NA	NA	NA	NA	NA	NA	NA	NA	65290508	65288643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_65289456_65290412
ENSMUST00000139846.2	chr11	+	257	3	ISM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	823	747	823	-747	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGTTTTAAGTGCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	100211533	100212175	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_100211656_100211773_100211876_100212142
ENSMUST00000139870.2	chr9	-	379	2	NNC	ENSMUSG00000032508.9	novel	874	4	NA	NA	-1337	-2337	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGCTGGCCTTGTTAGA	NA	NA	NA	NA	NA	NA	NA	NA	119170477	119168755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_-_119169068_119170410
ENSMUST00000139906.2	chr11	-	1764	4	NIC	ENSMUSG00000050541.15	novel	3331	5	NA	NA	0	-1417	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGACTCCGGGCCACTCTT	NA	NA	NA	NA	NA	NA	NA	NA	43792037	43666849	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_43667287_43725966_43727109_43727619_43727688_43791920
ENSMUST00000139987.10	chr19	+	999	7	FSM	ENSMUSG00000024845.20	ENSMUST00000139987.10	1488	7	0	489	0	84	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACCCACCTAGAGCTCTA	NA	NA	NA	NA	NA	NA	NA	NA	4175959	4181815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_4176200_4177055_4177121_4177575_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
ENSMUST00000140029.2	chr9	-	654	4	ISM	ENSMUSG00000023249.16	ENSMUST00000112479.9	2030	11	73	3640	73	-3640	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCATCCTCCAGTCCCAT	NA	NA	NA	NA	NA	NA	NA	NA	106353795	106351827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_106352068_106352221_106352348_106352997_106353182_106353691
ENSMUST00000140076.2	chr5	-	2532	11	FSM	ENSMUSG00000029246.15	ENSMUST00000140076.2	3981	11	247	1202	247	-1202	multi-exon	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTTTGCAGTCCTTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	77099178	77062324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
ENSMUST00000140111.8	chr8	+	1580	6	FSM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	0	2429	0	-2429	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCTGCATCATGCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	20016465	20053069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811_20042185_20052877
ENSMUST00000140131.8	chr6	+	1446	8	FSM	ENSMUSG00000030330.16	ENSMUST00000140131.8	1446	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTTTATTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	125016722	125025965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024441_125024551_125024755_125024904_125025138_125025201_125025330
ENSMUST00000140134.2	chr17	+	744	3	FSM	ENSMUSG00000047786.13	ENSMUST00000140134.2	2678	3	51	1883	51	-1883	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTCTGTTCACAGAATGG	NA	NA	NA	NA	NA	NA	NA	NA	17669132	17677766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_17669400_17674521_17674600_17677367
ENSMUST00000140159.2	chr5	+	769	4	ISM	ENSMUSG00000041827.16	ENST00000339275.10	1377	5	141	1316	-10	-1316	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAATGAATGGTTCCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	115061493	115074126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_115061669_115066081_115066365_115067898_115068063_115073979
ENSMUST00000140171.8	chr15	-	537	4	NNC	ENSMUSG00000052560.16	novel	697	4	NA	NA	29950	-3	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGAAGATTCTGGTTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	90533641	90527531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_-_90527917_90532780_90532828_90533445_90533487_90533577
ENSMUST00000140173.8	chr2	+	925	7	ISM	ENSMUSG00000027168.22	ENST00000481563.6	1504	10	117	3224	117	-804	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACTAGCAGCCAAAATAG	NA	NA	NA	NA	NA	NA	NA	NA	105512807	105522578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_105512979_105514172_105514304_105515095_105515138_105515231_105515448_105516122_105516289_105521909_105522069_105522538
ENSMUST00000140267.10	chr19	+	938	7	FSM	ENSMUSG00000024845.20	ENSMUST00000140267.10	938	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	NA	NA	NA	NA	NA	NA	NA	NA	4175958	4181726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
ENSMUST00000140273.2	chr11	+	1657	2	FSM	ENSMUSG00000085636.2	ENSMUST00000140273.2	1657	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAAAGGAAAAGCTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	120041387	120043167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_120041541_120041663
ENSMUST00000140337.2	chr7	-	1024	2	ISM	ENSMUSG00000051007.16	ENSMUST00000106008.3	1898	8	4805	390	4738	-390	intron_retention	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTGTTGTTGTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	140989244	140988096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_140988878_140989001
ENSMUST00000140338.2	chr2	-	130	2	ISM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	3444	501	3444	-501	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTATTATTTGGCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	132091790	132091582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_132091616_132091693
ENSMUST00000140348.8	chr3	-	695	6	NIC	ENSMUSG00000005625.16	novel	1276	10	NA	NA	7276	1	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTTTTGCTTCAAATAGT	NA	NA	NA	NA	NA	NA	NA	NA	94942578	94940014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_94940296_94940792_94940858_94940943_94941076_94941219_94941338_94942252_94942322_94942548
ENSMUST00000140362.8	chr11	-	568	5	NNC	ENSMUSG00000018362.15	novel	2074	11	NA	NA	590	-3289	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATCTCCTCATGCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	106889605	106882743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106889571
ENSMUST00000140405.10	chr19	+	874	6	NIC	ENSMUSG00000024845.20	novel	1112	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	NA	NA	NA	NA	NA	NA	NA	NA	4175988	4181726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181227_4181282_4181360
ENSMUST00000140423.2	chr6	-	395	2	ISM	ENSMUSG00000072772.4	ENSMUST00000004389.6	863	3	88	1485	88	-1485	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGGCCCCAGAGAATGCCG	NA	NA	NA	NA	NA	NA	NA	NA	124718249	124717630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124717659_124717882
ENSMUST00000140483.2	chr16	-	432	2	NNC	ENSMUSG00000048490.15	novel	7651	3	NA	NA	49391	-3784	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGATGTGCATCAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	76120546	76091533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr16_-_76091904_76120484
ENSMUST00000140507.2	chr2	+	579	1	FSM	ENSMUSG00000047965.10	ENSMUST00000140507.2	579	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	958	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGCCTCAGATTTTACAT	NA	NA	NA	NA	NA	NA	NA	NA	70289325	70289904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_70289300_70289900
ENSMUST00000140575.8	chrX	+	788	4	FSM	ENSMUSG00000086316.9	ENSMUST00000140575.8	788	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATGTCCAAATAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	152506585	152524260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_152506934_152508700_152508838_152511857_152511936_152524035
ENSMUST00000140592.8	chr2	+	216	3	FSM	ENSMUSG00000026810.13	ENSMUST00000140592.8	1412	3	9	1187	9	-1187	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTGCTGCTCCTATTTG	NA	NA	NA	NA	NA	NA	NA	NA	32460878	32462388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_32460925_32461217_32461308_32462308
ENSMUST00000140653.2	chr5	-	424	2	FSM	ENSMUSG00000029190.20	ENSMUST00000140653.2	2014	2	87	1503	0	-1503	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTGACATGTCGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	36853281	36830245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_36830587_36853198
ENSMUST00000140687.2	chr7	-	625	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3769	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCTCATGTGTAGTGTAA	NA	NA	NA	NA	NA	NA	NA	NA	92828852	92828227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_92828200_92828900
ENSMUST00000140785.2	chr2	-	612	5	NNC	ENSMUSG00000015087.15	novel	3230	15	NA	NA	65	-13470	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGTACAAGAACTGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	25498468	25486499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_-_25486537_25488156_25488210_25491362_25491411_25492432_25492563_25498124
ENSMUST00000140790.2	chr12	+	370	4	ISM	ENSMUSG00000056899.11	ENSMUST00000132121.8	1147	7	0	841429	0	0	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTAACTCAGTAACTTA	NA	NA	NA	NA	NA	NA	NA	NA	41074088	41160942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_41074145_41074559_41074633_41118308_41118446_41160838
ENSMUST00000140840.8	chr15	+	1307	4	FSM	ENSMUSG00000022269.14	ENSMUST00000140840.8	1558	4	0	251	0	-251	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATTACATCTATTCAATC	NA	NA	NA	NA	NA	NA	NA	NA	26309149	26409411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_26309879_26311056_26311213_26387833_26388027_26409182
ENSMUST00000140850.8	chr8	-	545	2	NIC	ENSMUSG00000004996.10	novel	2819	5	NA	NA	-2	-4339	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGATCCCTGCAACTCTC	NA	NA	NA	NA	NA	NA	NA	NA	84983955	84980873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_84980982_84983518
ENSMUST00000140952.2	chr11	-	158	2	NNC	ENSMUSG00000085645.2	novel	240	2	NA	NA	1829	-43	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCCTCAGCGCCACCGCC	NA	NA	NA	NA	NA	NA	NA	NA	96195907	96184322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_96184381_96195807
ENSMUST00000140991.2	chr11	+	1141	11	FSM	ENSMUSG00000020755.10	ENSMUST00000140991.2	3654	11	392	2121	392	-2121	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACCTCTTGGGTTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	115824499	115855430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_115824608_115826191_115826302_115828835_115828884_115842792_115842836_115848186_115848276_115851325_115851418_115852181_115852243_115852564_115852617_115853319_115853379_115854768_115854854_115855036
ENSMUST00000140999.2	chr2	+	804	5	NNC	ENSMUSG00000009563.17	novel	1536	5	NA	NA	74	-345	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGCTGGCTCAGTTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	32647330	32651606	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_+_32647552_32648768_32648949_32649538_32649715_32650600_32650729_32651507
ENSMUST00000141013.8	chr4	+	419	4	ISM	ENSMUSG00000028618.12	ENSMUST00000030361.11	1775	8	327	10436	199	-10138	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTCTTCCCTCTGACTC	NA	NA	NA	NA	NA	NA	NA	NA	107035922	107047757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_107036115_107042974_107043081_107044815_107044911_107047731
ENSMUST00000141016.2	chr11	+	667	3	ISM	ENSMUSG00000052915.15	ENSMUST00000037930.13	1303	8	5617	-172	5617	172	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGGAGCAACCCTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	98695096	98696605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_98695253_98695672_98695746_98696167
ENSMUST00000141108.2	chr4	-	1125	8	ISM	ENSMUSG00000029060.18	ENST00000504599.6	2877	18	1770	2190	1770	-2190	internal_fragment	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAACGTGGTTGTGATGT	NA	NA	NA	NA	NA	NA	NA	NA	155744040	155741399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743350_155743459_155743579_155743723_155743844
ENSMUST00000141138.8	chr6	-	890	4	NNC	ENSMUSG00000030042.16	novel	1769	4	NA	NA	350	-615	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	167	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATGTGATATAAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	82629501	82624296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_82625018_82628417_82628460_82629063_82629149_82629459
ENSMUST00000141191.8	chr3	+	1469	10	NNC	ENSMUSG00000036632.10	novel	1471	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTGTCCTCTTCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	54642959	54657216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_+_54643071_54646202_54646373_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
ENSMUST00000141211.2	chrX	-	479	4	ISM	ENSMUSG00000031388.15	ENSMUST00000114389.10	1031	8	2017	217	1921	-172	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGTCGTGAGGAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	72963513	72960697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_72960893_72961448_72961534_72963107_72963153_72963359
ENSMUST00000141235.8	chr4	+	694	7	FSM	ENSMUSG00000057572.16	ENSMUST00000141235.8	3833	7	352	2787	35	149	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTTGTACTTGGTCATT	NA	NA	NA	NA	NA	NA	NA	NA	129229839	129240877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_129229933_129234520_129234546_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
ENSMUST00000141276.2	chr2	+	609	5	ISM	ENSMUSG00000034738.9	ENST00000397209.6	1276	13	34536	2	34536	-2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGACGTGTTCTCCAATA	NA	NA	NA	NA	NA	NA	NA	NA	69009648	69015892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_69009838_69011174_69011264_69013170_69013297_69014224_69014340_69015802
ENSMUST00000141434.2	chr6	-	244	2	ISM	ENSMUSG00000034312.16	ENST00000618604.4	3232	11	26847	363	26847	-363	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCACCCACCCTCAGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	90644981	90639793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_90639938_90644881
ENSMUST00000141470.2	chr2	-	338	2	ISM	ENSMUSG00000026966.7	ENSMUST00000028342.7	862	3	288	405	288	-405	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTAGTCCTCAACATGTC	NA	NA	NA	NA	NA	NA	NA	NA	25162140	25161455	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25161594_25161940
ENSMUST00000141474.8	chr11	-	325	3	ISM	ENSMUSG00000034566.11	ENSMUST00000180072.8	486	5	1584	-59	1584	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	NA	NA	NA	NA	NA	NA	NA	115307749	115306514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115306706_115306840_115306904_115307678
ENSMUST00000141493.8	chr4	+	541	3	FSM	ENSMUSG00000047613.11	ENSMUST00000105645.9	977	3	29	407	29	-407	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATCCTTCCATGAGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	154041722	154045968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_154041780_154044987_154045450_154045946
ENSMUST00000141530.2	chr11	-	640	7	NNC	ENSMUSG00000018593.14	novel	2115	10	NA	NA	0	-3831	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	632	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACCTTGTACGAGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	55310724	55290077	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298100_55300753_55300824_55310613
ENSMUST00000141531.8	chr11	-	832	4	ISM	ENSMUSG00000020773.12	ENSMUST00000106441.8	2192	6	2202	587	2202	-587	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTTCTCAGTCTGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	115998861	115997164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115997468_115997757_115997830_115998249_115998449_115998603
ENSMUST00000141567.8	chr2	+	754	6	ISM	ENSMUSG00000015094.17	ENST00000371601.5	1407	9	51	1176	23	-1162	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCCACTTCACCTTCAACA	NA	NA	NA	NA	NA	NA	NA	NA	25293205	25298327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_25293378_25296226_25296374_25297607_25297749_25297855_25298027_25298125_25298193_25298271
ENSMUST00000141582.2	chr4	-	1371	3	FSM	ENSMUSG00000086272.2	ENSMUST00000141582.2	1371	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAAGGCTTTGGGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	154034960	154032089	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_154033295_154034549_154034644_154034888
ENSMUST00000141606.3	chr17	+	2003	10	FSM	ENSMUSG00000002279.20	ENSMUST00000141606.3	2003	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTCTCCCTCCACTCCCCG	NA	NA	NA	NA	NA	NA	NA	NA	25798058	25875453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_25798354_25804516_25804827_25807649_25807661_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974
ENSMUST00000141637.2	chr4	+	512	2	FSM	ENSMUSG00000086413.2	ENSMUST00000141637.2	512	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGCTACCATGTGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	84659711	84660528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_84660123_84660427
ENSMUST00000141654.8	chr11	-	588	5	NNC	ENSMUSG00000057594.13	novel	911	5	NA	NA	135	104	at_least_one_novel_splicesite	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGGTGTTTGATAGGA	NA	NA	NA	NA	NA	NA	NA	NA	120358291	120356416	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_120356648_120356809_120356926_120357479_120357559_120358007_120358067_120358188
ENSMUST00000141803.2	chr9	-	1712	3	ISM	ENSMUSG00000032030.17	ENSMUST00000034529.14	3585	19	45477	-424	45473	424	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGGCAACACCTACCTTG	NA	NA	NA	NA	NA	NA	NA	NA	53533334	53527899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_53529311_53532459_53532584_53533157
ENSMUST00000141830.8	chr11	-	887	6	NNC	ENSMUSG00000042032.14	novel	1949	7	NA	NA	153	-1342	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTCTCGACAACCGCCC	NA	NA	NA	NA	NA	NA	NA	NA	40583448	40571482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_40571597_40573290_40573485_40575508_40575662_40576053_40576141_40578427_40578623_40583304
ENSMUST00000141873.2	chr5	+	780	8	ISM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	9412	5231	5493	-3659	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTGACCTAGAACAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	77131941	77142553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_77132090_77132180_77132239_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474
ENSMUST00000141880.2	chr11	-	465	2	FSM	ENSMUSG00000093989.2	ENSMUST00000141880.2	465	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGCTTGCTGTCTGTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	70129884	70128952	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_70129297_70129763
ENSMUST00000141899.8	chr2	-	1969	13	NNC	ENSMUSG00000032046.16	novel	1999	13	NA	NA	10	-24	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTTATTGTTTTCTCTA	NA	NA	NA	NA	NA	NA	NA	NA	150746651	150674436	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_-_150675061_150676198_150676327_150677192_150677272_150679271_150679355_150680230_150680315_150680660_150680699_150681639_150681770_150684165_150684212_150685310_150685342_150688163_150688284_150690271_150690378_150700279_150700405_150746276
ENSMUST00000141904.8	chr6	-	713	6	ISM	ENSMUSG00000059430.15	ENSMUST00000121731.8	1273	9	499	6998	499	-6998	internal_fragment	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGATTTCGAGAATGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	83504473	83496891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_83496942_83497637_83497800_83499797_83499883_83500149_83500261_83503787_83503917_83504297
ENSMUST00000141939.2	chr11	-	724	2	ISM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	9438	98	9438	-98	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCATTTATGCCTAAACAT	NA	NA	NA	NA	NA	NA	NA	NA	117707480	117706449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_117706966_117707272
ENSMUST00000141948.8	chrX	-	1250	3	NIC	ENSMUSG00000041353.13	novel	1256	3	NA	NA	31	6	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	NA	NA	NA	NA	NA	NA	NA	149224102	149191573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_149192597_149203337_149203438_149223975
ENSMUST00000141991.2	chr10	+	802	3	ISM	ENSMUSG00000020183.12	ENSMUST00000020399.6	5195	9	46393	3622	46171	-3622	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCACACAAACGCCACCCC	NA	NA	NA	NA	NA	NA	NA	NA	117511797	117519635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_117511998_117515867_117516017_117519182
ENSMUST00000142029.2	chr4	+	1022	2	FSM	ENSMUSG00000042380.9	ENSMUST00000142029.2	1022	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	378	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGGAGTCCTGCTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	127137576	127141602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_127137692_127140695
ENSMUST00000142075.8	chr7	+	2122	8	ISM	ENSMUSG00000042105.19	ENST00000648262.1	3445	18	68106	85	-7860	-85	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	221	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCTGAACCTTAGCAAATT	NA	NA	NA	NA	NA	NA	NA	NA	128281409	128297181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_128281570_128283971_128284090_128286809_128287009_128292350_128292423_128293475_128293550_128293977_128294107_128295368_128295457_128295899
ENSMUST00000142087.2	chr2	-	795	5	FSM	ENSMUSG00000026939.13	ENSMUST00000142087.2	795	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTTCTGTGGGTGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	25512017	25510078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_25510543_25511077_25511186_25511386_25511471_25511619_25511687_25511945
ENSMUST00000142181.2	chr9	+	410	4	ISM	ENSMUSG00000034593.17	ENSMUST00000155282.9	6372	41	69313	71522	69099	-71522	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTATGCAAAGCTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	75047980	75054310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_75048012_75048716_75048825_75051354_75051462_75054146
ENSMUST00000142241.2	chr19	-	2152	2	FSM	ENSMUSG00000024742.16	ENSMUST00000142241.2	2152	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACCAGAATGTGTCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	10181258	10176505	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_10178462_10181062
ENSMUST00000142373.2	chr4	+	745	2	FSM	ENSMUSG00000087399.2	ENSMUST00000142373.2	745	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAAACAAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	24792679	24800310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_24792900_24799785
ENSMUST00000142397.2	chr11	+	968	4	FSM	ENSMUSG00000034587.9	ENSMUST00000142397.2	968	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAAAATATCTCTTATC	NA	NA	NA	NA	NA	NA	NA	NA	3402471	3429831	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_3402741_3421331_3421587_3429259_3429514_3429641
ENSMUST00000142429.2	chr4	+	272	2	FSM	ENSMUSG00000085395.2	ENSMUST00000142429.2	564	2	0	292	0	-292	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTAACGGCCGCTGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	141005749	141006813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_141005856_141006647
ENSMUST00000142468.2	chr4	-	423	2	ISM	ENSMUSG00000063882.13	ENSMUST00000050580.11	402	4	4953	1	4953	-1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTTGTCCTTCCTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	115927275	115924162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_115924370_115927059
ENSMUST00000142550.8	chr11	-	1403	8	ISM	ENSMUSG00000020775.14	ENSMUST00000106439.2	1411	9	93	4	93	-4	intron_retention	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAATATGTCTTCACTTT	NA	NA	NA	NA	NA	NA	NA	NA	116029601	116022646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267
ENSMUST00000142550.8-0	chr11	-	1171	8	ISM	ENSMUSG00000020775.14	ENSMUST00000106439.2	1411	9	246	83	246	-83	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGCTGGCCTCTCCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	116029448	116022725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267
ENSMUST00000142557.8	chr7	-	405	4	NNC	ENSMUSG00000025102.15	novel	887	5	NA	NA	9	-849	at_least_one_novel_splicesite	TRUE	canonical	NA	NA	NA	NA	38	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGCACTTCCTTGTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	81439217	81432778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_81432887_81435824_81435953_81438197_81438325_81439175
ENSMUST00000142642.2	chr2	-	579	4	FSM	ENSMUSG00000087004.2	ENSMUST00000142642.2	579	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCATGCCGGTGCTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	151792561	151789192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_151789343_151790793_151790959_151791055_151791262_151792503
ENSMUST00000142643.2	chr15	-	505	3	FSM	ENSMUSG00000058600.14	ENSMUST00000142643.2	505	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	34443054	34440650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_34440751_34441377_34441509_34442780
ENSMUST00000142690.2	chr18	-	1256	5	FSM	ENSMUSG00000063889.17	ENSMUST00000142690.2	1256	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTAGTCTTGTGCATTT	NA	NA	NA	NA	NA	NA	NA	NA	3337574	3294481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
ENSMUST00000142695.2	chr4	+	785	5	NNC	ENSMUSG00000006215.13	novel	2722	16	NA	NA	18728	-2176	at_least_one_novel_splicesite	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAACACAAGTGTCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	141190693	141192358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_+_141190719_141190983_141191107_141191547_141191783_141191870_141192014_141192099
ENSMUST00000142761.2	chr6	-	554	2	ISM	ENSMUSG00000001642.19	ENSMUST00000102980.11	1387	10	10791	0	10791	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTGGTGGTCCGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	34283622	34280868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_34281275_34283474
ENSMUST00000142796.8	chr10	-	1135	3	FSM	ENSMUSG00000020083.14	ENSMUST00000142796.8	1135	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGGTGAATGACTGAC	NA	NA	NA	NA	NA	NA	NA	NA	61946829	61943988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_61944903_61945662_61945792_61946737
ENSMUST00000142942.8	chr11	+	1840	7	FSM	ENSMUSG00000083844.9	ENSMUST00000142942.8	1840	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTGACATTTAAGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	5712149	5734710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_5712241_5715508_5715572_5718885_5719073_5719166_5719244_5730205_5730636_5732184_5732358_5733891
ENSMUST00000142948.8	chr10	-	1961	14	FSM	ENSMUSG00000034758.13	ENSMUST00000142948.8	1961	14	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTGTCCTTTACCCAG	NA	NA	NA	NA	NA	NA	NA	NA	81436709	81426737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431210_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
ENSMUST00000143054.2	chr3	+	579	4	FSM	ENSMUSG00000048100.14	ENSMUST00000143054.2	2443	4	12	1852	12	-1852	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCGGTTCCACCCGAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	108479026	108488686	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_108479065_108480195_108480275_108485431_108485530_108488322
ENSMUST00000143083.3	chr9	+	669	4	FSM	ENSMUSG00000096519.2	ENSMUST00000143083.3	669	4	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTCCATGTCCCACAGT	NA	NA	NA	NA	NA	NA	NA	NA	3013139	3014344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_3013206_3013209_3013538_3014004_3014157_3014221
ENSMUST00000143097.2	chrX	+	1449	8	FSM	ENSMUSG00000031189.13	ENST00000370458.5	1450	8	-29	30	-29	-30	multi-exon	FALSE	canonical	NA	NA	NA	NA	787	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTATTTTGCATTAATCT	NA	NA	NA	NA	NA	NA	NA	NA	68404305	68828782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_68404445_68567041_68567163_68588014_68588876_68737549_68737595_68768647_68768685_68769018_68769053_68810787_68810885_68828667
ENSMUST00000143107.2	chr7	+	1158	5	FSM	ENSMUSG00000046364.15	ENSMUST00000143107.2	1158	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2841	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATCTTTAAATCTGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	109118353	109121574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_109118430_109118791_109118856_109119124_109119201_109119674_109119850_109120807
ENSMUST00000143111.8	chr4	-	451	3	FSM	ENSMUSG00000028322.12	ENST00000396521.3	603	3	181	-29	181	29	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGAGTTTCCTGGGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	45320336	45316793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_45317029_45319549_45319700_45320270
ENSMUST00000143122.2	chr10	+	948	2	FSM	ENSMUSG00000085347.2	ENSMUST00000143122.2	1218	2	15	255	0	-255	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAGAGCTCTGTGATGGA	NA	NA	NA	NA	NA	NA	NA	NA	62176400	62186051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_62176563_62185265
ENSMUST00000143206.8	chr6	-	661	5	NNC	ENSMUSG00000053768.14	novel	1550	8	NA	NA	163098	39	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTCTCTTTCCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	32874006	32769571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32873926
ENSMUST00000143310.2	chrX	-	1296	7	FSM	ENSMUSG00000031134.17	ENSMUST00000143310.2	1296	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGACGTGTTTAATTTTA	NA	NA	NA	NA	NA	NA	NA	NA	56438380	56432275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_56432754_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56438211
ENSMUST00000143360.2	chr11	+	1553	5	ISM	ENSMUSG00000038534.20	ENSMUST00000168565.2	3535	24	16063	0	16063	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	NA	NA	NA	NA	NA	NA	NA	NA	96957708	96959730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
ENSMUST00000143412.8	chr5	+	1954	15	NNC	ENSMUSG00000029267.18	novel	4060	15	NA	NA	13	-176	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTTGTGGAATGGGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	108213622	108254775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_+_108213832_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUST00000143419.2	chr1	-	2074	6	FSM	ENSMUSG00000034159.13	ENSMUST00000143419.2	2074	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAGGCTCATGTGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	93088592	93079304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_93079823_93080638_93080996_93082208_93082363_93083700_93083927_93087322_93088073_93088523
ENSMUST00000143451.2	chr16	-	236	1	FSM	ENSMUSG00000052192.6	ENSMUST00000143451.2	236	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAGCAGAAGAAATCGGGA	NA	NA	NA	NA	NA	NA	NA	NA	35393926	35393690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_35393700_35393900
ENSMUST00000143496.8	chr1	-	1599	3	ISM	ENSMUSG00000032997.17	ENSMUST00000079205.14	2892	4	1756	510	1756	-504	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	279	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGAAGACCTTTACCACC	NA	NA	NA	NA	NA	NA	NA	NA	75454159	75451722	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_75452871_75453203_75453384_75453888
ENSMUST00000143503.2	chr4	+	579	3	ISM	ENSMUSG00000029066.13	ENSMUST00000030942.13	764	4	238	37	107	-4	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAGATTGTATAAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	155888215	155893251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155888401_155891364_155891443_155892935
ENSMUST00000143508.3	chr7	+	318	3	ISM	ENSMUSG00000078681.11	ENST00000347970.7	876	5	-1	4205	-1	-4170	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGACTTGCAGGTTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	65343194	65347480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_65343318_65344917_65345076_65347443
ENSMUST00000143521.2	chrX	-	1250	10	NNC	ENSMUSG00000031400.11	novel	2652	13	NA	NA	318	-1376	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAATGAGGCAGTATACAC	NA	NA	NA	NA	NA	NA	NA	NA	73472482	73454464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chrX_-_73454599_73454863_73455051_73455170_73455265_73455571_73455698_73455924_73456087_73457469_73457688_73458513_73458623_73458721_73458760_73471657_73471786_73472428
ENSMUST00000143528.8	chr8	+	852	6	ISM	ENSMUSG00000003573.16	ENSMUST00000003669.8	2323	9	685	2615	539	-1426	internal_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGTCCCAGGGAAACTTC	NA	NA	NA	NA	NA	NA	NA	NA	70738580	70744388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70738713_70742043_70742152_70742701_70742824_70743656_70743814_70743967_70744079_70744166
ENSMUST00000143570.2	chr9	-	505	2	ISM	ENSMUSG00000037742.15	ENST00000610520.5	1735	8	2170	466	2170	-455	internal_fragment	FALSE	canonical	NA	NA	NA	NA	2207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATGTTGCTTGCATAGC	NA	NA	NA	NA	NA	NA	NA	NA	78386783	78386193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_78386475_78386559
ENSMUST00000143705.2	chr4	-	620	2	FSM	ENSMUSG00000086342.2	ENSMUST00000143705.2	620	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTTTGTGCATTGCT	NA	NA	NA	NA	NA	NA	NA	NA	124978740	124976649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_124976857_124978327
ENSMUST00000143762.2	chr11	+	2176	3	NNC	ENSMUSG00000040599.14	novel	3003	3	NA	NA	280	-539	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGCAGCCAGGACTAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	70910716	70917658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_+_70911016_70915383_70915538_70915935
ENSMUST00000143771.2	chr12	+	2532	8	FSM	ENSMUSG00000036257.16	ENSMUST00000143771.2	2974	8	0	442	0	-191	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGCCTTTGCTTTTACT	NA	NA	NA	NA	NA	NA	NA	NA	44329355	44358684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_44330488_44330575_44330726_44334953_44335106_44337348_44337444_44342680_44342853_44346016_44346075_44354701_44354898_44358107
ENSMUST00000143827.8	chr10	+	2176	17	FSM	ENSMUSG00000044005.14	ENST00000623608.3	2271	17	95	0	95	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAATTATAATTTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	128030587	128045803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_128030777_128035050_128035151_128035505_128035628_128036754_128036835_128037074_128037239_128037427_128037487_128039691_128039725_128039943_128040003_128040529_128040597_128040729_128040781_128040956_128041134_128042740_128042873_128043166_128043260_128043429_128043492_128044459_128044537_128044974_128045039_128045156
ENSMUST00000143829.5	chr5	+	2268	9	FSM	ENSMUSG00000036087.19	ENSMUST00000143829.5	4828	9	47	2513	47	-2513	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACACGGTTCATTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	73071758	73133641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_73072357_73098634_73098784_73105904_73106070_73112669_73112832_73114635_73114996_73115491_73115630_73123146_73123225_73131873_73132190_73133339
ENSMUST00000143974.2	chr2	-	1623	13	FSM	ENSMUSG00000075256.10	ENSMUST00000143974.2	1623	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGATATATACAAATAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	79259235	79162873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_79163001_79163822_79164002_79168884_79168982_79171636_79171746_79171830_79171857_79172505_79172566_79172646_79172825_79173560_79173636_79185265_79185409_79191667_79191732_79199023_79199156_79223286_79223530_79259045
ENSMUST00000143992.3	chr9	-	608	3	FSM	ENSMUSG00000045519.16	ENSMUST00000143992.3	608	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTTCTTGTCATATATT	NA	NA	NA	NA	NA	NA	NA	NA	20296473	20263876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_20264138_20265359_20265546_20296312
ENSMUST00000144075.2	chrX	+	349	3	ISM	ENSMUSG00000019087.14	ENSMUST00000114171.10	2157	10	4761	1456	4761	-1456	internal_fragment	TRUE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGAGCCACTCTTTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	73345529	73346839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_73345628_73345967_73346207_73346827
ENSMUST00000144142.2	chr17	+	1627	6	FSM	ENSMUSG00000052525.15	ENSMUST00000144142.2	933	6	0	-694	0	-165	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCCTGTTTCATAAATCAA	NA	NA	NA	NA	NA	NA	NA	NA	71863252	71896363	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_71863485_71865615_71865675_71869497_71869584_71876011_71876184_71885096_71885389_71895577
ENSMUST00000144164.9	chr11	-	3431	5	FSM	ENSMUSG00000020268.15	ENSMUST00000144164.9	3431	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGGAGACATTTGAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	54751738	54729184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_54732029_54739404_54739487_54741170_54741242_54744052_54744126_54751377
ENSMUST00000144166.8	chr4	+	326	3	FSM	ENSMUSG00000085525.8	ENSMUST00000144166.8	326	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTGCTGTTCACATT	NA	NA	NA	NA	NA	NA	NA	NA	146206900	146215004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_146207052_146209452_146209546_146214922
ENSMUST00000144234.8	chr10	+	1593	6	FSM	ENSMUSG00000001436.16	ENSMUST00000144234.8	2309	6	0	716	0	-715	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGACCGCAGCCCTCAGC	NA	NA	NA	NA	NA	NA	NA	NA	76868517	76885550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_76868615_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
ENSMUST00000144236.9	chr17	-	2017	5	FSM	ENSMUSG00000024150.13	ENSMUST00000144236.9	2017	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	NA	NA	NA	NA	NA	NA	NA	87573332	87562085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87571568_87571794_87573262
ENSMUST00000144310.2	chr11	+	343	2	ISM	ENSMUSG00000050628.7	ENSMUST00000057676.7	1482	3	415	854	415	-854	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACAGCCCACGTGGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	116325334	116329049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_116325448_116328819
ENSMUST00000144310.2-0	chr11	+	416	2	ISM	ENSMUSG00000050628.7	ENSMUST00000057676.7	1482	3	415	781	415	-781	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGATGAGACTGGACGCC	NA	NA	NA	NA	NA	NA	NA	NA	116325334	116329122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_116325448_116328819
ENSMUST00000144337.2	chr6	-	433	2	FSM	ENSMUSG00000079523.9	ENSMUST00000144337.2	433	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCATTGAACAGGAAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	72935382	72934637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_72935008_72935319
ENSMUST00000144355.8	chr1	+	691	3	ISM	ENSMUSG00000026201.13	ENSMUST00000027401.11	2876	8	10	3371	10	-1796	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCCCTGGTTTGGCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	75187491	75188879	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_75187697_75187883_75188059_75188568
ENSMUST00000144555.8	chr4	+	1635	7	ISM	ENSMUSG00000000085.17	ENST00000361705.7	2705	10	37173	378	37173	-361	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	148	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGTGTGGCCTATTTCA	NA	NA	NA	NA	NA	NA	NA	NA	120362601	120386998	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_120362711_120365282_120365410_120372270_120372472_120374082_120374275_120379651_120379847_120385352_120385496_120386330
ENSMUST00000144614.8	chr15	-	685	6	NNC	ENSMUSG00000055762.17	novel	2312	8	NA	NA	-201	-776	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATCCTCCATCCTTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	75781405	75768122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_-_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781308
ENSMUST00000144662.8	chr19	+	3223	5	FSM	ENSMUSG00000024691.14	ENSMUST00000144662.8	3912	5	37	652	37	-644	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGATCTGAAATTAACCTT	NA	NA	NA	NA	NA	NA	NA	NA	12545598	12566480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_12546192_12550877_12550945_12554453_12554535_12561286_12561487_12564198
ENSMUST00000144742.6	chr5	+	1466	5	FSM	ENSMUSG00000029177.10	ENSMUST00000144742.6	1466	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1869	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAGTAAAGTTACTGTAA	NA	NA	NA	NA	NA	NA	NA	NA	30824120	30832174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ENSMUST00000144744.8	chr2	+	752	2	ISM	ENSMUSG00000027397.15	ENSMUST00000028880.10	3316	11	39	11606	39	-11599	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTACAACGAAACTCAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	129040722	129041930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_129040913_129041368
ENSMUST00000144756.8	chr3	+	706	2	ISM	ENSMUSG00000027660.17	ENSMUST00000117728.8	2899	9	-60	21965	4	-21499	intron_retention	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACCAGTGTGGCCATGGA	NA	NA	NA	NA	NA	NA	NA	NA	31149213	31151464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_31149307_31150851
ENSMUST00000144848.2	chr2	+	733	6	ISM	ENSMUSG00000027469.17	ENSMUST00000028969.9	3654	18	21606	13589	21606	-13589	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCCTCACAGATGAGCGA	NA	NA	NA	NA	NA	NA	NA	NA	152711520	152722985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934
ENSMUST00000144850.8	chr5	-	434	5	NNC	ENSMUSG00000043510.13	novel	804	6	NA	NA	3457	-10	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGCTTCTGCTAATTGG	NA	NA	NA	NA	NA	NA	NA	NA	110984186	110976945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_110977078_110978801_110978850_110982520_110982666_110983840_110983936_110984172
ENSMUST00000144950.8	chr3	-	2459	4	FSM	ENSMUSG00000028035.14	ENSMUST00000144950.8	2459	4	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTATAGTCTTTTTAATA	NA	NA	NA	NA	NA	NA	NA	NA	151915720	151889618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_151891018_151892051_151892621_151899013_151899256_151915471
ENSMUST00000145003.8	chr12	+	1149	10	FSM	ENSMUSG00000047022.19	ENSMUST00000145003.8	1424	10	45	230	45	-230	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCCCTTAGTACCTATGAA	NA	NA	NA	NA	NA	NA	NA	NA	57277276	57503788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738
ENSMUST00000145111.8	chr6	-	4486	14	FSM	ENSMUSG00000073067.11	ENSMUST00000145111.8	4486	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGGTACTGTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	54407206	54246665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_54248346_54266785_54266867_54269755_54269904_54272303_54272357_54276915_54277051_54277399_54277440_54277775_54278288_54279540_54279669_54283762_54283991_54284292_54284405_54308841_54308996_54378009_54378174_54380570_54380721_54406305
ENSMUST00000145114.8	chr7	+	1116	6	NNC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTCTGATTTGGATAAA	NA	NA	NA	NA	NA	NA	NA	NA	130972874	130989565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986239_130986323_130989346
ENSMUST00000145164.8	chr11	+	242	3	FSM	ENSMUSG00000082286.12	ENSMUST00000145164.8	789	3	102	445	0	-445	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGAGTTTGCTGTCATGTG	NA	NA	NA	NA	NA	NA	NA	NA	3076005	3078951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_3076059_3077478_3077645_3078928
ENSMUST00000145166.8	chr1	+	647	5	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	-13	-4300	intron_retention	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTGGCCTCTACCATTTT	NA	NA	NA	NA	NA	NA	NA	NA	75412604	75415517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_+_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485
ENSMUST00000145216.8	chr8	-	1329	4	NIC	ENSMUSG00000031604.11	novel	2044	6	NA	NA	211	-70	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTAGCTGCCATGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	65186615	65171242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_65172216_65173375_65173531_65175497_65175625_65186541
ENSMUST00000145226.9	chr17	-	494	4	ISM	ENSMUSG00000052146.17	ENSMUST00000155071.9	712	5	-124	1365	-111	-1365	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTCACAAGAGGGGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	27854326	27851307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_27851331_27853045_27853218_27853299_27853450_27854177
ENSMUST00000145247.2	chr1	-	762	1	FSM	ENSMUSG00000086925.2	ENSMUST00000145247.2	762	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	261	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTATGCTGAATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	166773927	166773165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_166773200_166773900
ENSMUST00000145261.8	chr4	-	414	4	NNC	ENSMUSG00000050390.13	novel	5049	7	NA	NA	-12961	-4191	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCAGAGGTGTGTTGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	129155197	129119152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_129119266_129119499_129119556_129119635_129119807_129155123
ENSMUST00000145267.2	chr3	-	521	2	ISM	ENSMUSG00000055436.19	ENSMUST00000072875.15	2654	12	19246	975	19118	-590	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGTGACCTCTAGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	157718157	157717530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_157717841_157717946
ENSMUST00000145271.2	chr2	+	511	5	ISM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	12811	2974	12811	-2974	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCGGAAGGCCAGCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	127441952	127445775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
ENSMUST00000145417.2	chr18	+	875	1	FSM	ENSMUSG00000085939.4	ENSMUST00000145417.2	875	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1326	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCACCAAAGCAAACGAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	50267792	50268667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_50267800_50268700
ENSMUST00000145471.2	chr7	+	721	4	NNC	ENSMUSG00000058454.16	novel	2815	9	NA	NA	11087	-248	at_least_one_novel_splicesite	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACCGCTGCCTCCGTGA	NA	NA	NA	NA	NA	NA	NA	NA	143395070	143401146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_143395109_143396861_143397056_143399177_143399310_143400789
ENSMUST00000145507.8	chr11	+	332	4	FSM	ENSMUSG00000019437.18	ENST00000394933.7	733	4	94	307	94	149	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAACATCTTCCTCACCTT	NA	NA	NA	NA	NA	NA	NA	NA	78068974	78070850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_78069063_78070195_78070279_78070365_78070449_78070772
ENSMUST00000145562.8	chr8	+	2803	4	FSM	ENSMUSG00000074136.10	ENSMUST00000145562.8	2803	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATAAACTATCTCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	96533457	96548356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_96535809_96536858_96536926_96542995_96543075_96548050
ENSMUST00000145614.2	chr2	+	2861	4	FSM	ENSMUSG00000037740.9	ENSMUST00000145614.2	4278	4	0	1417	0	-1417	multi-exon	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATACTGTGACAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	130405661	130409198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_130405911_130406000_130406148_130406227_130406352_130406857
ENSMUST00000145616.2	chr10	-	464	2	ISM	ENSMUSG00000025350.16	ENST00000547072.5	853	4	-110	4288	4	-4288	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGGTGGTCAACATCACCAG	NA	NA	NA	NA	NA	NA	NA	NA	128754427	128753849	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128754008_128754121
ENSMUST00000145670.2	chr10	+	468	2	ISM	ENSMUSG00000006728.13	ENST00000257904.11	1391	8	2451	110	2451	-110	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTATACTGGGATCTTT	NA	NA	NA	NA	NA	NA	NA	NA	126901944	126903104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_126902106_126902797
ENSMUST00000145688.8	chr17	+	484	4	FSM	ENSMUSG00000073435.11	ENST00000563498.1	586	4	15	87	15	-87	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGCTCACAGAGAAATCGC	NA	NA	NA	NA	NA	NA	NA	NA	25115494	25116218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_25115733_25115825_25115928_25116001_25116115_25116187
ENSMUST00000145688.8-0	chr17	+	573	4	FSM	ENSMUSG00000073435.11	ENST00000563498.1	586	4	17	-4	17	4	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCAGTCAGCATTACCA	NA	NA	NA	NA	NA	NA	NA	NA	25115496	25116309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_25115733_25115825_25115928_25116001_25116115_25116187
ENSMUST00000145719.2	chr15	-	1441	8	NNC	ENSMUSG00000044224.17	novel	2060	12	NA	NA	9109	-9	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATGTGCCTTTCTGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	10461493	10446850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_-_10447313_10447781_10447858_10449661_10449835_10451640_10451684_10452291_10452451_10454855_10454939_10460035_10460193_10461205
ENSMUST00000145735.6	chr3	+	881	4	FSM	ENSMUSG00000087260.6	ENSMUST00000145735.6	881	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGGTTCATTTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	107186173	107191395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_107186430_107187185_107187248_107189224_107189343_107190950
ENSMUST00000145737.8	chr11	+	904	6	NIC	ENSMUSG00000061878.17	novel	1879	6	NA	NA	10	-945	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTGCGGCTCTATTCT	NA	NA	NA	NA	NA	NA	NA	NA	116423279	116426538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_116423518_116424795_116425000_116425677_116425828_116425905_116426001_116426077_116426194_116426437
ENSMUST00000145828.8	chr11	+	885	9	ISM	ENSMUSG00000018932.10	ENSMUST00000019076.10	2198	12	21	5681	21	-5681	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGAATCAGAAGGGCTACA	NA	NA	NA	NA	NA	NA	NA	NA	60822879	60837956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_60823098_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60836336_60836389_60837469_60837598_60837936
ENSMUST00000145900.8	chr17	-	749	6	ISM	ENSMUSG00000003534.18	ENSMUST00000166980.9	3627	18	-2	9565	-2	-9543	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAGGGTAAGAGGGATGG	NA	NA	NA	NA	NA	NA	NA	NA	36012938	36002026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_36002123_36002338_36002487_36003747_36003977_36004483_36004587_36004679_36004810_36012895
ENSMUST00000145963.9	chr18	+	2574	4	FSM	ENSMUSG00000057130.13	ENSMUST00000145963.9	4078	4	51	1453	51	-1453	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGGAACCTGAGCATGG	NA	NA	NA	NA	NA	NA	NA	NA	80250060	80267617	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_80250117_80250368_80250559_80261918_80262023_80265393
ENSMUST00000145971.2	chr10	-	830	4	FSM	ENSMUSG00000087177.8	ENSMUST00000145971.2	830	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTAAGCAGTTTGGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	39607978	39515562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_39515763_39516375_39516508_39521551_39521805_39607733
ENSMUST00000145997.2	chr7	-	381	2	ISM	ENSMUSG00000003099.12	ENST00000391919.1	1878	12	13	17719	13	-17719	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGTGGACGTGGAGGGAT	NA	NA	NA	NA	NA	NA	NA	NA	16761714	16756297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_16756582_16761617
ENSMUST00000146076.8	chr2	-	869	3	ISM	ENSMUSG00000059173.20	ENST00000409365.5	2018	14	-128	67099	-128	-46965	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGGAAGCACCATGATTC	NA	NA	NA	NA	NA	NA	NA	NA	79869373	79736333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_79736517_79758018_79758133_79868801
ENSMUST00000146154.2	chr4	+	770	5	FSM	ENSMUSG00000085614.2	ENSMUST00000146154.2	770	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTAGTCTCTGGACCCC	NA	NA	NA	NA	NA	NA	NA	NA	11966573	11993999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_11966684_11976443_11976588_11977456_11977571_11980141_11980409_11993864
ENSMUST00000146183.2	chr17	+	212	2	ISM	ENSMUSG00000002767.14	ENSMUST00000113430.2	991	7	2742	141	1614	-121	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGCAACGCAAGGGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	46959937	46960924	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_46960035_46960809
ENSMUST00000146201.8	chr9	+	2009	6	FSM	ENSMUSG00000032309.16	ENSMUST00000146201.8	2009	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGGTGTTGTAATTATTG	NA	NA	NA	NA	NA	NA	NA	NA	55116473	55131715	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
ENSMUST00000146233.8	chr11	+	2597	6	FSM	ENSMUSG00000040483.16	ENSMUST00000146233.8	2597	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGAGCTGTGTCTTTCACG	NA	NA	NA	NA	NA	NA	NA	NA	72192455	72204559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_72192536_72194152_72194289_72195491_72195688_72197389_72197479_72199432_72199751_72202781
ENSMUST00000146243.2	chr2	-	2894	2	FSM	ENSMUSG00000050619.15	ENSMUST00000146243.2	2894	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATTAAAAACAAAATAACA	NA	NA	NA	NA	NA	NA	NA	NA	121001606	120995621	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_120997200_121000290
ENSMUST00000146306.2	chr3	+	748	6	ISM	ENSMUSG00000042626.14	ENSMUST00000094378.10	2617	12	2898	1741	2860	-1741	internal_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCACGACCACGCCTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	89331832	89334665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514
ENSMUST00000146310.2	chr5	-	1139	6	ISM	ENSMUSG00000028945.10	ENSMUST00000030787.9	1784	8	28759	133	-6059	-133	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCTCTTACATTTTCACA	NA	NA	NA	NA	NA	NA	NA	NA	25018863	25007953	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795
ENSMUST00000146324.8	chr3	-	1264	5	FSM	ENSMUSG00000050174.16	ENSMUST00000146324.8	1264	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGTTTTTCTCTACTGA	NA	NA	NA	NA	NA	NA	NA	NA	37474335	37459058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_37459644_37463656_37463712_37466508_37466565_37470849_37471054_37473971
ENSMUST00000146334.2	chr11	-	527	2	FSM	ENSMUSG00000085260.8	ENSMUST00000146334.2	527	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGAAGGTATATCTTAG	NA	NA	NA	NA	NA	NA	NA	NA	59838968	59837714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_59837923_59838649
ENSMUST00000146419.2	chr11	+	780	7	ISM	ENSMUSG00000017774.20	ENSMUST00000108431.3	4718	32	12221	3654	12221	-3654	internal_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCCTGGCCCACACCCCC	NA	NA	NA	NA	NA	NA	NA	NA	75558919	75561080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956
ENSMUST00000146468.4	chr14	+	1072	6	FSM	ENSMUSG00000050335.18	ENSMUST00000146468.4	1072	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATACCCATCGCTTTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	47611420	47623251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_47611580_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
ENSMUST00000146491.8	chr12	-	535	3	ISM	ENSMUSG00000021287.13	ENST00000553264.5	835	4	-15	501	-15	-501	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGGGGCCACACTGCGAA	NA	NA	NA	NA	NA	NA	NA	NA	111776416	111771412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_111771562_111774266_111774422_111776185
ENSMUST00000146505.2	chr15	+	151	1	FSM	ENSMUSG00000036305.8	ENSMUST00000146505.2	151	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	326	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTAAGGATTCACACAATG	NA	NA	NA	NA	NA	NA	NA	NA	102543472	102543623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102543500_102543600
ENSMUST00000146553.8	chr2	+	770	3	FSM	ENSMUSG00000086454.8	ENSMUST00000146553.8	770	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAACCTGTTCAGACATG	NA	NA	NA	NA	NA	NA	NA	NA	104389507	104398401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_104389830_104390068_104390321_104398205
ENSMUST00000146562.2	chr11	+	405	2	ISM	ENSMUSG00000001039.13	ENSMUST00000102657.10	817	7	7171	0	7171	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCCTTCATTTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	61403140	61403757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_61403266_61403477
ENSMUST00000146631.2	chr15	+	819	1	FSM	ENSMUSG00000067547.7	ENSMUST00000146631.2	819	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCAGCCGGGCCACGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	6683403	6684222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_6683400_6684200
ENSMUST00000146659.8	chr4	+	2813	18	FSM	ENSMUSG00000061887.15	ENST00000417664.7	2812	18	0	-1	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTCCTGACATACTTGT	NA	NA	NA	NA	NA	NA	NA	NA	106769494	106906891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_106769556_106770099_106770173_106770401_106770464_106772841_106772927_106866875_106866966_106884413_106884495_106885389_106885450_106888058_106888126_106888211_106888289_106894132_106894198_106894798_106894848_106895418_106895455_106895922_106895978_106897159_106897231_106903512_106903592_106904438_106904468_106904560_106904663_106905220
ENSMUST00000146695.8	chr2	+	789	6	ISM	ENSMUSG00000027455.17	ENSMUST00000028949.16	1364	9	8687	316	8676	-316	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGAGCTGGCTGATGAG	NA	NA	NA	NA	NA	NA	NA	NA	151344899	151352909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
ENSMUST00000146695.8-0	chr2	+	941	6	ISM	ENSMUSG00000027455.17	ENSMUST00000028949.16	1364	9	8687	164	8676	-164	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCGTACACACCTAGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	151344899	151353061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
ENSMUST00000146760.7	chr7	-	1075	9	FSM	ENSMUSG00000110206.2	ENSMUST00000146760.7	1075	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGCTGCGTGCCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	44785856	44780612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44780856_44781492_44781562_44781651_44781837_44783305_44783451_44783796_44783941_44784545_44784600_44785087_44785202_44785441_44785509_44785802
ENSMUST00000146840.3	chr11	-	1828	14	FSM	ENSMUSG00000014195.17	ENSMUST00000146840.3	1828	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAATAAAATGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	100504183	100473670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100504017
ENSMUST00000146863.2	chr8	+	531	3	FSM	ENSMUSG00000038005.16	ENSMUST00000146863.2	531	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCTCTTCTAGTGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	61343451	61360609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_61343571_61358581_61358755_61360370
ENSMUST00000146865.2	chr12	-	3133	11	FSM	ENSMUSG00000002997.16	ENSMUST00000146865.2	3133	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACGTTCCAAGCATGGTT	NA	NA	NA	NA	NA	NA	NA	NA	32110588	32008478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_32010522_32012997_32013137_32013896_32013963_32015113_32015189_32017211_32017314_32022048_32022203_32025917_32026025_32037878_32037963_32043729_32043783_32088620_32088657_32110314
ENSMUST00000146867.2	chr17	+	962	5	FSM	ENSMUSG00000044533.16	ENSMUST00000146867.2	962	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	24939224	24940899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_24939427_24939507_24939706_24939942_24940277_24940596_24940702_24940776
ENSMUST00000146900.2	chr8	-	295	3	ISM	ENSMUSG00000005150.17	ENSMUST00000093357.12	1238	9	4639	213	4639	-213	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATCCAGTACTGGCGAGA	NA	NA	NA	NA	NA	NA	NA	NA	85802736	85801876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85801973_85802451_85802567_85802652
ENSMUST00000146924.2	chr16	-	499	2	ISM	ENSMUSG00000022940.18	ENSMUST00000113910.8	966	5	5177	5	4772	-5	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAACCTTGAGTAGATCTA	NA	NA	NA	NA	NA	NA	NA	NA	94166376	94165310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_94165647_94166213
ENSMUST00000146939.2	chr8	-	432	1	FSM	ENSMUSG00000066902.8	ENSMUST00000146939.2	432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGACAATGGAAACACA	NA	NA	NA	NA	NA	NA	NA	NA	3634230	3633798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_3633800_3634200
ENSMUST00000146961.2	chr2	-	741	3	ISM	ENSMUSG00000027122.16	ENSMUST00000093883.4	1363	5	859	1066	859	-1066	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGACCGAAAGTGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	106799877	106795839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_106795992_106797444_106797573_106799416
ENSMUST00000146972.3	chr8	+	365	4	NNC	ENSMUSG00000031848.16	novel	925	5	NA	NA	-6	-403	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCGGCGCTGGCCGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	71126028	71130766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_+_71126108_71129204_71129247_71130427_71130509_71130603
ENSMUST00000146979.2	chr11	-	2143	5	ISM	ENSMUSG00000020368.16	ENST00000680006.1	3548	14	26250	292	26250	-233	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCAGTGTTTATATTGGG	NA	NA	NA	NA	NA	NA	NA	NA	50190141	50185526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955
ENSMUST00000146980.2	chr2	+	412	4	FSM	ENSMUSG00000084762.2	ENSMUST00000146980.2	412	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	NA	NA	NA	NA	NA	NA	NA	135490826	135493983	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_135490892_135491052_135491123_135493417_135493478_135493766
ENSMUST00000147013.3	chr15	+	659	4	FSM	ENSMUSG00000115317.2	ENSMUST00000147013.3	1334	4	0	675	0	-675	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCAGGAAATGAAAAGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	32779049	32795477	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_32779331_32779456_32779577_32793709_32793757_32795266
ENSMUST00000147051.2	chr2	-	1572	2	ISM	ENSMUSG00000047030.16	ENSMUST00000109211.9	1531	4	7251	2012	7251	-2012	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCGTGCTGCAGAAAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	167327514	167325364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_167326500_167327077
ENSMUST00000147110.8	chr2	-	853	7	NNC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	185	-194	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTCCTGCTGCCTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	26806357	26803588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_-_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805782_26806268
ENSMUST00000147117.8	chr16	+	1947	10	FSM	ENSMUSG00000022884.17	ENSMUST00000168891.8	2203	10	275	-19	-4	19	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATACCAAAAAAAGTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	22926503	22932886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUST00000147117.8-0	chr16	+	1763	10	FSM	ENSMUSG00000022884.17	ENSMUST00000168891.8	2203	10	0	440	0	-218	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGCATATCTGCCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	22926228	22932427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUST00000147118.8	chr10	-	530	7	NNC	ENSMUSG00000020263.15	novel	3020	21	NA	NA	20436	-14226	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCAAGAGTTGCTTTCG	NA	NA	NA	NA	NA	NA	NA	NA	83464166	83450122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_83450160_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092
ENSMUST00000147125.2	chr7	+	1582	3	NNC	ENSMUSG00000038797.14	novel	1871	4	NA	NA	29	-496	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	374	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCTTCAGCCAGAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	80510700	80525636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_80510826_80512915_80513420_80524683
ENSMUST00000147139.2	chr3	+	1932	4	FSM	ENSMUSG00000048332.14	ENSMUST00000147139.2	1932	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACTGAGTCACCGAGTT	NA	NA	NA	NA	NA	NA	NA	NA	52949003	53169100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_52949102_52950566_52951113_53139150_53139250_53167911
ENSMUST00000147148.5	chr5	+	356	3	FSM	ENSMUSG00000061461.12	ENSMUST00000147148.5	922	3	52	514	52	-514	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGAGGGAACTCTCATGC	NA	NA	NA	NA	NA	NA	NA	NA	53424531	53435368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_53424701_53434484_53434542_53435238
ENSMUST00000147165.8	chr4	+	1964	10	NIC	ENSMUSG00000028653.17	novel	2074	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	122910389	122948742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122942944_122943058_122943269_122943348_122946276_122946395_122947915
ENSMUST00000147196.3	chr10	-	860	4	FSM	ENSMUSG00000019797.12	ENSMUST00000147196.3	860	4	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTCACCGGAGCACTCT	NA	NA	NA	NA	NA	NA	NA	NA	43416964	43401128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_43401405_43406593_43406667_43408671_43409154_43416935
ENSMUST00000147196.3-0	chr10	-	779	4	FSM	ENSMUSG00000019797.12	ENSMUST00000147196.3	860	4	2	79	2	-69	multi-exon	FALSE	canonical	NA	NA	NA	NA	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGCCTCCTAATTGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	43416962	43401207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_43401405_43406593_43406667_43408671_43409154_43416935
ENSMUST00000147272.8	chr4	+	606	3	FSM	ENSMUSG00000035649.18	ENSMUST00000147272.8	4251	3	2877	768	2877	-756	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAAGCCTAAGCCGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	44925994	44931447	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_44926071_44929117_44929236_44931035
ENSMUST00000147311.2	chr17	-	333	1	FSM	ENSMUSG00000067575.6	ENSMUST00000147311.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	29356278	29355945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_29355900_29356300
ENSMUST00000147331.9	chr7	-	784	5	NNC	ENSMUSG00000025486.18	novel	1416	7	NA	NA	0	-5504	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTTGAAAGGCATGTGG	NA	NA	NA	NA	NA	NA	NA	NA	140461782	140449401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_140449564_140456266_140456368_140457562_140457796_140457869_140458051_140461675
ENSMUST00000147394.8	chr9	+	452	5	NNC	ENSMUSG00000036781.14	novel	575	5	NA	NA	75	-44	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTATTTTGGTGTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	66853447	66856750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_+_66853463_66854112_66854222_66854868_66854980_66855922_66856000_66856610
ENSMUST00000147521.8	chrX	+	1107	2	FSM	ENSMUSG00000054293.11	ENSMUST00000167673.2	3044	2	0	1937	0	-1933	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAGAATGGTTCTAATGT	NA	NA	NA	NA	NA	NA	NA	NA	106192532	106215330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_106192754_106214444
ENSMUST00000147532.8	chr17	-	1447	11	FSM	ENSMUSG00000051977.17	ENSMUST00000147532.8	1447	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAACAAGCATTTCTATA	NA	NA	NA	NA	NA	NA	NA	NA	15784602	15773485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_15773808_15774949_15775018_15775348_15775621_15775827_15775930_15777562_15777720_15777808_15777837_15779284_15779335_15782676_15782785_15783075_15783200_15783482_15783594_15784497
ENSMUST00000147545.8	chr10	+	4018	9	FSM	ENSMUSG00000048701.14	ENSMUST00000147545.8	5511	9	0	1493	0	-1493	multi-exon	TRUE	canonical	NA	NA	NA	NA	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTCAGTGGCTTCATTTC	NA	NA	NA	NA	NA	NA	NA	NA	69932950	70027537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_69933412_69978408_69978559_69990537_69990667_70002831_70002936_70004921_70005083_70010840_70010998_70017989_70018091_70023520_70023646_70024907
ENSMUST00000147571.8	chr1	-	1360	6	FSM	ENSMUSG00000026049.12	ENSMUST00000147571.8	1360	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTCAGACTAATGTTC	NA	NA	NA	NA	NA	NA	NA	NA	44141522	44125969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059
ENSMUST00000147609.3	chr14	-	440	3	NIC	ENSMUSG00000034194.19	novel	1726	8	NA	NA	31	-8317	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGAGCCTAGAGAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	69945002	69943073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_69943328_69943995_69944134_69944954
ENSMUST00000147619.2	chr5	+	771	5	ISM	ENSMUSG00000056310.15	ENSMUST00000100662.10	1867	8	1895	8358	1895	-8358	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGGAGAGGCGCGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	130287770	130298232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006
ENSMUST00000147632.3	chr13	+	555	3	FSM	ENSMUSG00000071451.11	ENSMUST00000147632.3	555	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCATTTTACTTTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	34346946	34362156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_34347233_34350043_34350120_34361963
ENSMUST00000147642.2	chr8	+	1865	4	FSM	ENSMUSG00000074247.11	ENSMUST00000147642.2	1865	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	71921848	71928742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71921970_71924680_71924762_71924838_71924891_71927131
ENSMUST00000147700.8	chr1	+	651	6	ISM	ENSMUSG00000042671.13	ENST00000483095.6	1415	7	-43	2467	-43	-1896	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTCCACGGGAGGTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	153541338	153566796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_153541460_153541581_153541663_153543570_153543700_153546528_153546631_153547499_153547565_153566643
ENSMUST00000147700.8-0	chr1	+	521	6	ISM	ENSMUSG00000042671.13	ENST00000483095.6	1415	7	37	2517	0	-1946	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	133	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTAGTCACCAAGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	153541418	153566746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_153541460_153541581_153541663_153543570_153543700_153546528_153546631_153547499_153547565_153566643
ENSMUST00000147703.3	chr2	-	685	5	NNC	ENSMUSG00000009030.15	novel	3056	4	NA	NA	57	-1570	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGACTGAAGCCATGAATGG	NA	NA	NA	NA	NA	NA	NA	NA	37249208	37242169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_-_37242395_37245647_37245830_37247215_37247393_37248363_37248411_37249154
ENSMUST00000147710.2	chr11	+	581	6	NNC	ENSMUSG00000018672.16	novel	930	9	NA	NA	4255	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCCTTTCTTGACTTTG	NA	NA	NA	NA	NA	NA	NA	NA	96744956	96752029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_+_96744976_96745409_96745466_96746085_96746160_96747497_96747550_96748378_96748418_96751688
ENSMUST00000147729.8	chr5	+	537	4	ISM	ENSMUSG00000035297.15	ENSMUST00000045993.15	1755	10	0	17694	0	-17671	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	175	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAAGTGTTGGTGGGGAT	NA	NA	NA	NA	NA	NA	NA	NA	100666174	100677975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912
ENSMUST00000147762.9	chr11	-	611	4	FSM	ENSMUSG00000085156.9	ENSMUST00000147762.9	611	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	6478779	6475590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_6475818_6476354_6476438_6478305_6478375_6478547
ENSMUST00000147796.2	chr9	-	560	2	ISM	ENSMUSG00000004936.9	ENSMUST00000005066.9	2436	11	66294	516	66294	-516	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGTGAGACCCTTCACA	NA	NA	NA	NA	NA	NA	NA	NA	64094619	64093567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_64094081_64094572
ENSMUST00000147799.8	chr1	+	464	5	ISM	ENSMUSG00000003464.14	ENSMUST00000075895.9	1917	8	18	4646	11	-4646	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGAAAGCCATGGAAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	171954339	171958204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178
ENSMUST00000147802.9	chr10	+	3291	11	FSM	ENSMUSG00000020175.16	ENSMUST00000147802.9	3291	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGGTGTGATGAGCATGT	NA	NA	NA	NA	NA	NA	NA	NA	74872897	74890580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_74873154_74874271_74874353_74877671_74877764_74880302_74880369_74881863_74881966_74884280_74884346_74885727_74885780_74886469_74886552_74886821_74886913_74887749_74887876_74888302
ENSMUST00000147826.2	chr4	+	940	4	NNC	ENSMUSG00000047613.11	novel	1098	4	NA	NA	29	-115	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGATGAATTCTGCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	154041722	154046260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_+_154041780_154044212_154044320_154044987_154045450_154045946
ENSMUST00000147839.8	chr5	-	2223	2	ISM	ENSMUSG00000036555.15	ENSMUST00000041783.14	6037	23	36137	1678	27289	-1678	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTGCCTTTGGCAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	140651996	140649259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_140651249_140651762
ENSMUST00000147881.8	chr7	-	728	7	FSM	ENSMUSG00000025724.13	ENST00000560266.5	1057	7	-57	386	2	-102	multi-exon	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACACACGTTGGCACTTC	NA	NA	NA	NA	NA	NA	NA	NA	80597259	80565510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_80565653_80565922_80565981_80572094_80572133_80572848_80572969_80577484_80577635_80584774_80584885_80597149
ENSMUST00000147914.8	chr10	+	1836	9	FSM	ENSMUSG00000020109.14	ENSMUST00000147914.8	3041	9	70	1135	0	-354	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAGCCTGACTGATGGCA	NA	NA	NA	NA	NA	NA	NA	NA	59715447	59733989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732270_59733312
ENSMUST00000147962.3	chr3	-	895	7	NNC	ENSMUSG00000038526.15	novel	1709	11	NA	NA	6	-928	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	125	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAGCCCTAAAAACCTACA	NA	NA	NA	NA	NA	NA	NA	NA	95811997	95807051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_-_95807119_95807242_95807339_95807554_95807698_95808404_95808585_95808770_95808793_95809422_95809444_95811631
ENSMUST00000147995.2	chr7	+	766	3	FSM	ENSMUSG00000045752.14	ENSMUST00000177841.8	1364	3	56	542	56	-482	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCAACCAGGACCCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	142623160	142624282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_142623251_142623491_142623558_142623672
ENSMUST00000147995.2-0	chr7	+	908	3	FSM	ENSMUSG00000045752.14	ENSMUST00000177841.8	1364	3	56	400	56	-340	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGCCCATCTCGCTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	142623160	142624424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_142623251_142623491_142623558_142623672
ENSMUST00000148026.2	chr4	+	306	1	FSM	ENSMUSG00000084274.3	ENSMUST00000148026.2	306	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGCAAAAGGAAAAGTACC	NA	NA	NA	NA	NA	NA	NA	NA	44123237	44123543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_44123200_44123500
ENSMUST00000148095.2	chr3	-	1045	5	NNC	ENSMUSG00000027953.14	novel	1022	6	NA	NA	1	-2	intron_retention	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGCAGAGTGATGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	89177876	89175554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177447_89177777
ENSMUST00000148102.2	chr15	-	466	1	FSM	ENSMUSG00000085442.2	ENSMUST00000148102.2	466	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAACTGAGTCCAGATGG	NA	NA	NA	NA	NA	NA	NA	NA	37944036	37943570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_37943600_37944000
ENSMUST00000148159.3	chr18	+	1921	2	FSM	ENSMUSG00000062210.14	ENSMUST00000148159.3	1921	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	376	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGGGATTTAGATTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	50186348	50224849	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_50186687_50223266
ENSMUST00000148189.3	chr19	+	259	3	ISM	ENSMUSG00000024835.16	ENSMUST00000008893.9	1888	11	2961	754	2961	-754	internal_fragment	TRUE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGCAGAGGATTGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	4201578	4203280	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4201725_4202520_4202579_4203225
ENSMUST00000148201.8	chr1	+	1150	9	FSM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	135727570	135738727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_135727759_135730331_135730362_135731019_135731024_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
ENSMUST00000148223.8	chr4	-	845	4	NNC	ENSMUSG00000036078.17	novel	1640	4	NA	NA	-3713	-608	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	170	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATACTCCAGGGGGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	41745072	41739100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_41739581_41740549_41740643_41740775_41740977_41745001
ENSMUST00000148235.8	chr8	-	1459	4	FSM	ENSMUSG00000014633.16	ENSMUST00000148235.8	1459	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTTTGCAGAGTGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	117648194	117615423	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_117616599_117620826_117620899_117637866_117637974_117648089
ENSMUST00000148248.3	chr2	+	883	5	ISM	ENSMUSG00000026728.10	ENSMUST00000028062.8	2193	9	5417	0	5088	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7126	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGGTGTGTTATTTTA	NA	NA	NA	NA	NA	NA	NA	NA	13584179	13587637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
ENSMUST00000148258.2	chr17	-	729	9	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	18818	-4021	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTCATGGACCGCATG	NA	NA	NA	NA	NA	NA	NA	NA	33885544	33869233	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_-_33869372_33871246_33871301_33877361_33877440_33877873_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467
ENSMUST00000148263.3	chr11	-	912	9	FSM	ENSMUSG00000018425.19	ENST00000587125.1	914	9	-3	5	-3	-5	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGACTGCTGTGGCTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	86691914	86666485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86680311_86680399_86683987_86684088_86689747_86689815_86690398_86690474_86691794
ENSMUST00000148282.2	chr5	-	333	1	FSM	ENSMUSG00000094664.2	ENSMUST00000148282.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	123393876	123393543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_123393500_123393900
ENSMUST00000148294.2	chr2	-	921	3	ISM	ENSMUSG00000058835.15	ENSMUST00000178908.2	2239	11	89917	199	89802	-199	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATGTATTGAAATATAC	NA	NA	NA	NA	NA	NA	NA	NA	22840314	22831443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_22832060_22836587_22836774_22840195
ENSMUST00000148295.8	chr2	+	273	4	ISM	ENSMUSG00000032966.15	ENSMUST00000044011.12	1658	5	213	2172	88	-1727	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCAGGCATCATCCCACC	NA	NA	NA	NA	NA	NA	NA	NA	151384615	151401440	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377
ENSMUST00000148349.2	chr6	-	431	3	NNC	ENSMUSG00000029752.13	novel	2016	12	NA	NA	-1	-105	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCCAATAAGAAAGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	7692872	7685273	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_7685407_7689251_7689524_7692846
ENSMUST00000148364.2	chr11	+	1257	3	FSM	ENSMUSG00000085803.2	ENSMUST00000148364.2	1257	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTTTTTAGAAAATTTT	NA	NA	NA	NA	NA	NA	NA	NA	22684037	22687937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_22684201_22685598_22685684_22686928
ENSMUST00000148379.2	chr11	-	428	2	NIC	ENSMUSG00000020910.17	novel	1283	5	NA	NA	-21	-3696	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGCAGAGACTACTTAGC	NA	NA	NA	NA	NA	NA	NA	NA	66943417	66932562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_66932934_66943360
ENSMUST00000148465.8	chr3	-	784	6	ISM	ENSMUSG00000027708.15	ENST00000469954.5	914	7	-17	1911	-17	-1855	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGATGAAGAAGGTAGCAAAA	NA	NA	NA	NA	NA	NA	NA	NA	35991594	35951623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119_35975337_35991496
ENSMUST00000148479.2	chr4	-	939	4	ISM	ENSMUSG00000037295.8	ENSMUST00000037828.8	6549	9	17917	5022	17894	-664	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTGCACTTTAACTCTC	NA	NA	NA	NA	NA	NA	NA	NA	134477418	134473886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_134474511_134475592_134475628_134476647_134476779_134477269
ENSMUST00000148480.2	chr5	-	695	4	NNC	ENSMUSG00000035505.15	novel	1307	6	NA	NA	33	-4211	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCAACCTACTGATAGTG	NA	NA	NA	NA	NA	NA	NA	NA	90371798	90366793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_90366896_90367218_90367383_90370089_90370195_90371474
ENSMUST00000148482.8	chr17	-	1193	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148482.8	1193	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	NA	NA	NA	NA	NA	NA	NA	36208012	36203568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36207871
ENSMUST00000148493.2	chr3	-	579	3	ISM	ENSMUSG00000040412.18	ENST00000529753.5	2888	20	66396	9434	66396	-9434	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGCCGGGTTCTAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	108377397	108375071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_108375333_108376843_108376982_108377217
ENSMUST00000148498.8	chr2	+	479	3	ISM	ENSMUSG00000047909.12	ENSMUST00000056108.12	1618	7	5802	352	5802	-352	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCGGCCAGCGTTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	11789103	11794784	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_11789264_11791034_11791114_11794544
ENSMUST00000148500.2	chr2	+	809	3	ISM	ENSMUSG00000027425.19	ENSMUST00000147747.8	3299	11	33348	660	33348	-660	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGTAGACCAGAACCAAG	NA	NA	NA	NA	NA	NA	NA	NA	144244266	144248936	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_144244491_144245918_144246110_144248542
ENSMUST00000148537.2	chr17	+	510	2	ISM	ENSMUSG00000023939.8	ENSMUST00000024734.8	645	3	9094	95	9094	-95	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTTTGTGTGAGCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	46006341	46009326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_46006499_46008973
ENSMUST00000148562.8	chr16	+	575	5	ISM	ENSMUSG00000022832.12	ENST00000251776.8	843	6	-27	1399	-27	-1399	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGATTCCTTTCAGCACCTT	NA	NA	NA	NA	NA	NA	NA	NA	34470290	34497571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_34470392_34487053_34487182_34490266_34490385_34491470_34491633_34497505
ENSMUST00000148601.2	chr11	-	3538	13	NIC	ENSMUSG00000020777.17	novel	3743	14	NA	NA	9226	0	combination_of_known_splicesites	TRUE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGCTGTTACGTGTAGA	NA	NA	NA	NA	NA	NA	NA	NA	116080401	116062713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116080240
ENSMUST00000148612.2	chr4	-	641	3	ISM	ENSMUSG00000028851.7	ENSMUST00000030665.7	1316	8	10069	1686	10069	-1686	internal_fragment	FALSE	canonical	NA	NA	NA	NA	384	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACGAGCGTCCCGTCCTAG	NA	NA	NA	NA	NA	NA	NA	NA	133263238	133261538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_133261854_133262820_133262887_133262978
ENSMUST00000148633.4	chr5	+	2251	8	FSM	ENSMUSG00000003161.16	ENSMUST00000148633.4	2251	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	754	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAACATTCCATAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	8106526	8119151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_8106640_8107537_8107622_8109352_8109423_8112383_8112428_8113259_8113408_8113636_8113751_8114557_8114617_8117532
ENSMUST00000148721.8	chr17	-	1293	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148721.8	1293	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	NA	NA	NA	NA	NA	NA	NA	36208323	36203568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36208082
ENSMUST00000148738.2	chr11	+	354	4	ISM	ENSMUSG00000018167.11	ENSMUST00000018311.5	2070	15	18079	3612	18079	-3612	internal_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGTGGATCAGATCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	98267272	98268313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_98267434_98267577_98267677_98267890_98267947_98268275
ENSMUST00000148807.11	chr19	+	937	7	NIC	ENSMUSG00000024845.20	novel	938	7	NA	NA	4	3	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCACTTTCCTGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	4175978	4181734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
ENSMUST00000148871.2	chr5	-	737	5	ISM	ENSMUSG00000043733.15	ENSMUST00000054547.9	5535	16	47694	3299	47694	-3299	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACAGATCTGATTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	121281698	121271902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_121272210_121272798_121272890_121275479_121275593_121281065_121281218_121281624
ENSMUST00000148888.2	chr11	-	469	3	NNC	ENSMUSG00000039096.11	novel	4143	9	NA	NA	597	-4837	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAACAGCTTCAGAAACTG	NA	NA	NA	NA	NA	NA	NA	NA	94439428	94435460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_94435612_94439003_94439190_94439296
ENSMUST00000149114.2	chr16	-	932	2	ISM	ENSMUSG00000052516.20	ENST00000332191.12	4984	25	149743	313	149743	-313	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGGTAGCAAAGATGTAC	NA	NA	NA	NA	NA	NA	NA	NA	73694077	73691969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_73692719_73693894
ENSMUST00000149116.2	chr8	+	1522	4	ISM	ENSMUSG00000025809.16	ENST00000423113.5	3566	15	17264	38	17264	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	218	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTTTGGCTCTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	129450813	129459681	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_129450910_129452500_129452668_129453463_129453545_129458503
ENSMUST00000149122.2	chr7	+	470	2	FSM	ENSMUSG00000030647.9	ENSMUST00000149122.2	470	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACTGGCTGCTTGCGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	97049309	97056287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_97049565_97056072
ENSMUST00000149126.2	chr11	+	676	4	ISM	ENSMUSG00000032691.15	ENSMUST00000101148.9	4021	10	70	18838	-56	-18153	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCAAGCAGGAGCGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	59433581	59438944	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_59433694_59433894_59434216_59437599_59437714_59438815
ENSMUST00000149163.8	chr2	+	1378	8	FSM	ENSMUSG00000000827.19	ENSMUST00000149163.8	3603	8	34	2191	0	388	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTAGCCTCATTGTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	181138991	181157568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181153366_181153409_181154831_181154881_181156872
ENSMUST00000149191.2	chr2	-	280	2	ISM	ENSMUSG00000016252.8	ENSMUST00000016396.8	421	3	1476	0	1400	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	941	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTTTGTTTCTGTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	174304422	174302864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_174303015_174304292
ENSMUST00000149263.2	chr12	-	231	1	FSM	ENSMUSG00000066491.5	ENSMUST00000149263.2	231	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	332	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTCAGAATACAAAGAATTC	NA	NA	NA	NA	NA	NA	NA	NA	56420608	56420377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_56420400_56420600
ENSMUST00000149277.8	chr17	-	1388	12	FSM	ENSMUSG00000024426.18	ENSMUST00000149277.8	1388	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGCTACCGACAAAAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	36220949	36208503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_36208808_36209148_36209243_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUST00000149390.2	chr2	+	2338	4	ISM	ENSMUSG00000068040.11	ENSMUST00000089027.3	3896	18	40831	0	40831	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAGGGTGCGGATTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	153044053	153052386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_153044322_153045701_153045822_153046454_153046545_153050526
ENSMUST00000149461.3	chr2	+	477	5	NNC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	21	-794	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGTACTACTCAGCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	145745181	145757551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_+_145745283_145750510_145750536_145753592_145753684_145754286_145754449_145757453
ENSMUST00000149485.2	chr10	-	753	7	NIC	ENSMUSG00000019868.17	novel	1974	8	NA	NA	101	-452	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCAGTGCCCTGCAGTATG	NA	NA	NA	NA	NA	NA	NA	NA	14581203	14531531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_14531590_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14563357_14563453_14581093
ENSMUST00000149487.2	chr9	+	1001	2	FSM	ENSMUSG00000036091.9	ENST00000359051.7	1235	2	5	229	5	-171	multi-exon	FALSE	canonical	NA	NA	NA	NA	815	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCAGCGATGTCATGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	107461950	107463860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_107462865_107463773
ENSMUST00000149514.8	chrX	+	775	3	FSM	ENSMUSG00000086316.9	ENSMUST00000149514.8	775	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTGACCCCTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	152506622	152512184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_152506934_152508700_152508838_152511857
ENSMUST00000149517.2	chr4	-	444	4	NNC	ENSMUSG00000028427.14	novel	2154	6	NA	NA	9138	-428	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTGGCCAGGGAATTCC	NA	NA	NA	NA	NA	NA	NA	NA	41036310	41035134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_41035254_41035492_41035631_41036013_41036138_41036247
ENSMUST00000149558.2	chr4	+	423	3	ISM	ENSMUSG00000023571.5	ENSMUST00000024338.5	1315	8	2243	1447	2243	-1447	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGAGGTCAGGGTACAGG	NA	NA	NA	NA	NA	NA	NA	NA	156049017	156049639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_156049117_156049224_156049346_156049436
ENSMUST00000149565.8	chr8	+	3621	8	FSM	ENSMUSG00000031467.11	ENSMUST00000149565.8	10779	8	2	7156	0	784	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGACATCACTATTTCC	NA	NA	NA	NA	NA	NA	NA	NA	18896294	18934221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_18896795_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18926147_18928022_18928185_18929620_18929745_18931753
ENSMUST00000149566.2	chr1	-	838	6	NNC	ENSMUSG00000043716.14	novel	721	6	NA	NA	435	-40	intron_retention	FALSE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGGCAACAGGGAAGACC	NA	NA	NA	NA	NA	NA	NA	NA	16174451	16172003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_-_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174360
ENSMUST00000149575.8	chr4	-	523	4	ISM	ENSMUSG00000066196.12	ENST00000484764.5	1194	6	964	10	964	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTAATTCATTGATTCT	NA	NA	NA	NA	NA	NA	NA	NA	43652159	43651334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_43651655_43651746_43651792_43651927_43652043_43652116
ENSMUST00000149654.8	chr7	+	604	5	NNC	ENSMUSG00000019738.16	novel	819	6	NA	NA	84	-266	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGCGGCTGGGTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	29931456	29932544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_29931804_29931906_29931962_29932174_29932249_29932331_29932407_29932491
ENSMUST00000149684.2	chr5	+	673	5	ISM	ENSMUSG00000005514.15	ENSMUST00000122113.8	2606	15	42392	1411	42392	-1411	internal_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTAAGGTGAAGGGCACCA	NA	NA	NA	NA	NA	NA	NA	NA	135760403	135762769	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_135760516_135761336_135761454_135761539_135761659_135762355_135762538_135762626
ENSMUST00000149804.2	chr3	+	163	2	ISM	ENSMUSG00000046722.15	ENSMUST00000053872.12	2805	5	78	4518	78	-2649	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTAGGATTTCTACCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	95136120	95139202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_95136177_95139095
ENSMUST00000149841.8	chr8	-	667	6	ISM	ENSMUSG00000031660.14	ENST00000394689.2	2141	17	19125	575	19125	-575	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGGTAGGTGCCCTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	89069462	89059513	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_89059653_89060365_89060510_89060732_89060848_89063708_89063766_89066036_89066149_89069362
ENSMUST00000149940.2	chr11	+	388	3	FSM	ENSMUSG00000085148.2	ENSMUST00000149940.2	1752	3	105	1259	105	-1259	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTGGCCTGGAACCACAA	NA	NA	NA	NA	NA	NA	NA	NA	75352469	75356243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_75352582_75354518_75354684_75356132
ENSMUST00000149949.8	chr10	-	736	5	FSM	ENSMUSG00000051736.9	ENSMUST00000149949.8	736	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGTGATGACAATGGTTG	NA	NA	NA	NA	NA	NA	NA	NA	39009896	38994813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_38995031_38996253_38996393_38998172_38998332_39008242_39008375_39009807
ENSMUST00000149957.2	chr11	-	585	2	ISM	ENSMUSG00000020773.12	ENSMUST00000106441.8	2192	6	3154	457	3154	-457	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCTTCGGAGGCTCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	115997909	115997034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115997468_115997757
ENSMUST00000149966.3	chr5	+	757	8	ISM	ENSMUSG00000029452.19	ENSMUST00000031405.12	1288	10	585	1172	-54	-881	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCACATGGCCCTCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	121601799	121632312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_121601897_121602861_121602926_121605916_121606049_121625812_121625863_121627310_121627395_121629138_121629278_121631693_121631839_121632266
ENSMUST00000149967.9	chr19	+	2305	10	FSM	ENSMUSG00000024663.21	ENSMUST00000149967.9	2305	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGGCAGTGGCCTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	9992407	10012825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_9992650_10003893_10004150_10004747_10004844_10004923_10005002_10005648_10005868_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
ENSMUST00000149985.8	chrX	+	401	4	ISM	ENSMUSG00000031207.17	ENSMUST00000117399.2	3842	13	55	15955	55	-15955	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGAAGAACTGATCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	95139702	95196203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129
ENSMUST00000149989.2	chr17	+	599	2	ISM	ENSMUSG00000071074.10	ENSMUST00000095263.10	2035	9	3261	520	3261	-520	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTAGCTCCTGTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	46562266	46562943	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_46562414_46562491
ENSMUST00000149989.2-0	chr17	+	776	2	ISM	ENSMUSG00000071074.10	ENSMUST00000095263.10	2035	9	3261	343	3261	-343	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	181	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCTATCATGAGAGAATGT	NA	NA	NA	NA	NA	NA	NA	NA	46562266	46563120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_46562414_46562491
ENSMUST00000149992.2	chr8	-	2024	6	FSM	ENSMUSG00000031601.17	ENSMUST00000149992.2	2982	6	1038	-80	1038	80	multi-exon	FALSE	canonical	NA	NA	NA	NA	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAATACACACATATAT	NA	NA	NA	NA	NA	NA	NA	NA	40963307	40945996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055
ENSMUST00000149997.8	chr11	+	554	6	ISM	ENSMUSG00000057098.15	ENSMUST00000109268.2	2864	16	862	361526	862	-361526	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGGACCACTCTTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	44509005	44534296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_44509140_44511240_44511398_44511993_44512058_44512747_44512804_44523577_44523652_44534227
ENSMUST00000150042.8	chr7	-	1654	8	FSM	ENSMUSG00000030706.18	ENSMUST00000150042.8	4285	8	27	2604	27	354	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAATCACCAGCTGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	100232282	100197561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214487_100220458_100220497_100223668_100223722_100232196
ENSMUST00000150049.8	chr7	-	759	4	ISM	ENSMUSG00000025724.13	ENSMUST00000117383.8	1094	7	22130	-284	21804	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTCCCTGAATTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	80575398	80565124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80565653_80565922_80565981_80572848_80572969_80575345
ENSMUST00000150072.2	chr2	+	197	3	ISM	ENSMUSG00000039943.17	ENST00000414679.6	3933	37	105646	25585	105646	-25183	internal_fragment	FALSE	canonical	NA	NA	NA	NA	309	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAGAAACATGCAAAGGTA	NA	NA	NA	NA	NA	NA	NA	NA	135824948	135829805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_135825047_135829399_135829450_135829756
ENSMUST00000150108.8	chr1	-	662	6	NNC	ENSMUSG00000013593.13	novel	1545	12	NA	NA	9594	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	171065097	171062421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065038
ENSMUST00000150145.2	chr2	+	1905	2	FSM	ENSMUSG00000085704.2	ENSMUST00000150145.2	1905	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	179618645	179620806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_179618986_179619241
ENSMUST00000150171.2	chr4	+	459	2	FSM	ENSMUSG00000087575.8	ENSMUST00000150171.2	459	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTTCTGCAGGTGTCAA	NA	NA	NA	NA	NA	NA	NA	NA	129157522	129158803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_129157718_129158539
ENSMUST00000150204.8	chr4	-	935	7	FSM	ENSMUSG00000033379.14	ENSMUST00000150204.8	935	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCAGTGAGGCTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	117744517	117741529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117744366
ENSMUST00000150268.8	chr3	+	1851	15	FSM	ENSMUSG00000027998.12	ENSMUST00000150268.8	1851	15	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGCATGTTGAGGATTG	NA	NA	NA	NA	NA	NA	NA	NA	82962828	82979662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
ENSMUST00000150290.9	chr14	+	782	6	FSM	ENSMUSG00000050335.18	ENSMUST00000150290.9	1298	6	27	489	27	-195	multi-exon	TRUE	canonical	NA	NA	NA	NA	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAGAACCTCCGGGAAAT	NA	NA	NA	NA	NA	NA	NA	NA	47611372	47623056	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_47611437_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
ENSMUST00000150320.3	chr2	+	480	2	ISM	ENSMUSG00000047909.12	ENSMUST00000056108.12	1618	7	81	10500	81	-10500	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGCTCACTGTCTGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	11783382	11784636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_11783714_11784487
ENSMUST00000150324.8	chr17	-	1267	8	FSM	ENSMUSG00000061046.10	ENSMUST00000150324.8	1267	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTGTGGTACCAGACAC	NA	NA	NA	NA	NA	NA	NA	NA	26004312	26001798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977
ENSMUST00000150336.8	chr11	-	1605	8	FSM	ENSMUSG00000005267.14	ENSMUST00000150336.8	1605	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATATTTCTGAGCAATGCC	NA	NA	NA	NA	NA	NA	NA	NA	62622711	62591181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_62591453_62596294_62596418_62602975_62603046_62615622_62615710_62616073_62616201_62618375_62618480_62619107_62619712_62622492
ENSMUST00000150350.9	chr7	-	1047	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATGTGTGCTGTGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	44778185	44774981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ENSMUST00000150371.8	chr14	-	2494	13	FSM	ENSMUSG00000022185.20	ENSMUST00000150371.8	2494	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATTTGAGTGCCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	54891139	54879623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890670_54890736_54890991
ENSMUST00000150429.8	chr1	+	1398	8	ISM	ENSMUSG00000026504.18	ENSMUST00000027785.15	2776	18	0	174940	0	-16630	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCTCTGTAGCTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	176642225	176673063	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_176642622_176652317_176652471_176653764_176653851_176656435_176656550_176658622_176658749_176667850_176667992_176672389_176672455_176672746
ENSMUST00000150444.2	chr8	-	831	5	ISM	ENSMUSG00000031823.15	ENSMUST00000034280.9	3069	8	14647	1513	14647	-1513	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTGTGTACTGCCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	120813574	120809141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_120809456_120809968_120810100_120811582_120811665_120812083_120812181_120813367
ENSMUST00000150450.2	chr2	+	952	3	FSM	ENSMUSG00000087473.8	ENSMUST00000150450.2	1404	3	0	452	0	-452	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGCCATGCTGCTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	104087016	104105650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_104087279_104088541_104089022_104105440
ENSMUST00000150476.3	chr7	-	867	7	NNC	ENSMUSG00000030741.16	novel	2017	11	NA	NA	-89	-2672	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTTCACCCTTTCCATC	NA	NA	NA	NA	NA	NA	NA	NA	125976379	125971916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008_125976218_125976289
ENSMUST00000150500.8	chr17	+	516	5	NNC	ENSMUSG00000073435.11	novel	715	5	NA	NA	-1	4	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCAGTCAGCATTACCA	NA	NA	NA	NA	NA	NA	NA	NA	25115478	25116309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_+_25115534_25115608_25115733_25115825_25115928_25116001_25116115_25116187
ENSMUST00000150545.8	chr2	-	1299	5	NNC	ENSMUSG00000027472.15	novel	1273	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGTTGTCACCCACC	NA	NA	NA	NA	NA	NA	NA	NA	152857347	152850809	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_-_152851657_152852177_152852259_152854300_152854376_152855929_152856006_152857127
ENSMUST00000150571.2	chr2	+	2151	8	FSM	ENSMUSG00000017999.17	ENSMUST00000150571.2	2151	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATAGTATTATTTCCCAT	NA	NA	NA	NA	NA	NA	NA	NA	166857229	166867733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303
ENSMUST00000150576.8	chr9	+	337	4	FSM	ENSMUSG00000048758.15	ENSMUST00000150576.8	733	4	0	396	0	-336	multi-exon	FALSE	canonical	NA	NA	NA	NA	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCCATCAAGGCCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	106306652	106308371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_106306776_106307168_106307214_106307506_106307572_106308267
ENSMUST00000150602.2	chr2	+	788	4	FSM	ENSMUSG00000047459.15	ENSMUST00000150602.2	788	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGAATCAGTTCGCCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	155078527	155092055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_155078857_155084650_155084727_155089690_155089859_155091840
ENSMUST00000150627.11	chr19	+	812	6	FSM	ENSMUSG00000024845.20	ENSMUST00000150627.11	1472	6	0	660	0	-80	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGTGCCTTAACTTATT	NA	NA	NA	NA	NA	NA	NA	NA	4175959	4181646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181227_4181282_4181360
ENSMUST00000150740.2	chr7	-	249	2	ISM	ENSMUSG00000062797.15	ENSMUST00000075010.12	715	6	17307	1175	17307	-1175	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAAATGTGGTTCTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	89572923	89569302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_89569400_89572771
ENSMUST00000150749.2	chr1	-	711	2	FSM	ENSMUSG00000087213.3	ENSMUST00000150749.2	711	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACAGTGCTACCTATGT	NA	NA	NA	NA	NA	NA	NA	NA	64729818	64719029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_64719545_64729622
ENSMUST00000150795.8	chr12	+	637	4	FSM	ENSMUSG00000044456.17	ENSMUST00000150795.8	937	4	0	300	0	-300	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGAAATTCAGCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	102249426	102292744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_102249586_102279233_102279442_102292053_102292172_102292592
ENSMUST00000150844.3	chr7	-	1450	9	FSM	ENSMUSG00000030929.18	ENSMUST00000150844.3	3564	9	0	2114	0	-2114	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGAAGAACCAGAAACCCT	NA	NA	NA	NA	NA	NA	NA	NA	119393281	119385167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_119385768_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391572_119391653_119391722_119393140
ENSMUST00000150885.8	chr4	-	781	4	NNC	ENSMUSG00000028669.16	novel	1700	6	NA	NA	1326	-606	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTCAAAAAGGATGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	135713249	135703376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_135703808_135704459_135704569_135706107_135706213_135713113
ENSMUST00000150911.8	chr1	-	960	6	FSM	ENSMUSG00000026049.12	ENSMUST00000150911.8	960	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACGGTTGGTTAATTTGA	NA	NA	NA	NA	NA	NA	NA	NA	44141601	44126020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141487
ENSMUST00000150944.2	chr12	+	426	3	ISM	ENSMUSG00000020654.16	ENSMUST00000020984.9	4348	21	60668	16620	60668	-16620	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGTGGCATCCCAGGGT	NA	NA	NA	NA	NA	NA	NA	NA	4244820	4246904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_4244978_4245131_4245260_4246763
ENSMUST00000150953.2	chr9	+	4325	2	FSM	ENSMUSG00000086296.3	ENSMUST00000150953.2	4325	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTAATTGGACGACTTG	NA	NA	NA	NA	NA	NA	NA	NA	106032150	106036950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_106033717_106034191
ENSMUST00000150974.2	chr4	-	761	3	NIC	ENSMUSG00000034785.16	novel	1690	4	NA	NA	-17	12	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	2821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGAAATAAAGCAATGCTG	NA	NA	NA	NA	NA	NA	NA	NA	107164339	107149363	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_107149620_107154793_107154938_107163978
ENSMUST00000150995.8	chr15	-	566	4	FSM	ENSMUSG00000064284.13	ENSMUST00000150995.8	566	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTGTATCCAGCTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	85695898	85691457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695839
ENSMUST00000151032.2	chr11	+	1075	4	FSM	ENSMUSG00000086391.2	ENSMUST00000151032.2	1075	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGTAAATATTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	11818122	11835321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_11818200_11820963_11821157_11832956_11833080_11834639
ENSMUST00000151120.9	chr7	-	2127	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGTGTGCTCTGTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	141941775	141929647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
ENSMUST00000151124.8	chr11	-	1808	12	NIC	ENSMUSG00000020865.17	novel	1797	12	NA	NA	0	4	intron_retention	TRUE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTTTGTGTCCCTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	94283746	94255680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_94256056_94258415_94258509_94259006_94259169_94259266_94259445_94262444_94262634_94263698_94263831_94264452_94264515_94264734_94264861_94265547_94265686_94265892_94266019_94266366_94266544_94283696
ENSMUST00000151162.2	chr2	+	559	2	ISM	ENSMUSG00000040007.9	ENST00000561234.5	4534	7	179	8148	179	-8148	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGGTCCTGGTCTTTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	118730857	118746857	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_118730928_118746368
ENSMUST00000151166.2	chrX	+	783	3	FSM	ENSMUSG00000086629.9	ENSMUST00000151166.2	1107	3	0	324	0	-120	multi-exon	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACCAACTATTGTGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	107878300	107918256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_107878611_107879871_107879962_107917873
ENSMUST00000151200.8	chrX	+	1001	5	ISM	ENSMUSG00000025260.11	ENSMUST00000026289.10	962	6	304	0	-127	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGCAGTCTTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	150785144	150787438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_150785439_150786356_150786522_150786648_150786778_150786857_150786967_150787134
ENSMUST00000151228.2	chr11	+	994	2	FSM	ENSMUSG00000046311.14	ENST00000502412.2	3608	2	20	2594	8	-2529	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGGTGATAAACCTTATA	NA	NA	NA	NA	NA	NA	NA	NA	49094332	49106851	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_49094366_49105890
ENSMUST00000151238.8	chr4	-	600	5	NNC	ENSMUSG00000028470.11	novel	610	5	NA	NA	23	2	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTATCCCTGTCTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	43656443	43654226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_43654423_43654512_43654586_43654715_43654821_43654905_43655047_43656358
ENSMUST00000151239.2	chr2	-	592	5	NIC	ENSMUSG00000047617.12	novel	981	7	NA	NA	63	-333	combination_of_known_splicesites	TRUE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCCAGGGGAGTCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	25351043	25349826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_25349872_25350178_25350370_25350456_25350507_25350666_25350728_25350798
ENSMUST00000151254.2	chr7	+	1430	5	NNC	ENSMUSG00000030663.13	novel	1479	5	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	115692600	115704445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_115692761_115698674_115698759_115701178_115701240_115702429_115702556_115703446
ENSMUST00000151266.8	chr16	+	1086	5	FSM	ENSMUSG00000003531.16	ENSMUST00000151266.8	1086	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCTTTCCTAGTGACTCT	NA	NA	NA	NA	NA	NA	NA	NA	17884266	17889227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_17884464_17884559_17884721_17887287_17887389_17887954_17888096_17888741
ENSMUST00000151307.8	chr19	+	3687	4	FSM	ENSMUSG00000024691.14	ENSMUST00000151307.8	3687	4	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCTGTTTTCTTTAGTTA	NA	NA	NA	NA	NA	NA	NA	NA	12545561	12567124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_12546192_12550894_12550945_12554453_12554535_12564198
ENSMUST00000151319.8	chr15	-	747	5	NNC	ENSMUSG00000037458.16	novel	4871	12	NA	NA	1101	-9052	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGTATGCCGAAGTAC	NA	NA	NA	NA	NA	NA	NA	NA	38518406	38498912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_-_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38518340
ENSMUST00000151374.2	chr4	-	426	3	FSM	ENSMUSG00000085241.8	ENSMUST00000151374.2	426	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTGATTTAATGTG	NA	NA	NA	NA	NA	NA	NA	NA	132080944	132079244	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_132079555_132079930_132080010_132080907
ENSMUST00000151376.3	chr9	+	651	4	FSM	ENSMUSG00000091028.2	ENSMUST00000151376.3	651	4	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTCCATGTCCCACAGT	NA	NA	NA	NA	NA	NA	NA	NA	3000921	3002330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_3000958_3000961_3001445_3002049_3002057_3002205
ENSMUST00000151390.8	chr10	+	2614	10	FSM	ENSMUSG00000034674.19	ENSMUST00000151390.8	3502	10	17	871	17	-396	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCTGTCTGGGTCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	82465709	82485762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_82465873_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484411
ENSMUST00000151401.11	chr19	+	800	5	FSM	ENSMUSG00000024845.20	ENSMUST00000151401.11	800	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	NA	NA	NA	NA	NA	NA	NA	NA	4175974	4181726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4181227_4181282_4181360
ENSMUST00000151418.2	chr15	-	966	3	ISM	ENSMUSG00000036606.18	ENSMUST00000060808.10	6394	36	13642	0	13642	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTGACTGGGTTTCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	89041249	89039751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_89040589_89040700_89040776_89041195
ENSMUST00000151678.8	chr11	-	4084	3	FSM	ENSMUSG00000003518.14	ENSMUST00000151678.8	4084	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGTCTGTTTTGTGTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	101874329	101861968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_101865766_101872442_101872670_101874269
ENSMUST00000151702.8	chrX	+	648	7	NNC	ENSMUSG00000008682.14	novel	799	7	NA	NA	-3	-110	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGTGGTCCTCTGGACAA	NA	NA	NA	NA	NA	NA	NA	NA	73314462	73316631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chrX_+_73314485_73314584_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
ENSMUST00000151708.3	chr1	-	491	4	FSM	ENSMUSG00000026385.17	ENSMUST00000151708.3	491	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAATGTAGATGATATGG	NA	NA	NA	NA	NA	NA	NA	NA	120048667	120041129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_120041264_120044115_120044179_120047624_120047743_120048491
ENSMUST00000151826.2	chr2	+	437	2	FSM	ENSMUSG00000042854.10	ENSMUST00000151826.2	4426	2	0	3989	0	1128	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACCTGGCCAGGAGGATG	NA	NA	NA	NA	NA	NA	NA	NA	166635686	166637436	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_166635989_166637301
ENSMUST00000151838.8	chr4	-	744	6	NNC	ENSMUSG00000028795.16	novel	879	6	NA	NA	41	-2	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTACTCGGTGCTCTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	129517630	129513068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_129513240_129514249_129514273_129514475_129514647_129514776_129514944_129516392_129516581_129517606
ENSMUST00000151878.2	chr9	-	694	7	NNC	ENSMUSG00000031922.13	novel	2523	11	NA	NA	-223	-2536	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAGTCAGTGGTGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	13730205	13722015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_-_13722159_13723928_13724007_13724705_13724811_13727350_13727429_13728182_13728300_13729618_13729741_13730154
ENSMUST00000151953.2	chr2	+	492	2	FSM	ENSMUSG00000005232.12	ENST00000421979.1	492	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGTTCCTTCGGAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	69050371	69057180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_69050595_69056911
ENSMUST00000151958.2	chr6	-	985	3	ISM	ENSMUSG00000036390.9	ENSMUST00000043098.9	1223	4	327	0	172	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATTTCTCAACGTGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	67014063	67012079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_67012757_67013661_67013900_67013993
ENSMUST00000151961.2	chr4	-	792	3	NNC	ENSMUSG00000029073.10	novel	2662	3	NA	NA	622	-1643	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCCTAGGCGTGGACTTA	NA	NA	NA	NA	NA	NA	NA	NA	155953275	155950822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_155951343_155951569_155951795_155953228
ENSMUST00000152070.2	chr16	+	527	2	FSM	ENSMUSG00000085781.2	ENSMUST00000152070.2	527	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGAGAGAGACCTGGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	45756685	45759642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_45756792_45759221
ENSMUST00000152073.2	chr11	+	790	2	FSM	ENSMUSG00000087507.2	ENSMUST00000152073.2	790	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGAGTCTCGAGCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	18963816	18965154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_18963998_18964545
ENSMUST00000152098.8	chr4	-	952	6	FSM	ENSMUSG00000055401.15	ENSMUST00000168503.8	1240	6	-5	293	-5	-221	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTAGTAATCGGAAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	148236597	148230465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236469
ENSMUST00000152109.2	chrX	-	698	3	FSM	ENSMUSG00000087365.8	ENSMUST00000152109.2	698	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAAAGAAATGGATGAA	NA	NA	NA	NA	NA	NA	NA	NA	52146065	52144646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_52145042_52145534_52145647_52145874
ENSMUST00000152142.8	chr11	+	378	3	ISM	ENSMUSG00000020895.15	ENSMUST00000075980.12	779	5	48	1527	43	-1527	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGACTCATCCCAGTTACC	NA	NA	NA	NA	NA	NA	NA	NA	68961679	68962329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_68961860_68962049_68962118_68962199
ENSMUST00000152147.8-1	chr6	+	1827	3	FSM	ENSMUSG00000073155.13	ENSMUST00000152147.8	2521	3	0	694	0	-694	multi-exon	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAGACCAGGCTGGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	35229588	35239737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_35229718_35237344_35237399_35238093
ENSMUST00000152168.8	chr8	-	695	6	NNC	ENSMUSG00000031617.17	novel	2678	10	NA	NA	-45	-6884	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCACTGTAAGTAGGACT	NA	NA	NA	NA	NA	NA	NA	NA	78337327	78329494	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_-_78329562_78331250_78331457_78332792_78332830_78332915_78333047_78336731_78336949_78337290
ENSMUST00000152171.8	chr11	+	563	3	FSM	ENSMUSG00000048442.16	ENSMUST00000152171.8	1113	3	236	314	0	-4	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTGTTGCCCCATCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	115791027	115796781	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_115791169_115795980_115796129_115796507
ENSMUST00000152178.2	chr2	+	1876	6	ISM	ENSMUSG00000036202.17	ENST00000430328.6	7466	34	38999	-2	38999	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATGCATATTTTGGTATA	NA	NA	NA	NA	NA	NA	NA	NA	52002144	52011485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_52003013_52006259_52006407_52006846_52006963_52009028_52009183_52010271_52010381_52011003
ENSMUST00000152208.8	chr1	+	1105	10	FSM	ENSMUSG00000026418.17	ENSMUST00000152208.8	1105	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	135727139	135738727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_135727235_135727710_135727759_135730331_135730362_135731019_135731024_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
ENSMUST00000152286.2	chr13	+	465	3	FSM	ENSMUSG00000021643.16	ENSMUST00000152286.2	465	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTATTGGTGAATATTA	NA	NA	NA	NA	NA	NA	NA	NA	100244903	100250739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_100244993_100245530_100245640_100250472
ENSMUST00000152292.2	chr13	-	557	3	FSM	ENSMUSG00000069223.11	ENSMUST00000152292.2	557	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAACGTTTTCTGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	55932318	55923759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_55924124_55931694_55931807_55932237
ENSMUST00000152298.2	chr5	+	476	2	NIC	ENSMUSG00000029725.11	novel	956	4	NA	NA	640	0	intron_retention	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	137777805	137778372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_+_137778025_137778115
ENSMUST00000152313.2	chr2	+	1465	2	FSM	ENSMUSG00000045464.6	ENSMUST00000152313.2	2040	2	0	575	0	-575	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGCAAGAGCAGTACCAT	NA	NA	NA	NA	NA	NA	NA	NA	94236495	94241452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_94237312_94240803
ENSMUST00000152358.8	chrX	-	2525	17	ISM	ENSMUSG00000031012.18	ENSMUST00000033321.11	4057	25	-22	33253	0	-32802	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAGACAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	13712817	13420822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_13421186_13423230_13423317_13425558_13425638_13427753_13427943_13434714_13434796_13437272_13437351_13453082_13453205_13466595_13466696_13474972_13475057_13480708_13480832_13486888_13487065_13492433_13492537_13543823_13543897_13549209_13549288_13580904_13581011_13652175_13652289_13712246
ENSMUST00000152410.8	chr7	-	627	5	NNC	ENSMUSG00000030960.17	novel	1107	6	NA	NA	1	-3751	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACCGTTTTGAATGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	132454344	132433088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_132433306_132438828_132438937_132452319_132452439_132453154_132453221_132454227
ENSMUST00000152471.2	chr2	+	1243	2	FSM	ENSMUSG00000050373.14	ENSMUST00000152471.2	1243	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	164627936	164629552	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_164628245_164628617
ENSMUST00000152519.8	chr2	-	600	7	ISM	ENSMUSG00000039128.14	ENST00000378900.6	875	11	-19	15169	-19	-15169	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGTAGTCTAATTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	5849752	5815528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
ENSMUST00000152555.8	chr13	-	1877	9	FSM	ENSMUSG00000021687.15	ENSMUST00000152555.8	1877	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATTTTGGGTTCTGTACT	NA	NA	NA	NA	NA	NA	NA	NA	94422365	94339881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_94340672_94344643_94344762_94347084_94347187_94361402_94361563_94366221_94366351_94368579_94368689_94369589_94369689_94389500_94389579_94422073
ENSMUST00000152613.2	chr5	-	364	3	NNC	ENSMUSG00000041740.17	novel	3106	17	NA	NA	22926	-6914	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCACCCTGTCAACGTGCG	NA	NA	NA	NA	NA	NA	NA	NA	115387546	115386751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_115386769_115386973_115387230_115387455
ENSMUST00000152622.2	chr3	+	664	3	ISM	ENSMUSG00000027997.10	ENSMUST00000029626.9	1456	7	9037	502	9037	-502	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACATTTCCCTTTTTATA	NA	NA	NA	NA	NA	NA	NA	NA	129704110	129707250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_129704348_129705766_129705924_129706980
ENSMUST00000152701.2	chr4	+	841	5	ISM	ENSMUSG00000006442.11	ENSMUST00000006611.9	1338	7	415	420	415	-420	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAAGGTGAGTGGCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	148676374	148678656	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_148676622_148676938_148677032_148677744_148677899_148678224_148678455_148678539
ENSMUST00000152703.2	chr7	-	836	6	FSM	ENSMUSG00000037613.17	ENSMUST00000152703.2	1476	6	1	639	0	180	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGATCTGCAAGCAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	143239608	143221989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_143222330_143223718_143223793_143224568_143224681_143233681_143233811_143235196_143235288_143239518
ENSMUST00000152724.2	chr17	+	1443	5	ISM	ENSMUSG00000090115.8	ENST00000373010.5	2029	6	22771	-165	22771	165	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	136	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCTTCTATGAAGATCC	NA	NA	NA	NA	NA	NA	NA	NA	47983644	47991981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_47984344_47985640_47985846_47989768_47989878_47990588_47990644_47991606
ENSMUST00000152724.2-0	chr17	+	1279	5	ISM	ENSMUSG00000090115.8	ENST00000373010.5	2029	6	22771	-1	22771	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	209	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCTCCAGGTCTCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	47983644	47991817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_47984344_47985640_47985846_47989768_47989878_47990588_47990644_47991606
ENSMUST00000152784.8	chr11	-	686	3	FSM	ENSMUSG00000085175.8	ENSMUST00000152784.8	686	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTCATTATGTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	82671868	82670426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_82670762_82670960_82671125_82671681
ENSMUST00000152790.8	chr11	-	714	4	FSM	ENSMUSG00000087165.8	ENSMUST00000152790.8	714	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTTGTCTCAGTGATT	NA	NA	NA	NA	NA	NA	NA	NA	57692243	57686324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_57686621_57686851_57687000_57687137_57687224_57692059
ENSMUST00000152844.2	chr1	+	1912	6	ISM	ENSMUSG00000055567.19	ENST00000272845.10	13297	63	211286	2482	211252	1067	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTTGAAAGGCTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	66718857	66735822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_66718903_66722307_66722447_66731666_66731749_66732850_66732963_66733523_66733724_66734488
ENSMUST00000152844.2-0	chr1	+	2448	6	ISM	ENSMUSG00000055567.19	ENST00000272845.10	13297	63	211286	1946	211252	1603	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACCTTCTCTGTGTTATA	NA	NA	NA	NA	NA	NA	NA	NA	66718857	66736358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_66718903_66722307_66722447_66731666_66731749_66732850_66732963_66733523_66733724_66734488
ENSMUST00000152868.2	chr16	+	416	2	NNC	ENSMUSG00000046516.11	novel	444	3	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAAGAAAATATGCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	38167357	38173103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr16_+_38167658_38172987
ENSMUST00000152916.2	chrX	+	736	4	FSM	ENSMUSG00000085715.3	ENSMUST00000152916.2	4306	4	0	3570	0	-1019	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGCAGGCACTTCGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	102475122	102524993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_102475308_102491249_102491578_102491810_102491921_102524880
ENSMUST00000152936.8	chr19	-	604	4	FSM	ENSMUSG00000016495.13	ENSMUST00000152936.8	604	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAAATTTCTCGTGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	29339273	29326076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_29326406_29335716_29335804_29338216_29338328_29339196
ENSMUST00000152938.9	chr8	-	785	6	FSM	ENSMUSG00000048967.17	ENSMUST00000152938.9	785	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGCCTCTTTTGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	70346625	70340437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_70340673_70341636_70341788_70341858_70341973_70342092_70342204_70343515_70343625_70346560
ENSMUST00000152941.2	chr2	-	1198	4	FSM	ENSMUSG00000078897.11	ENSMUST00000152941.2	1198	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTCTTCCTGTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	175277575	175265685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_175266617_175266821_175266949_175273972_175274028_175277490
ENSMUST00000152954.8	chr18	+	1966	13	FSM	ENSMUSG00000019143.16	ENSMUST00000152954.8	3336	13	261	1109	38	-241	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCACCATTGAAATGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	36916321	36924506	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36922419_36922663_36923186_36923304_36923521_36923669_36924122
ENSMUST00000152993.8	chr4	-	243	2	FSM	ENSMUSG00000054428.13	ENSMUST00000152993.8	462	2	100	119	100	-119	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCGGTCCCTCACAGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	132260699	132257984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_132258135_132260606
ENSMUST00000153038.8	chr11	+	494	4	ISM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	92	8973	4	-7919	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCAGCAGAGAACAGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	75623786	75647698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642
ENSMUST00000153115.8	chr1	-	2208	3	FSM	ENSMUSG00000044768.17	ENSMUST00000153115.8	3495	3	810	477	102	-475	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGTTAGCAGTCTTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	97588591	97572104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_97574087_97582324_97582415_97588455
ENSMUST00000153275.2	chr16	-	356	2	ISM	ENSMUSG00000033918.17	ENSMUST00000048642.15	1348	10	26	18304	26	-18304	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGGCCACTGCTATTGTA	NA	NA	NA	NA	NA	NA	NA	NA	20121111	20116873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_20117077_20120958
ENSMUST00000153302.8	chr5	-	1582	9	NNC	ENSMUSG00000035234.19	novel	1657	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAATATCTTATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	100968806	100953057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_100953318_100953763_100954356_100954644_100954757_100957419_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100968696
ENSMUST00000153405.3	chr11	+	917	5	FSM	ENSMUSG00000020812.19	ENSMUST00000153405.3	1151	5	11	223	7	-223	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGAGTCATCAGACGACC	NA	NA	NA	NA	NA	NA	NA	NA	116562513	116566396	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_116562583_116562989_116563565_116564763_116564898_116565125_116565202_116566333
ENSMUST00000153451.9	chr7	+	604	5	NNC	ENSMUSG00000040952.17	novel	633	6	NA	NA	15	-852	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCTGGACAGGTGAGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	24584075	24588375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_24584280_24584560_24584632_24584876_24584978_24587706_24587891_24588331
ENSMUST00000153474.9	chr4	+	606	5	FSM	ENSMUSG00000086290.10	ENSMUST00000153474.9	606	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	NA	NA	NA	NA	NA	NA	NA	132035988	132038335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_132036219_132037148_132037215_132037461_132037527_132037761_132037816_132038144
ENSMUST00000153506.8	chr3	-	1005	7	FSM	ENSMUSG00000027994.15	ENSMUST00000153506.8	1005	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTATTCATTGACAACCG	NA	NA	NA	NA	NA	NA	NA	NA	129763725	129708630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_129708836_129709351_129709469_129710587_129710792_129720013_129720119_129727231_129727403_129728273_129728350_129763598
ENSMUST00000153528.8	chr8	+	1026	7	FSM	ENSMUSG00000013878.19	ENSMUST00000153528.8	1026	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAAGGATCCATGGCA	NA	NA	NA	NA	NA	NA	NA	NA	26609410	26631152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_26609629_26610467_26610592_26615931_26616008_26619074_26619184_26625656_26625731_26629007_26629119_26630838
ENSMUST00000153581.2	chr2	+	1210	3	FSM	ENSMUSG00000085438.2	ENSMUST00000153581.2	8300	3	0	7090	0	-7090	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGCTCAAAACCAGTAGG	NA	NA	NA	NA	NA	NA	NA	NA	119424783	119430893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_119424916_119426739_119426993_119430068
ENSMUST00000153583.3	chr5	+	499	1	FSM	ENSMUSG00000051116.7	ENSMUST00000153583.3	499	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTATTTATTGATTACTG	NA	NA	NA	NA	NA	NA	NA	NA	57765910	57766409	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_57765900_57766400
ENSMUST00000153620.3	chrX	+	830	5	FSM	ENSMUSG00000031156.19	ENST00000376529.8	837	5	14	-7	14	-4	multi-exon	FALSE	canonical	NA	NA	NA	NA	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTTGGGTTGGAAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	7750585	7760699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758968_7759107_7760429
ENSMUST00000153627.8	chr12	+	2036	16	FSM	ENSMUSG00000021177.17	ENSMUST00000153627.8	2036	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTACAGGCCTGGAATGA	NA	NA	NA	NA	NA	NA	NA	NA	99850795	99921478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
ENSMUST00000153670.2	chr12	+	527	3	ISM	ENSMUSG00000064215.14	ENSMUST00000085065.12	977	7	3368	0	3368	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCATTGTTCCCCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	103403885	103406498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_103403965_103405659_103405822_103406212
ENSMUST00000153684.8	chr11	+	1797	5	FSM	ENSMUSG00000018572.11	ENSMUST00000153684.8	1797	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTCCTTGTCCTATTTG	NA	NA	NA	NA	NA	NA	NA	NA	69887816	69890834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69887886_69888422_69888455_69888571_69888665_69889126_69889959_69890063
ENSMUST00000153685.2	chr13	-	1804	5	FSM	ENSMUSG00000086693.2	ENSMUST00000153685.2	1804	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCATAAGTATTTCATGAT	NA	NA	NA	NA	NA	NA	NA	NA	41154627	41109889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_41111126_41111736_41111836_41112460_41112623_41113403_41113625_41154541
ENSMUST00000153700.9	chr9	+	1843	6	FSM	ENSMUSG00000040652.17	ENSMUST00000153700.9	1843	6	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTCTGTCTTTTTATTC	NA	NA	NA	NA	NA	NA	NA	NA	65583829	65597582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_65584048_65593477_65593554_65593554_65593636_65595079_65595256_65596102_65596189_65596376
ENSMUST00000153748.2	chr8	+	1394	5	FSM	ENSMUSG00000071796.14	ENSMUST00000153748.2	4659	5	0	3265	0	-3265	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGTGGCAGAAAAACCCAC	NA	NA	NA	NA	NA	NA	NA	NA	20143847	20169729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_20143957_20157802_20158000_20163109_20163409_20167037_20167158_20169060
ENSMUST00000153786.2	chr6	-	544	3	FSM	ENSMUSG00000086021.2	ENSMUST00000153786.2	544	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCATATCATGAGAGATTA	NA	NA	NA	NA	NA	NA	NA	NA	147145299	147144024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_147144363_147144498_147144542_147145136
ENSMUST00000153817.8	chr4	+	412	2	FSM	ENSMUSG00000087575.8	ENSMUST00000153817.8	412	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTTCTGCAGGTGTCAA	NA	NA	NA	NA	NA	NA	NA	NA	129155757	129158803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_129155906_129158539
ENSMUST00000153840.2	chr7	+	596	5	FSM	ENSMUSG00000054893.16	ENSMUST00000153840.2	596	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCGTGTCTCTCAGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	6289591	6303958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_6289654_6292356_6292437_6293534_6293662_6296847_6296941_6303724
ENSMUST00000153871.2	chr14	-	1983	7	FSM	ENSMUSG00000044551.14	ENSMUST00000153871.2	1983	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGACTGTTAAATGACC	NA	NA	NA	NA	NA	NA	NA	NA	70396951	70391853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_70392726_70393298_70393403_70393609_70393726_70393864_70393968_70394107_70394249_70394627_70395104_70396780
ENSMUST00000153889.8	chr5	-	573	7	ISM	ENSMUSG00000040537.18	ENSMUST00000088761.11	9077	31	251377	9791	250758	-3547	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGCAACTCCTCTGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	8166605	8132142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_8132270_8142339_8142407_8142730_8142832_8145072_8145181_8157001_8157020_8161894_8161986_8166544
ENSMUST00000153890.2	chrX	-	1119	1	FSM	ENSMUSG00000046993.7	ENSMUST00000153890.2	1119	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCTGGGAGGGAGGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	59091589	59090470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_59090500_59091600
ENSMUST00000153892.2	chr11	-	1051	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	115427102	115413927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
ENSMUST00000153941.8	chr12	+	2270	5	FSM	ENSMUSG00000044712.16	ENSMUST00000153941.8	3927	5	13	1644	-10	694	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAGTCAGGTGGGTTACG	NA	NA	NA	NA	NA	NA	NA	NA	73333681	73359650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_73333807_73335166_73335298_73338933_73339008_73356918_73356972_73357763
ENSMUST00000153945.3	chr18	-	1050	7	ISM	ENSMUSG00000024454.17	ENSMUST00000043498.9	2032	15	11301	152	11301	-152	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTTTACTGTTTTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	38076768	38070176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730
ENSMUST00000153983.8	chr11	+	1269	6	FSM	ENSMUSG00000018858.16	ENSMUST00000153983.8	2596	6	70	1257	52	498	multi-exon	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAGTATCAGGTGAGGTA	NA	NA	NA	NA	NA	NA	NA	NA	115294647	115302243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_115294787_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
ENSMUST00000153995.2	chr11	-	864	6	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	630	-1900	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	119	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCGCAGGCAACCTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	5827662	5824079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5827579
ENSMUST00000154032.2	chr15	-	2456	11	FSM	ENSMUSG00000036966.16	ENSMUST00000154032.2	2456	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACGGAAGGGGAATCCTT	NA	NA	NA	NA	NA	NA	NA	NA	102044669	102024962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_102026149_102026475_102026649_102026726_102026847_102027362_102027421_102027702_102027853_102036973_102037160_102038712_102038849_102039100_102039226_102040302_102040379_102041850_102041998_102044570
ENSMUST00000154034.8	chr11	+	1050	6	NIC	ENSMUSG00000061878.17	novel	2527	6	NA	NA	343	-662	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGACTTCGTCCTGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	116424093	116426821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_116424195_116424795_116425000_116425677_116425828_116425905_116426001_116426077_116426194_116426437
ENSMUST00000154043.8	chr12	-	1929	9	FSM	ENSMUSG00000021224.16	ENSMUST00000154043.8	1929	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTCTCTGTGACAGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	83889117	83842212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83878695_83878771_83888991
ENSMUST00000154043.8-0	chr12	-	1774	9	FSM	ENSMUSG00000021224.16	ENSMUST00000154043.8	1929	9	0	155	0	-155	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGCATGCAGAAGTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	83889117	83842367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83878695_83878771_83888991
ENSMUST00000154111.8	chr2	-	2293	9	FSM	ENSMUSG00000078919.11	ENSMUST00000154111.8	2293	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATAATGTTATCGAATTGT	NA	NA	NA	NA	NA	NA	NA	NA	168072299	168050967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ENSMUST00000154129.8	chr1	-	332	2	ISM	ENSMUSG00000073616.11	ENSMUST00000112999.8	653	3	805	0	805	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	NA	NA	NA	NA	NA	NA	NA	92567481	92564866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_92565126_92567408
ENSMUST00000154156.2	chr11	-	784	2	Genic_Genomic	ENSMUSG00000069899.4	novel	958	1	NA	NA	-10	-14	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	45943148	45942194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr11_-_45942889_45943058
ENSMUST00000154166.8	chr17	+	2490	4	FSM	ENSMUSG00000023960.14	ENSMUST00000154166.8	2490	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTTTTGTTTTGCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	44389703	44397458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_44389790_44391537_44392402_44393634_44393812_44396095
ENSMUST00000154208.8	chr4	+	1187	6	FSM	ENSMUSG00000066026.15	ENSMUST00000154208.8	2337	6	142	1008	142	-441	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGGGGAGGACATAGAG	NA	NA	NA	NA	NA	NA	NA	NA	144619788	144653771	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_144620280_144645220_144645365_144645954_144646075_144646410_144646650_144650475_144650602_144653704
ENSMUST00000154288.3	chr14	+	450	4	ISM	ENSMUSG00000035960.15	ENSMUST00000049411.12	1239	5	317	655	317	-655	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTGTGGCTGAATTTGA	NA	NA	NA	NA	NA	NA	NA	NA	51162741	51163941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_51162782_51162973_51163162_51163617_51163811_51163912
ENSMUST00000154406.8	chr2	+	479	4	ISM	ENSMUSG00000014077.14	ENSMUST00000119172.2	3027	6	0	15120	0	-15120	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGAGCATCGTCGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	119378201	119402376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_119378399_119391211_119391285_119397130_119397212_119402248
ENSMUST00000154416.3	chr4	-	648	7	NNC	ENSMUSG00000028218.20	novel	1292	8	NA	NA	46	-1812	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	295	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATTCAAAGTCACCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	12171168	12155710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_12155769_12157650_12157765_12164087_12164193_12168228_12168325_12168964_12169034_12169957_12169979_12170983
ENSMUST00000154446.2	chr2	+	567	5	ISM	ENSMUSG00000005089.16	ENST00000644868.1	1864	11	25232	65	25229	-65	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATAAACTCCCCAGCGTA	NA	NA	NA	NA	NA	NA	NA	NA	102591517	102611902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_102591555_102597277_102597413_102607771_102608001_102611061_102611133_102611807
ENSMUST00000154452.2	chr11	+	760	2	FSM	ENSMUSG00000084835.2	ENSMUST00000154452.2	760	2	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCGCCCTCTGCCGTCAGC	NA	NA	NA	NA	NA	NA	NA	NA	98328862	98329872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_98329543_98329792
ENSMUST00000154478.3	chr7	+	395	1	FSM	ENSMUSG00000056836.9	ENSMUST00000154478.3	395	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCACATGAAAGACTAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	39840360	39840755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_39840400_39840800
ENSMUST00000154533.8	chr14	+	474	4	ISM	ENSMUSG00000060126.15	ENSMUST00000110894.9	1169	6	239	1638	-24	-1395	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTAATTTCAATAACTACC	NA	NA	NA	NA	NA	NA	NA	NA	76082771	76084217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133
ENSMUST00000154553.2	chr17	+	1049	8	FSM	ENSMUSG00000073468.13	ENSMUST00000154553.2	1049	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTGGATCAACTGTA	NA	NA	NA	NA	NA	NA	NA	NA	8529933	8546274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
ENSMUST00000154641.8	chr6	-	678	3	NNC	ENSMUSG00000038227.16	novel	851	3	NA	NA	-3719	158	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATATATATTTAAAAAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	52208069	52200942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_52201463_52202507_52202598_52208001
ENSMUST00000154660.2	chr16	+	888	10	ISM	ENSMUSG00000003234.17	ENSMUST00000003319.6	3090	21	2000	2506	2000	-2506	internal_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGGCGTGGATTGGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	20369326	20377623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377355_20377446
ENSMUST00000154689.8	chr4	+	995	7	FSM	ENSMUSG00000028863.14	ENSMUST00000154689.8	4550	7	31	3524	3	-175	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCCATTCTCTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	124978957	125003507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125002115_125002150_125003091
ENSMUST00000154777.2	chr1	+	742	6	ISM	ENSMUSG00000032883.16	ENSMUST00000134566.8	2492	14	32380	9872	32380	-9872	internal_fragment	TRUE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTAAAGCCAGTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	78667979	78674746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606
ENSMUST00000154785.2	chr19	+	604	4	ISM	ENSMUSG00000024829.13	ENSMUST00000025743.7	802	7	3751	6	3751	-6	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGAGCCTGTGACTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	3336810	3341195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_3337039_3337702_3337756_3338983_3339088_3340976
ENSMUST00000154853.8	chr7	-	883	5	FSM	ENSMUSG00000035642.17	ENSMUST00000154853.8	883	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGTTGAGAGCATTAG	NA	NA	NA	NA	NA	NA	NA	NA	97228703	97199546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97224794_97224899_97228572
ENSMUST00000154948.8	chr15	+	951	9	NNC	ENSMUSG00000023051.12	novel	1523	9	NA	NA	98	-203	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAACTGTCCACCCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	102426991	102431654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_102427038_102427556_102427727_102428909_102429013_102429572_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUST00000154972.9	chr11	-	1049	5	FSM	ENSMUSG00000014195.17	ENSMUST00000154972.9	1049	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGCTCCTTTTGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	100510446	100488252	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_100488881_100489440_100489555_100490010_100490136_100492553_100492643_100510353
ENSMUST00000154992.2	chr18	+	717	1	FSM	ENSMUSG00000085939.4	ENSMUST00000154992.2	717	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	257	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGGGGGGCGTTTGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	50267861	50268578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_50267900_50268600
ENSMUST00000155008.2	chr9	+	481	1	FSM	ENSMUSG00000066443.6	ENSMUST00000155008.2	481	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATGTACACAAAGAAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	88272889	88273370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_88272900_88273400
ENSMUST00000155045.2	chr2	-	2108	3	ISM	ENSMUSG00000075040.10	ENSMUST00000111333.2	3740	4	1745	960	1733	-960	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATGTTGGGGATGAGCC	NA	NA	NA	NA	NA	NA	NA	NA	91478391	91474992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_91476819_91477940_91478192_91478360
ENSMUST00000155071.9	chr17	-	712	5	FSM	ENSMUSG00000052146.17	ENSMUST00000155071.9	712	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGACCCGAAACAGAATTG	NA	NA	NA	NA	NA	NA	NA	NA	27854202	27849942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27854177
ENSMUST00000155256.8	chr7	-	864	7	NIC	ENSMUSG00000066568.13	novel	1389	10	NA	NA	-1	-7548	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAATGCTGATGAGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	34088904	34052907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_34052987_34053089_34053273_34056858_34056922_34065039_34065163_34070479_34070610_34074653_34074818_34088782
ENSMUST00000155364.8	chr17	+	958	5	FSM	ENSMUSG00000023861.18	ENSMUST00000155364.8	958	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAGTGTGACTATATAT	NA	NA	NA	NA	NA	NA	NA	NA	8502593	8516493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_8502794_8512246_8512251_8515366_8515464_8515655_8515789_8515969
ENSMUST00000155371.2	chr11	-	703	3	ISM	ENSMUSG00000018446.9	ENSMUST00000078528.7	1175	6	4155	12	4155	-12	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAAGTTGAGGTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	70869697	70868673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_70869071_70869253_70869377_70869514
ENSMUST00000155381.2	chr11	+	677	3	ISM	ENSMUSG00000017639.14	ENST00000394744.6	1899	13	-23	9396	-23	-9396	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTACTCAGATCTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	79551387	79574324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_79551683_79571613_79571838_79574166
ENSMUST00000155381.2-0	chr11	+	603	3	ISM	ENSMUSG00000017639.14	ENST00000394744.6	1899	13	-23	9470	-23	-9470	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGACTATGGCGAGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	79551387	79574250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_79551683_79571613_79571838_79574166
ENSMUST00000155384.2	chr11	+	1208	2	FSM	ENSMUSG00000054418.7	ENSMUST00000155384.2	1784	2	0	576	0	-576	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAGACTAAAGCAAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	117502072	117504107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_117502261_117503087
ENSMUST00000155429.2	chr4	-	491	4	NNC	ENSMUSG00000028454.17	novel	4239	10	NA	NA	5371	-253	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGCTGTGCTCGTTGGCGT	NA	NA	NA	NA	NA	NA	NA	NA	43019706	43017906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_43018039_43018147_43018219_43019211_43019440_43019646
ENSMUST00000155435.8	chr9	-	2532	7	FSM	ENSMUSG00000059820.15	ENSMUST00000171462.8	3339	7	79	728	79	-728	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCCTTGATTATGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	50528685	50517271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_50519237_50520671_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50527957_50527985_50528527
ENSMUST00000155480.9	chr12	-	1970	7	FSM	ENSMUSG00000076432.14	ENSMUST00000155480.9	1970	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTATTATGGCTTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	21467589	21440332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_21441417_21441717_21441801_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
ENSMUST00000155487.8	chr13	-	1357	12	FSM	ENSMUSG00000038212.17	ENSMUST00000155487.8	3832	12	326	2149	325	-151	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTCTTTTTTGGTTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	65260463	65214625	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_65214676_65215676_65215820_65217457_65217556_65219818_65219932_65221369_65221442_65222799_65222914_65223297_65223517_65226167_65226283_65229213_65229342_65234902_65234966_65243432_65243529_65260317
ENSMUST00000155561.2	chr2	-	349	2	ISM	ENSMUSG00000027224.15	ENSMUST00000028653.14	1026	6	1115	1341	1115	-1341	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTATGCCTCTGCCATGCT	NA	NA	NA	NA	NA	NA	NA	NA	122136192	122135566	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_122135758_122136034
ENSMUST00000155575.2	chr13	+	600	5	FSM	ENSMUSG00000019132.12	ENST00000378102.3	754	5	6	148	6	-148	multi-exon	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGTTATGCAGCATCTG	NA	NA	NA	NA	NA	NA	NA	NA	24986002	24996643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_24986144_24988764_24988942_24989844_24989968_24993868_24994004_24996619
ENSMUST00000155575.2-0	chr13	+	748	5	FSM	ENSMUSG00000019132.12	ENST00000378102.3	754	5	6	0	6	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTATTTTCTTTTCTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	24986002	24996791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_24986144_24988764_24988942_24989844_24989968_24993868_24994004_24996619
ENSMUST00000155605.2	chr2	+	926	3	ISM	ENSMUSG00000026728.10	ENSMUST00000193675.2	1777	8	41	4221	41	-4221	intron_retention	FALSE	canonical	NA	NA	NA	NA	3380	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCCAGATTCAGGAACAG	NA	NA	NA	NA	NA	NA	NA	NA	13579132	13583415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_13579806_13580351_13580413_13583223
ENSMUST00000155622.8	chrX	-	773	4	FSM	ENSMUSG00000087365.8	ENSMUST00000155622.8	773	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTGTGTCCATTTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	52146067	52143922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_52144368_52145018_52145042_52145534_52145647_52145874
ENSMUST00000155671.8	chr5	+	2716	4	FSM	ENSMUSG00000029462.19	ENSMUST00000155671.8	2716	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1611	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTATGGGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	122492431	122503047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_122492540_122498075_122498268_122500098_122500335_122500867
ENSMUST00000155672.8	chr7	+	1938	8	FSM	ENSMUSG00000041769.14	ENSMUST00000155672.8	1938	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCCACTGCAGTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	138448323	138484783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
ENSMUST00000155803.2	chr8	-	267	2	ISM	ENSMUSG00000014444.18	ENSMUST00000156333.9	8219	51	68816	471	1163	-248	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGATCTCTCACTCCATCA	NA	NA	NA	NA	NA	NA	NA	NA	123209252	123208907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123208971_123209048
ENSMUST00000155838.2	chr2	-	482	2	ISM	ENSMUSG00000057182.16	ENST00000409101.7	6601	28	69595	35165	69594	-35165	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTATGTGAAAAATAAGATA	NA	NA	NA	NA	NA	NA	NA	NA	65328071	65325616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_65325741_65327713
ENSMUST00000155894.2	chr11	-	985	7	NNC	ENSMUSG00000041346.12	novel	1891	10	NA	NA	15402	1	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTCATTGTGTCTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	69454748	69452583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454145_69454263_69454372_69454464_69454684
ENSMUST00000155902.8	chr5	-	736	6	NNC	ENSMUSG00000029730.17	novel	1351	9	NA	NA	3	-4271	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCGGCTGTACCTACAGAC	NA	NA	NA	NA	NA	NA	NA	NA	138170077	138167140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168685_138169987
ENSMUST00000155954.3	chr11	+	2181	2	FSM	ENSMUSG00000050538.9	ENSMUST00000155954.3	2181	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAAACAAACAAATCT	NA	NA	NA	NA	NA	NA	NA	NA	97732125	97734925	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_97732391_97733009
ENSMUST00000155956.2	chr16	-	203	2	NIC	ENSMUSG00000022890.14	novel	1115	4	NA	NA	498	-3498	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTCGTGGACAAGATAAGA	NA	NA	NA	NA	NA	NA	NA	NA	84631893	84628256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_84628396_84631829
ENSMUST00000155966.8	chr16	-	963	6	FSM	ENSMUSG00000023791.19	ENSMUST00000155966.8	963	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGCTCTTTTCAGAACT	NA	NA	NA	NA	NA	NA	NA	NA	31918546	31903255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918293
ENSMUST00000155969.8	chr14	-	510	2	ISM	ENSMUSG00000002332.17	ENSMUST00000002403.10	1477	9	6030	0	6030	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGAGTTCTCATTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	55977117	55976476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55976878_55977008
ENSMUST00000156180.2	chr5	-	2105	3	FSM	ENSMUSG00000029655.18	ENST00000674327.1	2107	3	2	0	2	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGATCATTTATTTACAT	NA	NA	NA	NA	NA	NA	NA	NA	150585978	150566035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_150566781_150574079_150574205_150584743
ENSMUST00000156250.2	chr3	-	418	3	NNC	ENSMUSG00000028041.18	novel	1686	14	NA	NA	9480	0	at_least_one_novel_splicesite	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGCTCCTGGAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	89247747	89246950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_-_89247261_89247361_89247430_89247707
ENSMUST00000156258.2	chr2	+	793	3	NNC	ENSMUSG00000027582.17	novel	2072	6	NA	NA	13967	-44	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGTCTTGGGGTGTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	181021431	181022531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_+_181021483_181021566_181021973_181022195
ENSMUST00000156308.8	chr2	-	569	3	ISM	ENSMUSG00000089917.8	ENST00000358711.7	1880	13	12091	3	12091	-3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTTAGAAAATGATCGT	NA	NA	NA	NA	NA	NA	NA	NA	181211674	181210957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_181211184_181211260_181211418_181211488
ENSMUST00000156380.4	chr8	+	968	4	FSM	ENSMUSG00000087687.4	ENSMUST00000156380.4	1193	4	4	221	4	-221	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATGTATGCTAATGTAC	NA	NA	NA	NA	NA	NA	NA	NA	3671554	3674014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_3671612_3672341_3672429_3672592_3672626_3673223
ENSMUST00000156392.8	chr1	-	1122	6	FSM	ENSMUSG00000026049.12	ENSMUST00000156392.8	1122	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGTGCCTTTGTTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	44141598	44125775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139082_44141487
ENSMUST00000156404.2	chr4	+	655	2	ISM	ENSMUSG00000073684.14	ENSMUST00000105627.8	710	4	707	-65	693	65	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCAGAGATTACCTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	155335152	155340905	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155335494_155340591
ENSMUST00000156426.8	chr9	-	636	5	NIC	ENSMUSG00000023249.16	novel	2495	11	NA	NA	272	-3433	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGCAATGACCCTCATGAA	NA	NA	NA	NA	NA	NA	NA	NA	106353303	106351620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_106351735_106351878_106352068_106352221_106352348_106352997_106353182_106353280
ENSMUST00000156440.8	chr9	+	1979	14	FSM	ENSMUSG00000032078.18	ENSMUST00000156440.8	2984	14	144	861	144	-861	multi-exon	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGCTGCTGTAGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	46184505	46193080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_46184666_46184775_46184938_46185353_46185445_46185954_46186026_46186661_46186749_46187028_46187152_46187497_46187546_46187709_46187777_46188089_46188161_46188943_46189034_46189601_46189713_46190966_46191054_46191213_46191280_46192335
ENSMUST00000156445.2	chr4	+	369	3	NNC	ENSMUSG00000028936.16	novel	474	4	NA	NA	77	-6	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAACCGGTGGTTTATCC	NA	NA	NA	NA	NA	NA	NA	NA	152412013	152416931	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_+_152412043_152414460_152414586_152416716
ENSMUST00000156473.8	chrX	-	1114	6	FSM	ENSMUSG00000046032.17	ENSMUST00000156473.8	1114	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTCTCAGCTAGTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	100266159	100141391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_100141834_100145973_100146042_100257379_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUST00000156481.8	chr5	+	2382	4	FSM	ENSMUSG00000015804.15	ENSMUST00000156481.8	4560	4	66	2112	0	1527	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTGGGGAGGGGTATGT	NA	NA	NA	NA	NA	NA	NA	NA	45677636	45684506	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_45677827_45679777_45679845_45680763_45680877_45682494
ENSMUST00000156529.8	chr7	+	1080	7	FSM	ENSMUSG00000030990.19	ENSMUST00000156529.8	2034	7	41	913	0	-109	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCCACCACTCATGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	101872275	101886861	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
ENSMUST00000156642.8	chr11	+	914	5	ISM	ENSMUSG00000007850.17	ENST00000510411.5	2062	12	4872	203	4872	-203	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACGTGAGTTTAAAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	50274005	50277148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_50274142_50274506_50274597_50275470_50275564_50275967_50276018_50276603
ENSMUST00000156675.8	chr1	+	531	5	NNC	ENSMUSG00000062590.14	novel	2160	21	NA	NA	42503	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCATTCTCTTTATTGT	NA	NA	NA	NA	NA	NA	NA	NA	86130217	86180211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_+_86130287_86135674_86135766_86140774_86140828_86172287_86172393_86179998
ENSMUST00000156688.2	chr2	-	472	2	ISM	ENSMUSG00000007659.19	ENST00000420488.6	2414	3	18	49068	8	-1395	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGATTCCCATGGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	152673630	152671676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_152672041_152673522
ENSMUST00000156697.8	chrX	+	750	6	FSM	ENSMUSG00000041380.14	ENSMUST00000156697.8	4654	6	509	3395	0	-1832	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTCATCCCGTTGACA	NA	NA	NA	NA	NA	NA	NA	NA	145746018	145976878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_145746071_145764543_145764602_145855380_145855484_145858726_145859044_145952565_145952672_145976764
ENSMUST00000156711.8	chr2	+	2809	5	NNC	ENSMUSG00000026848.15	novel	3039	5	NA	NA	228	-3	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTTTCCTGAGCTTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	30843198	30849024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_+_30843236_30843763_30844021_30845779_30845966_30846459_30846588_30846823
ENSMUST00000156741.8	chrX	-	763	7	NNC	ENSMUSG00000031157.11	novel	1148	7	NA	NA	-21	-83	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCAGCAGCGCCCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	7765239	7761032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765204
ENSMUST00000156771.2	chr4	-	411	2	NNC	ENSMUSG00000028617.11	novel	1755	8	NA	NA	372	-13899	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTGCTGCTGAAGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	107110357	107104609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_107104978_107110314
ENSMUST00000156834.2	chr6	-	974	3	ISM	ENSMUSG00000034312.16	ENST00000646269.1	3436	13	171	29605	171	-28083	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	207	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGCCCTCAAGTCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	90741123	90667513	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_90667809_90671540_90671833_90740736
ENSMUST00000156836.2	chr4	-	914	2	FSM	ENSMUSG00000028629.10	ENSMUST00000177880.2	1969	2	-12	1067	-12	-1067	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCCCCATCGCCACAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	120782214	120779465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_120779873_120781707
ENSMUST00000156844.8	chr2	+	752	4	FSM	ENSMUSG00000078875.11	ENSMUST00000156844.8	752	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAATGGTTTTGTGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	176692769	176702306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806
ENSMUST00000156911.2	chr9	+	773	4	ISM	ENSMUSG00000006932.18	ENST00000441708.2	2475	15	5085	2253	5085	-2141	internal_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTCCACTCCAGGAATGA	NA	NA	NA	NA	NA	NA	NA	NA	120784362	120786705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_120784734_120784879_120785039_120786172_120786293_120786582
ENSMUST00000156974.8	chrX	-	1691	7	FSM	ENSMUSG00000087174.8	ENSMUST00000156974.8	1691	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTTTTGTTTGGCTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	104113652	104082413	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_104083419_104086730_104086911_104087607_104087718_104110364_104110484_104112069_104112235_104113216_104113282_104113605
ENSMUST00000157005.3	chr6	-	1053	2	FSM	ENSMUSG00000001521.13	ENSMUST00000157005.3	1053	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTGTTGTTTAATAAG	NA	NA	NA	NA	NA	NA	NA	NA	128332788	128319203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_128320169_128332700
ENSMUST00000157313.4	chr4	-	108	1	FSM	ENSMUSG00000087938.4	ENSMUST00000157313.4	108	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGTGGATATGATTGG	NA	NA	NA	NA	NA	NA	NA	NA	41312198	41312090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_41312100_41312200
ENSMUST00000159009.2	chr17	-	982	3	NNC	ENSMUSG00000050410.16	novel	1665	4	NA	NA	4	-1917	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCCCTCTCAGCATGGGG	NA	NA	NA	NA	NA	NA	NA	NA	35827717	35825550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_-_35825918_35826774_35827328_35827655
ENSMUST00000159018.8	chr5	+	741	6	FSM	ENSMUSG00000038722.18	ENSMUST00000159018.8	741	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACATTCTTTCTTTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	145077217	145084884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_145077253_145078114_145078171_145079257_145079378_145081708_145081832_145083252_145083420_145084644
ENSMUST00000159096.8	chr5	-	864	9	NNC	ENSMUSG00000025533.16	novel	1388	15	NA	NA	9366	1	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTCTGCCTGTGGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	130043563	130040334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042375_130042803_130042867_130043519
ENSMUST00000159099.8	chr9	-	1201	6	FSM	ENSMUSG00000001366.15	ENSMUST00000159099.8	1201	6	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTTTTCATATTGATTT	NA	NA	NA	NA	NA	NA	NA	NA	78015886	78002794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78015572
ENSMUST00000159103.2	chr17	-	531	1	FSM	ENSMUSG00000090224.2	ENSMUST00000159103.2	531	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATGGACCATTTTTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	68678805	68678274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_68678300_68678800
ENSMUST00000159209.8	chr15	+	944	10	FSM	ENSMUSG00000023010.16	ENSMUST00000159209.8	944	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCACCCCCCCACCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	99291099	99306416	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_99291265_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ENSMUST00000159216.10	chr15	+	1560	5	FSM	ENSMUSG00000064373.14	ENSMUST00000159216.10	2085	5	0	525	0	-153	multi-exon	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGTTACATTAATGAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	3300402	3309464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_3300535_3304142_3304359_3305048_3305262_3306638_3306757_3308583
ENSMUST00000159266.2	chr1	-	336	1	FSM	ENSMUSG00000089838.2	ENSMUST00000159266.2	336	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTAGTTAAGATCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	170753213	170752877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_170752900_170753200
ENSMUST00000159311.8	chr1	+	1816	7	FSM	ENSMUSG00000025979.14	ENSMUST00000159311.8	1816	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCAGCCGGGCGGTGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	55170389	55193097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_55170519_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
ENSMUST00000159327.2	chr15	+	2186	3	FSM	ENSMUSG00000022346.18	ENSMUST00000159327.2	2186	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTTCTTTTTCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	61857412	61862223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_61857801_61859358_61860128_61861194
ENSMUST00000159330.8	chr8	-	713	6	ISM	ENSMUSG00000031878.19	ENSMUST00000162466.8	1735	19	16593	9	16593	-9	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTAATATAGTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	105244675	105237668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538
ENSMUST00000159335.8	chr6	+	1998	5	FSM	ENSMUSG00000089862.9	ENSMUST00000159335.8	2615	5	0	617	0	-617	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	8259287	8458853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_8259494_8270472_8270582_8373905_8373968_8426970_8427186_8457447
ENSMUST00000159343.3	chr3	-	586	1	FSM	ENSMUSG00000089988.3	ENSMUST00000159343.3	586	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCCCTCATGTCTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	127486169	127485583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_127485600_127486200
ENSMUST00000159371.2	chr1	+	451	3	ISM	ENSMUSG00000026641.14	ENST00000368019.5	997	9	3022	-1	3022	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	341	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCCTCTCCTTCACTGCC	NA	NA	NA	NA	NA	NA	NA	NA	171245027	171245754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_171245100_171245208_171245433_171245599
ENSMUST00000159386.8	chr9	+	4527	20	FSM	ENSMUSG00000032280.17	ENSMUST00000159386.8	4527	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGACCCCCCCCCCCACC	NA	NA	NA	NA	NA	NA	NA	NA	61279664	61325187	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301965_61309134_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316663_61317217_61317418_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
ENSMUST00000159407.3	chr1	+	388	2	FSM	ENSMUSG00000089812.3	ENSMUST00000159407.3	388	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTCAAGTCATTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	192537230	192538554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_192537387_192538322
ENSMUST00000159420.2	chr17	+	350	4	ISM	ENSMUSG00000003199.17	ENSMUST00000159996.8	1444	12	2712	1533	2712	-1526	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCCCCCCCCCCAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	56318942	56322120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_56318963_56319270_56319344_56319415_56319493_56321940
ENSMUST00000159551.8	chr17	-	2060	8	FSM	ENSMUSG00000060475.14	ENSMUST00000159551.8	2060	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTGTTTTTTCCTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	13211384	13185682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_13186939_13188291_13188447_13194182_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13211195
ENSMUST00000159554.7	chr3	+	486	4	FSM	ENSMUSG00000074604.10	ENSMUST00000159554.7	486	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGCTGTGGCTTTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	51568634	51590096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_51568728_51571931_51572032_51584985_51585057_51589874
ENSMUST00000159619.8	chr5	-	2088	18	FSM	ENSMUSG00000025533.16	ENSMUST00000159619.8	2088	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTTCTGCCTGTGGTCC	NA	NA	NA	NA	NA	NA	NA	NA	130058088	130040335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882_130053203_130053917_130053975_130057821
ENSMUST00000159641.8	chr17	+	538	3	ISM	ENSMUSG00000023990.19	ENST00000419574.6	2329	9	-5	6115	-5	-2769	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCCTACCACCTGCAACA	NA	NA	NA	NA	NA	NA	NA	NA	48080162	48097226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_48080445_48096889_48097122_48097202
ENSMUST00000159663.8	chr1	+	346	8	FSM	ENSMUSG00000053332.14	ENSMUST00000159663.8	346	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	160862735	160866109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865794_160865843_160866026
ENSMUST00000159706.8	chr1	+	557	11	FSM	ENSMUSG00000053332.14	ENSMUST00000159706.8	557	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	NA	NA	NA	NA	NA	NA	NA	160862636	160866107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUST00000159759.3	chr19	+	1528	2	FSM	ENSMUSG00000047423.11	ENSMUST00000159759.3	1528	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACACTGTCCTGATGGTT	NA	NA	NA	NA	NA	NA	NA	NA	5475171	5477341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5475337_5475978
ENSMUST00000159814.2	chr1	-	3997	1	FSM	ENSMUSG00000049866.13	ENSMUST00000159814.2	3997	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGGAGGCGTTTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	88629943	88625946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_88625900_88629900
ENSMUST00000159899.8	chr3	+	1770	11	FSM	ENSMUSG00000039047.18	ENSMUST00000159899.8	4737	11	23	2944	10	160	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAACAAACAACAACCAACAG	NA	NA	NA	NA	NA	NA	NA	NA	152419759	152491719	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_152419865_152422698_152422753_152428121_152428214_152443822_152443959_152445765_152445878_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152472075_152472161_152491032
ENSMUST00000159903.2	chr6	-	1563	2	ISM	ENSMUSG00000045962.17	ENSMUST00000088646.12	8364	26	110398	719	36472	-719	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTGTTTTGTTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	119904222	119902300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_119903649_119904007
ENSMUST00000159918.2	chr1	-	1404	3	ISM	ENSMUSG00000041889.8	ENSMUST00000041240.4	1763	5	1787	3	1787	-3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTATGAGTCCGTCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	135301188	135298797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_135299735_135299934_135300103_135300889
ENSMUST00000159924.8	chr7	-	805	9	FSM	ENSMUSG00000009687.15	ENSMUST00000159924.8	805	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCATGGCCTCTGTCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	30741503	30732157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30737245_30737354_30738462_30738520_30739607_30739683_30740821_30740883_30741471
ENSMUST00000160009.2	chr15	+	1765	2	FSM	ENSMUSG00000022346.18	ENSMUST00000160009.2	1765	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTTAAGACATGTACCAT	NA	NA	NA	NA	NA	NA	NA	NA	61859270	61862102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_61860128_61861194
ENSMUST00000160012.2	chr6	+	480	1	FSM	ENSMUSG00000040078.10	ENSMUST00000160012.2	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGGCTGTTGTCATCGCC	NA	NA	NA	NA	NA	NA	NA	NA	85820961	85821441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_85821000_85821400
ENSMUST00000160027.8-1	chr12	+	1914	11	FSM	ENSMUSG00000060073.10	ENSMUST00000160027.8	2846	11	50	882	-12	-882	multi-exon	FALSE	canonical	NA	NA	NA	NA	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATTCAGCTTACACTTT	NA	NA	NA	NA	NA	NA	NA	NA	71021444	71042239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUST00000160052.2	chr9	+	444	1	FSM	ENSMUSG00000090136.5	ENSMUST00000160052.2	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	760	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAATGGGGCAAGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	37164217	37164661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_37164200_37164700
ENSMUST00000160085.2	chr12	-	676	4	FSM	ENSMUSG00000054302.16	ENSMUST00000160085.2	676	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGCAATAACCTTATCTAAT	NA	NA	NA	NA	NA	NA	NA	NA	54742647	54736895	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_54737142_54738784_54738881_54739559_54739742_54742495
ENSMUST00000160124.2	chr9	+	326	4	FSM	ENSMUSG00000084786.10	ENSMUST00000160124.2	501	4	177	-2	177	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGCTGTCATACTTGT	NA	NA	NA	NA	NA	NA	NA	NA	20556513	20558073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_20556556_20556701_20556786_20556917_20556956_20557911
ENSMUST00000160144.9	chr10	-	554	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160144.9	4323	3	266	3503	-129	-1021	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATGTGCTCTTTGTCGACA	NA	NA	NA	NA	NA	NA	NA	NA	29238172	29223674	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_29223880_29230287_29230444_29237979
ENSMUST00000160180.9	chr18	+	833	5	FSM	ENSMUSG00000024646.15	ENSMUST00000160180.9	833	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTGTCTGTTTGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	84869462	84897996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_84869733_84889629_84889759_84891264_84891295_84895951_84895987_84897627
ENSMUST00000160180.9-1	chr18	+	747	5	FSM	ENSMUSG00000024646.15	ENSMUST00000160180.9	833	5	76	10	-60	-1	multi-exon	FALSE	canonical	NA	NA	NA	NA	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATACCATATGTGTCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	84869538	84897986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_84869733_84889629_84889759_84891264_84891295_84895951_84895987_84897627
ENSMUST00000160180.9-2	chr18	+	682	5	FSM	ENSMUSG00000024646.15	ENSMUST00000160180.9	833	5	39	112	39	-103	multi-exon	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAAATGTGCCTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	84869501	84897884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_84869733_84889629_84889759_84891264_84891295_84895951_84895987_84897627
ENSMUST00000160186.2	chr12	-	439	4	NIC	ENSMUSG00000021189.12	novel	5363	11	NA	NA	14084	30	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTTGTAACATTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	101900614	101889339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_101889464_101892742_101892841_101899214_101899324_101900506
ENSMUST00000160213.2	chr2	-	681	6	ISM	ENSMUSG00000027639.17	ENST00000646066.1	1024	9	11333	-26	11333	26	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAGAAAAAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	156952532	156943613	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467
ENSMUST00000160251.8	chr12	-	998	9	FSM	ENSMUSG00000021189.12	ENSMUST00000160251.8	998	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTGTCTGTTTATAAA	NA	NA	NA	NA	NA	NA	NA	NA	101924502	101899182	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_101899320_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
ENSMUST00000160269.2	chr17	+	763	5	NNC	ENSMUSG00000024146.10	novel	1184	5	NA	NA	61	-338	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAATGAGCAGCACCTTA	NA	NA	NA	NA	NA	NA	NA	NA	87333038	87342900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_+_87333082_87335126_87335193_87338435_87338491_87341683_87341788_87342405
ENSMUST00000160271.8	chr4	-	2604	20	FSM	ENSMUSG00000028559.18	ENSMUST00000160271.8	2604	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTTTCATTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	108975233	108918846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
ENSMUST00000160337.2	chr10	+	866	8	FSM	ENSMUSG00000019923.15	ENSMUST00000160337.2	1138	8	0	272	0	-272	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAGATGGTTTGATGATG	NA	NA	NA	NA	NA	NA	NA	NA	72490727	72504725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72504643
ENSMUST00000160372.9	chr10	-	1948	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160372.9	1948	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAATTTGTTTGAGTC	NA	NA	NA	NA	NA	NA	NA	NA	29238043	29222171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_29223880_29230287_29230444_29237959
ENSMUST00000160407.8	chr15	-	496	4	ISM	ENSMUSG00000022635.10	ENSMUST00000162160.8	850	8	7118	13	7118	-4	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTGTGGAATAGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	93289064	93283990	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_93284165_93285457_93285534_93285627_93285741_93288931
ENSMUST00000160417.8	chr19	-	620	4	FSM	ENSMUSG00000024799.17	ENSMUST00000160417.8	718	4	42	56	-5	2	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATGGTTTTGCTTTAATA	NA	NA	NA	NA	NA	NA	NA	NA	6117838	6116214	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6116445_6116528_6116724_6116997_6117053_6117698
ENSMUST00000160439.8	chr1	+	1206	10	FSM	ENSMUSG00000026197.13	ENSMUST00000160439.8	1206	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTGCTGTTTCTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	75145289	75148273	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
ENSMUST00000160488.8	chr12	+	802	3	FSM	ENSMUSG00000021040.16	ENSMUST00000160488.8	802	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACGTTTTTATTTGAAAT	NA	NA	NA	NA	NA	NA	NA	NA	87490681	87496690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_87490797_87494333_87494393_87496062
ENSMUST00000160535.8	chr17	-	731	5	ISM	ENSMUSG00000001524.15	ENSMUST00000160734.8	1569	14	3781	-2	3781	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATCTACGCGGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	35980729	35978630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520
ENSMUST00000160629.8	chr5	+	1713	8	FSM	ENSMUSG00000029625.17	ENSMUST00000160629.8	1713	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTTTCATTACTTAA	NA	NA	NA	NA	NA	NA	NA	NA	145104022	145118851	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115645_145115739_145117945
ENSMUST00000160653.2	chr13	-	2586	10	FSM	ENSMUSG00000038991.18	ENSMUST00000160653.2	2586	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAAGTCTGGTCTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	38711890	38684248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_38685685_38687406_38687537_38688699_38688783_38690924_38691066_38691869_38691957_38694102_38694219_38697043_38697141_38702958_38703065_38707304_38707455_38711650
ENSMUST00000160681.2	chr10	+	714	5	ISM	ENSMUSG00000020246.14	ENSMUST00000020478.14	3422	15	29342	3206	29342	-3206	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGGGCTATGGACCAGC	NA	NA	NA	NA	NA	NA	NA	NA	82564182	82575056	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813
ENSMUST00000160682.8	chr9	+	369	6	FSM	ENSMUSG00000084786.10	ENSMUST00000160682.8	489	6	0	120	0	-112	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGGGGATTCCTTCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	20555366	20557953	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_20555435_20556119_20556190_20556488_20556556_20556701_20556786_20556917_20556956_20557911
ENSMUST00000160705.8	chr6	+	624	5	FSM	ENSMUSG00000089862.9	ENSMUST00000160705.8	624	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTGAACCTGTGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	8259427	8427279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_8259494_8270472_8270582_8373905_8373968_8401076_8401155_8426970
ENSMUST00000160708.8	chr8	+	1850	19	FSM	ENSMUSG00000004626.15	ENSMUST00000160708.8	2908	19	202	856	1	6	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCACCAGGGCTCACCT	NA	NA	NA	NA	NA	NA	NA	NA	3681156	3692788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897_3692056_3692645
ENSMUST00000160718.9	chr19	-	1295	5	FSM	ENSMUSG00000040913.12	ENSMUST00000160718.9	1295	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTTTGGTGGTTAG	NA	NA	NA	NA	NA	NA	NA	NA	45619577	45566692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_45567365_45567559_45567702_45568091_45568233_45580167_45580234_45619303
ENSMUST00000160722.8	chr2	-	931	7	FSM	ENSMUSG00000027165.17	ENSMUST00000160722.8	931	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCCTCTGTGGAAATGTA	NA	NA	NA	NA	NA	NA	NA	NA	101479877	101392468	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_101392700_101406356_101406497_101413865_101413933_101415588_101415661_101416656_101416815_101440868_101441021_101479766
ENSMUST00000160786.8	chr1	+	1073	8	FSM	ENSMUSG00000026150.15	ENSMUST00000160786.8	1645	8	8	564	0	36	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTTTGCATCATCGTA	NA	NA	NA	NA	NA	NA	NA	NA	82702668	82729507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82724803_82724864_82728240_82728326_82729305
ENSMUST00000160801.8	chr13	+	3062	14	FSM	ENSMUSG00000042015.18	ENSMUST00000160801.8	3062	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTGGGTTTGTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	95112855	95159821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_95113098_95114977_95115094_95131757_95131807_95133563_95133694_95136019_95136023_95136374_95136437_95142238_95142351_95145315_95145379_95146792_95146904_95151538_95151724_95153834_95153957_95154624_95154714_95155339_95155474_95158177
ENSMUST00000160852.8	chr19	-	2532	5	FSM	ENSMUSG00000118125.2	ENSMUST00000160852.8	2532	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGATTGCCTGGTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	5781741	5778115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5778897_5779264_5780741_5781268_5781354_5781471_5781624_5781703
ENSMUST00000160857.8	chr15	+	357	2	ISM	ENSMUSG00000022553.17	ENST00000534585.5	1724	7	-18	1926	0	-1925	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATCTCCCTTCCCAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	76235526	76236647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76235860_76236623
ENSMUST00000160972.8	chr1	+	1358	5	FSM	ENSMUSG00000026150.15	ENSMUST00000160972.8	1358	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	NA	NA	NA	NA	NA	NA	NA	82706949	82730111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305
ENSMUST00000160977.8	chr19	-	922	8	NIC	ENSMUSG00000024792.10	novel	1357	8	NA	NA	28	-406	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGGCTGCTGCTCCTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	6134945	6131197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134824
ENSMUST00000160980.3	chr1	+	1130	6	ISM	ENSMUSG00000073664.12	ENST00000683969.1	8481	56	41612	95435	41603	-95435	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATGGTATAAGTTGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	60261360	60274720	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_60261533_60263783_60263891_60267780_60267868_60269760_60269845_60273955_60274055_60274139
ENSMUST00000161011.8	chr12	-	1000	9	FSM	ENSMUSG00000021189.12	ENSMUST00000161011.8	1000	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGATTTTGTCTGTTTATA	NA	NA	NA	NA	NA	NA	NA	NA	101924502	101899184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
ENSMUST00000161023.8	chr12	+	693	4	FSM	ENSMUSG00000021040.16	ENSMUST00000161023.8	2701	4	50	1958	34	328	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTGCTGGGATCTATCAT	NA	NA	NA	NA	NA	NA	NA	NA	87490715	87497018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_87490797_87494333_87494393_87496062_87496171_87496573
ENSMUST00000161066.8	chr1	+	341	4	NNC	ENSMUSG00000056870.10	novel	2798	12	NA	NA	29	-57855	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGCCTGAAGCTTTATCAA	NA	NA	NA	NA	NA	NA	NA	NA	44591756	44747792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_+_44591864_44592321_44592468_44728303_44728376_44747776
ENSMUST00000161072.2	chr15	+	455	3	NNC	ENSMUSG00000022553.17	novel	1724	7	NA	NA	2070	-257	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCACCAACAGCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	76237614	76238315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_76237661_76237785_76237926_76238046
ENSMUST00000161074.8	chr10	-	875	5	FSM	ENSMUSG00000019791.13	ENSMUST00000161074.8	875	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTTGTCTTCAGACACAC	NA	NA	NA	NA	NA	NA	NA	NA	30494475	30484136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_30484420_30486312_30486440_30487643_30487714_30490708_30490827_30494198
ENSMUST00000161137.8	chr3	-	1927	8	FSM	ENSMUSG00000027835.12	ENSMUST00000161137.8	1927	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTGCTATAAGACAATT	NA	NA	NA	NA	NA	NA	NA	NA	75464163	75423796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_75424909_75428008_75428092_75428337_75428417_75434894_75435022_75436116_75436235_75440847_75440902_75448466_75448686_75464028
ENSMUST00000161166.8	chr14	-	1445	6	FSM	ENSMUSG00000035953.15	ENSMUST00000161166.8	1445	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	NA	NA	NA	NA	NA	NA	NA	51168270	51164671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51167040_51167148_51167590_51167782_51168090
ENSMUST00000161187.8	chr9	-	2847	14	FSM	ENSMUSG00000042790.17	ENSMUST00000161187.8	2847	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAATGCATCTGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	45817705	45774988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811508_45811555_45816103_45816218_45817649
ENSMUST00000161209.2	chr16	-	711	1	FSM	ENSMUSG00000089698.2	ENSMUST00000161209.2	711	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGACTTGGCGGCAGCCG	NA	NA	NA	NA	NA	NA	NA	NA	85350831	85350120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_85350100_85350800
ENSMUST00000161250.8	chr15	+	1148	11	FSM	ENSMUSG00000023010.16	ENSMUST00000161250.8	1148	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGAAATTTTTTGATC	NA	NA	NA	NA	NA	NA	NA	NA	99290866	99306515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_99290922_99297537_99297753_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ENSMUST00000161271.2	chr11	+	516	4	ISM	ENSMUSG00000020898.19	ENSMUST00000116359.3	3978	23	18782	290	18782	-290	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGCCCCAGAGTTTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	68925704	68927006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_68925775_68926330_68926497_68926592_68926720_68926853
ENSMUST00000161304.2	chr14	-	1527	8	ISM	ENSMUSG00000033083.17	ENST00000648194.1	3976	18	44623	715	44623	-715	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTTCCTTTAAAATATCT	NA	NA	NA	NA	NA	NA	NA	NA	101700511	101681951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_101682208_101684962_101685140_101686637_101686808_101689853_101690014_101692282_101692528_101695501_101695661_101696170_101696330_101700310
ENSMUST00000161326.8	chr16	+	1688	5	FSM	ENSMUSG00000022698.18	ENSMUST00000161326.8	4487	5	39	2760	0	-568	multi-exon	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTGCATTACGTAAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	43960254	43980969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_43960475_43976772_43976910_43977436_43977557_43978242_43978310_43979825
ENSMUST00000161366.2	chr6	-	626	2	FSM	ENSMUSG00000089890.2	ENSMUST00000161366.2	626	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTCTTCCTTTACTACC	NA	NA	NA	NA	NA	NA	NA	NA	8364136	8354055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_8354405_8363859
ENSMUST00000161368.2	chr19	-	1160	2	FSM	ENSMUSG00000024939.7	ENSMUST00000161368.2	1160	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGATTGCCTGGTTAATT	NA	NA	NA	NA	NA	NA	NA	NA	5779681	5778114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5778858_5779264
ENSMUST00000161391.2	chr15	+	757	4	ISM	ENSMUSG00000022553.17	ENST00000534585.5	1724	7	1549	347	1549	-346	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTGGATGTCCACTCAT	NA	NA	NA	NA	NA	NA	NA	NA	76237093	76238226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76237213_76237337_76237661_76237785_76237921_76238046
ENSMUST00000161432.2	chr11	-	800	3	ISM	ENSMUSG00000018501.18	ENSMUST00000037575.15	4246	24	14890	22658	14890	-22658	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGCACTTGGATCCAGCTA	NA	NA	NA	NA	NA	NA	NA	NA	62235727	62231280	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_62231456_62233822_62234178_62235457
ENSMUST00000161436.2	chr16	-	739	5	FSM	ENSMUSG00000022668.11	ENST00000383677.7	773	5	-27	61	-27	-61	multi-exon	FALSE	canonical	NA	NA	NA	NA	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGACAACTGGAGTTAAAC	NA	NA	NA	NA	NA	NA	NA	NA	44566646	44559627	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44566361
ENSMUST00000161469.2	chr9	-	348	1	FSM	ENSMUSG00000059658.6	ENSMUST00000161469.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCCCCACTTACCTG	NA	NA	NA	NA	NA	NA	NA	NA	14757008	14756660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_14756700_14757000
ENSMUST00000161512.3	chr6	-	1426	1	FSM	ENSMUSG00000045962.17	ENSMUST00000161512.3	1426	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAAGGAATGTTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	119940694	119939268	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_119939300_119940700
ENSMUST00000161527.8	chr15	+	1743	9	FSM	ENSMUSG00000022553.17	ENSMUST00000161527.8	1743	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGAACCTGGGAGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	76235493	76238572	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76235860_76236195_76236242_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
ENSMUST00000161528.2	chr19	-	732	5	FSM	ENSMUSG00000024799.17	ENSMUST00000161528.2	732	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTATGGTTTTGCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	6117885	6116216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6116445_6116528_6116594_6116997_6117053_6117152_6117350_6117698
ENSMUST00000161542.8	chr18	-	2736	10	FSM	ENSMUSG00000038425.19	ENSMUST00000161542.8	2736	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCTCACTGTAAGTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	70663209	70641750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70662821
ENSMUST00000161564.2	chr15	+	445	3	FSM	ENSMUSG00000023032.13	ENSMUST00000161564.2	445	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCAGTTTGGCTGTGATTT	NA	NA	NA	NA	NA	NA	NA	NA	100659749	100672965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_100659856_100672510_100672593_100672708
ENSMUST00000161568.8	chr13	+	482	4	FSM	ENSMUSG00000012422.15	ENSMUST00000161568.8	8689	4	611	7596	-28	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGTTCTCTCACTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	90237852	90252780	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_90237903_90246480_90246591_90249026_90249062_90252493
ENSMUST00000161669.2	chr14	-	356	4	NNC	ENSMUSG00000035953.15	novel	1594	7	NA	NA	1603	-651	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCTGGTACCAACAGTAA	NA	NA	NA	NA	NA	NA	NA	NA	51166666	51165322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr14_-_51165495_51166277_51166369_51166462_51166516_51166626
ENSMUST00000161698.2	chr9	+	207	1	FSM	ENSMUSG00000090136.5	ENSMUST00000161698.2	207	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTCTCATCATGGGACG	NA	NA	NA	NA	NA	NA	NA	NA	37164270	37164477	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_37164300_37164500
ENSMUST00000161735.8	chr15	-	494	4	NNC	ENSMUSG00000087331.9	novel	652	4	NA	NA	703	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGTCATGGTGTCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	88959352	88955400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_-_88955540_88955773_88955952_88958275_88958402_88959301
ENSMUST00000161741.8	chr5	-	421	4	FSM	ENSMUSG00000038690.16	ENSMUST00000161741.8	955	4	534	0	64	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	337	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGTGTAGTCATTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	145128338	145120507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145128312
ENSMUST00000161758.3	chr9	+	5539	23	FSM	ENSMUSG00000040325.17	ENSMUST00000161758.3	5539	23	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTTTTCTTTTACC	NA	NA	NA	NA	NA	NA	NA	NA	106706267	106758191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_106706378_106708056_106708134_106711347_106711422_106712714_106712829_106713759_106713898_106715397_106715908_106716230_106716333_106721334_106721494_106723857_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742211_106742304_106742796_106742899_106751254_106751508_106757132
ENSMUST00000161762.4	chr8	-	775	7	NNC	ENSMUSG00000031781.15	novel	4359	9	NA	NA	52	-467	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCACGGCCTCCTCCCACC	NA	NA	NA	NA	NA	NA	NA	NA	95558490	95549670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553332_95554888_95555068_95555781_95555859_95558400
ENSMUST00000161805.8	chr7	-	743	8	FSM	ENSMUSG00000009687.15	ENSMUST00000161805.8	1166	8	382	41	382	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTGTTCAGATAAATCCAC	NA	NA	NA	NA	NA	NA	NA	NA	30740882	30732187	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30737245_30737354_30738462_30738520_30739607_30739683_30740821
ENSMUST00000161807.8	chr14	-	962	11	FSM	ENSMUSG00000079197.11	ENSMUST00000161807.8	962	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTGTGTTGTTCATTGA	NA	NA	NA	NA	NA	NA	NA	NA	55828544	55824897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828298
ENSMUST00000161915.8	chr5	-	903	6	FSM	ENSMUSG00000001844.11	ENSMUST00000161915.8	1216	6	131	182	131	-182	multi-exon	FALSE	canonical	NA	NA	NA	NA	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGCTGGCCTCTGGTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	143311978	143302433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853
ENSMUST00000161931.2	chr7	-	816	4	NNC	ENSMUSG00000045114.11	novel	2501	4	NA	NA	762	-67	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	185	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGATGGTGTGGGGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	126618767	126617329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_126617903_126618055_126618189_126618566_126618665_126618755
ENSMUST00000161986.2	chr8	+	1922	13	NNC	ENSMUSG00000031985.10	novel	2984	16	NA	NA	39	-3329	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATACTTGGTTGCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	125589810	125613467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_+_125590052_125597514_125597698_125600071_125600219_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421
ENSMUST00000162030.2	chr1	-	545	1	FSM	ENSMUSG00000100720.2	ENSMUST00000162030.2	545	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAGCAAGAAAAAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	19224190	19223645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_19223600_19224200
ENSMUST00000162057.8	chr16	+	1540	6	FSM	ENSMUSG00000022744.13	ENSMUST00000162057.8	1540	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAAAAAAGTGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	58548287	58553971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_58548448_58549535_58549587_58549800_58550111_58551664_58551776_58552943_58553082_58553201
ENSMUST00000162060.9	chr3	-	1537	4	FSM	ENSMUSG00000027833.17	ENSMUST00000162060.9	1537	4	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAAAGCGATACCACA	NA	NA	NA	NA	NA	NA	NA	NA	66885780	66880112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_66881241_66882776_66882866_66883185_66883244_66885518
ENSMUST00000162075.8	chr13	-	2619	10	FSM	ENSMUSG00000038991.18	ENSMUST00000162075.8	2619	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAAGTCTGGTCTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	38712800	38684248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_38685685_38687406_38687537_38688699_38688783_38690924_38691066_38691869_38691957_38694102_38694219_38697043_38697141_38702958_38703065_38707304_38707455_38712527
ENSMUST00000162082.8	chr9	-	1607	5	FSM	ENSMUSG00000032503.19	ENSMUST00000178410.2	3419	5	160	1652	0	-701	multi-exon	FALSE	canonical	NA	NA	NA	NA	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCCTCTGTAGATTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	112016834	112010751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_112011889_112012562_112012653_112013336_112013379_112014676_112014838_112016657
ENSMUST00000162087.8	chr7	-	762	9	FSM	ENSMUSG00000009687.15	ENSMUST00000162087.8	762	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCCCACCCTGGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	30741565	30732231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30737245_30737354_30738462_30738520_30739607_30739683_30740821_30740895_30741514
ENSMUST00000162098.9	chr3	-	1464	5	FSM	ENSMUSG00000027833.17	ENST00000483851.7	3283	5	543	1276	-260	-211	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCAGCTGGGAAGTTCACAG	NA	NA	NA	NA	NA	NA	NA	NA	66888734	66880323	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_66881241_66882776_66882866_66883185_66883244_66885518_66885728_66888543
ENSMUST00000162114.8	chr3	+	1411	7	FSM	ENSMUSG00000027942.18	ENSMUST00000162114.8	1411	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTTGTTTGGGCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	89960148	89968301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89967668
ENSMUST00000162114.8-0	chr3	+	1173	7	FSM	ENSMUSG00000027942.18	ENSMUST00000162114.8	1411	7	62	176	33	-176	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCCCCTCCCCAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	89960210	89968125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89967668
ENSMUST00000162116.8	chr7	-	817	9	FSM	ENSMUSG00000009687.15	ENSMUST00000162116.8	817	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCATGGCCTCTGTCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	30741503	30732157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30737245_30737354_30738462_30738520_30739607_30739683_30740821_30740895_30741471
ENSMUST00000162183.8	chr15	-	2130	10	FSM	ENSMUSG00000035845.18	ENSMUST00000162183.8	2130	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGTGTCTTGTTGTTGGTC	NA	NA	NA	NA	NA	NA	NA	NA	88703521	88689446	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_88690258_88690601_88690678_88690760_88690925_88695499_88695724_88696258_88696363_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
ENSMUST00000162219.2	chr5	-	812	3	NNC	ENSMUSG00000029634.16	novel	3452	5	NA	NA	2912	-1346	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATTCAGAGACAGAATGGT	NA	NA	NA	NA	NA	NA	NA	NA	146154799	146148112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_146148743_146152906_146153000_146154710
ENSMUST00000162236.8	chr11	-	781	5	NIC	ENSMUSG00000018501.18	novel	2811	19	NA	NA	-23563	-6441	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGCAGAGCCGATGGACGT	NA	NA	NA	NA	NA	NA	NA	NA	62274180	62264209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_62264449_62267460_62267588_62269322_62269481_62272233_62272297_62273986
ENSMUST00000162240.2	chr16	+	888	11	ISM	ENSMUSG00000038084.17	ENST00000361510.8	4310	31	7643	41937	997	-40970	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTGTACTGTTAGCCCCG	NA	NA	NA	NA	NA	NA	NA	NA	29405831	29429724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671
ENSMUST00000162244.8	chr5	+	1387	8	FSM	ENSMUSG00000029625.17	ENSMUST00000162244.8	1387	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGGGCGCCAGGCTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	145104063	145118563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115642_145115739_145117945
ENSMUST00000162301.8	chr18	+	3828	21	FSM	ENSMUSG00000024231.16	ENSMUST00000162301.8	3828	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCAATTGTCAAGAAATGT	NA	NA	NA	NA	NA	NA	NA	NA	3383231	3436377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
ENSMUST00000162321.8	chr15	+	855	7	NNC	ENSMUSG00000033287.17	novel	1180	7	NA	NA	134	58	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACTCACTCCTGCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	78312995	78322847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321100_78321300_78322686
ENSMUST00000162326.2	chr13	-	1853	17	NNC	ENSMUSG00000039233.13	novel	1844	17	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGATTTCTCTGCCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	14214223	14172537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178117_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
ENSMUST00000162327.8	chr5	+	2343	14	ISM	ENSMUSG00000042605.17	ENST00000673283.1	3462	23	71866	-78	71866	31	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAATCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	121921969	121952783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935849_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121951447_121951617_121952400
ENSMUST00000162335.8	chr10	-	1434	3	FSM	ENSMUSG00000038876.13	ENSMUST00000162335.8	1434	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTGCTGAAATTTATTTA	NA	NA	NA	NA	NA	NA	NA	NA	29233709	29222653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_29223880_29230287_29230444_29233657
ENSMUST00000162357.2	chr8	-	346	3	ISM	ENSMUSG00000031781.15	ENST00000569370.5	1167	6	5200	445	5200	-445	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATTCAGGCGCTCTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	95553342	95549648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_95549836_95550280_95550360_95553262
ENSMUST00000162364.8	chr1	+	635	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	89	2116	89	-1155	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGGGGAAAGTGAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	55170478	55191942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
ENSMUST00000162405.8	chr10	-	1135	3	FSM	ENSMUSG00000071324.12	ENSMUST00000162405.8	1135	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAATCCTGAGTCTCATC	NA	NA	NA	NA	NA	NA	NA	NA	41894376	41875803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_41876495_41887763_41888020_41894188
ENSMUST00000162439.8	chr3	-	1081	5	FSM	ENSMUSG00000027833.17	ENSMUST00000162439.8	1081	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATAGAGAACAAACTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	66888474	66880591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_66881241_66882776_66882866_66883185_66883244_66885518_66885728_66888398
ENSMUST00000162471.2	chr3	+	1196	6	ISM	ENSMUSG00000034098.15	ENST00000427802.2	2938	15	518983	37	517967	-37	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGGAAATACAGTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	76500856	76615447	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_76500885_76536219_76536339_76555582_76555733_76566965_76567074_76569064_76569190_76614781
ENSMUST00000162538.9	chr8	-	1414	9	FSM	ENSMUSG00000031781.15	ENSMUST00000162538.9	4359	9	0	2945	0	-173	multi-exon	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTAGTTCTTGGAGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	95564986	95549376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564879
ENSMUST00000162550.2	chr1	-	126	1	FSM	ENSMUSG00000089967.2	ENSMUST00000162550.2	126	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGAATTTTTCTCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	164976518	164976392	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_164976400_164976500
ENSMUST00000162579.8	chr15	-	544	3	FSM	ENSMUSG00000087331.9	ENSMUST00000162579.8	544	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCATGGTGTCTCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	88958500	88955398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_88955540_88955773_88955952_88958275
ENSMUST00000162587.2	chr9	+	1148	7	ISM	ENSMUSG00000032086.13	ENST00000513780.5	1457	9	15599	-41	1	41	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGGAGCTATGGATGGTA	NA	NA	NA	NA	NA	NA	NA	NA	45765924	45771660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_45766142_45767460_45767524_45768411_45768547_45769697_45769800_45770207_45770358_45770576_45770749_45771351
ENSMUST00000162648.3	chr10	-	1699	3	NNC	ENSMUSG00000036955.17	novel	2257	6	NA	NA	12264	-29	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGTTGTAAAATGGCTTA	NA	NA	NA	NA	NA	NA	NA	NA	62401900	62394321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_62395663_62399014_62399288_62401815
ENSMUST00000162655.9	chr9	-	2445	13	FSM	ENSMUSG00000032534.19	ENSMUST00000162655.9	4180	13	186	1549	186	441	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCTGCTAGAGGGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	102503547	102463335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_102464212_102471706_102471794_102473320_102473519_102475367_102475483_102478515_102478654_102479616_102479748_102480040_102480275_102484524_102484639_102490493_102490617_102492473_102492570_102496009_102496188_102496890_102496960_102503461
ENSMUST00000162686.8	chr1	-	1097	8	FSM	ENSMUSG00000048495.17	ENSMUST00000162686.8	1847	8	301	449	301	-449	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCATCGGAATGCTATGACA	NA	NA	NA	NA	NA	NA	NA	NA	57445959	57427844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440527_57440683_57445542
ENSMUST00000162698.2	chr1	-	489	1	FSM	ENSMUSG00000089782.2	ENSMUST00000162698.2	489	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1652	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAAGCAACTTCTGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	97877114	97876625	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_97876600_97877100
ENSMUST00000162699.8	chr9	-	2808	14	NNC	ENSMUSG00000042790.17	novel	2287	14	NA	NA	8	128	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAATCAGGTTCCATTT	NA	NA	NA	NA	NA	NA	NA	NA	45818159	45775596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816067_45816218_45818035
ENSMUST00000162731.2	chr7	-	2489	1	FSM	ENSMUSG00000051550.11	ENSMUST00000162731.2	2489	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCGAGTGAGGCTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	4998339	4995850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_4995800_4998300
ENSMUST00000162739.8	chr6	-	2471	14	FSM	ENSMUSG00000003500.14	ENSMUST00000162739.8	2471	14	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATCCTGTTTCTGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	29216330	29200432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29216070
ENSMUST00000162850.2	chr14	-	465	6	ISM	ENSMUSG00000006289.15	ENSMUST00000162177.8	1219	11	7377	160	7377	-160	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGAAGAGCTTTCCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	51154768	51153302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154688
ENSMUST00000162866.7	chr1	-	475	5	NNC	ENSMUSG00000073481.10	novel	1917	8	NA	NA	18624	-692	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAATGTGAGGCTGTATAA	NA	NA	NA	NA	NA	NA	NA	NA	184559454	184545956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184559384
ENSMUST00000162957.8	chr14	-	1465	6	FSM	ENSMUSG00000035953.15	ENSMUST00000162957.8	1465	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	NA	NA	NA	NA	NA	NA	NA	51168269	51164671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51167040_51167148_51167590_51167782_51168069
ENSMUST00000162972.2	chr12	+	520	4	ISM	ENSMUSG00000021024.15	ENSMUST00000021412.9	1042	7	8608	6167	8608	-6023	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAACAGAGTCAACCAG	NA	NA	NA	NA	NA	NA	NA	NA	55454167	55459072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_55454349_55454786_55454869_55456911_55457068_55458971
ENSMUST00000162974.2	chr8	+	219	2	ISM	ENSMUSG00000004626.15	ENST00000414284.6	1836	19	4260	7063	4260	1587	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGACATCGAACAGGACA	NA	NA	NA	NA	NA	NA	NA	NA	3685415	3685719	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_3685531_3685615
ENSMUST00000163017.10	chr10	+	1650	3	FSM	ENSMUSG00000049641.16	ENSMUST00000163017.10	1650	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTGTTTTTTCCTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	51898597	51904567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_51898900_51901152_51901460_51903526
ENSMUST00000163048.8	chr10	+	1678	10	FSM	ENSMUSG00000063334.17	ENSMUST00000163048.8	5023	10	129	3216	0	535	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGGTGTAGGTGGTAGTG	NA	NA	NA	NA	NA	NA	NA	NA	111808697	111821121	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813143_111813219_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
ENSMUST00000163093.2	chr19	-	1378	5	FSM	ENSMUSG00000071573.15	ENSMUST00000163093.2	1378	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTCGTTTTATAGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	33369695	33115146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_33115675_33145721_33145898_33179874_33180049_33359766_33359926_33369354
ENSMUST00000163168.9	chr6	+	749	3	FSM	ENSMUSG00000042079.14	ENSMUST00000163168.9	2401	3	0	1652	0	-1652	multi-exon	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAAAGACAGGGAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	117883809	117900928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_117884170_117894430_117894560_117900668
ENSMUST00000163233.2	chrX	-	1256	3	FSM	ENSMUSG00000041353.13	ENSMUST00000163233.2	1256	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATATCTGACTTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	149223901	149191579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_149192597_149203337_149203438_149223762
ENSMUST00000163304.3	chr18	-	1323	1	FSM	ENSMUSG00000091697.3	ENSMUST00000163304.3	1323	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGATTATAAAGAAAAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	90330314	90328991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_90329000_90330300
ENSMUST00000163311.9	chr7	-	1288	6	FSM	ENSMUSG00000061479.16	ENSMUST00000163311.9	1288	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	26895185	26886431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868
ENSMUST00000163313.3	chr15	+	2492	3	FSM	ENSMUSG00000022296.11	ENSMUST00000163313.3	2492	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAATGGTTACAGAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	38796538	38814659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_38796717_38797304_38797472_38812512
ENSMUST00000163377.10	chr10	+	1158	3	FSM	ENSMUSG00000064030.16	ENSMUST00000163377.10	1158	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGTCAGGCTTTGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	128583757	128602432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_128583868_128601015_128601110_128601478
ENSMUST00000163489.2	chr17	+	1384	10	ISM	ENSMUSG00000023913.18	ENSMUST00000024706.12	2097	12	206	4795	206	-4795	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGCCCCTGGCCTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	43879365	43918297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_43879678_43899454_43899595_43905179_43905302_43905669_43905815_43907793_43907888_43909964_43910034_43911385_43911510_43913718_43913833_43915447_43915540_43918125
ENSMUST00000163492.8	chr17	-	2216	12	FSM	ENSMUSG00000023942.16	ENSMUST00000163492.8	2216	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	45903501	45896125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104
ENSMUST00000163493.4	chr17	+	1802	2	FSM	ENSMUSG00000091475.5	ENSMUST00000163493.4	1802	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCCCTTGAATGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	25789331	25794017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_25790076_25792959
ENSMUST00000163506.3	chr15	-	1771	14	FSM	ENSMUSG00000037570.17	ENSMUST00000163506.3	1771	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAAGTAGCTTCTTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	99149826	99140706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99149742
ENSMUST00000163552.2	chr14	-	725	2	NNC	ENSMUSG00000021910.16	novel	4990	17	NA	NA	14942	-3497	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCTGGCACAAGCAGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	30898545	30896383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr14_-_30896850_30898286
ENSMUST00000163600.8	chr13	+	1055	9	FSM	ENSMUSG00000021548.11	ENSMUST00000163600.8	1055	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGATTGTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	85337595	85361029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350559_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
ENSMUST00000163602.9	chr10	-	1609	6	NIC	ENSMUSG00000052151.13	novel	1654	6	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCATGTTGATTTTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	79369626	79362263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369498
ENSMUST00000163694.4	chr9	+	2041	11	FSM	ENSMUSG00000032294.18	ENSMUST00000163694.4	2041	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGATGACGACTTCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	59563855	59586472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582311_59582479_59585326_59585509_59586010
ENSMUST00000163717.2	chr17	+	1920	9	FSM	ENSMUSG00000034681.18	ENSMUST00000163717.2	1920	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGCTGGTTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	24633648	24644869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_24633709_24634014_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUST00000163749.3	chr18	+	442	1	FSM	ENSMUSG00000091695.3	ENSMUST00000163749.3	442	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGAAGGCCCCATAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	67695463	67695905	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_67695500_67695900
ENSMUST00000163810.9	chrX	+	1833	9	FSM	ENSMUSG00000035299.17	ENSMUST00000163810.9	3689	9	0	1856	0	-261	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCCACAACCACTGGGCG	NA	NA	NA	NA	NA	NA	NA	NA	168709946	168771938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_168710666_168749058_168749155_168759917_168760026_168764880_168765030_168766951_168767080_168767994_168768139_168768892_168769094_168770554_168770763_168771858
ENSMUST00000163812.9	chr7	+	3026	14	FSM	ENSMUSG00000038943.17	ENSMUST00000163812.9	3026	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTTGTCTTCAATGG	NA	NA	NA	NA	NA	NA	NA	NA	79944197	79966007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79964861
ENSMUST00000163837.2	chr8	-	1272	13	FSM	ENSMUSG00000031708.18	ENSMUST00000163837.2	1272	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	84321058	84298328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300337_84300552_84301106_84301158_84320968
ENSMUST00000163864.2	chr9	-	910	1	FSM	ENSMUSG00000091866.2	ENSMUST00000163864.2	910	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGCTCCAGCCTTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	63351357	63350447	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_63350400_63351400
ENSMUST00000163946.2	chr4	-	762	3	FSM	ENSMUSG00000078570.11	ENSMUST00000163946.2	762	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGACCTTTCTTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	124744523	124743277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_124743756_124744024_124744227_124744441
ENSMUST00000163946.2-0	chr4	-	492	3	FSM	ENSMUSG00000078570.11	ENSMUST00000163946.2	762	3	0	270	0	-209	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCCTCAGCCTGGGATGG	NA	NA	NA	NA	NA	NA	NA	NA	124744523	124743547	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_124743756_124744024_124744227_124744441
ENSMUST00000163967.2	chr2	-	1210	5	FSM	ENSMUSG00000009214.10	ENSMUST00000163967.2	1210	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGTCTGTCTGCTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	26957880	26951649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_26952350_26952713_26952831_26956302_26956452_26957364_26957480_26957751
ENSMUST00000163991.4	chr15	+	1514	7	FSM	ENSMUSG00000071724.6	ENSMUST00000163991.4	1909	7	0	395	0	-395	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTTCAAGTGGTATGCTC	NA	NA	NA	NA	NA	NA	NA	NA	76178547	76180701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76179492_76179589_76179663_76179883_76180025_76180094_76180185_76180277_76180342_76180425_76180562_76180635
ENSMUST00000163995.8	chr5	-	805	6	ISM	ENSMUSG00000004530.13	ENSMUST00000004646.13	3491	11	57896	2807	57896	-2807	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCTGGACAGCAAGCCGG	NA	NA	NA	NA	NA	NA	NA	NA	113988923	113983303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711
ENSMUST00000164079.9	chr9	+	1005	6	FSM	ENSMUSG00000031939.17	ENSMUST00000164079.9	1005	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGTTGCTTGATTTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	15217559	15223094	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
ENSMUST00000164119.3	chr7	-	784	5	FSM	ENSMUSG00000040212.13	ENSMUST00000164119.3	784	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGACTCGGCTCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	45570275	45567451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_45567660_45568741_45568883_45569358_45569462_45569712_45569829_45570059
ENSMUST00000164127.8	chr13	+	1283	8	FSM	ENSMUSG00000021548.11	ENSMUST00000164127.8	1718	8	29	406	0	-406	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGTTATGTTCAGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	85337595	85360324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972
ENSMUST00000164166.8	chr3	+	1804	12	FSM	ENSMUSG00000001416.14	ENSMUST00000164166.8	1804	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCGTTGTCATGTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	88204480	88229073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_88204574_88206648_88206711_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
ENSMUST00000164169.2	chr12	-	549	1	FSM	ENSMUSG00000091105.2	ENSMUST00000164169.2	549	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGCCTGAGAGCGCGCC	NA	NA	NA	NA	NA	NA	NA	NA	21826708	21826159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_21826200_21826700
ENSMUST00000164199.8	chr10	-	1371	6	FSM	ENSMUSG00000025374.14	ENSMUST00000164199.8	1371	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCTGTGTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	128245597	128237263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115
ENSMUST00000164202.9	chr19	+	4892	14	FSM	ENSMUSG00000043639.16	ENSMUST00000164202.9	4892	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAGCATCAGCTTAACCC	NA	NA	NA	NA	NA	NA	NA	NA	53665736	53853811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_53666024_53801678_53802772_53803946_53804009_53805576_53805669_53806353_53806452_53821076_53821221_53823078_53823211_53829409_53829490_53831653_53832276_53838532_53838620_53839607_53840248_53841934_53842067_53847822_53847945_53852510
ENSMUST00000164209.9	chr19	-	801	3	FSM	ENSMUSG00000094936.9	ENSMUST00000164209.9	801	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTATTGGATTTGGGAGT	NA	NA	NA	NA	NA	NA	NA	NA	4843928	4835302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4835596_4842425_4842849_4843843
ENSMUST00000164259.9	chr10	-	2627	15	FSM	ENSMUSG00000040462.14	ENSMUST00000164259.9	2627	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCATCAGGCTCTGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	126957000	126931520	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_126932242_126932498_126932612_126932783_126932949_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
ENSMUST00000164296.8	chr2	-	2791	12	FSM	ENSMUSG00000026918.17	ENSMUST00000164296.8	2791	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAACAAACAAACAAA	NA	NA	NA	NA	NA	NA	NA	NA	27354128	27337854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_27338382_27338411_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900
ENSMUST00000164302.8	chr1	+	2088	12	FSM	ENSMUSG00000038305.16	ENSMUST00000164302.8	2088	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGCTTGCTCTTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	57813913	57986124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_57813961_57838463_57838514_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982401_57985229
ENSMUST00000164330.2	chr3	-	1425	1	FSM	ENSMUSG00000091575.3	ENSMUST00000164330.2	1425	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGAGTGGGATTAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	106390753	106389328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_106389300_106390800
ENSMUST00000164359.8	chr11	-	1281	7	FSM	ENSMUSG00000078812.11	ENSMUST00000164359.8	1281	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCAGTTGTTTATTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	69811911	69807539	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811849
ENSMUST00000164378.8	chr5	-	3026	12	FSM	ENSMUSG00000029405.17	ENSMUST00000164378.8	3026	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGTTCTTCAGTTAAC	NA	NA	NA	NA	NA	NA	NA	NA	92231097	92201575	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92230608
ENSMUST00000164386.8	chr12	-	1043	6	FSM	ENSMUSG00000021139.18	ENSMUST00000164386.8	1043	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGAAATTGCTCTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	81579679	81405633	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
ENSMUST00000164399.8	chr2	+	314	3	FSM	ENSMUSG00000035268.15	ENSMUST00000164399.8	983	3	29	640	0	-170	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGAACACCTCATCCTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	163500334	163567438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_163500413_163563047_163563222_163567376
ENSMUST00000164428.3	chr10	+	858	2	FSM	ENSMUSG00000090439.4	ENSMUST00000164428.3	858	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTCTAGACCTTTACTCT	NA	NA	NA	NA	NA	NA	NA	NA	60235504	60239338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_60235756_60238731
ENSMUST00000164472.8	chr6	+	1098	3	FSM	ENSMUSG00000059689.16	ENSMUST00000164472.8	1098	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGTATTTTTCATAATT	NA	NA	NA	NA	NA	NA	NA	NA	117818202	117822916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_117818230_117820213_117820354_117821985
ENSMUST00000164479.9	chr7	+	1375	8	FSM	ENSMUSG00000030688.16	ENSMUST00000164479.9	1375	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTTTGTGCCTGCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	100966325	100995518	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_100966435_100970456_100970560_100970920_100971241_100991704_100991853_100992390_100992495_100993123_100993242_100994841_100994895_100995098
ENSMUST00000164505.2	chr10	-	1110	7	FSM	ENSMUSG00000061904.13	ENSMUST00000164505.2	1483	7	249	124	-9	-102	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGATCAGTGTTGAAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	90959568	90952793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419
ENSMUST00000164508.2	chr17	+	701	6	FSM	ENSMUSG00000045744.12	ENSMUST00000164508.2	701	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGGTCAGTAAGCTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	24692940	24694361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_24692962_24693092_24693213_24693378_24693535_24693612_24693715_24693963_24694118_24694213
ENSMUST00000164543.2	chr19	-	341	2	ISM	ENSMUSG00000025204.11	ENSMUST00000026222.11	680	5	2560	15	2532	-15	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	562	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGCTCTGGTTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	44541319	44538693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_44538852_44541136
ENSMUST00000164551.2	chr2	-	1284	4	FSM	ENSMUSG00000034800.16	ENSMUST00000164551.2	1284	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCGGGCCTTCCTGCGAG	NA	NA	NA	NA	NA	NA	NA	NA	127423428	127418854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395
ENSMUST00000164574.2	chr1	-	597	2	FSM	ENSMUSG00000090553.9	ENSMUST00000164574.2	597	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGACATCTCAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	133537953	133536598	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_133536698_133537455
ENSMUST00000164589.9	chr7	-	1293	8	FSM	ENSMUSG00000030590.16	ENSMUST00000164589.9	1293	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATCTTGTTTCTGTTAG	NA	NA	NA	NA	NA	NA	NA	NA	28855659	28851934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309_28855456_28855554
ENSMUST00000164591.3	chr10	+	1974	7	NNC	ENSMUSG00000020009.14	novel	2112	7	NA	NA	124	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACTTGGATATTCATTTA	NA	NA	NA	NA	NA	NA	NA	NA	19467820	19485977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_+_19467946_19473163_19473265_19477067_19477232_19479501_19479681_19481981_19482169_19483004_19483130_19484884
ENSMUST00000164609.8	chrX	-	1811	4	FSM	ENSMUSG00000031422.17	ENSMUST00000164609.8	1811	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	135643667	135633701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135643572
ENSMUST00000164614.3	chr15	-	1974	3	FSM	ENSMUSG00000047878.14	ENSMUST00000164614.3	1974	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTGGCTTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	83135932	83111080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_83112796_83114714_83114859_83135817
ENSMUST00000164688.2	chr15	+	1020	3	FSM	ENSMUSG00000023048.14	ENSMUST00000164688.2	1020	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTCTACTCACCTGTGCC	NA	NA	NA	NA	NA	NA	NA	NA	102368517	102371211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102368582_102368804_102369155_102370605
ENSMUST00000164699.2	chr13	+	768	1	FSM	ENSMUSG00000090475.2	ENSMUST00000164699.2	768	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTTATTTTTGAGATA	NA	NA	NA	NA	NA	NA	NA	NA	40931515	40932283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_40931500_40932300
ENSMUST00000164710.8	chr7	+	2786	10	FSM	ENSMUSG00000030782.18	ENSMUST00000164710.8	3788	10	59	943	0	-943	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAAGAACTAAAATCAAA	NA	NA	NA	NA	NA	NA	NA	NA	127846042	127853928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_127846181_127847591_127847645_127847749_127847893_127848058_127848147_127848261_127848368_127848471_127848667_127851248_127851423_127851649_127851732_127851955_127852105_127852270
ENSMUST00000164712.2	chr8	-	375	1	FSM	ENSMUSG00000090334.2	ENSMUST00000164712.2	375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	712	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTTTTTTATAAAGATTT	NA	NA	NA	NA	NA	NA	NA	NA	18707005	18706630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_18706600_18707000
ENSMUST00000164750.8	chr11	-	2336	13	FSM	ENSMUSG00000017724.15	ENSMUST00000164750.8	2336	13	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTCTTTGCTTCCAT	NA	NA	NA	NA	NA	NA	NA	NA	101676136	101660567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665072_101666143_101666268_101667918_101667973_101674792_101674841_101675055_101675150_101675342_101675454_101675933
ENSMUST00000164756.4	chr2	+	1691	1	FSM	ENSMUSG00000091337.4	ENSMUST00000164756.4	1691	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTTTGTCTAATAGCT	NA	NA	NA	NA	NA	NA	NA	NA	125515014	125516705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_125515000_125516700
ENSMUST00000164766.8	chr14	+	1884	5	FSM	ENSMUSG00000022176.12	ENSMUST00000164766.8	1884	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAAGTTTATCTTGGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	54713556	54717888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_54713832_54714927_54715273_54715484_54715559_54716410_54716619_54716906
ENSMUST00000164773.2	chr10	+	1078	2	FSM	ENSMUSG00000020205.9	ENSMUST00000164773.2	1949	2	871	0	871	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTAAAGGTCTCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	111343017	111344506	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_111343510_111343920
ENSMUST00000164807.2	chr8	+	1175	5	FSM	ENSMUSG00000005161.16	ENSMUST00000164807.2	1175	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAATAGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	85696867	85701289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ENSMUST00000164828.8	chr3	-	2051	5	FSM	ENSMUSG00000040374.14	ENSMUST00000164828.8	2051	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTAGAGGTCTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	5641210	5625247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_5626825_5628224_5628333_5628679_5628790_5635546_5635690_5641097
ENSMUST00000164838.3	chr12	+	1850	2	FSM	ENSMUSG00000092019.5	ENSMUST00000164838.3	1850	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAAAGATTAATGC	NA	NA	NA	NA	NA	NA	NA	NA	87665638	87669725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_87665828_87668064
ENSMUST00000164884.9	chr8	-	918	5	FSM	ENSMUSG00000031879.15	ENSMUST00000164884.9	918	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTAGCGTCTCTCATAG	NA	NA	NA	NA	NA	NA	NA	NA	105368597	105366469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_105366719_105367151_105367198_105367599_105367726_105367942_105368023_105368180
ENSMUST00000164887.3	chr4	-	1251	7	FSM	ENSMUSG00000028778.16	ENSMUST00000164887.3	1251	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGCCGGCCCAGGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	130031421	130024633	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_130024798_130026426_130026549_130027487_130027715_130029062_130029179_130029457_130029702_130030904_130031084_130031222
ENSMUST00000164891.8	chr11	-	1454	3	FSM	ENSMUSG00000018648.16	ENSMUST00000164891.8	1454	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGCCCTTTATTAATCAT	NA	NA	NA	NA	NA	NA	NA	NA	83959405	83938870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_83940137_83941657_83941747_83959306
ENSMUST00000164916.9	chr16	+	1073	5	FSM	ENSMUSG00000075229.12	ENSMUST00000164916.9	1073	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTTATTTGGTGACTTT	NA	NA	NA	NA	NA	NA	NA	NA	35892054	35912490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_35892508_35903060_35903187_35905386_35905534_35910270_35910331_35912203
ENSMUST00000164927.2	chr11	-	1379	4	FSM	ENSMUSG00000025575.15	ENSMUST00000164927.2	1379	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCGTTTGCTTTTTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	118306620	118298469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118306555
ENSMUST00000164957.8	chr15	+	1055	4	FSM	ENSMUSG00000023048.14	ENSMUST00000164957.8	1055	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCACCTGTGCCATTACC	NA	NA	NA	NA	NA	NA	NA	NA	102367636	102371217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102367691_102368542_102368582_102368804_102369155_102370605
ENSMUST00000164993.2	chr13	+	1529	3	FSM	ENSMUSG00000041324.15	ENSMUST00000164993.2	1529	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACTAAACAAAACAACCAGA	NA	NA	NA	NA	NA	NA	NA	NA	16189059	16201796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_16189118_16191766_16192269_16200827
ENSMUST00000165027.9	chr12	-	1293	11	FSM	ENSMUSG00000001627.13	ENSMUST00000165027.9	1293	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTGAATTTGATGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	40267512	40253360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_40253451_40253917_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263976_40264135_40266188_40266314_40267156_40267242_40267376
ENSMUST00000165032.9	chr18	+	1410	7	FSM	ENSMUSG00000024535.17	ENSMUST00000165032.9	1977	7	107	460	0	-363	multi-exon	TRUE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTACACCCACGCCGCTG	NA	NA	NA	NA	NA	NA	NA	NA	53378840	53523532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_53378925_53460483_53460568_53473201_53473307_53516141_53516237_53517688_53517722_53518249_53518315_53522588
ENSMUST00000165033.2	chr18	+	1999	3	FSM	ENSMUSG00000038418.8	ENSMUST00000165033.2	3036	3	0	1037	0	-1037	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTCACTTACCATCCCT	NA	NA	NA	NA	NA	NA	NA	NA	34994259	34996972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_34994387_34994422_34994840_34995517
ENSMUST00000165055.2	chr7	+	630	5	ISM	ENSMUSG00000030889.15	ENST00000389398.10	3338	29	42345	10224	-16613	-10224	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCTCCTTGTCTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	120381615	120389469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_120381642_120381812_120381958_120383191_120383388_120385646_120385718_120389277
ENSMUST00000165086.8	chr18	-	2778	9	FSM	ENSMUSG00000063889.17	ENSMUST00000165086.8	2778	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGTGTGTATGTCT	NA	NA	NA	NA	NA	NA	NA	NA	3337589	3266355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_3268130_3273421_3273579_3276693_3276730_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3327493_3327592_3337379
ENSMUST00000165114.2	chr12	-	1934	3	FSM	ENSMUSG00000021127.8	ENSMUST00000165114.2	1934	3	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAACAAAAAAAAACA	NA	NA	NA	NA	NA	NA	NA	NA	80159772	80155471	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_80156206_80156302_80157323_80159592
ENSMUST00000165126.9	chr8	-	387	3	FSM	ENSMUSG00000090137.9	ENSMUST00000165126.9	387	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTGGTCATACCTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	70962273	70960981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_70961179_70961945_70962033_70962170
ENSMUST00000165164.9	chr6	+	918	9	FSM	ENSMUSG00000069678.11	ENSMUST00000165164.9	918	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCATCTTCCTTCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	83055326	83057836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
ENSMUST00000165198.2	chr7	-	789	1	FSM	ENSMUSG00000044609.7	ENSMUST00000165198.2	789	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATGCTAGGAAAGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	42603812	42603023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_42603000_42603800
ENSMUST00000165217.2	chr3	-	2178	10	ISM	ENSMUSG00000028024.15	ENSMUST00000029658.14	4181	20	0	29419	0	-29404	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGGTGTTGAACATGAGT	NA	NA	NA	NA	NA	NA	NA	NA	129126369	129092242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_129092631_129092746_129092813_129097363_129097430_129099055_129099191_129102670_129102785_129103417_129103573_129106209_129106331_129113028_129113161_129115008_129115151_129125510
ENSMUST00000165229.4	chr18	-	370	1	FSM	ENSMUSG00000091449.4	ENSMUST00000165229.4	370	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGATGACAACGACAACAAA	NA	NA	NA	NA	NA	NA	NA	NA	20816020	20815650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_20815600_20816000
ENSMUST00000165234.2	chr2	-	1626	12	FSM	ENSMUSG00000038383.17	ENSMUST00000165234.2	1626	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTTGTTCTGATGACATG	NA	NA	NA	NA	NA	NA	NA	NA	155199344	155120163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_155120570_155134609_155134753_155139002_155139128_155140965_155141110_155143120_155143276_155156421_155156520_155170500_155170602_155173071_155173179_155177280_155177344_155178601_155178662_155187567_155187633_155199185
ENSMUST00000165246.2	chr7	-	380	2	NNC	ENSMUSG00000045948.9	novel	883	2	NA	NA	1703	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGTGCGGTGTCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	28439492	28439065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_28439405_28439451
ENSMUST00000165307.8	chr3	+	2579	7	FSM	ENSMUSG00000015749.13	ENSMUST00000165307.8	3274	7	32	663	0	-542	multi-exon	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTCAACTTCACATGTCT	NA	NA	NA	NA	NA	NA	NA	NA	95836589	95854039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
ENSMUST00000165307.8-1	chr3	+	2586	7	FSM	ENSMUSG00000015749.13	ENSMUST00000165307.8	3274	7	336	352	0	-231	multi-exon	FALSE	canonical	NA	NA	NA	NA	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAACGCATAGGGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	95836893	95854350	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
ENSMUST00000165309.8	chr3	-	2038	6	FSM	ENSMUSG00000040374.14	ENSMUST00000165309.8	2038	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTAGAGGTCTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	5641210	5625247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5630192_5630259_5641097
ENSMUST00000165392.8	chr6	-	1643	4	FSM	ENSMUSG00000032641.19	ENSMUST00000165392.8	1643	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCTGTGGATTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	134874778	134846055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_134847407_134864592_134864749_134874124_134874177_134874694
ENSMUST00000165394.9	chr7	-	1228	7	FSM	ENSMUSG00000005575.17	ENSMUST00000165394.9	1228	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATGGAAGAATCGGCTAAT	NA	NA	NA	NA	NA	NA	NA	NA	12772202	12769046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12771547_12771633_12771996
ENSMUST00000165488.4	chr7	-	276	1	FSM	ENSMUSG00000090467.4	ENSMUST00000165488.4	276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGCCCTGCTGTCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	25528302	25528026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_25528000_25528300
ENSMUST00000165524.9	chr7	+	764	6	ISM	ENSMUSG00000078765.12	ENSMUST00000167361.8	860	8	529	0	523	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGTGGTTTCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	30263303	30264786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUST00000165532.3	chr9	+	642	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	0	367	0	-139	multi-exon	FALSE	canonical	NA	NA	NA	NA	601	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGCTGCAGGCCAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	120400509	120403353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
ENSMUST00000165536.8	chr5	+	1195	6	FSM	ENSMUSG00000029178.15	ENSMUST00000165536.8	5221	6	189	3837	189	-42	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATCAAACCTTTCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	64960919	64986407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_64961135_64974077_64974174_64979216_64979701_64980221_64980373_64984452_64984614_64986319
ENSMUST00000165561.4	chr13	+	1391	2	FSM	ENSMUSG00000091264.4	ENSMUST00000165561.4	4483	2	0	3092	0	-3092	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGGAAGAGACCCACAAG	NA	NA	NA	NA	NA	NA	NA	NA	41403319	41426961	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_41403791_41426041
ENSMUST00000165565.8	chr11	+	2311	11	FSM	ENSMUSG00000017421.19	ENSMUST00000165565.8	2311	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTTTGATACATGATTG	NA	NA	NA	NA	NA	NA	NA	NA	80274104	80287071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
ENSMUST00000165630.3	chr8	+	2267	15	FSM	ENSMUSG00000042870.16	ENSMUST00000165630.3	2267	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTCTGGCGGAAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	75760332	75796749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_75760456_75774620_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877
ENSMUST00000165671.8	chr15	+	830	4	FSM	ENSMUSG00000001289.13	ENSMUST00000165671.8	830	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTTAATAAATGTGACCGC	NA	NA	NA	NA	NA	NA	NA	NA	102234825	102239897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102235285_102236956_102237032_102237146_102237253_102239707
ENSMUST00000165677.2	chr11	-	669	2	FSM	ENSMUSG00000083705.3	ENSMUST00000165677.2	669	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCTGCTCTAGAGCAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	117312543	117311462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_117311954_117312365
ENSMUST00000165717.4	chr15	+	374	5	ISM	ENSMUSG00000001289.13	ENSMUST00000166658.8	1062	6	294	566	19	-42	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACAGCCCTGGGGGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	102234844	102239742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_102234971_102235252_102235285_102236956_102237032_102237146_102237253_102239707
ENSMUST00000165717.4-0	chr15	+	477	5	ISM	ENSMUSG00000001289.13	ENSMUST00000166658.8	1062	6	294	463	19	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCAATGGCCTCCTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	102234844	102239845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_102234971_102235252_102235285_102236956_102237032_102237146_102237253_102239707
ENSMUST00000165738.8	chr15	-	3367	10	FSM	ENSMUSG00000063268.13	ENSMUST00000165738.8	3367	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAGAAGGACCGGCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	76127620	76117202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_76117807_76117897_76118073_76124248_76124383_76124486_76125132_76125355_76125429_76125525_76125748_76125857_76126523_76126602_76126840_76126931_76127187_76127263
ENSMUST00000165740.9	chr8	-	1120	12	FSM	ENSMUSG00000031708.18	ENSMUST00000165740.9	1120	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	84321113	84298328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300499_84300552_84301106_84301158_84320968
ENSMUST00000165766.9	chr9	+	3063	21	FSM	ENSMUSG00000033335.18	ENSMUST00000165766.9	3063	21	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACTCTGCAGATGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	21336203	21419050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21390194_21390334_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21418718
ENSMUST00000165797.2	chr19	+	629	2	ISM	ENSMUSG00000024772.10	ENSMUST00000025684.4	3353	5	200	18704	200	-18704	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCAGATGACAGACTTCT	NA	NA	NA	NA	NA	NA	NA	NA	6326954	6331422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_6327409_6331247
ENSMUST00000165839.3	chr9	+	2086	8	FSM	ENSMUSG00000032114.10	ENSMUST00000165839.3	2086	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCAGTGGCTCATCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	44309472	44314263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
ENSMUST00000165842.3	chr3	+	1562	4	FSM	ENSMUSG00000028102.16	ENSMUST00000165842.3	1562	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTTTATTCAATTCA	NA	NA	NA	NA	NA	NA	NA	NA	96543148	96552042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_96543241_96543989_96544106_96544446_96544649_96550890
ENSMUST00000165853.2	chr4	+	1101	6	FSM	ENSMUSG00000028788.15	ENSMUST00000165853.2	3382	6	13	2268	13	-215	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAACAGCTGCTTTACTT	NA	NA	NA	NA	NA	NA	NA	NA	129714513	129741528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_129714593_129732770_129733472_129736462_129736556_129738854_129738986_129740257_129740333_129741506
ENSMUST00000165861.8	chr4	+	2537	13	FSM	ENSMUSG00000028759.14	ENSMUST00000165861.8	3361	13	0	824	0	-802	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGTCCCCTCACAGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	137944441	137969657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_137944606_137948836_137949035_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
ENSMUST00000165953.3	chr17	+	1381	11	FSM	ENSMUSG00000024369.17	ENSMUST00000165953.3	1381	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTATTGTAACTGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	35069383	35075348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35069439_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
ENSMUST00000165965.8	chr19	-	2874	18	FSM	ENSMUSG00000024969.16	ENSMUST00000165965.8	2874	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	7318798	7254123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
ENSMUST00000165971.3	chr10	-	2532	10	FSM	ENSMUSG00000019917.11	ENSMUST00000165971.3	2532	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATCTATGTATTTCCTAA	NA	NA	NA	NA	NA	NA	NA	NA	59057669	58999941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_59000767_59002325_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057212
ENSMUST00000166015.2	chr10	+	470	5	ISM	ENSMUSG00000004929.13	ENSMUST00000005057.7	2832	13	3244	4067	3244	-4067	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCTCTGGAGAAGGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	80909112	80914326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_80909200_80911344_80911494_80912776_80912885_80913746_80913850_80914303
ENSMUST00000166033.6	chr3	+	791	8	FSM	ENSMUSG00000078578.10	ENSMUST00000166033.6	2504	8	49	1664	-36	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATTACTGTTCCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	135144289	135171047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_135144460_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUST00000166040.9	chr17	-	1139	9	FSM	ENSMUSG00000015474.17	ENSMUST00000166040.9	1139	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCCCACCAGGGCTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	34847013	34836202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846906
ENSMUST00000166075.8	chr14	+	1582	6	NNC	ENSMUSG00000021877.13	novel	2165	6	NA	NA	-121	-13	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATTTGGAATTATTCCT	NA	NA	NA	NA	NA	NA	NA	NA	26359380	26377956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr14_+_26359642_26367813_26367895_26368042_26368179_26374260_26374333_26374991_26375118_26377050
ENSMUST00000166078.9	chr8	-	2234	15	FSM	ENSMUSG00000031575.19	ENSMUST00000166078.9	2234	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCTTCACTGGAAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	26330110	26306897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039
ENSMUST00000166115.9	chr19	-	1858	7	FSM	ENSMUSG00000024958.14	ENSMUST00000166115.9	1858	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTCTGTTCCTTCTCACC	NA	NA	NA	NA	NA	NA	NA	NA	6918561	6915424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6915898_6916123_6916243_6916379_6916509_6916628_6916779_6916896_6917123_6917719_6917770_6917850
ENSMUST00000166120.9	chr12	-	990	6	FSM	ENSMUSG00000021079.17	ENSMUST00000166120.9	990	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTTGTCTTTACTGTA	NA	NA	NA	NA	NA	NA	NA	NA	71183422	71169947	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71179280_71179417_71183328
ENSMUST00000166142.10	chr15	+	1632	7	FSM	ENSMUSG00000033287.17	ENSMUST00000166142.10	1632	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTTTCTCTGGGCCACT	NA	NA	NA	NA	NA	NA	NA	NA	78312763	78323503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321783_78321872_78322686
ENSMUST00000166169.4	chr14	-	3017	6	FSM	ENSMUSG00000049295.18	ENSMUST00000166169.4	3017	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGCCCTGTGTGTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	52257145	52243542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52252404_52252510_52256951
ENSMUST00000166179.9	chr15	-	1058	4	FSM	ENSMUSG00000018893.16	ENSMUST00000166179.9	1058	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTCTCCGTCCGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	76934870	76899686	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_76900273_76901775_76901999_76906688_76906792_76934724
ENSMUST00000166282.3	chr2	+	1801	3	FSM	ENSMUSG00000037885.19	ENSMUST00000166282.3	5445	3	0	3644	0	-331	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTACCTTTCATCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	129642436	129670563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_129642767_129643323_129643925_129669693
ENSMUST00000166311.2	chr15	+	686	4	ISM	ENSMUSG00000022471.15	ENST00000420392.1	1680	11	6409	10292	-2743	-10292	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGTGTGTGGAGAAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	81909589	81913793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_81909890_81911425_81911613_81913322_81913492_81913763
ENSMUST00000166335.2	chr9	-	1053	2	FSM	ENSMUSG00000013822.8	ENSMUST00000166335.2	1053	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGCCGCTGTACTTCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	22025465	22024284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_22024976_22025103
ENSMUST00000166409.6	chr5	+	1562	6	FSM	ENSMUSG00000029178.15	ENSMUST00000166409.6	1562	6	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACGACCAATTTGTCGGTT	NA	NA	NA	NA	NA	NA	NA	NA	64969681	64986825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_64969847_64974078_64974174_64979216_64979701_64980221_64980373_64984452_64984614_64986319
ENSMUST00000166411.8	chr2	+	2088	12	FSM	ENSMUSG00000068882.14	ENSMUST00000166411.8	2088	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCTCACTTTGGACATA	NA	NA	NA	NA	NA	NA	NA	NA	69691905	69702190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_69692084_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUST00000166412.2	chr19	+	447	4	FSM	ENSMUSG00000036372.15	ENSMUST00000166412.2	447	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATGTCCATTCTTAGGG	NA	NA	NA	NA	NA	NA	NA	NA	10183396	10185188	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_10183489_10183787_10183898_10184527_10184665_10185080
ENSMUST00000166418.4	chr15	+	204	1	FSM	ENSMUSG00000096173.3	ENSMUST00000166418.4	204	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCATCTATCTTGAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	72785205	72785409	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_72785200_72785400
ENSMUST00000166427.8	chr15	+	2577	11	FSM	ENSMUSG00000058586.13	ENSMUST00000166427.8	2577	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCAAGTGGCTGTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	82984494	83000875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_82985995_82986072_82986187_82986499_82986542_82986825_82986846_82987134_82987210_82988509_82988623_82989811_82989892_82996410_82996446_82998557_82998641_82999767_82999865_83000457
ENSMUST00000166435.2	chr15	+	1644	3	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	26396	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTTTTCGGAATGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	100152095	100159125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_100152155_100152234_100152395_100157700
ENSMUST00000166478.8	chrX	-	1720	3	FSM	ENSMUSG00000031422.17	ENSMUST00000166478.8	1720	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	135644435	135633701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_135635251_135636294_135636372_135644341
ENSMUST00000166489.8	chr4	+	2493	7	FSM	ENSMUSG00000023286.17	ENSMUST00000166489.8	3339	7	79	767	41	-767	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGATTTCAAGACAGGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	156028366	156043294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_156028608_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ENSMUST00000166518.8	chrX	+	800	6	FSM	ENSMUSG00000002014.13	ENSMUST00000166518.8	800	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACACGGGGCTCCTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	72830633	72834430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_72830913_72832440_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ENSMUST00000166526.9	chr17	-	923	8	FSM	ENSMUSG00000061613.14	ENSMUST00000166526.9	923	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	NA	NA	NA	NA	NA	NA	NA	31877743	31866054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31871475_31871543_31873952_31874041_31877626
ENSMUST00000166543.10	chr17	-	2717	10	FSM	ENSMUSG00000024096.18	ENSMUST00000166543.10	3799	10	141	941	141	-287	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGAGTGGCTTCTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	66192652	66156701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66192180
ENSMUST00000166558.8	chr19	+	848	7	ISM	ENSMUSG00000024909.16	ENSMUST00000165485.8	1557	11	19	3487	13	-3356	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCCCCCCCTCTGCCGCC	NA	NA	NA	NA	NA	NA	NA	NA	5524734	5528394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_5524803_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228
ENSMUST00000166565.2	chr10	+	360	2	ISM	ENSMUSG00000020111.16	ENSMUST00000092508.12	2294	13	158890	720	158890	-720	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGTGGTGCCCACCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	59697339	59699225	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_59697475_59699000
ENSMUST00000166583.4	chr12	-	948	1	FSM	ENSMUSG00000071414.6	ENSMUST00000166583.4	948	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2363	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCTGTGGCGAGCGGAT	NA	NA	NA	NA	NA	NA	NA	NA	13505971	13505023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_13505000_13506000
ENSMUST00000166603.2	chr10	+	1078	6	FSM	ENSMUSG00000020307.16	ENSMUST00000166603.2	1078	6	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCTGAGAGAATCACCT	NA	NA	NA	NA	NA	NA	NA	NA	79518137	79524228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_79518159_79518233_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
ENSMUST00000166617.8	chr17	+	1528	6	FSM	ENSMUSG00000047428.15	ENSMUST00000166617.8	1528	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGCTTCTGTGGAAGGGA	NA	NA	NA	NA	NA	NA	NA	NA	46608853	46614197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_46609005_46609493_46609625_46609873_46609938_46611876_46612008_46612569_46612715_46613291
ENSMUST00000166619.8	chr17	-	2238	6	NNC	ENSMUSG00000025730.15	novel	2506	6	NA	NA	5874	-3	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTTGTGTCTGGCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	26132606	26101090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26132583
ENSMUST00000166627.8	chr17	+	1020	7	FSM	ENSMUSG00000073423.11	ENSMUST00000166627.8	1211	7	37	154	37	-154	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTCAGGGTGGCTCTGAT	NA	NA	NA	NA	NA	NA	NA	NA	33848100	33850536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_33848191_33848595_33848673_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
ENSMUST00000166658.8	chr15	+	486	6	FSM	ENSMUSG00000001289.13	ENSMUST00000166658.8	1062	6	52	524	20	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGCACTGCAGAAATGAA	NA	NA	NA	NA	NA	NA	NA	NA	102234602	102239784	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102234696_102234867_102234971_102235252_102235285_102236956_102237032_102237146_102237253_102239707
ENSMUST00000166687.6	chr3	-	1922	9	FSM	ENSMUSG00000041263.15	ENSMUST00000166687.6	1922	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATATGTGTCCCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	88997352	88991287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_88991958_88994079_88994203_88995025_88995576_88996106_88996154_88996306_88996413_88996483_88996659_88996791_88996869_88996975_88997075_88997277
ENSMUST00000166693.3	chr17	-	271	4	FSM	ENSMUSG00000067288.14	ENSMUST00000166693.3	271	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	NA	NA	NA	NA	NA	NA	NA	34043450	34042025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34042068_34042166_34042305_34043272_34043321_34043407
ENSMUST00000166716.8	chr9	-	2219	15	FSM	ENSMUSG00000032492.15	ENSMUST00000166716.8	2219	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGATGCCTGGGTCTCGAA	NA	NA	NA	NA	NA	NA	NA	NA	110572754	110551155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_110551703_110552653_110552696_110552777_110552920_110553466_110553562_110553794_110553862_110554180_110554242_110555510_110555665_110556037_110556234_110556478_110556574_110556745_110556865_110556965_110557077_110558662_110558798_110560605_110560709_110571293_110571414_110572522
ENSMUST00000166743.9	chr14	+	3833	4	FSM	ENSMUSG00000021840.18	ENSMUST00000166743.9	4542	4	0	709	0	-709	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTCTCCCAAATTCTG	NA	NA	NA	NA	NA	NA	NA	NA	47535725	47559843	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868
ENSMUST00000166750.9	chr8	+	2408	21	FSM	ENSMUSG00000034390.17	ENSMUST00000166750.9	2408	21	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAACAAAAAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	117983802	118186169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_117984141_118103813_118103940_118111696_118111748_118137999_118138162_118142953_118142996_118149583_118149647_118153228_118153310_118156451_118156556_118157932_118158038_118163304_118163659_118172054_118172121_118173809_118173837_118174138_118174188_118175768_118175877_118178898_118179016_118179818_118179960_118180561_118180610_118181638_118181786_118182377_118182484_118183625_118183697_118186067
ENSMUST00000166804.2	chr10	-	1566	6	FSM	ENSMUSG00000052151.13	ENSMUST00000166804.2	1566	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCCATGCATGTTGATTT	NA	NA	NA	NA	NA	NA	NA	NA	79369594	79362268	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366816_79369457
ENSMUST00000166852.3	chr17	-	520	1	FSM	ENSMUSG00000091742.3	ENSMUST00000166852.3	520	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACTTTTTCCAAAAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	46751023	46750503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_46750500_46751000
ENSMUST00000166930.8	chrX	-	1926	4	FSM	ENSMUSG00000031422.17	ENSMUST00000166930.8	1926	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	135641904	135633701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641694
ENSMUST00000166950.8	chr11	-	754	4	FSM	ENSMUSG00000078974.11	ENSMUST00000166950.8	754	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTATCAAATTTTAGTAA	NA	NA	NA	NA	NA	NA	NA	NA	16458484	16451637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458103
ENSMUST00000166976.3	chr8	-	2734	2	FSM	ENSMUSG00000055707.14	ENSMUST00000166976.3	2734	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGGTGTCCCTTGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	70929618	70903054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_70905670_70929499
ENSMUST00000166996.2	chr5	-	552	5	NNC	ENSMUSG00000029273.11	novel	865	7	NA	NA	5975	-2	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGAGAGTTGGTTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	87708050	87703798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_87703909_87704712_87704894_87706346_87706442_87707619_87707747_87708011
ENSMUST00000167111.6	chr3	-	1418	8	FSM	ENSMUSG00000038975.15	ENSMUST00000167111.6	1418	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	153617782	153612925	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561
ENSMUST00000167118.2	chr7	+	861	5	FSM	ENSMUSG00000030598.16	ENSMUST00000167118.2	861	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGACCAGTCTGATTGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	28431924	28436907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763
ENSMUST00000167160.8	chr4	-	1572	6	FSM	ENSMUSG00000029001.16	ENSMUST00000167160.8	1572	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGCCCTGCGGCTTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	148244052	148237256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_148238102_148240602_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148243971
ENSMUST00000167180.8	chr17	+	1324	6	FSM	ENSMUSG00000040771.15	ENSMUST00000167180.8	1324	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	NA	NA	NA	NA	NA	NA	NA	48717041	48724282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_48717401_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUST00000167182.8	chr6	+	2271	4	FSM	ENSMUSG00000042079.14	ENSMUST00000167182.8	2271	4	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCACAGCTTATGTACT	NA	NA	NA	NA	NA	NA	NA	NA	117877300	117902582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_117877468_117894430_117894560_117896059_117896121_117900668
ENSMUST00000167187.8	chr18	+	1222	11	FSM	ENSMUSG00000024576.15	ENSMUST00000167187.8	1222	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTGTGGACAACCATTTAC	NA	NA	NA	NA	NA	NA	NA	NA	61688759	61720602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
ENSMUST00000167187.8-0	chr18	+	2426	11	FSM	ENSMUSG00000024576.15	ENSMUST00000167187.8	1222	11	-376	-828	0	55	multi-exon	TRUE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGTGTGTGTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	61688383	61721430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
ENSMUST00000167196.2	chr11	-	738	6	NNC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	4091	-12	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTGTTCATGTTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	82795115	82791605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82793960_82794915_82794963_82795065
ENSMUST00000167197.8	chr7	-	1944	10	FSM	ENSMUSG00000060601.14	ENSMUST00000167197.8	1944	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAACAAAAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	44203347	44199075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202182_44203002_44203133_44203228
ENSMUST00000167199.3	chr19	+	581	4	FSM	ENSMUSG00000024683.7	ENSMUST00000167199.3	1162	4	21	560	21	-560	multi-exon	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGAACCAAGTTGCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	11747775	11751764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_11747889_11748165_11748232_11750238_11750388_11751511
ENSMUST00000167203.2	chr13	-	628	7	NNC	ENSMUSG00000049658.14	novel	1704	10	NA	NA	5262	-916	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	107	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAAACAAAAATCT	NA	NA	NA	NA	NA	NA	NA	NA	100235084	100215241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr13_-_100215306_100220648_100220704_100225860_100225956_100228701_100228836_100229921_100230051_100234045_100234106_100234993
ENSMUST00000167226.2	chr10	-	390	2	FSM	ENSMUSG00000090761.2	ENSMUST00000167226.2	390	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCTAACAGGAGGTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	128231432	128227710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_128227943_128231274
ENSMUST00000167264.8	chr8	+	1566	8	FSM	ENSMUSG00000031585.14	ENSMUST00000167264.8	1566	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTAATGCTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	34222069	34267192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_34222158_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
ENSMUST00000167271.9	chr13	-	595	4	FSM	ENSMUSG00000043190.15	ENSMUST00000167271.9	595	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGTAATTTTGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	76166838	76150885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76166776
ENSMUST00000167299.9	chr7	+	2022	15	FSM	ENSMUSG00000030769.16	ENSMUST00000167299.9	2022	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGGGTGAGCCAGGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	122834842	122872426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_122834978_122837346_122837419_122838591_122838697_122839961_122840022_122847160_122847266_122849293_122849400_122851635_122851717_122857576_122857783_122859729_122859866_122864411_122864520_122864809_122864961_122866971_122867141_122868245_122868462_122869063_122869233_122872223
ENSMUST00000167361.8	chr7	+	860	8	FSM	ENSMUSG00000078765.12	ENSMUST00000167361.8	860	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGTGGTTTCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	30262774	30264786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_30262834_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUST00000167400.8	chr11	+	1793	4	FSM	ENSMUSG00000020346.17	ENSMUST00000167400.8	3151	4	0	1358	0	-1331	multi-exon	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTTTGACCAGCATCTT	NA	NA	NA	NA	NA	NA	NA	NA	49135017	49152491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_49135167_49136019_49136445_49142376_49142502_49151397
ENSMUST00000167405.3	chr7	-	2597	2	FSM	ENSMUSG00000049580.13	ENSMUST00000167405.3	2597	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGCATTTGCTGACAAATC	NA	NA	NA	NA	NA	NA	NA	NA	98010499	97999874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_98002338_98010365
ENSMUST00000167436.3	chr11	+	606	4	FSM	ENSMUSG00000060938.15	ENSMUST00000167436.3	606	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTGTCTTGTGTGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	68792460	68795359	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_68792584_68793095_68793269_68794004_68794146_68795190
ENSMUST00000167493.9	chr7	-	1656	10	FSM	ENSMUSG00000038650.16	ENSMUST00000167493.9	1656	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	NA	NA	NA	NA	NA	NA	NA	NA	140752770	140740240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140752654
ENSMUST00000167504.3	chr9	-	944	4	FSM	ENSMUSG00000091537.3	ENSMUST00000167504.3	944	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1937	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGGGGTTGCCATGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	108911655	108906954	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_108907494_108911069_108911158_108911238_108911295_108911394
ENSMUST00000167525.3	chr8	-	1764	4	FSM	ENSMUSG00000063253.12	ENSMUST00000167525.3	1764	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAAGCTGTTTCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	84169136	84161144	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_84162670_84164181_84164263_84164613_84164686_84169050
ENSMUST00000167542.2	chr18	+	634	4	NIC	ENSMUSG00000024283.16	novel	3070	14	NA	NA	41118	-7636	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATAAGCACACCTCAAAC	NA	NA	NA	NA	NA	NA	NA	NA	7910618	7918503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_+_7910825_7916051_7916298_7917564_7917676_7918432
ENSMUST00000167569.8	chr9	-	726	3	FSM	ENSMUSG00000004771.13	ENSMUST00000167569.8	726	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTTAGAAATAAGCTATTG	NA	NA	NA	NA	NA	NA	NA	NA	64645024	64623784	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_64624271_64632783_64632865_64644865
ENSMUST00000167624.2	chr17	-	895	7	FSM	ENSMUSG00000024026.14	ENSMUST00000167624.2	895	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGGTCTGGGCAGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	30831633	30811839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_30812049_30813088_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
ENSMUST00000167626.8	chr17	-	2506	6	FSM	ENSMUSG00000025730.15	ENSMUST00000167626.8	2506	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTGTCTGGCTTCATCT	NA	NA	NA	NA	NA	NA	NA	NA	26138626	26101087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26138338
ENSMUST00000167643.4	chr15	-	1145	3	FSM	ENSMUSG00000091780.4	ENSMUST00000167643.4	1145	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCATGTGCTCTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	89258021	89255839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_89256669_89257625_89257806_89257885
ENSMUST00000167662.8	chr17	+	1720	10	FSM	ENSMUSG00000001576.16	ENSMUST00000167662.8	2754	10	56	978	56	601	multi-exon	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACAGTTACATTCTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	26780518	26874927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26874040
ENSMUST00000167692.8	chr17	-	2092	14	FSM	ENSMUSG00000023942.16	ENSMUST00000167692.8	2092	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	45904566	45896127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45904481
ENSMUST00000167721.8	chr5	-	1242	5	FSM	ENSMUSG00000029580.15	ENSMUST00000167721.8	1242	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTGTCTTTTTTTAATA	NA	NA	NA	NA	NA	NA	NA	NA	142892457	142889255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142891318_142891448_142892406
ENSMUST00000167731.8	chr15	+	1821	3	FSM	ENSMUSG00000022346.18	ENSMUST00000167731.8	1821	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCCTCAAACTTAAATAGT	NA	NA	NA	NA	NA	NA	NA	NA	61857470	61861916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_61857801_61859358_61860128_61861194
ENSMUST00000167797.8	chr11	+	2453	13	FSM	ENSMUSG00000020359.14	ENSMUST00000167797.8	3116	13	0	663	0	-663	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATAGAAACCTATTAATTA	NA	NA	NA	NA	NA	NA	NA	NA	51475583	51494653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_51475707_51476340_51476460_51477387_51477548_51482225_51482301_51482832_51482921_51482995_51483113_51484430_51484514_51484742_51484969_51489102_51489258_51489477_51489568_51490292_51490424_51491395_51491450_51493621
ENSMUST00000167827.2	chr19	+	769	6	ISM	ENSMUSG00000024909.16	ENST00000307998.11	1467	11	611	1643	381	-1643	internal_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGAGCCAGGCCGATTCTC	NA	NA	NA	NA	NA	NA	NA	NA	5525332	5530107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057
ENSMUST00000167866.2	chr9	+	2403	11	FSM	ENSMUSG00000032279.12	ENSMUST00000167866.2	2403	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGGCGTTTGCATTCTC	NA	NA	NA	NA	NA	NA	NA	NA	54493794	54511945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUST00000167866.2-0	chr9	+	1705	11	FSM	ENSMUSG00000032279.12	ENSMUST00000217484.2	2580	11	0	875	0	-100	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCGCACAAGATAACATTAT	NA	NA	NA	NA	NA	NA	NA	NA	54493617	54511070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUST00000167872.8	chr10	+	389	4	ISM	ENSMUSG00000020111.16	ENSMUST00000092508.12	2294	13	30	123442	30	-123442	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGAGCCTACTCCACACCA	NA	NA	NA	NA	NA	NA	NA	NA	59538479	59576503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481
ENSMUST00000167875.9	chr2	-	1194	6	FSM	ENSMUSG00000005233.17	ENSMUST00000167875.9	1194	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTTGTAACTCTCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	69036534	69024239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69036407
ENSMUST00000167877.2	chr3	-	1089	8	FSM	ENSMUSG00000028007.14	ENST00000529992.5	1611	8	112	410	112	-126	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGTGGAAGACTCCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	117662470	117575947	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_117576026_117594489_117594643_117623225_117623313_117626488_117626689_117630786_117630986_117633576_117633688_117640162_117640346_117662392
ENSMUST00000167885.8	chr9	+	540	4	FSM	ENSMUSG00000007656.14	ENSMUST00000167885.8	540	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTCCTCTACTGTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	74945100	74964104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_74945244_74950494_74950581_74959514_74959638_74963916
ENSMUST00000167965.8	chr7	+	1746	11	FSM	ENSMUSG00000030782.18	ENSMUST00000167965.8	1746	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTACAGTGCCAGAGAACC	NA	NA	NA	NA	NA	NA	NA	NA	127846149	127852879	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_127846181_127847348_127847465_127847591_127847645_127847749_127847893_127848058_127848147_127848261_127848368_127848471_127848667_127851248_127851423_127851649_127851732_127851955_127852105_127852270
ENSMUST00000167998.2	chr3	+	1938	12	FSM	ENSMUSG00000028048.12	ENSMUST00000167998.2	1938	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGTGCTATCTGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	89110246	89115988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89110394_89110498_89110668_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
ENSMUST00000168005.8	chr7	-	3004	19	FSM	ENSMUSG00000031024.14	ENSMUST00000168005.8	3004	19	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATTGTGTTCCTTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	109216354	109123117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109169213_109169319_109216264
ENSMUST00000168015.8	chr3	-	3460	21	FSM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	104725621	104702151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725473_104725573
ENSMUST00000168037.2	chr13	+	125	2	ISM	ENSMUSG00000021697.13	ENSMUST00000171178.2	1404	10	-42	64762	-42	-64762	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTTACGGAGACATCGTT	NA	NA	NA	NA	NA	NA	NA	NA	108452913	108460474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_108453004_108460439
ENSMUST00000168062.8	chr3	+	1474	13	FSM	ENSMUSG00000001416.14	ENSMUST00000168062.8	1943	13	0	469	0	-469	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTGGGGTGTGAATGGT	NA	NA	NA	NA	NA	NA	NA	NA	88204494	88228345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320
ENSMUST00000168064.3	chr16	+	1277	4	FSM	ENSMUSG00000091243.3	ENSMUST00000168064.3	7009	4	372	5360	0	-271	multi-exon	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTTTTGAACCAGTA	NA	NA	NA	NA	NA	NA	NA	NA	65612514	65657894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_65612645_65624779_65625063_65636094_65636620_65657555
ENSMUST00000168076.2	chr10	-	643	2	FSM	ENSMUSG00000046822.15	ENSMUST00000168076.2	3461	2	0	2818	0	-2818	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTCGAGGGCCTGGCGCT	NA	NA	NA	NA	NA	NA	NA	NA	80869746	80867192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_80867535_80869445
ENSMUST00000168120.3	chr12	+	1348	3	FSM	ENSMUSG00000072949.7	ENSMUST00000168120.3	2272	3	0	924	0	-924	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCATCTGAACATAAAACT	NA	NA	NA	NA	NA	NA	NA	NA	84056263	84064221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_84056741_84061152_84061356_84063553
ENSMUST00000168166.8	chr9	+	3944	4	FSM	ENSMUSG00000007656.14	ENSMUST00000168166.8	3944	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTTATTGATTTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	74944895	74967576	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_74945002_74945188_74945244_74959514_74959638_74963916
ENSMUST00000168194.3	chr7	+	775	6	FSM	ENSMUSG00000025470.12	ENSMUST00000168194.3	1076	6	116	185	116	-185	multi-exon	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTCCTTATTTCCATCT	NA	NA	NA	NA	NA	NA	NA	NA	139616440	139620330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238_139619359_139620155
ENSMUST00000168195.8	chr16	-	4019	6	FSM	ENSMUSG00000022952.18	ENSMUST00000168195.8	1985	6	405	-2439	405	697	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAACACAGAAAGTCCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	92492608	92399846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_92403013_92410486_92410649_92441041_92441234_92465595_92465701_92485863_92486021_92492371
ENSMUST00000168292.2	chr2	-	1484	13	FSM	ENSMUSG00000090625.2	ENSMUST00000168292.2	1484	13	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTTGCCGAGGCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	174188505	174172111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_174172228_174176004_174176080_174176083_174176091_174178550_174178581_174183441_174183501_174183602_174183721_174184990_174185091_174186867_174186920_174187017_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ENSMUST00000168338.2	chr12	+	1633	4	FSM	ENSMUSG00000060950.13	ENSMUST00000168338.2	2131	4	11	487	11	-487	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCACAGGCCACGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	111644549	111649849	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_111644735_111645036_111645397_111647235_111647503_111649028
ENSMUST00000168345.6	chr3	+	1295	7	FSM	ENSMUSG00000091512.6	ENSMUST00000168345.6	1295	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	782	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTCTGTATAGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	137624286	137634526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_137624425_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137633707
ENSMUST00000168352.2	chr3	-	2151	3	FSM	ENSMUSG00000028184.13	ENSMUST00000168352.2	2151	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACGTGCACTTTTATGT	NA	NA	NA	NA	NA	NA	NA	NA	148528615	148521491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_148523565_148526608_148526662_148528590
ENSMUST00000168382.2	chr18	+	1750	4	FSM	ENSMUSG00000057561.11	ENSMUST00000168382.2	1750	4	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAACTTTTTCTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	46730774	46742238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_46730868_46731707_46731768_46740570_46741344_46741414
ENSMUST00000168423.9	chr18	+	3723	11	FSM	ENSMUSG00000024563.17	ENSMUST00000168423.9	8089	11	0	4366	0	23	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGCATCCAAAGGCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	76374650	76439668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_76375051_76395510_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
ENSMUST00000168460.8	chr5	+	1107	8	FSM	ENSMUSG00000029130.13	ENSMUST00000168460.8	1107	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATGTCCAGGAAGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	29403003	29430289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_29403019_29403571_29403837_29408052_29408196_29410666_29410700_29411171_29411297_29411693_29411803_29429114_29429283_29430040
ENSMUST00000168463.8	chr12	-	431	4	FSM	ENSMUSG00000091803.8	ENSMUST00000168463.8	431	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTATGCTTTTCAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	81531887	81518866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_81518946_81521360_81521424_81527704_81527777_81531670
ENSMUST00000168503.8	chr4	-	1240	6	FSM	ENSMUSG00000055401.15	ENSMUST00000168503.8	1240	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTTCATCCTGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	148236592	148230172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236469
ENSMUST00000168520.3	chr10	-	1043	6	FSM	ENSMUSG00000025436.13	ENSMUST00000168520.3	1043	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTATTTTTTGGCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	126737217	126723117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_126723564_126727508_126727593_126730093_126730232_126734755_126734838_126735449_126735496_126736970
ENSMUST00000168578.3	chr7	-	1375	2	FSM	ENSMUSG00000030431.9	ENSMUST00000168578.3	1375	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCACCTCCAGTTCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	4792655	4787555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_4788279_4792003
ENSMUST00000168644.3	chr3	-	1235	6	NNC	ENSMUSG00000001052.16	novel	5128	24	NA	NA	19585	-23519	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGTACTCTTTACTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	129834788	129801059	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_-_129801245_129803310_129803544_129805440_129805522_129824180_129824307_129827479_129827624_129834322
ENSMUST00000168665.3	chr9	-	595	2	FSM	ENSMUSG00000032403.9	ENSMUST00000168665.3	595	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGTTTCTAGAGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	63306523	63301728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_63301958_63306157
ENSMUST00000168689.2	chr11	+	1124	7	ISM	ENSMUSG00000033857.13	ENST00000579016.6	2060	13	5597	-21	5597	21	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCTCCAGAGCACAGCGTC	NA	NA	NA	NA	NA	NA	NA	NA	118375315	118378335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_118375348_118375665_118375775_118375949_118376141_118376582_118376732_118377270_118377380_118377647_118377763_118377916
ENSMUST00000168697.4	chr10	-	495	1	FSM	ENSMUSG00000069682.7	ENSMUST00000168697.4	495	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAGAAGCAACAAGAAAATA	NA	NA	NA	NA	NA	NA	NA	NA	29575286	29574791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_29574800_29575300
ENSMUST00000168846.3	chr15	-	1652	12	FSM	ENSMUSG00000067713.8	ENSMUST00000168846.3	1652	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTTGATTTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	98729402	98710677	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98729310
ENSMUST00000168847.8	chr8	+	2803	9	FSM	ENSMUSG00000007610.16	ENSMUST00000168847.8	2803	9	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCCTTTCCCTCGAACT	NA	NA	NA	NA	NA	NA	NA	NA	71940746	71946044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71941485_71941714_71941963_71942068_71942159_71942978_71943182_71943538_71943612_71943709_71943854_71944068_71944235_71944720_71945000_71945182
ENSMUST00000168864.4	chr9	-	2076	2	FSM	ENSMUSG00000037206.16	ENSMUST00000168864.4	2076	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACAGCATTTCTGATGC	NA	NA	NA	NA	NA	NA	NA	NA	58065828	58063556	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_58065514_58065709
ENSMUST00000168877.2	chr17	-	510	1	FSM	ENSMUSG00000091614.3	ENSMUST00000168877.2	510	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCCCCGGTCGGGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	29738764	29738254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_29738300_29738800
ENSMUST00000168916.8	chr2	+	1859	11	FSM	ENSMUSG00000027257.14	ENSMUST00000168916.8	1859	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCGTCTTTTGATAGCC	NA	NA	NA	NA	NA	NA	NA	NA	91087157	91095024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_91087272_91090212_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
ENSMUST00000169008.8	chr9	+	562	6	ISM	ENSMUSG00000032301.14	ENSMUST00000034848.14	1165	9	15	2998	15	-2781	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTGTTCTGCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	54858088	54862316	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164
ENSMUST00000169025.4	chr3	+	733	1	FSM	ENSMUSG00000091421.4	ENSMUST00000169025.4	733	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	239	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAACCGGCCTTCCAACCT	NA	NA	NA	NA	NA	NA	NA	NA	92596732	92597465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_92596700_92597500
ENSMUST00000169068.8	chr9	-	1364	6	FSM	ENSMUSG00000040813.17	ENSMUST00000169068.8	1364	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTGGTTTTTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	106562881	106535944	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562833
ENSMUST00000169082.3	chr15	+	1797	4	FSM	ENSMUSG00000044217.18	ENSMUST00000169082.3	1797	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCATCTCCCTCCAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	99488662	99492710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_99489516_99490542_99490708_99491126_99491211_99492015
ENSMUST00000169094.8	chr5	-	2716	12	FSM	ENSMUSG00000029405.17	ENSMUST00000169094.8	2716	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGTTCTTCAGTTAAC	NA	NA	NA	NA	NA	NA	NA	NA	92231372	92201575	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
ENSMUST00000169139.2	chr10	+	641	3	ISM	ENSMUSG00000020101.15	ENSMUST00000020301.14	4846	7	133	13646	133	-10255	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTCCCTGTCTTTTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	60182762	60194817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_60182883_60193620_60194047_60194722
ENSMUST00000169169.8	chr14	+	721	6	FSM	ENSMUSG00000091898.9	ENSMUST00000169169.8	721	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTCCTGGGGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	30930268	30933686	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_30930336_30931759_30931791_30932016_30932164_30932520_30932636_30933236_30933374_30933462
ENSMUST00000169182.3	chr9	-	1355	1	FSM	ENSMUSG00000091639.3	ENSMUST00000169182.3	1355	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCATTCCTTGAGCCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	31848096	31846741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_31846700_31848100
ENSMUST00000169186.3	chr16	+	1320	2	FSM	ENSMUSG00000035790.16	ENSMUST00000169186.3	1320	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGATAAGTCTTACTGGC	NA	NA	NA	NA	NA	NA	NA	NA	31922695	31926873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_31922866_31925723
ENSMUST00000169232.2	chr2	+	3499	5	FSM	ENSMUSG00000050447.16	ENSMUST00000169232.2	3499	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCGGCTTCTTCCTGCGAG	NA	NA	NA	NA	NA	NA	NA	NA	50018380	50083575	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_50018547_50055480_50055670_50063612_50063712_50078722_50078854_50080661
ENSMUST00000169259.4	chr10	+	874	1	FSM	ENSMUSG00000112408.2	ENSMUST00000169259.4	874	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTGAGCAAAGCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	100166401	100167275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_100166400_100167300
ENSMUST00000169286.2	chr3	-	874	1	FSM	ENSMUSG00000027848.13	ENSMUST00000169286.2	874	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	103639869	103638995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_103639000_103639900
ENSMUST00000169308.8	chr17	+	1026	5	FSM	ENSMUSG00000025731.17	ENSMUST00000169308.8	1026	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGGGAATACCTGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	26094474	26096143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634
ENSMUST00000169314.9	chr13	+	631	5	FSM	ENSMUSG00000058258.15	ENSMUST00000169314.9	3027	5	305	2091	305	-2091	multi-exon	TRUE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCAATCTGATGGTATC	NA	NA	NA	NA	NA	NA	NA	NA	8935841	8940396	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938090_8940353
ENSMUST00000169343.8	chr15	+	1216	5	FSM	ENSMUSG00000022587.15	ENSMUST00000169343.8	2154	5	135	803	0	-229	multi-exon	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACCTGAAAAGATTCTACA	NA	NA	NA	NA	NA	NA	NA	NA	74827034	74830951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_74827185_74827331_74827567_74829625_74829727_74830117_74830238_74830341
ENSMUST00000169343.8-1	chr15	+	1223	5	FSM	ENSMUSG00000022587.15	ENSMUST00000169343.8	2154	5	55	876	0	203	multi-exon	FALSE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGATGTATATCTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	74826954	74830878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_74827185_74827331_74827567_74829625_74829727_74830117_74830238_74830341
ENSMUST00000169357.2	chr7	-	1691	1	FSM	ENSMUSG00000092118.2	ENSMUST00000169357.2	1691	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTCTTTGTACAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	51512015	51510324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_51510300_51512000
ENSMUST00000169365.2	chr3	+	810	7	FSM	ENSMUSG00000004032.11	ENSMUST00000169365.2	810	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTAACTGGTGTCTAGA	NA	NA	NA	NA	NA	NA	NA	NA	107803562	107805994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_107803690_107803941_107804007_107804603_107804686_107804777_107804879_107805282_107805379_107805481_107805593_107805766
ENSMUST00000169437.9	chr7	-	2274	5	FSM	ENSMUSG00000070436.13	ENSMUST00000169437.9	2274	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAAGCCTGTGATTTATG	NA	NA	NA	NA	NA	NA	NA	NA	99002321	98994582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002088
ENSMUST00000169492.8	chr9	+	3963	4	FSM	ENSMUSG00000007656.14	ENSMUST00000169492.8	3963	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGTTTTGTCTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	74944895	74967595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_74945002_74945188_74945244_74959514_74959638_74963916
ENSMUST00000169498.3	chr18	+	832	5	NIC	ENSMUSG00000044024.17	novel	1995	6	NA	NA	80	-225	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGCCCAGGGCTGTCTAG	NA	NA	NA	NA	NA	NA	NA	NA	38088756	38091373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_+_38088963_38089981_38090048_38090141_38090209_38090641_38090828_38091066
ENSMUST00000169591.8	chr17	+	2242	13	FSM	ENSMUSG00000048440.17	ENSMUST00000169591.8	2242	13	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATGTCTTGGTTCCATT	NA	NA	NA	NA	NA	NA	NA	NA	32755531	32770772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_32755630_32755968_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
ENSMUST00000169604.8	chr15	-	1249	7	FSM	ENSMUSG00000033029.13	ENSMUST00000169604.8	1249	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGACATGTGCCACCTTG	NA	NA	NA	NA	NA	NA	NA	NA	79025453	79018860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_79019423_79019552_79019654_79019836_79019966_79020506_79020690_79023437_79023501_79025080_79025193_79025354
ENSMUST00000169609.2	chr9	-	1677	6	FSM	ENSMUSG00000032018.15	ENSMUST00000169609.2	1677	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGCTCTTCCATAATTC	NA	NA	NA	NA	NA	NA	NA	NA	42175496	42166028	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175417
ENSMUST00000169612.3	chr7	-	1605	1	FSM	ENSMUSG00000091811.3	ENSMUST00000169612.3	1605	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACAGCGTTGGTTTCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	16007542	16005937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_16005900_16007500
ENSMUST00000169613.4	chr19	-	821	7	FSM	ENSMUSG00000060803.7	ENSMUST00000169613.4	821	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	4087985	4085406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087862
ENSMUST00000169625.2	chr6	-	652	2	ISM	ENSMUSG00000025701.13	ENSMUST00000170186.2	1929	14	48404	-311	48404	311	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACAACTGTTCTGGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	116389581	116387368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_116387860_116389420
ENSMUST00000169630.8	chr2	+	994	6	FSM	ENSMUSG00000027569.16	ENSMUST00000169630.8	1192	6	0	198	0	-198	multi-exon	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCAACAGCAATCCCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	180223096	180227229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_180223331_180224403_180224749_180225193_180225316_180226198_180226281_180226589_180226665_180227093
ENSMUST00000169666.3	chr12	+	1346	1	FSM	ENSMUSG00000091269.3	ENSMUST00000169666.3	1346	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGTGCTGCCATTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	4832169	4833515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_4832200_4833500
ENSMUST00000169678.4	chr15	+	883	1	FSM	ENSMUSG00000090544.4	ENSMUST00000169678.4	883	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGTTTTTATACGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	27025413	27026296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_27025400_27026300
ENSMUST00000169681.3	chr15	+	2292	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	91	1471	0	-1471	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAATTCTTATCCTGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	101982298	102004137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUST00000169681.3-1	chr15	+	2311	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	0	1543	0	-1543	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGTGACAGAGAGGCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	101982207	102004065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUST00000169722.8	chr14	+	1101	8	NNC	ENSMUSG00000056234.16	novel	4065	10	NA	NA	73	-3006	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTCAGAGAGCCCTACAA	NA	NA	NA	NA	NA	NA	NA	NA	31881894	31898198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr14_+_31881968_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896349_31896491_31897895
ENSMUST00000169744.8	chr6	-	3489	8	FSM	ENSMUSG00000030168.14	ENSMUST00000169744.8	3489	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATCAGCAGCCAGACGC	NA	NA	NA	NA	NA	NA	NA	NA	119365647	119330725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_119332890_119334176_119334371_119335882_119336071_119336311_119336499_119338788_119338961_119342221_119342342_119347110_119347370_119365442
ENSMUST00000169850.8	chr19	-	3224	10	FSM	ENSMUSG00000025089.16	ENSMUST00000169850.8	3224	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGACTCCTCTGGTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	58442898	58225123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_58226979_58227685_58227740_58252343_58252526_58255430_58255566_58258485_58258596_58288673_58289011_58381004_58381020_58440400_58440485_58441595_58441890_58442740
ENSMUST00000169948.2	chr5	-	600	8	FSM	ENSMUSG00000029397.16	ENSMUST00000169948.2	1417	8	9	808	4	-73	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGTAAGCTTTGTGACT	NA	NA	NA	NA	NA	NA	NA	NA	92110585	92097667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_92097724_92099679_92099801_92100799_92100827_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92110488
ENSMUST00000169990.8	chr4	+	1344	8	NIC	ENSMUSG00000028542.18	novel	2320	14	NA	NA	0	-4258	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	179	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTGCTACCGGTGAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	117706395	117721201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_+_117706664_117712319_117712476_117713071_117713229_117713886_117714019_117714399_117714671_117720625_117720759_117720885_117721021_117721109
ENSMUST00000169997.6	chr5	-	2251	9	FSM	ENSMUSG00000067220.13	ENSMUST00000169997.6	2251	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCTGGTCAACAGCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	72795189	72761457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_72762873_72766797_72766905_72768151_72768260_72769503_72769615_72769703_72769746_72774064_72774128_72775510_72775613_72776354_72776476_72795007
ENSMUST00000170000.4	chr9	-	1111	5	FSM	ENSMUSG00000042396.11	ENSMUST00000170000.4	1773	5	3	659	0	-659	multi-exon	FALSE	canonical	NA	NA	NA	NA	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAAACGGATAGGTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	48406594	48400659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48406454
ENSMUST00000170017.8	chr11	-	1195	9	NNC	ENSMUSG00000017286.16	novel	1434	9	NA	NA	12	-97	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	466	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCCTTTAATCCCAGCACT	NA	NA	NA	NA	NA	NA	NA	NA	76134477	76112432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130331_76131698_76131749_76134380
ENSMUST00000170068.9	chr7	+	1233	13	FSM	ENSMUSG00000015149.15	ENSMUST00000170068.9	1585	13	-49	401	0	185	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACCACCATAGCCTCTAA	NA	NA	NA	NA	NA	NA	NA	NA	28466191	28487685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_28466293_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
ENSMUST00000170100.2	chr15	+	1073	5	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	540	-15	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATCCGACTTACTGTA	NA	NA	NA	NA	NA	NA	NA	NA	10486694	10493760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_10486803_10488075_10488185_10490341_10490601_10492873_10492950_10493239
ENSMUST00000170116.8	chr11	-	1797	5	FSM	ENSMUSG00000049680.18	ENSMUST00000170116.8	5528	5	223	3508	218	-1240	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGGGTCCCGGAGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	5712153	5666924	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_5668264_5672801_5672841_5673110_5673162_5676347_5676411_5711848
ENSMUST00000170122.4	chr3	-	345	4	FSM	ENSMUSG00000090733.7	ENSMUST00000170122.4	345	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	90120958	90119977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120916
ENSMUST00000170141.3	chr8	+	1466	6	FSM	ENSMUSG00000031697.13	ENSMUST00000170141.3	1466	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGAGTTGTGATTGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	86026317	86034907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_86026622_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUST00000170142.8	chr6	-	2133	10	FSM	ENSMUSG00000029821.16	ENSMUST00000170142.8	2133	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTAGTTGGCTGTTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	50238749	50184382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_50185187_50193329_50193404_50196216_50196419_50197968_50198097_50199715_50199881_50204258_50204380_50206265_50206438_50222909_50223103_50228255_50228494_50238713
ENSMUST00000170190.8	chr2	-	2483	7	FSM	ENSMUSG00000038671.16	ENSMUST00000170190.8	2483	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAACTATAAGGCTACAGG	NA	NA	NA	NA	NA	NA	NA	NA	181007197	180999482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181007011
ENSMUST00000170202.9	chr11	-	1078	8	FSM	ENSMUSG00000020444.20	ENSMUST00000170202.9	1078	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	686	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	59082778	59074700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082576
ENSMUST00000170213.2	chr3	+	637	4	NNC	ENSMUSG00000015749.13	novel	2890	6	NA	NA	-41	-5	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACATTGTTGCTTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	95836852	95852859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_+_95836963_95845247_95845352_95851618_95851674_95852491
ENSMUST00000170217.8	chr1	-	2036	18	FSM	ENSMUSG00000026245.17	ENSMUST00000170217.8	2036	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATGGCTCTGCTACTAT	NA	NA	NA	NA	NA	NA	NA	NA	78465496	78394611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_78394860_78401829_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
ENSMUST00000170241.8	chr4	+	1079	5	FSM	ENSMUSG00000028478.19	ENSMUST00000170241.8	1079	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACATGAAGCATCTTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	44012642	44032845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44032400
ENSMUST00000170263.9	chr8	+	2096	6	FSM	ENSMUSG00000031562.16	ENSMUST00000170263.9	2096	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	NA	NA	NA	NA	NA	NA	NA	48562992	48594700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
ENSMUST00000170268.2	chr14	+	584	6	NNC	ENSMUSG00000091898.9	novel	721	6	NA	NA	18	-93	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGAACCTTGGCCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	30930286	30933593	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr14_+_30930336_30931759_30931791_30932016_30932164_30932520_30932636_30933262_30933374_30933462
ENSMUST00000170308.8	chr9	+	429	4	FSM	ENSMUSG00000007656.14	ENSMUST00000170308.8	429	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATTTCTCTGACTACG	NA	NA	NA	NA	NA	NA	NA	NA	74944958	74964120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_74945006_74945188_74945244_74959514_74959638_74963916
ENSMUST00000170331.8	chr14	-	777	4	FSM	ENSMUSG00000013701.14	ENSMUST00000170331.8	777	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTCCAAATTCAGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	31923826	31902247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_31902628_31911100_31911212_31920925_31920985_31923599
ENSMUST00000170335.4	chr18	-	965	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3663	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGACCTGCAGAGATGG	NA	NA	NA	NA	NA	NA	NA	NA	61393043	61392078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_61392100_61393000
ENSMUST00000170416.8	chr8	-	3067	18	FSM	ENSMUSG00000038291.17	ENSMUST00000170416.8	3067	18	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCTCAAAGGTATTATATG	NA	NA	NA	NA	NA	NA	NA	NA	46577183	46486297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_46486860_46487438_46487540_46488574_46488757_46491491_46491559_46494353_46494472_46497004_46497170_46498222_46498337_46500327_46500469_46502402_46502535_46507355_46507518_46508884_46509161_46511503_46511636_46521092_46521275_46533258_46533330_46556551_46556739_46558155_46558329_46569218_46569436_46577098
ENSMUST00000170468.8	chr5	-	1510	6	FSM	ENSMUSG00000029507.17	ENSMUST00000170468.8	1510	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGCCTATTTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	110928481	110921533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928427
ENSMUST00000170538.8	chr13	-	828	7	NNC	ENSMUSG00000021417.16	novel	1426	10	NA	NA	-32813	-8310	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTCTCCTTCCACAGAC	NA	NA	NA	NA	NA	NA	NA	NA	35211077	35170049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr13_-_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35210991
ENSMUST00000170578.3	chr17	-	2314	3	FSM	ENSMUSG00000048027.10	ENSMUST00000170578.3	5698	3	326	3058	171	-1580	multi-exon	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTGCTTGGAGTCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	16046522	16026507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_16028064_16040931_16041441_16046273
ENSMUST00000170669.4	chr3	+	429	1	FSM	ENSMUSG00000092072.4	ENSMUST00000170669.4	429	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATTATTTATTCAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	105941979	105942408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_105942000_105942400
ENSMUST00000170703.4	chr10	+	1060	1	FSM	ENSMUSG00000090610.4	ENSMUST00000170703.4	1060	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCGGAATTGGAGAGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	93614521	93615581	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_93614500_93615600
ENSMUST00000170716.8	chr11	+	1461	11	FSM	ENSMUSG00000060600.16	ENSMUST00000170716.8	1461	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCATGCTGTGTTCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	70548621	70553336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ENSMUST00000170759.3	chr17	+	2186	10	FSM	ENSMUSG00000050668.11	ENSMUST00000170759.3	4134	10	5	1943	5	-1943	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAGTGGCACTACACTAC	NA	NA	NA	NA	NA	NA	NA	NA	79143022	79153794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_79143108_79144222_79144350_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572
ENSMUST00000170771.3	chr10	+	2107	8	FSM	ENSMUSG00000019779.16	ENSMUST00000170771.3	3406	8	12	1287	12	-1287	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGACATATTCAAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	34359527	34484662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_34360366_34423288_34423411_34459893_34460058_34462161_34462331_34467807_34467967_34481690_34481873_34483801_34483968_34484355
ENSMUST00000170801.8	chr19	-	3172	11	FSM	ENSMUSG00000025198.17	ENSMUST00000170801.8	3172	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGTGTTCTATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	44057965	44023382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710
ENSMUST00000170801.8-0	chr19	-	1528	11	FSM	ENSMUSG00000025198.17	ENSMUST00000170801.8	3172	11	131	1513	131	-1513	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGGCATTCCTCCATGTG	NA	NA	NA	NA	NA	NA	NA	NA	44057834	44024895	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710
ENSMUST00000170806.2	chr11	+	1118	2	FSM	ENSMUSG00000050538.9	ENSMUST00000170806.2	1118	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAAGAATGAATGA	NA	NA	NA	NA	NA	NA	NA	NA	97732144	97733869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_97732403_97733009
ENSMUST00000170828.2	chrX	+	452	5	NNC	ENSMUSG00000079435.10	novel	483	5	NA	NA	36	6	at_least_one_novel_splicesite	FALSE	non_canonical	NA	NA	NA	NA	1500	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTCTCCTGTTGAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	133486438	133488811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chrX_+_133486469_133486826_133486933_133487260_133487328_133488199_133488323_133488685
ENSMUST00000170836.4	chr13	+	1893	8	FSM	ENSMUSG00000015671.12	ENSMUST00000170836.4	2911	8	0	1018	0	-1018	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCCCACATTTGTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	14787824	14801203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ENSMUST00000170837.3	chr7	+	485	1	FSM	ENSMUSG00000091955.3	ENSMUST00000170837.3	485	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19697	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATGATTAAACTCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	24561637	24562122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_24561600_24562100
ENSMUST00000170858.8	chr17	+	967	7	ISM	ENSMUSG00000023827.9	ENST00000366911.9	1529	8	82	571	82	-566	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGGAAAGTCACCTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	12370658	12437966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_12370837_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
ENSMUST00000170882.8	chr7	+	1050	5	FSM	ENSMUSG00000042675.16	ENSMUST00000170882.8	1050	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCCCTGGCTCACATGG	NA	NA	NA	NA	NA	NA	NA	NA	126376146	126379683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126376376_126376942_126377126_126377225_126377270_126377477_126377587_126379198
ENSMUST00000170908.8	chr2	+	1342	5	FSM	ENSMUSG00000023330.13	ENSMUST00000170908.8	1342	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTCGCCCTTACCTTTCG	NA	NA	NA	NA	NA	NA	NA	NA	125994060	126007196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_125994135_125996465_125996781_126000329_126000474_126001689_126001949_126006646
ENSMUST00000170947.3	chr9	-	973	6	FSM	ENSMUSG00000032057.10	ENSMUST00000170947.3	973	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATATGACCCCTGATTTGG	NA	NA	NA	NA	NA	NA	NA	NA	51013378	50992414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_50992831_50994878_50994932_50997413_50997474_51011299_51011371_51012353_51012393_51013044
ENSMUST00000170957.3	chr13	-	1209	4	FSM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	216	2819	146	756	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCACCATCAGAAGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	14237857	14228062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14237790
ENSMUST00000171032.8	chr11	+	1429	5	FSM	ENSMUSG00000040938.17	ENSMUST00000171032.8	1754	5	212	113	3	-113	multi-exon	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTTCCACAAGTCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	70104947	70107125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_70105091_70105327_70105539_70105780_70105925_70106109_70106878_70106962
ENSMUST00000171041.8	chr11	-	1466	7	FSM	ENSMUSG00000018442.14	ENSMUST00000171041.8	1466	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTGTATTTAAGCTTTCG	NA	NA	NA	NA	NA	NA	NA	NA	70910667	70900758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905470_70906552_70906627_70909137_70909204_70910216
ENSMUST00000171066.2	chr7	-	1780	1	FSM	ENSMUSG00000010751.16	ENSMUST00000171066.2	1780	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCTGGCTTGAATTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	143190322	143188542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_143188500_143190300
ENSMUST00000171080.8	chr11	-	2844	2	FSM	ENSMUSG00000035455.13	ENSMUST00000171080.8	2844	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTTTGTAGTCTGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	11758962	11750287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_11753064_11758894
ENSMUST00000171120.3	chr10	+	871	1	FSM	ENSMUSG00000091086.3	ENSMUST00000171120.3	871	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACCATTAAAAGTTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	110961711	110962582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_110961700_110962600
ENSMUST00000171172.3	chr17	-	1272	3	FSM	ENSMUSG00000034509.10	ENSMUST00000171172.3	1272	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	318	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTTGATTTAGACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	46464479	46458312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_46459211_46463704_46463968_46464368
ENSMUST00000171183.2	chr7	-	883	2	FSM	ENSMUSG00000045948.9	ENSMUST00000171183.2	883	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGTGCGGTGTCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	28441195	28439065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_28439665_28440911
ENSMUST00000171210.3	chr12	+	1858	11	FSM	ENSMUSG00000059060.16	ENSMUST00000171210.3	1858	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCAAAGCTGGGCCACT	NA	NA	NA	NA	NA	NA	NA	NA	79344055	79861464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_79344107_79347315_79347422_79349249_79349364_79350105_79350223_79361605_79361743_79371740_79371861_79373994_79374179_79704597_79704695_79813844_79813949_79849963_79850043_79860715
ENSMUST00000171229.8	chr13	-	1426	10	FSM	ENSMUSG00000021417.16	ENSMUST00000171229.8	1426	10	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	NA	NA	NA	NA	NA	NA	NA	35178127	35161730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177996
ENSMUST00000171235.3	chr14	-	798	1	FSM	ENSMUSG00000090305.3	ENSMUST00000171235.3	798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGTACACTAAATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	30799392	30798594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_30798600_30799400
ENSMUST00000171306.5	chr6	-	989	5	FSM	ENSMUSG00000030361.17	ENSMUST00000171306.5	989	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGCCCTGGATTCTAATC	NA	NA	NA	NA	NA	NA	NA	NA	128599835	128586313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_128586815_128595016_128595133_128595419_128595575_128596062_128596138_128599693
ENSMUST00000171324.3	chr13	+	5087	3	FSM	ENSMUSG00000091387.3	ENSMUST00000171324.3	5087	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCAACTCCTCGGACTT	NA	NA	NA	NA	NA	NA	NA	NA	97061196	97087414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_97061457_97072387_97072505_97082704
ENSMUST00000171325.9	chr16	+	1200	8	FSM	ENSMUSG00000022800.15	ENSMUST00000171325.9	1792	8	62	530	62	305	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGCGTGGGATTTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	32698220	32726305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718770_32718841_32719247_32719310_32722788_32722916_32725901
ENSMUST00000171368.8	chr3	+	878	5	FSM	ENSMUSG00000015749.13	ENSMUST00000171368.8	878	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATTCTCATTCATCTTC	NA	NA	NA	NA	NA	NA	NA	NA	95836636	95852754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_95836963_95844431_95844508_95845193_95845352_95851618_95851674_95852491
ENSMUST00000171419.8	chr5	-	930	3	ISM	ENSMUSG00000029580.15	ENST00000432588.6	1205	4	-133	503	-133	-503	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGGGTAAGTTGTAGCC	NA	NA	NA	NA	NA	NA	NA	NA	142891576	142890105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_142890538_142890991_142891232_142891318
ENSMUST00000171473.3	chr3	-	1630	1	FSM	ENSMUSG00000091405.3	ENSMUST00000171473.3	1630	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTATAGTCAAACAAACAAA	NA	NA	NA	NA	NA	NA	NA	NA	96170627	96168997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_96169000_96170600
ENSMUST00000171526.2	chr17	-	381	3	ISM	ENSMUSG00000023883.14	ENSMUST00000024657.12	1663	12	14534	69	14534	-69	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGATATTTGGTGCCAAT	NA	NA	NA	NA	NA	NA	NA	NA	15167001	15165339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_15165447_15166460_15166650_15166916
ENSMUST00000171597.2	chr1	+	2098	6	FSM	ENSMUSG00000026036.18	ENSMUST00000171597.2	2098	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGGACACACTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	58486789	58501425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_58487249_58489545_58489709_58491247_58491375_58494755_58494895_58496938_58497023_58500299
ENSMUST00000171621.3	chr3	+	1582	2	FSM	ENSMUSG00000046688.15	ENSMUST00000171621.3	2547	2	0	965	0	-530	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTCTTGGTGGCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	127584452	127591073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_127585179_127590217
ENSMUST00000171632.2	chr9	-	475	1	FSM	ENSMUSG00000090516.2	ENSMUST00000171632.2	475	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGACTCTGGCCAATGCCC	NA	NA	NA	NA	NA	NA	NA	NA	59379516	59379041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_59379000_59379500
ENSMUST00000171666.8	chr15	-	808	8	NNC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	1406	-74	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCCCAAGGTGGGCATCT	NA	NA	NA	NA	NA	NA	NA	NA	89312696	89310643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_-_89310865_89311013_89311096_89311526_89311603_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613
ENSMUST00000171687.8	chr16	+	2084	9	FSM	ENSMUSG00000002845.15	ENSMUST00000171687.8	2667	9	49	534	49	438	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCTAAACTGGTGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	38383222	38411990	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408666_38411273
ENSMUST00000171696.8	chr2	+	1193	5	FSM	ENSMUSG00000017679.17	ENSMUST00000171696.8	4522	5	8	3321	0	-809	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCACAGGCTGAGATGCCA	NA	NA	NA	NA	NA	NA	NA	NA	163444241	163457611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_163444335_163449128_163449595_163453678_163453873_163455654_163455766_163457282
ENSMUST00000171721.8	chr19	-	2660	19	FSM	ENSMUSG00000024969.16	ENST00000402010.8	4453	19	430	1363	29	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	7318557	7254123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_7254816_7255406_7255452_7257350_7257378_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
ENSMUST00000171735.2	chr14	-	1763	3	FSM	ENSMUSG00000021910.16	ENSMUST00000171735.2	1763	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAATCAAGC	NA	NA	NA	NA	NA	NA	NA	NA	30928658	30923822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_30925367_30926398_30926483_30928523
ENSMUST00000171788.8	chr8	-	3552	8	FSM	ENSMUSG00000014837.16	ENSMUST00000171788.8	3552	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGTGGCTTCTGTCTA	NA	NA	NA	NA	NA	NA	NA	NA	106016160	106007041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106015400_106015798_106016035
ENSMUST00000171808.8	chr5	-	1428	12	FSM	ENSMUSG00000002297.17	ENSMUST00000171808.8	2402	12	47	927	11	-784	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGACAGGAAACCAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	8472669	8447937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_8448163_8449687_8449813_8453079_8453192_8453611_8453741_8454870_8454917_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
ENSMUST00000171845.8	chr2	+	938	9	FSM	ENSMUSG00000051154.12	ENSMUST00000171845.8	938	9	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTTTGGAGTTTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	18677194	18681041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_18677219_18677253_18677415_18678705_18678818_18678935_18679000_18679091_18679127_18679466_18679528_18679619_18679677_18679760_18679821_18680677
ENSMUST00000171847.8	chr17	-	2033	13	FSM	ENSMUSG00000023942.16	ENSMUST00000171847.8	2033	13	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	45910529	45896125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45910398
ENSMUST00000171859.8	chr13	+	433	5	ISM	ENSMUSG00000025875.15	ENST00000503045.5	801	8	101	1071	50	-970	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTTCCTGCTGTGTTAG	NA	NA	NA	NA	NA	NA	NA	NA	54937457	54942961	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_54937495_54940421_54940473_54940552_54940700_54941076_54941179_54942865
ENSMUST00000172088.8	chr6	+	2812	4	FSM	ENSMUSG00000042097.18	ENSMUST00000172088.8	2812	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTCCAATGTGTTCATTT	NA	NA	NA	NA	NA	NA	NA	NA	117840037	117849726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_117840104_117843355_117843536_117846178_117846235_117847216
ENSMUST00000172132.10	chr6	-	1607	7	FSM	ENSMUSG00000023456.17	ENSMUST00000172132.10	1607	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGTCCCAGGCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	124791259	124787548	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
ENSMUST00000172132.10-0	chr6	-	1304	7	FSM	ENSMUSG00000023456.17	ENSMUST00000239432.2	1601	7	142	155	142	-155	multi-exon	FALSE	canonical	NA	NA	NA	NA	4022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATGTAAGGGAAATAAAC	NA	NA	NA	NA	NA	NA	NA	NA	124791117	124787709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
ENSMUST00000172159.8	chr2	-	2423	7	FSM	ENSMUSG00000026875.15	ENSMUST00000172159.8	3436	7	27	986	0	520	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAGCTCCCAAGTGCTAG	NA	NA	NA	NA	NA	NA	NA	NA	34848148	34832747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_34834104_34835409_34835559_34836693_34836872_34838152_34838564_34839050_34839117_34846207_34846293_34847970
ENSMUST00000172165.8	chr1	+	3192	12	FSM	ENSMUSG00000116048.2	ENSMUST00000172165.8	3192	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	93406714	93437455	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_93406791_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ENSMUST00000172202.2	chr4	+	1527	2	FSM	ENSMUSG00000091021.2	ENSMUST00000172202.2	1527	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCAGTCTCCCAGGCAAT	NA	NA	NA	NA	NA	NA	NA	NA	132079082	132080693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_132080032_132080115
ENSMUST00000172206.4	chr7	-	342	1	FSM	ENSMUSG00000090460.4	ENSMUST00000172206.4	342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTGCTTTTGTTAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	126885557	126885215	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126885200_126885600
ENSMUST00000172229.8	chr17	-	1446	3	FSM	ENSMUSG00000047407.18	ENSMUST00000172229.8	1446	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAGCATTTTCTTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	71156785	71151199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_71152268_71153166_71153394_71156634
ENSMUST00000172247.8	chr3	+	658	7	ISM	ENSMUSG00000004032.11	ENSMUST00000004134.11	945	8	120	341	-13	-204	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGCCCAACAGCAGCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	107803256	107805661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_107803315_107803613_107803690_107803941_107804007_107804603_107804686_107804777_107804879_107805282_107805379_107805481
ENSMUST00000172282.8	chr10	+	1924	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	178	1008	-3	-489	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCAGGAAATGGCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	79690438	79699258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ENSMUST00000172306.3	chr9	+	1749	3	FSM	ENSMUSG00000053716.10	ENSMUST00000172306.3	3213	3	0	1464	0	-1464	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCTATTTTTAAAGACATA	NA	NA	NA	NA	NA	NA	NA	NA	106245830	106251459	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_106246523_106247899_106248335_106250837
ENSMUST00000172352.8	chr7	+	1529	7	FSM	ENSMUSG00000030699.17	ENSMUST00000172352.8	1529	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGAGTCCAGCTGGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	126380654	126384531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126380797_126380884_126381120_126382016_126382285_126382376_126382524_126382601_126382750_126383863_126384048_126384126
ENSMUST00000172387.8	chr15	-	1223	7	FSM	ENSMUSG00000022370.14	ENSMUST00000172387.8	1223	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	55421144	55397489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55411537_55411632_55418715_55418840_55420653
ENSMUST00000172387.8-0	chr15	-	1025	7	FSM	ENSMUSG00000022370.14	ENSMUST00000172387.8	1223	7	134	64	134	-64	multi-exon	FALSE	canonical	NA	NA	NA	NA	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTCCTGTGTAACCTGC	NA	NA	NA	NA	NA	NA	NA	NA	55421010	55397553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55411537_55411632_55418715_55418840_55420653
ENSMUST00000172445.4	chr10	-	624	1	FSM	ENSMUSG00000071303.5	ENSMUST00000172445.4	624	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	601	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCTCATGCGTAGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	56231170	56230546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_56230500_56231200
ENSMUST00000172448.2	chr7	-	2460	2	FSM	ENSMUSG00000062040.15	ENSMUST00000172448.2	2460	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGGACCCATTGAGGACA	NA	NA	NA	NA	NA	NA	NA	NA	29598288	29593503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_29595852_29598176
ENSMUST00000172474.2	chr14	+	207	1	FSM	ENSMUSG00000092358.2	ENSMUST00000172474.2	207	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAACAAGAAAATATTT	NA	NA	NA	NA	NA	NA	NA	NA	57935469	57935676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_57935500_57935700
ENSMUST00000172495.8	chr6	-	529	5	NNC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	5612	-6440	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCATCAGGCAGAGCACTA	NA	NA	NA	NA	NA	NA	NA	NA	115009225	114987805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_114987831_114989118_114989281_114993043_114993190_115002234_115002386_115009180
ENSMUST00000172501.8	chr17	-	579	5	FSM	ENSMUSG00000092203.8	ENSMUST00000172501.8	579	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTAAATAGACTTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	35171444	35169218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111_35171150_35171327
ENSMUST00000172503.3	chr17	+	1744	7	FSM	ENSMUSG00000073411.13	ENSMUST00000172503.3	1744	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTTGAAAGTGACCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	35482071	35486329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35482163_35482354_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485442_35485491_35485663
ENSMUST00000172518.8	chr17	-	710	5	FSM	ENSMUSG00000036315.14	ENSMUST00000172518.8	710	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGATGTTATGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	37269425	37265249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040_37269189_37269269
ENSMUST00000172572.9	chr3	-	1054	7	FSM	ENSMUSG00000092607.10	ENSMUST00000172572.9	1054	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCGCTGCCCTTCATGG	NA	NA	NA	NA	NA	NA	NA	NA	95041322	95036846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_95037195_95037474_95037670_95040135_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
ENSMUST00000172585.9	chr6	-	1086	11	NIC	ENSMUSG00000029830.16	novel	2366	16	NA	NA	3	-773	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACCTGCAATACTAATGTG	NA	NA	NA	NA	NA	NA	NA	NA	38008024	37961446	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_37961459_37963432_37963547_37988173_37988264_37989225_37989308_37991691_37991804_37993954_37994167_37996612_37996687_37998483_37998613_37999928_38000055_38003884_38003949_38007953
ENSMUST00000172618.8	chr17	-	1559	8	FSM	ENSMUSG00000015120.16	ENSMUST00000172618.8	1559	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCTAGCAGCTAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	25492888	25481152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25491511_25491740_25492294
ENSMUST00000172726.2	chr5	+	277	1	FSM	ENSMUSG00000092344.2	ENSMUST00000172726.2	277	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATCACTGTTGAAATGGT	NA	NA	NA	NA	NA	NA	NA	NA	25596605	25596882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_25596600_25596900
ENSMUST00000172820.2	chr10	-	574	2	FSM	ENSMUSG00000001666.9	ENSMUST00000172820.2	574	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGACTTCTTTGCTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	75608868	75607063	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_75607341_75608571
ENSMUST00000172883.8	chr6	-	460	4	NIC	ENSMUSG00000030188.13	novel	767	5	NA	NA	113	82	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAAAAAACCCAGGTTAC	NA	NA	NA	NA	NA	NA	NA	NA	131270094	131261485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_131261692_131262605_131262689_131264998_131265110_131270034
ENSMUST00000172912.8	chr17	-	1570	8	FSM	ENSMUSG00000061232.17	ENSMUST00000172912.8	1570	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTATGCTGTGTGTATCTG	NA	NA	NA	NA	NA	NA	NA	NA	34219263	34214990	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34215451_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
ENSMUST00000172974.8	chr6	+	3063	6	FSM	ENSMUSG00000029767.17	ENSMUST00000172974.8	3063	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTATGTGTCTTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	29348067	29376671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29374397
ENSMUST00000172983.8	chr7	-	817	5	NNC	ENSMUSG00000002985.17	novel	1408	4	NA	NA	12	-348	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAGGCCCGTGACCGCCT	NA	NA	NA	NA	NA	NA	NA	NA	19432963	19430544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_19431029_19431403_19431573_19432112_19432179_19432328_19432399_19432935
ENSMUST00000172993.2	chr17	+	444	4	NNC	ENSMUSG00000024392.18	novel	3536	24	NA	NA	9775	-1	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTCGAGTACCTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	35364863	35366295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_+_35364898_35365001_35365146_35365242_35365330_35366116
ENSMUST00000173004.2	chr17	+	870	6	FSM	ENSMUSG00000007050.18	ENSMUST00000173004.2	870	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCCTGGTTTGTCGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	35201134	35204865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35201344_35201595_35201664_35203955_35203985_35204084_35204116_35204224_35204285_35204392
ENSMUST00000173065.8	chr17	+	961	7	ISM	ENSMUSG00000024369.17	ENSMUST00000097343.11	1607	11	17	2280	0	-2165	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGACCGAGATCGGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	35069383	35073065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35069651_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783
ENSMUST00000173068.8	chr4	-	726	7	ISM	ENSMUSG00000040606.15	ENST00000376030.7	2105	14	51154	13444	51154	-13444	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAGAGGAGCAGATGGAC	NA	NA	NA	NA	NA	NA	NA	NA	141886365	141845543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_141845592_141868983_141869108_141870604_141870656_141874328_141874460_141878156_141878347_141881740_141881912_141886354
ENSMUST00000173084.8	chr17	-	1286	8	FSM	ENSMUSG00000015120.16	ENSMUST00000173084.8	1286	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGGTTTTTGTTGCATT	NA	NA	NA	NA	NA	NA	NA	NA	25492357	25480894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25491511_25491740_25492294
ENSMUST00000173085.8	chr9	-	1432	9	NNC	ENSMUSG00000053110.14	novel	4171	9	NA	NA	-74	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGCAGGGAGCCACTCTG	NA	NA	NA	NA	NA	NA	NA	NA	8004391	7934497	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_-_7934734_7936515_7936629_7938408_7938540_7939140_7939154_7952953_7953136_7962289_7962404_7973796_7973913_8001457_8001709_8004115
ENSMUST00000173086.2	chr2	-	580	1	FSM	ENSMUSG00000075279.6	ENSMUST00000173086.2	580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACACTGACTGGCCGGGCG	NA	NA	NA	NA	NA	NA	NA	NA	74422253	74421673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_74421700_74422300
ENSMUST00000173097.8	chr17	+	1536	10	ISM	ENSMUSG00000024151.14	ENSMUST00000024967.14	3283	16	279	15223	279	-15223	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTTTGGATATTATTTC	NA	NA	NA	NA	NA	NA	NA	NA	87980036	88015918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879
ENSMUST00000173114.8	chr17	-	917	7	FSM	ENSMUSG00000024387.14	ENSMUST00000173114.8	917	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCTCCTACTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	35340405	35335171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340286
ENSMUST00000173122.2	chr17	-	258	2	ISM	ENSMUSG00000024446.14	ENSMUST00000077535.5	437	4	1787	22	1787	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTGGTATCTCAACT	NA	NA	NA	NA	NA	NA	NA	NA	36566961	36566558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_36566691_36566835
ENSMUST00000173158.8	chr13	-	1415	8	NNC	ENSMUSG00000021519.12	novel	1479	8	NA	NA	21	-3	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAATGTTTCTGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	67081131	67060189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076352_67077948_67078288_67080998
ENSMUST00000173185.2	chr9	-	1458	6	FSM	ENSMUSG00000092212.4	ENSMUST00000173185.2	1458	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGTTGTACTGTCTACT	NA	NA	NA	NA	NA	NA	NA	NA	119060758	119049553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_119049990_119050186_119050403_119051512_119051622_119051804_119052020_119059637_119059742_119060380
ENSMUST00000173192.2	chr6	+	387	1	FSM	ENSMUSG00000101878.2	ENSMUST00000173192.2	387	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2572	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGCCTGGATTCCTTATT	NA	NA	NA	NA	NA	NA	NA	NA	116150697	116151084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_116150700_116151100
ENSMUST00000173208.2	chr5	-	1247	1	FSM	ENSMUSG00000092183.2	ENSMUST00000173208.2	1247	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGTTTTGCTTCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	114913044	114911797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_114911800_114913000
ENSMUST00000173253.2	chr17	-	1193	3	ISM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	1571	1145	1571	-1145	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	2879	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGTCTCTGAGTACCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	36147627	36145957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_36146932_36147054_36147166_36147519
ENSMUST00000173364.2	chr5	+	1249	3	NNC	ENSMUSG00000053647.5	novel	2537	3	NA	NA	0	-1283	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTTTGCTGATGTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	139408905	139412272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_+_139409110_139409420_139409628_139411434
ENSMUST00000173393.8	chr2	+	2071	5	FSM	ENSMUSG00000027510.18	ENSMUST00000173393.8	2071	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGTTTGAGGTTTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	172862290	172876527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_172862355_172863464_172864064_172864584_172864709_172865119_172865175_172875298
ENSMUST00000173477.8	chr3	-	892	8	NNC	ENSMUSG00000064068.16	novel	1522	8	NA	NA	67	-121	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGATGGCGTTCCTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	89121147	89116519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_-_89116729_89116811_89116967_89117413_89117491_89117572_89117756_89117890_89117981_89119989_89120070_89120183_89120254_89121119
ENSMUST00000173492.9	chr17	-	2357	11	FSM	ENSMUSG00000079553.12	ENSMUST00000173492.9	2357	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	362	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTTTTGCTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	34109635	34094632	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105876_34109451
ENSMUST00000173499.2	chr19	-	485	2	FSM	ENSMUSG00000092341.4	ENSMUST00000173499.2	485	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGACATACAGGAAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	5852699	5851943	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5851995_5852265
ENSMUST00000173511.2	chr10	+	488	2	NNC	ENSMUSG00000019794.14	novel	1774	11	NA	NA	35233	-1	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTGTTTCAATTTAGCA	NA	NA	NA	NA	NA	NA	NA	NA	7636996	7638912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_+_7637126_7638553
ENSMUST00000173525.2	chr11	-	930	4	ISM	ENSMUSG00000042506.16	ENSMUST00000041683.9	4434	13	17663	2234	17663	-2234	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGGCCACCCACAGGCTA	NA	NA	NA	NA	NA	NA	NA	NA	61048218	61044844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_61045340_61046005_61046156_61046593_61046657_61047996
ENSMUST00000173558.2	chr17	-	763	5	ISM	ENSMUSG00000024393.15	ENSMUST00000025253.12	6888	31	14531	101	12603	-89	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTCTGGAGTCTCACTT	NA	NA	NA	NA	NA	NA	NA	NA	35369342	35368152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203
ENSMUST00000173601.2	chr15	-	550	4	ISM	ENSMUSG00000042632.18	ENST00000332509.8	2822	17	19455	19114	19167	-19114	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAGGCCGTAGAAGCGAG	NA	NA	NA	NA	NA	NA	NA	NA	79192997	79189870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79190012_79190483_79190667_79191512_79191610_79192868
ENSMUST00000173623.2	chr2	-	1428	3	FSM	ENSMUSG00000001815.16	ENSMUST00000173623.2	1428	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACGCCGCCGCCAGGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	74489763	74485959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_74486680_74488110_74488392_74489336
ENSMUST00000173627.8	chr13	+	1233	10	FSM	ENSMUSG00000025451.16	ENSMUST00000173627.8	1233	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTTTGAGTTATGTTACT	NA	NA	NA	NA	NA	NA	NA	NA	119565668	119593741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_119565697_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119593523
ENSMUST00000173666.8	chr3	+	361	4	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	18	-424	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	361	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATACGTGGAGATGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	137570351	137571844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_+_137570448_137570893_137570972_137571280_137571395_137571771
ENSMUST00000173713.8	chr17	-	890	7	FSM	ENSMUSG00000015120.16	ENSMUST00000173713.8	890	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1044	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAGCAGCTAGTTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	25493284	25481148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493135
ENSMUST00000173729.8	chr12	-	1701	7	FSM	ENSMUSG00000062352.16	ENSMUST00000173729.8	1701	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATCACTGCATTAAGAC	NA	NA	NA	NA	NA	NA	NA	NA	21336098	21320093	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21335852
ENSMUST00000173824.8	chr7	+	2178	14	FSM	ENSMUSG00000038943.17	ENSMUST00000173824.8	2912	14	0	734	0	-67	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGCAACCACATGGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	79944226	79965265	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79964861
ENSMUST00000173836.8	chr5	+	849	3	ISM	ENSMUSG00000063646.19	ENST00000282924.9	2415	13	-112	33850	-112	-33850	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGCAGGAGATCCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	37185678	37248791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_37185944_37242579_37242843_37248470
ENSMUST00000173844.8	chr17	-	382	4	FSM	ENSMUSG00000067288.14	ENSMUST00000173844.8	382	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	34043536	34042023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34042091_34042166_34042305_34043272_34043321_34043407
ENSMUST00000173869.8	chr17	-	1859	7	NNC	ENSMUSG00000002289.17	novel	3308	7	NA	NA	287	-1158	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACATTTTGTTCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	34000517	33993881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_-_33994543_33995923_33996206_33996293_33996390_33997345_33997460_33999503_33999618_33999756_33999868_34000036
ENSMUST00000173874.8	chr17	+	1117	5	ISM	ENSMUSG00000040482.17	ENSMUST00000180043.8	1447	7	0	538	0	-489	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTCCTACCATGGAGATG	NA	NA	NA	NA	NA	NA	NA	NA	35055994	35057624	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35056193_35056368_35056731_35056876_35057113_35057201_35057422_35057523
ENSMUST00000173875.9	chr18	-	1979	5	FSM	ENSMUSG00000006050.13	ENSMUST00000173875.9	1979	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTTCTGTCTGCATGT	NA	NA	NA	NA	NA	NA	NA	NA	36803868	36799733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803056_36803183_36803300
ENSMUST00000173900.2	chr17	+	813	2	FSM	ENSMUSG00000092368.2	ENSMUST00000173900.2	1111	2	0	298	0	-298	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGATGTAGGCTGCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	36305344	36349029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_36305453_36348324
ENSMUST00000173927.8	chr5	-	1011	7	FSM	ENSMUSG00000029209.16	ENSMUST00000173927.8	1011	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAAACAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	69749617	69733154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_69733297_69735320_69735496_69736850_69737030_69742316_69742500_69743807_69743910_69747003_69747167_69749550
ENSMUST00000173929.8	chr1	+	680	3	ISM	ENSMUSG00000026596.14	ENST00000392043.4	1847	9	-4	11531	-4	-11531	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATCACTCCAGTTAATAG	NA	NA	NA	NA	NA	NA	NA	NA	156386355	156452946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_156386776_156450054_156450226_156452857
ENSMUST00000173969.2	chr12	-	1152	2	FSM	ENSMUSG00000091931.6	ENSMUST00000173969.2	1152	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	102724059	102719533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_102720426_102723799
ENSMUST00000173980.2	chr8	-	621	4	FSM	ENSMUSG00000078143.4	ENSMUST00000173980.2	621	4	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTAGCCCCGAACCCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	110595064	110586615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_110586664_110587455_110587662_110587731_110587962_110594927
ENSMUST00000173987.2	chr17	-	924	5	NNC	ENSMUSG00000077450.14	novel	6109	5	NA	NA	10	-664	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCCCTTCACCAGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	33979254	33966387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_-_33966788_33967483_33967560_33967840_33968035_33968755_33968952_33979196
ENSMUST00000174004.2	chr17	+	1466	2	FSM	ENSMUSG00000050088.10	ENSMUST00000174004.2	1466	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATGTTTAAGGTCATCG	NA	NA	NA	NA	NA	NA	NA	NA	15163530	15165248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_15163582_15163833
ENSMUST00000174048.8	chr17	-	560	5	FSM	ENSMUSG00000024309.16	ENSMUST00000174048.8	560	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACTTTACAGCCAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	34159299	34157892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997_34159140_34159270
ENSMUST00000174089.2	chr15	-	708	3	ISM	ENSMUSG00000042632.18	ENST00000332509.8	2822	17	10240	25181	9952	-25181	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGACTTGGGGGCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	79202212	79195937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79196178_79197147_79197364_79201960
ENSMUST00000174094.2	chr17	-	934	5	FSM	ENSMUSG00000073403.12	ENSMUST00000174094.2	934	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATTAGAAAGGATCT	NA	NA	NA	NA	NA	NA	NA	NA	36456815	36452649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_36452926_36453223_36453272_36455803_36456080_36456279_36456550_36456751
ENSMUST00000174144.8	chr7	-	816	4	NNC	ENSMUSG00000002985.17	novel	1408	4	NA	NA	-214	-349	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCAGGCCCGTGACCGCC	NA	NA	NA	NA	NA	NA	NA	NA	19432546	19430545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_19431029_19431403_19431573_19432112_19432179_19432448
ENSMUST00000174209.8	chr7	-	1496	7	FSM	ENSMUSG00000015134.16	ENSMUST00000174209.8	1496	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGACTCTGGCCTACAACC	NA	NA	NA	NA	NA	NA	NA	NA	66076337	66058258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_66059028_66061249_66061379_66062105_66062168_66062648_66062779_66068850_66068992_66071958_66072064_66076177
ENSMUST00000174220.2	chr11	-	889	5	ISM	ENSMUSG00000042506.16	ENSMUST00000041683.9	4434	13	26	10987	26	-10987	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAGAGGAAATGGAAT	NA	NA	NA	NA	NA	NA	NA	NA	61065855	61053597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_61053823_61054551_61054654_61057496_61057611_61059085_61059219_61065540
ENSMUST00000174230.2	chr13	-	1053	7	FSM	ENSMUSG00000021418.16	ENSMUST00000174230.2	1053	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAGAGTCACACCTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	36090327	36080697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36088401_36088547_36090186
ENSMUST00000174250.4	chr17	-	1052	6	FSM	ENSMUSG00000067203.9	ENSMUST00000174250.4	1052	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCAGCTGCCTGGAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	34197764	34194049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34194083_34194453_34194588_34194714_34194990_34196744_34197021_34197227_34197498_34197700
ENSMUST00000174287.2	chr19	-	890	2	FSM	ENSMUSG00000092274.4	ENSMUST00000174287.2	3004	2	439	1675	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1094	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGCAGCGTGCTGCACTG	NA	NA	NA	NA	NA	NA	NA	NA	5895065	5894009	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5894787_5894952
ENSMUST00000174299.9	chr17	+	2577	10	FSM	ENSMUSG00000039656.18	ENSMUST00000174299.9	2577	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTTTCTGGACTGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	34250825	34257373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_34251198_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255846_34255939_34256140_34256247_34256357
ENSMUST00000174353.2	chr19	+	1580	2	FSM	ENSMUSG00000043969.5	ENST00000442245.5	2650	2	1067	3	1067	-3	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGAGTAGTTGTCTTGGG	NA	NA	NA	NA	NA	NA	NA	NA	59447950	59453785	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_59448057_59452311
ENSMUST00000174387.2	chr9	-	1901	14	FSM	ENSMUSG00000032376.13	ENSMUST00000174387.2	1901	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGACTGCTGTCTTCATA	NA	NA	NA	NA	NA	NA	NA	NA	66500288	66425356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66449794_66449909_66451227_66451311_66453025_66453108_66455153_66455238_66474124_66474186_66500065
ENSMUST00000174399.8	chr17	-	728	7	ISM	ENSMUSG00000073422.12	ENSMUST00000237759.2	1133	8	191	375	179	-375	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAGTCAGTGGTATGAGG	NA	NA	NA	NA	NA	NA	NA	NA	34246837	34245381	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596
ENSMUST00000174426.2	chr17	-	396	4	FSM	ENSMUSG00000024309.16	ENSMUST00000174426.2	396	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGCCAATAAAATGTAAACA	NA	NA	NA	NA	NA	NA	NA	NA	34159304	34157919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34159270
ENSMUST00000174493.8	chr17	+	1254	7	FSM	ENSMUSG00000007039.13	ENSMUST00000174493.8	1254	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGACTGGTTTCTCG	NA	NA	NA	NA	NA	NA	NA	NA	35278076	35281071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280576_35280766
ENSMUST00000174510.8	chr10	+	2031	6	FSM	ENSMUSG00000009293.18	ENSMUST00000174510.8	2031	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1627	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGTTGTGTGGTGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	77458108	77481827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_77458251_77466559_77466596_77466682_77466729_77477293_77477413_77479302_77479444_77480280
ENSMUST00000174514.2	chr19	+	669	3	FSM	ENSMUSG00000024856.11	ENSMUST00000174514.2	669	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTACTTCCCCATCCTC	NA	NA	NA	NA	NA	NA	NA	NA	4147400	4148465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_4147508_4147816_4147918_4148004
ENSMUST00000174543.2	chr17	+	249	1	FSM	ENSMUSG00000101932.2	ENSMUST00000174543.2	249	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGGATTTCCTCGACTT	NA	NA	NA	NA	NA	NA	NA	NA	36536914	36537163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_36536900_36537200
ENSMUST00000174561.8	chr3	+	439	5	FSM	ENSMUSG00000037894.14	ENSMUST00000174561.8	810	5	0	371	0	-60	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGCCTGGATTCCTTATT	NA	NA	NA	NA	NA	NA	NA	NA	137570333	137572208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571840_137571902_137572146
ENSMUST00000174577.2	chr9	-	1444	9	NNC	ENSMUSG00000053110.14	novel	4171	9	NA	NA	-74	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGCAGGGAGCCACTCTG	NA	NA	NA	NA	NA	NA	NA	NA	8004391	7934497	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_-_7934734_7936515_7936629_7938408_7938540_7939140_7939166_7952953_7953136_7962289_7962404_7973796_7973913_8001457_8001709_8004115
ENSMUST00000174583.8	chr1	+	395	4	FSM	ENSMUSG00000048000.16	ENST00000492910.5	649	4	19	235	18	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGGAATTGGAATAGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	87254769	87282904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87282702
ENSMUST00000174609.9	chr17	-	527	5	FSM	ENSMUSG00000008668.16	ENSMUST00000174609.9	527	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	34174637	34170972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34171093_34171194_34171268_34171376_34171566_34174051_34174151_34174591
ENSMUST00000174647.2	chr17	+	1736	9	FSM	ENSMUSG00000064120.15	ENST00000373195.7	1740	9	4	0	4	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCCACACTCTCCAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	49735469	49761818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_49735593_49742122_49742291_49746449_49746615_49756127_49756190_49756462_49756575_49756776_49756890_49757289_49757401_49759238_49759360_49761057
ENSMUST00000174651.2	chr12	-	1170	2	FSM	ENSMUSG00000041716.8	ENSMUST00000174651.2	2795	2	671	954	671	-954	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGAGAAAAGAAGGCGGTT	NA	NA	NA	NA	NA	NA	NA	NA	102724260	102708944	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_102709654_102723799
ENSMUST00000174661.9	chr3	+	869	5	FSM	ENSMUSG00000028023.17	ENSMUST00000174661.9	1942	5	91	982	43	-289	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTCCAGCATGGTGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	128993617	129012257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_128993812_128997585_128997642_128998088_128998227_129009287_129009494_129011982
ENSMUST00000174664.2	chr4	+	1294	3	FSM	ENSMUSG00000092345.2	ENSMUST00000174664.2	1294	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCCATGACAGCAGTAGT	NA	NA	NA	NA	NA	NA	NA	NA	59003209	59041888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_59003558_59039226_59039359_59041074
ENSMUST00000174672.2	chr17	+	2597	3	FSM	ENSMUSG00000036036.16	ENSMUST00000174672.2	2597	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	37314557	37321524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_37315796_37316941_37317087_37320310
ENSMUST00000174706.8	chr7	+	732	8	ISM	ENSMUSG00000025495.16	ENSMUST00000026568.10	3624	12	70	4615	70	-4615	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTGCAACGGGCTGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	140711268	140732904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887
ENSMUST00000174714.8	chr17	-	520	4	FSM	ENSMUSG00000092203.8	ENSMUST00000174714.8	520	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	35171424	35169216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_35169452_35169673_35169824_35171111_35171150_35171327
ENSMUST00000174719.8	chr11	-	1318	10	NIC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	-2611	2	combination_of_known_junctions	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGAACAGCCTGTGTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	60697847	60679969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771
ENSMUST00000174745.8	chr17	-	536	4	ISM	ENSMUSG00000008668.16	ENSMUST00000008812.9	560	5	465	0	451	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	34174186	34170972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051
ENSMUST00000174769.2	chr6	-	1029	3	FSM	ENSMUSG00000033735.10	ENSMUST00000174769.2	1029	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGCAATAGAGTGTGCG	NA	NA	NA	NA	NA	NA	NA	NA	85114738	85110668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_85111271_85113804_85113914_85114420
ENSMUST00000174779.8	chr17	-	632	5	FSM	ENSMUSG00000024387.14	ENSMUST00000174779.8	632	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTCTCCTACTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	35338751	35335173	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729
ENSMUST00000174779.8-0	chr17	-	691	5	FSM	ENSMUSG00000024387.14	ENSMUST00000174779.8	632	5	-61	2	-61	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAGCTGTCTCCTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	35338812	35335175	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729
ENSMUST00000174794.2	chr9	-	758	6	ISM	ENSMUSG00000032113.17	ENSMUST00000173963.9	1509	11	3118	3587	3118	-3554	internal_fragment	FALSE	canonical	NA	NA	NA	NA	164	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTGTCCTGAGCATATGC	NA	NA	NA	NA	NA	NA	NA	NA	36634041	36625039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899
ENSMUST00000174799.2	chr19	+	843	4	NIC	ENSMUSG00000024856.11	novel	1080	4	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTCTCAGCCTTTCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	4147401	4149010	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_+_4147508_4147816_4147908_4148004_4148138_4148497
ENSMUST00000174848.8	chr6	-	736	5	NNC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	21	-7812	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGAGACTCTGCTGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	115014816	114989177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_114989281_115002234_115002386_115009180_115009274_115011911_115012095_115014610
ENSMUST00000175651.2	chr4	-	634	2	ISM	ENSMUSG00000028607.17	ENST00000636891.1	2112	5	10734	3522	10734	-3522	internal_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGAGTTTCCCCTGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	107769963	107764914	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_107765423_107769837
ENSMUST00000175679.8	chr4	-	728	9	NNC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	5026	-9595	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGACTACGCCATCATGAC	NA	NA	NA	NA	NA	NA	NA	NA	155840524	155834692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_155834714_155834929_155835051_155835324_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517
ENSMUST00000175714.8	chr15	+	1953	9	FSM	ENSMUSG00000009585.19	ENSMUST00000175714.8	1953	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAAGTTGTGCATGATTG	NA	NA	NA	NA	NA	NA	NA	NA	79776603	79792119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
ENSMUST00000175779.8	chr3	+	3065	22	FSM	ENSMUSG00000028059.17	ENSMUST00000175779.8	3065	22	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACTGAAGAACATTAGTAAA	NA	NA	NA	NA	NA	NA	NA	NA	88523823	88554202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ENSMUST00000175795.4	chr8	-	2748	4	FSM	ENSMUSG00000031734.14	ENSMUST00000175795.4	2748	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCAGGTCTGCCACATGG	NA	NA	NA	NA	NA	NA	NA	NA	92528695	92525152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_92525605_92526038_92526106_92526300_92527427_92527592
ENSMUST00000175860.2	chr3	+	492	1	FSM	ENSMUSG00000093392.2	ENSMUST00000175860.2	492	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	434	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTCTTTTGACTTGCGG	NA	NA	NA	NA	NA	NA	NA	NA	122050376	122050868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_122050400_122050900
ENSMUST00000175873.8	chr9	+	334	3	ISM	ENSMUSG00000049281.17	ENST00000299333.8	1506	7	211	12051	0	-12051	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCATGAAGAGGGAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	40180728	40188447	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_40180899_40181263_40181344_40188363
ENSMUST00000175883.8	chr9	+	2505	15	FSM	ENSMUSG00000032547.13	ENSMUST00000175883.8	2505	15	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCCCCCGCATGGAAAATC	NA	NA	NA	NA	NA	NA	NA	NA	102712115	102784741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_102712439_102739072_102739195_102744753_102744854_102746472_102746608_102748926_102748981_102752937_102753083_102758852_102758954_102763192_102763328_102765668_102765756_102768414_102768485_102774400_102774534_102775657_102775768_102775889_102776050_102783235_102783373_102784048
ENSMUST00000175885.8	chr2	-	2264	17	NIC	ENSMUSG00000034906.16	novel	2695	18	NA	NA	52	-141	combination_of_known_splicesites	TRUE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATCATTTCTCCATAGCC	NA	NA	NA	NA	NA	NA	NA	NA	126975822	126945869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126975768
ENSMUST00000175887.8	chr14	+	809	7	FSM	ENSMUSG00000021996.17	ENSMUST00000175887.8	809	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCTCGCAGAAGATCATG	NA	NA	NA	NA	NA	NA	NA	NA	74973406	74987224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982989_74983158_74987084
ENSMUST00000176008.8	chr12	+	1374	10	FSM	ENSMUSG00000012609.20	ENST00000286650.9	1380	10	7	-1	7	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTGCTCCAATTGCACT	NA	NA	NA	NA	NA	NA	NA	NA	85871758	85912729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85892020_85892128_85896024_85896156_85904153_85904237_85910337_85910408_85911298_85911384_85912295
ENSMUST00000176015.5	chr5	+	980	7	ISM	ENSMUSG00000029223.13	ENST00000284440.9	976	8	611	-3	611	3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTGGTTTTTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	66834234	66844572	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
ENSMUST00000176047.8	chr4	+	2330	9	FSM	ENSMUSG00000028710.19	ENSMUST00000176047.8	2330	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCCACACCCCCACACAC	NA	NA	NA	NA	NA	NA	NA	NA	115642010	115669511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_115642502_115645458_115645568_115647777_115647829_115648419_115648483_115652600_115652652_115653951_115654000_115655162_115655259_115657514_115657623_115668198
ENSMUST00000176090.2	chr8	-	615	3	FSM	ENSMUSG00000046691.15	ENSMUST00000176090.2	615	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGACTTCTTTCCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	107620147	107612676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_107613159_107613551_107613670_107620132
ENSMUST00000176197.9	chr7	+	786	6	ISM	ENSMUSG00000030982.20	ENSMUST00000033280.14	2934	24	42867	7496	42867	-7496	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCCAGCTTGGCCCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	118406213	118433214	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425547_118432924
ENSMUST00000176200.8	chr10	-	162	2	FSM	ENSMUSG00000063320.12	ENSMUST00000176200.8	586	2	109	315	109	-140	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTGAAAGAGAGACGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	82458651	82455999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_82456052_82458541
ENSMUST00000176224.8	chr16	+	501	4	FSM	ENSMUSG00000005982.15	ENSMUST00000176224.8	501	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATTGGGGCAGCCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	3712238	3719803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_3712349_3715114_3715245_3717735_3717833_3719639
ENSMUST00000176250.2	chr9	+	3579	5	FSM	ENSMUSG00000032336.18	ENSMUST00000176250.2	4531	5	0	952	0	-952	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACATTGAGTTGAGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	58536388	58561539	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_58536539_58547951_58548086_58550811_58551086_58557779_58557802_58558540
ENSMUST00000176353.8	chr17	-	2503	20	FSM	ENSMUSG00000052752.16	ENSMUST00000176353.8	2503	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	24746820	24727823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731929_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24735478_24735574_24737715_24737774_24738104_24738221_24746739
ENSMUST00000176381.8	chr19	+	2251	11	FSM	ENSMUSG00000010110.18	ENSMUST00000176381.8	2251	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGGAAGCAGGTGAATT	NA	NA	NA	NA	NA	NA	NA	NA	8718776	8733433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ENSMUST00000176410.8	chr8	-	3275	17	ISM	ENSMUSG00000038291.17	ENSMUST00000170416.8	3067	18	7444	11	7444	-6	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAATCACAGTGCTCAAA	NA	NA	NA	NA	NA	NA	NA	NA	46569739	46486308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_46486860_46487438_46487540_46488574_46488757_46491491_46491559_46494353_46494472_46497004_46497170_46498222_46498337_46500327_46500469_46502402_46502535_46507355_46507518_46508884_46509161_46511503_46511636_46521092_46521275_46533258_46533330_46556551_46556739_46558155_46558329_46569218
ENSMUST00000176419.2	chr8	-	719	3	FSM	ENSMUSG00000014846.13	ENSMUST00000176419.2	719	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGACTGCTGTGTCCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	106195294	106194314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_106194657_106194787_106194942_106195071
ENSMUST00000176506.8	chr7	+	1839	13	FSM	ENSMUSG00000041420.19	ENSMUST00000176506.8	1839	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATTCTCATTTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	15909199	15920429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15912721_15912926_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919447_15919981
ENSMUST00000176515.2	chr8	-	694	4	FSM	ENSMUSG00000046691.15	ENSMUST00000176515.2	694	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGCTCCTTTTCAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	107620233	107612753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_107613159_107613551_107613684_107613932_107613989_107620132
ENSMUST00000176531.8	chr9	-	2310	7	FSM	ENSMUSG00000032041.16	ENSMUST00000176531.8	2310	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	35111224	35098080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110506_35110616_35111152
ENSMUST00000176545.2	chr11	+	356	3	FSM	ENSMUSG00000093483.2	ENSMUST00000176545.2	356	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATTTGTTTGGGTAAGA	NA	NA	NA	NA	NA	NA	NA	NA	83182545	83185458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_83182660_83182799_83182924_83185340
ENSMUST00000176557.8	chr9	+	1898	8	FSM	ENSMUSG00000032336.18	ENSMUST00000176557.8	1898	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	58489688	58560161	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557791_58557802_58558540_58558616_58559141
ENSMUST00000176570.2	chr19	+	563	2	FSM	ENSMUSG00000010110.18	ENSMUST00000176570.2	563	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACAACTTGGTGTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	8726762	8727458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_8727137_8727269
ENSMUST00000176735.8	chr12	+	729	5	NNC	ENSMUSG00000021175.16	novel	2957	10	NA	NA	369	-3285	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTCCCTGTTCGGACA	NA	NA	NA	NA	NA	NA	NA	NA	117807618	117837492	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr12_+_117807693_117828764_117828900_117833743_117833873_117835818_117836173_117837455
ENSMUST00000176740.2	chr1	-	542	4	NIC	ENSMUSG00000026526.15	novel	2636	10	NA	NA	15922	-1010	combination_of_known_splicesites	TRUE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAGACCTTTTTAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	175437279	175428949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_175429133_175431503_175431658_175433620_175433749_175437202
ENSMUST00000176758.3	chr12	-	3598	1	Genic_Genomic	ENSMUSG00000079036.11	novel	NA	NA	NA	NA	14402	329	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGGTTATATGTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	87476207	87472609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr12_-_87472600_87476200
ENSMUST00000176902.8	chr18	+	1100	6	FSM	ENSMUSG00000044024.17	ENSMUST00000176902.8	1835	6	485	250	0	-250	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTCCATCTGGAGATAC	NA	NA	NA	NA	NA	NA	NA	NA	38088676	38091923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_38088970_38089981_38090048_38090141_38090209_38090641_38090828_38091066_38091443_38091811
ENSMUST00000176906.2	chr10	-	509	3	FSM	ENSMUSG00000093674.8	ENSMUST00000176906.2	509	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAACTGCTGTTACGTGT	NA	NA	NA	NA	NA	NA	NA	NA	128384971	128383988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_128384321_128384526_128384550_128384817
ENSMUST00000176939.8	chr19	-	3427	19	FSM	ENSMUSG00000025007.14	ENSMUST00000176939.8	3427	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	40576813	40538700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562660_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
ENSMUST00000177026.3	chr15	-	371	3	FSM	ENSMUSG00000033697.17	ENSMUST00000177026.3	371	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTTCAGCCCATGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	76702196	76642244	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_76642444_76649684_76649852_76702191
ENSMUST00000177121.2	chr5	+	570	2	ISM	ENSMUSG00000042328.14	ENST00000336873.9	1059	9	28742	-267	28742	-13	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCAAAGTGAGTTCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	112523200	112526267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_112523328_112525824
ENSMUST00000177121.2-0	chr5	+	214	2	ISM	ENSMUSG00000042328.14	ENST00000336873.9	1059	9	28742	89	28742	-89	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCAAACCCTCAGGATT	NA	NA	NA	NA	NA	NA	NA	NA	112523200	112525911	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_112523328_112525824
ENSMUST00000177129.8	chr9	-	2366	7	FSM	ENSMUSG00000032041.16	ENSMUST00000177129.8	2366	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	35111284	35098080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110506_35110616_35111156
ENSMUST00000177137.8	chr14	+	853	8	FSM	ENSMUSG00000021996.17	ENSMUST00000177137.8	853	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCCTCAGCCAAGAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	74973406	74987165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983162_74987084
ENSMUST00000177150.2	chr11	+	268	3	FSM	ENSMUSG00000093483.2	ENSMUST00000177150.2	383	3	44	71	1	-69	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCCCTGAATTGGAAT	NA	NA	NA	NA	NA	NA	NA	NA	83182568	83185386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_83182660_83182792_83182924_83185340
ENSMUST00000177163.8	chr10	-	544	3	FSM	ENSMUSG00000093674.8	ENSMUST00000177163.8	544	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	128385022	128383982	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_128384299_128384526_128384550_128384817
ENSMUST00000177181.8	chr14	+	835	8	FSM	ENSMUSG00000021996.17	ENSMUST00000177181.8	835	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCCTCAGCCAAGAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	74973406	74987165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987098
ENSMUST00000177207.2	chr14	+	830	3	FSM	ENSMUSG00000022010.20	ENSMUST00000177207.2	1476	3	0	646	0	-53	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGCCAGAAACAAGACTGCA	NA	NA	NA	NA	NA	NA	NA	NA	76741653	76744557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_76741734_76742688_76742738_76743856
ENSMUST00000177213.8	chrX	-	1032	4	FSM	ENSMUSG00000025040.14	ENSMUST00000177213.8	1032	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTATGGCTGATTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	17437880	17423762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_17424251_17424919_17425049_17434271_17434348_17437541
ENSMUST00000177236.8	chr7	-	1674	6	FSM	ENSMUSG00000030788.17	ENSMUST00000177236.8	4032	6	65	2293	10	-241	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTTTCTTCCCATTTCT	NA	NA	NA	NA	NA	NA	NA	NA	110443599	110415030	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_110416058_110420460_110420569_110424423_110424606_110432943_110433053_110436283_110436478_110443545
ENSMUST00000177258.2	chr5	+	1368	2	FSM	ENSMUSG00000053178.6	ENSMUST00000177258.2	1368	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTATTTTGTATGTATT	NA	NA	NA	NA	NA	NA	NA	NA	4242366	4247651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_4242419_4246335
ENSMUST00000177275.2	chr16	+	358	2	ISM	ENSMUSG00000025616.15	ENST00000399975.7	2930	18	27889	206	27872	-12	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAACTATAAATTATGTTC	NA	NA	NA	NA	NA	NA	NA	NA	87279738	87280186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_87279905_87279994
ENSMUST00000177275.2-0	chr16	+	240	2	ISM	ENSMUSG00000025616.15	ENST00000399975.7	2930	18	27889	324	27872	-130	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTACTGAACTCACAAGC	NA	NA	NA	NA	NA	NA	NA	NA	87279738	87280068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_87279905_87279994
ENSMUST00000177308.2	chr3	-	492	1	FSM	ENSMUSG00000093402.2	ENSMUST00000177308.2	492	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAATAGCAATCTGTAGCA	NA	NA	NA	NA	NA	NA	NA	NA	68810091	68809599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_68809600_68810100
ENSMUST00000177323.8	chr16	-	915	3	FSM	ENSMUSG00000005983.16	ENSMUST00000177323.8	915	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCTTGTTTGTTTGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	3725566	3723661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_3724165_3724704_3725059_3725508
ENSMUST00000177363.2	chr3	-	3215	1	FSM	ENSMUSG00000093656.2	ENSMUST00000177363.2	3215	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCCCCGTCTGAGATTT	NA	NA	NA	NA	NA	NA	NA	NA	96177605	96174390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_96174400_96177600
ENSMUST00000177408.2	chr4	-	689	5	FSM	ENSMUSG00000073705.11	ENSMUST00000177408.2	689	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCAATCAGCTGTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	149222026	149212996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216734_149216840_149221932
ENSMUST00000177467.8	chr2	-	744	7	FSM	ENSMUSG00000039826.14	ENSMUST00000177467.8	744	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGCGGAACTGCAAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	29677634	29667768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_29667969_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ENSMUST00000177501.2	chr1	+	1636	3	FSM	ENSMUSG00000025940.7	ENSMUST00000177501.2	1636	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCCAGTATGTGTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	16735430	16748419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_16735730_16737888_16737998_16747191
ENSMUST00000177501.2-0	chr1	+	1332	3	FSM	ENSMUSG00000025940.7	ENSMUST00000177501.2	1636	3	29	275	26	-275	multi-exon	FALSE	canonical	NA	NA	NA	NA	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTTGAATTCATAGAAATC	NA	NA	NA	NA	NA	NA	NA	NA	16735459	16748144	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_16735730_16737888_16737998_16747191
ENSMUST00000177533.2	chr11	+	308	3	FSM	ENSMUSG00000093483.2	ENSMUST00000177533.2	308	3	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGTATTTGTTTGGGTA	NA	NA	NA	NA	NA	NA	NA	NA	83182567	83185455	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_83182660_83182792_83182894_83185340
ENSMUST00000177570.2	chr6	+	1104	3	FSM	ENSMUSG00000042079.14	ENSMUST00000180020.8	2280	3	9	1167	9	-1165	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGCCTATAGTGCAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	117894263	117901415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_117894560_117896059_117896121_117900668
ENSMUST00000177586.3	chr17	+	375	1	FSM	ENSMUSG00000096361.3	ENSMUST00000177586.3	375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGAGCCGGCCGCGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	47721287	47721662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_47721300_47721700
ENSMUST00000177587.9	chr12	+	820	4	FSM	ENSMUSG00000034271.17	ENSMUST00000177587.9	1645	4	147	678	19	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCCCACTCCAGGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	85645947	85685974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_85646002_85654906_85655140_85678418_85678524_85685546
ENSMUST00000177667.2	chr19	+	1243	5	FSM	ENSMUSG00000025226.12	ENSMUST00000177667.2	1243	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCGTGGTGCATAGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	46316625	46318884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_46316741_46316841_46316966_46317113_46317268_46317526_46318033_46318540
ENSMUST00000177671.8	chrY	+	708	5	FSM	ENSMUSG00000096768.9	ENSMUST00000177671.8	708	5	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCAGATGTGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	90796769	90827733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrY_+_90797028_90797032_90797234_90797237_90797249_90804564_90804687_90827617
ENSMUST00000177710.2	chrX	+	1516	10	FSM	ENSMUSG00000031105.17	ENSMUST00000177710.2	1516	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATTTTGACTTTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	47712838	47751169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_47713084_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
ENSMUST00000177752.9	chr19	-	664	6	FSM	ENSMUSG00000056629.17	ENSMUST00000177752.9	664	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	6957869	6955111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956510_6957761
ENSMUST00000177767.3	chr10	-	1941	1	FSM	ENSMUSG00000093798.3	ENSMUST00000177767.3	1941	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	420	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGTCCAAGAAGAAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	14623046	14621105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_14621100_14623000
ENSMUST00000177768.3	chr12	+	3353	5	FSM	ENSMUSG00000095595.3	ENSMUST00000177768.3	3922	5	0	569	0	-569	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAATGGTGCTACTCTGAT	NA	NA	NA	NA	NA	NA	NA	NA	55171253	55188320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_55171508_55177400_55177575_55182452_55182520_55183902_55184001_55185560
ENSMUST00000177778.9	chr12	+	2542	4	FSM	ENSMUSG00000073197.10	ENSMUST00000177778.9	2542	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	18564510	18585255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_18564937_18581610_18581738_18581935_18581997_18583327
ENSMUST00000177837.8	chr4	-	1325	9	FSM	ENSMUSG00000028218.20	ENSMUST00000177837.8	1325	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACATAGTCTTTCTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	12172015	12153722	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_12153979_12155648_12155769_12157650_12157765_12164087_12164193_12164268_12164275_12168222_12168325_12168964_12169034_12170983_12171219_12171697
ENSMUST00000177850.8	chr10	+	708	6	NIC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	2	-48	combination_of_known_junctions	TRUE	non_canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGTCTACACTCTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	80662516	80664791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_+_80662740_80664076_80664129_80664129_80664217_80664294_80664468_80664544_80664631_80664704
ENSMUST00000177856.8	chr16	+	1878	18	FSM	ENSMUSG00000075704.18	ENSMUST00000177856.8	1878	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCATGTCTGCGTGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	18245187	18297817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18270720_18270728_18273225_18273331_18274773_18274949_18287499_18287637_18290903_18291000_18291543_18291637_18293431_18293504_18294271_18294370_18296400_18296608_18297607
ENSMUST00000177881.3	chr5	+	973	1	FSM	ENSMUSG00000095078.3	ENSMUST00000177881.3	973	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCCTTGACCACGCCACT	NA	NA	NA	NA	NA	NA	NA	NA	52739415	52740388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_52739400_52740400
ENSMUST00000177896.8	chr12	+	2350	7	FSM	ENSMUSG00000079179.10	ENSMUST00000177896.8	2872	7	389	133	0	-133	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTTGAAAGGCTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	3285914	3300244	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_3287413_3287590_3287661_3288028_3288113_3288833_3289010_3291521_3291579_3297351_3297439_3299866
ENSMUST00000177919.8	chr1	-	639	5	ISM	ENSMUSG00000052331.15	ENST00000328737.6	3241	25	26109	90587	26109	-25658	internal_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACAGTGGCCTAACTGCC	NA	NA	NA	NA	NA	NA	NA	NA	54805582	54782457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_54782588_54792048_54792128_54801419_54801633_54802803_54802947_54805508
ENSMUST00000177948.2	chr13	+	2329	8	FSM	ENSMUSG00000021388.15	ENSMUST00000177948.2	2329	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAAATGTGTGCTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	49697918	49721033	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_49698194_49705133_49705393_49707395_49707509_49710722_49710937_49712266_49712378_49716916_49717011_49717231_49717371_49719909
ENSMUST00000177951.8	chr4	+	2787	15	FSM	ENSMUSG00000057280.16	ENSMUST00000177951.8	3352	15	0	565	0	-50	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGAGGCTCTTTTCAGACT	NA	NA	NA	NA	NA	NA	NA	NA	58285961	58373737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_58286191_58293491_58293619_58296607_58296760_58301601_58301730_58303844_58303987_58327325_58327356_58333564_58333690_58344151_58344312_58347852_58347860_58353943_58354208_58355680_58355857_58366797_58366997_58367396_58367589_58368872_58369022_58373030
ENSMUST00000177978.3	chr12	+	3863	5	FSM	ENSMUSG00000094103.3	ENSMUST00000177978.3	3863	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	334	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTGCAGAGTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	55246376	55263953	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_55246572_55252464_55252639_55257516_55257584_55258966_55259065_55260624
ENSMUST00000178019.3	chr13	+	1246	1	FSM	ENSMUSG00000114951.2	ENSMUST00000178019.3	1246	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTAACTACTCAGAAACAC	NA	NA	NA	NA	NA	NA	NA	NA	120423779	120425025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_120423800_120425000
ENSMUST00000178026.2	chr10	+	1218	6	FSM	ENSMUSG00000053219.16	ENSMUST00000178026.2	1218	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	22049817	22250038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22249675
ENSMUST00000178078.8	chr7	-	723	4	FSM	ENSMUSG00000035642.17	ENSMUST00000178078.8	723	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCATTAGCGATCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	97224860	97199537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97224794
ENSMUST00000178098.8	chr3	-	4434	7	FSM	ENSMUSG00000027708.15	ENSMUST00000178098.8	4434	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTTTTATTGCTTCCAT	NA	NA	NA	NA	NA	NA	NA	NA	35986483	35946253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119_35975337_35986341
ENSMUST00000178135.3	chr10	-	75	1	FSM	ENSMUSG00000094955.3	ENSMUST00000178135.3	75	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCTGCCGGTGCACCCA	NA	NA	NA	NA	NA	NA	NA	NA	43332497	43332422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_43332400_43332500
ENSMUST00000178147.3	chrX	-	651	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1930	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	151693151	151692500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_151692500_151693200
ENSMUST00000178163.8	chr7	-	934	14	FSM	ENSMUSG00000064179.14	ENSMUST00000178163.8	934	14	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTTCTTCAGGGTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	4518974	4507661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513388_4513434_4513446_4516579_4516613_4516809_4516837_4517211_4517226_4517335_4517379_4518929
ENSMUST00000178171.3	chr5	+	1233	1	FSM	ENSMUSG00000094090.3	ENSMUST00000178171.3	1233	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTTGCCTTGTTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	146511697	146512930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_146511700_146512900
ENSMUST00000178235.8	chr1	-	1756	11	FSM	ENSMUSG00000006299.14	ENSMUST00000178235.8	1756	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCAGTGTCTGTGTGCAT	NA	NA	NA	NA	NA	NA	NA	NA	74323839	74319004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323204_74323661
ENSMUST00000178241.4	chr6	+	1317	2	FSM	ENSMUSG00000048489.13	ENSMUST00000178241.4	1317	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGCAATTTTGTTACTG	NA	NA	NA	NA	NA	NA	NA	NA	116627588	116629755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_116627807_116628656
ENSMUST00000178254.2	chr11	-	724	3	NNC	ENSMUSG00000018293.5	novel	861	3	NA	NA	-23	-89	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	4025	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAAAATTTTTGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	70545447	70542764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_70543048_70543612_70543781_70545174
ENSMUST00000178289.3	chr13	+	746	2	FSM	ENSMUSG00000039182.7	ENSMUST00000178289.3	2035	2	0	1289	0	-1289	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCATCGGTCGAAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	14804738	14811499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_14804870_14810884
ENSMUST00000178310.9	chr19	+	378	5	FSM	ENSMUSG00000038274.14	ENSMUST00000178310.9	613	5	107	128	0	-95	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGCGAATGCAGTACAAC	NA	NA	NA	NA	NA	NA	NA	NA	6107980	6109421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_6108032_6108272_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000178324.2	chr8	-	1989	15	FSM	ENSMUSG00000031478.17	ENSMUST00000178324.2	1989	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACCGTGTGTGCTGGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	22652510	22618301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_22618807_22619360_22619485_22621221_22621354_22622065_22622216_22623008_22623112_22632905_22632956_22636946_22637020_22638498_22638700_22639876_22639932_22646991_22647079_22647165_22647234_22648642_22648727_22650207_22650306_22650385_22650474_22652339
ENSMUST00000178328.8	chr3	-	1698	7	FSM	ENSMUSG00000019528.19	ENSMUST00000178328.8	1698	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTTGGTTGTTTAAGTA	NA	NA	NA	NA	NA	NA	NA	NA	20209260	20176250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_20177029_20179421_20179642_20192180_20192308_20204702_20204866_20205116_20205292_20206893_20207030_20209161
ENSMUST00000178348.2	chr9	+	672	4	FSM	ENSMUSG00000096385.8	ENSMUST00000178348.2	672	4	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTCCATGTCCTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	3004456	3005194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_3004523_3004526_3005010_3005069_3005073_3005074
ENSMUST00000178377.3	chr19	-	654	1	FSM	ENSMUSG00000095690.3	ENSMUST00000178377.3	654	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCCCTGCACTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	7376442	7375788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_7375800_7376400
ENSMUST00000178384.2	chr12	-	1284	2	FSM	ENSMUSG00000096458.8	ENSMUST00000178384.2	1284	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGACCCAAGGCTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	102709920	102708488	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_102709654_102709801
ENSMUST00000178385.9	chr7	-	1538	7	FSM	ENSMUSG00000030629.16	ENSMUST00000178385.9	1538	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	84328600	84264261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84328517
ENSMUST00000178399.3	chr14	-	1865	10	FSM	ENSMUSG00000022221.15	ENSMUST00000178399.3	1865	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGTCTGAGGTGTCAA	NA	NA	NA	NA	NA	NA	NA	NA	56026314	56022453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_56022809_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694_56025822_56026073
ENSMUST00000178421.8	chr13	-	1414	10	FSM	ENSMUSG00000021417.16	ENSMUST00000178421.8	1414	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTTAAGAATTCATGTT	NA	NA	NA	NA	NA	NA	NA	NA	35178127	35161732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177996
ENSMUST00000178473.8	chr4	+	735	4	FSM	ENSMUSG00000073684.14	ENSMUST00000178473.8	1076	4	37	304	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTCAGCCTGACAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	155334459	155340840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_155334520_155334962_155335108_155335212_155335494_155340591
ENSMUST00000178557.2	chr1	+	483	1	FSM	ENSMUSG00000094497.2	ENSMUST00000178557.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGACTCCTGCCAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	43228315	43228798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_43228300_43228800
ENSMUST00000178598.3	chr6	-	843	1	FSM	ENSMUSG00000096403.3	ENSMUST00000178598.3	843	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	298	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCAGGGACATTGATTCG	NA	NA	NA	NA	NA	NA	NA	NA	7983383	7982540	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_7982500_7983400
ENSMUST00000178615.8	chr19	-	1018	3	FSM	ENSMUSG00000094936.9	ENSMUST00000178615.8	1018	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTATGTGTGCTTTGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	4843879	4835180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4835596_4842425_4842849_4843699
ENSMUST00000178627.8	chr1	+	739	10	FSM	ENSMUSG00000034343.15	ENSMUST00000178627.8	1363	10	46	578	0	-293	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCAGCCCCTTGGGATTG	NA	NA	NA	NA	NA	NA	NA	NA	91178086	91213169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_91178160_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUST00000178632.8	chrX	+	933	3	FSM	ENSMUSG00000046432.13	ENSMUST00000178632.8	933	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTGAAATTCAACAGTATT	NA	NA	NA	NA	NA	NA	NA	NA	135171001	135172727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_135171151_135171558_135171632_135172016
ENSMUST00000178632.8-0	chrX	+	720	3	FSM	ENSMUSG00000046432.13	ENSMUST00000178632.8	933	3	52	161	0	-103	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGAGATTGCCTTCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	135171053	135172566	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_135171151_135171558_135171632_135172016
ENSMUST00000178641.2	chr9	+	672	4	FSM	ENSMUSG00000096736.2	ENSMUST00000178641.2	672	4	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTCCATGTCCTACAGT	NA	NA	NA	NA	NA	NA	NA	NA	3034598	3035805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_3034665_3034668_3035152_3035680_3035684_3035685
ENSMUST00000178662.8	chr1	+	518	5	ISM	ENSMUSG00000026269.15	ENSMUST00000027487.15	3337	11	6022	1929	6022	-1929	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGCTGAGCCAGACCTGT	NA	NA	NA	NA	NA	NA	NA	NA	92844526	92846634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_92844669_92844868_92844983_92845355_92845469_92845739_92845849_92846594
ENSMUST00000178704.8	chr11	-	2018	15	FSM	ENSMUSG00000020182.17	ENSMUST00000178704.8	2018	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	11848144	11764100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11848011
ENSMUST00000178707.3	chr10	+	561	1	FSM	ENSMUSG00000095478.3	ENSMUST00000178707.3	561	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	311	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGGTGCTGCACAGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	28906123	28906684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_28906100_28906700
ENSMUST00000178721.2	chr8	+	1108	9	FSM	ENSMUSG00000031505.12	ENSMUST00000178721.2	1108	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	11547583	11563287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11562894
ENSMUST00000178774.3	chr17	-	498	5	FSM	ENSMUSG00000052146.17	ENSMUST00000178774.3	498	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGAGTTTATGTTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	27853449	27849438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299
ENSMUST00000178797.8	chr16	+	4177	8	FSM	ENSMUSG00000022885.17	ENSMUST00000178797.8	4177	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCTTCTCTTTATACTT	NA	NA	NA	NA	NA	NA	NA	NA	23044770	23179100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_23044930_23075708_23075852_23136313_23136449_23139782_23140429_23147091_23147190_23173615_23173715_23174958_23175134_23176378
ENSMUST00000178830.3	chr13	-	1246	1	FSM	ENSMUSG00000114940.2	ENSMUST00000178830.3	1246	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTAACTACTCAGAAACAC	NA	NA	NA	NA	NA	NA	NA	NA	120561868	120560622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_120560600_120561900
ENSMUST00000178854.8	chr1	+	1076	15	FSM	ENSMUSG00000026414.14	ENSMUST00000178854.8	1076	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATGGAATAGTGTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	135768612	135779998	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_135768651_135769638_135769650_135769752_135769765_135773292_135773383_135773635_135773672_135774459_135774494_135775446_135775511_135775718_135775836_135776548_135776627_135777087_135777199_135778116_135778126_135778448_135778559_135779089_135779181_135779433_135779475_135779764
ENSMUST00000178855.8	chr11	-	779	4	FSM	ENSMUSG00000078974.11	ENSMUST00000178855.8	779	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTATCAAATTTTAGTAA	NA	NA	NA	NA	NA	NA	NA	NA	16458484	16451637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458078
ENSMUST00000178876.10	chr7	+	361	3	FSM	ENSMUSG00000054676.18	ENSMUST00000178876.10	3282	3	195	2726	0	-130	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGGACAGACGCAGTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	37883272	37894266	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_37883325_37888030_37888202_37894128
ENSMUST00000178905.2	chr1	-	767	7	NNC	ENSMUSG00000052331.15	novel	2401	17	NA	NA	-20911	-44727	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCAACAACAGTGGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	54852602	54801526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_-_54801633_54802803_54802947_54805508_54805597_54805942_54806144_54817445_54817517_54831611_54831691_54852523
ENSMUST00000178948.2	chr13	+	1648	2	FSM	ENSMUSG00000074634.13	ENSMUST00000178948.2	1648	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTGTTTCTTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	120068185	120071994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_120068567_120070727
ENSMUST00000178993.3	chr3	+	331	1	FSM	ENSMUSG00000096544.3	ENSMUST00000178993.3	331	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1008	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GACAGCAAAAGGAAAAATAA	NA	NA	NA	NA	NA	NA	NA	NA	124179315	124179646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_124179300_124179600
ENSMUST00000178997.8	chr2	+	3463	18	FSM	ENSMUSG00000027469.17	ENSMUST00000178997.8	4161	18	31	667	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCTCTTGTTGTCCTAG	NA	NA	NA	NA	NA	NA	NA	NA	152689914	152736574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_152690030_152696840_152696923_152709106_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ENSMUST00000179054.8	chr10	-	2081	2	FSM	ENSMUSG00000097327.8	ENSMUST00000179054.8	2081	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAGAAAAATGCTTACCA	NA	NA	NA	NA	NA	NA	NA	NA	22025169	21988948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_21990248_22024387
ENSMUST00000179114.8	chr11	+	1264	5	FSM	ENSMUSG00000020817.17	ENSMUST00000179114.8	1264	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGCCCTCCTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	70735617	70784947	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_70735835_70765571_70765701_70775590_70775795_70777836_70777998_70784394
ENSMUST00000179139.3	chr12	+	1502	2	FSM	ENSMUSG00000096199.3	ENSMUST00000179139.3	3840	2	0	2338	0	-2338	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTTCCTCAGAAGCTTCG	NA	NA	NA	NA	NA	NA	NA	NA	4284026	4287612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_4284279_4286362
ENSMUST00000179165.9	chr15	+	4325	7	FSM	ENSMUSG00000022297.16	ENSMUST00000179165.9	4325	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATTGTATTGTGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	38869428	38901583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_38869828_38870619_38870959_38889060_38889258_38894209_38895228_38897244_38897394_38898202_38898623_38899780
ENSMUST00000179172.8	chr10	+	744	6	FSM	ENSMUSG00000035242.16	ENSMUST00000179172.8	744	6	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGCCCTGCCCAGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	80662526	80664839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80662740_80664070_80664129_80664129_80664217_80664294_80664468_80664552_80664631_80664704
ENSMUST00000179225.3	chr18	-	379	1	FSM	ENSMUSG00000094111.3	ENSMUST00000179225.3	379	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACCTCCTCCTGGCCACA	NA	NA	NA	NA	NA	NA	NA	NA	10483465	10483086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_10483100_10483500
ENSMUST00000179233.2	chr8	-	1423	9	FSM	ENSMUSG00000008892.13	ENSMUST00000179233.2	1423	9	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	1046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTTAGTAGTGGTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	23083829	23067090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077565_23077619_23078741_23078811_23083699
ENSMUST00000179238.8	chr10	+	1945	15	FSM	ENSMUSG00000004207.15	ENSMUST00000179238.8	2657	15	0	712	0	-709	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCCCTTTCTGCTCGAAG	NA	NA	NA	NA	NA	NA	NA	NA	60113449	60137664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60133316_60133326_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
ENSMUST00000179290.8	chr4	-	1721	2	FSM	ENSMUSG00000045268.14	ENSMUST00000179290.8	1721	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTGTGTACTTATTTGG	NA	NA	NA	NA	NA	NA	NA	NA	119031053	119026712	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_119028240_119030859
ENSMUST00000179341.2	chr10	+	520	3	NNC	ENSMUSG00000035242.16	novel	916	5	NA	NA	1898	-5	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	80664426	80665119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_+_80664468_80664544_80664631_80664726
ENSMUST00000179353.8	chr1	+	3219	13	FSM	ENSMUSG00000116048.2	ENSMUST00000179353.8	3219	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	93406714	93437455	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_93406791_93416849_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ENSMUST00000179363.2	chr12	+	916	2	FSM	ENSMUSG00000096753.8	ENSMUST00000179363.2	1406	2	0	490	0	-141	multi-exon	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCGCCTGTGGATCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	103281217	103282834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_103281330_103282030
ENSMUST00000179364.3	chr8	-	587	2	FSM	ENSMUSG00000094500.3	ENSMUST00000179364.3	587	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACCAGTCTACTTAATAC	NA	NA	NA	NA	NA	NA	NA	NA	34237798	34232139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_34232654_34237725
ENSMUST00000179418.9	chr17	-	481	5	FSM	ENSMUSG00000024309.16	ENSMUST00000179418.9	481	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCCTACTTTACAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	34159284	34157896	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997_34159080_34159270
ENSMUST00000179421.9	chr8	-	773	4	FSM	ENSMUSG00000031736.12	ENSMUST00000179421.9	773	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTTGTTTGTGTAATGG	NA	NA	NA	NA	NA	NA	NA	NA	93082459	93052660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_93053091_93073597_93073733_93077318_93077383_93082315
ENSMUST00000179488.3	chr14	-	754	3	FSM	ENSMUSG00000096001.3	ENSMUST00000179488.3	754	3	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGAGCATCCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	36832058	36824098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_36824649_36829330_36829412_36831935
ENSMUST00000179556.2	chr7	+	3114	2	FSM	ENSMUSG00000045252.12	ENSMUST00000179556.2	4140	2	79	947	0	65	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACTTCTGGCTGCATTC	NA	NA	NA	NA	NA	NA	NA	NA	24776708	24781970	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_24776812_24778959
ENSMUST00000179569.3	chr17	+	601	5	FSM	ENSMUSG00000096255.3	ENSMUST00000179569.3	771	5	0	170	0	-170	multi-exon	TRUE	canonical	NA	NA	NA	NA	638	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCACCTGTCATCTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	6697510	6703525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295
ENSMUST00000179668.2	chr13	-	78	1	FSM	ENSMUSG00000096842.2	ENSMUST00000179668.2	78	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCCCGTGCACCTACGA	NA	NA	NA	NA	NA	NA	NA	NA	111730145	111730067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_111730100_111730100
ENSMUST00000179718.2	chr1	+	483	1	FSM	ENSMUSG00000096712.2	ENSMUST00000179718.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGACTCCTGCCAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	134445818	134446301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_134445800_134446300
ENSMUST00000179748.8	chr2	+	1590	10	FSM	ENSMUSG00000025817.13	ENSMUST00000179748.8	1590	10	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAAGACTTGGGGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	5849844	5873547	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869259_5871042_5871053_5871164_5871219_5872899
ENSMUST00000179765.8	chr11	-	2485	11	FSM	ENSMUSG00000018537.17	ENSMUST00000179765.8	2485	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGTGGTTCTTTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	97590210	97579648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97588814_97588887_97590031
ENSMUST00000179781.8	chr10	+	1261	7	FSM	ENSMUSG00000023175.16	ENSMUST00000179781.8	1261	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	79540324	79547803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
ENSMUST00000179855.2	chr11	-	436	4	NNC	ENSMUSG00000017561.17	novel	2230	7	NA	NA	77	-12819	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACATAGTGAAAGACCACA	NA	NA	NA	NA	NA	NA	NA	NA	79971687	79950137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_79950204_79950923_79951012_79955017_79955226_79971613
ENSMUST00000179928.2	chr17	+	597	4	FSM	ENSMUSG00000023904.11	ENSMUST00000179928.2	597	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAAGGGAAAATGTTACC	NA	NA	NA	NA	NA	NA	NA	NA	23892600	23894148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_23892678_23892942_23893043_23893520_23893650_23893857
ENSMUST00000179990.8	chr10	+	566	4	FSM	ENSMUSG00000020022.18	ENSMUST00000179990.8	566	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGTCTTGTGCGTTCA	NA	NA	NA	NA	NA	NA	NA	NA	94034865	94056810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_94034993_94035811_94035895_94039149_94039238_94056542
ENSMUST00000179993.2	chr1	+	518	3	NNC	ENSMUSG00000026269.15	novel	3337	11	NA	NA	426	-4908	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGACCTCAAGCCAGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	92838930	92843655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_+_92839206_92842780_92842922_92843553
ENSMUST00000179998.8	chr17	-	2456	7	FSM	ENSMUSG00000025730.15	ENSMUST00000179998.8	2456	7	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTGTCTGGCTTCATCT	NA	NA	NA	NA	NA	NA	NA	NA	26138616	26101087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26138338_26138524_26138563
ENSMUST00000180008.2	chr19	-	370	2	FSM	ENSMUSG00000006456.11	ENSMUST00000180008.2	370	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGATTACCGCCGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	4861540	4851804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4851834_4861199
ENSMUST00000180021.2	chr9	+	702	5	FSM	ENSMUSG00000039217.14	ENSMUST00000180021.2	702	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCATGTGTCCAGCCCAATT	NA	NA	NA	NA	NA	NA	NA	NA	50486572	50493137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_50486649_50487993_50488006_50489060_50489193_50490586_50490721_50492789
ENSMUST00000180025.8	chrX	+	2812	5	FSM	ENSMUSG00000072964.15	ENSMUST00000180025.8	2812	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTGTGTTTGTGTATA	NA	NA	NA	NA	NA	NA	NA	NA	134786599	134791827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_134786837_134787593_134787676_134788009_134788067_134789120_134789229_134789499
ENSMUST00000180036.8	chr10	+	1044	6	FSM	ENSMUSG00000035242.16	ENSMUST00000180036.8	1044	6	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	80662519	80665124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80662740_80664070_80664129_80664129_80664217_80664294_80664468_80664544_80664631_80664704
ENSMUST00000180043.8	chr17	+	1447	7	FSM	ENSMUSG00000040482.17	ENSMUST00000180043.8	1447	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTGCTGTGTCTGAATG	NA	NA	NA	NA	NA	NA	NA	NA	35055994	35058162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35056193_35056368_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
ENSMUST00000180067.2	chr8	-	1077	1	FSM	ENSMUSG00000094568.2	ENSMUST00000180067.2	1077	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	283	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGCCTTGTTTTATGTG	NA	NA	NA	NA	NA	NA	NA	NA	42111706	42110629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_42110600_42111700
ENSMUST00000180072.8	chr11	-	486	5	FSM	ENSMUSG00000034566.11	ENSMUST00000180072.8	486	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCCTGGGACGGAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	115309333	115306573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211
ENSMUST00000180088.2	chr11	+	1921	9	FSM	ENSMUSG00000034412.14	ENSMUST00000180088.2	1921	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGCTGTGTATAGTTAG	NA	NA	NA	NA	NA	NA	NA	NA	4136821	4165502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_4137100_4155756_4155857_4159925_4160034_4162140_4162248_4162784_4162900_4162977_4163044_4163556_4163747_4163836_4163992_4164700
ENSMUST00000180140.8	chr17	+	693	4	FSM	ENSMUSG00000023904.11	ENSMUST00000180140.8	693	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	23892569	23894201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_23892678_23892942_23893043_23893508_23893650_23893857
ENSMUST00000180154.8	chr9	+	1900	8	FSM	ENSMUSG00000032372.15	ENSMUST00000180154.8	1900	8	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTTTAGAAAATAACATTAA	NA	NA	NA	NA	NA	NA	NA	NA	92157654	92179805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_92158072_92164164_92164246_92169624_92169858_92171715_92171759_92172691_92172913_92173029_92173192_92177567_92177730_92179224
ENSMUST00000180159.8	chr15	+	362	4	FSM	ENSMUSG00000045996.13	ENSMUST00000180159.8	489	4	23	104	0	-104	multi-exon	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTATTTTAATACTTTG	NA	NA	NA	NA	NA	NA	NA	NA	36174178	36177049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_36174228_36175132_36175203_36175529_36175623_36176899
ENSMUST00000180233.4	chr9	+	422	4	ISM	ENSMUSG00000093803.6	ENSMUST00000239563.2	4016	11	2102	4928	2102	-4928	internal_fragment	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTGGTGGGGGCGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	124197928	124199831	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_124198032_124198703_124198779_124199151_124199239_124199674
ENSMUST00000180255.2	chr4	+	345	1	FSM	ENSMUSG00000094344.2	ENSMUST00000180255.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCTTTTGTTAAGTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	32964887	32965232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_32964900_32965200
ENSMUST00000180322.2	chrX	-	1080	1	FSM	ENSMUSG00000051224.14	ENSMUST00000180322.2	1080	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTAAATAATCCTTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	165286393	165285313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_165285300_165286400
ENSMUST00000180341.2	chr6	+	1922	1	FSM	ENSMUSG00000042079.14	ENSMUST00000180341.2	1922	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	744	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCACAGCTTATGTACTC	NA	NA	NA	NA	NA	NA	NA	NA	117900661	117902583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_117900700_117902600
ENSMUST00000180387.3	chr7	+	1051	3	FSM	ENSMUSG00000097789.3	ENSMUST00000180387.3	7055	3	0	6004	0	-6004	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTTCAGGGGGCTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	84178161	84226735	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_84178398_84224912_84225050_84226057
ENSMUST00000180396.2	chr13	+	1073	3	FSM	ENSMUSG00000097346.2	ENSMUST00000180396.2	1073	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTGTGTGTTCAGATTC	NA	NA	NA	NA	NA	NA	NA	NA	97887619	97897473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_97887661_97887919_97888078_97896599
ENSMUST00000180432.9	chr15	+	1563	9	FSM	ENSMUSG00000097039.9	ENSMUST00000180432.9	1563	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTATTGAAGTCATGATT	NA	NA	NA	NA	NA	NA	NA	NA	61909895	62121373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_61910051_61978996_61979315_62021087_62021202_62031845_62031978_62047315_62047398_62114022_62114151_62114282_62114411_62116567_62116707_62121006
ENSMUST00000180443.3	chr11	+	1235	3	FSM	ENSMUSG00000097887.3	ENSMUST00000180443.3	1235	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTGAGTGTTGTACC	NA	NA	NA	NA	NA	NA	NA	NA	50127838	50179666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_50128207_50175242_50175422_50178978
ENSMUST00000180539.2	chr8	-	351	3	ISM	ENSMUSG00000052934.15	ENSMUST00000059018.14	4358	9	18718	6802	18718	-6802	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTCCAGGCCGCTGCGG	NA	NA	NA	NA	NA	NA	NA	NA	122286827	122282980	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_122283091_122285758_122285834_122286661
ENSMUST00000180544.3	chr19	-	2568	4	FSM	ENSMUSG00000074733.15	ENSMUST00000180544.3	2568	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGTGTGTCTTTGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	61129200	61106568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_61108891_61115444_61115506_61115875_61116003_61129142
ENSMUST00000180576.3	chr12	-	604	5	FSM	ENSMUSG00000097788.3	ENSMUST00000180576.3	604	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCACACTCCTGGAACAGA	NA	NA	NA	NA	NA	NA	NA	NA	108521877	108503602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_108503783_108505512_108505566_108505656_108505730_108506839_108506898_108521637
ENSMUST00000180598.3	chr1	+	1973	4	FSM	ENSMUSG00000097316.3	ENSMUST00000180598.3	2615	4	0	642	0	-642	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTTCTGGGCTTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	191821195	191834681	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_191821362_191828733_191828837_191829513_191829748_191833211
ENSMUST00000180638.3	chr1	+	1135	3	FSM	ENSMUSG00000097503.3	ENSMUST00000180638.3	1135	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACGTTCCATTCCTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	169796977	169799965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_169797145_169798018_169798372_169799350
ENSMUST00000180654.2	chr11	-	1002	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCCTGGACCACCCACC	NA	NA	NA	NA	NA	NA	NA	NA	20286013	20285011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_20285000_20286000
ENSMUST00000180726.2	chr10	-	1630	2	FSM	ENSMUSG00000097327.8	ENSMUST00000179054.8	2081	2	451	0	451	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAGAAAAATGCTTACCA	NA	NA	NA	NA	NA	NA	NA	NA	22024718	21988948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_21990248_22024387
ENSMUST00000180728.2	chr13	+	633	2	FSM	ENSMUSG00000097373.2	ENSMUST00000180728.2	633	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGCTTTGGTTCATGGT	NA	NA	NA	NA	NA	NA	NA	NA	41513446	41524384	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_41513607_41523911
ENSMUST00000180733.2	chr5	-	1740	4	FSM	ENSMUSG00000097191.3	ENSMUST00000180733.2	1740	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTGAGATGTGCATGTG	NA	NA	NA	NA	NA	NA	NA	NA	149120873	149056374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_149056640_149064183_149065592_149118804_149118846_149120847
ENSMUST00000180755.2	chr5	+	1002	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCCTGGACCACCCACC	NA	NA	NA	NA	NA	NA	NA	NA	96009572	96010574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_96009600_96010600
ENSMUST00000180765.2	chr19	-	1073	6	FSM	ENSMUSG00000037349.10	ENSMUST00000180765.2	1073	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTAGCTTCTGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	6973485	6970385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6972138_6972609_6973104_6973382
ENSMUST00000180879.8	chr7	+	600	4	FSM	ENSMUSG00000097277.8	ENSMUST00000180879.8	725	4	47	78	47	-78	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATGCTTGAAGTTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	81173365	81181164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_81173425_81178534_81178689_81179094_81179276_81180958
ENSMUST00000180923.2	chr16	-	737	2	FSM	ENSMUSG00000097318.3	ENSMUST00000180923.2	737	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTGGAATTCTCTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	33201097	33200224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_33200750_33200885
ENSMUST00000180933.3	chr7	-	2310	3	FSM	ENSMUSG00000097343.3	ENSMUST00000180933.3	2310	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGGTTGGCCCAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	120276743	120272658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_120274500_120275630_120275880_120276523
ENSMUST00000180940.2	chr13	+	627	1	FSM	ENSMUSG00000060198.8	ENSMUST00000180940.2	627	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2079	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATGCGTAGTGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	26676536	26677163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_26676500_26677200
ENSMUST00000180967.3	chr16	-	1580	2	FSM	ENSMUSG00000097768.3	ENSMUST00000180967.3	1580	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACACCTTTAAATAATA	NA	NA	NA	NA	NA	NA	NA	NA	93591789	93589023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_93590271_93591456
ENSMUST00000181026.2	chr8	+	438	2	ISM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	4930	0	4862	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	NA	NA	NA	NA	NA	NA	NA	121399890	121400946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_121400092_121400709
ENSMUST00000181034.3	chr15	-	881	2	FSM	ENSMUSG00000097093.3	ENSMUST00000181034.3	881	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTGTGGTATTTACATT	NA	NA	NA	NA	NA	NA	NA	NA	100512991	100512017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_100512572_100512664
ENSMUST00000181039.8	chr10	-	1108	7	FSM	ENSMUSG00000020216.14	ENSMUST00000181039.8	1108	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATCATCTACTCCTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	80649326	80644331	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_80644874_80644979_80645063_80646009_80646199_80646297_80646401_80647900_80647939_80648128_80648252_80649296
ENSMUST00000181055.2	chr12	+	2098	3	FSM	ENSMUSG00000097381.3	ENSMUST00000181055.2	2098	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACTGATTCTACATTTC	NA	NA	NA	NA	NA	NA	NA	NA	111251217	111260422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_111251739_111258547_111258639_111258936
ENSMUST00000181091.8	chr10	-	1876	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181091.8	1876	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	NA	NA	NA	NA	NA	NA	NA	93725637	93696790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715436_93715934_93716001_93722855_93722964_93725399
ENSMUST00000181106.3	chr9	+	2151	2	FSM	ENSMUSG00000097467.3	ENSMUST00000181106.3	2151	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTTTTTTTTCTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	44024219	44033257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_44024533_44031419
ENSMUST00000181108.2	chr14	-	552	1	FSM	ENSMUSG00000057886.6	ENSMUST00000181108.2	552	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTGCATTTATATATAT	NA	NA	NA	NA	NA	NA	NA	NA	74192991	74192439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_74192400_74193000
ENSMUST00000181173.2	chr14	+	1304	4	FSM	ENSMUSG00000097148.3	ENSMUST00000181173.2	1712	4	0	408	0	-408	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGGCCCACTGAAGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	11113046	11188630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_11113278_11121504_11121695_11122853_11122898_11187791
ENSMUST00000181181.2	chr8	-	1229	1	FSM	ENSMUSG00000078967.6	ENSMUST00000181181.2	1229	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	497	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAATAAAATA	NA	NA	NA	NA	NA	NA	NA	NA	93443603	93442374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_93442400_93443600
ENSMUST00000181214.4	chr9	+	2363	3	FSM	ENSMUSG00000074415.15	ENSMUST00000181214.4	3876	3	355	1158	0	-221	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTCTTCATTTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	41491273	41502967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_41491495_41492008_41492699_41501515
ENSMUST00000181217.8	chr10	-	1984	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181217.8	1984	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	NA	NA	NA	NA	NA	NA	NA	93725646	93696790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715535_93715934_93716001_93722855_93722964_93725399
ENSMUST00000181224.2	chr7	-	656	3	FSM	ENSMUSG00000097415.3	ENSMUST00000181224.2	656	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGAGGTGTTGTGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	75431847	75419509	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_75419986_75430372_75430505_75431799
ENSMUST00000181233.2	chr12	+	438	1	FSM	ENSMUSG00000096942.2	ENSMUST00000181233.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	110864547	110864985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_110864500_110865000
ENSMUST00000181259.8	chr17	-	1256	5	FSM	ENSMUSG00000073437.11	ENSMUST00000181259.8	1256	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACTGGGAGGGAGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	24633487	24628454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_24629146_24629231_24629328_24630898_24631058_24631440_24631549_24633285
ENSMUST00000181337.2	chr8	+	1105	2	FSM	ENSMUSG00000097308.2	ENSMUST00000181337.2	1105	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCATCTCTTTTGATTATT	NA	NA	NA	NA	NA	NA	NA	NA	4728461	4738494	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_4728567_4737494
ENSMUST00000181379.2	chr5	+	342	2	ISM	ENSMUSG00000037210.17	ENSMUST00000094867.8	3696	17	39792	9999	39792	-9999	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGACCTGGACAGTGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	34623472	34633092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_34623792_34633069
ENSMUST00000181423.2	chr3	-	219	1	FSM	ENSMUSG00000097790.2	ENSMUST00000181423.2	219	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATTTCAGAATGCAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	14867634	14867415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_14867400_14867600
ENSMUST00000181462.2	chr9	-	2505	2	FSM	ENSMUSG00000097445.2	ENSMUST00000181462.2	2505	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	57444912	57438569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_57440869_57444706
ENSMUST00000181484.2	chr17	+	1174	3	FSM	ENSMUSG00000096965.8	ENSMUST00000181484.2	1174	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	716	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTCTCCAGACCTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	5849765	5853515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_5850269_5851473_5851617_5852987
ENSMUST00000181524.8	chr1	+	413	3	FSM	ENSMUSG00000097113.8	ENSMUST00000181524.8	413	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTGCTTTGTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	136611133	136618542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_136611212_136616481_136616549_136618274
ENSMUST00000181584.2	chr17	-	441	1	FSM	ENSMUSG00000068120.5	ENSMUST00000181584.2	441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	427	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTGTCTCCACTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	5866915	5866474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_5866500_5866900
ENSMUST00000181586.8	chr8	+	765	5	FSM	ENSMUSG00000031818.13	ENSMUST00000181586.8	765	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	NA	NA	NA	NA	NA	NA	NA	121394960	121400946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_121395115_121396047_121396122_121399463_121399632_121399959_121400092_121400709
ENSMUST00000181617.2	chr9	+	1528	2	FSM	ENSMUSG00000097205.2	ENSMUST00000181617.2	1528	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTGTTGTTGTTGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	40442450	40444916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_40442535_40443472
ENSMUST00000181646.2	chr10	-	1137	1	FSM	ENSMUSG00000044268.5	ENSMUST00000181646.2	1137	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACATTGACATAAGTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	22030315	22029178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_22029200_22030300
ENSMUST00000181750.2	chr16	-	289	3	ISM	ENSMUSG00000022664.12	ENST00000492406.6	1414	7	44	10465	44	-8415	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTCACTCTGTGTTAT	NA	NA	NA	NA	NA	NA	NA	NA	44978816	44972967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_44973039_44977823_44977970_44978744
ENSMUST00000181756.3	chr1	-	842	4	FSM	ENSMUSG00000097899.3	ENSMUST00000181756.3	842	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGGCGGTGGTGGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	40125011	40115387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_40115799_40124126_40124175_40124303_40124448_40124772
ENSMUST00000181795.2	chr8	+	476	5	NNC	ENSMUSG00000031818.13	novel	745	5	NA	NA	18	-78	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGACATGAAGGCCAACCC	NA	NA	NA	NA	NA	NA	NA	NA	121395046	121400771	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_+_121395091_121396047_121396122_121399467_121399632_121399959_121400092_121400709
ENSMUST00000181800.2	chr13	+	777	5	FSM	ENSMUSG00000085457.4	ENSMUST00000181800.2	777	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCTCTTATGCTTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	34120014	34144164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_34120081_34137299_34137525_34138689_34138809_34142583_34142642_34143855
ENSMUST00000181802.2	chr15	+	2489	1	FSM	ENSMUSG00000097150.2	ENSMUST00000181802.2	2489	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCACCAATGGATTAAATTAA	NA	NA	NA	NA	NA	NA	NA	NA	97991163	97993652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_97991200_97993700
ENSMUST00000181860.8	chr3	-	1194	8	FSM	ENSMUSG00000027556.16	ENSMUST00000181860.8	1194	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTTTATTGTGCATTTA	NA	NA	NA	NA	NA	NA	NA	NA	14873425	14831275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_14831713_14832463_14832620_14835230_14835294_14835867_14835964_14841277_14841397_14842788_14842987_14843407_14843469_14873361
ENSMUST00000181873.8	chr5	-	626	5	FSM	ENSMUSG00000097772.8	ENSMUST00000181873.8	626	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTAGAATGTTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	100577394	100568700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_100568832_100569826_100569901_100574594_100574664_100576955_100577098_100577184
ENSMUST00000181921.2	chr19	-	1642	3	FSM	ENSMUSG00000097785.3	ENSMUST00000181921.2	1642	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTGCTTCTGTCTAGT	NA	NA	NA	NA	NA	NA	NA	NA	57349207	57311816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_57312495_57313027_57313230_57348445
ENSMUST00000181935.2	chr15	-	378	1	FSM	ENSMUSG00000067870.6	ENSMUST00000181935.2	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTCGTGTCAAATAAAG	NA	NA	NA	NA	NA	NA	NA	NA	90648859	90648481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_90648500_90648900
ENSMUST00000181948.2	chr8	+	687	4	FSM	ENSMUSG00000031812.17	ENSMUST00000181948.2	766	4	-7	86	0	-69	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACTCAGCTTGGAAACTC	NA	NA	NA	NA	NA	NA	NA	NA	122317215	122323665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_122317304_122320228_122320390_122322724_122322832_122323334
ENSMUST00000181967.3	chr9	+	572	3	FSM	ENSMUSG00000097651.3	ENSMUST00000181967.3	843	3	0	271	0	-271	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTCAGTATGATCGCATC	NA	NA	NA	NA	NA	NA	NA	NA	58362404	58376647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_58362640_58374083_58374201_58376427
ENSMUST00000181969.8	chr14	+	2532	8	FSM	ENSMUSG00000053253.17	ENSMUST00000181969.8	2532	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGTATTTCTTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	105496007	105546732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545319
ENSMUST00000181969.8-0	chr14	+	2158	8	FSM	ENSMUSG00000053253.17	ENSMUST00000181969.8	2532	8	245	129	245	-129	multi-exon	FALSE	canonical	NA	NA	NA	NA	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAACATTTAACATAG	NA	NA	NA	NA	NA	NA	NA	NA	105496252	105546603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545319
ENSMUST00000182017.2	chr7	-	453	1	FSM	ENSMUSG00000069972.7	ENSMUST00000182017.2	453	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGCTGTTGTGTGCACA	NA	NA	NA	NA	NA	NA	NA	NA	88180106	88179653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_88179700_88180100
ENSMUST00000182042.2	chr14	-	1420	8	FSM	ENSMUSG00000058690.15	ENSMUST00000182042.2	1420	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAAGTCCTTGCAGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	36641492	36601315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_36601720_36612298_36612384_36618211_36618302_36620120_36620208_36622718_36622803_36630973_36631170_36640390_36640554_36641181
ENSMUST00000182183.8	chr10	+	838	7	FSM	ENSMUSG00000020056.17	ENSMUST00000182183.8	838	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATGGTTTGTTGACCAA	NA	NA	NA	NA	NA	NA	NA	NA	88037013	88081868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055114_88055223_88070255_88070321_88081617
ENSMUST00000182183.8-0	chr10	+	1049	7	FSM	ENSMUSG00000020056.17	ENSMUST00000182183.8	838	7	-59	-152	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGAATGTGTCTTAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	88036954	88082020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055114_88055223_88070255_88070321_88081617
ENSMUST00000182209.8	chr17	+	1977	5	FSM	ENSMUSG00000034165.17	ENSMUST00000182209.8	1977	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	47904394	47910614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ENSMUST00000182209.8-0	chr17	+	1382	5	FSM	ENSMUSG00000034165.17	ENSMUST00000182209.8	1977	5	0	595	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCAACCTTCTCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	47904394	47910019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ENSMUST00000182209.8-1	chr17	+	1428	5	FSM	ENSMUSG00000034165.17	ENSMUST00000182209.8	1977	5	59	490	-12	105	multi-exon	FALSE	canonical	NA	NA	NA	NA	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGGCCTCTGTGTAATC	NA	NA	NA	NA	NA	NA	NA	NA	47904453	47910124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ENSMUST00000182229.8	chr7	+	732	4	FSM	ENSMUSG00000046056.16	ENSMUST00000182229.8	732	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGGCTCACTGTGCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	30450895	30455559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_30451341_30454233_30454306_30454426_30454472_30455389
ENSMUST00000182230.3	chr17	-	707	1	FSM	ENSMUSG00000091515.6	ENSMUST00000182230.3	707	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGTAGAGGAGAAAGCCGC	NA	NA	NA	NA	NA	NA	NA	NA	33524719	33524012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_33524000_33524700
ENSMUST00000182232.9	chr9	-	826	6	FSM	ENSMUSG00000097195.11	ENSMUST00000182232.9	826	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	88405027	88403102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404640_88404903
ENSMUST00000182247.2	chr14	-	780	1	FSM	ENSMUSG00000058581.8	ENSMUST00000182247.2	780	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTCACAAGCCACAGCCTA	NA	NA	NA	NA	NA	NA	NA	NA	56248772	56247992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_56248000_56248800
ENSMUST00000182328.8	chr7	-	1391	7	FSM	ENSMUSG00000030591.18	ENSMUST00000182328.8	1391	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	28879977	28873612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
ENSMUST00000182402.8	chr17	+	1275	10	FSM	ENSMUSG00000098090.9	ENSMUST00000182402.8	1275	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGGGTGTCCCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	95057527	95082557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
ENSMUST00000182433.8	chr5	-	1195	7	NNC	ENSMUSG00000035325.17	novel	4047	26	NA	NA	34628	-1	at_least_one_novel_splicesite	TRUE	canonical	NA	NA	NA	NA	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAGTTAGTCTTTATTTA	NA	NA	NA	NA	NA	NA	NA	NA	100521343	100509508	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100517454_100517494_100521283
ENSMUST00000182551.2	chr8	+	464	1	FSM	ENSMUSG00000098221.2	ENSMUST00000182551.2	464	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCGCCTTGTTTAGAAATA	NA	NA	NA	NA	NA	NA	NA	NA	122380792	122381256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_122380800_122381300
ENSMUST00000182602.2	chr5	-	733	3	FSM	ENSMUSG00000029551.14	ENSMUST00000182602.2	733	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGGCCTTCTCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	139812598	139809367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_139809829_139811882_139812120_139812563
ENSMUST00000182617.2	chr9	-	1868	16	ISM	ENSMUSG00000050730.18	ENSMUST00000093893.12	6116	23	0	16909	0	-14282	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGGACTCCCTTGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	9239106	9011238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_9011443_9015300_9015360_9016144_9016230_9016964_9017040_9018204_9018268_9029423_9029464_9030794_9030874_9033471_9033582_9035509_9035611_9046505_9046636_9048888_9048994_9059049_9059161_9115690_9115763_9155303_9155366_9180027_9180124_9238630
ENSMUST00000182677.8	chr10	+	1425	8	FSM	ENSMUSG00000078452.11	ENSMUST00000182677.8	1425	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	22236450	22250038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_22236551_22237474_22237545_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
ENSMUST00000182706.8	chr2	-	2525	15	FSM	ENSMUSG00000002107.19	ENSMUST00000182706.8	2525	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	7086053	6549651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_6550487_6551852_6552025_6554642_6554787_6558595_6558776_6565481_6565602_6590784_6590920_6604844_6604909_6608834_6608994_6612692_6612773_6620498_6620634_6629481_6629531_6668925_6669009_6726227_6726425_6967189_6967226_7085917
ENSMUST00000182709.8	chr5	+	1703	8	FSM	ENSMUSG00000029110.14	ENSMUST00000182709.8	3046	8	39	1304	39	-1289	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTACCCATGCTCCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	34493671	34509479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
ENSMUST00000182709.8-1	chr5	+	1684	8	FSM	ENSMUSG00000029110.14	ENSMUST00000182709.8	3046	8	157	1205	66	-1190	multi-exon	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGTCTACAGTGCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	34493789	34509578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
ENSMUST00000182751.2	chr6	-	1441	1	FSM	ENSMUSG00000079575.4	ENSMUST00000182751.2	1441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTACCGTCTTTTTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	46507728	46506287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_46506300_46507700
ENSMUST00000182757.2	chr15	-	1012	1	FSM	ENSMUSG00000098002.2	ENSMUST00000182757.2	1012	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACCCATACCATCCACTG	NA	NA	NA	NA	NA	NA	NA	NA	43081557	43080545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_43080500_43081600
ENSMUST00000182821.8	chr19	+	794	3	FSM	ENSMUSG00000033760.18	ENSMUST00000182821.8	1443	3	38	611	10	-611	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGCTGCAGCTTCCGCAT	NA	NA	NA	NA	NA	NA	NA	NA	4806608	4812293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_4806690_4807273_4807698_4812004
ENSMUST00000182863.2	chr8	-	375	2	FSM	ENSMUSG00000098120.2	ENSMUST00000182863.2	375	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTTCTTCTTCTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	106363982	106350967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_106351108_106363747
ENSMUST00000182869.2	chr12	+	2031	4	FSM	ENSMUSG00000090812.9	ENSMUST00000182869.2	2031	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGCAGTTCAGAGTACTG	NA	NA	NA	NA	NA	NA	NA	NA	87247316	87260315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_87248811_87249811_87249911_87255473_87255723_87260126
ENSMUST00000182873.2	chr19	-	802	3	NNC	ENSMUSG00000042694.18	novel	2036	9	NA	NA	27584	-5	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAATTCATTTCCTTAT	NA	NA	NA	NA	NA	NA	NA	NA	47497212	47489476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_47490157_47496244_47496318_47497163
ENSMUST00000182877.8	chr19	-	2475	19	NNC	ENSMUSG00000025027.19	novel	2956	20	NA	NA	11849	1	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	332	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGCTTTGTCTGCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	53008727	52979612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53008416
ENSMUST00000182879.8	chr2	-	2223	12	FSM	ENSMUSG00000002107.19	ENSMUST00000182879.8	2223	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	6726426	6549651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_6550487_6551852_6552025_6558595_6558776_6565469_6565602_6590784_6590920_6604844_6604909_6608834_6608994_6612692_6612773_6620498_6620634_6629481_6629531_6668925_6669009_6726227
ENSMUST00000182935.8	chr17	+	338	3	ISM	ENSMUSG00000034165.17	ENSMUST00000171031.8	2113	7	28	5990	28	-5401	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGCCGGGCCCGACCCGCG	NA	NA	NA	NA	NA	NA	NA	NA	47816003	47904618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_47816192_47889633_47889699_47904533
ENSMUST00000182980.8	chr8	+	2080	11	FSM	ENSMUSG00000002342.18	ENSMUST00000182980.8	2080	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCCTTACCATGGTG	NA	NA	NA	NA	NA	NA	NA	NA	70625057	70635500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_70625091_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
ENSMUST00000183037.3	chr10	+	735	6	FSM	ENSMUSG00000075706.12	ENSMUST00000183037.3	735	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTCACCCTGGCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	79890298	79892228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
ENSMUST00000183037.3-0	chr10	+	613	6	FSM	ENSMUSG00000075706.12	ENSMUST00000183037.3	735	6	0	122	0	-122	multi-exon	FALSE	canonical	NA	NA	NA	NA	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTTCCACCCCGGCACT	NA	NA	NA	NA	NA	NA	NA	NA	79890298	79892106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
ENSMUST00000183090.2	chr7	+	399	1	FSM	ENSMUSG00000078087.6	ENSMUST00000183090.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATTTTGGCTGAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	55663763	55664162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_55663800_55664200
ENSMUST00000183130.3	chr15	-	2458	2	FSM	ENSMUSG00000098176.3	ENSMUST00000183130.3	2458	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCGTTGTCTTGTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	75854291	75851720	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_75853537_75853649
ENSMUST00000183146.2	chr12	+	1383	1	FSM	ENSMUSG00000098134.2	ENSMUST00000183146.2	1383	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCCTGGTGTGATCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	84463969	84465352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_84464000_84465400
ENSMUST00000183177.8	chr17	+	1563	7	FSM	ENSMUSG00000034165.17	ENSMUST00000183177.8	2060	7	7	490	7	105	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGGCCTCTGTGTAATC	NA	NA	NA	NA	NA	NA	NA	NA	47816080	47910124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_47816212_47889633_47889718_47904533_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ENSMUST00000183182.2	chr9	-	1458	4	FSM	ENSMUSG00000050730.18	ENSMUST00000183182.2	1458	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGACTGTCAATTGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	9239031	9147356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_9148256_9155303_9155366_9180027_9180124_9238630
ENSMUST00000183196.2	chr19	-	435	1	FSM	ENSMUSG00000063754.8	ENSMUST00000183196.2	435	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1145	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGACATCCCATGCACGG	NA	NA	NA	NA	NA	NA	NA	NA	28981242	28980807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_28980800_28981200
ENSMUST00000183232.2	chr2	+	432	1	FSM	ENSMUSG00000025201.8	ENSMUST00000183232.2	432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCGTGTTCATGTGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	52509765	52510197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_52509800_52510200
ENSMUST00000183235.2	chr8	-	2489	3	FSM	ENSMUSG00000097960.2	ENSMUST00000183235.2	2489	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAGAGAAAAAAGCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	120954969	120931172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_120933225_120951263_120951395_120954663
ENSMUST00000183309.8	chr10	-	1296	10	FSM	ENSMUSG00000038510.13	ENSMUST00000183309.8	1296	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATGTCACAGTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	40123032	40099422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
ENSMUST00000183345.2	chr4	+	3545	5	FSM	ENSMUSG00000055963.13	ENSMUST00000183345.2	3545	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGAATTTAGCATTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	12906857	12983553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_12906939_12917915_12918066_12962944_12963024_12974729_12974816_12980404
ENSMUST00000183363.2	chr10	-	406	3	FSM	ENSMUSG00000063320.12	ENSMUST00000183363.2	406	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTAGGGGGCTCAATGGC	NA	NA	NA	NA	NA	NA	NA	NA	82459024	82455859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_82456052_82458541_82458659_82458927
ENSMUST00000183423.2	chr9	+	1017	2	FSM	ENSMUSG00000099148.2	ENSMUST00000183423.2	1017	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATTGCTGTTATTGTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	32725029	32745400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_32725156_32744509
ENSMUST00000183511.2	chr9	+	775	1	FSM	ENSMUSG00000079225.4	ENSMUST00000183511.2	775	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	460	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTGATGAAGAAGGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	81559664	81560439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_81559700_81560400
ENSMUST00000183537.2	chrX	-	801	1	FSM	ENSMUSG00000098559.3	ENSMUST00000183537.2	801	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGACATGCTGGAAAAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	138615230	138614429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_138614400_138615200
ENSMUST00000183538.8	chr2	+	1343	7	FSM	ENSMUSG00000026811.19	ENST00000291839.10	1973	7	3	627	3	262	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGTATAGGGGTCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	32497054	32509803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_32497124_32498053_32498109_32499237_32499329_32502235_32502416_32504792_32505181_32508508_32508617_32509351
ENSMUST00000183748.2	chr9	-	313	1	FSM	ENSMUSG00000066478.4	ENSMUST00000183748.2	313	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGAACCCACCCCCAATAA	NA	NA	NA	NA	NA	NA	NA	NA	73083023	73082710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_73082700_73083000
ENSMUST00000183867.7	chr6	+	678	2	FSM	ENSMUSG00000098318.8	ENSMUST00000183867.7	5662	2	63	4921	22	302	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTCCTGTCAGCTGGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	134906117	134928840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_134906224_134928268
ENSMUST00000183918.8	chr9	-	4308	14	FSM	ENSMUSG00000032228.17	ENSMUST00000183918.8	4308	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAACTAGTGAGTTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	71803678	71751554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_71753843_71757053_71757208_71763586_71763820_71765765_71765929_71766121_71766237_71775353_71775561_71776280_71776353_71777355_71777430_71783270_71783350_71789998_71790064_71790388_71790534_71790937_71791078_71792464_71792571_71803211
ENSMUST00000183946.8	chr2	-	768	5	FSM	ENSMUSG00000044627.12	ENSMUST00000183946.8	768	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	32178080	32168827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32177897
ENSMUST00000184126.3	chr9	+	279	2	FSM	ENSMUSG00000098332.3	ENSMUST00000184126.3	496	2	12	205	12	-205	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCAGCCAATATTTGAACA	NA	NA	NA	NA	NA	NA	NA	NA	72947011	72949856	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_72947148_72949713
ENSMUST00000184162.2	chr4	+	621	4	ISM	ENSMUSG00000028919.12	ENSMUST00000006618.9	3414	17	4057	9588	4057	-8890	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCGAGCAGCTCTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	140974236	140975287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_140974542_140974688_140974798_140974864_140974942_140975157
ENSMUST00000184247.2	chr9	+	613	1	FSM	ENSMUSG00000098915.2	ENSMUST00000184247.2	613	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACACATGATATTTGTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	71968218	71968831	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_71968200_71968800
ENSMUST00000184326.8	chr9	-	2077	18	FSM	ENSMUSG00000035047.10	ENSMUST00000184326.8	2490	18	181	232	181	-232	multi-exon	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGCAGCCTACGAAAGCTA	NA	NA	NA	NA	NA	NA	NA	NA	21199068	21185163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_21185545_21186564_21186664_21186732_21186798_21187139_21187271_21187350_21187478_21187680_21187770_21187855_21187932_21190656_21190828_21191459_21191556_21191658_21191786_21192337_21192466_21192957_21193036_21193110_21193208_21193344_21193395_21193469_21193525_21196536_21196664_21197874_21197981_21198994
ENSMUST00000184422.2	chr5	+	1222	3	ISM	ENSMUSG00000070498.4	ENST00000299308.7	3603	9	1	90981	1	-90981	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGCCATGAAGGAACTTC	NA	NA	NA	NA	NA	NA	NA	NA	125699551	125775837	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_125700417_125715245_125715393_125775627
ENSMUST00000184554.8	chr7	-	782	5	FSM	ENSMUSG00000101970.9	ENSMUST00000184554.8	782	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCAGTTTGGGCCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	73207992	73193783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_73194159_73199344_73199401_73205002_73205082_73205602_73205669_73207786
ENSMUST00000184762.2	chr8	+	1524	1	FSM	ENSMUSG00000097882.3	ENSMUST00000184762.2	1524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGCGATCTGCTAAAAATA	NA	NA	NA	NA	NA	NA	NA	NA	78243684	78245208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_78243700_78245200
ENSMUST00000184831.8	chr9	-	1652	11	FSM	ENSMUSG00000090626.10	ENSMUST00000184831.8	1652	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGATGTTGGAAGACAAAG	NA	NA	NA	NA	NA	NA	NA	NA	72399494	72368356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_72368561_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387205_72387284_72387878_72388058_72391350_72391397_72394061_72394142_72395293_72395358_72399020
ENSMUST00000184887.2	chr9	+	2107	7	FSM	ENSMUSG00000032035.17	ENSMUST00000184887.2	2107	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTCAGGCTTTGGACT	NA	NA	NA	NA	NA	NA	NA	NA	32607416	32666571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_32607762_32639970_32640091_32641350_32641552_32644244_32644323_32645235_32645485_32649394_32649446_32665508
ENSMUST00000184913.8	chr4	-	773	8	NNC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	165	-10877	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCCGATTGGGAAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	155845385	155835974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_155836050_155838023_155838094_155838338_155838505_155839213_155839310_155840135_155840196_155840517_155840620_155841548_155841626_155845258
ENSMUST00000185036.2	chr4	-	1223	3	FSM	ENSMUSG00000078570.11	ENSMUST00000185036.2	1223	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTGACTGACCTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	124744989	124743282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_124743756_124744024_124744227_124744441
ENSMUST00000185257.7	chr9	-	785	5	NNC	ENSMUSG00000040813.17	novel	1391	6	NA	NA	-4	-296	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAGAGGGGTGAGGAGTA	NA	NA	NA	NA	NA	NA	NA	NA	106563118	106536246	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_-_106536507_106539558_106539728_106550715_106550938_106562145_106562195_106563033
ENSMUST00000185334.7	chr9	-	1109	7	FSM	ENSMUSG00000042210.18	ENSMUST00000185334.7	1109	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTGTATTTCATTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	106324642	106317308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323029_106324587
ENSMUST00000185362.7	chr1	+	445	4	FSM	ENSMUSG00000018196.19	ENSMUST00000185362.7	3337	4	89	2803	28	-178	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCAGTGTTATTTAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	143615383	143622336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_143615497_143617385_143617450_143620784_143620962_143622245
ENSMUST00000185393.7	chr1	-	822	3	ISM	ENSMUSG00000079658.10	ENSMUST00000115352.10	960	4	9003	119	8845	-119	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAATAATTACATGGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	16718263	16713109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_16713703_16715909_16716054_16718178
ENSMUST00000185445.3	chr1	-	418	3	NNC	ENSMUSG00000026425.16	novel	3075	10	NA	NA	10772	-67458	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTATATGGAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	131441970	131339537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_-_131339701_131364412_131364606_131441908
ENSMUST00000185486.3	chr12	-	1189	1	FSM	ENSMUSG00000100975.3	ENSMUST00000185486.3	1189	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTGTGTGGTTTCGAGT	NA	NA	NA	NA	NA	NA	NA	NA	104892948	104891759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_104891800_104892900
ENSMUST00000185492.7	chrX	+	591	3	FSM	ENSMUSG00000086316.9	ENSMUST00000185492.7	1346	3	17	738	0	-80	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGATCCTGCAGAAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	152506622	152524178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_152506934_152508700_152508838_152524035
ENSMUST00000185641.7	chr15	-	731	5	FSM	ENSMUSG00000062683.12	ENSMUST00000185641.7	731	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	102579562	102571298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_102571564_102573488_102573683_102574197_102574291_102576145_102576215_102579452
ENSMUST00000185675.7	chr9	-	3375	5	FSM	ENSMUSG00000032252.15	ENSMUST00000185675.7	4850	5	16	1459	16	-1459	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAATACATATGTAAACTA	NA	NA	NA	NA	NA	NA	NA	NA	62029876	61965988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_61968318_61975666_61975913_61977296_61977896_61995710_61995802_62029766
ENSMUST00000185681.2	chr3	-	382	2	FSM	ENSMUSG00000054426.12	ENSMUST00000185681.2	625	2	243	0	65	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTTGGCTATGGTG	NA	NA	NA	NA	NA	NA	NA	NA	115681536	115675229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_115675488_115681412
ENSMUST00000185715.7	chr2	+	944	9	ISM	ENSMUSG00000002102.16	ENSMUST00000067663.14	1636	12	269	1587	178	-1587	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACTCAAGTGAAGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	90884622	90888190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109
ENSMUST00000185761.2	chr1	-	359	4	FSM	ENSMUSG00000101549.2	ENSMUST00000185761.2	359	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAATAATTTATTGGACCA	NA	NA	NA	NA	NA	NA	NA	NA	132208149	132202453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_132202560_132202761_132202875_132207119_132207222_132208111
ENSMUST00000185771.7	chr1	-	742	5	FSM	ENSMUSG00000079658.10	ENSMUST00000185771.7	742	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAGCTGTAAAGCTAATT	NA	NA	NA	NA	NA	NA	NA	NA	16727138	16713414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16726519_16726684_16727045
ENSMUST00000185797.7	chr1	-	2510	15	FSM	ENSMUSG00000026209.16	ENSMUST00000185797.7	2510	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGGTTTGAAATGGATTG	NA	NA	NA	NA	NA	NA	NA	NA	75294303	75284539	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293978
ENSMUST00000185861.7	chr15	+	1223	5	FSM	ENSMUSG00000022587.15	ENSMUST00000185861.7	838	5	74	-459	74	-145	multi-exon	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCAGGAGGCTGCCCATGG	NA	NA	NA	NA	NA	NA	NA	NA	74827108	74831035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_74827185_74827331_74827567_74829628_74829727_74830117_74830238_74830341
ENSMUST00000185945.2	chr1	-	570	4	NNC	ENSMUSG00000026484.14	novel	1106	6	NA	NA	4504	-197	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCTTTTAAAAGTCAATT	NA	NA	NA	NA	NA	NA	NA	NA	151349870	151347069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_-_151347169_151347388_151347561_151348822_151349096_151349844
ENSMUST00000185960.2	chr9	-	754	3	FSM	ENSMUSG00000056031.14	ENSMUST00000185960.2	2557	3	1419	384	381	-384	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGTACCAGAAACCAAACT	NA	NA	NA	NA	NA	NA	NA	NA	85724957	85702738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_85703092_85705017_85705179_85724717
ENSMUST00000186001.2	chr1	+	298	4	ISM	ENSMUSG00000026280.18	ENSMUST00000027502.16	4173	13	13172	15429	13172	-15429	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAATGCTTTCCTCGACA	NA	NA	NA	NA	NA	NA	NA	NA	93695798	93702903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_93695877_93695974_93696047_93701491_93701591_93702854
ENSMUST00000186008.7	chr1	-	978	4	ISM	ENSMUSG00000026341.17	ENSMUST00000178474.8	2565	12	37935	578	37764	-578	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCCAACGGTTCTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	125325349	125321220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188
ENSMUST00000186050.2	chr1	-	552	3	ISM	ENSMUSG00000026234.13	ENST00000678364.1	2160	12	7937	-16	7905	16	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	224	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	NA	NA	NA	NA	NA	NA	NA	86279215	86278217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_86278419_86278533_86278758_86279088
ENSMUST00000186115.2	chr1	+	639	1	FSM	ENSMUSG00000100228.2	ENSMUST00000186115.2	639	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATGCGTAGTGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	132953538	132954177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_132953500_132954200
ENSMUST00000186131.7	chr14	-	1005	4	FSM	ENSMUSG00000021917.17	ENSMUST00000186131.7	1005	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACATTTGTTTTCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	30723623	30721783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_30722180_30722634_30722722_30722800_30722861_30723161
ENSMUST00000186182.2	chr7	-	1512	7	FSM	ENSMUSG00000030591.18	ENSMUST00000186182.2	1512	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	28880098	28873612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
ENSMUST00000186207.7	chr7	+	3178	11	FSM	ENSMUSG00000030811.15	ENSMUST00000186207.7	3178	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCTCCAGTTTGGCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	127344372	127368099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_127344505_127347421_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350199_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
ENSMUST00000186232.2	chr9	+	379	1	FSM	ENSMUSG00000101209.2	ENSMUST00000186232.2	379	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGAGTCCACTATGAGGG	NA	NA	NA	NA	NA	NA	NA	NA	96787559	96787938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_96787600_96787900
ENSMUST00000186239.7	chr10	-	2255	12	FSM	ENSMUSG00000019813.17	ENSMUST00000186239.7	2255	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	41685609	41594836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41657479_41657547_41685568
ENSMUST00000186255.7	chr1	+	535	4	FSM	ENSMUSG00000026238.15	ENSMUST00000186255.7	768	4	71	162	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACCAGAACTTCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	86454528	86457931	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_86454673_86456894_86456967_86457452_86457527_86457686
ENSMUST00000186364.2	chr9	+	1471	9	FSM	ENSMUSG00000032369.14	ENSMUST00000186364.2	1471	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAGAGTTGATGTTACT	NA	NA	NA	NA	NA	NA	NA	NA	92132394	92154028	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_92132478_92140100_92140128_92141326_92141408_92145085_92145331_92146698_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
ENSMUST00000186415.7	chr1	-	1106	6	FSM	ENSMUSG00000026484.14	ENSMUST00000186415.7	1106	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCCCACTCCCTCCATAG	NA	NA	NA	NA	NA	NA	NA	NA	151376584	151346872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_151347169_151347388_151347561_151348822_151349096_151352622_151352784_151354287_151354377_151376469
ENSMUST00000186444.2	chr1	-	1381	2	FSM	ENSMUSG00000100594.2	ENSMUST00000186444.2	1381	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCTTTTGGTCATGGT	NA	NA	NA	NA	NA	NA	NA	NA	151630769	151624699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_151625980_151630668
ENSMUST00000186450.2	chr9	-	554	3	FSM	ENSMUSG00000100130.2	ENSMUST00000186450.2	554	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTTAGTGAAACAGGGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	66355778	66325584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_66325878_66355339_66355437_66355614
ENSMUST00000186507.2	chr1	-	951	1	FSM	ENSMUSG00000100309.2	ENSMUST00000186507.2	951	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	334	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGGCGAGCGGATCCC	NA	NA	NA	NA	NA	NA	NA	NA	55484183	55483232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_55483200_55484200
ENSMUST00000186591.7	chr9	-	734	3	NNC	ENSMUSG00000032475.16	novel	4476	4	NA	NA	12	-2574	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAACTCAATTTTGAGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	100428175	100379629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_-_100380024_100390481_100390726_100428079
ENSMUST00000186693.2	chr9	+	595	3	FSM	ENSMUSG00000035048.14	ENSMUST00000186693.2	595	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCCCACTTGGTTTTCGT	NA	NA	NA	NA	NA	NA	NA	NA	102503877	102511441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_102504118_102506961_102507088_102511212
ENSMUST00000186764.7	chr1	-	3640	9	FSM	ENSMUSG00000002881.15	ENSMUST00000186764.7	3640	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGCTTAGAGTGCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	52539459	52496452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_52498466_52501246_52501364_52503943_52504104_52506048_52506139_52518396_52518449_52520029_52520164_52529079_52529915_52539008_52539157_52539368
ENSMUST00000186870.7	chr3	-	1174	3	FSM	ENSMUSG00000078784.9	ENSMUST00000186870.7	1174	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	NA	NA	NA	NA	NA	NA	NA	14676321	14671348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_14672354_14674600_14674718_14676269
ENSMUST00000186913.2	chr11	+	401	2	ISM	ENSMUSG00000078572.4	ENSMUST00000106223.4	781	3	171	291	155	51	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATAAGGAACTGGTCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	119989924	119991240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_119990085_119990999
ENSMUST00000187098.2	chr1	-	248	4	NNC	ENSMUSG00000026260.13	novel	729	7	NA	NA	7092	-12215	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTCATCAGGGTAGCCG	NA	NA	NA	NA	NA	NA	NA	NA	92390711	92379774	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_-_92379842_92388101_92388188_92390012_92390068_92390671
ENSMUST00000187109.2	chr1	-	241	1	FSM	ENSMUSG00000100551.2	ENSMUST00000187109.2	241	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTCATGCCAGCTGGTACA	NA	NA	NA	NA	NA	NA	NA	NA	151396438	151396197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_151396200_151396400
ENSMUST00000187117.2	chr1	-	492	1	FSM	ENSMUSG00000101249.2	ENSMUST00000187117.2	492	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGGAAGGAATCGAACCC	NA	NA	NA	NA	NA	NA	NA	NA	24655278	24654786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_24654800_24655300
ENSMUST00000187178.2	chr19	+	916	1	FSM	ENSMUSG00000099998.2	ENSMUST00000187178.2	916	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTTGTCTGGAATAAC	NA	NA	NA	NA	NA	NA	NA	NA	11098873	11099789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_11098900_11099800
ENSMUST00000187229.2	chr9	-	391	1	FSM	ENSMUSG00000101464.2	ENSMUST00000187229.2	391	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGGGGTCTGATGC	NA	NA	NA	NA	NA	NA	NA	NA	105423026	105422635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_105422600_105423000
ENSMUST00000187241.2	chr5	+	1581	4	FSM	ENSMUSG00000066613.15	ENSMUST00000187241.2	1581	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATGTGGTAAAGCCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	110154481	110157884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_110154488_110154809_110154937_110155121_110155183_110156497
ENSMUST00000187248.2	chr9	-	286	1	FSM	ENSMUSG00000099444.2	ENSMUST00000187248.2	286	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAATCCTCTTCTTTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	97116153	97115867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_97115900_97116200
ENSMUST00000187303.3	chr9	-	640	1	FSM	ENSMUSG00000101597.3	ENSMUST00000187303.3	640	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAGGCTTCAATAGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	105437960	105437320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_105437300_105438000
ENSMUST00000187347.7	chr15	-	522	4	FSM	ENSMUSG00000079018.11	ENSMUST00000187347.7	522	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATATGTTATAGAAGGTC	NA	NA	NA	NA	NA	NA	NA	NA	74920637	74917172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_74917460_74919201_74919319_74920290_74920374_74920602
ENSMUST00000187504.7	chr19	+	1336	6	FSM	ENSMUSG00000096740.9	ENSMUST00000187504.7	3164	6	0	1828	0	-1828	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGACACTTCAGAAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	8861095	8868163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_8861444_8861519_8861680_8864398_8864615_8866487_8866613_8867366_8867465_8867774
ENSMUST00000187542.7	chr6	+	782	4	FSM	ENSMUSG00000101191.7	ENSMUST00000187542.7	782	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTCAAAAAAAAAAACAAAA	NA	NA	NA	NA	NA	NA	NA	NA	125458325	125461641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_125458438_125459526_125459666_125460403_125460533_125461239
ENSMUST00000187550.7	chr15	-	698	5	FSM	ENSMUSG00000033029.13	ENSMUST00000187550.7	1168	5	133	337	133	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGTCCTAGTCACTGCC	NA	NA	NA	NA	NA	NA	NA	NA	79025254	79019191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_79019423_79019552_79019654_79019836_79019966_79023437_79023501_79025080
ENSMUST00000187656.7	chr13	-	2310	4	FSM	ENSMUSG00000094942.8	ENSMUST00000187656.7	2310	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	NA	NA	NA	NA	NA	NA	NA	NA	62530991	62516141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_62518166_62519376_62519438_62519623_62519751_62530893
ENSMUST00000187973.2	chrX	-	582	1	FSM	ENSMUSG00000095597.3	ENSMUST00000187973.2	582	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	732	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAGAAAATGACTGAATAA	NA	NA	NA	NA	NA	NA	NA	NA	151693116	151692534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_151692500_151693100
ENSMUST00000188039.2	chr7	-	1516	1	FSM	ENSMUSG00000101906.2	ENSMUST00000188039.2	1516	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGAGTCAAGACAACATTA	NA	NA	NA	NA	NA	NA	NA	NA	47617942	47616426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_47616400_47617900
ENSMUST00000188069.2	chr1	+	701	3	FSM	ENSMUSG00000101172.2	ENSMUST00000188069.2	885	3	0	184	0	-184	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAATAAACTTCACCACCA	NA	NA	NA	NA	NA	NA	NA	NA	93233685	93244847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_93233830_93234264_93234347_93244372
ENSMUST00000188111.7	chr7	+	1626	7	FSM	ENSMUSG00000045411.17	ENSMUST00000188111.7	2131	7	19	486	19	122	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATCAGGGTCCCCACCC	NA	NA	NA	NA	NA	NA	NA	NA	43896177	43901255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_43896233_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUST00000188124.7	chr7	+	2048	10	FSM	ENSMUSG00000053877.13	ENSMUST00000188124.7	2048	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTCAGTTATTGAGTATT	NA	NA	NA	NA	NA	NA	NA	NA	127111154	127128494	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802_127125078_127127567_127127662_127128309
ENSMUST00000188151.2	chr4	+	2048	4	FSM	ENSMUSG00000028936.16	ENSMUST00000188151.2	2048	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCACTGTGCAAGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	152410325	152418527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
ENSMUST00000188214.7	chr15	-	638	3	FSM	ENSMUSG00000022584.15	ENSMUST00000188214.7	638	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGATCTCTATTCTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	74983546	74980179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_74980601_74982359_74982477_74983446
ENSMUST00000188260.7	chr3	-	739	3	FSM	ENSMUSG00000054426.12	ENSMUST00000188260.7	739	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTTGGCTATGGTG	NA	NA	NA	NA	NA	NA	NA	NA	115681743	115675229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_115675488_115679862_115680025_115681424
ENSMUST00000188288.2	chr1	+	231	1	FSM	ENSMUSG00000101330.2	ENSMUST00000188288.2	231	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGTTTACAGGTGACTTC	NA	NA	NA	NA	NA	NA	NA	NA	105692168	105692399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_105692200_105692400
ENSMUST00000188299.2	chr1	-	345	1	FSM	ENSMUSG00000101939.2	ENSMUST00000188299.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATGGTAATTAGTTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	24652200	24651855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_24651900_24652200
ENSMUST00000188368.7	chr7	-	1970	14	FSM	ENSMUSG00000037032.17	ENSMUST00000188368.7	1970	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTTCCTGTGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	105217984	105207690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105214855_105215152_105215159_105215257_105215386_105215754_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105217825
ENSMUST00000188371.7	chr1	+	2268	10	FSM	ENSMUSG00000025925.15	ENSMUST00000188371.7	2268	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAAAGCTGGCATCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	15875869	15914276	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
ENSMUST00000188398.7	chr9	+	313	3	FSM	ENSMUSG00000035048.14	ENSMUST00000188398.7	727	3	339	75	0	-67	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGGGGATAAAAATGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	102503861	102511374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_102503887_102506961_102507088_102511212
ENSMUST00000188465.2	chr5	+	1454	1	FSM	ENSMUSG00000101856.2	ENSMUST00000188465.2	1454	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCTCTGGTTTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	25735010	25736464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_25735000_25736500
ENSMUST00000188524.2	chr1	+	439	5	FSM	ENSMUSG00000025967.17	ENSMUST00000188524.2	681	5	93	149	93	-149	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGTTGAAGATGATAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	63216381	63218666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_63216451_63217597_63217725_63217990_63218058_63218406_63218533_63218616
ENSMUST00000188621.2	chr1	+	270	2	FSM	ENSMUSG00000041907.10	ENST00000436841.1	280	2	11	-1	11	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAAGAGATCGCAAGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	42992341	42992849	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_42992394_42992631
ENSMUST00000188642.2	chr13	+	674	3	FSM	ENSMUSG00000097709.9	ENSMUST00000188642.2	674	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTGCTGTGATCTCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	3548044	3551393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_3548157_3548274_3548359_3550915
ENSMUST00000188650.2	chr9	+	1508	8	FSM	ENSMUSG00000023277.14	ENSMUST00000188650.2	1508	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTGAGCCTGGGTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	106083996	106092586	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_106084166_106088917_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
ENSMUST00000188728.2	chr1	-	831	5	NIC	ENSMUSG00000070939.10	novel	5385	12	NA	NA	282	-10328	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCACAAAAAGTGAGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	43131607	43099050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_43099382_43101676_43101760_43106633_43106789_43110620_43110816_43131540
ENSMUST00000188740.2	chr9	+	694	1	FSM	ENSMUSG00000101615.2	ENSMUST00000188740.2	694	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGCTGGGCTAGTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	96419213	96419907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_96419200_96419900
ENSMUST00000188750.7	chr9	+	1713	14	FSM	ENSMUSG00000032411.16	ENSMUST00000188750.7	1713	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAGGAGAGAACTCATGT	NA	NA	NA	NA	NA	NA	NA	NA	96078389	96200024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ENSMUST00000188775.2	chr13	+	411	1	FSM	ENSMUSG00000101355.2	ENSMUST00000188775.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCGTCTTTCTGTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	21901828	21902239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_21901800_21902200
ENSMUST00000188811.2	chr2	+	356	2	FSM	ENSMUSG00000100135.2	ENSMUST00000188811.2	356	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1410	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCTATTCCAAGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	45046936	45058479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_45047073_45058259
ENSMUST00000188837.2	chr1	+	117	1	FSM	ENSMUSG00000100405.2	ENSMUST00000188837.2	117	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTCATTGTTTTTAATA	NA	NA	NA	NA	NA	NA	NA	NA	123132877	123132994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_123132900_123133000
ENSMUST00000188901.2	chr12	+	225	2	ISM	ENSMUSG00000034157.13	ENSMUST00000187814.7	4098	4	111	12440	111	-9745	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCTCAGGTTAACCATAG	NA	NA	NA	NA	NA	NA	NA	NA	86994227	86999696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_86994274_86999517
ENSMUST00000188931.7	chr1	+	2326	9	FSM	ENSMUSG00000026203.17	ENSMUST00000188931.7	3066	9	107	633	26	251	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACTTATTCCAGGGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	75213156	75221699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_75213234_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101
ENSMUST00000189013.8	chr16	-	982	6	FSM	ENSMUSG00000023791.19	ENSMUST00000189013.8	982	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGTTAGTTTGTCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	31918545	31903235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918293
ENSMUST00000189211.3	chr15	+	566	7	NIC	ENSMUSG00000022253.18	novel	1934	11	NA	NA	64	-1520	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTCTCTTCCAAGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	9085879	9106925	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_+_9085887_9091254_9091339_9092802_9092940_9096102_9096182_9100194_9100291_9103413_9103468_9106816
ENSMUST00000189393.2	chr1	-	706	5	FSM	ENSMUSG00000100257.2	ENSMUST00000189393.2	706	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATAGAATGGTCACTGA	NA	NA	NA	NA	NA	NA	NA	NA	130611808	130597997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_130598139_130598683_130598811_130609885_130609977_130610538_130610716_130611638
ENSMUST00000189443.2	chr1	+	756	6	NNC	ENSMUSG00000026342.11	novel	2733	16	NA	NA	23497	-672	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACGGAACTCCTCTGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	125512249	125522885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_+_125512295_125512810_125512971_125515101_125515193_125517575_125517703_125518769_125518867_125522649
ENSMUST00000189468.2	chr10	+	404	2	ISM	ENSMUSG00000019933.8	ENSMUST00000020090.8	443	3	12230	1	12230	-1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTGTGGCATGGAGTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	70052726	70055540	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_70052897_70055306
ENSMUST00000189496.7	chr1	-	1392	6	FSM	ENSMUSG00000026219.15	ENST00000409677.5	1392	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATACTGACTGGCACTTAA	NA	NA	NA	NA	NA	NA	NA	NA	84817022	84760547	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_84760685_84763811_84763918_84771245_84772049_84773410_84773537_84792543_84792691_84816949
ENSMUST00000189503.7	chr1	-	1514	10	NNC	ENSMUSG00000026260.13	novel	2020	10	NA	NA	103	-269	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	1029	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTTATCTCTGAAGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	92401479	92367000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398672_92398708_92401384
ENSMUST00000189516.2	chr1	-	658	6	ISM	ENSMUSG00000042699.12	ENST00000436565.2	3103	24	5697	13890	5697	-9643	internal_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAGCTTAAATACATTGT	NA	NA	NA	NA	NA	NA	NA	NA	153353899	153347940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786
ENSMUST00000189517.2	chr19	+	743	1	FSM	ENSMUSG00000091014.4	ENSMUST00000189517.2	743	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAGGAATGCTCCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	12824045	12824788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_12824000_12824800
ENSMUST00000189572.2	chr1	-	508	2	ISM	ENSMUSG00000042305.13	ENST00000503901.1	1120	8	11565	-103	11565	103	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGGCTGTTTGGGTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	134278043	134275647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_134275933_134277820
ENSMUST00000189654.2	chr15	+	818	3	FSM	ENSMUSG00000022583.13	ENSMUST00000189654.2	818	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCAAGATCTCAGTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	75140550	75144084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_75140649_75141628_75141746_75143481
ENSMUST00000189707.3	chr9	+	385	3	ISM	ENSMUSG00000093803.6	ENSMUST00000239563.2	4016	11	4590	3364	4590	-3364	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGTGTGGTCTGGGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	124200416	124201395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_124200507_124200880_124201057_124201276
ENSMUST00000189770.7	chr10	-	2232	11	FSM	ENSMUSG00000019813.17	ENSMUST00000189770.7	2232	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	41685864	41594836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568_41685660_41685783
ENSMUST00000189777.2	chr9	-	533	2	NNC	ENSMUSG00000066456.15	novel	862	6	NA	NA	35645	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATCCACCTGTTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	82992878	82992000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_-_82992483_82992827
ENSMUST00000189791.2	chr1	+	251	1	FSM	ENSMUSG00000049881.14	ENSMUST00000189791.2	251	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCTACTGTTTGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	157247471	157247722	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_157247500_157247700
ENSMUST00000189799.7	chr3	+	1289	8	FSM	ENSMUSG00000033554.18	ENSMUST00000189799.7	1558	8	15	254	15	-254	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAGAAGAAGCAGGTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	115681500	115722483	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_115681807_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157
ENSMUST00000189885.2	chr12	+	665	2	FSM	ENSMUSG00000096753.8	ENSMUST00000179363.2	1406	2	-6	747	-6	-398	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCATCTTTGTATGAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	103281211	103282577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_103281330_103282030
ENSMUST00000189909.7	chr2	+	439	5	FSM	ENSMUSG00000074578.15	ENSMUST00000189909.7	738	5	299	0	12	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	166905152	166907782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907353_166907401_166907606
ENSMUST00000189909.7-1	chr2	+	516	5	FSM	ENSMUSG00000074578.15	ENSMUST00000189909.7	738	5	82	140	82	-140	multi-exon	FALSE	canonical	NA	NA	NA	NA	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCCAGCCCCACAAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	166904935	166907642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907353_166907401_166907606
ENSMUST00000189936.7	chr1	+	1696	11	FSM	ENSMUSG00000018189.13	ENSMUST00000189936.7	1696	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTGGATTATTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	143653009	143683043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143682421
ENSMUST00000189946.7	chr1	+	1291	7	FSM	ENSMUSG00000026434.13	ENSMUST00000189946.7	2375	7	22	1062	0	-1062	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATTTTGTCTCAGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	131838293	131859355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_131838489_131846742_131846793_131849680_131849787_131852323_131852380_131855801_131855955_131857353_131857501_131858771
ENSMUST00000189988.3	chr2	-	390	3	FSM	ENSMUSG00000076437.12	ENSMUST00000189988.3	390	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGGTTGGGAAAGAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	84500998	84500360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_84500461_84500616_84500735_84500826
ENSMUST00000190022.7	chr10	-	1949	10	FSM	ENSMUSG00000019813.17	ENSMUST00000190022.7	1949	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCCTGTGGAAATATT	NA	NA	NA	NA	NA	NA	NA	NA	41685603	41594841	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616910_41621766_41621918_41685568
ENSMUST00000190113.2	chr9	+	904	1	FSM	ENSMUSG00000101698.2	ENSMUST00000190113.2	904	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGTTGTTGTGTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	88709574	88710478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_88709600_88710500
ENSMUST00000190157.7	chr8	-	1776	5	FSM	ENSMUSG00000071302.11	ENSMUST00000190157.7	1776	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGAACAGAAAATATGGTT	NA	NA	NA	NA	NA	NA	NA	NA	129960527	129942834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_129944231_129946582_129946633_129948024_129948086_129948304_129948432_129960385
ENSMUST00000190226.7	chr9	-	1182	5	FSM	ENSMUSG00000032803.16	ENSMUST00000190226.7	3107	5	0	1925	0	921	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGGAAGTTCAAGAGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	103242178	103232227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_103232513_103233478_103233639_103237074_103237218_103241173_103241251_103241661
ENSMUST00000190255.7	chr6	+	3431	5	FSM	ENSMUSG00000041390.19	ENSMUST00000101663.10	3431	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTGCTTTAAGATCTT	NA	NA	NA	NA	NA	NA	NA	NA	15720659	15802164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_15720963_15721185_15721364_15740986_15741110_15770212_15770492_15799616
ENSMUST00000190277.2	chr1	-	783	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCCCTTAGTATAATTAA	NA	NA	NA	NA	NA	NA	NA	NA	24653052	24652269	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_24652300_24653100
ENSMUST00000190279.7	chr9	+	311	3	FSM	ENSMUSG00000035048.14	ENSMUST00000190279.7	589	3	28	250	0	-67	multi-exon	TRUE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGGGGATAAAAATGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	102503522	102511374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_102503546_102506961_102507088_102511212
ENSMUST00000190422.3	chr1	+	2633	1	FSM	ENSMUSG00000101523.3	ENSMUST00000190422.3	2633	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTTGGTTTTATTTATCAA	NA	NA	NA	NA	NA	NA	NA	NA	156351581	156354214	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_156351600_156354200
ENSMUST00000190457.2	chr8	-	927	3	FSM	ENSMUSG00000074217.9	ENSMUST00000190457.2	1351	3	424	0	424	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGTGCAAGCTATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	84738363	84736850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_84737122_84737339_84737402_84737769
ENSMUST00000190496.2	chr17	+	1395	3	FSM	ENSMUSG00000034595.18	ENSMUST00000190496.2	1395	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGCTGCCTTCCTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	36179294	36186486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_36179678_36184617_36184832_36185688
ENSMUST00000190504.3	chr1	-	2091	2	FSM	ENSMUSG00000099364.3	ENSMUST00000190504.3	2091	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAAAACAAGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	78588078	78571662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_78573492_78587816
ENSMUST00000190511.2	chr9	+	798	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3140	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTACACTGAATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	84306036	84306834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_84306000_84306800
ENSMUST00000190566.3	chr13	-	2406	4	FSM	ENSMUSG00000058883.17	ENSMUST00000190566.3	2406	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCAGTGTCGTGTTTAGT	NA	NA	NA	NA	NA	NA	NA	NA	67229609	67217462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_67219593_67222149_67222246_67222896_67222981_67229513
ENSMUST00000190579.2	chr9	+	798	1	FSM	ENSMUSG00000101502.2	ENSMUST00000190579.2	798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTACACTGAATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	97061231	97062029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_97061200_97062000
ENSMUST00000190580.2	chr9	-	309	2	ISM	ENSMUSG00000066456.15	ENSMUST00000161796.9	862	6	35512	233	35377	-233	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAGCTGCGTGTGAAATGG	NA	NA	NA	NA	NA	NA	NA	NA	82993146	82992233	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_82992483_82993086
ENSMUST00000190729.2	chr13	+	1184	3	FSM	ENSMUSG00000078941.10	ENSMUST00000190729.2	1184	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGTACTTTGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	100787887	100792566	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_100787954_100790698_100790792_100791541
ENSMUST00000190730.7	chr15	-	691	6	FSM	ENSMUSG00000033029.13	ENSMUST00000190730.7	691	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGGCTTTGTCCTGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	79025434	79019216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_79019423_79019552_79019654_79019836_79019966_79023437_79023501_79025080_79025193_79025354
ENSMUST00000190879.2	chr5	-	398	1	FSM	ENSMUSG00000099891.2	ENSMUST00000190879.2	398	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAAGATGTATCTATTT	NA	NA	NA	NA	NA	NA	NA	NA	24414722	24414324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_24414300_24414700
ENSMUST00000190896.2	chr14	+	1357	4	FSM	ENSMUSG00000099528.2	ENSMUST00000190896.2	1357	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTGCAGTTTGTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	71090372	71111394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_71090436_71093220_71093350_71109694_71109847_71110381
ENSMUST00000190924.2	chr9	-	1213	3	ISM	ENSMUSG00000056131.14	ENSMUST00000070064.11	2666	13	14247	66	14247	-66	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGAATAATGCTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	86439633	86436495	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_86437457_86438244_86438419_86439555
ENSMUST00000190930.2	chr2	+	567	1	FSM	ENSMUSG00000099632.2	ENSMUST00000190930.2	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACCAGTCTCTGGCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	163261714	163262281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_163261700_163262300
ENSMUST00000190940.2	chr11	+	5037	16	FSM	ENSMUSG00000020888.17	ENSMUST00000190940.2	5037	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATGTTACCCCACTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	69891442	69903127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278_69898347_69898640_69898770_69898845_69898978_69899106_69899287_69899602_69899822_69899969_69901604_69901702
ENSMUST00000190993.7	chr11	-	1326	5	FSM	ENSMUSG00000034120.19	ENSMUST00000190993.7	1326	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCAAAATGTT	NA	NA	NA	NA	NA	NA	NA	NA	116743898	116740879	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_116741180_116741681_116741788_116742473_116742578_116742846_116743158_116743393
ENSMUST00000191069.2	chr9	-	676	2	ISM	ENSMUSG00000042757.17	ENST00000508711.5	2073	3	120455	1309	120455	173	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTCTTTTTGTATGT	NA	NA	NA	NA	NA	NA	NA	NA	103366542	103361461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_103361983_103366387
ENSMUST00000191142.7	chr1	+	2852	15	FSM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	12	6643	12	891	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGCACACTAAACGAAAGAC	NA	NA	NA	NA	NA	NA	NA	NA	59724179	59751560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
ENSMUST00000191273.7	chr4	-	1348	7	FSM	ENSMUSG00000028416.14	ENSMUST00000191273.7	1348	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTGGCTCTGTGGTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	40948294	40936398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_40936677_40937131_40937195_40939076_40939185_40941524_40941639_40943624_40943708_40946168_40946298_40947721
ENSMUST00000191317.2	chr14	-	705	3	NNC	ENSMUSG00000096001.3	novel	754	3	NA	NA	-3921	2	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGAGCATCCTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	36835979	36824096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr14_-_36824649_36829330_36829412_36835907
ENSMUST00000191409.7	chr1	+	1049	5	FSM	ENSMUSG00000100009.7	ENSMUST00000191409.7	1049	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATCCTGTTAGTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	98517241	98535109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_98517383_98524972_98525119_98532855_98532913_98533442_98533706_98534667
ENSMUST00000191416.2	chr1	-	364	2	FSM	ENSMUSG00000100940.2	ENSMUST00000191416.2	364	2	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGCCAAATGTTAACAAAG	NA	NA	NA	NA	NA	NA	NA	NA	87044880	87044042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_87044284_87044757
ENSMUST00000191436.7	chr15	+	1122	4	FSM	ENSMUSG00000022587.15	ENSMUST00000191436.7	1122	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	74827501	74831180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_74827567_74829628_74829727_74830117_74830238_74830341
ENSMUST00000191471.7	chr1	+	2964	16	FSM	ENSMUSG00000073725.9	ENSMUST00000191471.7	4453	16	30	1459	0	1045	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGACCGCCTTATATATG	NA	NA	NA	NA	NA	NA	NA	NA	24717740	24803070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_24717898_24724477_24724655_24732021_24732083_24743901_24744000_24745057_24745126_24750592_24750682_24753989_24754064_24767626_24767753_24770827_24770981_24782963_24783029_24783336_24783440_24783946_24784052_24785885_24786036_24787880_24787960_24801272_24801365_24801703
ENSMUST00000191699.2	chr1	-	381	1	FSM	ENSMUSG00000102824.2	ENSMUST00000191699.2	381	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	432	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGACGCGCTTAGACAGAC	NA	NA	NA	NA	NA	NA	NA	NA	189010020	189009639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_189009600_189010000
ENSMUST00000191783.6	chr3	+	874	7	FSM	ENSMUSG00000027667.14	ENSMUST00000191783.6	1988	7	0	1114	0	-1056	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAAGACGTCCCAATTGC	NA	NA	NA	NA	NA	NA	NA	NA	32564683	32573778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_32564882_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
ENSMUST00000191805.7	chr3	+	1705	10	FSM	ENSMUSG00000025762.17	ENSMUST00000191805.7	1705	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGTTTTTAAGGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	40905065	40932228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_40905120_40916042_40916102_40916603_40916664_40918402_40918578_40921799_40921941_40924325_40924470_40924885_40925052_40926795_40926941_40930935_40931111_40931642
ENSMUST00000191852.2	chr1	-	1487	1	FSM	ENSMUSG00000102478.2	ENSMUST00000191852.2	1487	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAAAAAGGGGGGTATA	NA	NA	NA	NA	NA	NA	NA	NA	182988121	182986634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_182986600_182988100
ENSMUST00000191904.2	chr1	-	238	3	FSM	ENSMUSG00000102433.2	ENSMUST00000191904.2	238	3	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAAATGACAGCTTTAGT	NA	NA	NA	NA	NA	NA	NA	NA	173678346	173676714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_173676833_173677778_173677812_173678259
ENSMUST00000191916.6	chr3	-	1376	2	FSM	ENSMUSG00000040374.14	ENSMUST00000191916.6	1376	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGTGCATTTATTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	5628789	5625558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_5626825_5628679
ENSMUST00000191947.6	chr1	+	1635	13	FSM	ENSMUSG00000026575.16	ENSMUST00000191947.6	1635	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGTGACTTTGGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	164135641	164264863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_164135820_164140424_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
ENSMUST00000191997.2	chr9	+	787	2	FSM	ENSMUSG00000063856.9	ENSMUST00000191997.2	787	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGATGGGCGCTGGTCCC	NA	NA	NA	NA	NA	NA	NA	NA	108216441	108217449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_108216758_108216978
ENSMUST00000192045.2	chr3	+	490	1	FSM	ENSMUSG00000103034.2	ENSMUST00000192045.2	490	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGGCACAGAGCTTAACAA	NA	NA	NA	NA	NA	NA	NA	NA	5815865	5816355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_5815900_5816400
ENSMUST00000192053.2	chr9	-	347	2	FSM	ENSMUSG00000104208.2	ENSMUST00000192053.2	347	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAGAAGTTAAGAAATTCT	NA	NA	NA	NA	NA	NA	NA	NA	108215472	108214287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_108214612_108215449
ENSMUST00000192057.6	chr3	+	1390	12	ISM	ENSMUSG00000001415.11	ENSMUST00000001451.11	4448	22	105	11284	105	-11284	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGGCAGAAAGAGCCGTA	NA	NA	NA	NA	NA	NA	NA	NA	88243671	88258361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285
ENSMUST00000192076.3	chr1	+	2384	11	FSM	ENSMUSG00000072258.12	ENSMUST00000192076.3	2384	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAGTAGTATTTTATTC	NA	NA	NA	NA	NA	NA	NA	NA	183170324	183191020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_183170499_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
ENSMUST00000192177.2	chr3	+	966	1	FSM	ENSMUSG00000103986.2	ENSMUST00000192177.2	966	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGAGGGGTGTGCTCGCC	NA	NA	NA	NA	NA	NA	NA	NA	59674695	59675661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_59674700_59675700
ENSMUST00000192248.2	chr1	-	1271	11	FSM	ENSMUSG00000026683.15	ENSMUST00000192248.2	1271	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAAAGTGTGGGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	169358980	169337685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169358890
ENSMUST00000192269.3	chr1	-	560	5	NNC	ENSMUSG00000026558.14	novel	4731	7	NA	NA	719	-7010	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTTGTATTCTTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	167112170	167057461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_-_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167112108
ENSMUST00000192296.2	chr3	+	1603	1	FSM	ENSMUSG00000103053.2	ENSMUST00000192296.2	1603	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCCTTCTTCCAATGTC	NA	NA	NA	NA	NA	NA	NA	NA	106496575	106498178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_106496600_106498200
ENSMUST00000192413.2	chr2	-	1943	1	FSM	ENSMUSG00000103009.2	ENSMUST00000192413.2	1943	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATTTGTGAGGAAATTG	NA	NA	NA	NA	NA	NA	NA	NA	129041114	129039171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_129039200_129041100
ENSMUST00000192462.6	chr3	+	2505	9	FSM	ENSMUSG00000028199.19	ENSMUST00000192462.6	2505	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCCTTGTCTGTCTCGTG	NA	NA	NA	NA	NA	NA	NA	NA	154302347	154328817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
ENSMUST00000192473.2	chr8	-	4097	1	FSM	ENSMUSG00000102615.2	ENSMUST00000192473.2	4097	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGTTTTGGTCATGG	NA	NA	NA	NA	NA	NA	NA	NA	15078422	15074325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_15074300_15078400
ENSMUST00000192584.2	chr9	-	2525	14	FSM	ENSMUSG00000039542.17	ENSMUST00000192584.2	2525	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACGGTGACGAAATAATTA	NA	NA	NA	NA	NA	NA	NA	NA	49710058	49442575	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_49443274_49454310_49454443_49455950_49456122_49456452_49456550_49456898_49457084_49457457_49457609_49468395_49468539_49476168_49476342_49476768_49476887_49477974_49478113_49478636_49478781_49479630_49479850_49481125_49481201_49709977
ENSMUST00000192704.6	chr1	+	2859	14	FSM	ENSMUSG00000026554.16	ENSMUST00000192704.6	2859	14	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGTATCAAGTTAAAATTA	NA	NA	NA	NA	NA	NA	NA	NA	171975708	172023033	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_171975906_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
ENSMUST00000192715.6	chr3	+	5555	8	FSM	ENSMUSG00000037730.14	ENSMUST00000192715.6	5555	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCACTCACTATTTTGAC	NA	NA	NA	NA	NA	NA	NA	NA	30656213	30674022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_30656845_30657652_30657950_30661185_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699
ENSMUST00000192727.6	chr9	-	2383	18	FSM	ENSMUSG00000034684.13	ENSMUST00000192727.6	2383	18	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGCCTGCATAGGACCAG	NA	NA	NA	NA	NA	NA	NA	NA	107582755	107559616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_107560039_107560758_107560893_107561171_107561240_107561420_107561579_107561748_107561791_107561886_107561976_107562523_107562747_107564388_107564534_107564688_107564759_107564928_107565044_107565147_107565288_107565428_107565549_107566884_107566979_107568554_107568648_107569366_107569487_107569587_107569651_107569754_107569916_107582629
ENSMUST00000192731.2	chr3	-	250	1	FSM	ENSMUSG00000102914.2	ENSMUST00000192731.2	250	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCTACACAAGTTCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	65876572	65876322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_65876300_65876600
ENSMUST00000192775.2	chr1	-	879	2	ISM	ENSMUSG00000102976.7	ENST00000367210.3	5852	18	19	34796	19	-33147	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCACTATTTTTATATTGA	NA	NA	NA	NA	NA	NA	NA	NA	133589118	133582401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_133583137_133588974
ENSMUST00000192862.2	chr1	+	2889	1	FSM	ENSMUSG00000102325.2	ENSMUST00000192862.2	2889	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTAACAATCATTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	103652069	103654958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_103652100_103655000
ENSMUST00000192866.6	chr1	-	1844	12	FSM	ENSMUSG00000037395.17	ENSMUST00000192866.6	1844	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTACCAGTGCTCATC	NA	NA	NA	NA	NA	NA	NA	NA	191822359	191785086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_191785456_191785925_191786168_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
ENSMUST00000192886.6	chr9	-	1094	3	FSM	ENSMUSG00000039461.13	ENSMUST00000192886.6	1094	3	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGTTCTTTTTGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	108183359	108180852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_108181453_108182524_108182580_108182920
ENSMUST00000192974.2	chr1	+	2384	1	FSM	ENSMUSG00000104114.2	ENSMUST00000192974.2	2384	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAATAAATAAATTG	NA	NA	NA	NA	NA	NA	NA	NA	89411159	89413543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_89411200_89413500
ENSMUST00000193083.6	chr1	-	2277	9	FSM	ENSMUSG00000067653.13	ENSMUST00000193083.6	2277	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGTTGCCTCATGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	36575602	36569268	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_36570723_36570803_36570903_36570989_36571089_36571192_36571292_36571382_36571482_36571661_36571788_36573067_36573197_36573371_36573519_36575577
ENSMUST00000193091.2	chr1	+	841	4	ISM	ENSMUSG00000026687.15	ENSMUST00000028004.11	2835	11	0	12722	0	-12722	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGAATGTCTCCTCCGCA	NA	NA	NA	NA	NA	NA	NA	NA	167177559	167183379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240
ENSMUST00000193209.2	chr1	-	600	2	FSM	ENSMUSG00000103156.2	ENSMUST00000193209.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTCCAAGTACCACAGACC	NA	NA	NA	NA	NA	NA	NA	NA	180596221	180591061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_180591486_180596045
ENSMUST00000193210.6	chr1	+	865	4	FSM	ENSMUSG00000061518.12	ENSMUST00000193210.6	865	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGCTAAAAATTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	36730564	36732762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_36730771_36731291_36731366_36731531_36731632_36732277
ENSMUST00000193210.6-0	chr1	+	721	4	FSM	ENSMUSG00000061518.12	ENSMUST00000193210.6	865	4	144	0	144	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGCTAAAAATTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	36730708	36732762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_36730771_36731291_36731366_36731531_36731632_36732277
ENSMUST00000193226.2	chr1	-	177	1	FSM	ENSMUSG00000103979.2	ENSMUST00000193226.2	177	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGGGGAGTTCAGAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	180682023	180681846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_180681800_180682000
ENSMUST00000193287.6	chr3	+	2211	7	FSM	ENSMUSG00000027667.14	ENSMUST00000193287.6	2211	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGTCATAGTTACCACT	NA	NA	NA	NA	NA	NA	NA	NA	32564407	32574982	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_32564739_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
ENSMUST00000193338.6	chr3	-	795	3	FSM	ENSMUSG00000028066.16	ENSMUST00000193338.6	795	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	88317633	88301449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_88301878_88303211_88303408_88317462
ENSMUST00000193411.2	chr3	+	444	2	FSM	ENSMUSG00000027694.10	ENST00000430836.1	443	2	0	-1	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCAAGGCCCCGGCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	60784445	60785008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_60784468_60784586
ENSMUST00000193421.2	chr9	+	840	6	ISM	ENSMUSG00000062867.14	ENST00000678724.1	1673	14	-18	2237	-18	-2237	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGCTGCATTATAAATAAG	NA	NA	NA	NA	NA	NA	NA	NA	108437637	108440535	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108437831_108438232_108438282_108438795_108438898_108439372_108439580_108439990_108440079_108440334
ENSMUST00000193486.2	chr1	-	339	1	FSM	ENSMUSG00000104360.2	ENSMUST00000193486.2	339	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTGGCCCCTGCACCGCT	NA	NA	NA	NA	NA	NA	NA	NA	136717258	136716919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_136716900_136717300
ENSMUST00000193511.2	chr1	+	1916	1	FSM	ENSMUSG00000102404.2	ENSMUST00000193511.2	1916	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCTCAGAGTTTAATAAT	NA	NA	NA	NA	NA	NA	NA	NA	153590399	153592315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_153590400_153592300
ENSMUST00000193667.6	chr1	-	553	3	FSM	ENSMUSG00000103308.6	ENSMUST00000193667.6	553	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTTGGTCAAGAATTATA	NA	NA	NA	NA	NA	NA	NA	NA	184361670	184342476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_184342774_184347667_184347890_184361636
ENSMUST00000193673.6	chr1	+	662	5	FSM	ENSMUSG00000026087.12	ENSMUST00000193673.6	662	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTTCGTTCAGTTCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	37929612	37937445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_37929666_37933019_37933097_37934410_37934492_37936768_37936916_37937141
ENSMUST00000193856.2	chr18	+	625	4	NNC	ENSMUSG00000102206.6	novel	5360	4	NA	NA	1325	-2171	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAAGGGAACAGCACGAC	NA	NA	NA	NA	NA	NA	NA	NA	37145304	37318270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr18_+_37145510_37289207_37289267_37292317_37292407_37317998
ENSMUST00000193907.6	chr1	+	531	4	FSM	ENSMUSG00000062169.14	ENSMUST00000193907.6	531	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCACAATTGAGGAGCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	180972257	180993813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_180972467_180983423_180983537_180989639_180989781_180993745
ENSMUST00000193908.2	chr8	+	2181	1	FSM	ENSMUSG00000103593.2	ENSMUST00000193908.2	2181	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACCATGATGAAGGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	84927497	84929678	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_84927500_84929700
ENSMUST00000194248.2	chr4	+	936	8	FSM	ENSMUSG00000006395.17	ENSMUST00000194248.2	936	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTGTATATTACAG	NA	NA	NA	NA	NA	NA	NA	NA	118217186	118219941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_118217429_118217502_118217587_118218812_118218928_118219070_118219150_118219237_118219288_118219387_118219458_118219559_118219695_118219780
ENSMUST00000194260.2	chr9	-	700	4	ISM	ENSMUSG00000032579.15	ENSMUST00000118051.2	453	5	8880	-279	8880	279	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAATAAATGGTGAGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	107206651	107204910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522
ENSMUST00000194361.6	chr1	-	2996	6	FSM	ENSMUSG00000026080.14	ENSMUST00000194361.6	2996	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAACAAAAGTGTATCTGG	NA	NA	NA	NA	NA	NA	NA	NA	38937242	38902957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_38905117_38907061_38907168_38910681_38910917_38913029_38913122_38923430_38923563_38936970
ENSMUST00000194444.2	chr1	-	653	1	FSM	ENSMUSG00000103669.2	ENSMUST00000194444.2	653	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	188943210	188942557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_188942600_188943200
ENSMUST00000194542.6	chr9	-	3151	6	FSM	ENSMUSG00000003308.16	ENSMUST00000194542.6	3151	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGGCTCTGAATTAACCT	NA	NA	NA	NA	NA	NA	NA	NA	21150628	21141025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150371
ENSMUST00000194594.2	chr1	+	1551	1	FSM	ENSMUSG00000103071.2	ENSMUST00000194594.2	1551	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTTGTGCAGGTCATATA	NA	NA	NA	NA	NA	NA	NA	NA	44796101	44797652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_44796100_44797700
ENSMUST00000194605.2	chr1	+	626	2	FSM	ENSMUSG00000102135.2	ENSMUST00000194605.2	626	2	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATGCGTAGTGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	6986782	6993812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_6987220_6993623
ENSMUST00000194649.2	chr3	+	525	4	FSM	ENSMUSG00000039221.11	ENSMUST00000194649.2	525	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGGTTCATCAGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	28859617	28861573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_28859693_28860651_28860742_28860885_28861008_28861335
ENSMUST00000194649.2-0	chr3	+	395	4	FSM	ENSMUSG00000039221.11	ENSMUST00000194649.2	525	4	0	130	0	-121	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTCAAGATGAAGATGGTT	NA	NA	NA	NA	NA	NA	NA	NA	28859617	28861443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_28859693_28860651_28860742_28860885_28861008_28861335
ENSMUST00000194707.3	chr3	+	1632	3	FSM	ENSMUSG00000049133.8	ENST00000388718.5	2668	3	0	1036	0	-1036	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTTGAGGAGCATGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	93104584	93109527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_93104636_93107489_93107655_93108111
ENSMUST00000194711.2	chr9	+	392	1	FSM	ENSMUSG00000103276.2	ENSMUST00000194711.2	392	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTCCAAATTTCTGATACA	NA	NA	NA	NA	NA	NA	NA	NA	98649982	98650374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_98650000_98650400
ENSMUST00000194746.6	chr1	+	703	4	FSM	ENSMUSG00000073702.12	ENSMUST00000194746.6	703	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	39406958	39410447	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034
ENSMUST00000194813.2	chr16	+	519	1	FSM	ENSMUSG00000103847.2	ENSMUST00000194813.2	519	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGGGCAGAGACCAAATT	NA	NA	NA	NA	NA	NA	NA	NA	32227353	32227872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_32227400_32227900
ENSMUST00000194825.2	chr3	-	223	2	FSM	ENSMUSG00000103396.2	ENSMUST00000194825.2	223	2	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTGGCTCTGCCCACTT	NA	NA	NA	NA	NA	NA	NA	NA	71373002	71372561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_71372612_71372829
ENSMUST00000194857.6	chr1	+	501	5	ISM	ENSMUSG00000026087.12	ENSMUST00000027256.12	969	6	2456	370	-1002	-173	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCACAGAAGAGACCATGTC	NA	NA	NA	NA	NA	NA	NA	NA	37932013	37937246	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_37932105_37933019_37933097_37934410_37934492_37936768_37936916_37937141
ENSMUST00000194875.6	chr9	+	748	3	FSM	ENSMUSG00000032599.13	ENSMUST00000194875.6	748	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTGGCTCACCCACCAT	NA	NA	NA	NA	NA	NA	NA	NA	108661063	108674891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_108661070_108673262_108673596_108674482
ENSMUST00000194876.6	chr3	+	1059	9	FSM	ENSMUSG00000028199.19	ENSMUST00000192462.6	2505	9	433	1013	433	-1013	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTATCCATTGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	154302780	154327804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
ENSMUST00000194904.2	chr9	+	961	8	ISM	ENSMUSG00000062867.14	ENST00000678724.1	1673	14	2678	179	2678	-179	internal_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACAGCCTCCATTCGTAA	NA	NA	NA	NA	NA	NA	NA	NA	108440333	108442593	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108440535_108440619_108440711_108440794_108440891_108441111_108441184_108441833_108441978_108442064_108442210_108442300_108442445_108442525
ENSMUST00000194906.2	chr9	-	637	3	NIC	ENSMUSG00000037190.13	novel	1162	4	NA	NA	69	-302	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGTTATTACGAAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	107419323	107417075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_107417585_107418201_107418240_107419233
ENSMUST00000195015.6	chr1	+	860	7	FSM	ENSMUSG00000052428.11	ENSMUST00000195015.6	1573	7	358	355	358	-355	multi-exon	FALSE	canonical	NA	NA	NA	NA	229	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAGTAATAAGTGCACTCA	NA	NA	NA	NA	NA	NA	NA	NA	167136304	167157999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_167136503_167136874_167136953_167141675_167141736_167143811_167143859_167146830_167146899_167153444_167153590_167157735
ENSMUST00000195032.6	chr1	-	1071	5	FSM	ENSMUSG00000058407.13	ENSMUST00000195032.6	1444	5	373	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCGTCTGTCTGTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	38036324	38026723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38035973
ENSMUST00000195061.6	chr1	-	781	4	NNC	ENSMUSG00000047539.10	novel	4925	5	NA	NA	37	-482	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTCTGGGCAGAGTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	182169136	182144555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_-_182144851_182145374_182145502_182157438_182157549_182168887
ENSMUST00000195161.2	chr3	-	147	1	FSM	ENSMUSG00000103574.2	ENSMUST00000195161.2	147	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAATTCACACAAAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	88192060	88191913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_88191900_88192100
ENSMUST00000195236.2	chr1	-	867	1	FSM	ENSMUSG00000102478.2	ENSMUST00000195236.2	867	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGCACAGAAGACTGACGGA	NA	NA	NA	NA	NA	NA	NA	NA	182987980	182987113	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_182987100_182988000
ENSMUST00000195240.2	chr1	+	1221	1	FSM	ENSMUSG00000102917.2	ENSMUST00000195240.2	1221	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCTTGCTCAGCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	33104210	33105431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_33104200_33105400
ENSMUST00000195247.6	chr1	-	1699	5	FSM	ENSMUSG00000058407.13	ENSMUST00000195247.6	1699	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACATGTCTGTTTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	38036974	38026474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036244
ENSMUST00000195280.3	chrX	-	4212	3	FSM	ENSMUSG00000087403.10	ENSMUST00000195280.3	4212	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGACTGTGTGACTTCC	NA	NA	NA	NA	NA	NA	NA	NA	151110491	151077823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_151081871_151110156_151110236_151110405
ENSMUST00000195283.2	chr9	-	868	1	FSM	ENSMUSG00000104280.2	ENSMUST00000195283.2	868	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAGGGTTTTTATACAAG	NA	NA	NA	NA	NA	NA	NA	NA	108236268	108235400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_108235400_108236300
ENSMUST00000195334.2	chr3	+	816	2	ISM	ENSMUSG00000027668.14	ENSMUST00000118286.8	2789	17	42664	-374	42664	374	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTCTCTCTTTAGACAC	NA	NA	NA	NA	NA	NA	NA	NA	32628366	32631876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_32628518_32631211
ENSMUST00000195370.6	chr9	+	829	7	NNC	ENSMUSG00000010057.9	novel	1441	11	NA	NA	15	-1072	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGTGAGTCTGGGATGCA	NA	NA	NA	NA	NA	NA	NA	NA	107419439	107421833	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421375_107421487_107421578_107421677_107421796
ENSMUST00000195373.2	chr1	+	587	4	FSM	ENSMUSG00000026087.12	ENSMUST00000195373.2	587	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGCTGATGGAGTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	37933015	37937419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_37933097_37934410_37934492_37936768_37936916_37937141
ENSMUST00000195400.2	chr1	-	2071	1	FSM	ENSMUSG00000104060.2	ENSMUST00000195400.2	2071	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAACCAAAAAGAAGACA	NA	NA	NA	NA	NA	NA	NA	NA	131306269	131304198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_131304200_131306300
ENSMUST00000195426.2	chr1	+	1746	1	FSM	ENSMUSG00000102700.2	ENSMUST00000195426.2	1746	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAGGAGAAAAATCATT	NA	NA	NA	NA	NA	NA	NA	NA	89024794	89026540	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_89024800_89026500
ENSMUST00000195526.2	chr1	-	631	1	FSM	ENSMUSG00000103653.2	ENSMUST00000195526.2	631	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	252	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGACTGAAGAGACAAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	191758750	191758119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_191758100_191758800
ENSMUST00000195663.2	chr1	+	405	1	FSM	ENSMUSG00000104126.2	ENSMUST00000195663.2	405	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGGGGGCAGCTTAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	178126960	178127365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_178127000_178127400
ENSMUST00000195680.2	chr2	+	1844	1	FSM	ENSMUSG00000103475.2	ENSMUST00000195680.2	1844	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAAGGAGAAAAATCAT	NA	NA	NA	NA	NA	NA	NA	NA	14350487	14352331	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_14350500_14352300
ENSMUST00000195812.2	chr3	+	796	1	FSM	ENSMUSG00000103423.2	ENSMUST00000195812.2	796	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTACACTGAGTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	33675756	33676552	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_33675800_33676600
ENSMUST00000195834.2	chr3	+	804	3	ISM	ENSMUSG00000027559.6	ENSMUST00000029076.6	1679	7	5640	454	5640	-454	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	2099	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTTAAGTGAAAACACACG	NA	NA	NA	NA	NA	NA	NA	NA	14934237	14937129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_14934358_14935101_14935258_14936601
ENSMUST00000195941.2	chr3	-	153	1	FSM	ENSMUSG00000105644.2	ENSMUST00000195941.2	153	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGATTCACACAATGGCA	NA	NA	NA	NA	NA	NA	NA	NA	90559173	90559020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_90559000_90559200
ENSMUST00000195970.5	chr14	-	2057	10	FSM	ENSMUSG00000000958.11	ENSMUST00000195970.5	2057	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGTCTGAGTGGCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	54647673	54606901	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54647534
ENSMUST00000196052.2	chr3	+	1556	2	FSM	ENSMUSG00000106157.2	ENSMUST00000196052.2	1556	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTTTGTTTATTGACTAT	NA	NA	NA	NA	NA	NA	NA	NA	150999798	151001942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_150999927_151000514
ENSMUST00000196069.5	chr5	+	1150	4	FSM	ENSMUSG00000007812.17	ENSMUST00000196069.5	1150	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGTACTTTTTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	145168538	145174658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145173859
ENSMUST00000196109.5	chr5	-	1660	11	NNC	ENSMUSG00000037364.13	novel	3024	20	NA	NA	7542	-10	at_least_one_novel_splicesite	FALSE	non_canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTAGTGTGTGTTAACTGT	NA	NA	NA	NA	NA	NA	NA	NA	137297907	137293986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296931_137297146_137297819
ENSMUST00000196114.2	chr3	+	346	1	FSM	ENSMUSG00000106037.2	ENSMUST00000196114.2	346	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	475	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGACAACTGAATAAATCG	NA	NA	NA	NA	NA	NA	NA	NA	119503164	119503510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_119503200_119503500
ENSMUST00000196130.5	chr5	-	2547	10	FSM	ENSMUSG00000029560.13	ENSMUST00000196130.5	2547	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTTTCCACGCTGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	140346170	140326055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946
ENSMUST00000196143.2	chr3	+	1657	7	FSM	ENSMUSG00000028140.14	ENSMUST00000196143.2	1657	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGGCTCCATTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	94350643	94358437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94354566_94354651_94357457
ENSMUST00000196173.2	chr5	-	421	1	FSM	ENSMUSG00000104882.2	ENSMUST00000196173.2	421	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAATAAGGATTAAACTCT	NA	NA	NA	NA	NA	NA	NA	NA	28065436	28065015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_28065000_28065400
ENSMUST00000196176.2	chr9	+	581	2	ISM	ENSMUSG00000032482.10	ENSMUST00000197850.5	7868	4	0	15852	0	-15852	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCCCTAAAGAGATCCCC	NA	NA	NA	NA	NA	NA	NA	NA	110074598	110075779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_110074763_110075362
ENSMUST00000196188.5	chr3	-	323	3	ISM	ENSMUSG00000062908.13	ENST00000370834.9	1248	10	494	13385	494	-13385	internal_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCAACTGGTAGGCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	153644311	153641941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_153642063_153643339_153643421_153644190
ENSMUST00000196390.2	chr5	+	1629	1	FSM	ENSMUSG00000105416.2	ENSMUST00000196390.2	1629	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTTTCTTGGTCATGA	NA	NA	NA	NA	NA	NA	NA	NA	43216597	43218226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_43216600_43218200
ENSMUST00000196397.5	chr5	-	2797	9	FSM	ENSMUSG00000005057.14	ENSMUST00000196397.5	2797	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCTCTCCTGTGGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	136273708	136247000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_136248007_136248495_136248668_136250701_136250911_136253008_136253177_136253258_136253351_136254057_136254150_136256220_136256323_136260506_136261241_136273486
ENSMUST00000196445.2	chr3	+	570	3	FSM	ENSMUSG00000104786.2	ENSMUST00000196445.2	570	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCAGTTTTGCTCACTAA	NA	NA	NA	NA	NA	NA	NA	NA	148694787	148709667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_148694990_148706606_148706772_148709464
ENSMUST00000196449.5	chr3	-	2532	5	FSM	ENSMUSG00000027962.15	ENSMUST00000196449.5	2532	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTCTTTTTTCTCATTAA	NA	NA	NA	NA	NA	NA	NA	NA	115923106	115915928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_115917443_115918031_115918299_115919603_115919925_115922181_115922458_115922952
ENSMUST00000196458.2	chr5	+	277	1	FSM	ENSMUSG00000106476.2	ENSMUST00000196458.2	277	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTGATGAACCCTCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	137431248	137431525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_137431200_137431500
ENSMUST00000196461.2	chr5	-	282	1	FSM	ENSMUSG00000106392.2	ENSMUST00000196461.2	282	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTTAGATTGGGCTACA	NA	NA	NA	NA	NA	NA	NA	NA	105137197	105136915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_105136900_105137200
ENSMUST00000196466.2	chr3	-	448	3	FSM	ENSMUSG00000104960.2	ENSMUST00000196466.2	448	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCCTGTTTCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	123302053	123301200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_123301310_123301465_123301512_123301760
ENSMUST00000196466.2-0	chr3	-	374	3	FSM	ENSMUSG00000104960.2	ENSMUST00000196466.2	448	3	74	0	3	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCCTGTTTCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	123301979	123301200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_123301310_123301465_123301512_123301760
ENSMUST00000196506.2	chr3	-	747	3	ISM	ENSMUSG00000027800.15	ENSMUST00000171384.8	2855	5	-236	7172	-236	-5299	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTATGTAACTGTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	57202546	57200203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_57200347_57200433_57200524_57202032
ENSMUST00000196566.5	chr5	-	1914	11	FSM	ENSMUSG00000029560.13	ENSMUST00000196566.5	1914	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGAGTGAGGAGGGGTTG	NA	NA	NA	NA	NA	NA	NA	NA	140368488	140326700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140368443
ENSMUST00000196629.2	chr5	+	2265	1	FSM	ENSMUSG00000097287.4	ENSMUST00000196629.2	2265	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGCTTCTTGCTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	143752065	143754330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_143752100_143754300
ENSMUST00000196667.5	chr5	-	675	7	NNC	ENSMUSG00000047215.15	novel	738	8	NA	NA	19	-14	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTATATATTGATTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	65548329	65545720	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_65545811_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288
ENSMUST00000196694.2	chr5	-	291	3	ISM	ENSMUSG00000029455.15	ENSMUST00000031411.15	3867	13	23112	1930	10009	-1930	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCCAACAAGATATACTGA	NA	NA	NA	NA	NA	NA	NA	NA	121708775	121706019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_121706087_121706988_121707104_121708666
ENSMUST00000196709.5	chr3	-	1382	11	FSM	ENSMUSG00000059743.13	ENSMUST00000196709.5	1382	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	89009195	89000894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89008227_89008444_89009168
ENSMUST00000196735.2	chr9	-	799	4	ISM	ENSMUSG00000032491.15	ENSMUST00000035069.14	1223	5	1130	373	1130	-373	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGGAGGATGCTCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	110452390	110450575	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_110450806_110450907_110451051_110451139_110451330_110452154
ENSMUST00000196735.2-0	chr9	-	1068	4	ISM	ENSMUSG00000032491.15	ENSMUST00000035069.14	1223	5	1234	0	1234	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	NA	NA	NA	NA	NA	NA	NA	NA	110452286	110450202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_110450806_110450907_110451051_110451139_110451330_110452154
ENSMUST00000196750.2	chr5	+	1272	4	FSM	ENSMUSG00000040118.16	ENSMUST00000196750.2	1272	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTCTTTGCTTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	16139908	16294020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_16140107_16217391_16217474_16230746_16230864_16293145
ENSMUST00000196810.2	chr5	+	993	1	FSM	ENSMUSG00000106339.2	ENSMUST00000196810.2	993	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATGAATAAGTCTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	16777948	16778941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_16777900_16778900
ENSMUST00000196849.2	chr3	-	388	1	FSM	ENSMUSG00000106313.2	ENSMUST00000196849.2	388	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAGAGCCATATCAAATG	NA	NA	NA	NA	NA	NA	NA	NA	132361543	132361155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_132361200_132361500
ENSMUST00000196908.5	chr3	-	1196	8	FSM	ENSMUSG00000028273.16	ENSMUST00000196908.5	1196	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACAATTGGTGTGCTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	142101379	142008981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_142009183_142009703_142009741_142010057_142010231_142017883_142018303_142020166_142020210_142058494_142058647_142097473_142097612_142101346
ENSMUST00000196916.2	chr3	-	622	1	FSM	ENSMUSG00000105944.2	ENSMUST00000196916.2	622	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	423	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTCCATGTTGGAGAGTT	NA	NA	NA	NA	NA	NA	NA	NA	107775959	107775337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_107775300_107776000
ENSMUST00000196956.5	chr3	-	1055	8	NNC	ENSMUSG00000038975.15	novel	1418	8	NA	NA	64	29	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAATTACTGCTGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	153617718	153613208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561
ENSMUST00000196971.2	chr3	+	1450	5	FSM	ENSMUSG00000028177.14	ENSMUST00000196971.2	1450	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGTCCAAAGCATCATT	NA	NA	NA	NA	NA	NA	NA	NA	157631347	157643992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_157631884_157632425_157632663_157633999_157634088_157642572_157642711_157643541
ENSMUST00000196981.5	chr9	+	1839	15	FSM	ENSMUSG00000032497.20	ENSMUST00000196981.5	1839	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGGATTTTGTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	110947180	111053290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_110947458_110948707_110948780_110970257_110970401_110990370_110990458_111017829_111017875_111019235_111019353_111022114_111022187_111028732_111028904_111034822_111034916_111043208_111043342_111044996_111045047_111048749_111048871_111051225_111051306_111052333_111052439_111053017
ENSMUST00000197020.2	chr5	+	1688	1	FSM	ENSMUSG00000104587.2	ENSMUST00000197020.2	1688	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAACAATAAAGAAATCAC	NA	NA	NA	NA	NA	NA	NA	NA	28782270	28783958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_28782300_28784000
ENSMUST00000197077.2	chr3	-	477	1	FSM	ENSMUSG00000104623.2	ENSMUST00000197077.2	477	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGACTCTGGCCAATGCCC	NA	NA	NA	NA	NA	NA	NA	NA	57625710	57625233	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_57625200_57625700
ENSMUST00000197082.5	chr5	+	1943	10	FSM	ENSMUSG00000058503.12	ENSMUST00000197082.5	1943	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTGTCTTTGTGTATC	NA	NA	NA	NA	NA	NA	NA	NA	3593832	3620238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609096_3609160_3609605_3609699_3614240_3614328_3615702_3615751_3618986
ENSMUST00000197111.2	chr3	-	419	4	ISM	ENSMUSG00000027679.14	ENSMUST00000120805.8	551	5	1130	30	1082	-30	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATCAGTGTCTTGGTATA	NA	NA	NA	NA	NA	NA	NA	NA	34134329	34131502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232
ENSMUST00000197129.2	chr3	+	208	1	FSM	ENSMUSG00000105233.2	ENSMUST00000197129.2	208	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTGCAGCTGGTGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	126241391	126241599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_126241400_126241600
ENSMUST00000197149.2	chr5	-	515	1	FSM	ENSMUSG00000106558.2	ENSMUST00000197149.2	515	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGCGTGCCAGTGTAGA	NA	NA	NA	NA	NA	NA	NA	NA	30000035	29999520	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_29999500_3e+07
ENSMUST00000197199.2	chr3	-	1575	1	FSM	ENSMUSG00000106251.2	ENSMUST00000197199.2	1575	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATACATATACATACACCAC	NA	NA	NA	NA	NA	NA	NA	NA	104735220	104733645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_104733600_104735200
ENSMUST00000197255.2	chr5	+	438	3	ISM	ENSMUSG00000008090.15	ENST00000510644.6	1807	7	-1	2907	-1	-2907	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTGCGGCTACAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	108842095	108851205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_108842399_108842903_108842985_108851151
ENSMUST00000197257.2	chr5	-	1386	1	FSM	ENSMUSG00000106607.2	ENSMUST00000197257.2	1386	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAGAATATAAAAATAA	NA	NA	NA	NA	NA	NA	NA	NA	52333097	52331711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_52331700_52333100
ENSMUST00000197361.5	chr3	-	329	4	FSM	ENSMUSG00000090733.7	ENSMUST00000197361.5	329	4	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	90120955	90119977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_90120048_90120240_90120352_90120499_90120609_90120916
ENSMUST00000197367.2	chr3	+	222	1	FSM	ENSMUSG00000104864.2	ENSMUST00000197367.2	222	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCAGGTTGAAGATAAGT	NA	NA	NA	NA	NA	NA	NA	NA	159197054	159197276	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_159197100_159197300
ENSMUST00000197370.5	chr3	-	655	3	FSM	ENSMUSG00000105837.5	ENSMUST00000197370.5	655	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGAACCCATTTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	129325758	129321115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_129321464_129324707_129324814_129325557
ENSMUST00000197379.2	chr5	-	645	1	FSM	ENSMUSG00000105044.2	ENSMUST00000197379.2	645	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGGCTACATAGAGAAACC	NA	NA	NA	NA	NA	NA	NA	NA	109982011	109981366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_109981400_109982000
ENSMUST00000197385.2	chr5	+	301	2	ISM	ENSMUSG00000040274.12	ENSMUST00000042410.5	2470	7	0	131532	0	-131532	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAGTGTCACGGACGGA	NA	NA	NA	NA	NA	NA	NA	NA	3394311	3440693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_3394600_3440680
ENSMUST00000197389.2	chr3	-	643	5	NIC	ENSMUSG00000028107.15	novel	2157	16	NA	NA	5968	-1932	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGCTGGAGCCACACTTA	NA	NA	NA	NA	NA	NA	NA	NA	95655844	95653096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655798
ENSMUST00000197407.5	chr5	+	3546	15	FSM	ENSMUSG00000028954.12	ENSMUST00000197407.5	3546	15	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCTGGTCTGACGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	24890529	24915374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_24891021_24894390_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ENSMUST00000197731.2	chr3	+	202	2	ISM	ENSMUSG00000028128.14	ENSMUST00000029771.13	1872	6	5837	3504	5837	-3504	internal_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGCAGTTTGAACAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	121523022	121525193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_121523204_121525172
ENSMUST00000197767.5	chr3	-	1092	7	FSM	ENSMUSG00000027944.14	ENSMUST00000197767.5	1092	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTAGTCTTGGTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	89905973	89902759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904873_89905044_89905311_89905834
ENSMUST00000197847.2	chr3	-	359	4	NNC	ENSMUSG00000054414.5	novel	9020	11	NA	NA	14665	-38792	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTCATGGCCATGGGCACC	NA	NA	NA	NA	NA	NA	NA	NA	115786380	115778505	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_-_115778624_115783660_115783788_115784375_115784464_115786354
ENSMUST00000197859.5	chr3	+	732	8	FSM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	189	2912	189	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATTACTGTTCCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	135144514	135171047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUST00000197880.5	chr5	-	2590	10	NNC	ENSMUSG00000029560.13	novel	2627	11	NA	NA	33	2	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTCCACGCTGCAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	140346137	140326053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341911_140343811_140343930_140345946
ENSMUST00000197889.2	chr3	+	2251	1	FSM	ENSMUSG00000106290.2	ENSMUST00000197889.2	2251	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTAAAGTGTGTGGCTAA	NA	NA	NA	NA	NA	NA	NA	NA	135566108	135568359	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_135566100_135568400
ENSMUST00000197935.2	chr5	+	584	1	FSM	ENSMUSG00000105303.2	ENSMUST00000197935.2	584	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGTTGCCACAGATGGCA	NA	NA	NA	NA	NA	NA	NA	NA	109621261	109621845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_109621300_109621800
ENSMUST00000197973.2	chr3	+	321	1	FSM	ENSMUSG00000105388.2	ENSMUST00000197973.2	321	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1199	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGATTTTGTTATGAAGAC	NA	NA	NA	NA	NA	NA	NA	NA	145584774	145585095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_145584800_145585100
ENSMUST00000197980.5	chr3	-	1807	14	FSM	ENSMUSG00000028188.14	ENSMUST00000197980.5	1807	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGACTGGCCTGTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	146199600	146162956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_146163243_146168939_146169011_146171663_146171752_146173860_146173960_146175379_146175559_146181010_146181137_146181948_146182058_146186882_146186965_146187521_146187616_146192954_146193175_146193266_146193321_146194401_146194520_146195565_146195673_146199426
ENSMUST00000198011.2	chr3	-	1786	1	FSM	ENSMUSG00000105676.2	ENSMUST00000198011.2	1786	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTCTGTGGCGCCTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	137570135	137568349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_137568300_137570100
ENSMUST00000198030.2	chr3	-	767	5	NNC	ENSMUSG00000027800.15	novel	2855	5	NA	NA	337	-32	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTTCAGTGTTTGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	57201973	57194936	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_-_57195192_57197109_57197291_57200200_57200347_57200433_57200524_57201878
ENSMUST00000198050.2	chr3	+	740	3	ISM	ENSMUSG00000027710.15	ENSMUST00000011492.15	3930	18	23255	1583	19526	336	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAAACCATGTATAAAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	36143382	36145419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_36143610_36144230_36144304_36144979
ENSMUST00000198051.5	chr3	+	2127	15	FSM	ENSMUSG00000027680.16	ENSMUST00000198051.5	2127	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTTGTTTTCAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	34074253	34123494	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34123065
ENSMUST00000198128.2	chr3	+	464	3	FSM	ENSMUSG00000001025.9	ENSMUST00000198128.2	464	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCATGTGTTCTGGCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	90520611	90521721	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_90520690_90521049_90521212_90521497
ENSMUST00000198140.5	chr9	+	1436	14	FSM	ENSMUSG00000025648.19	ENSMUST00000198140.5	3488	14	214	1838	78	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACCTCTGTCAGAGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	108821059	108859458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_108821181_108827926_108828044_108828180_108828278_108834639_108834707_108836351_108836427_108836759_108836817_108837416_108837539_108839516_108839725_108840225_108840373_108854114_108854220_108856587_108856718_108856812_108856876_108857961_108858027_108859396
ENSMUST00000198209.2	chrX	-	1579	6	NNC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	-29584	29952	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTAAGGTTCAAGAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	104919201	104895608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chrX_-_104895674_104896889_104896984_104899463_104899638_104900087_104900225_104911456_104911530_104918165
ENSMUST00000198271.5	chr5	+	1836	3	FSM	ENSMUSG00000044134.10	ENSMUST00000198271.5	2335	3	11	488	0	-455	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTTGGCTGTGGGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	121987057	121992207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_121987188_121989230_121989343_121990613
ENSMUST00000198277.5	chr9	+	439	3	ISM	ENSMUSG00000025648.19	ENST00000383734.6	1409	13	34	31121	34	-31121	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTTACAACCCATTTGC	NA	NA	NA	NA	NA	NA	NA	NA	108821015	108828337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108821181_108827926_108828044_108828180
ENSMUST00000198289.5	chr3	-	946	9	NIC	ENSMUSG00000028107.15	novel	2313	17	NA	NA	24	-3696	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGAAGCCCCCTGGCAC	NA	NA	NA	NA	NA	NA	NA	NA	95662150	95654860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95662069
ENSMUST00000198343.2	chr3	-	562	1	FSM	ENSMUSG00000105045.2	ENSMUST00000198343.2	562	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTCAGTTTCCTGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	144331725	144331163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_144331200_144331700
ENSMUST00000198448.5	chrX	-	1835	8	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	61	5447	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAATTATTTGTTAAACT	NA	NA	NA	NA	NA	NA	NA	NA	104972948	104920113	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104972705
ENSMUST00000198493.2	chr5	-	1032	6	FSM	ENSMUSG00000029092.10	ENSMUST00000198493.2	1032	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAACCTGCTTTGAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	45333035	45267970	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_45268181_45268993_45269105_45312239_45312408_45320641_45320800_45326707_45326945_45332887
ENSMUST00000198499.5	chr3	-	1314	8	FSM	ENSMUSG00000028007.14	ENSMUST00000198499.5	1314	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACAACTAAAAGCTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	117640357	117575821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_117576026_117594489_117594643_117623225_117623313_117626488_117626689_117630786_117630986_117632468_117632634_117633576_117633688_117640162
ENSMUST00000198626.2	chr3	-	1598	1	NIC	ENSMUSG00000074238.7	novel	2580	9	NA	NA	28647	-255	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGCATTAGGTTATGC	NA	NA	NA	NA	NA	NA	NA	NA	127602513	127600915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_127600900_127602500
ENSMUST00000198685.5	chr3	+	666	7	NNC	ENSMUSG00000078578.10	novel	2504	8	NA	NA	-22	-2215	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAAGTATGCAATTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	135144303	135168802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_+_135144460_135145421_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710
ENSMUST00000198699.2	chr3	+	1080	1	FSM	ENSMUSG00000069014.5	ENSMUST00000198699.2	1080	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAACAGAAACGGCTAC	NA	NA	NA	NA	NA	NA	NA	NA	54388880	54389960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_54388900_54390000
ENSMUST00000198720.2	chr5	+	837	6	FSM	ENSMUSG00000097145.6	ENSMUST00000198720.2	837	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAATCTCTCAATTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	52348054	52403238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_52348280_52350259_52350321_52352142_52352233_52354234_52354366_52369384_52369495_52403018
ENSMUST00000198730.2	chr5	-	681	1	FSM	ENSMUSG00000104664.2	ENSMUST00000198730.2	681	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATGTGTAAATGATTTGA	NA	NA	NA	NA	NA	NA	NA	NA	87518342	87517661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_87517700_87518300
ENSMUST00000198760.2	chr5	-	1067	1	FSM	ENSMUSG00000105454.2	ENSMUST00000198760.2	1067	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTAAAAAAAAGAAATAGT	NA	NA	NA	NA	NA	NA	NA	NA	48949308	48948241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_48948200_48949300
ENSMUST00000198782.2	chr3	-	855	7	FSM	ENSMUSG00000027944.14	ENSMUST00000198782.2	855	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTCTTAAACAGAGGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	89905696	89902931	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905631
ENSMUST00000198824.2	chr5	+	1178	2	FSM	ENSMUSG00000106164.2	ENSMUST00000198824.2	1178	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAATAAAAACAAAAAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	101851451	101853716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_101851977_101853063
ENSMUST00000198831.2	chr3	-	254	1	FSM	ENSMUSG00000106105.2	ENSMUST00000198831.2	254	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCCCTGATTGAAGATGA	NA	NA	NA	NA	NA	NA	NA	NA	104823479	104823225	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_104823200_104823500
ENSMUST00000198865.5	chr9	-	2201	16	FSM	ENSMUSG00000032492.15	ENSMUST00000198865.5	2201	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCCTGGGTCTCGAAACC	NA	NA	NA	NA	NA	NA	NA	NA	110576190	110551152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_110551703_110552653_110552696_110552777_110552920_110553466_110553562_110553794_110553862_110554180_110554242_110555510_110555665_110556037_110556234_110556478_110556574_110556745_110556865_110556965_110557077_110558662_110558798_110560605_110560709_110571293_110571414_110573798_110573856_110576036
ENSMUST00000198872.2	chr3	-	457	1	FSM	ENSMUSG00000105879.2	ENSMUST00000198872.2	457	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGACTTCTCATTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	53600299	53599842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_53599800_53600300
ENSMUST00000198878.2	chr3	+	2050	13	FSM	ENSMUSG00000028173.11	ENSMUST00000198878.2	2050	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	502	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTATTATTTCCGTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	159545373	159644300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_159545685_159578545_159578819_159602967_159603093_159607018_159607181_159612751_159612889_159615289_159615459_159616934_159617033_159617396_159617461_159619397_159619542_159620572_159620657_159629062_159629217_159639886_159640006_159644090
ENSMUST00000198900.2	chr5	-	520	3	ISM	ENSMUSG00000029434.13	ENST00000267199.9	1816	13	3405	32335	3405	-32335	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGCTGTGGCTTTACGGT	NA	NA	NA	NA	NA	NA	NA	NA	123707644	123701422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_123701664_123703021_123703139_123707482
ENSMUST00000198951.2	chr5	-	1998	2	ISM	ENSMUSG00000029213.12	ENSMUST00000013693.11	3895	5	7152	1451	7152	-1451	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATTTCAAGTTACTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	72318380	72315368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_72317237_72318250
ENSMUST00000199045.5	chr3	+	913	7	ISM	ENSMUSG00000028256.17	ENSMUST00000029920.15	2239	15	13996	4812	-3007	-2006	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACAGATGGCCTTTATTTA	NA	NA	NA	NA	NA	NA	NA	NA	144838376	144854838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675
ENSMUST00000199145.2	chr5	+	239	2	ISM	ENSMUSG00000037053.7	ENSMUST00000035390.7	1297	4	29	4922	9	-69	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCAGAGGGCCAGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	137979829	137983573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_137979883_137983387
ENSMUST00000199164.2	chr3	+	1407	3	FSM	ENSMUSG00000027806.10	ENSMUST00000199164.2	4659	3	2764	488	2764	-488	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTTTTCTTGGTCACA	NA	NA	NA	NA	NA	NA	NA	NA	58324904	58368653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_58325035_58366751_58366804_58367428
ENSMUST00000199306.2	chr5	-	922	4	NNC	ENSMUSG00000066278.7	novel	2522	4	NA	NA	20557	-1495	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTGCCCACCTGATTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	124149776	124144198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_124144802_124145671_124145755_124148750_124148923_124149712
ENSMUST00000199317.2	chr3	+	743	4	FSM	ENSMUSG00000087260.6	ENSMUST00000199317.2	743	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGTTCATTTCTGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	107186314	107191398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_107186430_107187185_107187248_107189224_107189343_107190950
ENSMUST00000199592.5	chr9	+	934	7	FSM	ENSMUSG00000054836.13	ENSMUST00000199592.5	1304	7	67	303	36	-303	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGCTGTGACCAGGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	110134307	110150088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_110134418_110139162_110139242_110141636_110141708_110143043_110143163_110144818_110145021_110148637_110148785_110149882
ENSMUST00000199823.2	chr5	+	204	1	FSM	ENSMUSG00000105031.2	ENSMUST00000199823.2	204	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAATCTTGCAGCTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	113905183	113905387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_113905200_113905400
ENSMUST00000199852.2	chr5	+	793	1	FSM	ENSMUSG00000104699.2	ENSMUST00000199852.2	793	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTCTCTAGGAGACATGC	NA	NA	NA	NA	NA	NA	NA	NA	3925361	3926154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_3925400_3926200
ENSMUST00000199916.2	chr14	-	438	4	FSM	ENSMUSG00000104788.2	ENSMUST00000199916.2	438	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATAGCAATGCTACAGG	NA	NA	NA	NA	NA	NA	NA	NA	52778333	52776108	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_52776259_52776852_52776907_52777944_52778083_52778237
ENSMUST00000200084.2	chr3	+	3063	1	FSM	ENSMUSG00000106427.2	ENSMUST00000200084.2	3063	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAATAAAATAA	NA	NA	NA	NA	NA	NA	NA	NA	98028903	98031966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_98028900_98032000
ENSMUST00000200117.2	chr9	+	777	1	FSM	ENSMUSG00000106208.2	ENSMUST00000200117.2	777	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGTGTCACTCATGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	109799500	109800277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_109799500_109800300
ENSMUST00000200157.5	chr5	+	796	5	FSM	ENSMUSG00000007987.13	ENSMUST00000200157.5	3071	5	52	2223	0	1059	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAAAGCTGCCCTGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	136937055	136942035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_136937125_136939977_136940055_136940155_136940246_136940542_136940746_136941678
ENSMUST00000200166.5	chr3	+	345	3	ISM	ENSMUSG00000027985.15	ENST00000510624.5	1422	11	1398	38439	1017	-38439	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATCCCGTCAGATGTCAA	NA	NA	NA	NA	NA	NA	NA	NA	130907462	130978393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_130907572_130909061_130909196_130978291
ENSMUST00000200216.5	chr3	-	2300	4	ISM	ENSMUSG00000028184.13	ENST00000674208.1	5097	21	130964	-626	-792	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACGTGCACTTTTATGTA	NA	NA	NA	NA	NA	NA	NA	NA	148529407	148521490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_148523565_148526608_148526662_148528590_148528688_148529331
ENSMUST00000200236.2	chr3	-	1716	4	FSM	ENSMUSG00000027983.14	ENSMUST00000200236.2	1716	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGGCTATGGACAGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	131096849	131086936	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_131087334_131089036_131089199_131091434_131092071_131096328
ENSMUST00000200250.5	chr3	-	690	6	ISM	ENSMUSG00000062908.13	ENST00000370834.9	1248	10	1359	2888	1359	-2888	internal_fragment	FALSE	canonical	NA	NA	NA	NA	323	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACTATGCCTCGATTGCA	NA	NA	NA	NA	NA	NA	NA	NA	153643446	153631444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339
ENSMUST00000200259.5	chr5	-	772	4	ISM	ENSMUSG00000015806.13	ENSMUST00000117425.8	1231	7	4577	207	4577	184	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTTTTAAATTCCATGT	NA	NA	NA	NA	NA	NA	NA	NA	45600938	45591601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778
ENSMUST00000200411.2	chr5	+	1566	1	FSM	ENSMUSG00000104951.2	ENSMUST00000200411.2	1566	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAGAAAGAAAGAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	123248758	123250324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_123248800_123250300
ENSMUST00000200544.2	chr3	+	399	2	ISM	ENSMUSG00000028121.9	ENSMUST00000029766.9	3311	12	45	103709	45	-103709	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGAAACATGCCTGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	122213471	122220131	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_122213833_122220093
ENSMUST00000200587.5	chr5	+	1026	4	ISM	ENSMUSG00000029178.15	ENSMUST00000165536.8	5221	6	189	9792	189	-5997	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGTGCTGTGGATGGC	NA	NA	NA	NA	NA	NA	NA	NA	64960919	64980452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_64961135_64974077_64974174_64979216_64979701_64980221
ENSMUST00000200657.5	chr5	-	1668	10	FSM	ENSMUSG00000035234.19	ENSMUST00000117364.8	1657	10	0	-11	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAATATCTTATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	100968806	100953057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_100953318_100953763_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
ENSMUST00000200692.4	chr5	+	1816	7	FSM	ENSMUSG00000029166.15	ENSMUST00000200692.4	1816	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGATTTCCTCAATTGA	NA	NA	NA	NA	NA	NA	NA	NA	30972097	31023403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_30972243_31019150_31019279_31019841_31019988_31020547_31020705_31021917_31022073_31022158_31022312_31022471
ENSMUST00000200714.4	chr16	+	2137	5	ISM	ENSMUSG00000052917.16	ENSMUST00000089362.9	4825	24	105015	1	105003	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGGACTGCTAGCAATGT	NA	NA	NA	NA	NA	NA	NA	NA	56000845	56010374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_56000942_56004509_56004554_56005123_56005193_56006421_56006573_56008597
ENSMUST00000200721.4	chr5	-	1657	5	FSM	ENSMUSG00000053134.14	ENSMUST00000200721.4	1657	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATATGACGTCTATAATA	NA	NA	NA	NA	NA	NA	NA	NA	31682612	31672665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_31673271_31675610_31675849_31677426_31677752_31679997_31680403_31682528
ENSMUST00000200744.4	chr5	-	1653	7	FSM	ENSMUSG00000107283.4	ENSMUST00000200744.4	1653	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAATTGTGTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	31311566	31298006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_31299195_31302043_31302097_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
ENSMUST00000200788.2	chr5	-	3390	1	FSM	ENSMUSG00000106694.2	ENSMUST00000200788.2	3390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAATCGTGTCATGATAT	NA	NA	NA	NA	NA	NA	NA	NA	130896678	130893288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_130893300_130896700
ENSMUST00000200833.4	chr5	-	1171	7	FSM	ENSMUSG00000107283.4	ENSMUST00000200833.4	1171	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTACATGCCTTCAATCCCA	NA	NA	NA	NA	NA	NA	NA	NA	31311537	31298439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_31299195_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
ENSMUST00000200864.4	chr5	-	878	8	FSM	ENSMUSG00000107283.4	ENSMUST00000200864.4	878	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACAAACATGTATATACCC	NA	NA	NA	NA	NA	NA	NA	NA	31311536	31298884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311434
ENSMUST00000200896.2	chr5	+	574	1	FSM	ENSMUSG00000106930.2	ENSMUST00000200896.2	574	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGGAGGCCTCAGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	93151689	93152263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_93151700_93152300
ENSMUST00000200899.4	chr5	-	474	4	NNC	ENSMUSG00000037373.13	novel	3595	7	NA	NA	402	-13035	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGGCAGCGGGTTTGAC	NA	NA	NA	NA	NA	NA	NA	NA	33431923	33418403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_33418498_33424226_33424382_33426785_33426979_33431891
ENSMUST00000200912.2	chr5	+	799	1	FSM	ENSMUSG00000106926.2	ENSMUST00000200912.2	799	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	276	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCACCCATTGTATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	82484697	82485496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_82484700_82485500
ENSMUST00000201011.2	chr16	+	914	6	FSM	ENSMUSG00000052917.16	ENSMUST00000201011.2	914	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTGCCTTGCTAGCC	NA	NA	NA	NA	NA	NA	NA	NA	55895842	55946783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_55895942_55902718_55902772_55917702_55917795_55931968_55932167_55944141_55944334_55946503
ENSMUST00000201015.4	chr11	+	1789	12	FSM	ENSMUSG00000042331.14	ENSMUST00000201015.4	1789	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTTGCTCCCAGTGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	61967824	62110410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_61968063_62019025_62019234_62022655_62022730_62023101_62023308_62037131_62037278_62038393_62038495_62042695_62042778_62047312_62047467_62052633_62052737_62096209_62096327_62102469_62102530_62110110
ENSMUST00000201023.2	chr15	+	1170	1	FSM	ENSMUSG00000106988.2	ENSMUST00000201023.2	1170	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	447	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTGCTGTCAGCTGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	62852496	62853666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_62852500_62853700
ENSMUST00000201026.2	chr6	-	409	3	NNC	ENSMUSG00000029840.9	novel	3960	4	NA	NA	89	-13023	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGCGTGAAATTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	35516734	35498863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_35498919_35499616_35499731_35516494
ENSMUST00000201035.2	chr5	+	1721	1	FSM	ENSMUSG00000107164.2	ENSMUST00000201035.2	1721	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCGTCTTAGTTACTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	149365325	149367046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_149365300_149367000
ENSMUST00000201117.4	chrX	+	552	6	FSM	ENSMUSG00000016308.13	ENST00000630695.2	1665	6	0	1113	0	-138	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAGAACAAAGCTGGCGCG	NA	NA	NA	NA	NA	NA	NA	NA	36138010	36146765	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_36138183_36138370_36138445_36138819_36138846_36145309_36145400_36146251_36146341_36146664
ENSMUST00000201117.4-0	chrX	+	1313	6	FSM	ENSMUSG00000016308.13	ENST00000630695.2	1665	6	0	352	0	-51	multi-exon	FALSE	canonical	NA	NA	NA	NA	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGAAGATCCTCTATTC	NA	NA	NA	NA	NA	NA	NA	NA	36138010	36147526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_36138183_36138370_36138445_36138819_36138846_36145309_36145400_36146251_36146341_36146664
ENSMUST00000201120.2	chr5	+	494	4	FSM	ENSMUSG00000029649.11	ENSMUST00000201120.2	3850	4	-192	3548	0	-3548	multi-exon	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCTGCCTCTGTCCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	147797270	147806325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_147797502_147799362_147799461_147805532_147805594_147806221
ENSMUST00000201125.4	chr5	+	1352	9	FSM	ENSMUSG00000006638.16	ENSMUST00000201125.4	1352	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGAGGTTCCCTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	31107409	31112435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_31107593_31110228_31110390_31110686_31110870_31111010_31111057_31111222_31111336_31111434_31111610_31111748_31111798_31111877_31112044_31112159
ENSMUST00000201200.2	chr5	-	376	2	ISM	ENSMUSG00000070733.14	ENSMUST00000094700.11	9852	60	97624	26309	97624	-26309	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGAGACATGGGGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	73207855	73204862	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_73205028_73207644
ENSMUST00000201226.2	chr5	+	864	3	ISM	ENSMUSG00000041147.11	ENST00000380152.8	7969	17	28164	-4	28164	4	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCCAGGCCCTTACGCCT	NA	NA	NA	NA	NA	NA	NA	NA	150490286	150492797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_150490595_150491071_150491234_150492403
ENSMUST00000201353.4	chr5	-	846	8	FSM	ENSMUSG00000107283.4	ENSMUST00000201353.4	846	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGACACGCATTTGTAATTA	NA	NA	NA	NA	NA	NA	NA	NA	31311496	31298859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311451
ENSMUST00000201414.5	chr5	+	1976	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	51	561	51	-90	multi-exon	TRUE	canonical	NA	NA	NA	NA	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGGTTGAGGCCTGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	129864112	129874651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
ENSMUST00000201415.4	chr5	-	883	3	FSM	ENSMUSG00000029126.8	ENSMUST00000201415.4	883	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGCAGTGCTGACTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	38316375	38295599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_38296217_38302052_38302164_38316220
ENSMUST00000201469.4	chr5	+	4892	13	FSM	ENSMUSG00000039156.20	ENSMUST00000201469.4	4892	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTGTGGTTTTTGCTAG	NA	NA	NA	NA	NA	NA	NA	NA	54155906	54278399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_54156377_54210717_54210849_54232621_54232737_54259916_54260029_54260914_54261031_54261734_54261913_54262562_54262741_54267044_54267213_54267457_54267482_54267878_54267980_54268213_54268453_54273260_54273535_54275613
ENSMUST00000201481.2	chr5	+	495	4	ISM	ENSMUSG00000029141.17	ENSMUST00000201858.4	2109	8	4961	1832	4680	-1832	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	31689316	31692334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31689378_31689787_31689928_31691388_31691550_31692201
ENSMUST00000201487.4	chr5	+	286	3	ISM	ENSMUSG00000052139.19	ENSMUST00000114515.9	1497	13	-24	353819	-24	-353711	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAGACGTTAAAATGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	31855349	31888372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31855422_31859169_31859322_31888310
ENSMUST00000201488.2	chr7	-	1342	1	FSM	ENSMUSG00000107383.2	ENSMUST00000201488.2	1342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTCTTGCCAGTCGCCT	NA	NA	NA	NA	NA	NA	NA	NA	116425086	116423744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_116423700_116425100
ENSMUST00000201674.2	chr5	+	470	6	ISM	ENSMUSG00000023104.10	ENSMUST00000023867.8	4995	11	67	10668	67	-10668	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCCCTCAGGAGAACCAT	NA	NA	NA	NA	NA	NA	NA	NA	134611610	134619991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972
ENSMUST00000201768.2	chr5	-	459	1	FSM	ENSMUSG00000106831.2	ENSMUST00000201768.2	459	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCGATCAGATCATCGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	76380917	76380458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_76380500_76380900
ENSMUST00000201775.2	chr6	-	737	2	FSM	ENSMUSG00000106874.2	ENSMUST00000201775.2	737	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCCCGTCTCTTGTTAAC	NA	NA	NA	NA	NA	NA	NA	NA	18846762	18845908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_18846507_18846623
ENSMUST00000201779.2	chrX	+	1551	2	FSM	ENSMUSG00000073069.3	ENSMUST00000201779.2	1551	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCATTAGAAAGTAAATCAT	NA	NA	NA	NA	NA	NA	NA	NA	90375295	90376966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_90375345_90375464
ENSMUST00000201818.2	chr6	+	894	3	FSM	ENSMUSG00000107230.2	ENSMUST00000201818.2	894	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAATGAAGGTGTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	85938604	85978908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_85938994_85942613_85943003_85978792
ENSMUST00000201863.4	chr1	+	883	5	FSM	ENSMUSG00000026278.15	ENSMUST00000201863.4	883	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGGCCTCCAGTACCTAC	NA	NA	NA	NA	NA	NA	NA	NA	93613423	93622932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_93613577_93614128_93614392_93616878_93617008_93621781_93621946_93622758
ENSMUST00000201878.2	chr6	+	278	1	FSM	ENSMUSG00000107389.2	ENSMUST00000201878.2	278	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAATGGTAAAGCCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	126967558	126967836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_126967600_126967800
ENSMUST00000201882.4	chr7	+	1497	15	FSM	ENSMUSG00000002963.18	ENST00000600910.5	1447	15	-26	-24	-26	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCCATCTTGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	44506817	44512074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511617_44511706_44511789_44511852_44511922
ENSMUST00000201942.4	chr5	+	643	8	ISM	ENSMUSG00000064037.14	ENSMUST00000076949.13	3144	14	53	9374	41	5814	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCGCTGTCAGCACATTG	NA	NA	NA	NA	NA	NA	NA	NA	31652137	31660874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734
ENSMUST00000202027.2	chr5	-	458	6	NNC	ENSMUSG00000045102.13	novel	2736	24	NA	NA	44106	-25307	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGCCATAGGGAAGGACT	NA	NA	NA	NA	NA	NA	NA	NA	34263087	34190089	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_34190173_34234440_34234556_34236259_34236338_34237245_34237304_34261241_34261308_34263029
ENSMUST00000202031.4	chr5	-	1864	4	FSM	ENSMUSG00000041132.12	ENSMUST00000202031.4	1864	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATATTGGGTTTTCCATT	NA	NA	NA	NA	NA	NA	NA	NA	150500456	150495111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_150496458_150497464_150497542_150499714_150499804_150500104
ENSMUST00000202133.4	chr5	-	685	6	Fusion	ENSMUSG00000066551.13_ENSMUSG00000097191.3	novel	2838	5	NA	NA	-426	-148	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAGGAGGAAGAAGAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	149121299	148985602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Fusion_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_149118808_149118846_149121257
ENSMUST00000202135.2	chr5	-	660	2	ISM	ENSMUSG00000037373.13	ENSMUST00000202868.4	2436	10	25742	414	25731	-143	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTCAGCAAGTCAGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	33406594	33405511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_33406028_33406450
ENSMUST00000202229.2	chr5	-	767	2	FSM	ENSMUSG00000085237.3	ENSMUST00000202229.2	767	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTGTTCCGGTCAGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	148933319	148891433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_148892012_148933130
ENSMUST00000202241.4	chr5	-	903	8	FSM	ENSMUSG00000107283.4	ENSMUST00000202241.4	903	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCATGCTATGGGGTTG	NA	NA	NA	NA	NA	NA	NA	NA	31311572	31298801	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_31299195_31302043_31302097_31302583_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
ENSMUST00000202258.4	chr5	-	1884	12	FSM	ENSMUSG00000029405.17	ENSMUST00000202258.4	1884	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGCCCACTGAGTTCA	NA	NA	NA	NA	NA	NA	NA	NA	92231517	92202358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ENSMUST00000202273.4	chr5	+	660	5	ISM	ENSMUSG00000029141.17	ENST00000419995.2	606	6	3372	-254	3372	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGTGATGATCATTCCC	NA	NA	NA	NA	NA	NA	NA	NA	31701126	31711386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31701258_31703523_31703611_31705957_31706026_31708056_31708127_31711082
ENSMUST00000202294.4	chr5	-	1539	10	FSM	ENSMUSG00000029147.12	ENSMUST00000202294.4	1868	10	0	329	0	-325	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTATGAGGTGTGCAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	31377909	31360336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_31360629_31360915_31361019_31361373_31361504_31361796_31362032_31362341_31362474_31363381_31363477_31364906_31365040_31365356_31365443_31365730_31365801_31377646
ENSMUST00000202318.4	chr5	+	641	7	ISM	ENSMUSG00000029146.15	ENSMUST00000031029.15	2018	15	2146	1650	2146	-1650	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGTTGTGGTGAGCGC	NA	NA	NA	NA	NA	NA	NA	NA	31352716	31354594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513
ENSMUST00000202320.2	chr5	-	375	1	FSM	ENSMUSG00000107261.2	ENSMUST00000202320.2	375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTTGCTAGCCGCCACT	NA	NA	NA	NA	NA	NA	NA	NA	91885938	91885563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_91885600_91885900
ENSMUST00000202339.2	chr5	+	228	3	ISM	ENSMUSG00000029223.13	ENST00000503431.5	688	8	7403	0	7403	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAACCAGCCGATCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	66841026	66844281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_66841099_66842115_66842175_66844184
ENSMUST00000202501.2	chr5	+	692	4	ISM	ENSMUSG00000029166.15	ENST00000402218.1	992	7	-86	1845	-86	-1845	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTGATCAGATCTTCAACA	NA	NA	NA	NA	NA	NA	NA	NA	31011142	31020702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31011406_31019150_31019279_31019841_31019988_31020547
ENSMUST00000202567.2	chr5	-	1869	8	FSM	ENSMUSG00000045302.14	ENSMUST00000202567.2	1869	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCAGTCCTCTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	31117624	31112386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_31113082_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
ENSMUST00000202692.5	chr8	+	1764	4	FSM	ENSMUSG00000058748.10	ENSMUST00000202692.5	2364	4	0	600	0	251	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTATAGTCAAGCCATTAC	NA	NA	NA	NA	NA	NA	NA	NA	4663166	4679631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_4663279_4675839_4675967_4676163_4676225_4678167
ENSMUST00000202747.4	chr3	+	3434	16	FSM	ENSMUSG00000027630.14	ENSMUST00000202747.4	4209	16	154	621	154	162	multi-exon	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTACAAAGGTTCACCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	22131044	22266294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_22131119_22203105_22203173_22233366_22233470_22242529_22242676_22243931_22244155_22245078_22245212_22245555_22245698_22246183_22246248_22246333_22246432_22247271_22247333_22254483_22254606_22254753_22254829_22257260_22257389_22257990_22258157_22263675_22263778_22264564
ENSMUST00000202752.2	chr5	+	789	7	ISM	ENSMUSG00000029162.16	ENST00000260599.10	1243	8	85	457	25	-396	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCACCGCCCCGAGTAG	NA	NA	NA	NA	NA	NA	NA	NA	31079201	31088137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31079352_31082082_31082200_31084031_31084167_31085786_31085860_31086864_31087012_31087891_31087981_31088059
ENSMUST00000202768.2	chr5	-	748	1	FSM	ENSMUSG00000072688.3	ENSMUST00000202768.2	748	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	117457309	117456561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_117456600_117457300
ENSMUST00000202769.2	chr5	+	1408	9	FSM	ENSMUSG00000062077.15	ENSMUST00000202769.2	1408	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGCTCCTTTTGCTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	31274077	31294974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_31274422_31288385_31288559_31289331_31289504_31291393_31291490_31293386_31293621_31294096_31294120_31294231_31294357_31294464_31294558_31294826
ENSMUST00000202812.2	chrX	+	719	5	FSM	ENSMUSG00000016308.13	ENSMUST00000202812.2	719	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTATCTCATCTCCAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	36138305	36147039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_36138445_36138819_36138846_36145309_36145400_36146251_36146341_36146664
ENSMUST00000202820.4	chr5	-	539	4	ISM	ENSMUSG00000037373.13	ENSMUST00000202962.4	3595	7	5345	11276	5345	-11276	internal_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGACTCCACCCTGTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	33426980	33416644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_33416689_33418352_33418498_33424226_33424382_33426785
ENSMUST00000202887.2	chr5	+	1197	1	FSM	ENSMUSG00000107331.2	ENSMUST00000202887.2	1197	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAAACTGAGCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	73468706	73469903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_73468700_73469900
ENSMUST00000202991.4	chrX	+	715	6	FSM	ENSMUSG00000016308.13	ENSMUST00000202991.4	715	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGTTTCTGTCTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	36137983	36146903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_36138183_36138363_36138445_36138819_36138846_36145309_36145400_36146260_36146341_36146664
ENSMUST00000203077.3	chr6	+	915	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	319	383	259	-86	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCCAGAGGCCTTCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	67244313	67260912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUST00000203121.2	chr6	+	1142	1	FSM	ENSMUSG00000107994.2	ENSMUST00000203858.2	1813	1	27	644	27	-644	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGGCCCACCGTAAACT	NA	NA	NA	NA	NA	NA	NA	NA	115652955	115654097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_115653000_115654100
ENSMUST00000203161.2	chr6	+	280	4	ISM	ENSMUSG00000024104.12	ENSMUST00000036759.11	4307	31	12516	38216	12516	-38216	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCCTTTGGCTCTAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	116197514	116201431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_116197606_116198776_116198859_116200156_116200214_116201381
ENSMUST00000203258.2	chr6	+	641	5	ISM	ENSMUSG00000001517.15	ENST00000627656.2	3299	7	4325	1904	1582	-1095	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTTCCCTTGCCTCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	128344249	128349834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_128344402_128346256_128346449_128347919_128348049_128349493_128349567_128349739
ENSMUST00000203258.2-0	chr6	+	798	5	ISM	ENSMUSG00000001517.15	ENST00000627656.2	3299	7	4403	1669	1660	-860	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGAGGCCTATCAAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	128344327	128350069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_128344402_128346256_128346449_128347919_128348049_128349493_128349567_128349739
ENSMUST00000203320.2	chr3	+	815	5	ISM	ENSMUSG00000025758.11	ENSMUST00000167556.7	2769	16	-200	11132	0	-11132	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGGAAGACCACCTTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	40754488	40759720	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_40754719_40755434_40755531_40756219_40756316_40756392_40756508_40759442
ENSMUST00000203338.2	chr6	+	229	1	FSM	ENSMUSG00000107968.2	ENSMUST00000203338.2	229	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGTTTACAGGTGACTT	NA	NA	NA	NA	NA	NA	NA	NA	65127980	65128209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_65128000_65128200
ENSMUST00000203422.2	chr6	-	585	2	NIC	ENSMUSG00000030122.13	novel	1149	5	NA	NA	3272	-7	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAACCCGTCTCCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	124891637	124890650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_124891196_124891597
ENSMUST00000203436.3	chr6	+	1061	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203436.3	1667	8	347	259	259	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	67244313	67261031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUST00000203467.3	chr8	-	2729	7	NNC	ENSMUSG00000038506.14	novel	2748	7	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	NA	NA	NA	NA	NA	NA	NA	13337830	13305963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_-_13307977_13308946_13309044_13311384_13311468_13321589_13321721_13328516_13328686_13330916_13331126_13337803
ENSMUST00000203566.3	chr7	+	338	3	FSM	ENSMUSG00000068566.14	ENSMUST00000203566.3	4027	3	0	3689	0	-1532	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGACTACAACGTCATCCTC	NA	NA	NA	NA	NA	NA	NA	NA	3339099	3345269	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_3339318_3341727_3341816_3345237
ENSMUST00000203578.3	chr6	+	1323	5	FSM	ENSMUSG00000079426.14	ENSMUST00000203578.3	1323	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTGTGCTCTGTGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	113355107	113366613	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_113355170_113358923_113359036_113361042_113361139_113362450_113362622_113365731
ENSMUST00000203611.2	chr14	+	623	1	FSM	ENSMUSG00000107911.2	ENSMUST00000203611.2	623	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCATGCATAGTGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	26286920	26287543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_26286900_26287500
ENSMUST00000203701.2	chr6	+	2109	1	FSM	ENSMUSG00000107696.2	ENSMUST00000203701.2	2109	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATTGTGTCACATCATTT	NA	NA	NA	NA	NA	NA	NA	NA	101515713	101517822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_101515700_101517800
ENSMUST00000203758.2	chr6	-	321	2	ISM	ENSMUSG00000051169.15	ENST00000433535.6	927	6	1490	199	1490	-5	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTCTCAACAGTAGACT	NA	NA	NA	NA	NA	NA	NA	NA	113393413	113392508	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113392684_113393267
ENSMUST00000203795.2	chr6	-	182	1	FSM	ENSMUSG00000107863.2	ENSMUST00000203795.2	182	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCACCTGGTTCTCCATC	NA	NA	NA	NA	NA	NA	NA	NA	60439099	60438917	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_60438900_60439100
ENSMUST00000203816.2	chr6	-	906	3	FSM	ENSMUSG00000057841.6	ENSMUST00000203816.2	906	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	115785309	115782472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_115782650_115783946_115784129_115784762
ENSMUST00000203819.2	chr3	-	1106	1	FSM	ENSMUSG00000107524.2	ENSMUST00000203819.2	1106	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAAGATTCTGGTTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	40819488	40818382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_40818400_40819500
ENSMUST00000203838.2	chr6	+	405	1	FSM	ENSMUSG00000107751.2	ENSMUST00000203838.2	405	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAGTCCACTATGAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	108858964	108859369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_108859000_108859400
ENSMUST00000203883.3	chr3	-	881	6	FSM	ENSMUSG00000028141.13	ENSMUST00000203883.3	881	6	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	1503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTTTGCTGTTTCTTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	94351140	94340693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_94340948_94341770_94341857_94342277_94342454_94343262_94343341_94343341_94343433_94350944
ENSMUST00000203886.2	chr6	-	826	5	NNC	ENSMUSG00000033216.10	novel	2679	7	NA	NA	6692	-40050	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACCTTTCCCGAGAGTACC	NA	NA	NA	NA	NA	NA	NA	NA	88416817	88274904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_88275219_88332464_88332630_88335527_88335625_88353185_88353394_88416775
ENSMUST00000203929.3	chr7	+	795	1	FSM	ENSMUSG00000107470.3	ENSMUST00000203929.3	795	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAAGGTGGATGCGGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	3230841	3231636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_3230800_3231600
ENSMUST00000203954.3	chr6	-	1703	13	NIC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	-2	3	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	51446827	51438100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
ENSMUST00000204008.3	chr6	+	713	6	FSM	ENSMUSG00000097048.8	ENSMUST00000204008.3	713	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGTATTTTTAAATTTA	NA	NA	NA	NA	NA	NA	NA	NA	86503228	86541431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_86503265_86504872_86504957_86509174_86509290_86527898_86528097_86540413_86540520_86541257
ENSMUST00000204076.2	chr6	+	310	1	FSM	ENSMUSG00000108231.2	ENSMUST00000204076.2	310	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACCAATCTTTAACTTCT	NA	NA	NA	NA	NA	NA	NA	NA	66723000	66723310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_66723000_66723300
ENSMUST00000204083.3	chr6	-	1915	5	FSM	ENSMUSG00000030203.18	ENST00000228862.3	2884	5	330	639	330	-639	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTATATGTACATACATA	NA	NA	NA	NA	NA	NA	NA	NA	134738063	134694777	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_134696015_134697456_134697581_134702798_134702959_134735581_134735721_134737808
ENSMUST00000204084.3	chr6	-	409	4	FSM	ENSMUSG00000029632.8	ENSMUST00000204084.3	409	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGTGTCACTATTTAATGC	NA	NA	NA	NA	NA	NA	NA	NA	11907392	11900370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_11900591_11905200_11905262_11906018_11906077_11907322
ENSMUST00000204090.2	chr6	-	766	2	ISM	ENSMUSG00000004980.17	ENSMUST00000090002.10	1662	12	5685	1676	5612	-40	internal_fragment	FALSE	canonical	NA	NA	NA	NA	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTACATTTATGATTTAA	NA	NA	NA	NA	NA	NA	NA	NA	51441140	51439779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_51440474_51441068
ENSMUST00000204206.2	chr6	+	665	5	ISM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	4868	2491	4808	-2194	internal_fragment	FALSE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAATTTTAAGATGCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	67248862	67258804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631
ENSMUST00000204224.3	chr6	-	3367	11	FSM	ENSMUSG00000061838.8	ENSMUST00000204224.3	3367	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCAGTAGTGTGGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	95695781	95449989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
ENSMUST00000204254.2	chr6	+	1147	2	FSM	ENSMUSG00000051256.11	ENSMUST00000204254.2	1147	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTAAGACTGTCCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	113419570	113425170	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_113419766_113424218
ENSMUST00000204285.3	chr8	+	3009	4	FSM	ENSMUSG00000091764.4	ENSMUST00000204285.3	4333	4	0	1324	0	-1324	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTGGCCAATAAATTAAAG	NA	NA	NA	NA	NA	NA	NA	NA	70107141	70118308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_70107247_70111912_70112040_70112223_70112285_70115592
ENSMUST00000204293.3	chr6	+	1336	8	FSM	ENSMUSG00000036371.7	ENSMUST00000204293.3	1336	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	67243993	67261031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUST00000204341.3	chr3	-	1344	6	FSM	ENSMUSG00000104301.4	ENSMUST00000204341.3	1344	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATACGAGTTCTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	75359125	75304174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_75304409_75336595_75336745_75338387_75338556_75357199_75357375_75358125_75358303_75358684
ENSMUST00000204436.3	chr6	+	584	3	FSM	ENSMUSG00000053012.18	ENSMUST00000204436.3	1687	3	24	1079	24	-1078	multi-exon	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGGTTACCAGCTCATGA	NA	NA	NA	NA	NA	NA	NA	NA	71248684	71261224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_71248825_71259134_71259302_71260947
ENSMUST00000204671.3	chr6	-	744	5	NNC	ENSMUSG00000030122.13	novel	1149	5	NA	NA	-2157	-83	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	107	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGTTGGGGCCAAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	124897066	124890726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124897001
ENSMUST00000204696.3	chr6	+	363	3	FSM	ENSMUSG00000029920.10	ENSMUST00000204696.3	734	3	43	328	43	-256	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTGGATGGCTTTGAACT	NA	NA	NA	NA	NA	NA	NA	NA	65019862	65020859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_65019946_65020189_65020430_65020819
ENSMUST00000204714.2	chr6	-	452	5	FSM	ENSMUSG00000029632.8	ENSMUST00000204714.2	452	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGCGTGTCACTATTTA	NA	NA	NA	NA	NA	NA	NA	NA	11907496	11900374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_11900591_11905200_11905262_11906018_11906108_11907322_11907384_11907471
ENSMUST00000204719.3	chr6	+	750	7	NNC	ENSMUSG00000068328.10	novel	1769	12	NA	NA	215	-1374	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTAGTGAACAGGGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	83031716	83033415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_+_83031814_83031891_83031995_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348
ENSMUST00000204734.2	chr6	-	1942	1	FSM	ENSMUSG00000107951.2	ENSMUST00000204734.2	1942	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	339	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTAAGAAGAAGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	75275042	75273100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_75273100_75275000
ENSMUST00000204737.2	chr6	-	367	1	FSM	ENSMUSG00000107747.2	ENSMUST00000204737.2	367	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAAGGCCCGGGCAGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	96010350	96009983	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_96010000_96010400
ENSMUST00000204765.3	chr6	+	1738	12	FSM	ENSMUSG00000002871.15	ENSMUST00000204765.3	1738	12	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTGTGAGCTGATGCCT	NA	NA	NA	NA	NA	NA	NA	NA	88879314	88889213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_88879513_88882930_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887244_88887322_88887384_88887529_88887633_88887778_88887860_88888664
ENSMUST00000204881.3	chr6	-	751	9	NNC	ENSMUSG00000030056.9	novel	5837	11	NA	NA	60	-2413	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGGCATGGGTCCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	87815720	87798489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_87798612_87799321_87799445_87802352_87802467_87804565_87804679_87810623_87810667_87811409_87811476_87811924_87811977_87812709_87812733_87815625
ENSMUST00000204890.3	chr6	-	1614	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204890.3	1614	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	NA	NA	NA	NA	NA	NA	NA	NA	87828012	87820063	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822655_87822776_87827885
ENSMUST00000204978.3	chr6	-	610	4	FSM	ENSMUSG00000029632.8	ENSMUST00000204978.3	610	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	4500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTTGAATTTCTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	11907482	11900290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_11900591_11905200_11905262_11906018_11906108_11907322
ENSMUST00000205087.2	chr6	-	427	6	NIC	ENSMUSG00000029780.15	novel	1676	9	NA	NA	208	-2391	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGAAGAAGTTATCCGGC	NA	NA	NA	NA	NA	NA	NA	NA	56900709	56861775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56900656
ENSMUST00000205156.3	chr6	+	1882	6	FSM	ENSMUSG00000030208.16	ENSMUST00000205156.3	2911	6	0	1029	0	814	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATATAACATCTAAATGC	NA	NA	NA	NA	NA	NA	NA	NA	135339542	135359142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_135339706_135339901_135340101_135354175_135354287_135356898_135356996_135357098_135357240_135357971
ENSMUST00000205201.2	chr6	-	1145	2	FSM	ENSMUSG00000107950.2	ENSMUST00000205201.2	1145	2	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGACTGAGCAGGTGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	133740025	133738407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_133739354_133739826
ENSMUST00000205287.2	chr7	+	1375	6	FSM	ENSMUSG00000035585.17	ENSMUST00000205287.2	1375	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTGTTCTTTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	3696761	3703886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3698711_3698833_3703526
ENSMUST00000205301.2	chr7	-	593	5	ISM	ENSMUSG00000009687.15	ENSMUST00000161805.8	1166	8	3901	8	3901	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGCCTCTGTCTTCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	30737363	30732154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30737245
ENSMUST00000205338.2	chr7	-	2071	5	FSM	ENSMUSG00000056383.11	ENSMUST00000205338.2	2071	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	41042803	41023213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_41024799_41025914_41025973_41026169_41026297_41037531_41037680_41042650
ENSMUST00000205370.2	chr6	+	1560	1	FSM	ENSMUSG00000108591.2	ENSMUST00000205370.2	1560	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGTGGAGTCTGGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	72416033	72417593	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_72416000_72417600
ENSMUST00000205377.2	chr19	-	378	6	NNC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	-370	-1642	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCACTGGGGAGCGTAC	NA	NA	NA	NA	NA	NA	NA	NA	8690719	8686671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690229_8690268_8690705
ENSMUST00000205379.2	chr9	+	4001	12	FSM	ENSMUSG00000032384.17	ENSMUST00000205379.2	4001	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCCAGGAAATGGTGGCAA	NA	NA	NA	NA	NA	NA	NA	NA	65816205	65949188	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_65816451_65865610_65866004_65880760_65880802_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65939520_65939628_65946858
ENSMUST00000205406.2	chr17	-	714	4	FSM	ENSMUSG00000118642.2	ENSMUST00000205406.2	714	4	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGGCCTCACTAAACCAT	NA	NA	NA	NA	NA	NA	NA	NA	40159718	40158993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_40159024_40159025_40159488_40159492_40159526_40159529
ENSMUST00000205428.2	chr7	+	1945	9	FSM	ENSMUSG00000054342.9	ENSMUST00000205428.2	1945	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	447	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACAGCAGCTGCCATTT	NA	NA	NA	NA	NA	NA	NA	NA	24069687	24084630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_24070021_24074096_24074193_24076707_24077130_24078558_24078695_24081076_24081188_24081586_24081706_24081896_24081967_24083433_24083608_24084146
ENSMUST00000205568.2	chr7	-	2650	6	FSM	ENSMUSG00000030678.8	ENSMUST00000205568.2	2650	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGAGTTCCTAAGTTAT	NA	NA	NA	NA	NA	NA	NA	NA	126625698	126621301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126622341_126622653_126622879_126623615_126623788_126624047_126624112_126624475_126625327_126625399
ENSMUST00000205582.2	chr7	-	1279	8	FSM	ENSMUSG00000108606.2	ENSMUST00000205582.2	1279	8	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGATTGGGTTGAGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	25728331	25704029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_25704204_25714485_25714588_25714740_25714966_25717820_25717938_25718367_25718570_25720514_25720674_25727886_25728031_25728175
ENSMUST00000205657.2	chr7	+	1005	7	FSM	ENSMUSG00000063065.14	ENST00000395202.5	1005	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAACAGACACCCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	126358822	126364016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126358991_126359902_126360086_126362206_126362397_126362569_126362687_126362912_126363028_126363705_126363816_126363894
ENSMUST00000205708.2	chr7	-	641	1	FSM	ENSMUSG00000108528.2	ENSMUST00000205708.2	641	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTTCTAGCGCAGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	95852743	95852102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_95852100_95852700
ENSMUST00000205784.2	chr7	-	2546	2	ISM	ENSMUSG00000042797.10	ENSMUST00000206389.2	3737	3	9236	236	9236	-236	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGGAAAGGGTTAGGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	97378260	97373448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_97375912_97378177
ENSMUST00000205786.2	chr7	-	477	4	NIC	ENSMUSG00000030697.8	novel	1400	8	NA	NA	3930	-291	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCCCCAGCCCCTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	126387582	126385330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_126385464_126385543_126385734_126386391_126386519_126387555
ENSMUST00000205822.2	chr7	+	2969	14	FSM	ENSMUSG00000030539.14	ENSMUST00000205822.2	3760	14	95	696	95	-696	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGACTGGACTATTCTACCT	NA	NA	NA	NA	NA	NA	NA	NA	79848283	79875463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_79848519_79862543_79862708_79863010_79863074_79865371_79865471_79866076_79866189_79866477_79866592_79866695_79866848_79868630_79868813_79868933_79869085_79869868_79870080_79870189_79870306_79870535_79870703_79873681_79873765_79874343
ENSMUST00000205830.2	chr7	+	805	5	FSM	ENSMUSG00000030682.5	ENSMUST00000205830.2	805	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCACTATCTCTTTAATC	NA	NA	NA	NA	NA	NA	NA	NA	126576024	126578993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126576225_126577433_126577588_126578086_126578169_126578493_126578576_126578706
ENSMUST00000205874.2	chr7	-	1907	6	FSM	ENSMUSG00000063047.10	ENSMUST00000205874.2	1907	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTCATCATGTGACC	NA	NA	NA	NA	NA	NA	NA	NA	27678564	27658559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_27660056_27671047_27671147_27673143_27673271_27674177_27674231_27676176_27676259_27678514
ENSMUST00000206019.2	chr7	+	2299	2	FSM	ENSMUSG00000055652.15	ENSMUST00000206019.2	2299	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGGCTGAAGGAGAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	75498088	75517239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_75498233_75515084
ENSMUST00000206053.2	chr7	-	606	3	FSM	ENSMUSG00000096145.3	ENSMUST00000206053.2	606	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTGTAGCATATGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	127494423	127492236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_127492664_127493676_127493787_127494354
ENSMUST00000206084.2	chr7	-	772	7	FSM	ENSMUSG00000030538.16	ENSMUST00000206084.2	772	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	NA	NA	NA	NA	NA	NA	NA	NA	79882313	79876906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878282_79880063_79880173_79882091_79882127_79882257
ENSMUST00000206101.2	chr7	+	589	5	NIC	ENSMUSG00000030451.17	novel	14403	91	NA	NA	3955	-1	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGATCTGAATGCTTATGT	NA	NA	NA	NA	NA	NA	NA	NA	55807477	55815025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_+_55807533_55809121_55809221_55813489_55813659_55813756_55813883_55814885
ENSMUST00000206155.2	chr19	+	495	10	FSM	ENSMUSG00000108414.2	ENSMUST00000206155.2	605	10	12	98	12	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTACCACATTGTTAAC	NA	NA	NA	NA	NA	NA	NA	NA	8700850	8703709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_8700871_8701504_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUST00000206222.2	chr7	-	323	3	ISM	ENSMUSG00000003380.12	ENSMUST00000205871.2	986	4	780	126	730	-13	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	234	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGCTGTCCCATCTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	24671283	24669311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_24669435_24669511_24669614_24671185
ENSMUST00000206228.2	chr7	-	551	5	ISM	ENSMUSG00000030516.15	ENST00000356107.11	6951	29	97	46361	97	-45909	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTATCTTTTACGTTCA	NA	NA	NA	NA	NA	NA	NA	NA	65177444	64992364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_64992468_64993362_64993488_65004579_65004637_65162946_65163080_65177311
ENSMUST00000206262.2	chr6	-	701	5	NIC	ENSMUSG00000056305.5	novel	1687	12	NA	NA	11	-17195	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAGACAAGTCACCCTC	NA	NA	NA	NA	NA	NA	NA	NA	72319951	72313242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_72313469_72314684_72314838_72315375_72315533_72316949_72317045_72319881
ENSMUST00000206272.2	chr7	+	641	5	ISM	ENSMUSG00000063065.14	ENST00000395200.5	960	7	1038	272	152	-272	internal_fragment	FALSE	canonical	NA	NA	NA	NA	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGCGCATCACAGTAGAG	NA	NA	NA	NA	NA	NA	NA	NA	126359920	126363744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_126360086_126362206_126362397_126362912_126363028_126363405_126363538_126363705
ENSMUST00000206338.2	chr7	-	918	6	ISM	ENSMUSG00000030605.16	ENSMUST00000107409.5	2008	9	6003	676	6003	-675	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCACCCTGCGCCTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	78792798	78784191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616
ENSMUST00000206346.2	chr7	+	806	6	FSM	ENSMUSG00000030682.5	ENSMUST00000206346.2	806	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAGCAGACCGCGCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	126575759	126578823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578086_126578169_126578476_126578576_126578706
ENSMUST00000206370.2	chr7	-	722	5	NNC	ENSMUSG00000006335.17	novel	1091	6	NA	NA	25	-636	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGGCACAGATGTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	3632858	3623972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_3623983_3624061_3624132_3627597_3627669_3631822_3632086_3632550
ENSMUST00000206414.2	chr7	-	2310	2	FSM	ENSMUSG00000049580.13	ENSMUST00000206414.2	2310	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAGACTCTGTTCTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	98010495	98000074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_98002338_98010448
ENSMUST00000206480.2	chr7	+	454	3	FSM	ENSMUSG00000030532.7	ENSMUST00000206480.2	454	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGAGAGGGGGAGGGGATG	NA	NA	NA	NA	NA	NA	NA	NA	79992863	79993727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_79992998_79993286_79993343_79993463
ENSMUST00000206517.2	chr7	+	905	6	FSM	ENSMUSG00000078681.11	ENSMUST00000206517.2	905	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	NA	NA	NA	NA	NA	NA	NA	65343224	65351650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_65343318_65343598_65343692_65344917_65345076_65347443_65347619_65348839_65348916_65351340
ENSMUST00000206570.2	chr7	-	1400	8	FSM	ENSMUSG00000030697.8	ENSMUST00000206570.2	1400	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTAGGTTCTGTCAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	126391512	126385039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232
ENSMUST00000206574.2	chr7	+	1286	11	FSM	ENSMUSG00000030763.8	ENSMUST00000206574.2	1286	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTGCTACATCTGTACA	NA	NA	NA	NA	NA	NA	NA	NA	122977278	123029572	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645_123003712_123009950_123010050_123017440_123017562_123020760_123020863_123021929_123022022_123027316_123027415_123029355
ENSMUST00000206575.2	chr7	+	810	6	FSM	ENSMUSG00000075701.11	ENSMUST00000206575.2	1157	6	-1	348	-1	-132	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGGCTGCTGGCTAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	65729424	65738803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_65729538_65730079_65730215_65733147_65733255_65736694_65736785_65736940_65737017_65738514
ENSMUST00000206598.2	chr19	-	1393	8	FSM	ENSMUSG00000010095.14	ENSMUST00000206598.2	1393	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCACCCCTGCCTCATGA	NA	NA	NA	NA	NA	NA	NA	NA	8690349	8684950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093
ENSMUST00000206656.2	chr7	+	1516	1	FSM	ENSMUSG00000108798.2	ENSMUST00000206656.2	1516	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTATCCCTAATACCTGC	NA	NA	NA	NA	NA	NA	NA	NA	17963701	17965217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_17963700_17965200
ENSMUST00000206692.2	chr6	-	1400	9	FSM	ENSMUSG00000053907.11	ENSMUST00000206692.2	1400	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATACTTTCGCCATGA	NA	NA	NA	NA	NA	NA	NA	NA	72416539	72411527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_72411723_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ENSMUST00000206724.2	chr7	+	292	3	ISM	ENSMUSG00000030816.9	ENSMUST00000033088.8	3906	18	3957	7685	3957	-7685	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCTAAAAGGAGATGCCC	NA	NA	NA	NA	NA	NA	NA	NA	127192047	127195072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_127192149_127193778_127193915_127195017
ENSMUST00000206734.2	chr7	-	2224	10	FSM	ENSMUSG00000055078.8	ENSMUST00000206734.2	2224	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAAACCAATCTTAA	NA	NA	NA	NA	NA	NA	NA	NA	57159807	57057652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_57058658_57063333_57063546_57067967_57068121_57071490_57071635_57102692_57102776_57138549_57138771_57138874_57138943_57140487_57140610_57157726_57157887_57159751
ENSMUST00000206772.2	chr7	+	653	7	FSM	ENSMUSG00000030672.13	ENSMUST00000206772.2	653	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	126808070	126813460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126808124_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUST00000206887.2	chr7	+	693	4	FSM	ENSMUSG00000038695.14	ENSMUST00000206887.2	693	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTGTGCCTGGGCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	44117445	44121073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_44117615_44118230_44118394_44119835_44119962_44120838
ENSMUST00000206938.2	chr6	+	1836	1	FSM	ENSMUSG00000108526.2	ENSMUST00000206938.2	1836	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACTGAGGTTTCTCAAAC	NA	NA	NA	NA	NA	NA	NA	NA	91686386	91688222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_91686400_91688200
ENSMUST00000206947.2	chr6	+	618	4	FSM	ENSMUSG00000034192.6	ENSMUST00000206947.2	618	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACTTTTTTTTTTAATG	NA	NA	NA	NA	NA	NA	NA	NA	91493029	91499602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_91493061_91494029_91494141_91496530_91496627_91499222
ENSMUST00000206952.2	chr1	-	366	2	FSM	ENSMUSG00000100954.5	ENSMUST00000206952.2	366	2	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTTCCTCAACCGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	151220487	151220119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_151220297_151220298
ENSMUST00000206958.2	chr6	-	485	1	FSM	ENSMUSG00000108772.2	ENSMUST00000206958.2	485	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTTGACTTGCGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	71619080	71618595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_71618600_71619100
ENSMUST00000206996.2	chr7	-	156	1	FSM	ENSMUSG00000108437.2	ENSMUST00000206996.2	156	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTCACACAATGGCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	127612356	127612200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_127612200_127612400
ENSMUST00000207030.2	chr7	-	2178	3	FSM	ENSMUSG00000061374.15	ENSMUST00000207030.2	2178	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTACTGAAAGAAGATCAG	NA	NA	NA	NA	NA	NA	NA	NA	5017268	5010557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_5012205_5015676_5016022_5017082
ENSMUST00000207054.2	chr19	+	1657	8	FSM	ENSMUSG00000024921.18	ENSMUST00000207054.2	2333	8	5	671	0	102	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCAAAGATTAAAAACAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	26725810	26755051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_26726353_26727251_26727348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
ENSMUST00000207082.2	chr7	-	1241	9	ISM	ENSMUSG00000001794.14	ENSMUST00000108196.8	1192	10	134	-54	134	6	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGGTTATTTTTTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	29892397	29886360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291
ENSMUST00000207246.4	chr19	+	2315	2	FSM	ENSMUSG00000096365.5	ENSMUST00000207246.4	2315	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAACTTCTGAAAACTTC	NA	NA	NA	NA	NA	NA	NA	NA	13208691	13213764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_13208839_13211596
ENSMUST00000207263.2	chr7	-	835	7	NNC	ENSMUSG00000006315.10	novel	870	7	NA	NA	13	-29	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCAGTGAAGTAAACAGT	NA	NA	NA	NA	NA	NA	NA	NA	30428934	30427158	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428167_30428626_30428697_30428768
ENSMUST00000207296.2	chr7	-	875	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207296.2	875	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTATGTCCATCTCT	NA	NA	NA	NA	NA	NA	NA	NA	30428947	30427127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_30427329_30427411_30427555_30427629_30427715_30427856_30427994_30428081_30428142_30428626_30428697_30428768
ENSMUST00000207309.2	chr7	-	835	4	FSM	ENSMUSG00000062797.15	ENSMUST00000207309.2	835	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	NA	NA	NA	NA	NA	NA	NA	89590334	89567895	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_89568216_89569280_89569400_89584934_89585173_89590176
ENSMUST00000207363.3	chr7	-	410	4	NNC	ENSMUSG00000038502.18	novel	1883	12	NA	NA	4795	-483	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGAGCAGCAGCAGCGAG	NA	NA	NA	NA	NA	NA	NA	NA	44514259	44512980	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_44513157_44513806_44513912_44514035_44514091_44514185
ENSMUST00000207622.2	chr7	-	942	5	ISM	ENSMUSG00000030718.10	ENSMUST00000032963.10	2772	14	37029	613	37029	-613	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAGTATCCCAAGAAACCA	NA	NA	NA	NA	NA	NA	NA	NA	99984485	99976556	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_99977090_99978241_99978310_99981064_99981130_99983134_99983180_99984254
ENSMUST00000207628.2	chr7	-	576	3	FSM	ENSMUSG00000046792.9	ENSMUST00000207628.2	576	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAACTCGAAGTTCATGC	NA	NA	NA	NA	NA	NA	NA	NA	6158996	6145284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_6145619_6146060_6146150_6158843
ENSMUST00000207684.2	chr8	+	626	2	FSM	ENSMUSG00000109523.2	ENSMUST00000207684.2	1349	2	0	723	0	-723	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGCACTGTGGGCCGACG	NA	NA	NA	NA	NA	NA	NA	NA	70782466	70783514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_70782927_70783348
ENSMUST00000207747.2	chr7	-	669	3	FSM	ENSMUSG00000036835.8	ENSMUST00000207747.2	669	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTTCTTGGGATCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	30262512	30261287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_30261560_30261748_30261854_30262220
ENSMUST00000207849.2	chr7	-	2128	6	FSM	ENSMUSG00000070436.13	ENSMUST00000207849.2	2128	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATATCATTCTTTCTAAG	NA	NA	NA	NA	NA	NA	NA	NA	99002321	98994601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99001030_99001075_99002259
ENSMUST00000207901.2	chr7	+	1263	3	FSM	ENSMUSG00000051184.8	ENSMUST00000207901.2	1263	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCACTGTGTGTTCAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	5017413	5021487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_5017526_5019944_5020044_5020435
ENSMUST00000208040.2	chr7	-	923	5	NNC	ENSMUSG00000033917.16	novel	1582	6	NA	NA	30	-3057	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	196	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGGATTTTGTCTCCCCG	NA	NA	NA	NA	NA	NA	NA	NA	118304971	118290824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_118291018_118293715_118293809_118294258_118294365_118297777_118297950_118304612
ENSMUST00000208118.2	chr7	-	500	2	ISM	ENSMUSG00000037664.14	ENST00000430149.3	1871	4	1679	371	1333	25	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	176	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGATGAGAAAAAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	143013048	143012458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143012759_143012848
ENSMUST00000208119.2	chr7	-	2173	6	FSM	ENSMUSG00000070436.13	ENSMUST00000208119.2	2173	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATTCTTTCTAAGACAAA	NA	NA	NA	NA	NA	NA	NA	NA	99002321	98994596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002088_99002173_99002259
ENSMUST00000208137.2	chr7	-	218	3	ISM	ENSMUSG00000037664.14	ENST00000430149.3	1871	4	1198	626	852	-230	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGACGATGGAAGAACTCTG	NA	NA	NA	NA	NA	NA	NA	NA	143013529	143012713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143012759_143012848_143012988_143013495
ENSMUST00000208172.2	chr7	+	715	2	NNC	ENSMUSG00000109511.2	novel	2708	2	NA	NA	-45	-1100	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGTGGCAGTGCATCCC	NA	NA	NA	NA	NA	NA	NA	NA	44465723	44478465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_44465884_44477910
ENSMUST00000208312.2	chr7	-	659	6	ISM	ENSMUSG00000109324.3	ENST00000610806.4	1123	8	122	1363	-6	-1227	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGCGCTGTGTGGGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	44635749	44627550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44627702_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
ENSMUST00000208316.2	chr8	+	1190	5	FSM	ENSMUSG00000011837.5	ENSMUST00000208316.2	1190	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTGTGATTCCCCCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	4303093	4306218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_4303305_4304281_4304402_4304550_4304582_4305283_4305374_4305480
ENSMUST00000208495.2	chr7	+	945	1	FSM	ENSMUSG00000109325.2	ENSMUST00000208495.2	945	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGAACCGCAACATCAACC	NA	NA	NA	NA	NA	NA	NA	NA	23056549	23057494	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_23056500_23057500
ENSMUST00000208508.3	chr8	-	2586	5	FSM	ENSMUSG00000097534.4	ENSMUST00000208508.3	2586	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATGACTGTCTTAGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	47192543	47121842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_47123750_47127958_47128064_47131741_47131897_47189306_47189379_47192196
ENSMUST00000208558.2	chr8	+	408	1	FSM	ENSMUSG00000109241.2	ENSMUST00000208558.2	408	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTGGTGTGCATGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	4441725	4442133	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_4441700_4442100
ENSMUST00000208605.2	chr7	+	2275	3	FSM	ENSMUSG00000055407.15	ENSMUST00000208605.2	2275	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTCTCTGGCTCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	98917612	98986344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_98918521_98964895_98965110_98985191
ENSMUST00000208626.2	chr7	+	1369	2	FSM	ENSMUSG00000109511.2	ENSMUST00000208626.2	2708	2	0	1339	0	-671	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTGTCAGCTGGCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	44465511	44478894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_44465897_44477910
ENSMUST00000208634.2	chr7	+	2127	10	FSM	ENSMUSG00000035203.17	ENSMUST00000208634.2	2127	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	5086753	5101175	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
ENSMUST00000208682.2	chr7	-	817	9	NNC	ENSMUSG00000038502.18	novel	1883	12	NA	NA	224	-1538	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGGGGTCAGGGGATGCC	NA	NA	NA	NA	NA	NA	NA	NA	44518830	44514035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_44514094_44514185_44514260_44514336_44514427_44514895_44515048_44516233_44516342_44516483_44516542_44516616_44516700_44516798_44516937_44518774
ENSMUST00000208689.2	chr7	-	397	1	FSM	ENSMUSG00000109509.2	ENSMUST00000208689.2	397	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATTTTGGCTGATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	30184522	30184125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_30184100_30184500
ENSMUST00000208694.2	chr9	+	1029	9	FSM	ENSMUSG00000057551.11	ENSMUST00000208694.2	3988	9	0	2959	0	-1276	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGCTCAGCCAGTAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	19533423	19558068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_19533582_19540392_19540503_19543629_19543685_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
ENSMUST00000208710.2	chr7	+	1976	8	FSM	ENSMUSG00000030399.3	ENSMUST00000208710.2	2742	8	38	728	0	529	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACCCAGGACCCAGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	19144987	19156038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_19145072_19148043_19148256_19148821_19148977_19149325_19149459_19150643_19150816_19153363_19153488_19154031_19154222_19155132
ENSMUST00000208711.2	chr7	+	1962	7	FSM	ENSMUSG00000030498.16	ENSMUST00000208711.2	1962	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGATTTCCCAGCAATATG	NA	NA	NA	NA	NA	NA	NA	NA	51537665	51644263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
ENSMUST00000208737.2	chr11	+	1505	14	FSM	ENSMUSG00000025156.18	ENSMUST00000208737.2	1843	14	20	318	0	39	multi-exon	TRUE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTGCCTGTGGAAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	120675130	120679609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677837_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
ENSMUST00000208752.2	chr7	-	441	1	FSM	ENSMUSG00000066724.4	ENSMUST00000208752.2	441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	385	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTGTCTCCACTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	23646657	23646216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_23646200_23646700
ENSMUST00000208831.2	chr7	-	187	2	NNC	ENSMUSG00000030629.16	novel	841	5	NA	NA	53	-16136	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATCTATGCAGCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	84283547	84283112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_84283199_84283446
ENSMUST00000208924.2	chr7	+	2906	4	FSM	ENSMUSG00000055407.15	ENSMUST00000208924.2	2906	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTCTCTGGCTCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	98917178	98986344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_98918521_98964895_98965110_98966678_98966876_98985191
ENSMUST00000208926.2	chr11	+	1820	5	FSM	ENSMUSG00000048834.17	ENST00000402613.4	2817	5	32	965	0	-965	multi-exon	FALSE	canonical	NA	NA	NA	NA	233	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATATTTCTCTGTTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	16207723	16232864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_16208087_16209854_16210022_16211437_16211489_16212913_16213251_16231962
ENSMUST00000208945.2	chr7	+	437	4	ISM	ENSMUSG00000030643.15	ENST00000260056.6	1399	5	299	6642	299	-6642	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACAGTATGCTAGCAATAA	NA	NA	NA	NA	NA	NA	NA	NA	92426790	92478877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_92426899_92469190_92469292_92473005_92473090_92478733
ENSMUST00000209065.2	chr7	-	727	6	FSM	ENSMUSG00000006315.10	ENSMUST00000209065.2	727	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTATGTCCATCTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	30428746	30427125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428142_30428626
ENSMUST00000209075.2	chr7	+	468	1	FSM	ENSMUSG00000109059.2	ENSMUST00000209075.2	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGTGTATACGTTAATA	NA	NA	NA	NA	NA	NA	NA	NA	51107807	51108275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_51107800_51108300
ENSMUST00000209085.2	chr19	+	1841	8	FSM	ENSMUSG00000024921.18	ENSMUST00000209085.2	1841	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTGGTGTTGGTACTTT	NA	NA	NA	NA	NA	NA	NA	NA	26725801	26755675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_26725904_26727251_26727348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
ENSMUST00000209099.2	chr7	+	2088	12	FSM	ENSMUSG00000030435.17	ENSMUST00000209099.2	2088	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGATCCTCATCTGT	NA	NA	NA	NA	NA	NA	NA	NA	5065243	5082932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078239_5078466_5078716_5082180
ENSMUST00000209124.2	chr7	-	741	7	FSM	ENSMUSG00000109324.3	ENSMUST00000209124.2	741	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGTGCCAGGCTGGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	44635743	44626323	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44635706
ENSMUST00000209216.2	chr8	+	754	3	ISM	ENSMUSG00000031636.8	ENSMUST00000210422.2	1479	8	29512	100	29462	-100	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCTTTGGGGACAGCAAT	NA	NA	NA	NA	NA	NA	NA	NA	46368068	46372275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_46368297_46370494_46370607_46371861
ENSMUST00000209245.2	chr7	-	1512	12	NNC	ENSMUSG00000003269.18	novel	2519	12	NA	NA	9	42	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTATTTGTAATTAACATG	NA	NA	NA	NA	NA	NA	NA	NA	45463726	45457062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_45457273_45457356_45457512_45457599_45457672_45457796_45457874_45459546_45459663_45459994_45460144_45460277_45460391_45460952_45461034_45461603_45461723_45462270_45462338_45462432_45462581_45463521
ENSMUST00000209275.2	chr8	-	551	1	FSM	ENSMUSG00000110331.2	ENSMUST00000209275.2	551	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	609	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTCCTGGGTTTGCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	29777009	29776458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_29776500_29777000
ENSMUST00000209340.2	chr7	+	661	3	FSM	ENSMUSG00000110279.2	ENSMUST00000209340.2	778	3	0	117	0	-117	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGTCCCCGGCTCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	44771340	44773451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_44771547_44772486_44772645_44773154
ENSMUST00000209350.2	chr7	+	2466	7	FSM	ENSMUSG00000002781.20	ENSMUST00000209350.2	2466	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTCTGGAGTAGTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	45546524	45566833	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_45547091_45549055_45549161_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
ENSMUST00000209363.2	chr8	-	1251	8	FSM	ENSMUSG00000031712.11	ENSMUST00000209363.2	1251	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTAACTCTTACTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	83129199	83058260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_83058654_83061097_83061236_83064194_83064240_83069867_83069953_83071003_83071102_83072228_83072328_83106122_83106245_83128928
ENSMUST00000209469.2	chr19	+	2354	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	5540482	5545229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
ENSMUST00000209500.2	chr7	+	1560	5	FSM	ENSMUSG00000038618.13	ENSMUST00000209500.2	1560	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTCAGTGTGTCCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	140795806	140798568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_140795854_140796633_140796765_140796912_140797626_140797798_140798082_140798182
ENSMUST00000209565.2	chr8	+	1641	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209565.2	1971	2	0	330	0	-329	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATACAAATAATTTTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	11608428	11612920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_11608567_11611417
ENSMUST00000209586.2	chr8	-	232	1	FSM	ENSMUSG00000109711.2	ENSMUST00000209586.2	232	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCGTCTATATAAGTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	65545198	65544966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_65545000_65545200
ENSMUST00000209619.2	chr8	-	1789	1	FSM	ENSMUSG00000109956.2	ENSMUST00000209619.2	1789	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAATGTAGTGTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	92034383	92032594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_92032600_92034400
ENSMUST00000209657.2	chr8	-	785	1	FSM	ENSMUSG00000109933.2	ENSMUST00000209657.2	785	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAGATTTTTAATAGTG	NA	NA	NA	NA	NA	NA	NA	NA	11734243	11733458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_11733500_11734200
ENSMUST00000209667.2	chr12	-	1635	10	FSM	ENSMUSG00000004698.12	ENSMUST00000209667.2	1635	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATAAGATAGGTGGCAGAT	NA	NA	NA	NA	NA	NA	NA	NA	34578303	34423825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_34424138_34439243_34439462_34440140_34440352_34443281_34443405_34452750_34452867_34479496_34479619_34481861_34481989_34483079_34483222_34487135_34487378_34578281
ENSMUST00000209711.2	chr7	-	495	6	FSM	ENSMUSG00000074129.15	ENSMUST00000209711.2	495	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATAAAGACTGTTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	44778050	44775368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776632_44776699_44776919_44776993_44777965
ENSMUST00000209782.2	chr18	+	595	3	NIC	ENSMUSG00000069372.4	novel	790	3	NA	NA	6	-147	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATCCTGTTGTTCATCTT	NA	NA	NA	NA	NA	NA	NA	NA	57601593	57610280	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_+_57601909_57605683_57605769_57610085
ENSMUST00000209787.2	chr8	-	1833	14	FSM	ENSMUSG00000038225.16	ENSMUST00000209787.2	1833	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTAAATTAGTGCCGG	NA	NA	NA	NA	NA	NA	NA	NA	47070243	47031897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
ENSMUST00000209812.2	chr7	-	690	8	NNC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	38	25	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	138	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTTCCTTAGGCACTGC	NA	NA	NA	NA	NA	NA	NA	NA	44778147	44775295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776512_44776632_44776699_44776919_44776993_44778123
ENSMUST00000209838.2	chr7	-	449	4	NNC	ENSMUSG00000003429.12	novel	661	5	NA	NA	807	-14	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACGTACAGAACAGGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	44772952	44771816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_44771983_44772252_44772383_44772619_44772663_44772842
ENSMUST00000209860.2	chr8	-	601	3	ISM	ENSMUSG00000015994.11	ENST00000430308.1	614	5	14542	-267	14542	267	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	192	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCAACATTTAGTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	26491060	26489226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26489593_26489796_26489969_26490997
ENSMUST00000209885.2	chr8	+	1382	12	FSM	ENSMUSG00000038482.12	ENSMUST00000209885.2	2511	12	17	1112	0	-366	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACACGTATAGAGGAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	13388767	13427336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ENSMUST00000209927.2	chr7	-	552	7	NIC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	59	17	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCATGCCTGCCTGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	44778126	44775351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776919_44776993_44778123
ENSMUST00000209980.2	chr7	-	468	2	FSM	ENSMUSG00000110239.2	ENSMUST00000209980.2	468	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACACTTGCATAAGGGTA	NA	NA	NA	NA	NA	NA	NA	NA	100997191	100996615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_100996946_100997053
ENSMUST00000210005.2	chr8	+	1914	10	FSM	ENSMUSG00000019139.11	ENSMUST00000210005.2	1914	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTTGTGTGCTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	71047130	71049940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71047399_71047472_71047635_71047788_71047922_71048010_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
ENSMUST00000210018.2	chr7	-	723	5	ISM	ENSMUSG00000030894.6	ENST00000644810.1	1563	9	2597	556	2597	-556	internal_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGAGTATTGGAGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	105398339	105396152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089
ENSMUST00000210060.2	chr7	-	2577	6	FSM	ENSMUSG00000057342.16	ENSMUST00000210060.2	2577	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGACATCCCTTTCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	45367326	45359690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45367124
ENSMUST00000210081.2	chr8	+	926	8	NNC	ENSMUSG00000031634.14	novel	1640	12	NA	NA	6	-5145	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCTGTGCTTATAGGTC	NA	NA	NA	NA	NA	NA	NA	NA	46428570	46444850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_+_46428626_46432245_46432333_46433351_46433505_46433609_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784
ENSMUST00000210106.2	chr7	-	943	4	NNC	ENSMUSG00000050708.17	novel	968	4	NA	NA	45	-1	intron_retention	FALSE	canonical	NA	NA	NA	NA	13931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	NA	NA	NA	NA	NA	NA	NA	45109263	45107368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_45107708_45107958_45108106_45108507_45108655_45108953
ENSMUST00000210125.2	chr7	-	408	4	ISM	ENSMUSG00000007833.16	ENST00000540132.5	1633	11	148	2700	122	-2700	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGCTGTGGAGGGTGTCG	NA	NA	NA	NA	NA	NA	NA	NA	44803859	44796634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44796739_44796822_44797005_44797148_44797227_44803815
ENSMUST00000210192.2	chr7	+	1258	7	FSM	ENSMUSG00000030688.16	ENSMUST00000210192.2	1258	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGCTCTTTGTGCCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	100970659	100995515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_100970758_100970920_100971241_100991704_100991853_100992390_100992495_100993123_100993242_100994841_100994895_100995098
ENSMUST00000210202.2	chr8	-	692	2	FSM	ENSMUSG00000056155.7	ENSMUST00000210202.2	692	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCCAATAAATGCTAAGG	NA	NA	NA	NA	NA	NA	NA	NA	84903181	84900387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_84900602_84902703
ENSMUST00000210239.2	chr7	+	518	5	NNC	ENSMUSG00000031097.16	novel	768	7	NA	NA	841	-59	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCCCACTTCCCCAGTAC	NA	NA	NA	NA	NA	NA	NA	NA	141996907	141998046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_141996950_141997054_141997169_141997307_141997398_141997642_141997820_141997951
ENSMUST00000210267.2	chr8	-	151	1	FSM	ENSMUSG00000109658.2	ENSMUST00000210267.2	151	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	41136686	41136535	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_41136500_41136700
ENSMUST00000210275.2	chr5	-	1776	4	FSM	ENSMUSG00000090963.3	ENSMUST00000210275.2	1776	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAGATATGGTAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	110220379	110194004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_110195551_110196887_110196949_110197131_110197259_110220337
ENSMUST00000210297.2	chr7	-	601	5	FSM	ENSMUSG00000040212.13	ENSMUST00000210297.2	601	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGAGCCTGACTCGGCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	45570586	45567454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_45567660_45568741_45568883_45569358_45569462_45569712_45569829_45570550
ENSMUST00000210314.2	chr7	-	1658	10	FSM	ENSMUSG00000038650.16	ENSMUST00000210314.2	1658	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGGTCCTTGTCGTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	140748602	140740238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748486
ENSMUST00000210343.2	chr8	-	879	1	FSM	ENSMUSG00000109610.2	ENSMUST00000210343.2	879	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	336	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGTTTTTATATGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	61834421	61833542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_61833500_61834400
ENSMUST00000210350.2	chr7	+	529	4	FSM	ENSMUSG00000089847.9	ENSMUST00000210350.2	529	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTTCTTGTCTTCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	105289757	105291056	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_105289830_105289968_105290065_105290234_105290368_105290828
ENSMUST00000210351.2	chr9	+	918	7	ISM	ENSMUSG00000032536.13	ENST00000449246.5	1971	12	41	7949	41	1689	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTTACAGAAGAAGGCAAAA	NA	NA	NA	NA	NA	NA	NA	NA	121232543	121275863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_121232871_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755
ENSMUST00000210390.2	chr8	+	1326	1	FSM	ENSMUSG00000109941.2	ENSMUST00000210390.2	1326	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTGAGTCTGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	111782970	111784296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_111783000_111784300
ENSMUST00000210422.2	chr8	+	1479	8	FSM	ENSMUSG00000031636.8	ENSMUST00000210422.2	1479	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGAGTCTACTTGTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	46338556	46372375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_46338710_46349784_46349937_46353511_46353597_46362055_46362124_46366733_46366998_46368165_46368297_46370494_46370607_46371861
ENSMUST00000210429.2	chr8	+	1632	1	FSM	ENSMUSG00000109909.2	ENSMUST00000210429.2	1632	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGTTTCTTGGTCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	104879337	104880969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_104879300_104881000
ENSMUST00000210527.2	chr7	-	389	2	ISM	ENSMUSG00000019539.12	ENSMUST00000211352.2	1453	7	496	5684	496	-5684	internal_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGGTGAGCGCAGCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	44741149	44738020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44738125_44740864
ENSMUST00000210564.3	chr18	+	2524	1	FSM	ENSMUSG00000109901.3	ENSMUST00000210564.3	2524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	424	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTATTTCCTCGCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	67338436	67340960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_67338400_67341000
ENSMUST00000210595.2	chr4	+	150	2	FSM	ENSMUSG00000028643.12	ENSMUST00000210595.2	150	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTGTAAGCAGATGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	119053104	119058146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_119053219_119058110
ENSMUST00000210615.2-1	chr7	-	545	2	ISM	ENSMUSG00000019539.12	ENSMUST00000211352.2	1453	7	8455	107	8455	-107	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	277	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGGCCACATCCTGACCTA	NA	NA	NA	NA	NA	NA	NA	NA	44733190	44732443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44732788_44732989
ENSMUST00000210642.2	chr7	-	1602	7	FSM	ENSMUSG00000003420.9	ENSMUST00000210642.2	1602	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	NA	NA	NA	NA	NA	NA	NA	NA	44753169	44742487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751825_44752096_44752426_44752698_44753063
ENSMUST00000210658.2	chr16	+	1105	4	FSM	ENSMUSG00000109783.2	ENSMUST00000210658.2	1105	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATGAACCATGTCTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	23339010	23353841	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_23339225_23340436_23340704_23346244_23346357_23353329
ENSMUST00000210738.2	chr16	+	527	3	FSM	ENSMUSG00000109857.2	ENSMUST00000210738.2	527	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACTAATTCCCTTCGTG	NA	NA	NA	NA	NA	NA	NA	NA	13280409	13285101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_13280461_13281736_13281802_13284690
ENSMUST00000210776.2	chr8	-	2583	2	FSM	ENSMUSG00000110368.2	ENSMUST00000210776.2	2583	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGTTAATATATTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	65164110	65154140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_65156606_65163992
ENSMUST00000210803.2	chr7	+	590	5	FSM	ENSMUSG00000037772.14	ENSMUST00000210803.2	590	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGACACTTTGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	142086897	142094484	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_142086979_142088741_142088865_142089806_142089890_142091003_142091078_142094255
ENSMUST00000210812.2	chr8	+	3226	5	FSM	ENSMUSG00000036977.9	ENSMUST00000210812.2	4591	5	0	1365	0	374	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCAATTATGATCGTTT	NA	NA	NA	NA	NA	NA	NA	NA	80438479	80504323	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_80438604_80439781_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUST00000210815.2	chr7	+	1535	8	FSM	ENSMUSG00000063229.16	ENSMUST00000210815.2	1535	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	NA	NA	NA	NA	NA	NA	NA	46495264	46505051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_46495342_46497019_46497170_46498447_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
ENSMUST00000210967.2	chr7	-	658	8	NNC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	41	23	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	44778144	44775345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_44775457_44775538_44775678_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ENSMUST00000211099.2	chr10	+	490	5	FSM	ENSMUSG00000073427.5	ENSMUST00000211099.2	490	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAGAAAAAAGAAAAAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	82190088	82236680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_82190216_82204404_82204532_82204731_82204793_82219596_82219679_82236587
ENSMUST00000211139.2	chr13	-	641	3	FSM	ENSMUSG00000032621.9	ENST00000612404.4	1344	3	11	692	2	-692	multi-exon	FALSE	canonical	NA	NA	NA	NA	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGTTTTTGTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	103911114	103903343	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_103903543_103905824_103905959_103910806
ENSMUST00000211167.2	chr9	+	545	3	FSM	ENSMUSG00000110161.2	ENSMUST00000211167.2	545	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTAAAAGTGGCTTCATG	NA	NA	NA	NA	NA	NA	NA	NA	8004830	8009270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_8004885_8005927_8006106_8008957
ENSMUST00000211176.2	chr7	+	515	3	FSM	ENSMUSG00000109602.2	ENSMUST00000211176.2	515	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGTGTGTTTCCATCTT	NA	NA	NA	NA	NA	NA	NA	NA	45391472	45399681	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_45391556_45394417_45394490_45399321
ENSMUST00000211195.2	chr7	-	222	3	ISM	ENSMUSG00000003873.12	ENST00000354470.7	433	5	0	3328	0	-1808	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGCAGCCGGACGAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	45116199	45114612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45114749_45115643_45115696_45116165
ENSMUST00000211253.2	chr8	+	1405	3	FSM	ENSMUSG00000109704.2	ENSMUST00000211253.2	1405	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTGGTCATGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	36626632	36628742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_36626734_36626900_36627001_36627538
ENSMUST00000211344.2	chr7	-	606	5	FSM	ENSMUSG00000033916.6	ENSMUST00000211344.2	606	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	12768571	12765940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12767755_12767970_12768561
ENSMUST00000211429.2	chr7	-	1358	8	FSM	ENSMUSG00000110206.2	ENSMUST00000211429.2	1358	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTGCGTGCCTGGAAT	NA	NA	NA	NA	NA	NA	NA	NA	44785709	44780611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44780991_44781492_44781562_44781651_44781837_44783305_44783451_44783796_44783941_44784545_44784600_44785087_44785202_44785441
ENSMUST00000211443.2	chr16	+	767	4	FSM	ENSMUSG00000097290.10	ENSMUST00000211443.2	767	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTGAAAGGTCCATG	NA	NA	NA	NA	NA	NA	NA	NA	21613067	21627790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_21613197_21614599_21614726_21625720_21625870_21627427
ENSMUST00000211456.2	chr7	-	1180	2	FSM	ENSMUSG00000100431.3	ENSMUST00000211456.2	1180	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGTGCCTTCTGAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	39447151	39440390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_39441375_39446955
ENSMUST00000211460.2	chr16	+	1155	5	FSM	ENSMUSG00000109783.2	ENSMUST00000211460.2	1155	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGGTGTTTACCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	23338959	23378830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_23339225_23346244_23346357_23353329_23353550_23362372_23362622_23378521
ENSMUST00000211473.2	chr7	+	1607	1	FSM	ENSMUSG00000110126.2	ENSMUST00000211473.2	1607	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGGTTCAGCACTCTC	NA	NA	NA	NA	NA	NA	NA	NA	136412637	136414244	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_136412600_136414200
ENSMUST00000211499.2	chr16	+	1405	5	FSM	ENSMUSG00000109783.2	ENSMUST00000211499.2	1405	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATATGTTTCACTCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	23339093	23362782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_23339225_23340436_23340969_23346244_23346357_23353329_23353550_23362372
ENSMUST00000211626.2	chr7	-	726	6	FSM	ENSMUSG00000033916.6	ENSMUST00000211626.2	726	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAATTTACCAAGGCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	12768666	12765945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766718_12766749_12767755_12767970_12768561
ENSMUST00000211700.2	chr8	-	1471	1	FSM	ENSMUSG00000110289.2	ENSMUST00000211700.2	1471	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAAGTGAGCATAACTTA	NA	NA	NA	NA	NA	NA	NA	NA	58105393	58103922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_58103900_58105400
ENSMUST00000211725.2	chr7	-	493	5	FSM	ENSMUSG00000003429.12	ENSMUST00000211725.2	493	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTCTGGCCAATGCCCTA	NA	NA	NA	NA	NA	NA	NA	NA	44773759	44771856	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44771973_44772252_44772383_44772586_44772663_44772842_44772975_44773720
ENSMUST00000211731.2	chr7	-	580	1	FSM	ENSMUSG00000110275.2	ENSMUST00000211731.2	580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATACTTGGCTGAACTGG	NA	NA	NA	NA	NA	NA	NA	NA	140758377	140757797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_140757800_140758400
ENSMUST00000211807.2	chr8	+	1085	1	FSM	ENSMUSG00000031765.9	ENSMUST00000211807.2	1085	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGGTTTTCTTGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	94905868	94906953	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_94905900_94907000
ENSMUST00000211898.2	chr8	+	1078	4	FSM	ENSMUSG00000071078.7	ENSMUST00000211898.2	1078	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACACCCCATTTGTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	70583982	70586398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_70584250_70584567_70584659_70585236_70585305_70585746
ENSMUST00000211916.2	chr8	+	411	1	FSM	ENSMUSG00000110546.2	ENSMUST00000211916.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCCACTATGAGGGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	72789088	72789499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_72789100_72789500
ENSMUST00000212000.2	chr8	+	2081	8	FSM	ENSMUSG00000031728.11	ENSMUST00000212000.2	2081	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCTCCCTTGTCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	110432719	110451564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_110433052_110434660_110434777_110436042_110436160_110444393_110444520_110447826_110447976_110448385_110448491_110449518_110449686_110450595
ENSMUST00000212005.2	chr8	-	878	8	ISM	ENSMUSG00000031708.18	ENSMUST00000238997.2	1334	12	1589	0	-313	0	intron_retention	FALSE	canonical	NA	NA	NA	NA	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	84299882	84298328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656
ENSMUST00000212031.2	chr8	-	409	4	FSM	ENSMUSG00000063253.12	ENSMUST00000212031.2	409	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCTGCTTTTTTTCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	84169134	84162500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_84162670_84164181_84164266_84164613_84164686_84169050
ENSMUST00000212072.2	chr8	+	660	4	FSM	ENSMUSG00000055835.11	ENSMUST00000212072.2	1930	4	0	1270	0	-944	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGGGTGTGGTGGATTTGG	NA	NA	NA	NA	NA	NA	NA	NA	112370032	112396370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_112370245_112385017_112385074_112392692_112392837_112396122
ENSMUST00000212102.2	chr8	-	351	1	FSM	ENSMUSG00000059775.6	ENSMUST00000212102.2	351	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2653	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCGTTTTGTAAGGACA	NA	NA	NA	NA	NA	NA	NA	NA	108166196	108165845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_108165800_108166200
ENSMUST00000212188.2	chr8	+	1052	3	FSM	ENSMUSG00000110615.2	ENSMUST00000212188.2	1052	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTACGTAGTCACCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	124676158	124685674	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_124676327_124679296_124679379_124684872
ENSMUST00000212193.2	chr8	+	1638	13	NNC	ENSMUSG00000033862.8	novel	1642	13	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	NA	NA	NA	NA	NA	NA	NA	NA	123951608	123958989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_+_123951708_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954505_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
ENSMUST00000212221.2	chr9	+	2313	4	FSM	ENSMUSG00000025893.9	ENSMUST00000212221.2	2313	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACGATGGAAAAAAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	4309834	4331711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_4309935_4313701_4313807_4316826_4317072_4329848
ENSMUST00000212291.2	chr8	+	633	2	FSM	ENSMUSG00000031765.9	ENSMUST00000212291.2	633	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	94905838	94906955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_94905967_94906450
ENSMUST00000212319.2	chr8	-	2111	12	FSM	ENSMUSG00000015027.12	ENSMUST00000212319.2	2111	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGGGTTGGTTTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	123338143	123305127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_123305937_123307789_123307908_123311650_123311773_123322504_123322609_123325258_123325399_123325777_123325906_123326011_123326079_123327213_123327358_123330116_123330220_123330877_123330953_123331878_123332003_123337966
ENSMUST00000212320.2	chr8	-	1121	9	FSM	ENSMUSG00000036120.11	ENSMUST00000212320.2	1121	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCAGGGTGCCTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	70591746	70585915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70587815_70587940_70588042_70588185_70588282_70588859_70588941_70590678_70590874_70591570
ENSMUST00000212352.2	chr8	+	1234	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212352.2	1234	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGATGTGGTCCTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	106427818	106430122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_106427950_106428805_106429029_106429242
ENSMUST00000212374.2	chr5	+	501	3	ISM	ENSMUSG00000029094.13	ENST00000420658.6	2441	16	48638	8015	48638	-8015	internal_fragment	FALSE	canonical	NA	NA	NA	NA	329	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTTTCCCCTCTGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	36141531	36147012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_36141651_36144398_36144666_36146897
ENSMUST00000212411.2	chr8	+	920	2	FSM	ENSMUSG00000110537.2	ENSMUST00000212411.2	2617	2	0	1697	0	-1697	multi-exon	FALSE	canonical	NA	NA	NA	NA	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTTAAAGATCAAGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	123891993	123898191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_123892257_123897534
ENSMUST00000212430.2	chr8	+	1261	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212430.2	1261	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	106428280	106430125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_106428436_106428805_106429029_106429242
ENSMUST00000212452.2	chr9	+	1216	1	FSM	ENSMUSG00000110644.2	ENSMUST00000212452.2	1216	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATTACTCAACCCGTAGA	NA	NA	NA	NA	NA	NA	NA	NA	4977958	4979174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_4978000_4979200
ENSMUST00000212490.2	chr8	+	458	2	FSM	ENSMUSG00000110537.2	ENSMUST00000212490.2	1115	2	0	657	0	-657	multi-exon	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACACCTCAAGGAATGGGC	NA	NA	NA	NA	NA	NA	NA	NA	123899583	123904847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_123899783_123904588
ENSMUST00000212517.2	chr8	-	2215	5	FSM	ENSMUSG00000034189.6	ENSMUST00000212517.2	2215	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACCTCTTGGGAGGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	120296734	120289538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_120290877_120292382_120292611_120292767_120293214_120294504_120294690_120296716
ENSMUST00000212546.2	chr8	-	880	1	FSM	ENSMUSG00000110686.2	ENSMUST00000212546.2	880	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	500	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGGTTTTTATATGAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	106312832	106311952	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_106312000_106312800
ENSMUST00000212590.2	chr8	-	2666	16	FSM	ENSMUSG00000006276.11	ENSMUST00000212590.2	3376	16	17	693	13	-693	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGCTTCCTGCCCACAG	NA	NA	NA	NA	NA	NA	NA	NA	73175282	73131954	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ENSMUST00000212637.2	chr8	+	569	2	FSM	ENSMUSG00000048478.8	ENSMUST00000212637.2	569	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGATCCTTTCCTGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	123939636	123948785	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_123939977_123948556
ENSMUST00000212707.2	chr8	+	642	1	FSM	ENSMUSG00000110679.2	ENSMUST00000212707.2	642	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	244	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCTTCAATAGTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	94949620	94950262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_94949600_94950300
ENSMUST00000212708.2	chr8	+	491	4	NNC	ENSMUSG00000003033.16	novel	2084	12	NA	NA	-28	-6883	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTACATGTGTCCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	72993938	73003723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_+_72994088_73000496_73000640_73002956_73003025_73003592
ENSMUST00000212847.2	chr8	-	215	2	FSM	ENSMUSG00000110642.2	ENSMUST00000212847.2	215	2	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTTTGTACTCATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	105039401	105037463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_105037582_105039304
ENSMUST00000212864.2	chr8	-	1250	1	FSM	ENSMUSG00000110469.2	ENSMUST00000212864.2	1250	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	194	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CCAAAAAAAAAAAAAAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	76133217	76131967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_76132000_76133200
ENSMUST00000212870.2	chr8	-	351	2	ISM	ENSMUSG00000052488.8	ENSMUST00000212991.2	3646	18	390	10300	283	-10300	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAACAGAGCCAGTGGAGT	NA	NA	NA	NA	NA	NA	NA	NA	73228680	73224773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_73224900_73228455
ENSMUST00000212922.2	chr8	-	3313	7	FSM	ENSMUSG00000014837.16	ENSMUST00000212922.2	3313	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGCTTCTGTCTAC	NA	NA	NA	NA	NA	NA	NA	NA	106015682	106007040	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106015400
ENSMUST00000212964.2	chr8	+	2033	8	FSM	ENSMUSG00000031728.11	ENSMUST00000212964.2	2033	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCTCCCTTGTCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	110432177	110451564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_110432496_110432988_110433052_110436042_110436160_110444393_110444539_110447826_110447976_110448385_110448491_110449518_110449686_110450595
ENSMUST00000212990.2	chr8	-	648	7	FSM	ENSMUSG00000031708.18	ENSMUST00000212990.2	648	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	NA	NA	NA	NA	NA	NA	NA	84299569	84298326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469
ENSMUST00000213005.2	chr8	+	1580	13	FSM	ENSMUSG00000033862.8	ENSMUST00000213005.2	1580	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	NA	NA	NA	NA	NA	NA	NA	NA	123951604	123958989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_123951670_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
ENSMUST00000213027.2	chr5	-	1269	8	NIC	ENSMUSG00000045790.11	novel	2177	13	NA	NA	34115	-173	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTATGTCTGCTGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	52562464	52533368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_52534021_52542446_52542564_52548430_52548464_52550012_52550090_52557426_52557572_52560048_52560134_52561458_52561532_52562377
ENSMUST00000213062.2	chr8	-	560	3	FSM	ENSMUSG00000006589.9	ENSMUST00000213062.2	560	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTCTCCTCAGTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	123302228	123301373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_123301767_123301875_123301955_123302140
ENSMUST00000213153.2	chr10	-	968	4	FSM	ENSMUSG00000019853.7	ENSMUST00000213153.2	968	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCCTTGCCTCCGCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	18421635	18416505	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_18417081_18420130_18420194_18420825_18420962_18421441
ENSMUST00000213179.2	chr9	+	1627	3	FSM	ENSMUSG00000042073.16	ENSMUST00000213179.2	1627	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACATGCTTTTGCTGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	106326982	106330119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_106327431_106328591_106328834_106329182
ENSMUST00000213200.2	chr11	+	1450	5	FSM	ENSMUSG00000071866.13	ENSMUST00000213200.2	1450	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAGAACTGTTTGTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	6366311	6369804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_6367142_6368100_6368132_6368225_6368315_6369112_6369286_6369477
ENSMUST00000213318.2	chr9	+	480	1	FSM	ENSMUSG00000074516.7	ENSMUST00000213318.2	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAAAGGCTCCTGCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	7751725	7752205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_7751700_7752200
ENSMUST00000213388.2	chr9	+	2344	9	FSM	ENSMUSG00000032114.10	ENSMUST00000213388.2	2344	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGGCTCATCCTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	44308395	44314265	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_44308744_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
ENSMUST00000213404.2	chr2	-	2778	4	FSM	ENSMUSG00000075102.3	ENSMUST00000213404.2	2778	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATATTAACAATTACAATG	NA	NA	NA	NA	NA	NA	NA	NA	88947627	88940470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_88942895_88944702_88944780_88946255_88946322_88947416
ENSMUST00000213665.2	chr9	-	1001	3	ISM	ENSMUSG00000074476.7	ENSMUST00000098942.6	1366	5	2944	0	2923	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGTGTGTGTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	21668655	21666737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21667592_21668412_21668490_21668585
ENSMUST00000213770.2	chr9	+	775	7	FSM	ENSMUSG00000035443.11	ENSMUST00000213770.2	775	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGTTGGAAGTGTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	26911005	26918626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
ENSMUST00000213796.2	chr10	+	388	2	FSM	ENSMUSG00000111524.2	ENSMUST00000213796.2	388	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATATGTATCTGTATAT	NA	NA	NA	NA	NA	NA	NA	NA	83928129	83932113	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_83928274_83931869
ENSMUST00000213811.2	chr10	-	287	1	FSM	ENSMUSG00000111202.2	ENSMUST00000213811.2	287	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGAGAGAAAGAAAGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	50301426	50301139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_50301100_50301400
ENSMUST00000213913.2	chr9	+	831	7	FSM	ENSMUSG00000004096.10	ENSMUST00000213913.2	831	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATCAATTTGACTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	14411942	14421661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_14412040_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
ENSMUST00000213971.2	chr9	-	758	5	ISM	ENSMUSG00000047036.9	ENST00000396077.8	3128	6	4643	1797	4628	-1681	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTTTGGTGTGTATCAGA	NA	NA	NA	NA	NA	NA	NA	NA	122686565	122682659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_122683054_122683771_122683883_122685763_122685891_122686131_122686227_122686534
ENSMUST00000214022.3	chr2	-	3947	2	FSM	ENSMUSG00000101391.4	ENSMUST00000214022.3	3947	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGATGTTAAAACAGAACCT	NA	NA	NA	NA	NA	NA	NA	NA	88862409	88851679	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_88855438_88862220
ENSMUST00000214050.2	chr9	+	640	5	ISM	ENSMUSG00000031963.9	ENST00000648848.1	2676	14	150360	78080	150360	-78080	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAACAATGTGCTGACC	NA	NA	NA	NA	NA	NA	NA	NA	23285227	23318127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_23285239_23286861_23287003_23288933_23289039_23292724_23292771_23317790
ENSMUST00000214117.2	chr9	+	860	6	FSM	ENSMUSG00000039217.14	ENSMUST00000214117.2	860	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCATGTGTCCAGCCCAATT	NA	NA	NA	NA	NA	NA	NA	NA	50476673	50493137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_50476827_50486567_50486649_50487993_50488006_50489060_50489193_50490586_50490721_50492789
ENSMUST00000214124.2	chr9	+	815	9	NNC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	180	-311	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCCTCACCCTGCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	20914213	20919824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918153_20918623_20918837_20918926_20919037_20919118_20919196_20919789
ENSMUST00000214133.2	chr8	-	339	2	FSM	ENSMUSG00000111184.2	ENSMUST00000214133.2	339	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCTGAGCAGAGGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	85696062	85694306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_85694498_85695914
ENSMUST00000214136.2	chr9	+	1570	8	ISM	ENSMUSG00000032279.12	ENSMUST00000167866.2	2403	11	8583	725	5238	50	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAATCCATAATGAATGA	NA	NA	NA	NA	NA	NA	NA	NA	54502377	54511220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUST00000214235.2	chr9	+	364	2	FSM	ENSMUSG00000111296.2	ENSMUST00000214235.2	364	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTTTGGTCCTACTTGC	NA	NA	NA	NA	NA	NA	NA	NA	60241424	60242251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_60241603_60242065
ENSMUST00000214247.2	chr9	+	656	4	ISM	ENSMUSG00000032393.16	ENSMUST00000167773.2	3142	21	43026	0	43026	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATCTGCAGTTCATGGA	NA	NA	NA	NA	NA	NA	NA	NA	64983029	64988272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_64983171_64985244_64985388_64985955_64986068_64988012
ENSMUST00000214298.2	chr9	+	423	4	FSM	ENSMUSG00000042138.10	ENST00000239614.8	2442	4	556	1463	279	-1431	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATTTTGGAGTCGGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	37400895	37434013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_37401130_37428668_37428769_37430022_37430084_37433985
ENSMUST00000214298.2-0	chr9	+	2435	4	FSM	ENSMUSG00000042138.10	ENST00000674284.1	2485	4	20	30	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAATTAAA	NA	NA	NA	NA	NA	NA	NA	NA	37400316	37435446	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_37401130_37428668_37428769_37430022_37430084_37433985
ENSMUST00000214434.2	chr10	-	351	1	FSM	ENSMUSG00000110960.2	ENSMUST00000214434.2	351	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTAGGTGCAGGCCATAG	NA	NA	NA	NA	NA	NA	NA	NA	31290161	31289810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_31289800_31290200
ENSMUST00000214460.2	chr9	-	745	5	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	2033	-8021	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTCATGCAGTATGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	44270934	44267066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_-_44267148_44267524_44267751_44269365_44269614_44270434_44270599_44270908
ENSMUST00000214576.2	chr9	-	1013	4	NNC	ENSMUSG00000032180.12	novel	1378	4	NA	NA	18	-312	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCCCCCCACCCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	21421530	21419162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_-_21419688_21420226_21420411_21420584_21420648_21421289
ENSMUST00000214640.2	chr9	-	703	7	NNC	ENSMUSG00000032299.11	novel	858	8	NA	NA	1192	-39	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTTTATAGGCAAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	57064423	57062361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064033_57064043_57064350
ENSMUST00000214811.2	chr10	+	555	1	FSM	ENSMUSG00000110841.2	ENSMUST00000214811.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2300	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCCCTACAAGTGTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	45751386	45751941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_45751400_45751900
ENSMUST00000214864.2	chr9	-	1662	5	FSM	ENSMUSG00000032175.12	ENSMUST00000214864.2	1662	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGGGCCTTACTCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	21042539	21034754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_21035855_21036159_21036278_21038419_21038640_21039855_21040008_21042467
ENSMUST00000214962.2	chr9	+	846	4	FSM	ENSMUSG00000032060.11	ENSMUST00000214962.2	846	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAACCTGCCTCGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	50664292	50667930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_50664385_50664485_50664778_50665811_50665935_50667591
ENSMUST00000215208.2	chr9	-	2915	4	ISM	ENSMUSG00000040722.8	ENSMUST00000046587.8	3225	7	20825	0	20825	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTCTGTGTTACTTGT	NA	NA	NA	NA	NA	NA	NA	NA	57354516	57348609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359
ENSMUST00000215618.2	chr9	+	1313	5	FSM	ENSMUSG00000057982.9	ENSMUST00000215618.2	1313	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGACAGACTAAATAATGC	NA	NA	NA	NA	NA	NA	NA	NA	22137047	22150739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837
ENSMUST00000215619.2	chr9	-	1423	2	FSM	ENSMUSG00000096472.3	ENSMUST00000215619.2	1423	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	905	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGACTTCAGATTTAGG	NA	NA	NA	NA	NA	NA	NA	NA	21202604	21199705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_21200629_21202104
ENSMUST00000215875.2	chr9	+	1193	11	FSM	ENSMUSG00000032192.10	ENSMUST00000215875.2	2105	11	5	907	5	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCTGACAGCGTTCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	75221422	75252246	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_75221666_75234414_75234552_75239154_75239197_75240090_75240168_75241450_75241584_75242932_75243077_75244552_75244645_75247469_75247519_75250789_75250887_75251762_75251930_75252234
ENSMUST00000215897.2	chr9	+	341	2	ISM	ENSMUSG00000032305.16	ENST00000357635.10	821	7	10	4432	10	-4432	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAAAGGCCCTATCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	57444899	57445429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_57445118_57445306
ENSMUST00000215902.2	chr9	+	1389	3	FSM	ENSMUSG00000057982.9	ENSMUST00000215902.2	1800	3	9	402	9	250	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCCTGGCCGGCCATGC	NA	NA	NA	NA	NA	NA	NA	NA	22137018	22150989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_22137129_22146315_22146443_22149837
ENSMUST00000215924.2	chr10	+	610	4	ISM	ENSMUSG00000019996.18	ENST00000454590.5	2929	18	-158	35229	34	-6490	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCGGAGGCAGAGGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	20046767	20121148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_20047068_20106529_20106629_20109114_20109193_20121015
ENSMUST00000215985.2	chr10	-	913	2	FSM	ENSMUSG00000110847.2	ENSMUST00000215985.2	913	2	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	2200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGGACTTACGGTTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	91095206	91088006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_91088091_91094377
ENSMUST00000216037.2	chr9	-	1037	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216037.2	1037	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGGTATTTGGGTACATC	NA	NA	NA	NA	NA	NA	NA	NA	14695822	14692284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_14692908_14693910_14694259_14695756
ENSMUST00000216063.2	chr9	-	6189	7	FSM	ENSMUSG00000047036.9	ENSMUST00000216063.2	6189	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAATTATACAGAAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	122695071	122677974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_122683054_122683771_122683883_122685763_122685891_122686167_122686227_122686534_122686704_122690773_122691325_122694978
ENSMUST00000216127.2	chr10	+	399	1	FSM	ENSMUSG00000111356.2	ENSMUST00000216127.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACGGCTTATGTGCATGT	NA	NA	NA	NA	NA	NA	NA	NA	20084235	20084634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_20084200_20084600
ENSMUST00000216138.2	chr9	-	799	4	FSM	ENSMUSG00000032532.8	ENSMUST00000216138.2	799	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGTGTCCAGTGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	121324705	121318889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_121319268_121322434_121322598_121323382_121323599_121324663
ENSMUST00000216294.2	chr9	+	1348	2	FSM	ENSMUSG00000066607.6	ENSMUST00000216294.2	1601	2	0	253	0	-215	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCTCTCCGTTGACCACCC	NA	NA	NA	NA	NA	NA	NA	NA	58396890	58406810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_58397676_58406247
ENSMUST00000216329.2	chr9	-	1559	3	FSM	ENSMUSG00000051705.14	ENSMUST00000216329.2	1559	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGTGTGTGGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	59657910	59643752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_59645152_59657544_59657655_59657860
ENSMUST00000216372.2	chr9	-	1154	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216372.2	2679	3	154	1371	-152	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGGTATTTGGGTACATC	NA	NA	NA	NA	NA	NA	NA	NA	14695998	14692284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_14692908_14693910_14694259_14695815
ENSMUST00000216436.2	chr9	-	2498	6	FSM	ENSMUSG00000003308.16	ENSMUST00000216436.2	2498	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGGGGGGGACAGGCAA	NA	NA	NA	NA	NA	NA	NA	NA	21150657	21141695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145358_21148366_21149053_21150371
ENSMUST00000216438.2	chr9	-	1370	1	FSM	ENSMUSG00000058492.6	ENSMUST00000216438.2	1370	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAGAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	123137034	123135664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_123135700_123137000
ENSMUST00000216543.2	chr10	+	372	2	FSM	ENSMUSG00000045886.8	ENSMUST00000216543.2	456	2	0	84	0	-84	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCAGCCATTGCCTCATA	NA	NA	NA	NA	NA	NA	NA	NA	43400101	43400557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_43400172_43400255
ENSMUST00000216594.2	chr9	+	1841	8	FSM	ENSMUSG00000032397.8	ENSMUST00000216594.2	1841	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAAGTTGAGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	64188884	64212706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_64188935_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUST00000216612.3	chr7	-	2929	2	FSM	ENSMUSG00000042909.5	ENSMUST00000216612.3	2929	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTCTGTCTGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	103832599	103826804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_103829637_103832502
ENSMUST00000216619.2	chr9	+	526	2	ISM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	7190	15	7160	-15	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTTTGCTACAATTTAT	NA	NA	NA	NA	NA	NA	NA	NA	14419102	14421858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_14419266_14421495
ENSMUST00000216755.2	chr9	+	836	4	FSM	ENSMUSG00000032060.11	ENSMUST00000216755.2	836	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTCGTGTTTGCAAAC	NA	NA	NA	NA	NA	NA	NA	NA	50664319	50667936	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_50664396_50664485_50664778_50665811_50665935_50667591
ENSMUST00000216755.2-0	chr9	+	586	4	FSM	ENSMUSG00000032060.11	ENSMUST00000216755.2	836	4	-27	277	0	-184	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATCACTTCATCCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	50664292	50667659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_50664396_50664485_50664778_50665811_50665935_50667591
ENSMUST00000216847.2	chr10	-	452	6	NNC	ENSMUSG00000019837.9	novel	2526	6	NA	NA	109	-376	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAAACCTGTGGAGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	40133558	40125721	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133516
ENSMUST00000216864.2	chr9	+	641	3	NNC	ENSMUSG00000032333.7	novel	1151	6	NA	NA	6984	-31	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGAGAAGCCTCTTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	58167509	58169168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_+_58167706_58168091_58168297_58168928
ENSMUST00000216867.2	chr9	+	577	4	FSM	ENSMUSG00000009927.10	ENSMUST00000216867.2	577	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATGGGTGCATCTGT	NA	NA	NA	NA	NA	NA	NA	NA	44318993	44321486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250
ENSMUST00000216931.2	chr10	+	394	5	ISM	ENSMUSG00000015889.9	ENST00000413268.6	1635	17	15099	94	15099	-94	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCATCCCGTGACTGCGAT	NA	NA	NA	NA	NA	NA	NA	NA	93310779	93320591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_93310851_93314308_93314364_93316552_93316649_93318823_93318929_93320524
ENSMUST00000216964.2	chr9	-	1215	9	NIC	ENSMUSG00000032340.9	novel	5414	28	NA	NA	53965	-41360	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGGTAAGACTTCGATTC	NA	NA	NA	NA	NA	NA	NA	NA	58889512	58825894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_58825940_58828444_58828584_58829049_58829199_58833044_58833200_58838238_58838399_58863241_58863363_58865180_58865336_58885907_58886045_58889358
ENSMUST00000216973.2	chr9	-	796	7	FSM	ENSMUSG00000032239.11	ENSMUST00000216973.2	796	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTGGGAGGTGATGAGA	NA	NA	NA	NA	NA	NA	NA	NA	22381039	22359768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_22360151_22361097_22361160_22365074_22365167_22368668_22368799_22370006_22370038_22379859_22379907_22380987
ENSMUST00000217031.2	chr9	+	810	9	NNC	ENSMUSG00000001774.9	novel	5789	11	NA	NA	49	-1650	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCAACAGTACTTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	18203650	18223309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216591_18216648_18220045_18220117_18221128_18221235_18223207
ENSMUST00000217060.2	chr9	+	410	3	NNC	ENSMUSG00000002825.9	novel	1316	10	NA	NA	7609	-14	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTTGTTTTCATTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	21330741	21331556	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_+_21330845_21330920_21331009_21331337
ENSMUST00000217163.2	chr9	-	935	4	FSM	ENSMUSG00000032112.11	ENSMUST00000217163.2	1185	4	164	86	138	-82	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTATATATTACAGTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	44318465	44315143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_44315758_44316539_44316644_44318100_44318276_44318423
ENSMUST00000217203.2	chr9	+	874	7	FSM	ENSMUSG00000111709.2	ENSMUST00000217203.2	874	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCTCCTCATAAGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	78164410	78176448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_78164486_78165971_78166081_78168837_78168890_78169683_78169817_78173249_78173392_78175291_78175424_78176217
ENSMUST00000217212.2	chr9	-	1500	9	FSM	ENSMUSG00000060594.7	ENSMUST00000217212.2	1500	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGCAAATCCGTAGTATG	NA	NA	NA	NA	NA	NA	NA	NA	50988366	50965939	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_50966396_50968793_50968957_50970756_50970857_50973482_50973567_50974536_50974573_50979338_50979497_50985147_50985446_50987621_50987646_50988185
ENSMUST00000217317.2	chr9	+	1599	6	FSM	ENSMUSG00000032518.7	ENSMUST00000217317.2	1599	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	119956909	119960625	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
ENSMUST00000217340.2	chr10	-	365	2	Genic_Genomic	ENSMUSG00000069682.7	novel	635	1	NA	NA	9	-2	multi-exon	FALSE	canonical	NA	NA	NA	NA	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGAAAAAAAAAATCAATAG	NA	NA	NA	NA	NA	NA	NA	NA	29575277	29574743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr10_-_29575071_29575239
ENSMUST00000217344.2	chr10	+	782	1	FSM	ENSMUSG00000110841.2	ENSMUST00000217344.2	782	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGATACACAAAATG	NA	NA	NA	NA	NA	NA	NA	NA	45751400	45752182	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_45751400_45752200
ENSMUST00000217382.2	chr9	-	1696	3	FSM	ENSMUSG00000074476.7	ENSMUST00000217382.2	1696	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTTTGTCTGCATGTGT	NA	NA	NA	NA	NA	NA	NA	NA	21671578	21667303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_21668691_21668980_21669126_21671414
ENSMUST00000217457.2	chr10	-	488	3	ISM	ENSMUSG00000019837.9	ENSMUST00000019982.9	887	6	3347	174	3342	-174	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGTCTTGTATGCAATT	NA	NA	NA	NA	NA	NA	NA	NA	40130325	40125519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_40125828_40127151_40127266_40130259
ENSMUST00000217475.2	chr9	+	749	4	FSM	ENSMUSG00000032060.11	ENSMUST00000217475.2	1117	4	91	277	91	-184	multi-exon	FALSE	canonical	NA	NA	NA	NA	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATCACTTCATCCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	50662715	50667659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_50662877_50664380_50664778_50665811_50665935_50667591
ENSMUST00000217523.2	chr9	+	819	6	ISM	ENSMUSG00000023277.14	ENSMUST00000188650.2	1508	8	5391	408	5391	-408	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGGGAAGACAGCTAGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	106089387	106092178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
ENSMUST00000217537.2	chr10	-	2526	6	FSM	ENSMUSG00000019837.9	ENSMUST00000217537.2	2526	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATAGTTGATGGTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	40133667	40123698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133574
ENSMUST00000217641.2	chr9	-	3462	16	FSM	ENSMUSG00000031996.18	ENSMUST00000217641.2	3462	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	NA	NA	NA	NA	NA	NA	NA	NA	31123083	31060852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
ENSMUST00000217641.2-0	chr9	-	3177	16	FSM	ENSMUSG00000031996.18	ENSMUST00000217641.2	3462	16	0	285	0	-280	multi-exon	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGCTGTGTAGCTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	31123083	31061137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
ENSMUST00000217680.2	chr10	-	2591	2	FSM	ENSMUSG00000112647.2	ENSMUST00000217680.2	2591	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGTGCCCATCCAGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	98535572	98489660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_98492155_98535475
ENSMUST00000217685.2	chr10	-	666	3	FSM	ENSMUSG00000025353.6	ENSMUST00000217685.2	666	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGTATATTTTTCTTAA	NA	NA	NA	NA	NA	NA	NA	NA	128657460	128654420	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_128654885_128655822_128655975_128657410
ENSMUST00000217777.2	chr10	-	455	5	FSM	ENSMUSG00000062981.6	ENSMUST00000217777.2	455	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGGAAAAAATAAAAATACCC	NA	NA	NA	NA	NA	NA	NA	NA	95337789	95316695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_95316840_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUST00000217815.2	chr12	+	345	1	FSM	ENSMUSG00000112908.2	ENSMUST00000217815.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	224	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGAGGCCGTTTTGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	47859687	47860032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_47859700_47860000
ENSMUST00000217887.2	chr10	-	2209	6	FSM	ENSMUSG00000069520.7	ENSMUST00000217887.2	3084	6	50	825	27	-825	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCAGAGGACTGCCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	115198102	115177471	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713
ENSMUST00000217948.2	chr10	-	2796	25	NNC	ENSMUSG00000025366.9	novel	3981	31	NA	NA	2	-3026	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGGCAAAAAATTAGACT	NA	NA	NA	NA	NA	NA	NA	NA	128361737	128349366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_128349565_128351554_128351642_128351733_128351806_128352013_128352110_128352227_128352318_128352401_128352451_128352544_128352628_128352822_128353000_128353117_128353265_128353483_128353634_128354796_128354884_128355010_128355083_128355296_128355390_128355467_128355555_128355657_128355707_128356141_128356225_128356512_128356690_128356775_128356900_128357482_128357539_128357695_128357786_128357923_128357997_128358117_128358192_128358289_128358425_128358942_128358985_128361332
ENSMUST00000217956.2	chr10	+	1335	2	FSM	ENSMUSG00000112639.2	ENSMUST00000217956.2	1770	2	106	329	106	-329	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGTTATACGTGCTAATT	NA	NA	NA	NA	NA	NA	NA	NA	126906349	126910336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_126907477_126910128
ENSMUST00000217969.2	chr10	-	608	6	FSM	ENSMUSG00000090841.3	ENSMUST00000217969.2	608	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTTCTTTCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	128329726	128326731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328579_128329407_128329436_128329677
ENSMUST00000218107.2	chr10	-	584	6	FSM	ENSMUSG00000061983.8	ENSMUST00000218107.2	584	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	NA	NA	NA	NA	NA	NA	NA	23663173	23661080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891_23662943_23663053
ENSMUST00000218184.2	chr10	+	1196	10	FSM	ENSMUSG00000055862.8	ENSMUST00000218184.2	1196	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGGAACAATTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	80538259	80541207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80538794_80538882_80538964_80539042_80539115_80539563_80539591_80539686_80539763_80539872_80539921_80540013_80540029_80540251_80540270_80540532_80540548_80540897
ENSMUST00000218190.2	chr10	+	1590	4	FSM	ENSMUSG00000112266.2	ENSMUST00000218190.2	1590	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	NA	NA	NA	NA	NA	NA	NA	14072758	14082565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_14072839_14074473_14074662_14075516_14075599_14081325
ENSMUST00000218215.2	chr10	+	1672	14	FSM	ENSMUSG00000032763.12	ENSMUST00000218215.2	2331	14	79	580	51	-567	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGACCCAGATTTCTCGAG	NA	NA	NA	NA	NA	NA	NA	NA	78410907	78419746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711
ENSMUST00000218221.2	chr10	-	460	5	FSM	ENSMUSG00000061983.8	ENSMUST00000218221.2	460	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	NA	NA	NA	NA	NA	NA	NA	23663115	23661095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23663053
ENSMUST00000218242.2	chr10	-	274	1	FSM	ENSMUSG00000112247.2	ENSMUST00000218242.2	274	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTAAGCAGTGGGATATA	NA	NA	NA	NA	NA	NA	NA	NA	66527394	66527120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_66527100_66527400
ENSMUST00000218271.2	chr10	+	1606	10	FSM	ENSMUSG00000032763.12	ENSMUST00000218271.2	1606	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACATGGTAGTGTATATT	NA	NA	NA	NA	NA	NA	NA	NA	78410856	78417593	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78417247
ENSMUST00000218435.2	chr17	+	865	6	FSM	ENSMUSG00000023826.17	ENSMUST00000218435.2	865	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGAAAAGCCCTTCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	11286011	11854333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_11286180_11456348_11456590_11522479_11522599_11653436_11653521_11711565_11711682_11854196
ENSMUST00000218521.2	chr10	+	251	1	FSM	ENSMUSG00000111897.2	ENSMUST00000218521.2	251	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGCAGAAGAAATCGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	79724545	79724796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_79724500_79724800
ENSMUST00000218568.2	chr10	-	376	3	ISM	ENSMUSG00000019948.5	ENST00000546902.5	1642	11	19	16034	19	-16034	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAAAGAAATGTATCAGG	NA	NA	NA	NA	NA	NA	NA	NA	89568107	89564034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_89564085_89564761_89564880_89567899
ENSMUST00000218666.2	chr12	+	485	2	FSM	ENSMUSG00000112336.2	ENSMUST00000218666.2	735	2	0	250	0	-250	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTCGCGGACTGCCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	80306216	80307081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_80306403_80306782
ENSMUST00000218769.2	chr10	-	1961	5	FSM	ENSMUSG00000112610.2	ENSMUST00000218769.2	1961	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGCTAGTATTCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	27574323	27522308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_27522996_27527300_27527394_27529678_27529776_27547678_27547781_27573341
ENSMUST00000218828.2	chr10	+	1789	14	FSM	ENSMUSG00000058799.17	ENSMUST00000218828.2	3934	14	51	2094	51	-63	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGTGCAAGCAGCAGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	111316528	111331917	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
ENSMUST00000218842.2	chr10	-	3902	3	FSM	ENSMUSG00000020137.6	ENSMUST00000218842.2	4970	3	0	1068	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAACAAAAACACAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	115220340	115205376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_115208852_115212256_115212453_115220109
ENSMUST00000218862.2	chr10	+	1873	8	NIC	ENSMUSG00000040033.17	novel	4394	24	NA	NA	12994	-1052	intron_retention	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCGTGGTAGGCAACCAC	NA	NA	NA	NA	NA	NA	NA	NA	128119438	128127666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_+_128119689_128119795_128119849_128119966_128120062_128120815_128120953_128121140_128121324_128121529_128121588_128126372_128126900_128127096
ENSMUST00000218893.2	chr10	-	661	6	FSM	ENSMUSG00000062981.6	ENSMUST00000218893.2	661	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCAAGTGTGTATTTCA	NA	NA	NA	NA	NA	NA	NA	NA	95337802	95316669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUST00000218973.2	chr10	-	658	3	ISM	ENSMUSG00000034667.9	ENSMUST00000039810.8	5992	25	21718	14922	21718	-14922	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAGGAGTTACTTCGCCT	NA	NA	NA	NA	NA	NA	NA	NA	121440503	121438206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_121438326_121438933_121439220_121440250
ENSMUST00000219026.2	chr10	+	1946	16	FSM	ENSMUSG00000040345.11	ENSMUST00000219026.2	1946	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	NA	NA	NA	NA	NA	NA	NA	NA	127159575	127165812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_127159700_127160213_127160329_127160987_127161069_127161391_127161500_127161712_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
ENSMUST00000219037.2	chr10	+	1383	6	FSM	ENSMUSG00000025381.4	ENSMUST00000219037.2	1383	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTTATTCAGTGTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	128158327	128163422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_128158645_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ENSMUST00000219109.2	chr10	-	1844	11	FSM	ENSMUSG00000064181.7	ENSMUST00000219109.2	1844	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGCGTGTGTCTTTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	116786336	116742681	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_116743024_116746029_116746100_116746186_116746287_116750001_116750115_116751748_116751878_116754666_116754871_116755478_116755557_116764093_116764190_116773301_116773561_116775105_116775387_116786164
ENSMUST00000219143.2	chr10	+	1365	13	FSM	ENSMUSG00000058799.17	ENSMUST00000219143.2	1365	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTTTTTTTTATTTCA	NA	NA	NA	NA	NA	NA	NA	NA	111309141	111330870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655
ENSMUST00000219159.2	chr10	+	910	1	FSM	ENSMUSG00000112856.2	ENSMUST00000219159.2	910	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACGGGACCCAGAGGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	100186954	100187864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_100187000_100187900
ENSMUST00000219165.2	chr12	-	425	1	FSM	ENSMUSG00000112413.2	ENSMUST00000219165.2	425	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAGGCCAATAAAGACTGGT	NA	NA	NA	NA	NA	NA	NA	NA	11810872	11810447	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_11810400_11810900
ENSMUST00000219216.2	chr10	+	3013	6	ISM	ENSMUSG00000034707.8	ENSMUST00000040344.7	3855	14	18025	-4	18025	4	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAATGTGTCCTTTGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	121219019	121233154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_121219349_121224005_121224108_121226528_121226637_121227275_121227387_121228585_121228747_121230952
ENSMUST00000219246.2	chr10	+	754	1	FSM	ENSMUSG00000112825.2	ENSMUST00000219246.2	754	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCATTGAACATTCCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	56373436	56374190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_56373400_56374200
ENSMUST00000219302.2	chr12	-	172	3	ISM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	219	37129	-2	-36828	internal_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGTTCGACAACATGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	54842269	54830262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_54830299_54830799_54830905_54842238
ENSMUST00000219316.2	chr12	-	775	2	ISM	ENSMUSG00000021114.10	ENST00000555474.5	1029	5	16167	16	16167	-16	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAATGATTTTAAAAACA	NA	NA	NA	NA	NA	NA	NA	NA	78892165	78889775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_78890385_78891999
ENSMUST00000219317.2	chr10	+	1109	9	FSM	ENSMUSG00000025351.15	ENSMUST00000219317.2	1109	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	NA	NA	NA	NA	NA	NA	NA	NA	128736857	128748691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_128737005_128744769_128744922_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
ENSMUST00000219381.2	chr10	+	288	2	ISM	ENSMUSG00000074781.6	ENSMUST00000099329.5	3867	4	12	4246	12	-4246	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGACAAGTTGGGAAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	95351018	95377273	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_95351100_95377066
ENSMUST00000219393.2	chr4	-	525	5	NNC	ENSMUSG00000096351.3	novel	2217	11	NA	NA	-319	-2649	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGGGGCGGTTCCAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	156340717	156334836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_156334958_156336402_156336538_156336683_156336771_156339515_156339608_156340627
ENSMUST00000219460.2	chr10	+	717	5	NNC	ENSMUSG00000004931.12	novel	2106	11	NA	NA	2834	-836	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCAAAGTTCTGTGGGCGG	NA	NA	NA	NA	NA	NA	NA	NA	81106839	81108234	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_+_81106948_81107029_81107117_81107225_81107361_81107495_81107667_81108018
ENSMUST00000219488.2	chr12	+	553	4	FSM	ENSMUSG00000066637.3	ENSMUST00000219488.2	768	4	1	214	0	-214	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTGGAGTGGATTAAAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	9080027	9091774	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_9080197_9084921_9085089_9088081_9088198_9091673
ENSMUST00000219512.2	chr10	+	776	12	FSM	ENSMUSG00000078427.4	ENSMUST00000219512.2	953	12	-3	180	0	-173	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACCCCTACCTACCTAC	NA	NA	NA	NA	NA	NA	NA	NA	128657762	128713313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_128657841_128666819_128666854_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ENSMUST00000219522.2	chr10	-	388	2	FSM	ENSMUSG00000112868.2	ENSMUST00000219522.2	388	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGATTCAAGGGTTTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	23498046	23489419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_23489780_23498018
ENSMUST00000219524.2	chr10	-	724	4	FSM	ENSMUSG00000025353.6	ENSMUST00000219524.2	724	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCAGTCTTCATAGGG	NA	NA	NA	NA	NA	NA	NA	NA	128657514	128654591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_128654885_128655822_128655975_128656129_128656305_128657410
ENSMUST00000219532.2	chr12	+	1289	2	ISM	ENSMUSG00000037669.16	ENSMUST00000169104.3	2626	6	60273	750	60273	-750	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTGTATTTCTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	8318419	8335009	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_8318599_8333899
ENSMUST00000219555.2	chr12	+	2526	1	FSM	ENSMUSG00000059970.8	ENSMUST00000219555.2	2526	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTGCTGTCTGGCGTTT	NA	NA	NA	NA	NA	NA	NA	NA	76451182	76453708	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_76451200_76453700
ENSMUST00000219558.2	chr10	+	2411	1	FSM	ENSMUSG00000039910.11	ENSMUST00000219558.2	2411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAAGAAATAAACTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	17598980	17601391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_17599000_17601400
ENSMUST00000219591.2	chr10	-	410	3	ISM	ENSMUSG00000025362.7	ENSMUST00000026420.7	681	4	506	0	506	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1637	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	128462110	128460405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128460506_128461075_128461207_128461931
ENSMUST00000219607.2	chr10	+	596	3	NNC	ENSMUSG00000035681.8	novel	2972	4	NA	NA	140916	-462	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTCACCGTCTCATAGAC	NA	NA	NA	NA	NA	NA	NA	NA	112292160	112301317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_+_112292441_112294394_112294560_112301166
ENSMUST00000219652.2	chr12	-	368	2	ISM	ENSMUSG00000020993.10	ENSMUST00000217863.2	797	5	22	8169	-12	-8169	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCCAGGTAGGTTATGAA	NA	NA	NA	NA	NA	NA	NA	NA	59108216	59098401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_59098495_59107941
ENSMUST00000219693.2	chr10	-	361	1	FSM	ENSMUSG00000112879.2	ENSMUST00000219693.2	361	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCATTCTGGTTCATCATG	NA	NA	NA	NA	NA	NA	NA	NA	123014589	123014228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_123014200_123014600
ENSMUST00000219694.2	chr12	-	207	1	FSM	ENSMUSG00000112567.2	ENSMUST00000219694.2	207	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAACAAGAAAATATTT	NA	NA	NA	NA	NA	NA	NA	NA	31308856	31308649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_31308600_31308900
ENSMUST00000219744.2	chr12	+	796	5	ISM	ENSMUSG00000061911.16	ENST00000647618.1	5627	20	119676	1856	54904	481	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAACCTTTGGAGCACAC	NA	NA	NA	NA	NA	NA	NA	NA	29945112	29971322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_29945314_29960765_29960858_29964232_29964337_29969893_29970038_29971067
ENSMUST00000219787.2	chr10	-	788	2	FSM	ENSMUSG00000112099.2	ENSMUST00000219787.2	788	2	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAGATTTTTAATAGTG	NA	NA	NA	NA	NA	NA	NA	NA	115436233	115434930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_115435647_115436161
ENSMUST00000219792.2	chr10	-	443	1	FSM	ENSMUSG00000111966.2	ENSMUST00000219792.2	443	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCCAATAAAGACTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	116809113	116808670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_116808700_116809100
ENSMUST00000219812.2	chr12	+	628	1	FSM	ENSMUSG00000112145.2	ENSMUST00000219812.2	628	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	245	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGCGCTGTTGGAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	54669375	54670003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_54669400_54670000
ENSMUST00000219869.2	chr12	-	701	4	ISM	ENSMUSG00000021025.9	ENSMUST00000021413.9	1578	6	837	997	719	-968	internal_fragment	FALSE	canonical	NA	NA	NA	NA	243	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGAGTGTTCCTCCCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	55538595	55537191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_55537452_55537555_55537645_55537904_55538116_55538454
ENSMUST00000219870.2	chr10	+	1410	6	ISM	ENSMUSG00000054452.11	ENSMUST00000002518.9	1411	7	1550	1	1550	-1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCACTGTGTCCCTGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	81396877	81402195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_81397151_81399928_81399993_81400506_81400552_81400681_81400745_81401125_81401201_81401305
ENSMUST00000219870.2-0	chr10	+	1176	6	ISM	ENSMUSG00000054452.11	ENSMUST00000002518.9	1411	7	1724	61	1724	-61	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCGCTGTACTGAGGATG	NA	NA	NA	NA	NA	NA	NA	NA	81397051	81402135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_81397151_81399928_81399993_81400506_81400552_81400681_81400745_81401125_81401201_81401305
ENSMUST00000219961.2	chr10	+	1512	14	FSM	ENSMUSG00000058799.17	ENSMUST00000219961.2	1512	14	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAGAAGAAGGAGATGAG	NA	NA	NA	NA	NA	NA	NA	NA	111309087	111331189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111330911
ENSMUST00000220041.2	chr10	+	918	10	FSM	ENSMUSG00000019998.7	ENSMUST00000220041.2	3435	10	0	2517	0	-1256	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACTGAAAGGCTGAGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	24025224	24063603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_24025307_24031132_24031283_24053063_24053134_24055014_24055109_24055823_24055962_24056760_24056814_24057415_24057513_24058666_24058740_24060884_24060968_24063525
ENSMUST00000220069.2	chr10	+	2188	2	FSM	ENSMUSG00000050953.11	ENSMUST00000220069.2	3182	2	0	994	0	-986	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTATCGACATTTTTAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	56255183	56265517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_56255484_56263629
ENSMUST00000220070.2	chr10	-	494	5	FSM	ENSMUSG00000061983.8	ENSMUST00000220070.2	494	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	NA	NA	NA	NA	NA	NA	NA	23662987	23661095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891
ENSMUST00000220077.2	chr12	-	857	1	FSM	ENSMUSG00000112096.2	ENSMUST00000220077.2	857	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTCCCACACTGGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	76392155	76391298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_76391300_76392200
ENSMUST00000220090.2	chr12	-	632	2	NNC	ENSMUSG00000044408.8	novel	1346	2	NA	NA	375	-572	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGGACGGGAGGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	54702983	54692748	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr12_-_54693321_54702923
ENSMUST00000220110.2	chr10	-	768	3	FSM	ENSMUSG00000078453.4	ENSMUST00000220110.2	768	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTTCCTGGTGGCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	17898966	17887011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_17887565_17894586_17894650_17898814
ENSMUST00000220124.2	chr10	+	847	6	ISM	ENSMUSG00000019943.11	ENST00000359142.7	7068	21	46253	3301	46253	-3301	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAAGGGTTAGAGAAGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	98850804	98858704	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_98850960_98851345_98851558_98852784_98852893_98854576_98854760_98855139_98855294_98858669
ENSMUST00000220156.2	chr10	-	1821	10	FSM	ENSMUSG00000019917.11	ENSMUST00000220156.2	1821	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATATTTTGCTCTTTCATG	NA	NA	NA	NA	NA	NA	NA	NA	59057669	58977448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_58977563_59002325_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057212
ENSMUST00000220238.2	chr12	+	2127	7	FSM	ENSMUSG00000021133.10	ENSMUST00000220238.2	2127	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGCACTGGCTGCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	80837283	80924647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_80837590_80874799_80875018_80897987_80898051_80915200_80915399_80916848_80916985_80920922_80921351_80923869
ENSMUST00000220251.2	chr10	+	676	3	FSM	ENSMUSG00000112627.2	ENSMUST00000220251.2	676	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACTGTCTCTCTCATCA	NA	NA	NA	NA	NA	NA	NA	NA	116786471	116795209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_116786598_116791432_116791563_116794789
ENSMUST00000220279.2	chr10	-	1613	2	FSM	ENSMUSG00000045867.11	ENSMUST00000220279.2	1613	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAGTGCGTGTCCATT	NA	NA	NA	NA	NA	NA	NA	NA	95158827	95010607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_95011841_95158447
ENSMUST00000220297.2	chr10	+	2268	12	FSM	ENSMUSG00000004931.12	ENSMUST00000220297.2	2268	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTGGTCAGAAGCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	81102793	81109070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_81102968_81104007_81104154_81104612_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
ENSMUST00000220314.2	chr10	+	2379	4	FSM	ENSMUSG00000112640.2	ENSMUST00000220314.2	2379	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATATTTATACTGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	81699767	81716915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_81699844_81713862_81713990_81714188_81714250_81714800
ENSMUST00000220323.2	chr10	-	837	9	NNC	ENSMUSG00000052798.14	novel	2621	26	NA	NA	47	-26267	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTACCGAGCCTTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	117628556	117613032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625961_117628508
ENSMUST00000220409.2	chr10	+	557	5	FSM	ENSMUSG00000020186.8	ENSMUST00000220409.2	780	5	15	208	0	-208	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAACTCGGTTCTGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	110756065	110774592	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_110756116_110767815_110767929_110771008_110771178_110773597_110773728_110774497
ENSMUST00000220449.2	chr13	-	2161	1	FSM	ENSMUSG00000114133.2	ENSMUST00000220449.2	2161	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	217	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCTAGCCAGAGCAATTAG	NA	NA	NA	NA	NA	NA	NA	NA	96217884	96215723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_96215700_96217900
ENSMUST00000220603.2	chr12	-	686	4	FSM	ENSMUSG00000113585.2	ENSMUST00000220603.2	686	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGGGAGTTATGTGGACA	NA	NA	NA	NA	NA	NA	NA	NA	110452050	110443247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_110443436_110444793_110445058_110450469_110450642_110451988
ENSMUST00000220643.2	chr12	+	3987	1	FSM	ENSMUSG00000092130.3	ENSMUST00000220643.2	3987	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTCCCTAGCTACTGTA	NA	NA	NA	NA	NA	NA	NA	NA	84922542	84926529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_84922500_84926500
ENSMUST00000220649.2	chr13	+	242	3	ISM	ENSMUSG00000021598.10	ENSMUST00000022089.10	913	4	1744	481	1671	-481	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGTTTCCAGAAGACAT	NA	NA	NA	NA	NA	NA	NA	NA	69959703	69963742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_69959810_69961822_69961926_69963709
ENSMUST00000220724.2	chr12	-	652	1	FSM	ENSMUSG00000113188.2	ENSMUST00000220724.2	652	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGAGGAGGGGTGTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	13487099	13486447	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_13486400_13487100
ENSMUST00000220725.2	chr13	-	801	1	FSM	ENSMUSG00000113843.2	ENSMUST00000220725.2	801	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACACTAAGTTTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	34578507	34577706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_34577700_34578500
ENSMUST00000220726.2	chr12	+	758	2	ISM	ENSMUSG00000021241.8	ENSMUST00000021667.7	883	4	446	-3	419	3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	84820470	84821862	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_84820683_84821316
ENSMUST00000220782.2	chr12	-	2736	3	FSM	ENSMUSG00000113362.2	ENSMUST00000220782.2	2736	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTTTCTTTTATAAGA	NA	NA	NA	NA	NA	NA	NA	NA	100208703	100204270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_100205964_100206343_100206424_100207740
ENSMUST00000220829.2	chr12	-	2458	1	FSM	ENSMUSG00000113476.2	ENSMUST00000220829.2	2458	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAAATAAATAACAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	13475718	13473260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_13473300_13475700
ENSMUST00000220840.2	chr13	-	489	1	FSM	ENSMUSG00000113753.2	ENSMUST00000220840.2	489	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTAATTTCTTTTGACTTG	NA	NA	NA	NA	NA	NA	NA	NA	64772574	64772085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_64772100_64772600
ENSMUST00000220899.2	chr12	-	348	2	FSM	ENSMUSG00000047832.10	ENSMUST00000220899.2	1994	2	49	1597	15	-1597	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCCACAGAGATCCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	112792994	112785453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_112785733_112792925
ENSMUST00000221040.2	chr13	-	1161	2	FSM	ENSMUSG00000114117.2	ENSMUST00000221040.2	1161	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACAGCACTGTCTGATCAG	NA	NA	NA	NA	NA	NA	NA	NA	62963337	62961782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_62962771_62963164
ENSMUST00000221062.2	chr12	+	1403	2	FSM	ENSMUSG00000113536.2	ENSMUST00000221062.2	1403	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTCTGTGAGTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	17984691	17989629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_17985255_17988789
ENSMUST00000221114.2	chr12	+	397	4	ISM	ENSMUSG00000042029.8	ENST00000356309.8	3453	27	12	39252	12	-39252	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTATAATAAATGAACATGA	NA	NA	NA	NA	NA	NA	NA	NA	116369040	116376734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_116369082_116370817_116370931_116375994_116376184_116376680
ENSMUST00000221129.2	chr12	-	1425	13	FSM	ENSMUSG00000020566.20	ENSMUST00000221129.2	1425	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTCTTTTCTTGTGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	17374731	17334725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_17334950_17335113_17335247_17338083_17338182_17341429_17341524_17341628_17341722_17344145_17344215_17344676_17344776_17347729_17347822_17351121_17351217_17358272_17358359_17371598_17371667_17373338_17373512_17374630
ENSMUST00000221154.2	chr13	+	781	1	FSM	ENSMUSG00000114003.2	ENSMUST00000221154.2	781	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1710	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGGTCTCTAGGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	3348886	3349667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_3348900_3349700
ENSMUST00000221166.2	chr12	-	981	7	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	1049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGTGTGTTCTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	65120736	65109197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116720_65116827_65120588
ENSMUST00000221170.2	chr13	+	1298	4	FSM	ENSMUSG00000048368.10	ENSMUST00000221170.2	2249	4	304	647	0	-434	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTCGTATACACAGTATT	NA	NA	NA	NA	NA	NA	NA	NA	49736241	49745651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_49736290_49741109_49741286_49742937_49743892_49745531
ENSMUST00000221180.2	chr12	-	683	4	FSM	ENSMUSG00000056359.7	ENSMUST00000221180.2	683	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATGAGAAATAATAAAACGA	NA	NA	NA	NA	NA	NA	NA	NA	73456331	73410848	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_73411115_73418153_73418265_73443102_73443254_73456176
ENSMUST00000221234.2	chr12	+	1819	5	FSM	ENSMUSG00000113302.2	ENSMUST00000221234.2	1819	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCACTTTCACGTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	70569371	70591361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_70569692_70582292_70582506_70587155_70587370_70588568_70588947_70590667
ENSMUST00000221260.2	chr13	-	2293	1	FSM	ENSMUSG00000113841.2	ENSMUST00000221260.2	2293	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTCTAAGTGGTCCATTG	NA	NA	NA	NA	NA	NA	NA	NA	62599423	62597130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_62597100_62599400
ENSMUST00000221295.2	chr12	+	556	1	FSM	ENSMUSG00000113948.2	ENSMUST00000221295.2	556	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCAGCATAAAATAAAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	67557529	67558085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_67557500_67558100
ENSMUST00000221301.2	chr12	-	1740	3	FSM	ENSMUSG00000113691.2	ENSMUST00000221301.2	1740	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAATGTGGGAAAGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	23834132	23830857	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_23832410_23833744_23833806_23834005
ENSMUST00000221330.2	chr12	-	292	1	FSM	ENSMUSG00000113681.2	ENSMUST00000221330.2	292	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	225	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGAGCGCCTTGTGACGTC	NA	NA	NA	NA	NA	NA	NA	NA	85234579	85234287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_85234300_85234600
ENSMUST00000221393.2	chr13	-	1082	6	ISM	ENSMUSG00000057531.15	ENSMUST00000220555.2	1589	10	18837	11	18837	-1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAAACACTGTGCAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	45136473	45075561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_45075931_45076624_45076769_45084471_45084628_45106647_45106671_45123521_45123655_45136216
ENSMUST00000221393.2-0	chr13	-	796	6	ISM	ENSMUSG00000057531.15	ENSMUST00000220555.2	1589	10	18975	159	18975	-149	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTGACTCAACTCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	45136335	45075709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_45075931_45076624_45076769_45084471_45084628_45106647_45106671_45123521_45123655_45136216
ENSMUST00000221422.2	chr12	-	861	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221422.2	861	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	474	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGATTCTTTTATTTATT	NA	NA	NA	NA	NA	NA	NA	NA	101942513	101934348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_101934470_101935751_101935897_101941918
ENSMUST00000221425.2	chr13	-	256	1	FSM	ENSMUSG00000112969.2	ENSMUST00000221425.2	256	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTCATGTCCTGTCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	16606365	16606109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_16606100_16606400
ENSMUST00000221481.2	chr13	+	1548	9	FSM	ENSMUSG00000054021.7	ENSMUST00000221481.2	1548	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATCAATTAGCGGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	43518971	43541132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_43519021_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43540525
ENSMUST00000221586.2	chr12	-	390	1	FSM	ENSMUSG00000113431.2	ENSMUST00000221586.2	390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCCTGCATTCCTTATTA	NA	NA	NA	NA	NA	NA	NA	NA	83667843	83667453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_83667500_83667800
ENSMUST00000221612.2	chr13	-	596	4	FSM	ENSMUSG00000079092.5	ENSMUST00000221612.2	596	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTGAAATATCATGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	13179919	13170798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_13170997_13171869_13172053_13176718_13176895_13179880
ENSMUST00000221623.2	chr12	-	724	11	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-26	-18425	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGTAATTAGAAGTTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	13299164	13287732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr12_-_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295732_13296026_13296079_13299104
ENSMUST00000221730.2	chr13	+	717	3	FSM	ENSMUSG00000021607.10	ENSMUST00000221730.2	717	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACATTAAGCATTCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	73476631	73479855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_73476740_73478978_73479211_73479478
ENSMUST00000221730.2-0	chr13	+	618	3	FSM	ENSMUSG00000021607.10	ENSMUST00000221730.2	717	3	0	99	0	-99	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCTGTAAGACCAACCCC	NA	NA	NA	NA	NA	NA	NA	NA	73476631	73479756	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_73476740_73478978_73479211_73479478
ENSMUST00000221747.2	chr13	-	2492	4	FSM	ENSMUSG00000113450.2	ENSMUST00000221747.2	2492	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAGAAGAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	62614646	62600829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_62603008_62604500_62604562_62604746_62604874_62614520
ENSMUST00000221877.2	chr12	+	2621	9	FSM	ENSMUSG00000036613.9	ENSMUST00000221877.2	4091	9	58	1412	22	1362	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGTCACCATGGGCAACC	NA	NA	NA	NA	NA	NA	NA	NA	28801859	28918452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_28802004_28810068_28810153_28816770_28816904_28878706_28878864_28897555_28897656_28909250_28909388_28912953_28913122_28914668_28914834_28916919
ENSMUST00000221892.2	chr12	-	734	5	FSM	ENSMUSG00000021079.17	ENSMUST00000221892.2	734	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGAGTATCATTGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	71183401	71169962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_71170377_71172235_71172332_71173106_71173172_71178774_71178861_71183328
ENSMUST00000221993.2	chr12	+	743	7	ISM	ENSMUSG00000019969.15	ENSMUST00000041806.13	2690	12	87	10580	87	-9556	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCGCCGTGGACTACGTT	NA	NA	NA	NA	NA	NA	NA	NA	83735012	83771289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_83735068_83746128_83746196_83746285_83746426_83759077_83759329_83761537_83761680_83769764_83769833_83771269
ENSMUST00000221996.2	chr13	-	2458	4	FSM	ENSMUSG00000074863.6	ENSMUST00000221996.2	2458	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTTCCTGGGAAAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	62832759	62819597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_62821755_62823062_62823124_62823332_62823460_62832646
ENSMUST00000222083.2	chr13	-	1140	9	NIC	ENSMUSG00000021646.10	novel	2123	17	NA	NA	43823	3	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGGGTTGTTGAGATGG	NA	NA	NA	NA	NA	NA	NA	NA	100108324	100085037	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_100085465_100088663_100088750_100090643_100090759_100091122_100091280_100095312_100095380_100097407_100097485_100100315_100100389_100104341_100104442_100108286
ENSMUST00000222174.2	chr12	-	421	1	FSM	ENSMUSG00000113178.2	ENSMUST00000222174.2	421	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAACGGAGTTTTCAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	101188676	101188255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_101188300_101188700
ENSMUST00000222193.2	chr17	-	2902	13	NNC	ENSMUSG00000059811.14	novel	2370	13	NA	NA	0	2	at_least_one_novel_splicesite	TRUE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTGGTTCTGTGGTAG	NA	NA	NA	NA	NA	NA	NA	NA	80203480	80156747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_-_80158223_80158315_80158331_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80203337
ENSMUST00000222206.2	chr12	-	1400	3	FSM	ENSMUSG00000113670.2	ENSMUST00000222206.2	1400	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGTGAGTTTCCCATGT	NA	NA	NA	NA	NA	NA	NA	NA	23010307	23003995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_23004839_23008352_23008459_23009856
ENSMUST00000222235.2	chr13	+	328	1	FSM	ENSMUSG00000113168.2	ENSMUST00000222235.2	328	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGATGACTAGACAGCAAAA	NA	NA	NA	NA	NA	NA	NA	NA	20932667	20932995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_20932700_20933000
ENSMUST00000222259.2	chr12	-	642	1	FSM	ENSMUSG00000113625.2	ENSMUST00000222259.2	642	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	319	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCTTCAATAGTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	109861527	109860885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_109860900_109861500
ENSMUST00000222276.2	chr12	+	1802	3	FSM	ENSMUSG00000017843.15	ENSMUST00000222276.2	1802	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTCTGTGCGTTTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	110413553	110417433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_110413820_110414405_110414472_110415963
ENSMUST00000222335.2	chr13	-	526	3	FSM	ENSMUSG00000113259.2	ENSMUST00000222335.2	526	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTCCACCCTGCAGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	3816722	3812349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_3812647_3815899_3816069_3816662
ENSMUST00000222343.2	chr13	+	830	5	ISM	ENSMUSG00000021610.9	ENSMUST00000022102.9	2340	17	12798	6	9081	-6	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAATATTTTTCTTAACC	NA	NA	NA	NA	NA	NA	NA	NA	73764922	73768718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_73764969_73765696_73765753_73765837_73765883_73766520_73766637_73768151
ENSMUST00000222435.2	chr13	+	938	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56023	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAGATAA	NA	NA	NA	NA	NA	NA	NA	NA	74554527	74555465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_74554500_74555500
ENSMUST00000222436.2	chr13	+	2301	3	ISM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	71161	266	71161	-266	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATGCACCCTCATAAA	NA	NA	NA	NA	NA	NA	NA	NA	13683296	13686588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_13683427_13684017_13684131_13684530
ENSMUST00000222458.2	chr12	-	617	4	ISM	ENSMUSG00000033713.13	ENST00000325117.8	1435	6	97624	140	97624	-140	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCGCCCGAGAGCGATGA	NA	NA	NA	NA	NA	NA	NA	NA	99257537	99162669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_99163073_99175719_99175826_99185856_99185923_99257495
ENSMUST00000222523.2	chr12	+	1295	3	FSM	ENSMUSG00000113642.2	ENSMUST00000222523.2	1295	3	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTCTGTGAGTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	18112091	18115611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_18112440_18113722_18113829_18114770
ENSMUST00000222575.2	chr13	+	1104	2	FSM	ENSMUSG00000113424.2	ENSMUST00000222575.2	1835	2	0	731	0	-731	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGACAAGGTGGTTATTGC	NA	NA	NA	NA	NA	NA	NA	NA	30554341	30560435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_30554700_30559689
ENSMUST00000222588.2	chr13	-	4765	29	FSM	ENSMUSG00000021585.11	ENSMUST00000222588.2	4765	29	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCTTGGCTATGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	74918855	74840486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74918664
ENSMUST00000222606.2	chr12	+	2284	12	NNC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACCTCTTTGGCTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	84363903	84390494	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr12_+_84363949_84368585_84368766_84369657_84369794_84372376_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
ENSMUST00000222632.2	chr12	+	687	4	ISM	ENSMUSG00000021012.17	ENSMUST00000021399.9	1430	7	13814	-1	13814	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGCTGTTTAATATCATT	NA	NA	NA	NA	NA	NA	NA	NA	98751094	98753107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_98751312_98751576_98751666_98751893_98752001_98752833
ENSMUST00000222667.2	chr12	-	958	1	FSM	ENSMUSG00000020644.10	ENSMUST00000222667.2	958	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAGAAAAGAAAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	25146086	25145128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_25145100_25146100
ENSMUST00000222695.2	chr12	+	2253	11	FSM	ENSMUSG00000021044.16	ENSMUST00000222695.2	2253	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGACTGTTCCTTCTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	88327417	88428490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_88327554_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
ENSMUST00000222759.2	chr13	-	1376	6	FSM	ENSMUSG00000021576.7	ENSMUST00000222759.2	1376	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTAGTTTTGGCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	74465699	74451635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_74452168_74453659_74453770_74457808_74457962_74459786_74459832_74464448_74464511_74465225
ENSMUST00000222811.2	chr12	-	859	1	FSM	ENSMUSG00000114184.2	ENSMUST00000222811.2	859	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	496	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGTTTTTATACGAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	102833748	102832889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_102832900_102833700
ENSMUST00000222812.2	chr12	-	527	2	FSM	ENSMUSG00000113722.2	ENSMUST00000222812.2	527	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTGTCTCGTCTACTC	NA	NA	NA	NA	NA	NA	NA	NA	104998536	104996875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_104997085_104998218
ENSMUST00000222930.2	chr13	-	512	4	FSM	ENSMUSG00000021606.9	ENSMUST00000222930.2	512	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTCTTCCTTTCATAAA	NA	NA	NA	NA	NA	NA	NA	NA	73476574	73467985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_73468204_73468412_73468536_73475534_73475589_73476457
ENSMUST00000222982.2	chr12	+	727	4	NIC	ENSMUSG00000021241.8	novel	883	4	NA	NA	27	-81	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATTTGGAGTTAACCTC	NA	NA	NA	NA	NA	NA	NA	NA	84820078	84821778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_+_84820146_84820369_84820452_84820566_84820683_84821316
ENSMUST00000223112.2	chr13	+	497	1	FSM	ENSMUSG00000113389.2	ENSMUST00000223112.2	497	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATATTACCCCTAACACC	NA	NA	NA	NA	NA	NA	NA	NA	15293216	15293713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_15293200_15293700
ENSMUST00000223220.2	chr12	-	2080	7	FSM	ENSMUSG00000004791.8	ENSMUST00000223220.2	2080	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTAGGATGTATGTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	85224564	85213408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_85214189_85216131_85216192_85216284_85216315_85218148_85218229_85218433_85218631_85222529_85222570_85223671
ENSMUST00000223237.2	chr6	-	1081	2	FSM	ENSMUSG00000048668.17	ENSMUST00000223237.2	1081	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATGCAGCCTCGTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	128336320	128334327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_128335157_128336068
ENSMUST00000223362.2	chr12	+	431	1	FSM	ENSMUSG00000113368.2	ENSMUST00000223362.2	431	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTTGACAATGAAAAACAG	NA	NA	NA	NA	NA	NA	NA	NA	17283612	17284043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_17283600_17284000
ENSMUST00000223377.2	chr13	+	828	2	ISM	ENSMUSG00000021476.10	ENST00000375251.7	1257	6	22591	73	22591	-73	internal_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTCTGAAGCAGAGGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	64332316	64333658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_64332573_64333086
ENSMUST00000223381.2	chr12	-	636	3	FSM	ENSMUSG00000113031.2	ENSMUST00000223381.2	636	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGAGGAGGAGGAGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	74363936	74360974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_74361283_74362065_74362187_74363729
ENSMUST00000223572.2	chr13	-	411	1	FSM	ENSMUSG00000114759.2	ENSMUST00000223572.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCCACTATGAGGGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	101083323	101082912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_101082900_101083300
ENSMUST00000223590.2	chr18	+	334	2	FSM	ENSMUSG00000024603.9	ENSMUST00000223590.2	1530	2	4	1192	4	-1192	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCTCCTGTTACCAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	60659289	60659858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_60659438_60659672
ENSMUST00000223606.2	chr13	+	540	2	ISM	ENSMUSG00000021661.17	ENSMUST00000022164.16	1755	9	0	7463	0	-7463	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAAATGAAGAGGATAGTA	NA	NA	NA	NA	NA	NA	NA	NA	98399749	98402963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_98399985_98402658
ENSMUST00000223658.2	chr14	+	659	6	ISM	ENSMUSG00000021962.10	ENST00000294241.10	1827	9	5	4426	5	-4426	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCCATTTCCCTTTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	30201635	30241021	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_30201774_30204149_30204191_30206415_30206544_30224782_30224850_30227502_30227642_30240875
ENSMUST00000223673.2	chr14	+	349	1	FSM	ENSMUSG00000114321.2	ENSMUST00000223673.2	349	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCCTAGGCCTACCCACTA	NA	NA	NA	NA	NA	NA	NA	NA	57600841	57601190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_57600800_57601200
ENSMUST00000223692.2	chr19	+	463	1	FSM	ENSMUSG00000114931.2	ENSMUST00000223692.2	463	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTATGCGTTAATAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	16693162	16693625	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_16693200_16693600
ENSMUST00000223704.2	chr18	-	2492	13	FSM	ENSMUSG00000024268.17	ENSMUST00000223704.2	2492	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAACAAGGAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	25887040	25612134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_25612769_25619850_25620023_25624197_25624282_25629278_25629360_25630521_25630588_25634257_25634408_25635989_25636138_25637195_25637340_25637545_25637626_25637946_25638076_25670733_25670813_25812469_25812553_25886398
ENSMUST00000223831.2	chr13	-	2101	5	FSM	ENSMUSG00000021327.20	ENSMUST00000223831.2	2101	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	NA	NA	NA	NA	NA	NA	NA	21586901	21571172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21586841
ENSMUST00000223863.2	chr14	-	663	4	NNC	ENSMUSG00000021820.19	novel	3564	19	NA	NA	54569	18	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCATACCATGATGCGTT	NA	NA	NA	NA	NA	NA	NA	NA	20789465	20786676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr14_-_20786921_20787326_20787572_20788908_20789012_20789394
ENSMUST00000223933.2	chr13	-	1155	1	FSM	ENSMUSG00000052957.9	ENSMUST00000223933.2	1155	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1051	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCGCCCCTGCTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	60324755	60323600	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_60323600_60324800
ENSMUST00000223965.2	chr14	+	772	4	ISM	ENSMUSG00000021945.10	ENST00000382871.3	4990	25	62889	3389	61710	-3389	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGAAGGTGTCAGACCCC	NA	NA	NA	NA	NA	NA	NA	NA	57186985	57194663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_57187136_57187633_57187786_57193636_57193752_57194308
ENSMUST00000223987.2	chr17	+	1766	4	FSM	ENSMUSG00000037089.12	ENSMUST00000223987.2	1766	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTGGTTGGCATT	NA	NA	NA	NA	NA	NA	NA	NA	45875130	45878597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_45875185_45875505_45875700_45875850_45876006_45877234
ENSMUST00000224069.2	chr14	+	1438	11	FSM	ENSMUSG00000039197.11	ENSMUST00000224069.2	1818	11	0	380	0	209	multi-exon	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTTTCAATTGTTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	21126219	21498250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_21126390_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21419138_21419175_21431570_21431686_21473570_21473658_21497881
ENSMUST00000224084.2	chrX	+	1107	7	ISM	ENSMUSG00000037369.18	ENST00000611820.5	6103	30	83630	25946	83630	-25764	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCAGCTGGCTCTGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	18112511	18120326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_18112656_18113213_18113349_18113805_18113962_18114508_18114599_18115991_18116094_18116945_18117342_18120242
ENSMUST00000224084.2-0	chrX	+	1599	7	ISM	ENSMUSG00000037369.18	ENST00000611820.5	6103	30	83653	25431	83653	-25249	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCAGCCTTAACAGCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	18112534	18120841	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_18112656_18113213_18113349_18113805_18113962_18114508_18114599_18115991_18116094_18116945_18117342_18120242
ENSMUST00000224108.2	chr14	-	934	3	ISM	ENSMUSG00000021965.4	ENSMUST00000022536.3	2260	9	16019	343	16019	-343	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTAGGAAATTTTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	58047601	58044360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_58044989_58045431_58045536_58047399
ENSMUST00000224130.2	chr13	-	820	1	FSM	ENSMUSG00000114367.2	ENSMUST00000224130.2	820	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAGAAGCAATACAAGG	NA	NA	NA	NA	NA	NA	NA	NA	106668325	106667505	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_106667500_106668300
ENSMUST00000224188.2	chr13	+	1753	11	FSM	ENSMUSG00000093930.3	ENSMUST00000224188.2	3464	11	-2	1713	-2	-1535	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGACAATTTTGCAGATTA	NA	NA	NA	NA	NA	NA	NA	NA	120151997	120168083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_120152050_120156524_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
ENSMUST00000224249.2	chr13	-	727	2	NIC	ENSMUSG00000021495.11	novel	2949	9	NA	NA	27633	-2363	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAACTGGACCAACTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	55691280	55689491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_55689535_55690596
ENSMUST00000224300.2	chr13	+	2299	3	FSM	ENSMUSG00000035840.8	ENSMUST00000224300.2	4250	3	166	1785	0	-98	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATTTGGCTAATTAGTA	NA	NA	NA	NA	NA	NA	NA	NA	81805947	81819205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_81806056_81813123_81813389_81817279
ENSMUST00000224479.2	chr13	+	4212	2	FSM	ENSMUSG00000035367.10	ENSMUST00000224479.2	4212	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTGAAAGAATGTTTATA	NA	NA	NA	NA	NA	NA	NA	NA	58552879	58557910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_58554905_58555723
ENSMUST00000224568.2	chr14	+	714	6	FSM	ENSMUSG00000025290.18	ENSMUST00000224568.2	714	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTCTGAGAGGACAAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	24540834	24545891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_24541093_24541817_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
ENSMUST00000224572.2	chr13	-	1004	2	ISM	ENSMUSG00000021495.11	ENSMUST00000225240.3	2950	9	27342	3313	27342	-3313	internal_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGTGGAGATGGATGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	55691571	55690441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_55690471_55690596
ENSMUST00000224599.2	chr19	+	981	5	FSM	ENSMUSG00000024780.8	ENSMUST00000224599.2	1769	5	15	773	0	-773	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTATTAGTTAGGGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	28967899	28985294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972
ENSMUST00000224611.2	chr13	+	1750	8	FSM	ENSMUSG00000021420.14	ENSMUST00000224611.2	1750	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGCATTTGTCTTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	36301857	36721571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_36301989_36332343_36332428_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
ENSMUST00000224618.2	chr17	+	412	3	ISM	ENSMUSG00000036368.9	ENST00000417700.6	941	9	0	29910	0	-29910	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTAATTCGTCAGCACT	NA	NA	NA	NA	NA	NA	NA	NA	79934097	79959230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_79934232_79957730_79957906_79959127
ENSMUST00000224633.2	chr14	+	557	2	FSM	ENSMUSG00000063787.5	ENSMUST00000224633.2	557	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAGTTGGCCATTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	20753218	20754487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_20753477_20754188
ENSMUST00000224685.2	chr13	-	454	3	NNC	ENSMUSG00000034789.9	novel	1168	8	NA	NA	1409	5	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCACTGGGTGTCAAA	NA	NA	NA	NA	NA	NA	NA	NA	55468349	55467692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr13_-_55468050_55468124_55468188_55468315
ENSMUST00000224707.2	chr19	-	1255	7	FSM	ENSMUSG00000024889.6	ENSMUST00000224707.2	1255	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTGGAACCTTGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	4675361	4672618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675121_4675220
ENSMUST00000224711.2	chr17	+	2066	17	FSM	ENSMUSG00000024068.9	ENSMUST00000224711.2	2066	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTCAAGGCCTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	74645981	74695481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_74646441_74658947_74659032_74663080_74663165_74666248_74666345_74674242_74674431_74675822_74675957_74676186_74676281_74678424_74678500_74679253_74679326_74680278_74680355_74680657_74680750_74681117_74681198_74682077_74682121_74684035_74684116_74688964_74689036_74694028_74694070_74695184
ENSMUST00000224746.2	chr13	-	656	4	FSM	ENSMUSG00000114958.2	ENSMUST00000224746.2	656	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCGTCGTGCTCGGGTCG	NA	NA	NA	NA	NA	NA	NA	NA	47494415	47488726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_47488818_47488928_47489024_47492239_47492498_47494203
ENSMUST00000224893.2	chr14	+	496	2	ISM	ENSMUSG00000021981.11	ENST00000355854.8	1720	9	67	50475	67	-50475	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	285	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGACAGACAAGGTATG	NA	NA	NA	NA	NA	NA	NA	NA	59716264	59734378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_59716634_59734251
ENSMUST00000224905.2	chr17	+	1211	4	FSM	ENSMUSG00000037089.12	ENSMUST00000224905.2	1906	4	150	545	60	-120	multi-exon	FALSE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGGGACTGGGAGTAGCT	NA	NA	NA	NA	NA	NA	NA	NA	45874949	45878051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45877234
ENSMUST00000224905.2-1	chr17	+	1248	4	FSM	ENSMUSG00000037089.12	ENSMUST00000224905.2	1906	4	0	658	0	-233	multi-exon	FALSE	canonical	NA	NA	NA	NA	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTACACCATTGGACAAT	NA	NA	NA	NA	NA	NA	NA	NA	45874799	45877938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45877234
ENSMUST00000224935.2	chr13	-	429	2	FSM	ENSMUSG00000114662.2	ENSMUST00000224935.2	887	2	232	226	232	-226	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTGCTCAACTTCTAAC	NA	NA	NA	NA	NA	NA	NA	NA	41071139	41061033	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_41061214_41070890
ENSMUST00000225023.2	chr14	+	1613	5	FSM	ENSMUSG00000025290.18	ENSMUST00000225023.2	1613	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATCTTGGGACTGGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	24540785	24547027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545842
ENSMUST00000225039.2	chr14	+	1401	8	ISM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	18868	1096	18868	-1096	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCAGACTCTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	30289955	30295581	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
ENSMUST00000225139.2	chr14	+	860	4	ISM	ENSMUSG00000040651.10	ENST00000683822.1	5648	24	48217	597	48217	-597	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATCTCCATTAAGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	27199126	27203334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_27199178_27201585_27201765_27201880_27202049_27202872
ENSMUST00000225150.2	chr13	-	1342	1	FSM	ENSMUSG00000114547.2	ENSMUST00000225150.2	1342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	755	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAAGTCCATTCCTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	112731618	112730276	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_112730300_112731600
ENSMUST00000225186.2	chr13	+	2627	14	FSM	ENSMUSG00000062822.9	ENSMUST00000225186.2	2627	14	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTTCATTTCTTACATCA	NA	NA	NA	NA	NA	NA	NA	NA	119599307	119622656	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_119599656_119601100_119601227_119602609_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
ENSMUST00000225294.2	chr14	-	785	5	FSM	ENSMUSG00000033111.17	ENSMUST00000225294.2	1191	5	43	363	43	-117	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGGAACAGAAGCAGGAACA	NA	NA	NA	NA	NA	NA	NA	NA	10185462	10168146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185429
ENSMUST00000225432.2	chr13	-	1471	10	FSM	ENSMUSG00000021432.16	ENSMUST00000225432.2	2216	10	166	579	-129	-414	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAATTCACTTTGCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	39144634	39116694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39128475_39128631_39138084_39138207_39139624_39139913_39144407
ENSMUST00000225475.2	chr19	-	1025	8	NNC	ENSMUSG00000024908.16	novel	2950	19	NA	NA	73241	-484	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGCCCATGTAATAATAGTA	NA	NA	NA	NA	NA	NA	NA	NA	3521005	3506733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_3507052_3509360_3509481_3509746_3509765_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970
ENSMUST00000225476.2	chr19	-	1455	8	NNC	ENSMUSG00000024889.6	novel	1425	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTGGAACCTTGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	4675669	4672618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674687_4674792_4675040_4675125_4675220_4675324_4675460
ENSMUST00000225504.2	chr14	-	457	4	NNC	ENSMUSG00000021951.8	novel	880	5	NA	NA	1640	-901	at_least_one_novel_splicesite	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTTGCCTGAGAGAATCG	NA	NA	NA	NA	NA	NA	NA	NA	57807386	57787955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr14_-_57788100_57795490_57795574_57803378_57803542_57807319
ENSMUST00000225529.2	chr19	+	686	8	FSM	ENSMUSG00000024983.11	ENSMUST00000225529.2	1244	8	62	496	6	-496	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTTGTAGGGCTTTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	55304788	55564937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487737_55564905
ENSMUST00000225539.2	chr13	-	737	4	FSM	ENSMUSG00000114274.2	ENSMUST00000225539.2	737	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGGTAGAGCTGAATTTA	NA	NA	NA	NA	NA	NA	NA	NA	60582545	60570569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_60570880_60571789_60571861_60574371_60574543_60582360
ENSMUST00000225588.2	chr13	-	409	1	FSM	ENSMUSG00000114540.2	ENSMUST00000225588.2	409	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	204	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCCACTATGAGGGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	117495156	117494747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_117494700_117495200
ENSMUST00000225738.2	chrX	+	1049	8	ISM	ENSMUSG00000037369.18	ENST00000382899.9	5786	29	-6	43136	-6	-43136	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGTGAAAAAGAAATATACA	NA	NA	NA	NA	NA	NA	NA	NA	18028875	18102954	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899
ENSMUST00000225780.2	chr19	+	2032	13	FSM	ENSMUSG00000015176.12	ENSMUST00000225780.2	2978	13	113	833	29	-331	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCTCCATCTCTGTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	46064492	46072559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_46064589_46067141_46067198_46067311_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
ENSMUST00000225791.2	chr14	+	3976	17	ISM	ENSMUSG00000021806.5	ENSMUST00000022340.5	4876	21	19	5657	19	-5657	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATGTAGACCCGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	19801351	19856198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910
ENSMUST00000225803.2	chr13	-	793	1	FSM	ENSMUSG00000114738.2	ENSMUST00000225803.2	793	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTAAATGTACACTGAATT	NA	NA	NA	NA	NA	NA	NA	NA	101046397	101045604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_101045600_101046400
ENSMUST00000225868.2	chr13	-	3081	15	FSM	ENSMUSG00000042167.7	ENSMUST00000225868.2	3081	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTTGAGGTGTTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	93328893	93282789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_93284174_93285388_93285469_93287191_93287284_93291432_93291570_93296152_93296197_93304433_93304563_93304898_93304976_93308330_93308401_93311147_93311215_93312026_93312119_93312205_93312321_93320586_93320825_93322315_93322406_93322810_93322985_93328601
ENSMUST00000225871.2	chr14	-	3124	7	FSM	ENSMUSG00000114378.2	ENSMUST00000225871.2	3124	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATCTTCTTAAAACTTCT	NA	NA	NA	NA	NA	NA	NA	NA	10185787	10145308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_10147633_10162545_10162640_10168516_10168616_10172106_10172182_10173015_10173142_10182369_10182494_10185505
ENSMUST00000225891.2	chr14	+	512	7	NNC	ENSMUSG00000053453.10	novel	937	8	NA	NA	62	-23	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATTGGAGAGTAAGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	8508556	8519620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr14_+_8508579_8515106_8515198_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561
ENSMUST00000225901.2	chr13	-	1217	1	FSM	ENSMUSG00000114551.2	ENSMUST00000225901.2	1217	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCCAGGACCACTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	115666308	115665091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_115665100_115666300
ENSMUST00000225970.2	chr13	+	1032	4	FSM	ENSMUSG00000114372.2	ENSMUST00000225970.2	1032	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAAATAATAAAAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	83213575	83342466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_83214068_83214346_83214382_83243923_83243973_83342010
ENSMUST00000225972.2	chr13	+	1447	3	FSM	ENSMUSG00000071180.6	ENSMUST00000225972.2	2097	3	-39	689	0	244	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTTCTGACGTTAGC	NA	NA	NA	NA	NA	NA	NA	NA	108180983	108185017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_108181243_108182958_108183103_108183973
ENSMUST00000226072.2	chr14	+	578	3	NNC	ENSMUSG00000063787.5	novel	616	3	NA	NA	52	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCATTTCTTCTAATT	NA	NA	NA	NA	NA	NA	NA	NA	20753125	20754493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr14_+_20753266_20753343_20753477_20754188
ENSMUST00000226086.2	chr17	+	525	4	FSM	ENSMUSG00000037089.12	ENSMUST00000226086.2	850	4	-12	337	-12	-337	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCTCAAATCCAAACGCC	NA	NA	NA	NA	NA	NA	NA	NA	45874873	45876644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45876589
ENSMUST00000226152.2	chr15	-	591	4	ISM	ENSMUSG00000037458.16	ENST00000347770.8	2856	13	24907	1857	24877	-1857	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGTGATTTTATTAAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	38494630	38491717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_38491935_38492487_38492604_38493717_38493881_38494535
ENSMUST00000226168.2	chr14	+	828	5	FSM	ENSMUSG00000022210.8	ENSMUST00000226168.2	828	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTAGTCTCTGGGTCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	55716331	55725034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724716
ENSMUST00000226208.3	chr17	+	2407	6	FSM	ENSMUSG00000044477.13	ENSMUST00000226208.3	3039	6	0	632	0	-630	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAAGGTCTGCTCTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	30223706	30428364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_30224283_30279783_30279825_30354296_30354480_30372276_30372343_30411536_30411705_30426991
ENSMUST00000226221.2	chr15	+	1476	7	FSM	ENSMUSG00000036561.10	ENSMUST00000226221.2	2559	7	33	1050	0	-1050	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAAGGCTTTGCTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	89095803	89143825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_89095983_89126362_89126492_89127507_89127663_89130460_89130544_89137221_89137454_89140911_89141053_89143268
ENSMUST00000226238.2	chr15	+	654	6	NNC	ENSMUSG00000022556.12	novel	2084	13	NA	NA	20662	-450	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTCCTACTTCTCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	76382435	76384718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_76382491_76382636_76382892_76384147_76384254_76384330_76384397_76384466_76384537_76384616
ENSMUST00000226257.2	chr15	-	3500	2	ISM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	5455	506	1876	-506	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	787	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCTATTTGTCCTGTTGA	NA	NA	NA	NA	NA	NA	NA	NA	37002191	36997776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_37001168_37002082
ENSMUST00000226267.2	chr15	-	309	3	ISM	ENSMUSG00000047394.10	ENST00000403326.5	503	4	768	56	485	-56	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTGCCACCCCGAGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	89262643	89261994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_89262076_89262302_89262425_89262537
ENSMUST00000226336.2	chr15	+	2547	5	NNC	ENSMUSG00000022338.9	novel	3000	5	NA	NA	3	-447	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	453	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGATTTAAAAAATGGCA	NA	NA	NA	NA	NA	NA	NA	NA	44291510	44301205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_44291639_44292955_44293033_44295833_44295905_44297296_44297370_44299007
ENSMUST00000226435.2	chr2	+	1543	5	FSM	ENSMUSG00000026655.16	ENSMUST00000226435.2	3602	5	0	2059	0	296	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTCTGAGAACCCAGATT	NA	NA	NA	NA	NA	NA	NA	NA	3571524	3781120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_3572092_3649264_3649323_3773832_3774017_3779454_3779606_3780537
ENSMUST00000226490.2	chr14	+	3000	2	FSM	ENSMUSG00000115817.2	ENSMUST00000226490.2	3000	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAGAAGAACAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	77018266	77021652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_77018362_77018747
ENSMUST00000226515.2	chr14	-	773	1	FSM	ENSMUSG00000115584.2	ENSMUST00000226515.2	773	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTACACTGAGTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	102220199	102219426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_102219400_102220200
ENSMUST00000226522.2	chr14	-	2804	5	FSM	ENSMUSG00000049295.18	ENSMUST00000226522.2	2804	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTCTGCCTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	52252039	52243533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52251962
ENSMUST00000226572.2	chr14	+	559	1	FSM	ENSMUSG00000115160.2	ENSMUST00000226572.2	559	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGAAGATTTGGATCTGA	NA	NA	NA	NA	NA	NA	NA	NA	44502500	44503059	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_44502500_44503100
ENSMUST00000226722.2	chr14	-	935	5	ISM	ENSMUSG00000022108.9	ENSMUST00000022704.9	1796	6	16784	659	16693	8	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAACCTTTCTTTTTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	73605945	73600324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738
ENSMUST00000226751.2	chr14	-	381	1	FSM	ENSMUSG00000115194.2	ENSMUST00000226751.2	381	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAACTTGATCCAAAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	48933438	48933057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_48933100_48933400
ENSMUST00000226753.2	chr14	-	2126	11	FSM	ENSMUSG00000000958.11	ENSMUST00000226753.2	2126	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	NA	NA	NA	NA	NA	NA	NA	54655136	54606898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54655113
ENSMUST00000226782.2	chr14	-	949	4	FSM	ENSMUSG00000021917.17	ENSMUST00000226782.2	949	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACATTTGTTTTCTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	30723566	30721782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_30722180_30722634_30722722_30722800_30722861_30723161
ENSMUST00000226812.2	chr15	-	2265	6	FSM	ENSMUSG00000115326.2	ENSMUST00000226812.2	2265	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGAAGATGTCCCTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	37899960	37893238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_37893329_37893486_37894139_37895034_37895417_37896953_37897999_37899430_37899443_37899876
ENSMUST00000226825.2	chr15	-	2445	7	NNC	ENSMUSG00000022340.16	novel	3026	7	NA	NA	611	169	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATAAAAATGTACTTGT	NA	NA	NA	NA	NA	NA	NA	NA	44611184	44535530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_-_44537045_44538761_44538912_44540930_44541135_44546743_44546847_44582183_44582382_44609641_44609859_44611125
ENSMUST00000226827.2	chr15	+	366	5	FSM	ENSMUSG00000022338.9	ENSMUST00000226827.2	558	5	35	157	15	-157	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGATTTATTTCTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	44291522	44299106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_44291567_44292955_44293033_44295833_44295905_44297294_44297370_44299007
ENSMUST00000226902.2	chr14	+	537	5	NIC	ENSMUSG00000022210.8	novel	1392	8	NA	NA	-26	-192	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCAGTTACATCAATGGAG	NA	NA	NA	NA	NA	NA	NA	NA	55716376	55727329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_+_55716491_55717482_55717661_55725040_55725176_55725616_55725673_55727275
ENSMUST00000226914.2	chr14	+	150	1	FSM	ENSMUSG00000115133.2	ENSMUST00000226914.2	150	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTAAGGATTCACACAGCG	NA	NA	NA	NA	NA	NA	NA	NA	120314921	120315071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_120314900_120315100
ENSMUST00000226975.2	chr14	+	1462	13	FSM	ENSMUSG00000071547.5	ENST00000459839.5	1614	13	221	-69	221	-10	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTCTCAGAGCCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	30853307	30861068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_30853334_30856695_30856881_30857294_30857351_30857450_30857545_30857642_30857772_30857874_30857936_30858021_30858125_30858224_30858327_30858552_30858635_30860080_30860168_30860288_30860430_30860565_30860631_30860737
ENSMUST00000227012.2	chr14	+	1747	8	FSM	ENSMUSG00000022139.18	ENSMUST00000227012.2	2390	8	24	619	1	-619	multi-exon	FALSE	canonical	NA	NA	NA	NA	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTACATATTACCCCGTTT	NA	NA	NA	NA	NA	NA	NA	NA	120513141	120666419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_120513318_120562205_120562825_120616561_120616727_120622802_120623004_120626311_120626576_120633862_120634017_120642049_120642145_120666346
ENSMUST00000227096.2	chr14	+	1848	14	FSM	ENSMUSG00000071547.5	ENSMUST00000227096.2	1848	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTGCTTCATTCCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	30853009	30861081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_30853334_30856695_30856881_30856986_30857062_30857294_30857351_30857450_30857545_30857642_30857772_30857874_30857936_30858021_30858125_30858224_30858327_30858552_30858635_30860080_30860168_30860288_30860430_30860565_30860631_30860737
ENSMUST00000227191.3	chr15	+	4230	15	FSM	ENSMUSG00000048424.19	ENSMUST00000227191.3	4230	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCTTACATCCTTTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	8997485	9067417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_8998001_9029610_9029670_9030448_9030489_9030912_9030991_9031517_9031593_9035580_9035653_9037143_9037287_9041758_9041866_9043848_9043934_9055763_9055867_9057188_9057314_9058727_9058849_9060828_9060972_9063023_9063214_9065043
ENSMUST00000227257.2	chr14	-	622	3	FSM	ENSMUSG00000022193.8	ENSMUST00000227257.2	622	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGTGGAGTCCACAGTTA	NA	NA	NA	NA	NA	NA	NA	NA	54855465	54851577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_54851939_54854232_54854279_54855250
ENSMUST00000227305.2	chr15	-	3124	8	FSM	ENSMUSG00000022340.16	ENSMUST00000227305.2	3124	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTCTCCTATAATTAT	NA	NA	NA	NA	NA	NA	NA	NA	44615854	44535251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_44537045_44538761_44538912_44540930_44541135_44546743_44546847_44582183_44582382_44609641_44609856_44611704_44611795_44615482
ENSMUST00000227365.2	chr15	+	608	1	FSM	ENSMUSG00000115193.2	ENSMUST00000227365.2	608	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCCAATAAATACTGTT	NA	NA	NA	NA	NA	NA	NA	NA	23489976	23490584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_23490000_23490600
ENSMUST00000227458.2	chr14	-	1683	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227458.2	1683	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTTGAAGGAAAGACAAT	NA	NA	NA	NA	NA	NA	NA	NA	52341460	52311909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUST00000227468.2	chr14	-	361	5	FSM	ENSMUSG00000037722.9	ENSMUST00000227468.2	1490	5	832	297	832	-141	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTGTTACAAGATCACCC	NA	NA	NA	NA	NA	NA	NA	NA	45622109	45615907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037
ENSMUST00000227536.2	chr14	-	1301	8	FSM	ENSMUSG00000060373.16	ENSMUST00000227536.2	1301	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	NA	NA	NA	NA	NA	NA	NA	NA	52341426	52312255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
ENSMUST00000227553.2	chr14	+	383	1	FSM	ENSMUSG00000060143.8	ENSMUST00000073238.7	384	1	1	0	1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	105919262	105919645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_105919300_105919600
ENSMUST00000227583.2	chr14	-	781	3	ISM	ENSMUSG00000015759.12	ENST00000553660.5	759	4	8014	-79	8014	79	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	573	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCTCACTTATCACTGTA	NA	NA	NA	NA	NA	NA	NA	NA	47017719	47013519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_47014007_47016345_47016490_47017569
ENSMUST00000227640.2	chr14	-	1632	5	FSM	ENSMUSG00000022120.5	ENSMUST00000227640.2	1632	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGAGCTGATTATTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	104760081	104739821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_104740872_104743528_104743778_104745374_104745467_104747737_104747874_104759976
ENSMUST00000227691.2	chr15	+	1945	7	FSM	ENSMUSG00000022339.10	ENSMUST00000227691.2	1945	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAACTGATTTTCTGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	44482570	44504911	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_44482766_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
ENSMUST00000227725.2	chr15	-	2618	19	FSM	ENSMUSG00000022350.8	ENSMUST00000227725.2	2618	19	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTTGCCCTGCTTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	59224378	59203845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_59204209_59205466_59205555_59206936_59207091_59209041_59209139_59210762_59210893_59211662_59211767_59212740_59212821_59212908_59213012_59213787_59213951_59215873_59215999_59217186_59217367_59218062_59218165_59218668_59218750_59220233_59220375_59221141_59221253_59221980_59222057_59222135_59222303_59223320_59223434_59224138
ENSMUST00000227734.2	chr15	-	797	1	FSM	ENSMUSG00000115188.2	ENSMUST00000227734.2	797	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTATGCTGAATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	31655712	31654915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_31654900_31655700
ENSMUST00000227794.2	chr14	+	1858	13	FSM	ENSMUSG00000071547.5	ENSMUST00000227794.2	1858	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTGCTTCATTCCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	30856361	30861081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_30856881_30856986_30857062_30857294_30857351_30857450_30857545_30857642_30857772_30857874_30857936_30858021_30858125_30858224_30858327_30858552_30858635_30860080_30860168_30860288_30860430_30860565_30860631_30860737
ENSMUST00000227806.2	chr2	-	944	3	FSM	ENSMUSG00000115423.3	ENSMUST00000227806.2	944	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGCTGCCTTCACAAGT	NA	NA	NA	NA	NA	NA	NA	NA	136733309	136723190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_136723560_136727392_136727621_136732962
ENSMUST00000227885.2	chr15	+	646	1	FSM	ENSMUSG00000115457.2	ENSMUST00000227885.2	646	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTCAATAGTTCTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	51952703	51953349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_51952700_51953300
ENSMUST00000227912.2	chr15	+	888	2	ISM	ENSMUSG00000052253.7	ENSMUST00000061875.8	2802	6	0	11614	0	-11614	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCAGCGGCTGAGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	25984451	25986953	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_25985270_25986883
ENSMUST00000228037.2	chr14	-	580	6	NIC	ENSMUSG00000014496.9	novel	6712	28	NA	NA	260	-43429	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCTAGTGGAATGATCAG	NA	NA	NA	NA	NA	NA	NA	NA	31552335	31467231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_31467321_31468869_31468958_31470599_31470801_31477689_31477761_31486210_31486290_31552283
ENSMUST00000228057.2	chr15	-	3026	7	FSM	ENSMUSG00000022340.16	ENSMUST00000228057.2	3026	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTTTGTCTCCTATAAT	NA	NA	NA	NA	NA	NA	NA	NA	44612068	44535254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_44537045_44538761_44538912_44540930_44541135_44546743_44546847_44582183_44582382_44609641_44609859_44611704
ENSMUST00000228087.2	chr15	-	1694	13	FSM	ENSMUSG00000033565.19	ENSMUST00000228087.2	1694	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATTTCCACGTCTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	77037954	76967999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77037729
ENSMUST00000228343.2	chr14	-	1768	1	FSM	ENSMUSG00000115785.2	ENSMUST00000228343.2	1768	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	402	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCTTTGGAGGTCTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	53100209	53098441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_53098400_53100200
ENSMUST00000228417.2	chr14	+	389	1	FSM	ENSMUSG00000115028.2	ENSMUST00000228417.2	389	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATACTAGGTGTTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	121064569	121064958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_121064600_121065000
ENSMUST00000228426.2	chr15	+	318	1	FSM	ENSMUSG00000115017.2	ENSMUST00000228426.2	318	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGCCACCTAGGAGGGTT	NA	NA	NA	NA	NA	NA	NA	NA	12181232	12181550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_12181200_12181600
ENSMUST00000228580.2	chr14	-	2812	4	FSM	ENSMUSG00000049295.18	ENSMUST00000228580.2	2812	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	52258158	52243538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52257979
ENSMUST00000228591.2	chr14	+	721	5	FSM	ENSMUSG00000115324.2	ENSMUST00000228591.2	721	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGGAAGGAAGACTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	45767814	45782344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_45767989_45770629_45770763_45781054_45781247_45781731_45781815_45782205
ENSMUST00000228649.2	chr15	-	492	1	FSM	ENSMUSG00000115593.2	ENSMUST00000228649.2	492	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTAATTTCTTTTGACTTG	NA	NA	NA	NA	NA	NA	NA	NA	25840697	25840205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_25840200_25840700
ENSMUST00000228671.2	chr15	+	1121	5	FSM	ENSMUSG00000022200.9	ENSMUST00000228671.2	2842	5	0	1721	0	-1395	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTCCCACACTAATAAT	NA	NA	NA	NA	NA	NA	NA	NA	12321720	12349956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_12322043_12339713_12339846_12343122_12343238_12343358_12343408_12349453
ENSMUST00000228736.2	chr14	-	702	4	FSM	ENSMUSG00000021917.17	ENSMUST00000228736.2	702	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACATTTGTTTTCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	30723320	30721783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_30722180_30722634_30722722_30722800_30722861_30723161
ENSMUST00000228748.2	chr14	-	1691	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228748.2	1691	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGAAGGAAAGACAATT	NA	NA	NA	NA	NA	NA	NA	NA	52341464	52311908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUST00000228767.2	chr14	-	1008	4	FSM	ENSMUSG00000021917.17	ENSMUST00000228767.2	1008	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACATTTGTTTTCTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	30723629	30721782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_30722180_30722634_30722718_30722800_30722861_30723161
ENSMUST00000228767.2-0	chr14	-	783	4	FSM	ENSMUSG00000021917.17	ENSMUST00000228767.2	1008	4	225	0	-80	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACATTTGTTTTCTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	30723404	30721782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_30722180_30722634_30722718_30722800_30722861_30723161
ENSMUST00000228819.2	chr14	-	490	1	FSM	ENSMUSG00000115312.2	ENSMUST00000228819.2	490	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACAAGTTCTCCGTGTCCC	NA	NA	NA	NA	NA	NA	NA	NA	51216393	51215903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_51215900_51216400
ENSMUST00000229019.2	chr15	-	941	10	FSM	ENSMUSG00000115987.2	ENSMUST00000229019.2	941	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	NA	NA	NA	NA	NA	NA	NA	NA	76510206	76506308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508919_76509333_76509406_76510188
ENSMUST00000229085.2	chr15	-	1270	11	NNC	ENSMUSG00000022570.8	novel	1355	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	75801627	75796524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800362_75800740_75800899_75801567
ENSMUST00000229101.2	chr16	+	1358	11	FSM	ENSMUSG00000055447.20	ENSMUST00000229101.2	1358	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	49675995	49731444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49731231
ENSMUST00000229131.2	chr15	+	586	1	FSM	ENSMUSG00000116090.2	ENSMUST00000229131.2	586	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	983	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAAGCTTCCCTCCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	8004555	8005141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_8004600_8005100
ENSMUST00000229163.2	chr15	-	755	1	FSM	ENSMUSG00000116089.2	ENSMUST00000229163.2	755	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATCTGCATTTTCTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	68587612	68586857	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_68586900_68587600
ENSMUST00000229348.2	chr15	-	1069	8	FSM	ENSMUSG00000023755.11	ENSMUST00000229348.2	1069	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	98779157	98775658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777645_98777726_98778388_98778461_98779030
ENSMUST00000229428.2	chr15	+	922	8	FSM	ENSMUSG00000052369.9	ENSMUST00000229428.2	1455	8	41	492	40	105	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAGAAACCCGCAGAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	97862150	97867663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_97862217_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
ENSMUST00000229432.2	chr15	+	1489	7	ISM	ENSMUSG00000056851.15	ENST00000455667.7	2547	12	9918	591	9864	-589	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTTGTTCACAGGGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	102391632	102407905	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
ENSMUST00000229494.2	chr15	-	1114	3	ISM	ENSMUSG00000022526.9	ENSMUST00000080406.7	4036	4	1052	2108	1052	-2108	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGGCGAGAAGCCCTACG	NA	NA	NA	NA	NA	NA	NA	NA	76754583	76737916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76738815_76754006_76754121_76754481
ENSMUST00000229503.2	chr16	-	924	6	ISM	ENSMUSG00000022533.15	ENST00000642744.1	6683	31	33016	3135	33016	-3135	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGTACGATTATTAACTA	NA	NA	NA	NA	NA	NA	NA	NA	30152708	30134375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_30134720_30140623_30140714_30141689_30141771_30147773_30147863_30151016_30151205_30152576
ENSMUST00000229618.2	chr15	+	1282	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229618.2	1576	14	24	270	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAGTTTGTAAATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	102379111	102407046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUST00000229641.2	chr15	-	1355	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229641.2	1355	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	75801681	75796524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801567
ENSMUST00000229700.2	chr15	+	240	1	FSM	ENSMUSG00000116475.2	ENSMUST00000229700.2	240	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCAGCTGGGATCATCTA	NA	NA	NA	NA	NA	NA	NA	NA	76034567	76034807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76034600_76034800
ENSMUST00000229728.2	chr15	+	1415	4	FSM	ENSMUSG00000044217.18	ENSMUST00000229728.2	1415	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTGTGCCTTCATCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	99489031	99492702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_99489516_99490547_99490708_99491126_99491211_99492015
ENSMUST00000229739.2	chr15	+	1311	2	FSM	ENSMUSG00000071711.13	ENSMUST00000229739.2	1311	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAACATTTGTGGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	78294181	78298206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_78294865_78297578
ENSMUST00000229805.2	chr15	+	377	4	NNC	ENSMUSG00000023051.12	novel	912	6	NA	NA	-20	-1378	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACCGCAAAGAGTTCACC	NA	NA	NA	NA	NA	NA	NA	NA	102426873	102430479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_102427038_102429572_102429649_102430158_102430232_102430415
ENSMUST00000229807.2	chr15	+	1106	4	FSM	ENSMUSG00000116068.2	ENSMUST00000229807.2	1106	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCATCTGCTTCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	72033194	72159163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_72033606_72044007_72044140_72091726_72091872_72158745
ENSMUST00000229940.2	chr15	-	214	2	ISM	ENSMUSG00000022568.18	ENST00000674084.1	5146	35	21735	203	21735	-203	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCTGCCAGCTTCATCAC	NA	NA	NA	NA	NA	NA	NA	NA	75919508	75919211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75919387_75919469
ENSMUST00000229951.2	chr15	-	1405	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229951.2	1405	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	75801575	75796524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798138_75798307_75798591_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
ENSMUST00000230062.2	chr15	+	651	5	FSM	ENSMUSG00000022400.10	ENSMUST00000230062.2	651	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACGAGGAACCTGTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	81350841	81359587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_81350956_81352355_81352435_81355152_81355224_81358043_81358130_81359286
ENSMUST00000230118.2	chr15	-	544	2	FSM	ENSMUSG00000115976.2	ENSMUST00000230118.2	544	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGTACCGTTGTGAACT	NA	NA	NA	NA	NA	NA	NA	NA	80890611	80889607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_80889892_80890351
ENSMUST00000230209.2	chr6	-	577	2	FSM	ENSMUSG00000044471.13	ENSMUST00000230209.2	1490	2	74	839	59	-839	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTACCAACGATCTGCG	NA	NA	NA	NA	NA	NA	NA	NA	31197349	31195847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_31196071_31196995
ENSMUST00000230219.2	chr15	+	555	3	FSM	ENSMUSG00000022400.10	ENSMUST00000230219.2	555	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGACCATTTAAGGCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	81350544	81355521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_81350652_81352355_81352435_81355152
ENSMUST00000230234.2	chr15	+	287	2	FSM	ENSMUSG00000116004.2	ENSMUST00000230234.2	511	2	0	224	0	-224	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGGCTGCAGGCTCGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	85530283	85551652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_85530497_85551578
ENSMUST00000230268.2	chr15	-	183	2	ISM	ENSMUSG00000022453.9	ENSMUST00000023088.8	1913	10	8048	617	8004	-508	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATCATCAATCCTTCGG	NA	NA	NA	NA	NA	NA	NA	NA	82214979	82214349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_82214409_82214855
ENSMUST00000230271.2	chr15	+	543	5	FSM	ENSMUSG00000033020.8	ENSMUST00000230271.2	885	5	342	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	506	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCGTTACCTGCGTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	79025550	79035974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_79025635_79028793_79028864_79030252_79030384_79035535_79035608_79035788
ENSMUST00000230274.2	chr15	+	1111	4	FSM	ENSMUSG00000063236.7	ENSMUST00000230274.2	1111	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGGATGGTGTGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	76832721	76834929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76833120_76833267_76833353_76833743_76833891_76834448
ENSMUST00000230274.2-0	chr15	+	807	4	FSM	ENSMUSG00000063236.7	ENSMUST00000230274.2	1111	4	7	297	7	-297	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGATGTGTCCTGATTGCA	NA	NA	NA	NA	NA	NA	NA	NA	76832728	76834632	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76833120_76833267_76833353_76833743_76833891_76834448
ENSMUST00000230278.2	chr16	+	820	2	FSM	ENSMUSG00000116389.2	ENSMUST00000230278.2	1000	2	0	180	0	-180	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTAGTCATGTCTATTTA	NA	NA	NA	NA	NA	NA	NA	NA	3164775	3166616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_3165542_3166562
ENSMUST00000230281.2	chr16	+	1271	10	FSM	ENSMUSG00000055447.20	ENSMUST00000230281.2	1271	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	49676018	49731444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728446_49731236
ENSMUST00000230284.2	chr15	+	1108	2	FSM	ENSMUSG00000115988.2	ENSMUST00000230284.2	1108	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATATAAAAAACAAAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	42060179	42064698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_42060411_42063821
ENSMUST00000230288.2	chr15	-	1786	14	FSM	ENSMUSG00000023044.3	ENSMUST00000230288.2	1786	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAAAGAAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	102097410	102085753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_102086222_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321
ENSMUST00000230340.2	chr15	+	475	2	FSM	ENSMUSG00000116307.2	ENSMUST00000230340.2	475	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGAGGACATTCTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	78415308	78416997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_78415610_78416823
ENSMUST00000230411.2	chr15	+	1900	9	FSM	ENSMUSG00000016619.11	ENSMUST00000230411.2	1900	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTTCTCCCTTCCTAA	NA	NA	NA	NA	NA	NA	NA	NA	84807649	84824208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_84807852_84808969_84809098_84811568_84811648_84813572_84813657_84817735_84817920_84819064_84819725_84821687_84821770_84822558_84822678_84823846
ENSMUST00000230414.2	chr15	+	1202	4	FSM	ENSMUSG00000054863.10	ENSMUST00000230414.2	2649	4	0	1447	0	-1447	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTAAGAGGATGGCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	87428499	87642116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_87428805_87565680_87565831_87604702_87604831_87641497
ENSMUST00000230444.2	chr15	-	1521	11	ISM	ENSMUSG00000037570.17	ENSMUST00000163506.3	1771	14	2981	-8	2981	-1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTTTATTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	99146845	99140698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582
ENSMUST00000230494.2	chr15	-	236	2	FSM	ENSMUSG00000022450.7	ENSMUST00000230494.2	382	2	17	129	17	-129	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAAGGCCAAAGGATTTC	NA	NA	NA	NA	NA	NA	NA	NA	82238438	82234493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_82234573_82238281
ENSMUST00000230495.2	chr16	-	1147	3	NIC	ENSMUSG00000022677.16	novel	1465	5	NA	NA	3	-4	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTTGCTTATGGTCATG	NA	NA	NA	NA	NA	NA	NA	NA	14135208	14117111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_14118074_14122317_14122452_14135157
ENSMUST00000230504.2	chr15	-	252	1	FSM	ENSMUSG00000115938.2	ENSMUST00000230504.2	252	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	272	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGCCCCTGATTGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	99604694	99604442	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_99604400_99604700
ENSMUST00000230507.2	chr15	+	865	7	ISM	ENSMUSG00000022456.19	ENST00000644076.1	2332	10	5017	1004	5017	-285	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAGGAGGAACTCATGGG	NA	NA	NA	NA	NA	NA	NA	NA	82168630	82177771	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_82168711_82169987_82170106_82170637_82170734_82173395_82173496_82174604_82174657_82174938_82175033_82177446
ENSMUST00000230509.2	chr15	-	930	8	NIC	ENSMUSG00000022610.11	novel	1808	12	NA	NA	4651	-297	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGGGACTAGCCTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	89019821	89015083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_89015422_89016697_89016872_89016955_89017035_89017103_89017184_89017281_89017354_89018814_89018930_89019629_89019660_89019779
ENSMUST00000230512.2	chr15	+	1350	3	NNC	ENSMUSG00000034259.9	novel	1796	3	NA	NA	194	-256	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATTGGAGTTTCCCCCT	NA	NA	NA	NA	NA	NA	NA	NA	76211790	76214621	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_76211868_76213229_76213437_76213555
ENSMUST00000230512.2-1	chr15	+	1372	3	NNC	ENSMUSG00000034259.9	novel	1796	3	NA	NA	68	-360	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGGCTCTGGCCCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	76211664	76214517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_76211868_76213229_76213437_76213555
ENSMUST00000230632.2	chr15	+	281	1	FSM	ENSMUSG00000116182.2	ENSMUST00000230632.2	281	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGATTGGGCTACATCCA	NA	NA	NA	NA	NA	NA	NA	NA	100195051	100195332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_100195100_100195300
ENSMUST00000230636.2	chr16	+	759	1	FSM	ENSMUSG00000116423.2	ENSMUST00000230636.2	759	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGCACAGAAGACTGACAGA	NA	NA	NA	NA	NA	NA	NA	NA	15269867	15270626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_15269900_15270600
ENSMUST00000230738.2	chr16	+	546	5	ISM	ENSMUSG00000022517.18	ENST00000262370.12	2230	17	41397	445	41292	-445	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTGAGTGGCTCTAG	NA	NA	NA	NA	NA	NA	NA	NA	4745541	4754815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4754759
ENSMUST00000230768.2	chr15	-	252	1	FSM	ENSMUSG00000116234.2	ENSMUST00000230768.2	252	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAAACTTAGCCGTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	76411221	76410969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_76411000_76411200
ENSMUST00000230778.2	chr15	+	2818	9	FSM	ENSMUSG00000022307.17	ENSMUST00000230778.2	2818	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTCTAGTTTCATTTATA	NA	NA	NA	NA	NA	NA	NA	NA	41652776	41690425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_41652903_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285
ENSMUST00000230836.2	chr16	+	1150	8	FSM	ENSMUSG00000055447.20	ENSMUST00000230836.2	1150	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	49676007	49731444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_49676196_49688127_49688476_49704527_49704618_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49731231
ENSMUST00000230844.2	chr15	-	760	7	FSM	ENSMUSG00000016637.8	ENSMUST00000230844.2	760	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACGGCTTCTGTTCTTAGT	NA	NA	NA	NA	NA	NA	NA	NA	78057673	78043662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_78043909_78048389_78048500_78049346_78049465_78050173_78050234_78051269_78051330_78052112_78052193_78057587
ENSMUST00000230879.2	chr11	+	3282	1	FSM	ENSMUSG00000044068.8	ENSMUST00000049506.8	4492	1	1210	0	1210	0	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACAGGTAATAGAGTACT	NA	NA	NA	NA	NA	NA	NA	NA	22923214	22926496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_22923200_22926500
ENSMUST00000230882.2	chr15	+	3263	9	FSM	ENSMUSG00000072501.6	ENSMUST00000230882.2	3263	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATGGCTCTAATTACTTT	NA	NA	NA	NA	NA	NA	NA	NA	66449408	66483465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_66449697_66451917_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66469525_66469604_66475875_66476090_66476628_66476755_66481374
ENSMUST00000230931.2	chr16	+	481	3	FSM	ENSMUSG00000022516.11	ENSMUST00000230931.2	1618	3	367	770	6	-767	multi-exon	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCTAACTTTCTGAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	4756991	4758113	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_4757158_4757241_4757503_4758059
ENSMUST00000230938.2	chr15	-	570	5	NIC	ENSMUSG00000022559.9	novel	1710	9	NA	NA	279	-1203	combination_of_known_splicesites	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTGCAGAAAGGCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	76422656	76421123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_76421207_76421488_76421621_76421922_76421987_76422116_76422276_76422524
ENSMUST00000230979.2	chr15	+	1169	3	FSM	ENSMUSG00000068246.7	ENSMUST00000230979.2	1529	3	0	360	0	-360	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTCCGAGAGACCCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	77613238	77620221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_77613349_77618664_77618791_77619288
ENSMUST00000231014.2	chr15	-	793	8	NIC	ENSMUSG00000022610.11	novel	1808	12	NA	NA	2825	-454	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGTGCCTGGAGCTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	89021647	89015240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_89015422_89016697_89016872_89016955_89017035_89017103_89017184_89017281_89017354_89018814_89018930_89019325_89019374_89021603
ENSMUST00000231029.2	chr15	-	623	3	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	9956	6	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAGAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	102087454	102085747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_102086222_102086961_102087052_102087395
ENSMUST00000231054.2	chr15	+	2538	3	FSM	ENSMUSG00000116237.2	ENSMUST00000231054.2	2538	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAGAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	93632293	93636371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_93633860_93634491_93634540_93635447
ENSMUST00000231106.2	chr15	+	2459	1	FSM	ENSMUSG00000116508.2	ENSMUST00000231106.2	2459	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCCACCTGAGACTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	83056550	83059009	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_83056600_83059000
ENSMUST00000231141.2	chr15	+	1541	9	FSM	ENSMUSG00000046434.17	ENSMUST00000231141.2	1541	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	NA	NA	NA	NA	NA	NA	NA	103148920	103153382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152385_103152456_103152682
ENSMUST00000231152.2	chr15	-	1271	2	FSM	ENSMUSG00000053929.18	ENSMUST00000231152.2	1271	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTGTTTATTCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	76543956	76542332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_76543066_76543418
ENSMUST00000231230.2	chr16	+	1157	5	ISM	ENSMUSG00000022761.13	ENSMUST00000023444.11	3394	21	15372	0	15057	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTCTCCGAGTCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	17341923	17344197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_17342087_17342171_17342322_17343102_17343209_17343286_17343368_17343540
ENSMUST00000231280.2	chr16	+	1692	6	FSM	ENSMUSG00000039903.19	ENSMUST00000231280.2	1692	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTAAGTTCACTCCACAG	NA	NA	NA	NA	NA	NA	NA	NA	90627875	90701773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_90628321_90672926_90673080_90687417_90687562_90691465_90691544_90694251_90694342_90700991
ENSMUST00000231341.2	chr17	-	1970	5	FSM	ENSMUSG00000014769.11	ENSMUST00000231341.2	1970	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTCTTACACTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	15718601	15696220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
ENSMUST00000231351.2	chr16	-	640	5	FSM	ENSMUSG00000003955.9	ENSMUST00000231351.2	640	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTGTCTTTGTTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	35891739	35864215	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891686
ENSMUST00000231355.2	chr17	+	2194	4	FSM	ENSMUSG00000116802.2	ENSMUST00000231355.2	2194	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGTATGAATGTAATTAATG	NA	NA	NA	NA	NA	NA	NA	NA	17455133	17486325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_17455288_17482739_17482867_17483108_17483170_17484473
ENSMUST00000231380.2	chr16	-	1852	11	FSM	ENSMUSG00000022962.16	ENSMUST00000231380.2	1852	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTTGATTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	91443813	91430292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
ENSMUST00000231410.2	chr16	-	2222	4	FSM	ENSMUSG00000022951.17	ENSMUST00000231410.2	2222	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGAGACGTTGTTGGTCG	NA	NA	NA	NA	NA	NA	NA	NA	92255363	92188846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92255145
ENSMUST00000231424.2	chr16	-	895	4	NNC	ENSMUSG00000022760.18	novel	1248	5	NA	NA	256	-173	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCAGACTCTGAAGGACCA	NA	NA	NA	NA	NA	NA	NA	NA	17348655	17346114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr16_-_17346605_17346798_17346940_17348093_17348250_17348547
ENSMUST00000231468.2	chr16	+	392	3	FSM	ENSMUSG00000075229.12	ENSMUST00000231468.2	392	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	35892453	35912481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_35892508_35910270_35910331_35912203
ENSMUST00000231531.2	chr16	-	1280	8	FSM	ENSMUSG00000033809.16	ENSMUST00000231531.2	1280	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAAGTTAGTGGTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	20430485	20424207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20430323
ENSMUST00000231549.2	chr16	+	1207	2	FSM	ENSMUSG00000116957.2	ENSMUST00000231549.2	1207	2	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATAAATAAATCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	32369028	32372526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_32369240_32371530
ENSMUST00000231564.2	chr16	-	902	3	FSM	ENSMUSG00000075330.5	ENSMUST00000231564.2	902	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGAAGTTTCATGTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	19703024	19695434	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_19695861_19702442_19702568_19702673
ENSMUST00000231592.2	chr16	-	1135	2	FSM	ENSMUSG00000043391.11	ENSMUST00000231592.2	1135	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTCTCCTGTTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	21513379	21495471	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_21496193_21512965
ENSMUST00000231605.2	chr16	-	744	7	FSM	ENSMUSG00000013539.15	ENSMUST00000231605.2	744	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCACGGCCACTCTGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	18161770	18119241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130518_18161661
ENSMUST00000231609.2	chr16	+	3999	13	FSM	ENSMUSG00000022833.8	ENSMUST00000231609.2	3999	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTACTTATTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	34511101	34545572	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_34511202_34515960_34516014_34517182_34517256_34517475_34517546_34517636_34517757_34525198_34525418_34525530_34525626_34526756_34527268_34529893_34530036_34535707_34535779_34541808_34542028_34542106_34542240_34543379
ENSMUST00000231643.2	chr16	-	650	3	FSM	ENSMUSG00000038965.18	ENSMUST00000231643.2	650	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAATTTACTCAAAGTTGC	NA	NA	NA	NA	NA	NA	NA	NA	17019334	16971719	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_16972147_16977853_16978041_17019298
ENSMUST00000231650.2	chr17	-	471	2	FSM	ENSMUSG00000116614.2	ENSMUST00000231650.2	471	2	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGTGCCGGTGTAGACAAT	NA	NA	NA	NA	NA	NA	NA	NA	16541362	16540778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_16541091_16541203
ENSMUST00000231656.2	chr16	+	689	4	FSM	ENSMUSG00000021018.9	ENSMUST00000231656.2	689	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTTCTCCATTGTCATT	NA	NA	NA	NA	NA	NA	NA	NA	20536579	20541015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_20536745_20537573_20537658_20539268_20539353_20540659
ENSMUST00000231663.2	chr16	-	795	2	FSM	ENSMUSG00000116656.2	ENSMUST00000231663.2	1236	2	0	441	0	-441	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGCACAGACCAACCTAAG	NA	NA	NA	NA	NA	NA	NA	NA	90146530	90138923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_90139497_90146308
ENSMUST00000231695.2	chr17	+	798	1	FSM	ENSMUSG00000116757.2	ENSMUST00000231695.2	798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGTACACTAAATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	16777507	16778305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_16777500_16778300
ENSMUST00000231696.2	chr17	-	231	2	ISM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	20894	1044	20894	-106	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGGGCATCAGGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	15697666	15696326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_15696468_15697576
ENSMUST00000231699.2	chr16	-	796	2	ISM	ENSMUSG00000022760.18	ENSMUST00000231548.2	1110	5	1980	0	1980	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	137	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	17346931	17345941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17346605_17346798
ENSMUST00000231711.2	chr16	-	307	3	ISM	ENSMUSG00000022972.11	ENSMUST00000023694.11	1430	7	7609	613	7218	-562	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGGGAGCCTGTCATCAGC	NA	NA	NA	NA	NA	NA	NA	NA	90724393	90723309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_90723329_90723985_90724118_90724237
ENSMUST00000231714.2	chr16	-	571	1	FSM	ENSMUSG00000116529.2	ENSMUST00000231714.2	571	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGGAGGCCTCAGTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	37517702	37517131	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_37517100_37517700
ENSMUST00000231716.2	chr16	+	1387	7	FSM	ENSMUSG00000075122.6	ENSMUST00000231716.2	3173	7	0	1786	0	-1786	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCAAACACGGTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	38275922	38314911	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_38276075_38279338_38279652_38294227_38294546_38299425_38299708_38302981_38303096_38306665_38306810_38314847
ENSMUST00000231718.2	chr16	+	250	1	FSM	ENSMUSG00000116562.2	ENSMUST00000231718.2	250	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAATGAGCTAAACAAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	68685233	68685483	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_68685200_68685500
ENSMUST00000231726.2	chr16	+	1713	8	FSM	ENSMUSG00000041774.17	ENSMUST00000231726.2	1713	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGCTTACTCAGCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	16962484	16969149	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_16962803_16963071_16963246_16963825_16963944_16964830_16965011_16965096_16965257_16965461_16965562_16965660_16965839_16968664
ENSMUST00000231733.2	chr16	-	1181	7	FSM	ENSMUSG00000022751.10	ENSMUST00000231733.2	1181	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGATGTTTTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	56984157	56977028	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880
ENSMUST00000231737.2	chr16	+	969	1	FSM	ENSMUSG00000116875.2	ENSMUST00000231737.2	969	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	457	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGGGCGTGCTCGCCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	24348143	24349112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_24348100_24349100
ENSMUST00000231753.2	chr17	-	563	5	FSM	ENSMUSG00000062753.15	ENSMUST00000231753.2	563	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTTGCCCTCCTTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	27784691	27782746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783595_27783725_27784633
ENSMUST00000231756.2	chr16	-	375	1	FSM	ENSMUSG00000116648.2	ENSMUST00000231756.2	375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCTGCTCATGTCAAATA	NA	NA	NA	NA	NA	NA	NA	NA	16637987	16637612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_16637600_16638000
ENSMUST00000231762.2	chr16	+	593	3	FSM	ENSMUSG00000051483.10	ENSMUST00000231762.2	593	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTTGTGGAAGATACAAAG	NA	NA	NA	NA	NA	NA	NA	NA	93404776	93406805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_93405143_93405676_93405785_93406686
ENSMUST00000231787.2	chr16	-	880	1	FSM	ENSMUSG00000116825.2	ENSMUST00000231787.2	880	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGGTTTTTATACAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	18500966	18500086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_18500100_18501000
ENSMUST00000231802.2	chr16	+	363	3	ISM	ENSMUSG00000022849.6	ENSMUST00000231579.2	1703	8	32	23968	32	-23968	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAGTTTTTGACCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	35590776	35621950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_35590910_35607559_35607746_35621906
ENSMUST00000231849.2	chr16	-	665	2	NNC	ENSMUSG00000097318.3	novel	737	2	NA	NA	52	1	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGAATTCTCTCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	33201045	33200223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr16_-_33200729_33200885
ENSMUST00000231866.2	chr17	+	584	5	FSM	ENSMUSG00000046711.17	ENSMUST00000231866.2	584	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGGATTCGGCTCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	27775605	27781613	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780438_27780486_27781411
ENSMUST00000231885.2	chr16	-	625	1	FSM	ENSMUSG00000116547.2	ENSMUST00000231885.2	625	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGCACTGTTGGAGAGTT	NA	NA	NA	NA	NA	NA	NA	NA	88479616	88478991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_88479000_88479600
ENSMUST00000231936.2	chr16	+	672	5	FSM	ENSMUSG00000080717.11	ENSMUST00000231936.2	672	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGAGAAAAGAAAGGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	97798514	97833001	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97832693
ENSMUST00000231959.2	chr16	+	1324	3	FSM	ENSMUSG00000116737.2	ENSMUST00000231959.2	1324	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTCTTTGTTGTTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	30689008	30700467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_30689859_30696688_30696786_30700090
ENSMUST00000231980.2	chr17	+	490	1	FSM	ENSMUSG00000116620.2	ENSMUST00000231980.2	490	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTCTTTTGACTTGCGG	NA	NA	NA	NA	NA	NA	NA	NA	4930900	4931390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_4930900_4931400
ENSMUST00000231993.2	chr16	-	615	1	FSM	ENSMUSG00000116835.2	ENSMUST00000231993.2	615	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACGTGATATTTGTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	33827827	33827212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_33827200_33827800
ENSMUST00000232075.2	chr16	-	2645	8	FSM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTTTACTGTGCCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	22676417	22631969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676244
ENSMUST00000232127.2	chr16	+	709	7	NNC	ENSMUSG00000003234.17	novel	3090	21	NA	NA	686	-9690	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGCCTACCAGGTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	20368012	20370439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr16_+_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370228_20370305_20370393
ENSMUST00000232197.2	chr16	-	1506	4	FSM	ENSMUSG00000022951.17	ENSMUST00000232197.2	1506	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCATATCTTAGTACCT	NA	NA	NA	NA	NA	NA	NA	NA	92267755	92189397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92267702
ENSMUST00000232223.2	chr17	+	1524	8	FSM	ENSMUSG00000073471.4	ENSMUST00000232223.2	2225	8	381	320	342	-320	multi-exon	TRUE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTTTTCATTTATTTAAC	NA	NA	NA	NA	NA	NA	NA	NA	8164826	8198336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_8165136_8171380_8171466_8188978_8189121_8191655_8191802_8192768_8192973_8194876_8195040_8197549_8197637_8197948
ENSMUST00000232239.2	chr16	-	2319	4	FSM	ENSMUSG00000022951.17	ENSMUST00000232239.2	2319	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACGTTGTTGGTCGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	92263031	92188842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92262720
ENSMUST00000232262.2	chr16	+	2130	11	FSM	ENSMUSG00000022817.16	ENSMUST00000232262.2	2130	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGATTACTGGTTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	33712310	33769523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_33712420_33719610_33719773_33720879_33720976_33723163_33723254_33730834_33730970_33740154_33740585_33760859_33761083_33764473_33764575_33766860_33766981_33768084_33768252_33769026
ENSMUST00000232276.2	chr17	-	860	5	FSM	ENSMUSG00000062753.15	ENSMUST00000232276.2	860	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCCTCCTTGGGTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	27784640	27782742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783535_27783725_27784349
ENSMUST00000232321.2	chr16	-	818	6	FSM	ENSMUSG00000023791.19	ENSMUST00000232321.2	818	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTAGTTTGTCTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	31918558	31903233	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918472
ENSMUST00000232335.2	chr16	-	1352	7	FSM	ENSMUSG00000009097.11	ENSMUST00000232335.2	2511	7	127	1032	127	-307	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTACTGCCCCAGATAGTG	NA	NA	NA	NA	NA	NA	NA	NA	18405592	18400760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_18401207_18401473_18401575_18401656_18401725_18402168_18402325_18402833_18403006_18403784_18403887_18405285
ENSMUST00000232344.2	chr16	+	1580	3	FSM	ENSMUSG00000041774.17	ENSMUST00000232344.2	1580	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGGTTTATAAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	16964839	16966710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_16965011_16965096_16965257_16965461
ENSMUST00000232413.2	chr16	-	529	2	FSM	ENSMUSG00000022748.9	ENSMUST00000232413.2	529	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATTTATGTTTTGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	57427227	57381795	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_57382126_57427028
ENSMUST00000232457.2	chr16	-	387	2	ISM	ENSMUSG00000022951.17	ENST00000481448.5	2579	5	12	6714	12	-6164	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGAGACCTGCAGGCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	92196866	92195561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_92195866_92196783
ENSMUST00000232466.2	chr16	-	433	1	FSM	ENSMUSG00000116861.2	ENSMUST00000232466.2	433	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGACATCTCATGCACGGC	NA	NA	NA	NA	NA	NA	NA	NA	28770107	28769674	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_28769700_28770100
ENSMUST00000232499.2	chr17	-	640	6	FSM	ENSMUSG00000092074.3	ENSMUST00000232499.2	640	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTGTATTTTATGTAGC	NA	NA	NA	NA	NA	NA	NA	NA	6367693	6356621	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_6356874_6358912_6359012_6361567_6361646_6361983_6362108_6365191_6365234_6367648
ENSMUST00000232523.2	chr16	+	1972	11	ISM	ENSMUSG00000022779.17	ENSMUST00000023465.16	3073	18	13431	0	13431	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	NA	NA	NA	NA	NA	NA	NA	16702075	16710854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ENSMUST00000232621.2	chr16	+	249	1	FSM	ENSMUSG00000116845.2	ENSMUST00000232621.2	249	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGCAGAAGAAATCGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	88256832	88257081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_88256800_88257100
ENSMUST00000232627.2	chr17	+	353	2	ISM	ENSMUSG00000073471.4	ENSMUST00000097423.3	2189	8	408	27166	408	-27166	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTTTAATCCTGTTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	8164892	8171490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_8165136_8171380
ENSMUST00000232635.2	chr16	-	1184	4	NIC	ENSMUSG00000022856.10	novel	1360	5	NA	NA	21	-1	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTGCAGGTTCTGAATG	NA	NA	NA	NA	NA	NA	NA	NA	21766281	21753076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_21753796_21755730_21755870_21756682_21756845_21766117
ENSMUST00000232643.2	chr16	-	582	3	NNC	ENSMUSG00000022962.16	novel	3276	22	NA	NA	23908	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAACTTATCTAGCA	NA	NA	NA	NA	NA	NA	NA	NA	91419905	91418291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr16_-_91418633_91418734_91418851_91419780
ENSMUST00000232683.2	chr16	+	609	2	FSM	ENSMUSG00000117327.2	ENSMUST00000232683.2	609	2	0	0	0	0	multi-exon	TRUE	non_canonical	NA	NA	NA	NA	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGCTCTGGTCCCATCT	NA	NA	NA	NA	NA	NA	NA	NA	21715255	21715866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_21715682_21715683
ENSMUST00000232687.2	chr17	-	694	4	FSM	ENSMUSG00000024067.15	ENSMUST00000232687.2	694	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTATAGTTGTTGTATA	NA	NA	NA	NA	NA	NA	NA	NA	74623198	74606476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038
ENSMUST00000232712.2	chr17	+	211	1	FSM	ENSMUSG00000117209.2	ENSMUST00000232712.2	211	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGAGGCCCCTCCAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	21833486	21833697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_21833500_21833700
ENSMUST00000232766.2	chr17	-	883	4	FSM	ENSMUSG00000024048.16	ENSMUST00000232766.2	883	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTAGCGTTATTTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	71305049	71301281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71305025
ENSMUST00000232791.2	chr17	-	177	1	FSM	ENSMUSG00000117165.2	ENSMUST00000232791.2	177	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATTACATACAGCCAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	39948035	39947858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_39947900_39948000
ENSMUST00000232832.2	chr16	+	718	5	FSM	ENSMUSG00000023147.18	ENSMUST00000232832.2	2678	5	65	1895	58	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCAGCTACAAGTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	95946675	95957157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_95946966_95953012_95953179_95954170_95954239_95955280_95955396_95957078
ENSMUST00000232836.2	chr17	-	2778	13	FSM	ENSMUSG00000024006.18	ENSMUST00000232836.2	2778	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCACAGCCTCCTTGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	29219665	29190691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982
ENSMUST00000232848.2	chr17	-	793	5	NIC	ENSMUSG00000024096.18	novel	3811	10	NA	NA	8785	-410	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCAGGGCCTGGGAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	66166040	66156824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66165967
ENSMUST00000232913.2	chr17	+	1963	1	FSM	ENSMUSG00000117241.2	ENSMUST00000232913.2	1963	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGGCAATCTGCCTTGCG	NA	NA	NA	NA	NA	NA	NA	NA	53666954	53668917	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_53667000_53668900
ENSMUST00000233026.2	chr17	-	355	1	FSM	ENSMUSG00000117187.2	ENSMUST00000233026.2	355	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGGCCTAGGCCTACCCC	NA	NA	NA	NA	NA	NA	NA	NA	74745634	74745279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_74745300_74745600
ENSMUST00000233088.2	chr17	+	2597	6	FSM	ENSMUSG00000063952.17	ENSMUST00000233088.2	2597	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTGTGCGGTGCTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	29042647	29057515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_29042768_29042946_29043041_29047317_29047416_29050287_29050386_29054735_29054891_29055483
ENSMUST00000233089.2	chr17	-	947	4	FSM	ENSMUSG00000024048.16	ENSMUST00000233089.2	947	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTAGCGTTATTTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	71304302	71301281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71304214
ENSMUST00000233103.2	chr17	-	497	4	NNC	ENSMUSG00000049760.7	novel	755	4	NA	NA	573	-168	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	202	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCCGGTTTTCTGGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	56916198	56914619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_-_56914842_56915637_56915693_56915845_56916024_56916156
ENSMUST00000233136.2	chr17	-	1289	7	FSM	ENSMUSG00000023971.10	ENSMUST00000233136.2	1289	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	46985278	46978386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
ENSMUST00000233174.2	chr17	-	1263	8	FSM	ENSMUSG00000023980.8	ENSMUST00000233174.2	1263	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTTATTTATTATTATA	NA	NA	NA	NA	NA	NA	NA	NA	47813212	47794288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_47794760_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ENSMUST00000233185.2	chr17	+	1247	3	FSM	ENSMUSG00000117007.2	ENSMUST00000233185.2	1247	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCAGACTGGTAAGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	29272309	29278729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_29272589_29275356_29275414_29277818
ENSMUST00000233210.2	chr17	+	593	3	FSM	ENSMUSG00000039770.7	ENSMUST00000233210.2	2419	3	223	1603	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTCCTTCACTGAAAACAAA	NA	NA	NA	NA	NA	NA	NA	NA	73144530	73155829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_73144704_73153273_73153439_73155574
ENSMUST00000233245.2	chr17	-	3883	8	FSM	ENSMUSG00000024053.12	ENSMUST00000233245.2	3883	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTCCTTTTCTGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	71618551	71559168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_71560089_71562113_71562243_71562974_71563008_71563318_71563688_71580368_71582283_71587668_71587845_71617143_71617267_71618332
ENSMUST00000233269.2	chr16	-	2232	11	FSM	ENSMUSG00000040732.21	ENSMUST00000233269.2	2232	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCAAACTGTGAAGATGAC	NA	NA	NA	NA	NA	NA	NA	NA	95387452	95161068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_95162186_95169510_95169559_95170180_95170238_95170853_95170923_95179970_95180052_95180926_95181131_95190752_95190905_95210593_95210812_95325385_95325474_95331122_95331225_95387356
ENSMUST00000233281.2	chr17	+	1328	5	FSM	ENSMUSG00000051341.7	ENSMUST00000233281.2	3164	5	0	1836	0	-1301	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTCCTGAGATACATTAT	NA	NA	NA	NA	NA	NA	NA	NA	21755800	21781027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_21756096_21758834_21758933_21775246_21775338_21777396_21777524_21780310
ENSMUST00000233296.2	chr17	+	2080	3	FSM	ENSMUSG00000023067.15	ENSMUST00000233296.2	2080	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTTGTCATTAGAGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	29312754	29319701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_29313016_29317376_29317812_29318317
ENSMUST00000233311.2	chr17	+	687	2	ISM	ENSMUSG00000024101.16	ENST00000538033.2	1641	7	617	1964	617	-1964	internal_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTAAGCCAGGTTCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	66423268	66424166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_66423757_66423967
ENSMUST00000233321.2	chr9	+	1361	3	FSM	ENSMUSG00000074415.15	ENSMUST00000233321.2	2097	3	155	581	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTGCATATTAAATCTC	NA	NA	NA	NA	NA	NA	NA	NA	41386279	41502607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_41386450_41439418_41439497_41501494
ENSMUST00000233344.2	chr17	+	1806	13	FSM	ENSMUSG00000023886.11	ENSMUST00000233344.2	2817	13	22	989	0	-989	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCTGTGGAGGGCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	14499820	14624046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_14500062_14545796_14545969_14556808_14556916_14557923_14558024_14564588_14564637_14567435_14567520_14568965_14569041_14589169_14589357_14595698_14595782_14617782_14617886_14619632_14619908_14621803_14621845_14623756
ENSMUST00000233349.2	chr17	-	458	4	NIC	ENSMUSG00000063888.8	novel	1310	6	NA	NA	-16	-897	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGGTGAGTGCTGTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	47093598	47089340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_47089446_47090210_47090349_47091316_47091478_47093544
ENSMUST00000233417.2	chr17	-	636	4	FSM	ENSMUSG00000117098.2	ENSMUST00000233417.2	636	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGCGGCGGCTGACACG	NA	NA	NA	NA	NA	NA	NA	NA	71309203	71281317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_71281492_71303104_71303267_71303691_71303891_71309102
ENSMUST00000233427.2	chr17	+	729	6	FSM	ENSMUSG00000037805.16	ENSMUST00000233427.2	729	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	NA	NA	NA	NA	NA	NA	NA	28547541	28550006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_28547593_28547787_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
ENSMUST00000233430.2	chr17	+	692	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233430.2	945	4	17	236	0	-10	multi-exon	FALSE	canonical	NA	NA	NA	NA	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACCAGAGAGCGAGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	46991928	46993792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_46992089_46992542_46992824_46992934_46993038_46993644
ENSMUST00000233454.2	chr17	-	1560	3	FSM	ENSMUSG00000079414.4	ENSMUST00000233454.2	1560	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAATAAAATTATAT	NA	NA	NA	NA	NA	NA	NA	NA	57412922	57398369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_57399770_57410349_57410485_57412897
ENSMUST00000233476.2	chr17	-	3157	16	FSM	ENSMUSG00000061665.8	ENSMUST00000233476.2	3157	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATAGAGCTGAAGTAGA	NA	NA	NA	NA	NA	NA	NA	NA	43187315	43105768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_43107261_43109485_43109550_43116050_43116227_43118804_43118907_43119621_43119735_43126835_43126979_43127317_43127484_43131485_43131549_43133239_43133277_43135364_43135470_43136727_43136823_43137171_43137251_43140808_43140997_43145055_43145177_43149592_43149694_43187203
ENSMUST00000233491.2	chr17	+	673	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233491.2	673	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGCTGCCTTACCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	46991928	46993802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_46992060_46992542_46992824_46992934_46993038_46993644
ENSMUST00000233519.2	chr17	-	414	4	NNC	ENSMUSG00000055839.7	novel	537	4	NA	NA	22	7	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	1116	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATTGACTTTTCTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	24048088	24043782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_-_24043954_24046441_24046548_24047817_24047923_24048056
ENSMUST00000233563.2	chr9	+	514	4	FSM	ENSMUSG00000074415.15	ENSMUST00000233563.2	514	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGTGACATGTTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	41386355	41501463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_41386450_41389629_41389778_41439418_41439497_41501269
ENSMUST00000233566.2	chr16	+	822	4	FSM	ENSMUSG00000023147.18	ENSMUST00000233566.2	2415	4	5	1588	0	301	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCGTTAGTGCTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	95946617	95957458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_95946779_95953012_95953179_95955280_95955396_95957078
ENSMUST00000233580.2	chr17	-	1850	6	FSM	ENSMUSG00000024098.7	ENSMUST00000233580.2	1850	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAACATGTGAGTGTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	66258110	66228966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_66230034_66233251_66233462_66236541_66236809_66244795_66244896_66255652_66255810_66258061
ENSMUST00000233589.2	chr17	+	651	5	ISM	ENSMUSG00000024101.16	ENSMUST00000116556.4	1831	11	4399	2062	387	-1750	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTGCTGGCCAGGTTGC	NA	NA	NA	NA	NA	NA	NA	NA	66423038	66424380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258
ENSMUST00000233611.2	chr17	+	3180	16	FSM	ENSMUSG00000024068.9	ENSMUST00000233611.2	1746	16	99	-1533	-33	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTAGGATCATATGCTG	NA	NA	NA	NA	NA	NA	NA	NA	74646130	74696840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_74646441_74658947_74659032_74663080_74663165_74674242_74674431_74675822_74675957_74676186_74676281_74678424_74678500_74679253_74679326_74680278_74680355_74680657_74680750_74681117_74681198_74682077_74682121_74684035_74684116_74688964_74689036_74694028_74694070_74695184
ENSMUST00000233628.2	chr17	+	346	1	FSM	ENSMUSG00000117256.2	ENSMUST00000233628.2	346	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTGACTTGTGGGCG	NA	NA	NA	NA	NA	NA	NA	NA	63877897	63878243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_63877900_63878200
ENSMUST00000233644.2	chr17	+	533	2	ISM	ENSMUSG00000002768.9	ENST00000642748.1	1035	4	-76	1296	-76	-1023	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAAGGAGAAGATGGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	46991620	46992779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_46991917_46992542
ENSMUST00000233728.2	chr17	-	405	3	ISM	ENSMUSG00000024053.12	ENST00000254528.4	3191	8	523	23008	523	-23008	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGAACTTCAGCAATCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	71617276	71582186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_71582283_71587668_71587845_71617143
ENSMUST00000233798.2	chr17	-	906	4	FSM	ENSMUSG00000024048.16	ENSMUST00000233798.2	906	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTAGCGTTATTTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	71305558	71301281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71305511
ENSMUST00000233832.2	chr17	+	493	4	FSM	ENSMUSG00000002379.8	ENSMUST00000233832.2	493	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTTAAAGGCAGGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	57024782	57029141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_57024943_57028034_57028128_57028358_57028442_57028984
ENSMUST00000233833.2	chr9	+	1721	4	FSM	ENSMUSG00000074415.15	ENSMUST00000233833.2	1721	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGATTTGTCAGTTCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	41386163	41453473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_41386450_41399489_41399565_41439418_41439497_41452191
ENSMUST00000233931.2	chr16	-	1826	12	FSM	ENSMUSG00000022948.17	ENSMUST00000233931.2	1826	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	NA	NA	NA	NA	NA	NA	NA	93400703	93380347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024_93400100_93400453
ENSMUST00000233974.2	chr17	-	2313	16	FSM	ENSMUSG00000003546.11	ENSMUST00000233974.2	2313	16	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCGGAGTCTTCATTG	NA	NA	NA	NA	NA	NA	NA	NA	46956948	46941549	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956900
ENSMUST00000233988.2	chr17	-	3038	15	FSM	ENSMUSG00000059409.10	ENSMUST00000233988.2	3038	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGAGTCGCCTTGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	47016037	46993916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_46995053_46995186_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011076_47015758
ENSMUST00000234028.2	chr17	+	2809	9	NNC	ENSMUSG00000052712.18	novel	2812	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCTACCTTCTTACTGG	NA	NA	NA	NA	NA	NA	NA	NA	29487761	29521864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515536_29515664_29517615_29517740_29520329
ENSMUST00000234070.2	chr17	+	793	5	ISM	ENSMUSG00000041354.17	ENSMUST00000047503.16	3252	18	700	4915	700	-4915	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACACTCTCTGCCCCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	34149255	34151746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34149416_34150699_34150784_34151013_34151193_34151294_34151346_34151427
ENSMUST00000234075.2	chr18	+	592	1	FSM	ENSMUSG00000117405.2	ENSMUST00000234075.2	592	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	450	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTCCCTCGTGTCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	24078015	24078607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_24078000_24078600
ENSMUST00000234076.2	chr17	+	1789	6	FSM	ENSMUSG00000117571.2	ENSMUST00000234076.2	1789	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACATGGTTTCTTTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	84386087	84397303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_84386483_84388081_84388180_84392471_84392562_84393332_84394246_84395580_84395720_84397149
ENSMUST00000234102.2	chr18	-	2505	9	FSM	ENSMUSG00000024286.9	ENSMUST00000234102.2	2505	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATTCAACTTGCATTC	NA	NA	NA	NA	NA	NA	NA	NA	9449970	9315300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_9316673_9319408_9319572_9332783_9332951_9345193_9345314_9345413_9345472_9349387_9349424_9353406_9353508_9377793_9377829_9449517
ENSMUST00000234117.2	chr18	+	919	1	FSM	ENSMUSG00000117484.2	ENSMUST00000234117.2	919	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCCTTCTCAGCTTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	8415128	8416047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_8415100_8416000
ENSMUST00000234158.2	chr18	+	1731	15	ISM	ENSMUSG00000038299.17	ENSMUST00000166214.9	2906	24	11	13491	11	-13491	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACATAGAGACTAGGAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	32970374	32985962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916
ENSMUST00000234207.2	chr18	+	439	4	FSM	ENSMUSG00000002477.6	ENSMUST00000234207.2	439	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAAGTGTAGGGACAGA	NA	NA	NA	NA	NA	NA	NA	NA	10617795	10627955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_10617927_10623630_10623708_10626948_10627018_10627793
ENSMUST00000234235.2	chr17	-	682	3	FSM	ENSMUSG00000040888.11	ENSMUST00000234235.2	682	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTGATTTCTGGATGTA	NA	NA	NA	NA	NA	NA	NA	NA	24915064	24913158	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_24913417_24914227_24914392_24914804
ENSMUST00000234237.2	chr18	-	691	3	ISM	ENSMUSG00000024420.10	ENST00000584787.5	4324	7	-4	158061	3	-157900	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCACACCTCCAACAAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	14105705	13979828	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_13980192_14072018_14072199_14105557
ENSMUST00000234258.2	chr17	-	592	3	NNC	ENSMUSG00000024248.15	novel	1076	3	NA	NA	-3000	-396	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	242	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCATTCGTGGCCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	83824759	83809758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_-_83810167_83811528_83811658_83824704
ENSMUST00000234261.2	chr17	-	1221	6	NNC	ENSMUSG00000039183.7	novel	1427	7	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAAGGTGTCTGTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	25105289	25101585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104692_25104838_25105252
ENSMUST00000234262.2	chr17	-	2774	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234262.2	2774	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGGATGTCTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	26463142	26431664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444901_26444998_26462979
ENSMUST00000234265.2	chr17	-	217	1	FSM	ENSMUSG00000117522.2	ENSMUST00000234265.2	217	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCTGTGGTATCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	88276648	88276431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_88276400_88276600
ENSMUST00000234293.2	chr17	-	1191	6	NNC	ENSMUSG00000039183.7	novel	1427	7	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTGGTCAAGGTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	25105303	25101591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104692_25104812_25105264
ENSMUST00000234295.2	chr17	+	797	4	FSM	ENSMUSG00000095193.3	ENSMUST00000234295.2	3079	4	0	2282	0	-2282	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCATTTTGGAGAGAAACC	NA	NA	NA	NA	NA	NA	NA	NA	95172345	95183467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_95172441_95181413_95181541_95181729_95181791_95182953
ENSMUST00000234304.2	chr17	+	1137	7	FSM	ENSMUSG00000024132.7	ENSMUST00000234304.2	1137	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTAGCTCTTGTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	24645614	24658294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_24645717_24645826_24645914_24652106_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
ENSMUST00000234316.2	chr18	+	917	6	FSM	ENSMUSG00000033107.7	ENSMUST00000234316.2	1406	6	0	489	0	-489	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGACTGGAGGGGGATT	NA	NA	NA	NA	NA	NA	NA	NA	21094528	21116292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_21094858_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
ENSMUST00000234344.2	chr18	+	2416	6	FSM	ENSMUSG00000024400.17	ENSMUST00000234344.2	2416	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCACTGTTAGAATCT	NA	NA	NA	NA	NA	NA	NA	NA	31937228	31968475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635
ENSMUST00000234406.2	chr17	-	842	5	FSM	ENSMUSG00000036438.15	ENSMUST00000234406.2	842	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCGTGGACTGTGGACAGT	NA	NA	NA	NA	NA	NA	NA	NA	87754284	87741092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87754220
ENSMUST00000234424.2	chr17	+	745	7	ISM	ENSMUSG00000041057.11	ENSMUST00000047086.10	3450	18	32547	1239	32547	-1239	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTCCCACACTTCCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	71955756	71964787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
ENSMUST00000234507.2	chr17	-	1653	12	FSM	ENSMUSG00000024012.19	ENSMUST00000234507.2	1653	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGCAAGCCTCTTAT	NA	NA	NA	NA	NA	NA	NA	NA	29566267	29551049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555140_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566094
ENSMUST00000234521.2	chr17	+	495	3	ISM	ENSMUSG00000024073.17	ENSMUST00000183224.8	14562	73	107170	62412	107170	-62412	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGCTCGGGCTTGCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	74942716	74946966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_74942892_74945337_74945466_74946774
ENSMUST00000234536.2	chr18	+	2271	7	FSM	ENSMUSG00000024317.16	ENSMUST00000234536.2	2271	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTGTAAAAAACCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	21134964	21160592	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
ENSMUST00000234554.2	chr17	-	2828	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234554.2	2828	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGGATGTCTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	26463196	26431664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444901_26444998_26462979
ENSMUST00000234568.2	chr17	+	2651	20	FSM	ENSMUSG00000024078.8	ENSMUST00000234568.2	2651	20	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTTATTTTGTGATGTT	NA	NA	NA	NA	NA	NA	NA	NA	75024906	75170561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_75025007_75025628_75025807_75028515_75028646_75031612_75031754_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75106178_75106407_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170331
ENSMUST00000234597.2	chr17	-	1434	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234597.2	1434	6	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAAGGTGTCTGTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	25104888	25101585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692
ENSMUST00000234597.2-0	chr17	-	1077	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234597.2	1434	6	96	261	11	176	multi-exon	FALSE	canonical	NA	NA	NA	NA	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGCCACACCACACAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	25104792	25101846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692
ENSMUST00000234625.2	chr10	+	2620	11	FSM	ENSMUSG00000020175.16	ENSMUST00000234625.2	2620	11	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAAAATGAAA	NA	NA	NA	NA	NA	NA	NA	NA	74872920	74889932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_74873154_74874271_74874353_74877671_74877764_74880302_74880369_74881863_74881966_74884280_74884346_74885727_74885784_74886473_74886552_74886821_74886913_74887749_74887876_74888302
ENSMUST00000234652.2	chr18	+	263	3	ISM	ENSMUSG00000024404.8	ENST00000577501.5	1869	13	8130	16171	8130	-16171	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGGAATGGATTTGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	12269968	12272402	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_12270093_12270296_12270407_12272373
ENSMUST00000234687.2	chr17	-	2833	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234687.2	2833	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAGCGTGAGCCTGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	26463188	26431683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26444998_26462963
ENSMUST00000234696.2	chr17	-	987	7	FSM	ENSMUSG00000024097.12	ENSMUST00000234696.2	987	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	NA	NA	NA	NA	NA	NA	NA	80514732	80508738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_80509032_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUST00000234783.2	chr18	-	493	1	FSM	ENSMUSG00000117385.2	ENSMUST00000234783.2	493	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAAGACCAGTTTGCAAAA	NA	NA	NA	NA	NA	NA	NA	NA	8228006	8227513	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_8227500_8228000
ENSMUST00000234810.2	chr18	+	2009	7	FSM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	75	4431	0	758	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTTCATATGGAAACCT	NA	NA	NA	NA	NA	NA	NA	NA	6765219	6789998	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_6765333_6770053_6770110_6778494_6778557_6783119_6783193_6784569_6784689_6784938_6785006_6788479
ENSMUST00000234832.2	chr17	+	777	5	ISM	ENSMUSG00000034681.18	ENST00000568631.5	1393	8	4911	77	4911	-77	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGATAAGCAGGGACATTGA	NA	NA	NA	NA	NA	NA	NA	NA	24639086	24644152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUST00000234859.2	chr17	-	1706	2	FSM	ENSMUSG00000040888.11	ENSMUST00000234859.2	1706	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCTGGTTTCTGTGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	24914680	24912163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_24913417_24914227
ENSMUST00000234864.2	chr18	-	749	4	ISM	ENSMUSG00000036225.16	ENST00000408011.7	2108	5	339	5304	339	-4655	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGCTGGAATCACGACTC	NA	NA	NA	NA	NA	NA	NA	NA	15197155	15107111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_15107343_15119392_15119538_15140752_15140932_15196961
ENSMUST00000234928.2	chr17	-	1471	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234928.2	1471	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAAGGTGTCTGTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	25104925	25101585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692
ENSMUST00000234959.2	chr17	+	313	1	FSM	ENSMUSG00000117476.2	ENSMUST00000234959.2	313	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	382	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGAACCCTCCCCCAATA	NA	NA	NA	NA	NA	NA	NA	NA	94915612	94915925	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_94915600_94915900
ENSMUST00000235011.2	chr18	-	2086	4	NIC	ENSMUSG00000037013.18	novel	2911	10	NA	NA	31643	2	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	14784180	14758685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_14760369_14766599_14766734_14774012_14774181_14784079
ENSMUST00000235050.2	chr17	+	773	6	FSM	ENSMUSG00000052712.18	ENSMUST00000235050.2	773	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGGTTGCTTAGTTAC	NA	NA	NA	NA	NA	NA	NA	NA	29487926	29520503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_29487977_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUST00000235069.2	chr17	-	1040	8	FSM	ENSMUSG00000024097.12	ENSMUST00000235069.2	1040	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAGATGTTTTGATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	80514732	80508745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUST00000235084.2	chr18	+	1365	8	ISM	ENSMUSG00000024404.8	ENST00000581585.5	1874	13	10392	28	10365	-11	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATAATATAATTCTTTAAC	NA	NA	NA	NA	NA	NA	NA	NA	12272203	12288562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
ENSMUST00000235088.2	chr17	-	1660	12	FSM	ENSMUSG00000024012.19	ENSMUST00000235088.2	1660	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGCAAGCCTCTTAT	NA	NA	NA	NA	NA	NA	NA	NA	29566325	29551049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555191_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566094
ENSMUST00000235170.2	chr18	+	221	2	ISM	ENSMUSG00000091896.9	ENSMUST00000167406.2	2393	8	29705	1486	29705	-1486	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCACATGTTTACCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	35934359	35938730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_35934421_35938570
ENSMUST00000235171.2	chr17	-	898	6	FSM	ENSMUSG00000024026.14	ENSMUST00000235171.2	898	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACAGCTCCCTTTAGAG	NA	NA	NA	NA	NA	NA	NA	NA	30831576	30812839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816867_30819012_30819154_30822993_30823077_30831441
ENSMUST00000235195.2	chr19	+	552	3	ISM	ENSMUSG00000056612.8	ENSMUST00000070850.8	999	4	1481	3	1208	-3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACAGGCTTGGCTGGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	6953816	6954689	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_6953996_6954225_6954259_6954349
ENSMUST00000235204.2	chr18	+	776	2	FSM	ENSMUSG00000024589.19	ENST00000617539.1	662	2	-25	-89	0	89	multi-exon	FALSE	canonical	NA	NA	NA	NA	858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTGCTAAATCACTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	65020902	65021952	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_65021167_65021440
ENSMUST00000235204.2-0	chr18	+	672	2	FSM	ENSMUSG00000024589.19	ENST00000617539.1	662	2	-9	-1	-9	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCCAAACGGTTGGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	65020918	65021864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_65021167_65021440
ENSMUST00000235257.2	chr19	+	1340	2	FSM	ENSMUSG00000118273.2	ENSMUST00000235257.2	1340	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAAATCCATGAGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	21969936	21998380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_21970174_21997277
ENSMUST00000235263.2	chr19	-	1400	7	FSM	ENSMUSG00000025092.8	ENSMUST00000235263.2	1400	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTCTGTCAGGTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	58849399	58808150	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_58808810_58809431_58809549_58810495_58810601_58813682_58813870_58815987_58816113_58816684_58816771_58849278
ENSMUST00000235271.2	chr19	+	1488	8	FSM	ENSMUSG00000034445.9	ENSMUST00000235271.2	2661	8	40	1133	0	148	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGCCACTAGCTGTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	10554854	10566060	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_10555258_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
ENSMUST00000235280.2	chr19	-	1622	14	FSM	ENSMUSG00000024659.16	ENSMUST00000235280.2	1622	14	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGTCATTGTCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	20368037	20350791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_20351135_20352588_20352712_20354015_20354075_20354970_20355067_20355759_20355854_20357012_20357070_20357703_20357784_20359413_20359505_20360225_20360340_20361120_20361216_20361838_20361948_20362056_20362137_20365838_20366058_20367975
ENSMUST00000235289.2	chr19	+	1563	3	FSM	ENSMUSG00000087132.9	ENSMUST00000235289.2	1563	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATAAGTGTTTGCCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	4489350	4499001	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_4489418_4493769_4493817_4497552
ENSMUST00000235295.2	chr19	+	1643	3	FSM	ENSMUSG00000035372.3	ENSMUST00000235295.2	1643	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGCTTGTGTGGGTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	3758346	3767878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_3758437_3765637_3765803_3766490
ENSMUST00000235301.2	chr19	-	388	5	NNC	ENSMUSG00000059734.8	novel	780	7	NA	NA	6	-2058	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCTGTGAGGCCATCTG	NA	NA	NA	NA	NA	NA	NA	NA	3962768	3960927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_3961071_3961160_3961257_3961565_3961598_3961688_3961747_3962709
ENSMUST00000235306.2	chr19	+	645	3	FSM	ENSMUSG00000024854.5	ENSMUST00000235306.2	645	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTCTGACCTTACATCTC	NA	NA	NA	NA	NA	NA	NA	NA	4282491	4283685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_4282607_4282801_4282914_4283267
ENSMUST00000235307.2	chr18	+	1747	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	48179713	48181460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_48179700_48181500
ENSMUST00000235313.2	chr17	-	638	3	NNC	ENSMUSG00000024335.21	novel	3170	11	NA	NA	3247	-1684	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAGTTCCTCTGAGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	34334216	34333020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_-_34333152_34333323_34333478_34333863
ENSMUST00000235511.2	chr19	+	2276	1	FSM	ENSMUSG00000118106.2	ENSMUST00000235511.2	2276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTTATTAGATATTTT	NA	NA	NA	NA	NA	NA	NA	NA	32463322	32465598	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_32463300_32465600
ENSMUST00000235552.2	chr18	-	709	3	ISM	ENSMUSG00000117679.2	ENSMUST00000001415.9	2067	13	4007	84	4007	-84	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGTCCAGCCCTGGACA	NA	NA	NA	NA	NA	NA	NA	NA	36808412	36804290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_36804729_36808002_36808195_36808333
ENSMUST00000235587.2	chr17	-	1680	9	FSM	ENSMUSG00000062202.15	ENSMUST00000235587.2	1680	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAAAAAAAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	30795236	30439073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_30439545_30447773_30447853_30493827_30493936_30518504_30518695_30553196_30553307_30732529_30732650_30736077_30736298_30743686_30743952_30795119
ENSMUST00000235603.2	chr18	+	785	6	FSM	ENSMUSG00000024608.12	ENSMUST00000235603.2	785	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1091	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTTTGGTTCTGGTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	60880742	60911615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_60880848_60907581_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502
ENSMUST00000235606.2	chr18	-	868	7	FSM	ENSMUSG00000056671.8	ENSMUST00000235606.2	868	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTTTCTCCAAATGT	NA	NA	NA	NA	NA	NA	NA	NA	42084307	42008664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_42008919_42014277_42014351_42045434_42045541_42065665_42065827_42068232_42068307_42070698_42070757_42084165
ENSMUST00000235619.2	chr18	-	1524	9	FSM	ENSMUSG00000024357.11	ENSMUST00000235619.2	1524	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTCTCTTGTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	35631947	35399448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481809_35571319_35571434_35631843
ENSMUST00000235622.2	chr18	+	549	3	FSM	ENSMUSG00000118365.2	ENSMUST00000235622.2	549	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAGGCAGGAATGTTT	NA	NA	NA	NA	NA	NA	NA	NA	52661732	52710397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_52661819_52696727_52696947_52710153
ENSMUST00000235679.2	chr18	+	1190	4	FSM	ENSMUSG00000117869.2	ENSMUST00000235679.2	1190	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCACTGTGTAGTTGGTC	NA	NA	NA	NA	NA	NA	NA	NA	35686423	35691369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389
ENSMUST00000235680.2	chr19	-	929	5	FSM	ENSMUSG00000041845.12	ENSMUST00000235680.2	1151	5	0	222	0	221	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTCTGGAACCATTATAG	NA	NA	NA	NA	NA	NA	NA	NA	4489428	4475916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4476285_4476607_4476790_4482082_4482193_4482795_4482884_4489247
ENSMUST00000235701.2	chr19	-	1905	12	FSM	ENSMUSG00000024926.11	ENSMUST00000235701.2	1905	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCAGGAGTTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	5660076	5653044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879
ENSMUST00000235745.2	chr18	-	575	6	NNC	ENSMUSG00000024645.6	novel	2418	6	NA	NA	859	-1347	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGGAAGTGCAGTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	84968790	84965662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr18_-_84965871_84965958_84966065_84966147_84966222_84967318_84967417_84967514_84967578_84968764
ENSMUST00000235759.2	chr18	-	495	1	FSM	ENSMUSG00000118240.2	ENSMUST00000235759.2	495	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTCTCTCTGCCCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	53354958	53354463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_53354500_53355000
ENSMUST00000235799.2	chr18	+	1300	7	FSM	ENSMUSG00000024537.6	ENSMUST00000235799.2	1300	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	67774670	67787232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_67775049_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
ENSMUST00000235849.2	chr18	+	726	5	FSM	ENSMUSG00000057561.11	ENSMUST00000235849.2	726	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTAAAATCTCTCCAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	46730776	46749523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_46730868_46731707_46731768_46740570_46740810_46748859_46748995_46749322
ENSMUST00000235858.2	chr17	-	1528	7	FSM	ENSMUSG00000118341.2	ENSMUST00000235858.2	1528	7	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATATATAATAAATAAATCT	NA	NA	NA	NA	NA	NA	NA	NA	31142805	30678475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_30678577_30732529_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_31142559
ENSMUST00000235900.2	chr19	+	1884	9	FSM	ENSMUSG00000024785.8	ENSMUST00000235900.2	1884	9	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAATCTGGGATTTTATCT	NA	NA	NA	NA	NA	NA	NA	NA	29078774	29121329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120546
ENSMUST00000235913.2	chr19	-	790	1	FSM	ENSMUSG00000118238.2	ENSMUST00000235913.2	790	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAATGTACACTAAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	25324567	25323777	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_25323800_25324600
ENSMUST00000235915.2	chr17	+	954	10	FSM	ENSMUSG00000001576.16	ENSMUST00000235915.2	1132	10	0	178	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCCTGTCCAGCCCAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	26813849	26874148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_26813951_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26874040
ENSMUST00000235920.2	chr19	-	655	1	FSM	ENSMUSG00000118181.2	ENSMUST00000235920.2	655	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGATCTGTGGTTTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	6807231	6806576	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6806600_6807200
ENSMUST00000235927.2	chr19	+	705	5	FSM	ENSMUSG00000048832.10	ENSMUST00000235927.2	2690	5	14	1971	0	-1966	multi-exon	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTTTGCCGGAGCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	10666128	10690019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_10666348_10683573_10683673_10687633_10687806_10688634_10688718_10689887
ENSMUST00000235941.2	chr19	-	1833	9	NNC	ENSMUSG00000024803.10	novel	2020	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCGTGTTCTAAGGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	36097310	36089364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_36090218_36092376_36092476_36092598_36092698_36092872_36092959_36094155_36094270_36095233_36095342_36095625_36095764_36096618_36096799_36097154
ENSMUST00000235964.2	chr19	-	833	7	FSM	ENSMUSG00000071662.5	ENSMUST00000235964.2	833	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTCATGGAAATGTTG	NA	NA	NA	NA	NA	NA	NA	NA	8775817	8770548	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8774599_8774760_8775587
ENSMUST00000235966.2	chr18	+	755	6	FSM	ENSMUSG00000024608.12	ENSMUST00000235966.2	755	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGGTTCTGGTGTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	60880220	60911617	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_60880294_60907581_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502
ENSMUST00000235977.2	chr19	-	1050	9	FSM	ENSMUSG00000036748.17	ENSMUST00000235977.2	1050	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	NA	NA	NA	NA	NA	NA	NA	NA	46327077	46318978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320080_46320195_46320258_46320351_46320496_46321056_46321141_46327007
ENSMUST00000235992.2	chr18	+	443	1	FSM	ENSMUSG00000118264.2	ENSMUST00000235992.2	443	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAGGCCATTAAAGACTGG	NA	NA	NA	NA	NA	NA	NA	NA	64421428	64421871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_64421400_64421900
ENSMUST00000236020.2	chr18	+	857	5	FSM	ENSMUSG00000037058.17	ENSMUST00000236020.2	857	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCAAATTAAATCACCTCC	NA	NA	NA	NA	NA	NA	NA	NA	35731693	35749572	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_35731813_35733097_35733171_35743923_35744088_35746375_35746556_35749251
ENSMUST00000236029.2	chr18	-	785	5	ISM	ENSMUSG00000024644.18	ENST00000324301.12	1116	8	5872	898	5872	-898	internal_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGCTACCCTTTGGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	84693333	84687055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101
ENSMUST00000236067.2	chr19	-	865	6	NNC	ENSMUSG00000025035.10	novel	1005	7	NA	NA	14701	-11	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCTCTGCATAGTTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	46546831	46519556	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_46519826_46529881_46529969_46530790_46530977_46531920_46531972_46540011_46540129_46546676
ENSMUST00000236081.2	chr18	+	465	3	ISM	ENSMUSG00000024614.8	ENSMUST00000025515.7	4611	16	26900	3084	25778	629	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAAGATTGAGACTTCA	NA	NA	NA	NA	NA	NA	NA	NA	90555177	90558307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_90555329_90556622_90556692_90558062
ENSMUST00000236085.2	chr18	+	1361	8	FSM	ENSMUSG00000024425.5	ENSMUST00000236085.2	1796	8	77	358	15	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGTTCTCAATTAGT	NA	NA	NA	NA	NA	NA	NA	NA	38552036	38597892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597329
ENSMUST00000236099.2	chr19	-	1529	5	FSM	ENSMUSG00000024666.7	ENSMUST00000236099.2	1529	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGTGTCTTCATGGT	NA	NA	NA	NA	NA	NA	NA	NA	10554451	10547841	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554233
ENSMUST00000236161.2	chr17	-	641	5	FSM	ENSMUSG00000057411.10	ENSMUST00000236161.2	641	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATCCTGACTTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	26011051	26009484	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26010975
ENSMUST00000236166.2	chr17	+	1047	5	FSM	ENSMUSG00000024181.10	ENSMUST00000236166.2	1047	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	26342473	26345587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345265
ENSMUST00000236211.2	chr19	-	423	2	ISM	ENSMUSG00000060803.7	ENSMUST00000237893.2	806	7	1984	-2	1984	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	4085993	4085408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4085662_4085823
ENSMUST00000236229.2	chr19	-	1386	13	FSM	ENSMUSG00000024926.11	ENSMUST00000236229.2	1386	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACACTACCCATTGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	5660057	5653445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879_5659947_5660045
ENSMUST00000236238.2	chr18	-	723	6	ISM	ENSMUSG00000024500.21	ENST00000394411.9	2622	10	59	56875	59	-55876	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGAAGAGTGTTTGCCAATG	NA	NA	NA	NA	NA	NA	NA	NA	43032514	42834668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_42834713_42864851_42864965_42870965_42871132_42874160_42874259_43031809_43032004_43032406
ENSMUST00000236255.2	chr19	-	1005	7	FSM	ENSMUSG00000025035.10	ENSMUST00000236255.2	1005	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGTTGAAATAGTATTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	46561637	46519545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_46519826_46529881_46529950_46530790_46530977_46531920_46531972_46540011_46540129_46546676_46546821_46561478
ENSMUST00000236268.2	chr17	-	2038	8	FSM	ENSMUSG00000036775.14	ENSMUST00000236268.2	2038	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTGATTCTACCATGGA	NA	NA	NA	NA	NA	NA	NA	NA	26309249	26300203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26301236_26301849_26302068_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
ENSMUST00000236305.2	chr17	-	882	1	FSM	ENSMUSG00000118161.2	ENSMUST00000236305.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2243	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	31863753	31862871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_31862900_31863800
ENSMUST00000236359.2	chr17	-	515	2	FSM	ENSMUSG00000117799.2	ENSMUST00000236359.2	515	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATGGGTGTGGTGACAC	NA	NA	NA	NA	NA	NA	NA	NA	27270388	27267249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_27267726_27270349
ENSMUST00000236370.2	chr19	-	662	4	FSM	ENSMUSG00000084957.4	ENSMUST00000236370.2	662	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTGTTATGAATGTAAGA	NA	NA	NA	NA	NA	NA	NA	NA	53932659	53919534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932586
ENSMUST00000236414.2	chr18	+	718	4	FSM	ENSMUSG00000037058.17	ENSMUST00000236414.2	718	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCAAATTAAATCACCTCC	NA	NA	NA	NA	NA	NA	NA	NA	35733117	35749572	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_35733171_35743923_35744088_35746375_35746556_35749251
ENSMUST00000236432.2	chr19	+	580	1	FSM	ENSMUSG00000117804.2	ENSMUST00000236432.2	580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAAAGAAAATGACTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	9193744	9194324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_9193700_9194300
ENSMUST00000236451.2	chr19	-	984	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236451.2	984	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	4889298	4875393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884221_4884339_4888858_4888932_4889224
ENSMUST00000236476.2	chr17	+	317	3	ISM	ENSMUSG00000024301.11	ENSMUST00000078961.6	2631	11	82	11495	82	-11495	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	390	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTGTCACAGACCCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	27136146	27140062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_27136260_27139770_27139906_27139993
ENSMUST00000236518.2	chr19	+	1296	9	FSM	ENSMUSG00000024909.16	ENSMUST00000236518.2	2154	9	0	858	0	-63	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGCTACCGGGCCAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	5524951	5531687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
ENSMUST00000236529.2	chr19	+	580	5	NNC	ENSMUSG00000024940.12	novel	1561	12	NA	NA	3163	-316	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCGGGGCGGTATGCGAG	NA	NA	NA	NA	NA	NA	NA	NA	5806821	5807804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_+_5806960_5807062_5807204_5807338_5807501_5807582_5807656_5807738
ENSMUST00000236552.2	chr19	-	626	1	FSM	ENSMUSG00000117779.2	ENSMUST00000236552.2	626	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGTCTAGCCTCGATGCA	NA	NA	NA	NA	NA	NA	NA	NA	3872389	3871763	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_3871800_3872400
ENSMUST00000236574.2	chr18	-	596	4	FSM	ENSMUSG00000024352.13	ENST00000507779.2	602	4	6	0	6	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTCCCATTTTTCTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	35795175	35793109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_35793398_35793496_35793628_35793844_35793911_35795064
ENSMUST00000236627.2	chr17	-	733	8	FSM	ENSMUSG00000073422.12	ENSMUST00000236627.2	733	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTTCTTCTTGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	34247016	34245006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246975
ENSMUST00000236683.2	chr17	-	627	5	FSM	ENSMUSG00000057411.10	ENSMUST00000236683.2	627	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	26011361	26009479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011304
ENSMUST00000236685.2	chr19	+	1197	5	FSM	ENSMUSG00000025209.6	ENSMUST00000236685.2	2195	5	467	531	-428	474	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATAGCCCTGGCTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	44994568	45000670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_44994627_44997718_44997960_44998570_44998679_44998856_44998999_45000022
ENSMUST00000236687.2	chr19	+	1178	8	FSM	ENSMUSG00000024875.6	ENSMUST00000236687.2	1178	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTTGACCCTGGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	5138955	5142533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5139226_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5141568_5141725_5142156_5142251_5142329
ENSMUST00000236718.2	chr19	+	613	4	ISM	ENSMUSG00000040385.8	ENSMUST00000046094.6	1473	7	1612	380	1466	-361	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAGGCCGGCCCATCACTC	NA	NA	NA	NA	NA	NA	NA	NA	4243675	4245039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4243871_4244465_4244690_4244770_4244906_4244980
ENSMUST00000236737.2	chr1	-	300	4	FSM	ENSMUSG00000117809.2	ENSMUST00000236737.2	300	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCACATAACCATGTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	53391778	53387637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_53387718_53389145_53389222_53390038_53390093_53391688
ENSMUST00000236740.2	chr17	-	1567	7	FSM	ENSMUSG00000061232.17	ENSMUST00000236740.2	1567	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTCACTATGCTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	34219279	34214997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_34215478_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
ENSMUST00000236801.2	chr19	-	1005	7	FSM	ENSMUSG00000059734.8	ENSMUST00000236801.2	1005	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGTGTTGTTCCATTT	NA	NA	NA	NA	NA	NA	NA	NA	3962488	3958862	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962202
ENSMUST00000236812.2	chr18	-	686	3	ISM	ENSMUSG00000024645.6	ENSMUST00000025547.4	2418	6	3381	1096	3381	-1096	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGTTAAAAGCATTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	84966268	84965411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_84965871_84965958_84966065_84966147
ENSMUST00000236853.2	chr17	-	6226	17	FSM	ENSMUSG00000024039.16	ENSMUST00000236853.2	6226	17	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTGTTTGTTTCTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	31856173	31827867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
ENSMUST00000236910.2	chr17	-	1375	6	ISM	ENSMUSG00000062202.15	ENSMUST00000236584.2	1535	7	-50	148927	3	-4002	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAACAAAAAACCCAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	30795233	30732449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
ENSMUST00000236917.2	chr19	+	813	5	FSM	ENSMUSG00000024902.6	ENSMUST00000236917.2	813	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTCTCAGCTTCTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	5012375	5014972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533_5013718_5014701
ENSMUST00000236948.2	chr17	+	833	6	ISM	ENSMUSG00000033826.11	ENST00000327475.11	13751	91	85101	145928	85101	-145928	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCCAGCACAGGTGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	30940014	30948203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_30940173_30941872_30942027_30944055_30944220_30945759_30945863_30947136_30947242_30948054
ENSMUST00000236962.2	chr19	-	1478	6	NNC	ENSMUSG00000025024.8	novel	1948	6	NA	NA	4	1	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAGGATGTGCGCCCCT	NA	NA	NA	NA	NA	NA	NA	NA	53379005	53368309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_53369033_53369671_53369826_53371987_53372167_53372884_53373028_53377733_53377854_53378846
ENSMUST00000236963.2	chr17	-	1010	3	FSM	ENSMUSG00000002274.14	ENSMUST00000236963.2	1010	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTAGTCATGGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	26015697	26013798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26014266_26014347_26014408_26015214
ENSMUST00000236964.2	chr19	-	1960	11	ISM	ENSMUSG00000024926.11	ENSMUST00000235701.2	1905	12	266	-1	247	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTATCAGGAGTTCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	5659810	5653043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490
ENSMUST00000236971.2	chr18	-	549	3	FSM	ENSMUSG00000024352.13	ENST00000509959.5	638	3	24	65	-3	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTCCCATTTTTCTTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	35795184	35793108	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_35793407_35793496_35793628_35795064
ENSMUST00000236980.2	chr19	-	999	9	FSM	ENSMUSG00000036748.17	ENSMUST00000236980.2	999	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	46327056	46318984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46327007
ENSMUST00000237025.2	chr19	+	941	7	FSM	ENSMUSG00000024875.6	ENSMUST00000237025.2	941	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTTGACCCTGGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	5138587	5142533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5142156_5142251_5142329
ENSMUST00000237048.2	chr17	-	1944	11	FSM	ENSMUSG00000062202.15	ENSMUST00000237048.2	1944	11	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGTGGGCCTGGATGGAG	NA	NA	NA	NA	NA	NA	NA	NA	30790820	30439322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_30439545_30447773_30447853_30493827_30493936_30518504_30518695_30553196_30553307_30732529_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30790766
ENSMUST00000237084.2	chr19	+	686	3	FSM	ENSMUSG00000056612.8	ENSMUST00000237084.2	686	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTTTTATATTGACTC	NA	NA	NA	NA	NA	NA	NA	NA	6952608	6954618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_6952875_6953911_6953996_6954282
ENSMUST00000237096.2-1	chr19	+	568	4	ISM	ENSMUSG00000040385.8	ENSMUST00000046094.6	1473	7	108	1548	-38	-1529	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	377	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGAGTGGTTGTGGGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	4242171	4243871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765
ENSMUST00000237117.2	chr19	+	826	8	ISM	ENSMUSG00000080268.5	ENSMUST00000116567.4	1388	10	4767	294	229	-290	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTCCATCCCTGACCAG	NA	NA	NA	NA	NA	NA	NA	NA	5096148	5099651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
ENSMUST00000237183.2	chr17	+	1743	6	FSM	ENSMUSG00000041199.4	ENSMUST00000237183.2	1743	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGACCATGAGCATATCT	NA	NA	NA	NA	NA	NA	NA	NA	25946643	25950438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_25946822_25947225_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
ENSMUST00000237261.2	chr19	-	243	1	FSM	ENSMUSG00000118197.2	ENSMUST00000237261.2	243	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTACGTTCCTGAGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	61293718	61293475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_61293500_61293700
ENSMUST00000237265.2	chr17	-	1993	9	FSM	ENSMUSG00000036775.14	ENSMUST00000237265.2	1993	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTGATTCTACCATGGA	NA	NA	NA	NA	NA	NA	NA	NA	26309194	26300203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_26301236_26301944_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
ENSMUST00000237275.2	chr18	+	2593	2	FSM	ENSMUSG00000117798.2	ENSMUST00000237275.2	2593	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGGAAAACAATTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	67107235	67110236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_67108076_67108483
ENSMUST00000237291.2	chr18	+	1169	2	ISM	ENSMUSG00000046668.10	ENST00000302517.8	2560	3	113	2471	105	-2471	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCTGGCTGAGAGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	35962945	35992267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_35963293_35991445
ENSMUST00000237335.2	chr18	-	973	1	FSM	ENSMUSG00000117929.2	ENSMUST00000237335.2	973	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGGGGTGTGCTCTCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	45204361	45203388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_45203400_45204400
ENSMUST00000237338.2	chr19	-	1843	9	NNC	ENSMUSG00000024803.10	novel	1818	9	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCCGTGTTCTAAGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	36097310	36089366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_36090209_36092369_36092492_36092598_36092698_36092872_36092972_36094170_36094270_36095233_36095342_36095625_36095764_36096618_36096799_36097154
ENSMUST00000237341.2	chr19	-	780	7	FSM	ENSMUSG00000059734.8	ENSMUST00000237341.2	780	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACCTGTTGTGTTGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	3962774	3958866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962709
ENSMUST00000237431.2	chr18	+	1326	9	FSM	ENSMUSG00000062328.9	ENSMUST00000237431.2	1326	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATATGACTGTCTAGTAG	NA	NA	NA	NA	NA	NA	NA	NA	75131628	75136451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_75131917_75132048_75132285_75133519_75133615_75134261_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUST00000237444.2	chr19	+	466	3	ISM	ENSMUSG00000024900.6	ENSMUST00000025835.6	4317	19	51755	7235	51755	-7235	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGGTAAGACCATGGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	3425039	3428498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_3425210_3426410_3426576_3428367
ENSMUST00000237465.2	chr19	+	592	3	FSM	ENSMUSG00000024661.8	ENSMUST00000237465.2	592	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGACCAGTAACTTTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	9960086	9962107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_9960348_9961544_9961692_9961923
ENSMUST00000237478.2	chr18	+	1680	3	FSM	ENSMUSG00000057561.11	ENSMUST00000237478.2	2165	3	216	269	0	-191	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAAAGTTACCTACTATA	NA	NA	NA	NA	NA	NA	NA	NA	46731080	46742047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_46731224_46731707_46731768_46740570
ENSMUST00000237519.2	chr19	-	679	5	NNC	ENSMUSG00000024942.20	novel	2115	19	NA	NA	-179	-21305	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTAGGATCCCCAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	6065415	6061326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065327
ENSMUST00000237529.2	chr19	-	1480	6	FSM	ENSMUSG00000025024.8	ENSMUST00000237529.2	1480	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTAGGATGTGCGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	53378472	53368310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_53369033_53369671_53369826_53371987_53372150_53372884_53373028_53377733_53377854_53378293
ENSMUST00000237565.2	chr19	-	429	2	ISM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	1380	2	1380	-2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	NA	NA	NA	NA	NA	NA	NA	4090883	4090286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4090540_4090707
ENSMUST00000237572.2	chr18	-	301	4	ISM	ENSMUSG00000054008.10	ENST00000523767.5	3494	14	39750	1222	16317	-1222	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGGGATTTTGGTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	60830144	60823128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_60823139_60824249_60824360_60828407_60828583_60830138
ENSMUST00000237627.2	chr19	-	1671	2	ISM	ENSMUSG00000024846.7	ENSMUST00000025764.6	3951	3	1080	1772	1080	-1772	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGCACCCCTCCCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	5398522	5396504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5398078_5398424
ENSMUST00000237630.2	chr19	-	778	4	FSM	ENSMUSG00000057506.6	ENSMUST00000237630.2	778	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTTTGGTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	44134882	44127684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_44128153_44130562_44130668_44131459_44131580_44134797
ENSMUST00000237650.2	chr19	-	488	4	ISM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	735	110	735	-110	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAACATGTGAACCGTCCC	NA	NA	NA	NA	NA	NA	NA	NA	4091528	4090394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397
ENSMUST00000237700.2	chr18	+	1684	8	FSM	ENSMUSG00000079614.5	ENSMUST00000237700.2	1684	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTTGTGAGACCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	67908044	67925663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933
ENSMUST00000237734.2	chr19	+	436	3	NNC	ENSMUSG00000040385.8	novel	1203	6	NA	NA	-52	-2184	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	800	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCATCAACCGCATTTATG	NA	NA	NA	NA	NA	NA	NA	NA	4242157	4243216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_+_4242271_4242748_4242876_4243020
ENSMUST00000237738.2	chr19	-	1357	8	FSM	ENSMUSG00000024792.10	ENSMUST00000237738.2	1357	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	6134986	6130791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134079_6134381_6134492_6134824
ENSMUST00000237760.2	chr19	-	1197	4	FSM	ENSMUSG00000094936.9	ENSMUST00000237760.2	1197	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGGGTATGTGTGCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	4843908	4835184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4835596_4840184_4840339_4842425_4842849_4843699
ENSMUST00000237765.2	chr19	+	729	2	ISM	ENSMUSG00000025076.13	ENSMUST00000026062.10	2350	7	39567	903	39567	-903	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCAAAGGTGGCTGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	56425127	56429873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_56425281_56429297
ENSMUST00000237792.2	chr18	-	1024	3	FSM	ENSMUSG00000024346.7	ENSMUST00000237792.2	1024	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGTTGCCTTGCATTT	NA	NA	NA	NA	NA	NA	NA	NA	36587577	36536728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_36537514_36584132_36584300_36587505
ENSMUST00000237795.2	chr18	-	567	5	ISM	ENSMUSG00000117679.2	ENSMUST00000001415.9	2067	13	2880	3830	2880	-3830	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACTCTCTGAAGCTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	36809539	36808036	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415
ENSMUST00000237800.2	chr18	-	1099	4	ISM	ENSMUSG00000044906.7	ENSMUST00000067556.4	2291	9	0	15105	0	-15051	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAATATAAATGGAAAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	70605551	70601315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_70601589_70602519_70602849_70604743_70605051_70605361
ENSMUST00000237804.2	chr19	+	667	5	ISM	ENSMUSG00000024740.11	ENST00000679588.1	4132	27	13183	7673	13183	-7167	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGGGCTCAACATCGAG	NA	NA	NA	NA	NA	NA	NA	NA	10596357	10599509	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425
ENSMUST00000237840.2	chr19	+	472	4	FSM	ENSMUSG00000038274.14	ENSMUST00000237840.2	472	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTCTTATGTTTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	6108252	6109546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000237849.2	chr17	-	938	2	ISM	ENSMUSG00000002274.14	ENSMUST00000236963.2	1010	3	1310	-431	1310	431	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGGCAGAGAGCCTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	26014387	26013367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_26014266_26014347
ENSMUST00000237859.2	chr19	+	450	5	FSM	ENSMUSG00000038274.14	ENSMUST00000237859.2	450	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGCCATGCTAATAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	6107971	6109516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_6108032_6108304_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000237870.2	chr18	+	992	2	FSM	ENSMUSG00000006850.9	ENSMUST00000237870.2	992	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTTGTTGTTGTTAATG	NA	NA	NA	NA	NA	NA	NA	NA	36868127	36869250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_36868310_36868440
ENSMUST00000237882.2	chr18	-	496	5	ISM	ENSMUSG00000024493.10	ENST00000674191.1	3133	28	36536	150	36536	-150	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCACAGTGAGAAGACACT	NA	NA	NA	NA	NA	NA	NA	NA	42347912	42335709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824
ENSMUST00000237893.2	chr19	-	806	7	FSM	ENSMUSG00000060803.7	ENSMUST00000237893.2	806	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGAGGTGTCTTTGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	4087977	4085410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087865
ENSMUST00000237919.2	chr18	-	2134	7	FSM	ENSMUSG00000024349.11	ENSMUST00000237919.2	2134	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTGGCCTAGTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	35873532	35866733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_35867752_35868155_35868343_35868931_35869171_35871733_35871843_35872092_35872274_35872403_35872631_35873359
ENSMUST00000237930.2	chr19	-	649	6	ISM	ENSMUSG00000063904.5	ENST00000530165.5	1985	16	7031	6909	7031	-6909	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCCTATGCCGCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	4971244	4966781	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168
ENSMUST00000237934.2	chr19	-	1729	8	FSM	ENSMUSG00000024958.14	ENSMUST00000237934.2	1729	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCTGTCACTCGTCT	NA	NA	NA	NA	NA	NA	NA	NA	6918587	6915437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_6915898_6916123_6916243_6916379_6916509_6916628_6916779_6916896_6917123_6917719_6917770_6917850_6918318_6918459
ENSMUST00000237950.2	chr17	+	1046	5	NNC	ENSMUSG00000024181.10	novel	1068	5	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	1074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	26342493	26345587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_+_26342824_26343529_26343693_26344242_26344366_26344451_26344539_26345244
ENSMUST00000237986.2	chr18	-	203	1	FSM	ENSMUSG00000117849.2	ENSMUST00000237986.2	203	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAGGCGGCAGCCACTAG	NA	NA	NA	NA	NA	NA	NA	NA	82748106	82747903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_82747900_82748100
ENSMUST00000238036.2	chr19	+	1291	9	FSM	ENSMUSG00000071655.13	ENSMUST00000238036.2	1291	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	458	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGAGGGGCTGGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	8848956	8853227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUST00000238046.2	chr17	-	722	8	NNC	ENSMUSG00000061613.14	novel	923	8	NA	NA	5	-169	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCGGTCAAGAGACCGGGA	NA	NA	NA	NA	NA	NA	NA	NA	31877738	31866223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870742_31870783_31873952_31874041_31877626
ENSMUST00000238093.2	chr19	+	1018	7	FSM	ENSMUSG00000024875.6	ENSMUST00000238093.2	1018	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTTGACCCTGGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	5138572	5142533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5141568_5141725_5142329
ENSMUST00000238267.2	chr2	+	1071	7	FSM	ENSMUSG00000027523.21	ENSMUST00000238267.2	1071	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	NA	NA	NA	NA	NA	NA	NA	174186109	174188537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_174186170_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ENSMUST00000238271.2	chr17	-	403	4	ISM	ENSMUSG00000036438.15	ENSMUST00000040440.7	1205	6	0	2214	0	-1961	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATTCCGTGTGTTTGATA	NA	NA	NA	NA	NA	NA	NA	NA	87754363	87743053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_87743139_87743218_87743363_87750123_87750155_87754220
ENSMUST00000238318.2	chr2	+	1633	11	NNC	ENSMUSG00000027523.21	novel	1789	11	NA	NA	15	-64	at_least_one_novel_splicesite	FALSE	non_canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATAAAAGCAGCAACAG	NA	NA	NA	NA	NA	NA	NA	NA	174171813	174188430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_+_174172194_174176004_174176078_174183442_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ENSMUST00000238339.2	chr8	+	1442	10	FSM	ENSMUSG00000031600.12	ENSMUST00000238339.2	1442	10	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCCGGAGTTTTGACTA	NA	NA	NA	NA	NA	NA	NA	NA	40964908	40997082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_40965275_40979967_40980043_40981358_40981474_40982149_40982251_40989910_40990137_40992350_40992422_40993719_40993848_40993929_40993989_40994065_40994135_40996850
ENSMUST00000238339.2-0	chr8	+	1329	10	FSM	ENSMUSG00000031600.12	ENSMUST00000238339.2	1442	10	0	113	0	-113	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATAGCTTCAAGGAAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	40964908	40996969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_40965275_40979967_40980043_40981358_40981474_40982149_40982251_40989910_40990137_40992350_40992422_40993719_40993848_40993929_40993989_40994065_40994135_40996850
ENSMUST00000238346.2	chr2	-	457	2	FSM	ENSMUSG00000026872.19	ENST00000475115.3	535	2	62	16	0	-16	multi-exon	FALSE	canonical	NA	NA	NA	NA	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACACAATTTGCTTTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	45007407	45006452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_45006714_45007211
ENSMUST00000238375.2	chr12	-	3233	1	FSM	ENSMUSG00000118449.2	ENSMUST00000238375.2	3233	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGCCACTCCCCTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	4643029	4639796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_4639800_4643000
ENSMUST00000238482.2	chrX	+	1163	2	FSM	ENSMUSG00000095562.9	ENSMUST00000238482.2	1163	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGAAGCCTGCGCCGACCG	NA	NA	NA	NA	NA	NA	NA	NA	168792990	168801792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_168794060_168801698
ENSMUST00000238492.2	chr8	+	1672	8	FSM	ENSMUSG00000031799.11	ENSMUST00000238492.2	2044	8	0	372	0	-372	multi-exon	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCGGGAATGACACTAATA	NA	NA	NA	NA	NA	NA	NA	NA	72889651	72906612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_72889765_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
ENSMUST00000238499.2	chrX	+	857	3	FSM	ENSMUSG00000095474.3	ENSMUST00000238499.2	857	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTTGGCAATGGTTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	122485982	122511869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_122486100_122491396_122491438_122511170
ENSMUST00000238573.2	chr2	+	1094	5	FSM	ENSMUSG00000034059.15	ENSMUST00000238573.2	1585	5	65	426	65	-426	multi-exon	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGGTAGTTTATCCACCC	NA	NA	NA	NA	NA	NA	NA	NA	84564466	84568573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_84564638_84567073_84567310_84567407_84567452_84567763_84567873_84568039
ENSMUST00000238657.2	chr8	-	3783	7	FSM	ENSMUSG00000054648.9	ENSMUST00000238657.2	3783	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGTCAATGTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	70169474	70157786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163635_70165926_70166016_70166951_70167060_70168933
ENSMUST00000238678.2	chr2	-	1597	1	FSM	ENSMUSG00000074629.4	ENSMUST00000238678.2	1597	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAATTAAA	NA	NA	NA	NA	NA	NA	NA	NA	156700132	156698535	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_156698500_156700100
ENSMUST00000238703.2	chr8	+	433	5	FSM	ENSMUSG00000118487.2	ENSMUST00000238703.2	433	5	0	0	0	0	multi-exon	FALSE	non_canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGGGGGAATGGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	85392073	85395374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_85392228_85392392_85392495_85395001_85395069_85395193_85395243_85395313
ENSMUST00000238724.2	chr13	-	2459	1	FSM	ENSMUSG00000042874.3	ENSMUST00000238724.2	2459	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTGACGTGAGTTACAAA	NA	NA	NA	NA	NA	NA	NA	NA	32987074	32984615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_32984600_32987100
ENSMUST00000238758.2	chrY	+	1272	3	FSM	ENSMUSG00000096768.9	ENSMUST00000238758.2	1272	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGATATGCAGATGTGT	NA	NA	NA	NA	NA	NA	NA	NA	90796179	90827727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrY_+_90797249_90804593_90804687_90827617
ENSMUST00000238784.2	chr12	-	875	6	NNC	ENSMUSG00000049882.11	novel	1109	6	NA	NA	0	-223	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGAAGACTGCCTCACAG	NA	NA	NA	NA	NA	NA	NA	NA	69629884	69624624	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629304_69629405_69629494
ENSMUST00000238792.2	chr7	-	1503	12	FSM	ENSMUSG00000030619.11	ENSMUST00000238792.2	1503	12	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATTTTTTCCTAGTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	89629910	89604144	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ENSMUST00000238825.2	chr11	+	2997	8	FSM	ENSMUSG00000020610.18	ENSMUST00000238825.2	2997	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTCATTTCGCGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	109317045	109328974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
ENSMUST00000238842.2	chr8	-	2520	8	FSM	ENSMUSG00000062991.10	ENSMUST00000238842.2	2520	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAACAATTTATTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	32408596	32307988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_32308711_32311269_32311477_32312254_32312386_32314471_32314599_32316280_32316384_32328288_32328357_32339337_32339468_32407564
ENSMUST00000238903.2	chr11	-	1591	8	FSM	ENSMUSG00000053519.18	ENSMUST00000238903.2	1591	8	0	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTCAATTACTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	33942988	33579789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_33580599_33583147_33583211_33584578_33584684_33592430_33592539_33593295_33593367_33594498_33594569_33595502_33595628_33942748
ENSMUST00000238921.2	chr11	-	459	4	FSM	ENSMUSG00000018427.9	ENSMUST00000238921.2	459	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATAGCATCCATCCGGT	NA	NA	NA	NA	NA	NA	NA	NA	86862850	86831424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_86831515_86835398_86835508_86836758_86836803_86862634
ENSMUST00000238930.2	chr9	-	862	4	FSM	ENSMUSG00000040883.19	ENSMUST00000238930.2	862	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGCCATGGTCATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	21838831	21832305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838582
ENSMUST00000238938.2	chr12	-	348	1	FSM	ENSMUSG00000118552.2	ENSMUST00000238938.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	417	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTGCTCCCCTGCAAAT	NA	NA	NA	NA	NA	NA	NA	NA	75678092	75677744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_75677700_75678100
ENSMUST00000238978.2	chr11	-	2721	1	FSM	ENSMUSG00000046731.6	ENSMUST00000238978.2	2721	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACGTGTAAAGGCCACTA	NA	NA	NA	NA	NA	NA	NA	NA	69771811	69769090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_69769100_69771800
ENSMUST00000239016.2	chr11	-	1849	8	FSM	ENSMUSG00000042709.16	ENSMUST00000239016.2	1849	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGTGAATCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	60307925	60291463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307576
ENSMUST00000239030.2	chr4	+	2160	9	FSM	ENSMUSG00000028710.19	ENSMUST00000239030.2	2160	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCCACACCCCCACACAC	NA	NA	NA	NA	NA	NA	NA	NA	115642180	115669511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_115642502_115645458_115645568_115647777_115647829_115648419_115648483_115652600_115652652_115653951_115654000_115655162_115655259_115657514_115657623_115668198
ENSMUST00000239075.2	chr2	+	1163	9	FSM	ENSMUSG00000026921.21	ENSMUST00000239075.2	1163	9	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	26476641	26482693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482293_26482429
ENSMUST00000239081.2	chr7	+	1512	4	FSM	ENSMUSG00000042978.12	ENST00000671413.3	1512	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1280	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCTGCAGCGCAGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	125848033	125891821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_125848285_125889028_125889262_125890214_125890418_125890996
ENSMUST00000239099.2	chr14	-	880	5	FSM	ENSMUSG00000021951.8	ENSMUST00000239099.2	880	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGTCATGAGGTTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	57809069	57787053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_57787337_57787818_57788100_57795490_57795574_57803378_57803542_57808999
ENSMUST00000239113.2	chrX	-	3015	7	FSM	ENSMUSG00000031266.8	ENSMUST00000239113.2	3015	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAAATTTCAAATA	NA	NA	NA	NA	NA	NA	NA	NA	133501754	133488934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_133490877_133491694_133491893_133492813_133492976_133494382_133494475_133495928_133496107_133497023_133497199_133501486
ENSMUST00000239176.2	chr8	+	1113	6	FSM	ENSMUSG00000046408.16	ENSMUST00000239176.2	1113	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGGAAGAGGTGCGGCT	NA	NA	NA	NA	NA	NA	NA	NA	84728205	84731299	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_84728535_84729489_84729632_84729744_84729846_84729924_84730111_84730553_84730689_84731079
ENSMUST00000239199.2	chr2	-	1105	2	FSM	ENSMUSG00000074813.15	ENSMUST00000239199.2	1105	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTGTTTCTTAGCTAAT	NA	NA	NA	NA	NA	NA	NA	NA	128271791	128214020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_128214348_128271013
ENSMUST00000239221.2	chr2	-	1999	3	FSM	ENSMUSG00000074813.15	ENSMUST00000239221.2	1999	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGACAGTTTTTCCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	128271311	128158096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_128159593_128172764_128172970_128271013
ENSMUST00000239275.2	chr2	-	1797	3	FSM	ENSMUSG00000074813.15	ENSMUST00000239275.2	1797	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACGTGGTCCCCTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	128175788	128158216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_128159593_128172764_128172970_128175572
ENSMUST00000239344.2	chr9	-	512	3	ISM	ENSMUSG00000097195.11	ENSMUST00000239327.2	705	5	923	0	0	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	88404018	88403104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_88403502_88403702_88403770_88403970
ENSMUST00000239358.2	chr2	-	1602	3	NNC	ENSMUSG00000074813.15	novel	1797	3	NA	NA	2508	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACGTGGTCCCCTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	128173225	128158216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_-_128159593_128172764_128172970_128173204
ENSMUST00000239365.2	chr9	-	809	6	FSM	ENSMUSG00000097195.11	ENSMUST00000239365.2	809	6	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	88404970	88403104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404682_88404903
ENSMUST00000239401.2	chr10	+	1101	2	FSM	ENSMUSG00000020308.8	ENSMUST00000239401.2	1101	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCCTTGCTGGTCACCT	NA	NA	NA	NA	NA	NA	NA	NA	79505243	79511960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_79505618_79511233
ENSMUST00000239410.2	chr11	-	1900	15	FSM	ENSMUSG00000014195.17	ENSMUST00000239410.2	1900	15	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACCATGAGTGTGGACA	NA	NA	NA	NA	NA	NA	NA	NA	100511014	100473880	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353_100510639_100510851
ENSMUST00000239417.2	chr9	-	1242	4	FSM	ENSMUSG00000032062.4	ENSMUST00000239417.2	1242	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGATTGATTGTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	50657821	50650990	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_50652050_50652595_50652661_50653560_50653599_50657741
ENSMUST00000239426.2	chr11	-	1354	10	NNC	ENSMUSG00000014195.17	novel	1399	13	NA	NA	4587	-7	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAGAAAAAGAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	100485551	100473677	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100485449
ENSMUST00000239432.2	chr6	-	1601	7	FSM	ENSMUSG00000023456.17	ENSMUST00000239432.2	1601	7	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAACCTCTTTGTCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	124791259	124787554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
ENSMUST00000239437.2	chr11	+	1532	4	FSM	ENSMUSG00000061878.17	ENSMUST00000141798.4	1537	4	0	5	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGATCCTATCCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	116425565	116427496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_116425828_116425905_116426001_116426077_116426194_116426437
ENSMUST00000239472.2	chr9	+	988	1	FSM	ENSMUSG00000118653.2	ENSMUST00000239472.2	988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAAACATATGGT	NA	NA	NA	NA	NA	NA	NA	NA	56344740	56345728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_56344700_56345700
ENSMUST00000239497.2	chr5	+	1775	13	FSM	ENSMUSG00000028932.9	ENSMUST00000239497.2	1775	13	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTGTGTCAGTGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	21990280	22008775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_21990516_21991647_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
ENSMUST00000239499.2	chr11	-	1771	14	NIC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	100510457	100473643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490032_100490136_100492553_100492643_100510353
ENSMUST00000239508.1	chr8	+	1357	10	FSM	ENSMUSG00000118664.1	ENSMUST00000239508.1	2747	10	65	1325	65	-1325	multi-exon	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATAGAAATGGATGTGT	NA	NA	NA	NA	NA	NA	NA	NA	39473063	39618042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39617866
ENSMUST00000239564.1	chr9	+	385	3	ISM	ENSMUSG00000093803.6	ENSMUST00000239563.2	4016	11	4590	3364	4590	-3364	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGTGTGGTCTGGGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	124200416	124201395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_124200507_124200880_124201057_124201276
ENSMUST00000239995.1	chr11	+	191	1	FSM	ENSMUSG00000118859.1	ENSMUST00000239995.1	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGGTTCCTAATGTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	101495675	101495866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_101495700_101495900
ENSMUST00000240377.1	chr17	+	1849	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	258	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGGAGACTGTGGAGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	40157243	40159092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_40157200_40159100
ENSMUST00020181828.1	chr19	-	152	1	FSM	ENSMUSG00002076852.1	ENSMUST00020181828.1	152	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGGGTCCAGGCCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	5894465	5894313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5894300_5894500
ENSMUST00020181900.1	chr13	+	141	1	FSM	ENSMUSG00002075444.1	ENSMUST00020181900.1	141	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCCAGCTCCAGGATCTC	NA	NA	NA	NA	NA	NA	NA	NA	21971044	21971185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_21971000_21971200
ENSMUST00020182120.1	chr11	-	236	1	FSM	ENSMUSG00002076556.1	ENSMUST00020182120.1	236	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	370	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGCAGTCAAGAGTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	3595521	3595285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3595300_3595500
ENSMUST00020182138.1	chr2	+	246	1	FSM	ENSMUSG00002075925.1	ENSMUST00020182138.1	246	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGCTCAAGTACTGGGATT	NA	NA	NA	NA	NA	NA	NA	NA	156702224	156702470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_156702200_156702500
ENSMUST00020182243.1	chr11	-	177	1	FSM	ENSMUSG00002075304.1	ENSMUST00020182243.1	177	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTAATCTCCTCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	3594952	3594775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3594800_3595000
ENSMUST00020182475.1	chr13	+	144	1	FSM	ENSMUSG00002076329.1	ENSMUST00020182475.1	144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGGATGATGCGCGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	22219333	22219477	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_22219300_22219500
ENSMUST00020182688.1	chr9	-	141	1	FSM	ENSMUSG00002075808.1	ENSMUST00020182688.1	141	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCCAGCTCCAGGATCTC	NA	NA	NA	NA	NA	NA	NA	NA	44246402	44246261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_44246300_44246400
ENSMUST00020182756.1	chr13	-	138	1	FSM	ENSMUSG00002076907.1	ENSMUST00020182756.1	138	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGGATGATGCGCGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	23935498	23935360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_23935400_23935500
ENSMUST00020182918.1	chr11	-	84	1	FSM	ENSMUSG00002076664.1	ENSMUST00020182918.1	84	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACAGTGCTGTCTGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	120237645	120237561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_120237600_120237600
ENSMUST00020183003.1	chr17	+	107	1	FSM	ENSMUSG00002076104.1	ENSMUST00020183003.1	107	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTGTACAAACTATGTT	NA	NA	NA	NA	NA	NA	NA	NA	95072252	95072359	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_95072300_95072400
ENSMUST00020183014.1	chr1	+	141	1	FSM	ENSMUSG00002074901.1	ENSMUST00020183014.1	141	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAGCAGTCCAACGTAGG	NA	NA	NA	NA	NA	NA	NA	NA	45350832	45350973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_45350800_45351000
ENSMUST00020183146.1	chr15	+	157	1	FSM	ENSMUSG00002076870.1	ENSMUST00020183146.1	157	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAGAACCACGGAGACCA	NA	NA	NA	NA	NA	NA	NA	NA	102858210	102858367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102858200_102858400
ENSMUST00020183184.1	chr6	-	143	1	FSM	ENSMUSG00002075963.1	ENSMUST00020183184.1	143	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCTGAGGGGAAAGAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	29397575	29397432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_29397400_29397600
ENSMUST00020183200.1	chr11	+	63	1	ISM	ENSMUSG00000017119.21	ENSMUST00000103099.8	4789	24	7370	22370	3334	-18457	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAGTGTCTGAACGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	101450344	101450407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_101450300_101450400
ENSMUST00020183261.1	chr11	-	147	1	FSM	ENSMUSG00002075685.1	ENSMUST00020183261.1	147	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACATATTTAAGTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	3597325	3597178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3597200_3597300
ENSMUST00020183496.1	chr4	+	114	1	FSM	ENSMUSG00002076977.1	ENSMUST00020183496.1	114	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAGGCGAACTACCCAG	NA	NA	NA	NA	NA	NA	NA	NA	94950886	94951000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_94950900_94951000
ENSMUST00020183577.1	chr2	+	131	1	FSM	ENSMUSG00002074931.1	ENSMUST00020183577.1	131	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAGTATCAGTTTCCGCA	NA	NA	NA	NA	NA	NA	NA	NA	45001182	45001313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_45001200_45001300
ENSMUST00020183641.1	chr9	+	134	1	FSM	ENSMUSG00002076616.1	ENSMUST00020183641.1	134	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAACCGCTTTAGGAGTA	NA	NA	NA	NA	NA	NA	NA	NA	87082161	87082295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_87082200_87082300
ENSMUST00020183747.1	chr13	-	141	1	FSM	ENSMUSG00002076445.1	ENSMUST00020183747.1	141	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCCAGCTCCAGGATCTC	NA	NA	NA	NA	NA	NA	NA	NA	23718424	23718283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_23718300_23718400
ONT_simulated_read_1000182	chr19	+	1021	1	FSM	ENSMUSG00000053536.8	ENSMUST00000066039.8	4233	1	0	3212	0	-3212	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGACCTCTATCCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	31060236	31061257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_31060200_31061300
ONT_simulated_read_10005500	chr6	-	685	1	ISM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	40399	1819	40396	-1819	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTAGGAGCAGTCTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	39314210	39313525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_39313500_39314200
ONT_simulated_read_10006347	chr2	-	1576	1	ISM	ENSMUSG00000026754.17	ENSMUST00000039165.15	4869	23	47095	716	47042	-610	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACACCTTAGGTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	38908458	38906882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_38906900_38908500
ONT_simulated_read_10008908	chr6	+	989	5	ISM	ENSMUSG00000000440.13	ENSMUST00000171644.8	2125	8	0	39350	0	-39157	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGTGCCTTGCTGTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	115337911	115428010	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_115338332_115360639_115360705_115416800_115417029_115418452_115418623_115427904
ONT_simulated_read_10013685	chr15	-	688	6	ISM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	7507	729	7507	-729	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGAGTTTGCCAGTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	77847506	77843926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377
ONT_simulated_read_10017221	chr10	+	871	6	ISM	ENSMUSG00000038332.14	ENSMUST00000041438.7	2600	10	0	5875	0	-5875	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGAAGCTCTCATGGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	41763434	41778545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_41763592_41770037_41770104_41770815_41771017_41772018_41772202_41774178_41774422_41778524
ONT_simulated_read_10018073	chr3	-	1170	11	ISM	ENSMUSG00000033285.16	ENSMUST00000052120.14	3432	27	4974	8568	4974	-8568	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGGATTTTGAGTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	100064749	100054063	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639
ONT_simulated_read_10018532	chr11	-	634	1	ISM	ENSMUSG00000038150.8	ENSMUST00000052919.8	2184	4	4549	930	1296	526	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACGATGGGTAGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	98473645	98473011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_98473000_98473600
ONT_simulated_read_10019456	chr7	-	926	4	ISM	ENSMUSG00000030881.16	ENST00000423813.6	1404	7	2369	97	2271	-97	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	894	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGGCCACTGGGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	105287252	105285234	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025
ONT_simulated_read_10019719	chr8	+	765	7	ISM	ENSMUSG00000003573.16	ENSMUST00000110124.9	2445	10	0	3293	0	-2096	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGGGAGCCCTTCGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	70735648	70743718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70742043_70742152_70742701_70742824_70743656
ONT_simulated_read_10019989	chr15	-	2743	1	NIC	ENSMUSG00000062373.9	novel	3747	7	NA	NA	38519	0	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGGCTTCTGTATCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	58656860	58654117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_58654100_58656900
ONT_simulated_read_10021188	chr5	+	1248	10	FSM	ENSMUSG00000039782.16	ENST00000345451.8	3093	10	1481	364	1481	-364	multi-exon	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATTACTGTGAGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	43392392	43443169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_43392432_43394649_43394932_43401928_43402020_43419076_43419128_43434773_43434945_43435946_43436037_43438452_43438572_43438713_43438829_43441279_43441462_43443061
ONT_simulated_read_10023986	chr2	-	531	1	Intergenic	novelGene_1	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTTTTCAAATAATTC	NA	NA	NA	NA	NA	NA	NA	NA	176875776	176875245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Intergenic_chr2_-_176875200_176875800
ONT_simulated_read_10024462	chr9	-	1108	11	ISM	ENSMUSG00000032422.19	ENST00000682682.1	2799	28	44336	-14	28545	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTAGGTATTACGGCC	NA	NA	NA	NA	NA	NA	NA	NA	88276527	88258819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419
ONT_simulated_read_10026290	chr2	+	1571	7	ISM	ENSMUSG00000038963.16	ENSMUST00000038259.13	3010	12	0	2740	0	-2740	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCTGGGATCATCAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	180098037	180113920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_180098167_180105733_180106622_180107389_180107481_180108850_180108973_180109359_180109472_180112896_180113052_180113846
ONT_simulated_read_10027268	chr3	-	309	1	Genic_Genomic	ENSMUSG00000090120.2	novel	NA	NA	NA	NA	24349	4	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGCCTGGCTCCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	65232501	65232192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr3_-_65232200_65232500
ONT_simulated_read_10027684	chr1	-	147	2	ISM	ENSMUSG00000026701.16	ENSMUST00000071718.12	2387	5	98	7255	45	-5769	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAGAACTTGGCAGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	161078691	161074936	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_161074984_161078591
ONT_simulated_read_10030508	chr4	+	404	1	FSM	ENSMUSG00000094344.2	ENSMUST00000180255.2	345	1	0	-59	0	59	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAATGTAAATTCT	NA	NA	NA	NA	NA	NA	NA	NA	32964887	32965291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_32964900_32965300
ONT_simulated_read_10031156	chr2	-	1803	16	ISM	ENSMUSG00000061136.17	ENSMUST00000209364.3	3251	26	37660	-71	37145	71	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATAACACTGGGTTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	53044054	53029118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975
ONT_simulated_read_10031687	chr2	-	747	6	ISM	ENSMUSG00000026853.16	ENST00000681325.1	1710	11	5042	2769	5042	-2689	internal_fragment	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATGCTGACGTTCCATCA	NA	NA	NA	NA	NA	NA	NA	NA	30298217	30295278	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_30295301_30295396_30295517_30296379_30296481_30296967_30297147_30297717_30297893_30298067
ONT_simulated_read_1003326	chr19	-	2167	3	ISM	ENSMUSG00000118125.2	ENSMUST00000160852.8	2532	5	387	176	289	-176	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGCTGGCTCAGCGGCA	NA	NA	NA	NA	NA	NA	NA	NA	5781354	5778291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5778897_5779264_5780741_5781268
ONT_simulated_read_10034013	chr8	-	134	1	ISM	ENSMUSG00000031703.9	ENSMUST00000034140.9	3306	18	122009	1201	122009	-1201	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTATAAATTATGCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	86445541	86445407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_86445400_86445500
ONT_simulated_read_10035101	chr14	-	1771	15	ISM	ENSMUSG00000068015.9	ENSMUST00000228252.2	3125	19	128265	464	-13553	-464	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTCTTTTTTTTGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	75057051	74994076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_74994584_75013020_75013099_75022930_75023069_75023720_75023831_75032736_75032810_75033477_75033532_75041660_75041698_75041800_75041891_75042908_75042993_75044913_75044982_75049039_75049156_75051045_75051152_75054508_75054573_75055931_75056060_75056933
ONT_simulated_read_10036652	chr5	-	1009	1	ISM	ENSMUSG00000004815.13	ENSMUST00000053913.13	4938	23	12029	1081	12029	-1081	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCCATGCACCCAAGAATT	NA	NA	NA	NA	NA	NA	NA	NA	108796648	108795639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_108795600_108796600
ONT_simulated_read_10037032	chr15	-	1617	9	ISM	ENSMUSG00000037458.16	ENST00000347770.8	2856	13	18851	343	18821	-343	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGAAGACCAGTGTGACTT	NA	NA	NA	NA	NA	NA	NA	NA	38500686	38490203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541
ONT_simulated_read_1003895	chr19	+	790	3	ISM	ENSMUSG00000024772.10	ENSMUST00000025684.4	3353	5	200	5645	200	-5645	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGGTGGTCAGAGTCTACA	NA	NA	NA	NA	NA	NA	NA	NA	6326954	6344481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_6327409_6331247_6331346_6344243
ONT_simulated_read_10040338	chr5	-	678	3	ISM	ENSMUSG00000057541.15	ENSMUST00000131992.8	3645	16	36031	846	36031	-846	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTAGATGTTTGTGATG	NA	NA	NA	NA	NA	NA	NA	NA	23948525	23946499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_23946975_23947341_23947434_23948414
ONT_simulated_read_10041397	chr8	-	437	1	FSM	ENSMUSG00000110620.2	ENSMUST00000212988.2	437	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATCCAAATGTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	116698810	116698373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_116698400_116698800
ONT_simulated_read_10041632	chr14	-	1165	9	ISM	ENSMUSG00000033487.15	ENST00000398316.7	5732	24	38297	18375	38297	-18375	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCCTTTCAGCCATACAAT	NA	NA	NA	NA	NA	NA	NA	NA	72802158	72793765	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045
ONT_simulated_read_10044013	chr13	-	393	1	FSM	ENSMUSG00000081277.2	ENSMUST00000119271.2	473	1	0	80	0	-80	mono-exon	FALSE	NA	NA	NA	NA	NA	1203	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGCTTGAGGAGTGGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	111498209	111497816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_111497800_111498200
ONT_simulated_read_10044634	chr2	-	293	1	FSM	ENSMUSG00000083879.5	ENSMUST00000121500.2	807	1	0	514	0	-514	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAGCTGGAAGTCGCAA	NA	NA	NA	NA	NA	NA	NA	NA	134605550	134605257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_134605300_134605600
ONT_simulated_read_10047448	chr8	+	1362	6	ISM	ENSMUSG00000031565.19	ENST00000341462.9	2966	17	61	12810	61	-12810	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAAGGCTAAGTGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	26008910	26050859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_26009446_26022265_26022445_26045523_26045791_26047746_26047831_26048086_26048260_26050735
ONT_simulated_read_10048531	chr11	-	450	1	ISM	ENSMUSG00000000202.10	ENSMUST00000000206.4	1717	3	3386	845	3386	-845	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCGCGCCACGGCCCGGCG	NA	NA	NA	NA	NA	NA	NA	NA	114683337	114682887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_114682900_114683300
ONT_simulated_read_10051164	chr10	-	317	1	ISM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	15268	1172	15268	-1172	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGGGAAAAATGGACATTG	NA	NA	NA	NA	NA	NA	NA	NA	57393358	57393041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_57393000_57393400
ONT_simulated_read_10054796	chr19	-	1609	1	ISM	ENSMUSG00000024855.11	ENSMUST00000025786.9	4869	24	138097	256	138097	-256	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCTTTGCTGGTCAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	5185050	5183441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5183400_5185000
ONT_simulated_read_10055467	chr1	-	2115	1	NIC	ENSMUSG00000030768.13	novel	4594	6	NA	NA	45991	-1472	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGCTGGAGTCCGTCACCA	NA	NA	NA	NA	NA	NA	NA	NA	182871435	182869320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_182869300_182871400
ONT_simulated_read_10056617	chr12	-	879	1	NIC	ENSMUSG00000056459.15	novel	451	3	NA	NA	5874	-364	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATATAACCGTTGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	76396961	76396082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_76396100_76397000
ONT_simulated_read_10058062	chr10	+	4914	2	ISM	ENSMUSG00000038587.11	ENSMUST00000216139.3	5950	3	0	1574	0	-1574	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGGAGCCAAAGGGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	4296807	4307896	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_4296967_4303141
ONT_simulated_read_10058270	chr9	+	289	1	FSM	ENSMUSG00000102573.2	ENSMUST00000192735.2	3502	1	1890	1323	1890	-1323	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGGGACAGTACTTCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	72600720	72601009	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_72600700_72601000
ONT_simulated_read_10059637	chr2	+	2276	9	ISM	ENSMUSG00000027397.15	ENSMUST00000110315.2	3219	10	0	1670	0	-1670	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCACAACACATTGCAAAGTA	NA	NA	NA	NA	NA	NA	NA	NA	129041229	129051859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791
ONT_simulated_read_10061666	chr13	-	1294	11	ISM	ENSMUSG00000021546.19	ENSMUST00000177019.8	2626	15	4668	1020	259	-309	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTAATGTTTTAGTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	58545610	58540072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566
ONT_simulated_read_10062932	chr9	-	1341	10	ISM	ENSMUSG00000032527.14	ENSMUST00000149322.8	2188	14	11651	369	11635	286	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGGGTATGATTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	100905279	100864453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100905188
ONT_simulated_read_10065923	chr8	-	5807	1	NIC	ENSMUSG00000037234.18	novel	12836	22	NA	NA	87193	-4804	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCATGTCATGGGATGTGT	NA	NA	NA	NA	NA	NA	NA	NA	26522059	26516252	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_26516300_26522100
ONT_simulated_read_1006834	chr7	+	726	6	ISM	ENSMUSG00000030890.17	ENST00000537806.5	1803	12	3873	1070	3413	-1070	internal_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCTTTGGACATGGCAA	NA	NA	NA	NA	NA	NA	NA	NA	105389717	105391024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105389816_105389977_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993
ONT_simulated_read_10071033	chr2	-	382	1	ISM	ENSMUSG00000038369.15	ENST00000374796.6	7174	16	77505	184	49576	-161	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGCAAAACGCAATCTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	155233127	155232745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155232700_155233100
ONT_simulated_read_10072104	chr1	-	1300	10	ISM	ENSMUSG00000054387.14	ENST00000367182.8	1595	11	6483	173	-4	-173	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAGCCGTGTAGCTTATG	NA	NA	NA	NA	NA	NA	NA	NA	132946596	132919567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940450_132946514
ONT_simulated_read_10072385	chr14	-	1102	3	ISM	ENSMUSG00000002320.16	ENSMUST00000002391.15	2382	5	394	4384	305	-4384	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAATTGGAGGCGAGCGTT	NA	NA	NA	NA	NA	NA	NA	NA	55880403	55877900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55878028_55878423_55879046_55880050
ONT_simulated_read_10072843	chr10	-	1452	1	ISM	ENSMUSG00000075000.12	ENST00000435510.6	1613	3	17045	5	17040	0	mono-exon	FALSE	NA	NA	NA	NA	NA	429	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTTGAGTATGACTTG	NA	NA	NA	NA	NA	NA	NA	NA	67103919	67102467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_67102500_67103900
ONT_simulated_read_10075145	chr11	-	601	1	ISM	ENSMUSG00000001891.17	ENSMUST00000102875.11	2683	10	48359	380	32291	155	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTGACACTAGAACTAAAC	NA	NA	NA	NA	NA	NA	NA	NA	21272118	21271517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_21271500_21272100
ONT_simulated_read_10076523	chr1	-	1700	12	ISM	ENSMUSG00000053024.15	ENST00000640428.1	3561	23	9079	8509	9079	-8509	internal_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTCACCTGGACCCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	132461544	132450747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_132450849_132451095_132451224_132451330_132451482_132453044_132453175_132453555_132453693_132454025_132454202_132455432_132455533_132455813_132456024_132456349_132456446_132456647_132456824_132456924_132457070_132461394
ONT_simulated_read_1007735	chr11	-	614	1	ISM	ENSMUSG00000038208.14	ENSMUST00000090827.12	2419	8	10422	778	1690	169	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGGACACATTGACACATA	NA	NA	NA	NA	NA	NA	NA	NA	98280894	98280280	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_98280300_98280900
ONT_simulated_read_1007750	chrX	-	4299	8	ISM	ENSMUSG00000004317.15	ENST00000307367.2	3103	12	15446	-1912	15446	1912	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATCCTTGCAGCTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	7037476	7023487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_7026059_7027474_7027692_7027836_7028236_7029568_7029756_7031818_7032362_7032594_7032676_7036547_7036755_7037382
ONT_simulated_read_10078005	chr17	-	1107	7	ISM	ENSMUSG00000024426.18	ENSMUST00000141662.8	2034	11	1084	591	1084	-556	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTCTGCTTCAGAGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	36219853	36211299	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_36211765_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744
ONT_simulated_read_10078625	chr9	-	262	2	ISM	ENSMUSG00000074476.7	ENSMUST00000216057.2	627	4	2944	0	2923	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCGTTCATTGATTTAT	NA	NA	NA	NA	NA	NA	NA	NA	21668655	21667399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21667592_21668585
ONT_simulated_read_10079241	chr9	-	1902	7	NIC	ENSMUSG00000053110.14	novel	4171	9	NA	NA	2613	486	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTATGGTAGTGTGATAGC	NA	NA	NA	NA	NA	NA	NA	NA	8001704	7933668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_7934734_7936515_7936629_7938408_7938540_7950492_7950541_7952953_7953136_7973796_7973913_8001457
ONT_simulated_read_10079442	chr11	-	489	4	ISM	ENSMUSG00000017561.17	ENSMUST00000103233.10	2230	7	16559	11487	16559	-11487	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTCCGCAAATGTACTG	NA	NA	NA	NA	NA	NA	NA	NA	79955205	79948805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_79948841_79950025_79950204_79950923_79951012_79955017
ONT_simulated_read_10079843	chr3	+	393	3	ISM	ENSMUSG00000034349.15	ENSMUST00000107803.7	3983	24	19203	7052	19203	-7052	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTGAAAAATGAGGAAATCC	NA	NA	NA	NA	NA	NA	NA	NA	68931526	68934899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_68931684_68933156_68933319_68934825
ONT_simulated_read_10080792	chr15	-	311	1	ISM	ENSMUSG00000022425.17	ENSMUST00000041591.16	3095	25	80466	325	33890	1	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATCTGACATATTAAGC	NA	NA	NA	NA	NA	NA	NA	NA	54702932	54702621	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_54702600_54702900
ONT_simulated_read_1008143	chrX	+	1164	5	ISM	ENSMUSG00000000266.12	ENST00000262843.11	3817	10	364	26567	0	-25639	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCCGCCAGTGTCTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	139565820	139639105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_139566028_139578744_139579461_139593815_139593912_139637183_139637292_139639068
ONT_simulated_read_10093036	chr5	+	1057	8	ISM	ENSMUSG00000029368.11	ENST00000503124.5	1406	10	-14	1846	0	-1846	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTAGTTTTATCAGCTA	NA	NA	NA	NA	NA	NA	NA	NA	90608755	90618697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_90608873_90610558_90610692_90612711_90612845_90613732_90613831_90615202_90615333_90616339_90616555_90617360_90617494_90618599
ONT_simulated_read_10093867	chr1	+	304	4	ISM	ENSMUSG00000026280.18	ENSMUST00000027502.16	4173	13	29892	2874	29892	-2874	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGAAATCTTATCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	93712518	93715458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_93712621_93713631_93713689_93714232_93714327_93715407
ONT_simulated_read_10095199	chr5	-	649	4	ISM	ENSMUSG00000029136.10	ENSMUST00000031018.10	1042	8	37571	0	37571	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGTGTGGCTACTCATC	NA	NA	NA	NA	NA	NA	NA	NA	31817400	31781782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_31782001_31805064_31805254_31809152_31809245_31817250
ONT_simulated_read_10095223	chr17	+	623	5	ISM	ENSMUSG00000024101.16	ENSMUST00000116556.4	1831	11	4055	2352	43	-2040	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCATTGCCCCGTCTGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	66422694	66424090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967
ONT_simulated_read_10097632	chr11	-	1159	1	ISM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	13709	120	13709	-120	mono-exon	FALSE	NA	NA	NA	NA	NA	1050	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTATGCCTTCAAATAGT	NA	NA	NA	NA	NA	NA	NA	NA	51877602	51876443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_51876400_51877600
ONT_simulated_read_10100469	chr8	+	516	4	ISM	ENSMUSG00000019428.17	ENSMUST00000119698.8	1799	9	163	4109	163	-3944	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGAGACAGCCATGGTTACC	NA	NA	NA	NA	NA	NA	NA	NA	70980658	70983868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70980686_70982040_70982326_70983589_70983760_70983834
ONT_simulated_read_10101279	chr8	+	407	3	ISM	ENSMUSG00000054400.17	ENSMUST00000034342.13	667	4	83	1878	0	-1874	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTAGAAGTCTTCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	104977575	104988201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_104977728_104983916_104984076_104988105
ONT_simulated_read_10103826	chr17	+	873	2	ISM	ENSMUSG00000014763.9	ENSMUST00000055352.8	4420	11	0	31180	0	-31180	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCTCCAGCACAACTGTC	NA	NA	NA	NA	NA	NA	NA	NA	15616463	15622520	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_15616823_15622006
ONT_simulated_read_1010440	chr7	-	289	4	ISM	ENSMUSG00000030689.16	ENST00000567705.5	827	7	528	4585	192	-4585	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACCCTGATGTGGGACTAT	NA	NA	NA	NA	NA	NA	NA	NA	126460443	126456397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126456464_126456847_126456960_126457045_126457125_126460411
ONT_simulated_read_1010689	chr15	-	652	8	ISM	ENSMUSG00000023044.3	ENSMUST00000023805.3	2279	15	2620	1582	2537	-1262	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGCCTTCGGGGGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	102094873	102087015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828
ONT_simulated_read_10108015	chr3	-	174	1	ISM	ENSMUSG00000001018.16	ENSMUST00000149884.2	1928	4	1469	1357	1469	-1357	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCACTATGTACTCATTC	NA	NA	NA	NA	NA	NA	NA	NA	90396871	90396697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_90396700_90396900
ONT_simulated_read_10109689	chr6	+	773	4	ISM	ENSMUSG00000031865.17	ENSMUST00000113907.2	4205	26	0	10510	0	-10204	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAAACGCTCAGAAGACAA	NA	NA	NA	NA	NA	NA	NA	NA	83162927	83166589	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_83163428_83164745_83164767_83166058_83166251_83166529
ONT_simulated_read_10110292	chr14	-	724	1	ISM	ENSMUSG00000033083.17	ENSMUST00000161991.8	6483	19	164263	1687	62928	-246	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGTGTCTATCTATAAGG	NA	NA	NA	NA	NA	NA	NA	NA	101682206	101681482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_101681500_101682200
ONT_simulated_read_10111950	chr19	-	1062	1	NIC	ENSMUSG00000024901.16	novel	4110	7	NA	NA	9045	2	mono-exon	FALSE	NA	NA	NA	NA	NA	1705	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAACAAGTGGGCAGGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	4982896	4981834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_4981800_4982900
ONT_simulated_read_10114212	chr12	-	741	1	ISM	ENSMUSG00000021071.18	ENST00000338969.9	2638	12	19	98469	19	-80579	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGCGTCCTGGAAGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	70394242	70393501	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_70393500_70394200
ONT_simulated_read_10116387	chr9	-	619	4	ISM	ENSMUSG00000037742.15	ENST00000610520.5	1735	8	1955	379	1955	-368	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTGGGTGTCATCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	78386998	78386106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905
ONT_simulated_read_10117545	chr2	+	1476	6	ISM	ENSMUSG00000037761.17	ENSMUST00000045644.9	2402	9	0	3859	0	-3859	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGTGATTTCGAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	158466807	158477272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_158467437_158468246_158468477_158469976_158470147_158473382_158473601_158474191_158474375_158477226
ONT_simulated_read_10117675	chr19	+	923	8	ISM	ENSMUSG00000024909.16	ENSMUST00000166303.9	2634	11	361	2438	0	-1643	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGAGCCAGGCCGATTCTC	NA	NA	NA	NA	NA	NA	NA	NA	5524342	5530107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_5524482_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057
ONT_simulated_read_10119141	chr16	-	553	6	ISM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	1706	6686	1706	-6686	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCTAAGGATGTACACCTCA	NA	NA	NA	NA	NA	NA	NA	NA	38368914	38352184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799
ONT_simulated_read_10119376	chr2	+	418	4	ISM	ENSMUSG00000054582.5	ENST00000217073.7	1730	13	5659	14341	5659	-14341	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCTATGTGGGTCGGGC	NA	NA	NA	NA	NA	NA	NA	NA	163873090	163877203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_163873235_163874099_163874240_163874407_163874503_163877164
ONT_simulated_read_10129712	chr2	+	345	4	ISM	ENSMUSG00000068882.14	ENSMUST00000090852.11	2001	12	61	5240	61	-4026	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAACTCATGGAAGTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	69691966	69696890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831
ONT_simulated_read_10130397	chr19	-	1529	1	ISM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	37981	1184	37777	0	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTTTCCCCACTTAGT	NA	NA	NA	NA	NA	NA	NA	NA	32651750	32650221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_32650200_32651800
ONT_simulated_read_10131259	chr11	-	1392	8	ISM	ENSMUSG00000018068.14	ENSMUST00000108039.8	4369	24	31405	489	31405	-489	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACTGAATGAGAATAGTG	NA	NA	NA	NA	NA	NA	NA	NA	86115967	86103402	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768
ONT_simulated_read_10132141	chr19	-	445	3	ISM	ENSMUSG00000043531.17	ENST00000369698.5	2643	19	99540	180	99540	-180	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCATCCTTCATGACCAC	NA	NA	NA	NA	NA	NA	NA	NA	50141576	50139590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_50139790_50141197_50141359_50141491
ONT_simulated_read_1013247	chr8	+	737	6	ISM	ENSMUSG00000001909.17	ENSMUST00000109767.9	2138	17	42	4548	25	-4546	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAAGGCACCTGAGCGAT	NA	NA	NA	NA	NA	NA	NA	NA	85415917	85421868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_85415979_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850
ONT_simulated_read_10134004	chr6	+	569	7	ISM	ENSMUSG00000030269.15	ENST00000420925.5	1410	9	56	11689	54	-51	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCCAACTCGGGATGCAG	NA	NA	NA	NA	NA	NA	NA	NA	113214857	113246470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_113215083_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461
ONT_simulated_read_1013458	chr15	+	861	4	ISM	ENSMUSG00000022428.9	ENSMUST00000023064.9	1147	5	2170	193	2170	-193	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTGCCCAGTAAGTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	79545569	79551668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_79545726_79549846_79549953_79550031_79550151_79551188
ONT_simulated_read_10136925	chr6	+	2923	5	ISM	ENSMUSG00000029767.17	ENSMUST00000172974.8	3063	6	8402	0	8352	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTATGTGTCTTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	29356469	29376671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29374397
ONT_simulated_read_10137228	chr5	-	251	3	ISM	ENSMUSG00000029422.16	ENSMUST00000111515.8	4223	8	5767	7351	5726	-7351	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTCATCACGGGGCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	123881708	123878782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_123878948_123880841_123880920_123881700
ONT_simulated_read_10137568	chr1	+	1396	6	NNC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	17	-237	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGACACTTGTGGGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	63216305	63219408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_+_63216451_63216912_63217036_63217581_63217725_63217990_63218058_63218406_63218533_63218616
ONT_simulated_read_10137893	chr8	-	815	6	ISM	ENSMUSG00000036180.16	ENSMUST00000116463.4	3363	13	56197	5976	56197	-5975	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCCAAGCCCCCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	70370724	70367281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595
ONT_simulated_read_10140833	chr5	+	964	8	ISM	ENSMUSG00000029368.11	ENST00000503124.5	1406	10	1789	656	1789	-656	internal_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACCTCAGGTGTCAACCC	NA	NA	NA	NA	NA	NA	NA	NA	90610558	90619887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_90610692_90612711_90612845_90613732_90613831_90615202_90615333_90616339_90616555_90617360_90617494_90618599_90618698_90619863
ONT_simulated_read_10144078	chr7	+	779	6	ISM	ENSMUSG00000030890.17	ENST00000537806.5	1803	12	3550	1249	3090	-1249	internal_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACCCAACCCTCATCACA	NA	NA	NA	NA	NA	NA	NA	NA	105389394	105390845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105389550_105389719_105389816_105389977_105390251_105390354_105390441_105390580_105390691_105390786
ONT_simulated_read_10144590	chr2	-	1012	1	ISM	ENSMUSG00000025816.16	ENSMUST00000102981.10	2448	12	23434	0	23321	0	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGTGTTCTCTAAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	5876809	5875797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_5875800_5876800
ONT_simulated_read_10146638	chr13	+	584	7	FSM	ENSMUSG00000015671.12	ENST00000677581.1	791	7	5	202	0	-198	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGGGATCTGCAATGAGG	NA	NA	NA	NA	NA	NA	NA	NA	14787824	14799971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_14787901_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ONT_simulated_read_1014820	chr18	+	1669	10	ISM	ENSMUSG00000024590.9	ENSMUST00000025486.9	2843	11	20628	472	20628	-472	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTTAAGGGGGGACAAGG	NA	NA	NA	NA	NA	NA	NA	NA	56861512	56886024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_56861630_56862358_56862485_56864041_56864213_56866283_56866410_56872892_56873114_56873758_56873985_56876282_56876388_56881048_56881169_56882770_56882882_56885678
ONT_simulated_read_10151991	chr2	-	258	2	FSM	ENSMUSG00000027404.17	ENST00000461548.1	257	2	0	-1	0	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTGACCCTCTTCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	130019087	130018567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_130018673_130018934
ONT_simulated_read_10157235	chr9	+	831	7	ISM	ENSMUSG00000003299.11	ENSMUST00000003386.7	1288	9	646	0	646	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGGTCACTGCTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	20914679	20920135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919789
ONT_simulated_read_10157746	chr7	+	802	3	ISM	ENSMUSG00000025495.16	ENSMUST00000026568.10	3624	12	23337	1737	23337	-1737	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGAGACCCTGTGGTCC	NA	NA	NA	NA	NA	NA	NA	NA	140734535	140735782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_140734616_140734723_140734910_140735246
ONT_simulated_read_10158841	chr3	-	305	2	ISM	ENSMUSG00000037652.16	ENST00000481639.1	501	4	7535	0	7525	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTCAGTTAATGAGTGCC	NA	NA	NA	NA	NA	NA	NA	NA	31016023	31012077	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_31012236_31015876
ONT_simulated_read_10161102	chr11	+	382	4	ISM	ENSMUSG00000020610.18	ENSMUST00000092500.11	2816	9	36	9232	6	-1129	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTTCCAGCCACGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	109316807	109319742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_109316857_109317311_109317402_109317795_109317924_109319627
ONT_simulated_read_10162911	chr13	-	1934	3	ISM	ENSMUSG00000097333.8	ENSMUST00000181767.8	2656	4	4904	575	4873	-575	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGGAAAGTTTTTTAACT	NA	NA	NA	NA	NA	NA	NA	NA	67669392	67664474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_67666232_67668744_67668841_67669311
ONT_simulated_read_10164120	chr13	-	286	1	ISM	ENSMUSG00000021681.9	ENSMUST00000022189.9	3249	14	23654	730	23654	-730	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGGAGGAACTCTTAAGA	NA	NA	NA	NA	NA	NA	NA	NA	95488206	95487920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_95487900_95488200
ONT_simulated_read_10165109	chr15	-	110	1	ISM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	34500	1765	22859	16	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGAAGAACAGCTTAGCT	NA	NA	NA	NA	NA	NA	NA	NA	81249744	81249634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81249600_81249700
ONT_simulated_read_10165301	chr14	+	1158	10	ISM	ENSMUSG00000021832.9	ENSMUST00000022380.9	2234	14	4842	781	4842	-781	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTTTTCATATTTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	45572086	45586381	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
ONT_simulated_read_10168758	chr14	+	1141	6	ISM	ENSMUSG00000021771.15	ENST00000313132.8	1256	9	5431	-114	5287	114	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCATTAGAATTACTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	21887801	21895701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
ONT_simulated_read_10170992	chr12	-	588	1	ISM	ENSMUSG00000112765.2	ENSMUST00000218818.2	1082	3	6845	282	6845	268	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACATCAGAAGTTGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	79964662	79964074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_79964100_79964700
ONT_simulated_read_10175723	chr17	-	638	1	ISM	ENSMUSG00000036026.16	ENSMUST00000113523.9	3284	24	25280	171	25280	-171	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGGAGGGGTGCACAGT	NA	NA	NA	NA	NA	NA	NA	NA	45971905	45971267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_45971300_45971900
ONT_simulated_read_10176102	chr1	-	340	4	ISM	ENSMUSG00000026035.16	ENSMUST00000117069.8	1363	7	4511	260	4451	-257	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTACACATTAAGGACATA	NA	NA	NA	NA	NA	NA	NA	NA	58480077	58470412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001
ONT_simulated_read_10177086	chr8	-	1465	10	ISM	ENSMUSG00000002885.15	ENSMUST00000166939.8	2980	18	7770	1553	7613	-1440	internal_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTCAAAATGGATGGCTA	NA	NA	NA	NA	NA	NA	NA	NA	84460185	84451432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84460042
ONT_simulated_read_10178330	chr9	-	3725	1	ISM	ENSMUSG00000032440.14	ENSMUST00000061101.12	8092	8	84732	2516	84732	2120	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGGAGAGGCAGAGATAG	NA	NA	NA	NA	NA	NA	NA	NA	115919601	115915876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_115915900_115919600
ONT_simulated_read_10179332	chr9	-	270	2	ISM	ENSMUSG00000032786.17	ENSMUST00000074082.13	2129	11	-133	12987	-133	-12987	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGCCTTTCTGCAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	106125188	106124112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_106124178_106124983
ONT_simulated_read_10180396	chr15	+	785	7	ISM	ENSMUSG00000033819.17	ENSMUST00000135388.3	2827	12	20044	1194	20044	-1194	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCTCCTGCTGTGGTCA	NA	NA	NA	NA	NA	NA	NA	NA	76575890	76577925	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76575968_76576054_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794
ONT_simulated_read_10181998	chr3	-	197	2	ISM	ENSMUSG00000042672.16	ENST00000423025.6	1952	14	6425	7316	6425	-7316	internal_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTACCGCTGGTTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	89265198	89264899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_89264924_89265025
ONT_simulated_read_10182209	chr2	+	959	6	ISM	ENSMUSG00000005089.16	ENST00000644868.1	1864	11	19966	65	19963	-65	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	138	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATAAACTCCCCAGCGTA	NA	NA	NA	NA	NA	NA	NA	NA	102586251	102611902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_102586486_102591359_102591555_102597277_102597413_102607771_102608001_102611061_102611133_102611807
ONT_simulated_read_1018252	chr7	-	2394	9	ISM	ENSMUSG00000030849.19	ENST00000684153.1	4203	16	80812	322	24336	-297	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCATCATTCGGTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	129787083	129764538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_129765946_129769432_129769539_129771468_129771607_129773341_129773413_129774546_129774670_129779404_129779596_129782094_129782206_129784370_129784493_129786958
ONT_simulated_read_10182794	chr9	-	812	6	ISM	ENSMUSG00000032096.17	ENST00000392859.7	1696	9	10558	325	10558	-325	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	315	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCCCGTCAGGTTTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	44668571	44655284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416
ONT_simulated_read_10183683	chr17	-	1326	9	ISM	ENSMUSG00000025728.17	ENSMUST00000026823.16	3173	11	6981	847	6827	-816	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCTGTGTTTTCTGACA	NA	NA	NA	NA	NA	NA	NA	NA	26154041	26146241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976
ONT_simulated_read_10189403	chr19	-	497	3	ISM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	984	0	984	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGGCTTTTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	45737046	45736172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_45736491_45736602_45736720_45736984
ONT_simulated_read_10189732	chr15	-	933	8	ISM	ENSMUSG00000022475.20	ENSMUST00000121514.8	3767	23	15244	877	15244	-856	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTGAGAAGACCATGGG	NA	NA	NA	NA	NA	NA	NA	NA	97697500	97691445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_97691624_97691810_97691947_97693627_97693713_97693978_97694113_97694713_97694833_97695821_97695920_97696104_97696225_97697437
ONT_simulated_read_10190122	chr18	-	768	9	ISM	ENSMUSG00000006740.15	ENSMUST00000025083.14	6032	26	6620	22613	6620	-22613	internal_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATATGCTGCTCTCCAT	NA	NA	NA	NA	NA	NA	NA	NA	6234903	6223614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814
ONT_simulated_read_10191066	chr14	+	450	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	0	-114	0	114	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGGGCAATGCCACCCACA	NA	NA	NA	NA	NA	NA	NA	NA	13669437	13669887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_13669400_13669900
ONT_simulated_read_10191530	chr18	+	920	10	ISM	ENSMUSG00000024271.9	ENSMUST00000234266.2	3466	22	24	20409	22	-13784	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGACTGCTGTCTGCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	24737041	24752155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134
ONT_simulated_read_10192669	chr4	-	1567	1	ISM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	25234	1470	25234	-1470	mono-exon	FALSE	NA	NA	NA	NA	NA	274	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTTTTGGTGTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	129203929	129202362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129202400_129203900
ONT_simulated_read_10193014	chr14	+	389	2	ISM	ENSMUSG00000021846.10	ENSMUST00000226513.2	1320	3	15	11730	15	-11730	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACAATCCACATGGTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	48358393	48405745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_48358691_48405653
ONT_simulated_read_10194290	chr15	-	1140	4	ISM	ENSMUSG00000022305.14	ENSMUST00000022916.13	4109	7	39192	7568	39192	-7554	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATCAATTGTACCATGTG	NA	NA	NA	NA	NA	NA	NA	NA	39767992	39741552	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_39742296_39743515_39743719_39748401_39748538_39767934
ONT_simulated_read_1019448	chr7	-	1561	1	NIC	ENSMUSG00000039405.8	novel	3228	2	NA	NA	6715	-208	mono-exon	FALSE	NA	NA	NA	NA	NA	229	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGGTTATTATGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	89160079	89158518	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_89158500_89160100
ONT_simulated_read_10195116	chr7	-	889	7	ISM	ENSMUSG00000030549.7	ENST00000268122.9	1456	10	13639	3811	13639	-3811	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGGACAAGCTGCAGATGA	NA	NA	NA	NA	NA	NA	NA	NA	79253638	79248339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_79248363_79248717_79248843_79249104_79249242_79249426_79249565_79250241_79250409_79251334_79251483_79253487
ONT_simulated_read_10195262	chr7	-	482	1	ISM	ENSMUSG00000060376.8	ENSMUST00000071329.8	1899	9	28554	0	28554	0	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTCCTTCGTCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	25329852	25329370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_25329400_25329900
ONT_simulated_read_10197414	chr8	-	1451	1	Genic_Genomic	ENSMUSG00000002393.15	novel	NA	NA	NA	NA	7565	1182	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGGGGACAAGAGTTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	71827039	71825588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr8_-_71825600_71827000
ONT_simulated_read_10204802	chr2	-	783	4	ISM	ENSMUSG00000015087.15	ENSMUST00000058137.9	3230	15	22984	646	22984	-646	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGTCTGGCCCACTCTA	NA	NA	NA	NA	NA	NA	NA	NA	25475549	25473675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25474001_25474114_25474174_25474787_25474957_25475319
ONT_simulated_read_10205754	chr3	-	273	1	NIC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	30249	-308	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTTGGGATCATGTT	NA	NA	NA	NA	NA	NA	NA	NA	157600465	157600192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_157600200_157600500
ONT_simulated_read_10205940	chr19	-	974	7	ISM	ENSMUSG00000034321.15	ENSMUST00000075280.12	1018	8	131	0	0	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTGGAAAAAATTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	41921604	41912004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921487
ONT_simulated_read_1020647	chr11	-	314	1	ISM	ENSMUSG00000001441.14	ENSMUST00000001480.14	4215	23	73392	1089	60430	-1089	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATAAAATAA	NA	NA	NA	NA	NA	NA	NA	NA	97098072	97097758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97097800_97098100
ONT_simulated_read_10207015	chr7	-	208	1	ISM	ENSMUSG00000048170.15	ENSMUST00000057557.14	4237	16	42715	1132	42706	194	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCTGGCTTCTCATACA	NA	NA	NA	NA	NA	NA	NA	NA	128299504	128299296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_128299300_128299500
ONT_simulated_read_10208932	chr5	-	682	1	ISM	ENSMUSG00000084992.2	ENSMUST00000156331.2	865	3	1744	0	1744	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTAAGAAGCAAAACTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	116165151	116164469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_116164500_116165200
ONT_simulated_read_10210116	chr7	+	757	3	ISM	ENSMUSG00000030876.8	ENSMUST00000033163.8	1823	5	0	24714	0	-24714	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATCAGTTTCAGAGACTG	NA	NA	NA	NA	NA	NA	NA	NA	120633667	120651344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_120634199_120647060_120647252_120651309
ONT_simulated_read_10211938	chr1	+	603	4	FSM	ENSMUSG00000038949.9	ENST00000366511.1	644	4	42	-1	42	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGTATCATGAGCAATTG	NA	NA	NA	NA	NA	NA	NA	NA	179374073	179432116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_179374182_179406902_179407334_179429266_179429298_179432083
ONT_simulated_read_102124	chr17	+	785	6	FSM	ENSMUSG00000023826.17	ENST00000366898.6	865	6	-1	81	0	-81	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCACTTGTATTGTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	11286011	11854250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_11286180_11456348_11456590_11522476_11522599_11653436_11653521_11711565_11711682_11854196
ONT_simulated_read_1021246	chr9	+	479	5	ISM	ENSMUSG00000032604.17	ENSMUST00000134939.9	2374	23	6485	79	6485	-79	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACCTCATCCTGGAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	108391743	108393061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
ONT_simulated_read_10215475	chr11	+	549	5	ISM	ENSMUSG00000034708.13	ENST00000639447.1	796	6	164	179	164	-179	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACACCTGCAATGTGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	102324927	102326890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326849
ONT_simulated_read_10218433	chr18	-	240	1	ISM	ENSMUSG00000118134.2	ENSMUST00000237968.2	580	4	23671	0	23671	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTTGATGTCTGCTACA	NA	NA	NA	NA	NA	NA	NA	NA	67909342	67909102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_67909100_67909300
ONT_simulated_read_10221533	chr6	+	169	3	ISM	ENSMUSG00000030208.16	ENST00000544053.5	691	4	114	1193	114	-1116	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCATCTTCTCCATCATCT	NA	NA	NA	NA	NA	NA	NA	NA	135340065	135357135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_135340101_135356898_135356996_135357098
ONT_simulated_read_10221758	chr10	+	777	7	ISM	ENSMUSG00000006728.13	ENST00000257904.11	1391	8	673	397	673	-54	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAGCGAATCTCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	126900166	126902817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
ONT_simulated_read_10221847	chr3	+	1947	11	ISM	ENSMUSG00000040389.16	ENST00000361054.7	3999	14	27824	868	27824	-868	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGATGGGTTCATGGTTAT	NA	NA	NA	NA	NA	NA	NA	NA	108526549	108552162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_108526609_108530641_108530766_108531872_108532052_108534518_108534777_108537007_108537084_108540376_108540535_108544306_108544477_108545208_108545380_108545941_108546074_108550377_108550597_108551761
ONT_simulated_read_10224090	chr16	-	270	3	ISM	ENSMUSG00000022972.11	ENSMUST00000023694.11	1430	7	7904	213	7513	-162	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGACATTTTCATGGC	NA	NA	NA	NA	NA	NA	NA	NA	90724098	90722909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_90722971_90723232_90723329_90723985
ONT_simulated_read_1022821	chr15	+	303	3	ISM	ENSMUSG00000022386.13	ENSMUST00000023019.12	1526	11	61	12248	61	-12013	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATATCAAGTTCAGTTGC	NA	NA	NA	NA	NA	NA	NA	NA	85763581	85769345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_85763660_85766874_85767041_85769286
ONT_simulated_read_10228680	chr7	-	468	1	ISM	ENSMUSG00000000605.10	ENSMUST00000000619.8	4607	13	15287	1470	12635	276	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGACAAAGGGGTATTCGC	NA	NA	NA	NA	NA	NA	NA	NA	7287245	7286777	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_7286800_7287200
ONT_simulated_read_10229968	chr8	+	1221	9	ISM	ENSMUSG00000031808.8	ENSMUST00000034267.5	2795	14	0	2571	0	-2568	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGCCGCTACCTGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	72021570	72036781	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_72021668_72021985_72022093_72023364_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761
ONT_simulated_read_10230498	chr10	-	480	4	FSM	ENSMUSG00000035278.10	ENST00000586608.3	467	4	35	-48	-20	48	multi-exon	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTGGACTGACCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	80634028	80632259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_80632357_80632424_80632489_80633606_80633812_80633914
ONT_simulated_read_10230592	chr10	+	367	1	FSM	ENSMUSG00000111875.2	ENSMUST00000214125.2	459	1	0	92	0	-92	mono-exon	FALSE	NA	NA	NA	NA	NA	1296	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGAGTGCTGAGAAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	84144749	84145116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_84144700_84145100
ONT_simulated_read_10232866	chr5	+	657	6	ISM	ENSMUSG00000005514.15	ENSMUST00000122113.8	2606	15	0	4441	0	-4441	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGGCAAGTATGTGGACCA	NA	NA	NA	NA	NA	NA	NA	NA	135718011	135759739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_135718107_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697
ONT_simulated_read_10233820	chr14	-	689	4	ISM	ENSMUSG00000021798.15	ENST00000372056.8	1368	8	16547	0	16547	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	274	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTCCTACCTCTCCAACC	NA	NA	NA	NA	NA	NA	NA	NA	34293879	34283561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_34283839_34288813_34288851_34289354_34289525_34293674
ONT_simulated_read_10235136	chr11	+	735	7	NIC	ENSMUSG00000005950.15	novel	2395	13	NA	NA	-11	-438	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAAGCTGCCTCCCACTG	NA	NA	NA	NA	NA	NA	NA	NA	73051410	73058361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_73051560_73055681_73055833_73056968_73057045_73057130_73057228_73057387_73057469_73057738_73057878_73058319
ONT_simulated_read_10238124	chr5	-	1111	5	ISM	ENSMUSG00000004530.13	ENSMUST00000004646.13	3491	11	60127	1477	60127	-1477	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTCTTTCTTTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	113986692	113981973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587
ONT_simulated_read_10239116	chr9	+	388	4	ISM	ENSMUSG00000019659.9	ENSMUST00000019803.9	834	7	53391	142	53391	-142	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTGGTGTGACCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	110538961	110540532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_110539024_110539194_110539230_110540153_110540231_110540318
ONT_simulated_read_10239988	chr7	-	2603	4	ISM	ENSMUSG00000030980.18	ENSMUST00000106549.9	1467	5	2272	-1361	3	-350	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTAGTCTATCTCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	118452564	118443362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_118445318_118447671_118447798_118449843_118449913_118452111
ONT_simulated_read_10244188	chr6	-	594	1	ISM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	7821	160	7654	-160	mono-exon	FALSE	NA	NA	NA	NA	NA	490	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACCTCTAGACAGCCCCT	NA	NA	NA	NA	NA	NA	NA	NA	128407819	128407225	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_128407200_128407800
ONT_simulated_read_10252822	chr6	-	760	1	ISM	ENSMUSG00000038227.16	ENSMUST00000048680.8	3226	2	2917	594	1651	427	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTTTATGGGGGGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	52201433	52200673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_52200700_52201400
ONT_simulated_read_10255347	chr1	-	1340	9	NIC	ENSMUSG00000054387.14	novel	1914	11	NA	NA	-4	-68	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTGGGGCTTCGTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	132946596	132919462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132936874_132936931_132938802_132938937_132940374_132940453_132946514
ONT_simulated_read_10255698	chr8	-	1119	1	ISM	ENSMUSG00000053226.8	ENSMUST00000065539.6	1585	2	6300	1	6300	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGCGTGCTTCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	85543152	85542033	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85542000_85543200
ONT_simulated_read_10255755	chr1	-	1420	6	ISM	ENSMUSG00000026098.14	ENST00000639501.1	1925	8	14144	188	14144	-188	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAACCAAATGAAGAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	53307087	53236424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53295787_53295952_53306986
ONT_simulated_read_10256297	chr3	-	1260	10	ISM	ENSMUSG00000068921.15	ENSMUST00000173135.8	1409	13	17549	-265	16319	72	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTGGCATCTGAAGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	88840939	88830869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871
ONT_simulated_read_10256426	chr14	-	1167	1	ISM	ENSMUSG00000034190.10	ENSMUST00000036381.10	2649	10	14251	117	14251	-117	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTCAAAGAGTCTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	69955732	69954565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_69954600_69955700
ONT_simulated_read_10257361	chrX	-	1126	4	ISM	ENSMUSG00000031137.18	ENSMUST00000033473.12	2499	5	2486	813	2486	3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGGGTTGAATCTGAATT	NA	NA	NA	NA	NA	NA	NA	NA	58177310	58108317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_58109030_58112760_58112960_58171253_58171358_58177199
ONT_simulated_read_10258829	chr17	+	1117	5	FSM	ENSMUSG00000061130.14	ENST00000345249.8	1675	5	-27	585	0	-585	multi-exon	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTTGCATACACCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	85265436	85321436	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_85265823_85310693_85310812_85312339_85312452_85312936_85312995_85320993
ONT_simulated_read_10258938	chr18	-	1079	5	ISM	ENSMUSG00000024613.17	ENSMUST00000175934.8	4595	26	30725	199	30725	-199	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTCTCCCTTCAAATCCA	NA	NA	NA	NA	NA	NA	NA	NA	60951276	60947025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101
ONT_simulated_read_10260482	chr2	-	979	8	ISM	ENSMUSG00000027360.6	ENST00000267845.8	2213	12	2270	7880	2270	-7880	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAACTCTGGTGCAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	126458268	126443564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_126443625_126443706_126443870_126444880_126444948_126445761_126445906_126446160_126446296_126448279_126448403_126449216_126449331_126458095
ONT_simulated_read_10260989	chr3	-	923	1	ISM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	10607	1439	10531	670	mono-exon	FALSE	NA	NA	NA	NA	NA	350	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGTGGTTTAAAATGGT	NA	NA	NA	NA	NA	NA	NA	NA	65289437	65288514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_65288500_65289400
ONT_simulated_read_1026109	chr4	-	695	1	ISM	ENSMUSG00000028232.14	ENSMUST00000029891.12	2690	8	24305	813	13710	679	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTCCTTCAGGTATGATG	NA	NA	NA	NA	NA	NA	NA	NA	3550548	3549853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_3549900_3550500
ONT_simulated_read_10264758	chr4	+	858	7	ISM	ENSMUSG00000066037.15	ENSMUST00000131671.8	2543	10	83	8145	0	-7610	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAAATGTGGTTACAGTAG	NA	NA	NA	NA	NA	NA	NA	NA	136038335	136059847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_136038401_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708
ONT_simulated_read_10265010	chr17	+	382	1	FSM	ENSMUSG00000117476.2	ENSMUST00000234959.2	313	1	0	-69	0	69	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAAGAGTAACTCACTGT	NA	NA	NA	NA	NA	NA	NA	NA	94915612	94915994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_94915600_94916000
ONT_simulated_read_10265732	chr11	+	1332	5	FSM	ENSMUSG00000020149.18	ENST00000409751.1	1335	5	3	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATGGTGATAAGTATTG	NA	NA	NA	NA	NA	NA	NA	NA	20151438	20175464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_20151653_20165629_20165703_20173083_20173180_20174366_20174499_20174647
ONT_simulated_read_1026608	chr8	-	773	6	ISM	ENSMUSG00000039720.8	ENSMUST00000038174.8	1356	9	2202	472	560	0	internal_fragment	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTAAGTTCGAGAATGGG	NA	NA	NA	NA	NA	NA	NA	NA	27690373	27687958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260
ONT_simulated_read_10267274	chr17	-	801	8	ISM	ENSMUSG00000024037.14	ENSMUST00000171171.9	4154	11	9111	2529	6237	-39	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAGAGAGACTGCAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	31722614	31715824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483
ONT_simulated_read_10267591	chr15	-	1098	2	ISM	ENSMUSG00000037465.11	ENSMUST00000226363.2	2917	4	1555	1564	1555	-1564	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCCAAACTGGCAAATGGA	NA	NA	NA	NA	NA	NA	NA	NA	38297771	38296223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_38296409_38296858
ONT_simulated_read_10268763	chr16	-	1348	1	ISM	ENSMUSG00000022894.7	ENSMUST00000023611.7	10791	8	38658	5650	38658	-5650	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTATCATTTGGGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	85660058	85658710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_85658700_85660100
ONT_simulated_read_10269212	chr15	-	1303	2	ISM	ENSMUSG00000023009.15	ENSMUST00000023747.14	4853	13	28315	4910	28315	-4910	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGAGCACCTTTAGGGGTT	NA	NA	NA	NA	NA	NA	NA	NA	99327314	99324825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_99326049_99327234
ONT_simulated_read_10269750	chr11	-	1255	8	ISM	ENSMUSG00000020160.19	ENST00000495021.6	2750	12	3527	893	3527	-685	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAAATTTTTCCACACTA	NA	NA	NA	NA	NA	NA	NA	NA	18961354	18831359	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_18831923_18833987_18834083_18834386_18834477_18835592_18835652_18855688_18855766_18891658_18891805_18938267_18938380_18961241
ONT_simulated_read_10271684	chr7	-	545	6	ISM	ENSMUSG00000061028.8	ENST00000221455.8	2021	19	17959	1118	17959	-1118	internal_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTTCTCCACCCTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	19319265	19316152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_19316240_19318079_19318127_19318208_19318268_19318394_19318456_19318708_19318749_19319014
ONT_simulated_read_10272540	chr5	-	1159	9	ISM	ENSMUSG00000029469.15	ENSMUST00000031426.14	2950	19	23317	623	23317	-623	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTCCTGAGTTTTATG	NA	NA	NA	NA	NA	NA	NA	NA	122729264	122688889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_122689267_122693559_122693606_122697217_122697304_122697759_122697832_122698721_122698809_122705323_122705414_122706973_122707103_122710702_122710853_122729142
ONT_simulated_read_10272895	chr16	-	270	3	ISM	ENSMUSG00000022956.12	ENSMUST00000023677.10	838	7	2677	1330	2677	-1330	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACACCCAGGGTATCATCT	NA	NA	NA	NA	NA	NA	NA	NA	91725898	91723431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_91723460_91723740_91723871_91725786
ONT_simulated_read_10282860	chr2	-	1246	6	ISM	ENSMUSG00000042272.18	ENSMUST00000102660.8	8990	18	68811	6329	68811	-114	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATGAAGAAAACCCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	77027301	77017012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_77017605_77018843_77018966_77021304_77021497_77022042_77022166_77022842_77022925_77027166
ONT_simulated_read_10284378	chr9	-	836	3	ISM	ENSMUSG00000063849.7	ENST00000567336.1	549	4	14785	-461	14785	105	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGAAGAAACACCATAGCT	NA	NA	NA	NA	NA	NA	NA	NA	57327552	57321449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_57322010_57322368_57322538_57327445
ONT_simulated_read_10285373	chr9	+	1357	4	ISM	ENSMUSG00000006673.15	ENSMUST00000006851.15	3331	11	38	25763	-4	-10689	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTAGTGCAGACCCTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	108394350	108411599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108394440_108395901_108396026_108405787_108406118_108410785
ONT_simulated_read_10286088	chr11	-	202	3	ISM	ENSMUSG00000020883.19	ENST00000577399.5	1502	15	40817	10451	40050	-10451	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCACTAGTGAGAGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	98000357	97990867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97990936_97992526_97992623_98000319
ONT_simulated_read_1028648	chr7	+	2298	8	ISM	ENSMUSG00000025326.13	ENSMUST00000107537.5	4911	11	48184	590	48133	-590	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAGTTTCCCATCCCTA	NA	NA	NA	NA	NA	NA	NA	NA	58926682	58955885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
ONT_simulated_read_10286765	chr5	+	1400	12	ISM	ENSMUSG00000029482.5	ENSMUST00000031445.5	3239	18	0	5514	0	-5514	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCTGAAAGCCCAGAGTTAC	NA	NA	NA	NA	NA	NA	NA	NA	125552877	125588960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_125553174_125559893_125559998_125561600_125561722_125566846_125566961_125571970_125572069_125580246_125580362_125580612_125580695_125583212_125583361_125585740_125585822_125586842_125586968_125588703_125588769_125588909
ONT_simulated_read_10287197	chr9	+	579	4	FSM	ENSMUSG00000025888.7	ENST00000534497.5	621	4	42	0	42	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	3319	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAAGTATGTCATACCAATG	NA	NA	NA	NA	NA	NA	NA	NA	5303037	5306769	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_5303172_5303539_5303775_5306116_5306227_5306669
ONT_simulated_read_10287202	chr8	-	906	7	ISM	ENSMUSG00000031788.15	ENSMUST00000169353.3	2898	16	6890	474	6890	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCGAGTCTCTGTGTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	95830162	95826929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_95827081_95827274_95827302_95828036_95828146_95828639_95828775_95828974_95829205_95829290_95829421_95830038
ONT_simulated_read_102874	chr3	-	2206	16	NIC	ENSMUSG00000027676.12	novel	3606	20	NA	NA	5003	2	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	158	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCCCGAGCTCGAGATCT	NA	NA	NA	NA	NA	NA	NA	NA	33893341	33868390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_33868416_33868501_33868679_33868803_33868945_33869560_33869668_33870976_33871101_33873956_33874166_33875525_33875664_33879539_33879705_33880603_33880799_33884173_33884307_33884805_33884910_33886676_33886869_33890864_33890994_33891088_33891182_33891954_33892114_33893226
ONT_simulated_read_10290343	chr2	-	2808	1	ISM	ENSMUSG00000035666.15	ENSMUST00000171404.8	7127	6	13565	1689	13491	-1683	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAGCCCTAGCCTGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	28716807	28713999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_28714000_28716800
ONT_simulated_read_10290560	chr8	-	760	1	NIC	ENSMUSG00000031617.17	novel	2678	10	NA	NA	13472	-440	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTACCGAATCTTCTGAT	NA	NA	NA	NA	NA	NA	NA	NA	78323810	78323050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_78323000_78323800
ONT_simulated_read_10291427	chr2	-	874	7	ISM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	8840	1240	8840	-1240	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	147	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGCTGAATGTGAAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	154907577	154902469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456
ONT_simulated_read_10293820	chr4	-	185	1	ISM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	31161	1871	31161	-1871	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAATGCCCCTAACTGAC	NA	NA	NA	NA	NA	NA	NA	NA	25250660	25250475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_25250500_25250700
ONT_simulated_read_10294701	chr19	-	1181	3	ISM	ENSMUSG00000094936.9	ENSMUST00000179189.9	1411	4	1039	186	1030	-186	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTTCTCGGCTCTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	4842849	4835520	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4835596_4837388_4838071_4842425
ONT_simulated_read_10295492	chr14	-	816	1	NIC	ENSMUSG00000021910.16	novel	4990	17	NA	NA	4646	-379	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGTAGGTCCTTACCCA	NA	NA	NA	NA	NA	NA	NA	NA	30908841	30908025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_30908000_30908800
ONT_simulated_read_10295962	chr1	-	168	1	ISM	ENSMUSG00000026492.12	ENSMUST00000027769.6	2449	8	16917	1128	16917	-1128	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAGGAAGAGTCTGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	179356915	179356747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_179356700_179356900
ONT_simulated_read_10297437	chr5	-	631	1	ISM	ENSMUSG00000015653.14	ENSMUST00000115426.9	10408	6	20898	8221	9383	-1320	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAACATTACTCAGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	5723680	5723049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_5723000_5723700
ONT_simulated_read_10297923	chr1	-	1266	10	ISM	ENSMUSG00000026721.17	ENSMUST00000028049.13	2748	21	57192	370119	57114	17983	internal_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAAGAGTGGTGTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	160563324	160454893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_160454936_160472877_160472972_160509610_160509753_160528281_160528449_160529927_160530031_160537716_160537784_160549702_160549814_160551601_160551760_160561098_160561274_160563117
ONT_simulated_read_10298679	chr13	+	1339	11	ISM	ENSMUSG00000021686.7	ENSMUST00000022196.5	4021	27	113903	634	113903	-634	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCATCAACACCGAGAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	94609370	94702191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_94609438_94613473_94613637_94616234_94616383_94619720_94619869_94630176_94630250_94638425_94638533_94664672_94664905_94668489_94668575_94679286_94679385_94684262_94684402_94702112
ONT_simulated_read_10299031	chr2	+	714	1	FSM	ENSMUSG00000025201.8	ENSMUST00000183232.2	432	1	0	-282	0	282	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGAGTCCAGTGAGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	52509765	52510479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_52509800_52510500
ONT_simulated_read_1030223	chr7	+	2327	1	FSM	ENSMUSG00000109051.2	ENSMUST00000208060.2	2990	1	0	663	0	-663	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTCTAAATTAGCCGGTT	NA	NA	NA	NA	NA	NA	NA	NA	48995841	48998168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_48995800_48998200
ONT_simulated_read_1030663	chr17	-	610	1	ISM	ENSMUSG00000079471.5	ENSMUST00000178858.3	804	2	399	88	298	-88	mono-exon	FALSE	NA	NA	NA	NA	NA	178	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAAGCCCTTGCTTCCCGT	NA	NA	NA	NA	NA	NA	NA	NA	45912594	45911984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_45912000_45912600
ONT_simulated_read_10306895	chr7	+	771	6	ISM	ENSMUSG00000030890.17	ENST00000537806.5	1803	12	485	1479	25	-1479	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAAGGTGCTGAAGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	105386329	105390615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105386445_105389383_105389550_105389719_105389816_105389977_105390251_105390354_105390441_105390580
ONT_simulated_read_10308134	chr13	-	974	12	ISM	ENSMUSG00000021639.18	ENST00000513202.5	1310	14	1217	181	1217	-181	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCCAACTCCTTCAGGTA	NA	NA	NA	NA	NA	NA	NA	NA	100625422	100605439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356
ONT_simulated_read_10309243	chr1	-	157	1	ISM	ENSMUSG00000025982.14	ENSMUST00000027127.14	6195	25	40011	2145	40011	-2145	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCACACCTTAAACCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	55026629	55026472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_55026500_55026600
ONT_simulated_read_10309451	chr2	-	2203	2	ISM	ENSMUSG00000027171.11	ENSMUST00000028593.11	2872	6	10422	0	10422	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAAACAAAAACGTAG	NA	NA	NA	NA	NA	NA	NA	NA	104669799	104661085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_104663156_104669666
ONT_simulated_read_10311007	chr19	-	415	1	NIC	ENSMUSG00000024666.7	novel	1529	5	NA	NA	5491	-702	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGTTCATGCAAGTCCGA	NA	NA	NA	NA	NA	NA	NA	NA	10548960	10548545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_10548500_10549000
ONT_simulated_read_10312827	chr15	-	1741	1	ISM	ENSMUSG00000089715.13	ENSMUST00000109627.8	5806	5	6264	2788	5802	-543	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGCCACTGCCTGGGAT	NA	NA	NA	NA	NA	NA	NA	NA	79712625	79710884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79710900_79712600
ONT_simulated_read_10313697	chr3	+	1012	11	ISM	ENSMUSG00000027775.10	ENSMUST00000029344.10	3011	16	0	7626	0	-3441	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCCCATGTCTCCATTAT	NA	NA	NA	NA	NA	NA	NA	NA	67490073	67503944	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926
ONT_simulated_read_10316674	chr8	-	540	3	ISM	ENSMUSG00000035439.14	ENSMUST00000035960.13	2013	11	220	11930	220	-11930	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTAATGAAGTCCTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	71725358	71715698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71715749_71721869_71721929_71724927
ONT_simulated_read_10319400	chr17	+	226	1	ISM	ENSMUSG00000059714.14	ENSMUST00000001569.15	1825	13	0	9336	0	-9155	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTCAAGACCCCGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	36134121	36134347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_36134100_36134300
ONT_simulated_read_10322088	chr6	-	1667	6	ISM	ENSMUSG00000030346.17	ENSMUST00000112220.8	2233	9	9500	265	9500	100	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATATATATGCTTACACTG	NA	NA	NA	NA	NA	NA	NA	NA	126907050	126900277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904651_126905103_126905191_126906955
ONT_simulated_read_1032513	chr6	-	1039	10	ISM	ENSMUSG00000059182.9	ENSMUST00000078214.8	1583	13	16403	240	16403	-240	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGATACAAGCAGTAGAGATA	NA	NA	NA	NA	NA	NA	NA	NA	51973092	51836385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996
ONT_simulated_read_10326870	chr8	-	537	4	ISM	ENSMUSG00000004994.13	ENSMUST00000098578.10	2119	10	9712	1033	9679	-527	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTCCTGAAGAAGCTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	84987297	84985456	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_84985556_84985741_84985881_84986922_84987096_84987171
ONT_simulated_read_10327562	chr11	-	1695	1	ISM	ENSMUSG00000069892.10	ENSMUST00000101295.9	5985	4	30837	2820	30837	-2820	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCCTGGGTCCCTCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	48911215	48909520	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_48909500_48911200
ONT_simulated_read_10328731	chr14	+	1858	7	ISM	ENSMUSG00000022139.18	ENST00000679496.1	4588	9	103534	1689	54508	383	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTTTCACTTTTTAAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	120616652	120667421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_120616727_120622802_120623004_120626311_120626576_120633123_120633178_120633862_120634017_120640747_120640784_120666346
ONT_simulated_read_10331423	chr7	-	496	1	FSM	ENSMUSG00000083669.6	ENSMUST00000121822.2	348	1	0	-148	0	148	mono-exon	FALSE	NA	NA	NA	NA	NA	3103	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAGTGTGGACATAACCC	NA	NA	NA	NA	NA	NA	NA	NA	29664990	29664494	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_29664500_29665000
ONT_simulated_read_1033492	chr5	-	1629	12	ISM	ENSMUSG00000033294.12	ENSMUST00000042147.6	2075	15	1654	0	1654	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTGGCTAAATGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	110799629	110796283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_110796850_110796931_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798313_110798399_110798451_110798810_110798846_110798977_110799078_110799177_110799328_110799544
ONT_simulated_read_10335842	chr6	+	569	1	FSM	ENSMUSG00000060032.7	ENSMUST00000074556.7	1831	1	89	1173	0	-892	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACCCAGCGGGTGGATTG	NA	NA	NA	NA	NA	NA	NA	NA	136785330	136785899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_136785300_136785900
ONT_simulated_read_10341404	chrX	+	697	6	ISM	ENSMUSG00000025271.14	ENST00000374992.6	1099	9	19327	-33	19327	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	149396929	149426874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_149396948_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ONT_simulated_read_1034196	chr18	-	3805	20	ISM	ENSMUSG00000003778.15	ENSMUST00000115765.2	3869	21	1050	0	1050	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAAAAGAATAA	NA	NA	NA	NA	NA	NA	NA	NA	34756604	34734227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507
ONT_simulated_read_10345202	chr11	-	1674	14	ISM	ENSMUSG00000020340.17	ENST00000616178.4	4213	32	20712	64735	20654	-64735	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACACAGGTGAGCGGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	46182467	46151634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_46151775_46152263_46152431_46156730_46156857_46157536_46157657_46161378_46161497_46163435_46163528_46165464_46165570_46167605_46167735_46168885_46168983_46170778_46170961_46174983_46175086_46176893_46176972_46180458_46180549_46182339
ONT_simulated_read_10346387	chr18	-	939	1	NIC	ENSMUSG00000024378.10	novel	5097	6	NA	NA	4411	527	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGTCAGTGCTAAAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	33336869	33335930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_33335900_33336900
ONT_simulated_read_10348095	chr10	-	220	1	ISM	ENSMUSG00000004934.15	ENSMUST00000005064.14	2571	11	13570	868	13570	-868	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTTCCAGAAAGGCCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	80990187	80989967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80990000_80990200
ONT_simulated_read_10352279	chr11	-	452	4	ISM	ENSMUSG00000020831.19	ENSMUST00000108576.10	576	6	834	0	708	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCCACCTCTGACCCTC	NA	NA	NA	NA	NA	NA	NA	NA	70127796	70126229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_70126295_70126521_70126627_70126849_70127038_70127702
ONT_simulated_read_1035230	chr10	+	1025	1	FSM	ENSMUSG00000045455.9	ENSMUST00000052902.9	613	1	75	-487	0	487	mono-exon	FALSE	NA	NA	NA	NA	NA	266	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGACTTAGGCCAGTTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	11485041	11486066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_11485000_11486100
ONT_simulated_read_10353155	chr2	+	760	8	ISM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	74	18608	-23	-18119	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGCTTCTCGATATTTCA	NA	NA	NA	NA	NA	NA	NA	NA	152068832	152105164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102
ONT_simulated_read_10356452	chr13	+	426	3	ISM	ENSMUSG00000037966.16	ENSMUST00000049022.15	1187	4	51	1256	11	-1256	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTCATTACGGCCTTCGG	NA	NA	NA	NA	NA	NA	NA	NA	49341011	49348464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_49341114_49347211_49347441_49348369
ONT_simulated_read_10356697	chr2	+	1844	18	ISM	ENSMUSG00000027176.9	ENSMUST00000028599.8	2817	21	95	1991	95	-1991	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAGCACGTAAGATCCAG	NA	NA	NA	NA	NA	NA	NA	NA	104420962	104493783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_104421048_104439215_104439318_104439435_104439532_104474633_104474667_104475323_104475422_104476744_104476812_104476953_104476989_104477068_104477196_104478514_104478593_104479797_104479961_104481986_104482097_104482789_104482907_104483348_104483424_104484505_104484650_104486033_104486137_104489610_104489681_104490863_104491060_104493638
ONT_simulated_read_10358151	chr15	-	1274	6	ISM	ENSMUSG00000053411.17	ENSMUST00000109616.9	2899	7	2031	1412	1919	891	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGACAGCTTCCTACCTG	NA	NA	NA	NA	NA	NA	NA	NA	79814822	79801419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786
ONT_simulated_read_10359272	chr18	-	1370	3	ISM	ENSMUSG00000036225.16	ENSMUST00000168989.9	2777	5	77166	-651	77166	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	240	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGATCTGTGTAGAACAC	NA	NA	NA	NA	NA	NA	NA	NA	15119509	15101805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_15102753_15107036_15107343_15119392
ONT_simulated_read_10359387	chr15	-	329	1	ISM	ENSMUSG00000022365.7	ENSMUST00000022993.7	3175	8	20542	2076	20389	-97	mono-exon	FALSE	NA	NA	NA	NA	NA	464	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCAAGTCCTTACTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	57735302	57734973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_57735000_57735300
ONT_simulated_read_10360275	chr4	-	1156	1	Genic_Genomic	ENSMUSG00000028492.14	novel	NA	NA	NA	NA	42131	5	mono-exon	FALSE	NA	NA	NA	NA	NA	293	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAATGACACATACTCAT	NA	NA	NA	NA	NA	NA	NA	NA	86364026	86362870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr4_-_86362900_86364000
ONT_simulated_read_10365058	chr1	+	937	8	ISM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	15342	2302	15342	-2302	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCACGCAGCAGATGTAGG	NA	NA	NA	NA	NA	NA	NA	NA	128187240	128204813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_128187275_128188570_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693
ONT_simulated_read_1036587	chr9	-	1206	1	NIC	ENSMUSG00000025241.17	novel	7949	19	NA	NA	8517	-36678	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCAGCAGCGAGAGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	123659545	123658339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_123658300_123659500
ONT_simulated_read_10367445	chr7	+	627	5	ISM	ENSMUSG00000030763.8	ENSMUST00000033025.7	1369	11	0	25874	0	-25865	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTATAGCCTGTGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	122977204	123003707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645
ONT_simulated_read_1036970	chr2	-	1939	1	ISM	ENSMUSG00000026932.15	ENSMUST00000114159.9	6675	6	31704	3000	31704	-3000	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTAGCAGCTGCTGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	25950485	25948546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25948500_25950500
ONT_simulated_read_10376366	chr13	-	1191	11	ISM	ENSMUSG00000006191.18	ENSMUST00000006353.14	2629	16	78373	29400	78362	-29400	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAAACCAGAGTGTATACA	NA	NA	NA	NA	NA	NA	NA	NA	29961284	29538683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_29538778_29541482_29541567_29627990_29628054_29658511_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199
ONT_simulated_read_10378997	chr6	-	982	1	ISM	ENSMUSG00000030042.16	ENSMUST00000095786.6	1769	4	4912	335	4853	-335	mono-exon	FALSE	NA	NA	NA	NA	NA	341	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGGCTAGGGCTTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	82624998	82624016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_82624000_82625000
ONT_simulated_read_1038153	chr18	-	2112	13	ISM	ENSMUSG00000041482.18	ENST00000580640.5	8335	54	313358	17506	313358	-17506	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTGAGTAGAAGCATGAG	NA	NA	NA	NA	NA	NA	NA	NA	63205982	63162124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_63162259_63163345_63163599_63165911_63166095_63174617_63174877_63175503_63175912_63183602_63183770_63186034_63186202_63190175_63190236_63192721_63192837_63197743_63197851_63201974_63202047_63203026_63203149_63205917
ONT_simulated_read_10384887	chr5	-	1082	1	ISM	ENSMUSG00000118665.1	ENSMUST00000239512.1	4451	13	56364	1148	54303	-1147	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCGCTTTATGCACACAC	NA	NA	NA	NA	NA	NA	NA	NA	100592129	100591047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_100591000_100592100
ONT_simulated_read_10386631	chr19	+	553	6	ISM	ENSMUSG00000024911.8	ENSMUST00000225141.2	1209	10	1933	643	1920	-641	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCACTCCCTGGATGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	5512576	5514436	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_5512661_5513198_5513333_5513631_5513741_5513814_5513879_5514156_5514244_5514361
ONT_simulated_read_10387700	chr8	+	337	3	ISM	ENSMUSG00000038604.10	ENSMUST00000043531.10	4108	22	0	7465	0	-7465	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGACCTGGTGTACACTG	NA	NA	NA	NA	NA	NA	NA	NA	106331886	106341386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_106331983_106341030_106341158_106341272
ONT_simulated_read_10388253	chr11	-	557	5	ISM	ENSMUSG00000020460.16	ENSMUST00000102845.11	791	6	52	443	52	-443	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	2474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGTGGTGTTAGCAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	29498057	29496288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_29496423_29496702_29496789_29497205_29497261_29497680_29497746_29497840
ONT_simulated_read_10397161	chr10	-	782	1	ISM	ENSMUSG00000020312.13	ENSMUST00000020564.7	3243	13	17826	659	17826	-659	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTGTTTCCCCAGTCCC	NA	NA	NA	NA	NA	NA	NA	NA	79455926	79455144	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_79455100_79455900
ONT_simulated_read_10397310	chrX	-	2044	6	ISM	ENSMUSG00000035776.15	ENSMUST00000080035.11	3327	9	52033	1025	52014	-1025	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAGCACTGGGAAAATGA	NA	NA	NA	NA	NA	NA	NA	NA	70484218	70464690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_70466356_70467629_70467696_70472652_70472773_70473916_70473956_70481739_70481806_70484130
ONT_simulated_read_10398121	chr7	-	652	5	ISM	ENSMUSG00000063802.6	ENST00000433386.7	1475	8	7038	247	7038	-247	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGATCGCTGAGACCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	4680929	4663781	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705
ONT_simulated_read_10398687	chr15	-	1056	1	ISM	ENSMUSG00000022475.20	ENSMUST00000079838.14	3985	25	37752	23	21121	1	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATATATGTTTTATTTGC	NA	NA	NA	NA	NA	NA	NA	NA	97691623	97690567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_97690600_97691600
ONT_simulated_read_10400537	chr12	-	203	1	FSM	ENSMUSG00000113113.2	ENSMUST00000223227.2	403	1	0	200	0	-200	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCTCTATCAAGTTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	100711194	100710991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_100711000_100711200
ONT_simulated_read_10400573	chr6	+	694	6	ISM	ENSMUSG00000058440.15	ENST00000353868.5	2888	12	26201	1872	26201	-90	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCCATGGCCCCAGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	30116113	30151586	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214_30140271_30151512
ONT_simulated_read_10402048	chr7	-	1096	1	ISM	ENSMUSG00000043671.15	ENSMUST00000051377.15	8006	19	63529	4665	63529	-4665	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCATTTCATGCTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	35390350	35389254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_35389300_35390400
ONT_simulated_read_10402221	chr16	-	512	5	ISM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	15456	1495	15456	-1495	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTAGTATCCATCCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	38355164	38346993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086
ONT_simulated_read_10402785	chr1	-	3303	13	ISM	ENSMUSG00000026600.13	ENSMUST00000051396.13	2925	15	20140	-589	20140	589	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCCACCTGCCTCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	156274234	156256773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_156258686_156259773_156259920_156260416_156260553_156261722_156261822_156263362_156263461_156265273_156265404_156266857_156266904_156267270_156267353_156268076_156268156_156268798_156269082_156269950_156270059_156272124_156272185_156274110
ONT_simulated_read_10404458	chr14	-	245	1	ISM	ENSMUSG00000021982.15	ENSMUST00000225839.2	3189	11	37025	1282	36922	226	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGAGTTGAGCGAATTGT	NA	NA	NA	NA	NA	NA	NA	NA	59798363	59798118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_59798100_59798400
ONT_simulated_read_10404888	chr3	-	1068	1	NIC	ENSMUSG00000027848.13	novel	5465	3	NA	NA	1337	-3917	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAACTCAGAGCCCTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	103643980	103642912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_103642900_103644000
ONT_simulated_read_10405160	chr2	-	536	1	ISM	ENSMUSG00000015776.13	ENSMUST00000102899.10	3506	3	4686	194	4578	132	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATCCTTAGGTTCAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	26796003	26795467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_26795500_26796000
ONT_simulated_read_10405921	chr4	+	659	5	ISM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	23679	1652	23679	-1652	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTCTGAAGACCAGCACT	NA	NA	NA	NA	NA	NA	NA	NA	3598553	3614967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_3598664_3602146_3602291_3604698_3604916_3605822_3605902_3614858
ONT_simulated_read_10406212	chr8	+	3421	9	ISM	ENSMUSG00000036054.16	ENSMUST00000164403.8	4099	10	7	1320	0	-1320	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGAACGTGGGCTTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	70686882	70712372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70687303_70689317_70689445_70695140_70696707_70701075_70701197_70704263_70704752_70706228_70706341_70709779_70710265_70711592_70711655_70712332
ONT_simulated_read_10409522	chr4	-	2050	1	Genic_Genomic	ENSMUSG00000086483.2	novel	NA	NA	NA	NA	28963	1778	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAGGGCAGAAAAGATT	NA	NA	NA	NA	NA	NA	NA	NA	108800311	108798261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr4_-_108798300_108800300
ONT_simulated_read_10411908	chr2	+	2057	1	ISM	ENSMUSG00000027523.21	ENSMUST00000087877.11	3947	2	0	2103	0	-2103	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCGGCGAAACCGCCGCC	NA	NA	NA	NA	NA	NA	NA	NA	174139651	174141708	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_174139700_174141700
ONT_simulated_read_10415544	chr16	-	1216	10	NIC	ENSMUSG00000022533.15	novel	7220	33	NA	NA	4184	-37372	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGGATTGTGTATGCT	NA	NA	NA	NA	NA	NA	NA	NA	30181540	30168612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_30168692_30169780_30169939_30170046_30170227_30171085_30171218_30173049_30173123_30174570_30174706_30176022_30176093_30180237_30180309_30180631_30180803_30181393
ONT_simulated_read_10415974	chr8	-	890	5	ISM	ENSMUSG00000040028.11	ENSMUST00000209010.2	2317	6	845	1352	845	-1352	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGCTGCAATGGCCATA	NA	NA	NA	NA	NA	NA	NA	NA	4361774	4339694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_4339925_4345335_4345562_4351684_4351839_4354926_4355031_4361598
ONT_simulated_read_10416411	chr15	-	452	2	ISM	ENSMUSG00000022362.14	ENSMUST00000176935.8	1326	4	45352	467	45110	-467	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGCTCAGGAGAATATGC	NA	NA	NA	NA	NA	NA	NA	NA	57894469	57892105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_57892441_57894352
ONT_simulated_read_10416964	chr17	+	1166	11	ISM	ENSMUSG00000002833.12	ENSMUST00000226053.2	2270	16	14068	1345	13978	-126	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCCTGGGGCCGAAAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	56400701	56406247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176
ONT_simulated_read_10417122	chr17	+	543	1	FSM	ENSMUSG00000062619.7	ENSMUST00000071430.7	762	1	0	219	0	-219	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGACTGGGTCCTACAC	NA	NA	NA	NA	NA	NA	NA	NA	47083560	47084103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_47083600_47084100
ONT_simulated_read_1041996	chr5	+	1693	16	ISM	ENSMUSG00000063646.19	ENSMUST00000174629.2	1941	18	0	6316	0	-6316	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGCCAGCCAGCGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	37242713	37299029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_37242843_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220_37282320_37284720_37284823_37285348_37285403_37285934_37286001_37291580_37291650_37292899_37292978_37298956
ONT_simulated_read_1042385	chr17	+	883	3	ISM	ENSMUSG00000024038.18	ENSMUST00000046288.16	1582	4	67	3340	0	746	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGGAATCTTACCCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	31739158	31746965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_31739236_31740542_31740667_31746283
ONT_simulated_read_10424849	chr15	+	977	9	FSM	ENSMUSG00000022407.11	ENST00000623632.4	1025	9	-42	90	23	-90	multi-exon	FALSE	canonical	NA	NA	NA	NA	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGGCAGATGCCTACTTCA	NA	NA	NA	NA	NA	NA	NA	NA	80832742	80851878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80851312_80851403_80851789
ONT_simulated_read_10425262	chr18	-	308	1	ISM	ENSMUSG00000024259.10	ENSMUST00000060396.7	4371	8	26145	3282	26145	-3282	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGGAAACAGTTCTGCATC	NA	NA	NA	NA	NA	NA	NA	NA	31716810	31716502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_31716500_31716800
ONT_simulated_read_10425415	chr3	-	789	1	NIC	ENSMUSG00000037174.19	novel	5919	10	NA	NA	10512	-1198	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTTATTTTATGTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	51174277	51173488	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_51173500_51174300
ONT_simulated_read_10425854	chr10	+	2630	1	ISM	ENSMUSG00000060733.14	ENSMUST00000079252.13	5447	6	33986	1507	33913	-1507	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGCAGTTGCCCGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	71217578	71220208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_71217600_71220200
ONT_simulated_read_10426479	chr3	-	296	3	ISM	ENSMUSG00000027829.16	ENSMUST00000029416.14	2169	11	9655	1803	9534	-1803	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAGTCAAAAAAGAACCTG	NA	NA	NA	NA	NA	NA	NA	NA	65856015	65855374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_65855430_65855682_65855825_65855916
ONT_simulated_read_10428986	chr18	-	2139	14	ISM	ENSMUSG00000041482.18	ENST00000580640.5	8335	54	271237	71653	271237	26319	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTTGTATCGACGCAG	NA	NA	NA	NA	NA	NA	NA	NA	63248103	63216271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_63216350_63217749_63217951_63219234_63219361_63219648_63219826_63223950_63224112_63225873_63226089_63226454_63226488_63232123_63232166_63235091_63235266_63239248_63239398_63241045_63241342_63242935_63243060_63246948_63247180_63247971
ONT_simulated_read_10430679	chr5	+	951	3	ISM	ENSMUSG00000029345.14	ENSMUST00000031288.14	3560	14	9284	377	9284	-377	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGAGTCTGCGGCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	112483507	112485562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_112483582_112483880_112484047_112484851
ONT_simulated_read_10432428	chr5	-	1402	4	ISM	ENSMUSG00000037339.18	ENSMUST00000045329.10	2346	5	14787	175	14077	-175	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTGCCTGACCAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	33772179	33757874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946
ONT_simulated_read_10434154	chr10	-	550	1	ISM	ENSMUSG00000020263.15	ENSMUST00000020500.14	3020	21	47932	224	47932	-224	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGACCAATTAATTTAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	83436670	83436120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_83436100_83436700
ONT_simulated_read_104366	chr15	+	1302	5	FSM	ENSMUSG00000059895.14	ENST00000520105.5	1324	5	22	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	465	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCTGTACCTCATTACAT	NA	NA	NA	NA	NA	NA	NA	NA	73596646	73628773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_73596698_73622977_73623877_73625604_73625698_73627142_73627274_73628645
ONT_simulated_read_10437367	chr14	+	599	5	ISM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	81	6902	0	-6902	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTATCAGAAGGGGTCAGC	NA	NA	NA	NA	NA	NA	NA	NA	29700374	29708274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233
ONT_simulated_read_10438505	chr8	-	913	4	ISM	ENSMUSG00000031819.14	ENSMUST00000034277.14	4942	5	7260	3665	7226	254	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACATTCCCAAAGCCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	121387600	121384317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_121384988_121385266_121385362_121385743_121385814_121387522
ONT_simulated_read_10442794	chr1	+	1083	7	FSM	ENSMUSG00000026240.13	ENST00000410024.5	1067	7	-16	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGCAGTGAGTTCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	86510625	86533017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_86510819_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
ONT_simulated_read_10444841	chr15	+	906	1	FSM	ENSMUSG00000079242.3	ENSMUST00000168646.2	1280	1	0	374	0	-374	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAAGAGGTGGCTAAGCG	NA	NA	NA	NA	NA	NA	NA	NA	89313791	89314697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_89313800_89314700
ONT_simulated_read_1044590	chr7	-	953	8	ISM	ENSMUSG00000002602.17	ENSMUST00000002677.11	4265	20	2678	13442	2678	-13085	internal_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAGCACTTGTGGCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	25485434	25470139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_25470191_25472523_25472551_25472767_25472919_25473508_25473649_25473939_25474151_25477794_25477911_25478048_25478130_25485258
ONT_simulated_read_10446526	chr6	-	402	1	ISM	ENSMUSG00000030298.11	ENSMUST00000032440.6	1353	9	12280	0	12280	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1047	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCATCCCACACAGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	113705424	113705022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113705000_113705400
ONT_simulated_read_10447383	chr3	-	755	1	NIC	ENSMUSG00000028165.10	novel	3361	3	NA	NA	12183	-458	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTAGGGCTCTTCCCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	135116985	135116230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_135116200_135117000
ONT_simulated_read_10447774	chr8	-	210	2	ISM	ENSMUSG00000031816.16	ENST00000634347.1	1112	7	2466	4208	2466	-4208	internal_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTAGAGACAGGCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	121831248	121829651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_121829744_121831130
ONT_simulated_read_10450641	chr10	+	511	3	ISM	ENSMUSG00000040054.18	ENSMUST00000217851.2	8385	29	25	18317	0	-18313	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCCTTGGGGGCAACCGA	NA	NA	NA	NA	NA	NA	NA	NA	127927503	127946854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_127927646_127944762_127944901_127946623
ONT_simulated_read_10452624	chr19	+	1027	6	ISM	ENSMUSG00000024989.16	ENSMUST00000169673.3	2757	10	47	5241	0	-4318	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGCCGCTGCTTCCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	38043536	38057628	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_38043766_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527
ONT_simulated_read_10453196	chr16	+	2425	7	ISM	ENSMUSG00000075254.13	ENSMUST00000152782.8	8161	15	79	35974	0	-31211	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTCCAACACTCAAGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	33504914	33555972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_33505226_33530769_33531070_33545794_33546014_33546670_33547967_33550846_33550964_33551968_33552089_33555910
ONT_simulated_read_10454017	chr16	-	1365	1	ISM	ENSMUSG00000038965.18	ENSMUST00000232139.2	2906	5	48388	884	47209	-882	mono-exon	FALSE	NA	NA	NA	NA	NA	269	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGAAGCTGATGGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	16972125	16970760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_16970800_16972100
ONT_simulated_read_10454706	chr6	+	421	4	ISM	ENSMUSG00000042810.15	ENST00000496259.5	2202	14	1162	6634	1162	-6634	internal_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTTTGAAGGAGATCCT	NA	NA	NA	NA	NA	NA	NA	NA	48380976	48383805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_48381075_48382170_48382324_48383233_48383366_48383767
ONT_simulated_read_10455319	chr4	+	881	7	ISM	ENSMUSG00000029033.17	ENST00000354700.10	3494	21	6094	1942	6094	-1942	internal_fragment	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAGGCAGCTCGTACCCG	NA	NA	NA	NA	NA	NA	NA	NA	155987115	155989567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155987324_155987416_155987487_155987595_155987691_155987767_155987971_155988207_155988316_155989284_155989384_155989469
ONT_simulated_read_10455597	chr2	-	782	7	ISM	ENSMUSG00000002107.19	ENSMUST00000142941.8	2338	12	105796	7649	105796	-7555	internal_fragment	FALSE	canonical	NA	NA	NA	NA	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGCCTACTCAGGAATTC	NA	NA	NA	NA	NA	NA	NA	NA	6620628	6558699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_6558794_6565481_6565602_6590784_6590920_6604844_6604909_6608834_6608994_6612692_6612773_6620498
ONT_simulated_read_10455992	chr6	-	451	1	ISM	ENSMUSG00000030126.18	ENSMUST00000088896.10	5838	6	171125	3300	34594	85	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGAAGTTTTTTGGGCAA	NA	NA	NA	NA	NA	NA	NA	NA	115999322	115998871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_115998900_115999300
ONT_simulated_read_1045891	chr3	-	1639	11	ISM	ENSMUSG00000015702.14	ENSMUST00000107183.8	1872	13	864	0	864	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACCCTAAAACAAAGACGG	NA	NA	NA	NA	NA	NA	NA	NA	95213251	95203406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95204164_95204547_95204671_95207463_95207523_95207612_95207709_95207841_95207927_95208402_95208463_95208621_95208702_95209645_95209737_95209976_95210091_95210296_95210392_95213172
ONT_simulated_read_10459114	chr6	-	1148	3	ISM	ENSMUSG00000033216.10	ENSMUST00000165242.4	2679	7	148314	716	148302	-177	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCCAGGAGGGCCTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	88275207	88235031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_88235374_88258530_88258688_88274558
ONT_simulated_read_10461892	chr13	-	1577	10	ISM	ENSMUSG00000021301.10	ENST00000395891.7	6620	30	1407	87743	1407	-86382	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGCCAGAGAGGAAGAAAT	NA	NA	NA	NA	NA	NA	NA	NA	14696082	14491511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_14491946_14493458_14493560_14497062_14497206_14515329_14515500_14520604_14520681_14531717_14531813_14546539_14546648_14552242_14552568_14609018_14609077_14696015
ONT_simulated_read_10463088	chr9	+	1065	9	ISM	ENSMUSG00000032458.7	ENSMUST00000035033.7	3050	22	0	10974	0	-10974	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTGAAAGCAATGGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	98445783	98459461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380
ONT_simulated_read_10463515	chr9	+	336	1	NIC	ENSMUSG00000035048.14	novel	589	3	NA	NA	0	-7583	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATTTACAAAGCTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	102503522	102503858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_102503500_102503900
ONT_simulated_read_10464549	chr7	-	741	5	ISM	ENSMUSG00000030881.16	ENST00000445086.6	1320	6	1328	390	1288	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAACTTGGCTATCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	105288235	105285434	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105288215
ONT_simulated_read_10464576	chr7	+	491	4	FSM	ENSMUSG00000030663.13	ENST00000525684.1	567	4	22	54	22	-54	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCATCCTGACGACACAG	NA	NA	NA	NA	NA	NA	NA	NA	115692600	115703583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_115692761_115698674_115698759_115702445_115702556_115703446
ONT_simulated_read_10465366	chr18	-	1338	1	FSM	ENSMUSG00000044982.8	ENSMUST00000054984.8	2727	1	0	1389	0	-1389	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGATGTCAAGAACTGATG	NA	NA	NA	NA	NA	NA	NA	NA	32044877	32043539	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_32043500_32044900
ONT_simulated_read_10466846	chr7	-	762	5	ISM	ENSMUSG00000025512.16	ENSMUST00000153191.8	4182	13	24312	2632	24300	-2630	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACAATCACAGACTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	141095417	141075680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_141076060_141076283_141076327_141076513_141076595_141093646_141093803_141095314
ONT_simulated_read_10468670	chr4	+	2115	15	NIC	ENSMUSG00000035683.14	novel	2101	15	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGCTCTTTTTTGTATCT	NA	NA	NA	NA	NA	NA	NA	NA	44303567	44364232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_+_44303667_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
ONT_simulated_read_10471064	chr4	-	627	1	ISM	ENSMUSG00000032870.9	ENSMUST00000043200.8	2905	10	47612	692	47612	-692	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCAGTTTGGCCCTGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	120826832	120826205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_120826200_120826800
ONT_simulated_read_10471301	chr12	-	996	1	ISM	ENSMUSG00000057963.10	ENSMUST00000046518.12	2918	10	134467	886	134467	-886	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCACTGGCTATTGCTAGT	NA	NA	NA	NA	NA	NA	NA	NA	102536722	102535726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_102535700_102536700
ONT_simulated_read_10472007	chr13	-	958	6	ISM	ENSMUSG00000021546.19	ENSMUST00000177497.8	2585	12	3690	629	3690	82	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTTTCAGCAGCTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	58542179	58539681	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123
ONT_simulated_read_10472431	chr4	-	309	1	ISM	ENSMUSG00000047777.10	ENSMUST00000055688.10	3205	4	4494	1823	4494	-1823	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCACTCAGGTGCCTAAGC	NA	NA	NA	NA	NA	NA	NA	NA	152076221	152075912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_152075900_152076200
ONT_simulated_read_10473152	chr9	+	458	1	FSM	ENSMUSG00000049932.4	ENSMUST00000052686.4	1384	1	0	926	0	-926	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGTCGGCAAGAAGGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	44245990	44246448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_44246000_44246400
ONT_simulated_read_10474936	chr7	+	396	1	ISM	ENSMUSG00000030725.5	ENSMUST00000032967.4	1663	2	0	1693	0	-1693	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCAGGGCGCCCGCGCG	NA	NA	NA	NA	NA	NA	NA	NA	99808483	99808879	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_99808500_99808900
ONT_simulated_read_10476698	chr2	-	365	3	ISM	ENSMUSG00000036890.14	ENST00000409298.5	2074	8	73360	11056	4246	-11056	internal_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACAGCCAAGCATGAATT	NA	NA	NA	NA	NA	NA	NA	NA	44642203	44465489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_44465600_44481892_44482003_44642058
ONT_simulated_read_10480449	chr16	+	998	5	ISM	ENSMUSG00000003234.17	ENSMUST00000003319.6	3090	21	10767	374	10767	-374	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGGGTGTATTGGGATT	NA	NA	NA	NA	NA	NA	NA	NA	20378093	20379755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_20378130_20378390_20378483_20378664_20378798_20378932_20379021_20379106
ONT_simulated_read_10480604	chr19	-	2776	8	ISM	ENSMUSG00000025220.9	ENSMUST00000026243.5	5057	16	15554	655	-4763	-655	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTACCTTGCTTTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	45756436	45739352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_45740720_45743045_45743206_45746343_45746537_45746787_45746874_45749542_45749648_45750623_45750710_45753888_45754064_45755832
ONT_simulated_read_10482105	chr10	+	2608	5	ISM	ENSMUSG00000020085.16	ENSMUST00000099706.9	3086	9	12825	-6	7499	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGCTGGAGCTTTTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	61563926	61574432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361
ONT_simulated_read_10482454	chr7	+	317	1	ISM	ENSMUSG00000078816.11	ENST00000683513.1	2274	17	0	26516	0	-26516	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTTTTGCAGAAAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	3352037	3352354	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_3352000_3352400
ONT_simulated_read_10482981	chr2	-	3014	1	ISM	ENSMUSG00000057133.15	ENSMUST00000039782.14	10515	37	158875	156	158875	-156	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATTTTAACGTTCCGAGA	NA	NA	NA	NA	NA	NA	NA	NA	160792067	160789053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_160789100_160792100
ONT_simulated_read_10483970	chr2	-	1296	7	ISM	ENSMUSG00000027438.15	ENST00000398425.7	1699	10	25448	0	25443	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	664	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAACCATCTTTAGCT	NA	NA	NA	NA	NA	NA	NA	NA	148548944	148538575	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_148539427_148540102_148540154_148540850_148540920_148542292_148542398_148544980_148545066_148545189_148545246_148548865
ONT_simulated_read_10488050	chr8	-	418	4	ISM	ENSMUSG00000070000.14	ENST00000594202.5	2569	22	1095	6841	1095	-6841	internal_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGCACATCTGCAGCACA	NA	NA	NA	NA	NA	NA	NA	NA	72169928	72168410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_72168428_72169200_72169306_72169415_72169569_72169785
ONT_simulated_read_10489256	chr2	-	939	6	ISM	ENSMUSG00000017929.14	ENSMUST00000109221.9	4210	9	41515	2756	41515	-2756	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACGCACAAAGGCCTTCG	NA	NA	NA	NA	NA	NA	NA	NA	167149588	167143119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_167143404_167143929_167144032_167146915_167147039_167147579_167147768_167148510_167148628_167149463
ONT_simulated_read_10491456	chr7	+	713	1	ISM	ENSMUSG00000030682.5	ENSMUST00000032920.5	1974	6	0	3536	0	-3025	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCGGGGGAACTGGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	126575085	126575798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_126575100_126575800
ONT_simulated_read_10491804	chrX	-	285	3	ISM	ENSMUSG00000071708.12	ENSMUST00000112529.8	3717	11	30979	12192	30979	-12192	internal_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGTGATTAATGATTTGA	NA	NA	NA	NA	NA	NA	NA	NA	156244304	156239042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_156239105_156243322_156243413_156244171
ONT_simulated_read_10493376	chr10	+	362	1	ISM	ENSMUSG00000003068.18	ENSMUST00000003152.14	2566	10	551	13967	551	-13960	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAATCTACCAGCCGCGCC	NA	NA	NA	NA	NA	NA	NA	NA	79952187	79952549	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_79952200_79952500
ONT_simulated_read_10494107	chr14	+	1199	2	ISM	ENSMUSG00000039357.3	ENSMUST00000048016.3	4163	3	9	4752	9	-4752	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTCGGCTGAATGCCGA	NA	NA	NA	NA	NA	NA	NA	NA	20745044	20746332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_20745767_20745855
ONT_simulated_read_1049571	chr19	+	2109	10	FSM	ENSMUSG00000004231.16	ENST00000361791.7	3062	10	41	912	0	-897	multi-exon	TRUE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAAAGCCTGGAAGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	44745832	44825393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_44745876_44749316_44749483_44750126_44750325_44777215_44777302_44779121_44779242_44804346_44804523_44806864_44806992_44821604_44821707_44823829_44823917_44824389
ONT_simulated_read_10497053	chr19	-	576	4	ISM	ENSMUSG00000025204.11	ENSMUST00000171415.8	2142	5	440	1385	426	283	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTCCTTAAAAACCATTT	NA	NA	NA	NA	NA	NA	NA	NA	44543425	44538395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_44538660_44541136_44541293_44542107_44542208_44543369
ONT_simulated_read_10497280	chr1	-	881	5	ISM	ENSMUSG00000039342.6	ENST00000520309.5	4324	22	8698	37105	8698	-37105	internal_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTGAAAGAGGCTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	72729512	72719335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_72719360_72720968_72721150_72726883_72726988_72727708_72727873_72729104
ONT_simulated_read_10497734	chr7	-	2175	11	ISM	ENSMUSG00000030583.17	ENSMUST00000183096.8	7713	23	134224	5462	-3418	-3718	internal_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCACACAGCCCTGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	29070661	29025264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_29025324_29028409_29028554_29030722_29030970_29031649_29031816_29038380_29038603_29047696_29048125_29050117_29050237_29053479_29053608_29063595_29063734_29065975_29066228_29070389
ONT_simulated_read_10497757	chr6	-	2072	1	FSM	ENSMUSG00000052419.8	ENSMUST00000185219.2	1606	1	724	-1190	724	-935	mono-exon	FALSE	NA	NA	NA	NA	NA	222	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAACATTTTAGCTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	13870740	13868668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_13868700_13870700
ONT_simulated_read_10500185	chr16	-	238	3	ISM	ENSMUSG00000003528.16	ENSMUST00000003622.16	1666	9	570	2037	570	-2037	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGGATGCCCAAGGTAGGC	NA	NA	NA	NA	NA	NA	NA	NA	17745513	17745123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17745157_17745230_17745331_17745408
ONT_simulated_read_10500311	chr1	-	1292	3	ISM	ENSMUSG00000033124.17	ENSMUST00000040689.15	3764	16	8835	115	8835	-115	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	170	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCTGTGGGAGGTAAACT	NA	NA	NA	NA	NA	NA	NA	NA	75159732	75157624	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_75158576_75159235_75159382_75159537
ONT_simulated_read_10501965	chrX	-	1094	4	ISM	ENSMUSG00000057421.13	ENSMUST00000079987.13	2530	13	10354	171	10354	-171	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTCCATGTAGCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	94990165	94979111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016
ONT_simulated_read_10504906	chr6	+	571	4	ISM	ENSMUSG00000046947.13	ENSMUST00000051249.13	2287	7	9981	114	9981	-114	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCGGGTTATTTTAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	39560878	39564572	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_39560997_39562660_39562790_39563774_39563829_39564302
ONT_simulated_read_10505146	chr10	-	385	1	ISM	ENSMUSG00000032977.10	ENSMUST00000045454.9	2394	6	27312	1428	27312	-1428	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCAGAGTTGGGGTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	77324307	77323922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_77323900_77324300
ONT_simulated_read_10505450	chr16	+	1846	10	ISM	ENSMUSG00000022961.19	ENSMUST00000117633.8	8731	12	12437	907	12058	-895	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACGTAGATAGATTGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	91456830	91475188	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91475041
ONT_simulated_read_10506968	chr3	-	1109	10	ISM	ENSMUSG00000089911.5	ENSMUST00000029570.9	2782	12	11177	2632	11177	-2632	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAACTTAAAGAACTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	116445149	116427444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_116427535_116428551_116428650_116429926_116430040_116434035_116434108_116434895_116435010_116435358_116435578_116439014_116439130_116441430_116441559_116442167_116442231_116445052
ONT_simulated_read_10507333	chrX	-	627	1	NIC	ENSMUSG00000031176.9	novel	2176	5	NA	NA	4959	941	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCATTGATTTTTTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	9522303	9521676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_9521700_9522300
ONT_simulated_read_10507472	chr1	+	589	1	ISM	ENSMUSG00000049881.14	ENSMUST00000061537.12	1194	3	0	7296	0	-7212	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACAGTCACCTCGGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	157239921	157240510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_157239900_157240500
ONT_simulated_read_10507486	chr1	-	1575	1	FSM	ENSMUSG00000103630.2	ENSMUST00000191873.2	2085	1	0	510	0	-510	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCACGTGTATGTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	52695051	52693476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_52693500_52695100
ONT_simulated_read_10513108	chr19	-	1336	4	ISM	ENSMUSG00000074852.5	ENST00000404542.5	2280	10	104500	431	104500	-431	internal_fragment	FALSE	canonical	NA	NA	NA	NA	452	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAGTTGTAGTACAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	42897172	42776623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_42777552_42794728_42794876_42801318_42801465_42897057
ONT_simulated_read_10514676	chr3	+	1330	11	ISM	ENSMUSG00000027936.19	ENSMUST00000029545.15	2747	14	178	3164	14	-3159	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGCCTCTCCCCGCCACC	NA	NA	NA	NA	NA	NA	NA	NA	90161647	90168268	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_90161866_90164423_90164526_90164601_90164719_90165771_90165834_90166460_90166530_90166692_90166800_90166889_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003
ONT_simulated_read_10518743	chr9	+	858	7	ISM	ENSMUSG00000011958.18	ENSMUST00000165389.8	945	9	1698	-126	1698	126	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGTACAAGGGACTGTT	NA	NA	NA	NA	NA	NA	NA	NA	69904457	69914523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69914345
ONT_simulated_read_10519171	chr9	-	672	1	ISM	ENSMUSG00000042757.17	ENSMUST00000049452.15	3574	5	208047	1142	125038	-311	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTATGACCCCACAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	103361959	103361287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_103361300_103362000
ONT_simulated_read_10521463	chr9	+	1104	5	ISM	ENSMUSG00000032531.16	ENSMUST00000035121.14	4328	10	10663	1646	10663	-1641	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATGCTGTGCCTCACATC	NA	NA	NA	NA	NA	NA	NA	NA	102605529	102608971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
ONT_simulated_read_10522122	chr3	+	757	7	ISM	ENSMUSG00000028161.18	ENST00000507176.5	1974	13	-21	45322	0	-45320	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAACAGGCTTCCCGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	136376530	136596220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_136376663_136574362_136574488_136581849_136581962_136583390_136583537_136587161_136587302_136593707_136593786_136596196
ONT_simulated_read_10522314	chrX	-	1097	9	ISM	ENSMUSG00000067369.13	ENST00000372935.5	1718	13	14087	0	4645	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGACACCCAGGTTGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	133163617	133125291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133140930_133141103_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533
ONT_simulated_read_10529101	chr14	-	268	2	ISM	ENSMUSG00000021928.10	ENST00000378272.9	427	3	12937	0	12868	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	162	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGATTCCCAAGAGGCTA	NA	NA	NA	NA	NA	NA	NA	NA	61584890	61578655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_61578854_61584820
ONT_simulated_read_10529349	chr14	+	390	1	FSM	ENSMUSG00000114500.2	ENSMUST00000224747.2	943	1	0	553	0	-553	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGAGAGAATTATTCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	57102869	57103259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_57102900_57103300
ONT_simulated_read_10532267	chr11	-	574	1	Genic_Genomic	ENSMUSG00000057113.14	novel	NA	NA	NA	NA	10219	7	mono-exon	FALSE	NA	NA	NA	NA	NA	1855	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTGGATAGTGTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	33102853	33102279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr11_-_33102300_33102900
ONT_simulated_read_10536254	chr2	-	1343	1	NIC	ENSMUSG00000038705.14	novel	4121	10	NA	NA	33611	-1633	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAAATCAAATTTATAGT	NA	NA	NA	NA	NA	NA	NA	NA	180896217	180894874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_180894900_180896200
ONT_simulated_read_10536256	chr9	+	439	5	ISM	ENSMUSG00000025648.19	ENST00000383734.6	1409	13	19272	0	19272	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACCTCTGTCAGAGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	108840253	108859458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108840373_108856587_108856718_108856812_108856876_108857961_108858027_108859396
ONT_simulated_read_10536500	chr6	-	940	2	ISM	ENSMUSG00000039159.17	ENSMUST00000094543.3	975	5	82725	-587	82725	587	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCATGTCTTTTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	30221796	30214272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_30215083_30221666
ONT_simulated_read_1053919	chr2	+	1016	1	FSM	ENSMUSG00000109946.2	ENSMUST00000209765.2	1898	1	0	882	0	-882	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTAGGAGGAAAGCCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	27332335	27333351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_27332300_27333400
ONT_simulated_read_10541430	chr11	-	1317	9	ISM	ENSMUSG00000020289.16	ENSMUST00000109389.9	1642	12	17269	0	17269	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGGCAGCATGCCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	32200278	32182950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_32183117_32183903_32184097_32184731_32184922_32186787_32186918_32187299_32187407_32189796_32189954_32191797_32191936_32198144_32198227_32200124
ONT_simulated_read_10541892	chr6	+	224	1	FSM	ENSMUSG00000089936.2	ENSMUST00000160032.2	288	1	0	64	0	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCCAATGTGCTGATTG	NA	NA	NA	NA	NA	NA	NA	NA	119982958	119983182	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_119983000_119983200
ONT_simulated_read_10544135	chr12	-	320	1	ISM	ENSMUSG00000002799.7	ENST00000331782.8	5080	26	20450	1267	20409	-1229	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGGGACTCCCCAGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	112872987	112872667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_112872700_112873000
ONT_simulated_read_10544928	chr12	+	648	4	ISM	ENSMUSG00000057469.9	ENSMUST00000020908.9	2418	7	9284	1127	8974	-1127	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAATCAGCTCTCGAGATA	NA	NA	NA	NA	NA	NA	NA	NA	16870261	16875626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_16870386_16872093_16872209_16874570_16874719_16875365
ONT_simulated_read_10545641	chr1	-	497	1	ISM	ENSMUSG00000026544.7	ENSMUST00000027826.7	1410	2	1165	537	1165	-537	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGGAAACAGAAGGATAGG	NA	NA	NA	NA	NA	NA	NA	NA	172459364	172458867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_172458900_172459400
ONT_simulated_read_10545829	chr4	+	1312	1	FSM	ENSMUSG00000073775.5	ENSMUST00000102738.4	1629	1	0	317	0	-317	mono-exon	FALSE	NA	NA	NA	NA	NA	381	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTTAGCATAAGCTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	108704981	108706293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_108705000_108706300
ONT_simulated_read_10546449	chrX	-	322	1	ISM	ENSMUSG00000090110.9	ENST00000369479.1	876	3	9	5916	9	-5703	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCAAGGACTTGGTGCCG	NA	NA	NA	NA	NA	NA	NA	NA	74454700	74454378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_74454400_74454700
ONT_simulated_read_10547502	chr6	-	1345	11	ISM	ENSMUSG00000030272.16	ENSMUST00000032409.15	1496	12	2004	0	2004	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCGTTTGCTCAAATAGC	NA	NA	NA	NA	NA	NA	NA	NA	113318941	113311084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113311370_113311474_113311593_113313134_113313223_113313318_113313398_113314153_113314267_113315071_113315148_113315240_113315368_113316245_113316385_113316467_113316543_113317252_113317385_113318828
ONT_simulated_read_10547988	chr10	-	690	1	ISM	ENSMUSG00000032834.12	ENSMUST00000042556.11	3872	21	13019	532	13019	-532	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGGCTGGCCAGGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	78007964	78007274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_78007300_78008000
ONT_simulated_read_10549090	chr7	-	874	1	NIC	ENSMUSG00000047649.10	novel	2239	3	NA	NA	1464	-1130	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACATGGGCTCCAGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	19091942	19091068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_19091100_19091900
ONT_simulated_read_10549236	chr5	+	553	4	ISM	ENSMUSG00000079109.12	ENST00000644110.1	2262	12	14721	-46	14721	46	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGAAGGTTTTAAGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	143864992	143868023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_143865085_143865759_143865861_143865998_143866169_143867833
ONT_simulated_read_10551963	chr16	+	1217	10	ISM	ENSMUSG00000022761.13	ENSMUST00000231292.2	2491	20	11915	546	11915	-546	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTATTACGGCTTCTACA	NA	NA	NA	NA	NA	NA	NA	NA	17338781	17343120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102
ONT_simulated_read_10552075	chr16	+	892	9	ISM	ENSMUSG00000039427.15	ENST00000684190.1	1368	12	1550	830	1532	-39	internal_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTCAAGGATGCTGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	5053033	5061588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_5053131_5054183_5054333_5056508_5056599_5056919_5057031_5057769_5057892_5058322_5058383_5059149_5059261_5060352_5060468_5061551
ONT_simulated_read_10553173	chr16	-	1459	1	ISM	ENSMUSG00000022521.11	ENSMUST00000023165.9	10820	31	127800	3411	127216	-1038	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAGCAACAACAAAATAGTG	NA	NA	NA	NA	NA	NA	NA	NA	3904061	3902602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_3902600_3904100
ONT_simulated_read_10557348	chr4	+	1078	5	ISM	ENSMUSG00000028788.15	ENSMUST00000165853.2	3382	6	18443	2039	-383	14	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAAAGAAATCCCTCTATT	NA	NA	NA	NA	NA	NA	NA	NA	129732943	129741757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_129733472_129736462_129736556_129738854_129738986_129740257_129740333_129741506
ONT_simulated_read_10558268	chr14	-	918	1	ISM	ENSMUSG00000048922.19	ENSMUST00000150006.9	3568	15	37820	773	37589	-749	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTTAGACAGCAGGGGAT	NA	NA	NA	NA	NA	NA	NA	NA	67915470	67914552	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_67914600_67915500
ONT_simulated_read_10558969	chr9	-	186	3	ISM	ENSMUSG00000002032.18	ENST00000442938.6	1033	7	51	3216	-26	-3216	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTCAGACCTGGGCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	44710539	44709702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44709730_44709960_44710058_44710477
ONT_simulated_read_10560170	chr6	+	403	3	ISM	ENSMUSG00000057604.10	ENSMUST00000032376.6	1730	6	0	19841	0	-19835	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGCCACTCTCACCGCCA	NA	NA	NA	NA	NA	NA	NA	NA	112250718	112287545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_112250934_112282009_112282099_112287446
ONT_simulated_read_10560515	chr5	-	2045	12	NIC	ENSMUSG00000029207.17	novel	6526	17	NA	NA	166380	-5695	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCCTAACGCAGCCAATGT	NA	NA	NA	NA	NA	NA	NA	NA	66609626	66464925	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66549615_66549679_66557418_66557628_66608810
ONT_simulated_read_10560694	chr7	-	1020	7	ISM	ENSMUSG00000051007.16	ENSMUST00000106008.3	1898	8	2263	742	2196	552	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATTTTTATATTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	140991786	140988448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140989854_140990690_140990799_140990898_140991005_140991710
ONT_simulated_read_10563609	chr8	-	391	1	ISM	ENSMUSG00000065954.12	ENSMUST00000084030.6	7788	13	18619	27981	-1015	-22934	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAGCAAGCTAAGAAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	25672939	25672548	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_25672500_25672900
ONT_simulated_read_10565183	chrX	+	428	1	FSM	ENSMUSG00000083411.4	ENSMUST00000117119.2	347	1	0	-81	0	81	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGTAAGTCTCAGATAG	NA	NA	NA	NA	NA	NA	NA	NA	70847293	70847721	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_70847300_70847700
ONT_simulated_read_10565965	chr11	-	753	1	ISM	ENSMUSG00000018501.18	ENSMUST00000101066.10	8852	45	120514	823	41790	548	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAGGAGCAACACAACTGT	NA	NA	NA	NA	NA	NA	NA	NA	62208827	62208074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_62208100_62208800
ONT_simulated_read_10567402	chr13	+	816	4	ISM	ENSMUSG00000021218.11	ENST00000380181.7	1276	10	23664	-321	23664	-305	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	262	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGTTCAACGTTTTCTCTA	NA	NA	NA	NA	NA	NA	NA	NA	3611941	3615515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_3612038_3614539_3614685_3614858_3614914_3614995
ONT_simulated_read_10568483	chrX	-	794	3	ISM	ENSMUSG00000031214.14	ENST00000679748.1	2876	23	326556	81	326556	-81	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTCCTACTTTCTCGCAG	NA	NA	NA	NA	NA	NA	NA	NA	97607286	97601310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_97602012_97603191_97603234_97607235
ONT_simulated_read_10569428	chr14	-	1647	10	ISM	ENSMUSG00000063142.16	ENSMUST00000163322.3	3162	26	367291	-138	75522	138	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGCATATGTATGATAGT	NA	NA	NA	NA	NA	NA	NA	NA	23486081	23358944	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_23359333_23361716_23361836_23364190_23364386_23380907_23381039_23387012_23387127_23413868_23414062_23417506_23417732_23423205_23423330_23436327_23436422_23486017
ONT_simulated_read_10571532	chr3	+	333	1	NIC	ENSMUSG00000028137.10	novel	2505	14	NA	NA	0	-13521	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCAGTCCCCTAGCCCCT	NA	NA	NA	NA	NA	NA	NA	NA	94385641	94385974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_+_94385600_94386000
ONT_simulated_read_10572069	chr10	+	712	5	ISM	ENSMUSG00000039031.17	ENSMUST00000039557.9	3651	15	70	58027	70	-58027	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTCTGAAACAGACATCAA	NA	NA	NA	NA	NA	NA	NA	NA	26648542	26736617	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_26648693_26721927_26722125_26725870_26726107_26730869_26730934_26736552
ONT_simulated_read_10572654	chr11	-	674	4	ISM	ENSMUSG00000041189.10	ENSMUST00000045971.9	2155	11	3034	1096	3034	-1096	internal_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCCTCAGGAGCTACGAG	NA	NA	NA	NA	NA	NA	NA	NA	69683735	69675957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69676024_69676532_69676706_69677706_69677931_69683524
ONT_simulated_read_10572782	chr18	+	902	2	ISM	ENSMUSG00000044646.16	ENSMUST00000167921.2	2147	3	0	8875	0	-8875	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGAAGACCCTCCTTATC	NA	NA	NA	NA	NA	NA	NA	NA	76192528	76270639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_76192689_76269897
ONT_simulated_read_10572980	chrX	-	1345	11	ISM	ENSMUSG00000031169.14	ENSMUST00000089403.10	1854	14	2683	3	2683	-3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACAGGCTCGGTTTTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	8070057	8060091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8067896_8067912_8069397_8069529_8069607_8069790_8070030
ONT_simulated_read_10573764	chr2	-	424	1	ISM	ENSMUSG00000040479.13	ENSMUST00000099709.10	3512	31	42341	276	16904	-273	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGGACTTTCAAAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	91763868	91763444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_91763400_91763900
ONT_simulated_read_10574774	chr11	-	738	6	ISM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	13540	1144	6685	-102	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGGCAGGAGATGAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	60688551	60680073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350
ONT_simulated_read_10574878	chr11	+	1433	5	ISM	ENSMUSG00000020790.15	ENST00000570535.5	4627	25	69769	43	69769	-43	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGACTGGACCTCAGCAC	NA	NA	NA	NA	NA	NA	NA	NA	72650741	72659317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_72650833_72651065_72651191_72652188_72652336_72655602_72655694_72658338
ONT_simulated_read_10578999	chr7	-	1319	7	ISM	ENSMUSG00000070426.13	ENSMUST00000106953.8	2545	9	20784	-195	20784	179	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAGAAGAGCTCAGACGG	NA	NA	NA	NA	NA	NA	NA	NA	101688899	101669143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756
ONT_simulated_read_10581237	chr4	-	282	4	ISM	ENSMUSG00000028849.18	ENST00000373150.8	3172	18	22584	795	22584	-795	internal_fragment	FALSE	canonical	NA	NA	NA	NA	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAGTCTGGGTCGCACAG	NA	NA	NA	NA	NA	NA	NA	NA	126127434	126126755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126126855_126126968_126127060_126127157_126127201_126127385
ONT_simulated_read_10584292	chr1	+	2705	16	ISM	ENSMUSG00000026074.16	ENST00000456652.5	3835	24	98386	226	98386	-226	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGGACAGAGAAGAAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	40039053	40064423	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_40039135_40039690_40039910_40043966_40044074_40045833_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ONT_simulated_read_10586345	chr5	+	253	1	FSM	ENSMUSG00000107211.2	ENSMUST00000202263.2	970	1	0	717	0	-717	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTCTAGTGACTGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	32577346	32577599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_32577300_32577600
ONT_simulated_read_10587195	chr11	-	1349	11	ISM	ENSMUSG00000040667.12	ENSMUST00000108531.8	2453	17	15360	0	15341	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCTTTACAATTAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	70845439	70833897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326
ONT_simulated_read_10589649	chr3	-	1054	8	ISM	ENSMUSG00000034109.16	ENSMUST00000167078.8	2902	16	61895	429	61887	-429	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAAGAAGACGGGGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	75802349	75785394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_75785485_75785952_75786025_75793581_75793651_75793979_75794148_75797828_75797939_75799195_75799279_75800089_75800344_75802141
ONT_simulated_read_10589979	chr18	+	485	3	ISM	ENSMUSG00000024430.15	ENST00000327201.10	1083	4	7	1187	0	-94	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGCCACCTGCACCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	12874411	12887010	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_12874459_12883716_12884062_12886917
ONT_simulated_read_10592962	chr2	-	375	1	FSM	ENSMUSG00000075419.5	ENSMUST00000100219.5	2104	1	0	1729	0	-1729	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTCGCCGTGGTGTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	30176346	30175971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_30176000_30176300
ONT_simulated_read_10595625	chr16	-	2527	4	ISM	ENSMUSG00000003166.21	ENSMUST00000117082.2	2987	10	41799	-465	41799	465	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGAGGCCCAGTGGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	17667658	17658708	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454
ONT_simulated_read_10595810	chr5	+	430	1	ISM	ENSMUSG00000023104.10	ENSMUST00000023867.8	4995	11	18188	498	18188	-498	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGCTGGGGCTGGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	134629731	134630161	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_134629700_134630200
ONT_simulated_read_10599363	chr6	+	1217	9	ISM	ENSMUSG00000029802.14	ENSMUST00000114294.8	2178	16	18	17735	18	-17735	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAAACTTGCTCGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	58617566	58651761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_58617613_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552
ONT_simulated_read_10599930	chr12	-	1681	2	ISM	ENSMUSG00000021127.8	ENSMUST00000165114.2	1934	3	2465	58	2461	0	3prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTTCCCCAATTCATAT	NA	NA	NA	NA	NA	NA	NA	NA	80157307	80155529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_80156206_80156302
ONT_simulated_read_10602536	chr12	+	308	3	ISM	ENSMUSG00000020598.17	ENST00000351718.8	5774	25	119	61154	119	-59276	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCTACCAGTGCACTGCA	NA	NA	NA	NA	NA	NA	NA	NA	44579365	44586348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_44579443_44584033_44584140_44586223
ONT_simulated_read_10604031	chr14	-	791	1	ISM	ENSMUSG00000000776.14	ENSMUST00000000793.13	2016	9	3900	0	3743	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTAAGTGGTTCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	70676987	70676196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_70676200_70677000
ONT_simulated_read_10604887	chr7	-	634	6	ISM	ENSMUSG00000030603.17	ENSMUST00000140053.3	1244	11	2577	672	2577	-672	internal_fragment	FALSE	canonical	NA	NA	NA	NA	434	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCACTCCCTGACCGTCGC	NA	NA	NA	NA	NA	NA	NA	NA	27746896	27741853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790
ONT_simulated_read_10605894	chr12	-	3041	19	ISM	ENSMUSG00000035247.17	ENSMUST00000042052.9	8988	43	2022	32870	2022	-32870	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTGAAACTTCATTAAT	NA	NA	NA	NA	NA	NA	NA	NA	51874297	51823374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_51823414_51829264_51829371_51830964_51831060_51832591_51832739_51834627_51834763_51836954_51837032_51837134_51837399_51838002_51838226_51841196_51841368_51841521_51841661_51844619_51844795_51845436_51845552_51847497_51847597_51847678_51847756_51848946_51849218_51849317_51849600_51850451_51850680_51853144_51853380_51874134
ONT_simulated_read_1060605	chr7	+	835	6	ISM	ENSMUSG00000063065.14	ENST00000395200.5	960	7	1038	-1	152	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAACAGACACCCCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	126359920	126364017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_126360086_126362206_126362397_126362912_126363028_126363405_126363538_126363705_126363816_126363894
ONT_simulated_read_10606499	chr1	+	1077	4	ISM	ENSMUSG00000040918.13	ENSMUST00000044021.12	3571	6	207	3295	0	-1428	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACTTGGGGAGAAATGAC	NA	NA	NA	NA	NA	NA	NA	NA	164076821	164089659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_164077026_164084315_164084919_164088360_164088587_164089615
ONT_simulated_read_10607336	chr17	-	314	1	ISM	ENSMUSG00000023905.16	ENSMUST00000024698.10	984	4	1446	264	1398	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	278	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCAGTCTGGCTGACT	NA	NA	NA	NA	NA	NA	NA	NA	23894996	23894682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_23894700_23895000
ONT_simulated_read_1061134	chr13	+	844	8	ISM	ENSMUSG00000021583.8	ENST00000296754.7	2940	19	23637	19346	23637	-19346	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTGTGCATTACGCGGA	NA	NA	NA	NA	NA	NA	NA	NA	74811585	74819488	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_74811683_74812227_74812342_74814217_74814350_74814562_74814695_74814836_74814909_74816076_74816232_74817518_74817599_74819426
ONT_simulated_read_10611566	chr3	-	1739	13	ISM	ENSMUSG00000028099.9	ENSMUST00000154679.8	2406	15	3421	140	1960	-140	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTCGGCTGCAGATTCT	NA	NA	NA	NA	NA	NA	NA	NA	96631336	96618978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112
ONT_simulated_read_10612081	chr19	-	155	1	ISM	ENSMUSG00000024963.13	ENSMUST00000179118.2	840	6	4203	4	4203	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGTCCGATTCGGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	6965437	6965282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6965300_6965400
ONT_simulated_read_10614228	chr19	+	1091	11	ISM	ENSMUSG00000071646.10	ENSMUST00000096240.3	3135	18	2159	3953	2159	-3953	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAGACCCCTACCCAAC	NA	NA	NA	NA	NA	NA	NA	NA	8921397	8925714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620
ONT_simulated_read_10614426	chrX	-	918	1	ISM	ENSMUSG00000079350.3	ENSMUST00000070141.7	1646	4	8693	465	8693	-465	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCAGAGGCATTGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	153770153	153769235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_153769200_153770200
ONT_simulated_read_10615686	chr14	-	1766	1	NIC	ENSMUSG00000021798.15	novel	5119	14	NA	NA	58919	-1060	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATTGTGTAGTAGGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	34251507	34249741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_34249700_34251500
ONT_simulated_read_10616598	chrX	+	1183	8	ISM	ENSMUSG00000031256.12	ENSMUST00000033609.9	4502	14	7064	2449	7046	-1676	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAAGGAAAGCAGTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	132967009	132985119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
ONT_simulated_read_10619054	chr17	-	1187	10	FSM	ENSMUSG00000063576.13	ENST00000244670.12	1821	10	87	547	0	-540	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTAGGAAGTTTATGCTG	NA	NA	NA	NA	NA	NA	NA	NA	46991729	46986018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988857_46989035_46989206_46989420_46991627
ONT_simulated_read_10619608	chr16	-	450	3	ISM	ENSMUSG00000049916.13	ENSMUST00000093336.8	1266	8	3600	5000	3600	-4999	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACCACAACCTGTCACCA	NA	NA	NA	NA	NA	NA	NA	NA	16939370	16936261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_16936377_16938819_16938944_16939159
ONT_simulated_read_10620586	chr17	+	307	1	ISM	ENSMUSG00000060149.8	ENSMUST00000232328.2	1598	4	21358	461	21358	-461	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTATGCACGACACAGTG	NA	NA	NA	NA	NA	NA	NA	NA	17193171	17193478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_17193200_17193500
ONT_simulated_read_10624190	chr1	-	207	2	ISM	ENSMUSG00000025982.14	ENSMUST00000027127.14	6195	25	15225	22497	15225	-22497	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGTGAAACACCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	55051415	55046824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_55046877_55051260
ONT_simulated_read_10624196	chr19	+	834	7	ISM	ENSMUSG00000024817.14	ENSMUST00000025739.14	3536	16	47991	4460	47991	-4460	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGCAGCGCCTGATCAG	NA	NA	NA	NA	NA	NA	NA	NA	30055903	30066662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_30056048_30057238_30057344_30060133_30060241_30063645_30063809_30064575_30064717_30065878_30065976_30066585
ONT_simulated_read_10624920	chr11	+	301	3	ISM	ENSMUSG00000039850.17	ENST00000520284.5	484	4	1	519	1	-519	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGAGGAGACACATTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	119382610	119393134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_119382783_119391416_119391530_119393118
ONT_simulated_read_10626657	chr18	-	701	9	ISM	ENSMUSG00000053644.14	ENST00000637272.1	1489	16	15294	267	15294	-267	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTATCTTTACCAAAGATT	NA	NA	NA	NA	NA	NA	NA	NA	56680009	56664827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670363_56671772_56671815_56675296_56675395_56678036_56678115_56679975
ONT_simulated_read_10627310	chr10	-	728	6	ISM	ENSMUSG00000034667.9	ENSMUST00000039810.8	5992	25	18681	17032	18681	-17032	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCGCAGGATGAAGAGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	121443540	121440316	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415
ONT_simulated_read_1062774	chr10	-	1985	2	ISM	ENSMUSG00000019853.7	ENSMUST00000020000.7	2535	4	1662	0	1473	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTGGTTCTTGGATCAT	NA	NA	NA	NA	NA	NA	NA	NA	18420162	18415245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_18417081_18420012
ONT_simulated_read_10627798	chr9	-	1263	1	ISM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	8316	0	8316	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGAACCTTGTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	35473378	35472115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_35472100_35473400
ONT_simulated_read_10628142	chr17	-	483	3	ISM	ENSMUSG00000036438.15	ENSMUST00000234406.2	842	5	11145	152	11145	-152	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	2981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGTGGCTTACTCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	87743139	87741244	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_87741484_87742503_87742640_87743031
ONT_simulated_read_10633467	chr9	-	680	1	ISM	ENSMUSG00000025245.15	ENSMUST00000026274.14	4070	10	17538	2396	17538	-2396	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGATGGACTCTGAGTAC	NA	NA	NA	NA	NA	NA	NA	NA	123529152	123528472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_123528500_123529200
ONT_simulated_read_10633519	chr1	-	1333	1	ISM	ENSMUSG00000026491.14	ENST00000366508.5	8234	34	52852	328	52852	-260	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGAGTGGCCGTCCGGG	NA	NA	NA	NA	NA	NA	NA	NA	179574051	179572718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_179572700_179574100
ONT_simulated_read_10636014	chr10	-	688	5	ISM	ENSMUSG00000000902.14	ENST00000263121.12	1352	8	11183	233	11183	-233	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCTCAGACTGCCTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	75746116	75732853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987
ONT_simulated_read_10637329	chr1	-	206	1	ISM	ENSMUSG00000054770.17	ENSMUST00000164963.8	2114	4	13299	1479	13299	-1332	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGCTTCCCCCGATGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	57995944	57995738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_57995700_57995900
ONT_simulated_read_10637648	chr15	+	1144	1	ISM	ENSMUSG00000037075.8	ENSMUST00000036904.7	4348	2	10908	1110	10908	-1110	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGTCACGTAAGGGCACCA	NA	NA	NA	NA	NA	NA	NA	NA	58771985	58773129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_58772000_58773100
ONT_simulated_read_10639197	chr10	+	1084	6	NIC	ENSMUSG00000019978.17	novel	3748	17	NA	NA	8994	96	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCAATTAAAAGCATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	25377888	25398718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_+_25378037_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
ONT_simulated_read_10639229	chr3	-	1505	1	FSM	ENSMUSG00000093553.2	ENSMUST00000176742.2	2831	1	786	540	786	-540	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTTTACCTTTCACTT	NA	NA	NA	NA	NA	NA	NA	NA	96152910	96151405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_96151400_96152900
ONT_simulated_read_1064179	chr1	+	850	4	ISM	ENSMUSG00000026172.13	ENSMUST00000113732.2	1679	8	0	1839	0	-1774	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCGACGTCGGCCACTGGA	NA	NA	NA	NA	NA	NA	NA	NA	74627532	74629509	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_74627764_74628644_74629038_74629118_74629259_74629423
ONT_simulated_read_10645615	chrX	+	697	8	ISM	ENSMUSG00000009995.18	ENSMUST00000124200.8	1742	9	171	990	-70	0	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCGGGCAGAGAACAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	73326526	73332764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332710
ONT_simulated_read_10646573	chr17	-	2988	7	ISM	ENSMUSG00000061665.8	ENSMUST00000233476.2	3157	16	59854	-754	59819	754	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGTATGCTATTTAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	43127461	43105014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_43107261_43109485_43109550_43116050_43116227_43118804_43118907_43119621_43119735_43126835_43126979_43127317
ONT_simulated_read_1064693	chr5	-	648	4	ISM	ENSMUSG00000037235.14	ENSMUST00000042701.13	3872	6	3340	2950	3340	-258	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTACCCTTCGGTCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	34341714	34334180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_34334494_34334941_34335105_34336153_34336269_34341657
ONT_simulated_read_10647481	chr8	-	2194	6	ISM	ENSMUSG00000031539.7	ENSMUST00000163739.3	3417	9	8420	582	8420	-582	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGCTTGGAGGGAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	23287200	23277951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_23279470_23280896_23281042_23281260_23281469_23282733_23282868_23283081_23283168_23287097
ONT_simulated_read_10648851	chr18	-	886	7	ISM	ENSMUSG00000024370.18	ENSMUST00000025228.12	2084	17	14561	0	14561	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATACTACTGTTCTTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	34770227	34764003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_34764355_34767135_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111
ONT_simulated_read_10650745	chr7	-	861	5	ISM	ENSMUSG00000073968.5	ENSMUST00000082175.7	2388	7	2816	1538	2759	-1531	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGCAGCTAGAGCCAATC	NA	NA	NA	NA	NA	NA	NA	NA	102333718	102328326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_102328344_102328880_102328904_102329343_102329605_102330869_102330966_102333254
ONT_simulated_read_10650897	chr9	-	1737	13	ISM	ENSMUSG00000032507.16	ENSMUST00000035090.14	3464	15	23269	1592	23269	-1592	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTAAGCTGGGTGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	113832560	113807366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_113808009_113808525_113808739_113813052_113813110_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818505_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509
ONT_simulated_read_10651322	chr8	+	568	6	ISM	ENSMUSG00000031505.12	ENSMUST00000177955.8	1307	10	0	3914	0	-3914	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTGGCCTCTCATCTC	NA	NA	NA	NA	NA	NA	NA	NA	11547505	11559373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321
ONT_simulated_read_10653152	chr13	+	579	8	ISM	ENSMUSG00000003992.16	ENST00000401636.1	891	14	-6	17933	0	-17933	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCAAAAGCTTATTACTC	NA	NA	NA	NA	NA	NA	NA	NA	91609299	91823245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91812236_91812297_91817794_91817862_91818512_91818584_91823152
ONT_simulated_read_10654653	chr10	+	674	4	ISM	ENSMUSG00000019794.14	ENSMUST00000019929.13	1774	11	33772	0	33772	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGTTTCAATTTAGCAC	NA	NA	NA	NA	NA	NA	NA	NA	7635535	7638913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_7635588_7636498_7636634_7637006_7637134_7638553
ONT_simulated_read_10655221	chr16	-	4163	11	ISM	ENSMUSG00000022799.5	ENSMUST00000023487.5	7964	12	72926	3099	72926	-3099	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAGATAGAATGAGACCAT	NA	NA	NA	NA	NA	NA	NA	NA	38460710	38421800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_38424178_38426963_38427242_38429264_38429814_38431118_38431182_38438504_38438630_38441264_38441455_38444173_38444317_38444908_38445017_38445912_38445996_38457258_38457404_38460608
ONT_simulated_read_10659135	chr13	+	1308	6	ISM	ENSMUSG00000039219.19	ENSMUST00000110534.8	5864	24	100398	12119	100391	-12119	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCGCTCTGCACAGAAAACA	NA	NA	NA	NA	NA	NA	NA	NA	14338774	14361828	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_14338935_14339351_14339528_14344503_14344765_14355804_14355890_14358891_14359091_14361401
ONT_simulated_read_10659814	chr6	-	1683	5	ISM	ENSMUSG00000036667.15	ENST00000414990.3	2242	7	-1	1870	-1	-1870	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGTTCCCCCCACATACT	NA	NA	NA	NA	NA	NA	NA	NA	42656355	42652178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_42652314_42653724_42653965_42654263_42654478_42655003_42655102_42655359
ONT_simulated_read_1066087	chr11	-	295	2	ISM	ENSMUSG00000020718.13	ENST00000539111.7	1287	8	6597	-26	6597	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	106663553	106659078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106659298_106663477
ONT_simulated_read_10661723	chr17	-	642	1	ISM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	1766	15653	1766	-15653	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGCAGGCTTTAATGC	NA	NA	NA	NA	NA	NA	NA	NA	79242729	79242087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_79242100_79242700
ONT_simulated_read_10662175	chr13	-	125	1	ISM	ENSMUSG00000021676.11	ENSMUST00000068603.8	5847	36	231683	33014	47732	-32276	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGAGGGCGAGAATGAG	NA	NA	NA	NA	NA	NA	NA	NA	95796820	95796695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_95796700_95796800
ONT_simulated_read_10662381	chr4	-	596	3	ISM	ENSMUSG00000050390.13	ENSMUST00000106051.8	5049	7	2468	4349	571	-2758	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATGTGGTGGCCCTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	129119236	129117719	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129118110_129118190_129118305_129119144
ONT_simulated_read_10662822	chr17	-	2433	1	NIC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	25935	-599	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGCTTTATTCCAGCGGT	NA	NA	NA	NA	NA	NA	NA	NA	22507883	22505450	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_22505400_22507900
ONT_simulated_read_10663961	chr1	+	259	4	ISM	ENSMUSG00000026470.15	ENSMUST00000027743.13	4589	8	32788	3715	32755	3689	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCAGTGGTGTGCCATAGC	NA	NA	NA	NA	NA	NA	NA	NA	155067248	155077690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_155067301_155068964_155069072_155073086_155073182_155077685
ONT_simulated_read_10665249	chr15	-	364	2	ISM	ENSMUSG00000116295.2	ENSMUST00000229245.2	593	4	5886	0	5886	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATATTAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	97059237	97054909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_97055131_97059094
ONT_simulated_read_10665545	chr3	-	431	1	ISM	ENSMUSG00000027919.6	ENSMUST00000029527.6	925	2	1336	424	1336	-424	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAGACTTCAGACAAATG	NA	NA	NA	NA	NA	NA	NA	NA	92658309	92657878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_92657900_92658300
ONT_simulated_read_10666813	chr11	+	1245	9	ISM	ENSMUSG00000018398.19	ENSMUST00000108987.8	4436	10	12305	2842	12124	-594	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTGTTAAACCGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	53422877	53432080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_53422944_53425259_53425456_53425775_53425963_53426774_53426937_53427478_53427576_53427980_53428150_53428313_53428447_53428551_53428743_53432036
ONT_simulated_read_10670657	chr14	-	949	1	NIC	ENSMUSG00000021816.12	novel	3831	14	NA	NA	37757	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAAGGGTGTTATAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	20558751	20557802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_20557800_20558800
ONT_simulated_read_10670714	chrX	+	1086	8	ISM	ENSMUSG00000025261.19	ENST00000612484.4	13806	81	86095	6279	86095	-6279	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCCATCTTGCTGATGG	NA	NA	NA	NA	NA	NA	NA	NA	150704338	150711799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_150704415_150705327_150705461_150705691_150705895_150706474_150706603_150707657_150707758_150710626_150710786_150711148_150711395_150711758
ONT_simulated_read_1067277	chr1	+	836	5	ISM	ENSMUSG00000026622.16	ENSMUST00000027931.8	3227	8	66	6766	66	-6766	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGCATCCCCTACCGCTAC	NA	NA	NA	NA	NA	NA	NA	NA	191553621	191558396	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334
ONT_simulated_read_10673102	chr8	+	912	7	ISM	ENSMUSG00000003033.16	ENSMUST00000003117.15	2084	12	28	4468	-13	-3845	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCTTCATCCCACCCGA	NA	NA	NA	NA	NA	NA	NA	NA	72993889	73006761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_72994088_73000482_73000640_73002956_73003025_73003592_73003724_73004524_73004673_73005586_73005714_73006678
ONT_simulated_read_10673160	chr5	+	723	5	ISM	ENSMUSG00000042605.17	ENST00000616825.4	4513	23	425	42225	-131	-30442	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGAGCCCTGGGATGCAG	NA	NA	NA	NA	NA	NA	NA	NA	121849922	121910787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_121850340_121883785_121883823_121885472_121885533_121887141_121887293_121910729
ONT_simulated_read_10674194	chr18	+	509	5	ISM	ENSMUSG00000042660.9	ENSMUST00000049323.9	1619	7	1754	925	1754	-925	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCTACCTCTTCAACTGG	NA	NA	NA	NA	NA	NA	NA	NA	36895026	36895938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_36895131_36895218_36895307_36895407_36895588_36895710_36895811_36895901
ONT_simulated_read_10677170	chr11	-	436	1	ISM	ENSMUSG00000018287.13	ENSMUST00000018431.13	1159	7	5210	0	5061	0	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGTGGATACTAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	70555032	70554596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_70554600_70555000
ONT_simulated_read_10678054	chr5	-	307	1	ISM	ENSMUSG00000048450.11	ENSMUST00000063116.10	1935	2	2883	909	2883	-909	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCAGCGGTGGCTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	37979044	37978737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_37978700_37979000
ONT_simulated_read_1068039	chr7	-	723	1	ISM	ENSMUSG00000048920.9	ENSMUST00000061390.9	2827	3	4792	1972	4792	-1972	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCCGCGGCGCGCCAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	16545865	16545142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_16545100_16545900
ONT_simulated_read_10680670	chr2	-	731	8	ISM	ENSMUSG00000002105.16	ENSMUST00000073575.12	2469	10	4316	1141	2633	-58	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCTGCTTTCATTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	90896446	90893276	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895250_90895353_90895926_90896046_90896357
ONT_simulated_read_1068594	chr4	+	759	5	ISM	ENSMUSG00000028621.18	ENSMUST00000106756.9	1604	6	702	465	702	-465	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCTTAATCAGGGGTAC	NA	NA	NA	NA	NA	NA	NA	NA	106928066	106941536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_106928216_106931069_106931158_106934872_106934978_106938087_106938292_106941323
ONT_simulated_read_10687838	chr14	-	428	4	ISM	ENSMUSG00000032849.15	ENST00000646439.1	3842	30	177046	32220	177046	-32220	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCATCTCGGCCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	118766477	118753964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_118754001_118763623_118763816_118765362_118765464_118766378
ONT_simulated_read_10688736	chr7	-	631	1	NIC	ENSMUSG00000047371.8	novel	2231	3	NA	NA	517	-1446	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCATTTGACATGCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	126944043	126943412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_126943400_126944000
ONT_simulated_read_10689979	chr7	-	2357	18	ISM	ENSMUSG00000062444.16	ENST00000666973.1	3116	25	16393	-14	16393	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGATCTTCACCTAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	81126977	81110380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_81110550_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693
ONT_simulated_read_10691233	chr18	-	193	1	FSM	ENSMUSG00000117359.2	ENSMUST00000234092.2	444	1	0	251	0	-251	mono-exon	FALSE	NA	NA	NA	NA	NA	472	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTGGAATGGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	6760959	6760766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_6760800_6761000
ONT_simulated_read_10693780	chr7	-	634	6	ISM	ENSMUSG00000030533.17	ENSMUST00000032748.15	3260	20	535	9543	535	-9218	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCGGAGAGTCGTCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	79989432	79984585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_79984612_79986053_79986222_79986672_79986766_79988588_79988765_79989061_79989099_79989298
ONT_simulated_read_1069396	chr15	-	1641	12	ISM	ENSMUSG00000037458.16	ENSMUST00000110329.8	4217	13	4693	2182	4693	-803	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTGCACCCTCTTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	38514814	38490663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38507430_38507591_38514716
ONT_simulated_read_10694021	chr4	-	882	5	ISM	ENSMUSG00000028669.16	ENSMUST00000105851.9	1700	6	830	490	830	-490	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	214	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCTGTCATTGCTCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	135713745	135703260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_135703808_135704459_135704569_135706107_135706213_135713251_135713330_135713702
ONT_simulated_read_10694250	chr11	+	1017	6	ISM	ENSMUSG00000020463.16	ENSMUST00000020755.12	5125	16	32735	2103	32735	-2103	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTGTAAGAACCGG	NA	NA	NA	NA	NA	NA	NA	NA	29155624	29168694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_29155705_29159316_29159487_29161115_29161256_29161606_29161792_29163593_29163797_29168455
ONT_simulated_read_10694499	chr6	-	1283	1	FSM	ENSMUSG00000097656.2	ENSMUST00000180813.2	217	1	-190	-876	-190	876	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTACTCTCTGTGTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	57666824	57665541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_57665500_57666800
ONT_simulated_read_1069468	chr14	-	1263	1	NIC	ENSMUSG00000006288.9	novel	1842	10	NA	NA	8065	-718	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGTAGAAGCAGGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	51014887	51013624	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_51013600_51014900
ONT_simulated_read_106981	chr14	-	120	2	ISM	ENSMUSG00000002319.17	ENSMUST00000047131.16	3846	30	7043	2762	7043	-2762	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGCCTTCGCTCCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	55866098	55865618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55865689_55866048
ONT_simulated_read_10698684	chr17	-	938	1	Antisense	novelGene_ENSMUSG00000090115.8_AS_novelGene_ENSMUSG00000023984.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGAGCAGGTCCTGCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	47984267	47983329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr17_-_47983300_47984300
ONT_simulated_read_10701108	chr4	-	439	3	ISM	ENSMUSG00000028538.13	ENST00000372369.5	1035	11	167162	-54	167162	54	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACAGGAGCCTTCCCACC	NA	NA	NA	NA	NA	NA	NA	NA	117797698	117790189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_117790334_117797206_117797354_117797550
ONT_simulated_read_10701613	chr2	-	1093	4	ISM	ENSMUSG00000027305.10	ENSMUST00000028768.2	1451	5	2152	155	15	34	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAGAGCCTTTCTGTCTA	NA	NA	NA	NA	NA	NA	NA	NA	119491127	119486086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482
ONT_simulated_read_10703295	chr7	+	2121	18	ISM	ENSMUSG00000042105.19	ENSMUST00000043138.13	4734	20	47648	2208	-28538	-1325	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAACCAAGGCTCTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	128260731	128295941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_128260877_128265361_128265491_128265700_128265869_128265972_128266030_128269320_128269520_128270137_128270318_128271654_128271723_128277021_128277147_128278452_128278531_128279720_128279842_128281440_128281570_128283971_128284090_128286809_128287009_128292350_128292423_128293475_128293550_128293977_128294107_128295368_128295457_128295899
ONT_simulated_read_1071090	chr10	-	1242	8	ISM	ENSMUSG00000025417.9	ENST00000550465.5	1517	10	4858	0	4858	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAGTGCCTTGATCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	127042558	127034663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_127035014_127035181_127035286_127035457_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482
ONT_simulated_read_10710901	chr7	-	682	1	ISM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	18485	123	17556	16	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTAATCTTGCTGTCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	45026681	45025999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45026000_45026700
ONT_simulated_read_10712374	chr15	-	481	4	ISM	ENSMUSG00000022559.9	ENSMUST00000023219.9	1710	9	1345	927	1345	-927	internal_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAACTGCGCATGCTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	76421590	76420847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76421005_76421092_76421207_76421289_76421398_76421488
ONT_simulated_read_10713002	chr8	-	644	3	ISM	ENSMUSG00000001062.19	ENSMUST00000118279.2	2696	15	6897	3311	6897	-3311	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTGTACAGGAACGCACC	NA	NA	NA	NA	NA	NA	NA	NA	123973934	123972408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123972452_123972682_123972813_123973463
ONT_simulated_read_10716952	chr3	-	1445	1	ISM	ENSMUSG00000097204.3	ENSMUST00000180958.2	3467	2	3506	0	3506	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAACAAAAGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	96076224	96074779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_96074800_96076200
ONT_simulated_read_10718267	chr16	+	2081	11	FSM	ENSMUSG00000022867.12	ENST00000351097.9	2051	11	-29	-1	-29	1	multi-exon	TRUE	canonical	NA	NA	NA	NA	777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTGTAAGCAGGTATAT	NA	NA	NA	NA	NA	NA	NA	NA	76810674	76912869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_76811029_76830790_76830869_76834235_76834381_76845329_76845454_76847285_76847449_76852041_76852129_76856050_76856189_76907953_76908034_76910620_76910745_76911771_76911968_76912277
ONT_simulated_read_107189	chr17	+	1431	1	ISM	ENSMUSG00000043311.8	ENST00000375911.2	2347	2	38	1065	0	-1039	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGCTTACTTACTGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	35345361	35346792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35345400_35346800
ONT_simulated_read_10719334	chr16	-	953	5	ISM	ENSMUSG00000052516.20	ENST00000332191.12	4984	25	118758	9636	118758	-9636	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGAGGGAAGGGATGCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	73725062	73701292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_73701445_73703704_73703888_73712985_73713192_73717421_73717683_73724911
ONT_simulated_read_10720266	chr12	+	1279	7	ISM	ENSMUSG00000021144.15	ENSMUST00000069690.5	2697	20	33225	55	33225	-55	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCAGGGTTGGTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	113095167	113100738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_113095383_113095507_113095598_113096804_113096958_113097160_113097197_113099416_113099449_113099900_113100053_113100137
ONT_simulated_read_10720457	chr19	+	1222	8	ISM	ENSMUSG00000025157.9	ENSMUST00000026154.9	1821	11	4562	0	451	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	NA	NA	NA	NA	NA	NA	NA	NA	41926490	41932543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ONT_simulated_read_10720834	chr17	-	438	3	ISM	ENSMUSG00000014771.14	ENSMUST00000054450.7	1120	6	4394	0	4366	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTCAGTACCTCATAATT	NA	NA	NA	NA	NA	NA	NA	NA	15743169	15741836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_15742056_15742177_15742292_15743064
ONT_simulated_read_10725751	chr17	+	820	4	FSM	ENSMUSG00000023861.18	ENST00000621630.1	833	4	-85	98	0	67	multi-exon	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGTCTACACATAATTTC	NA	NA	NA	NA	NA	NA	NA	NA	8502627	8516393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_8502794_8515366_8515464_8515655_8515789_8515969
ONT_simulated_read_10725767	chr2	-	2261	1	ISM	ENSMUSG00000039449.15	ENSMUST00000035721.14	3522	10	27595	173	12728	-173	mono-exon	FALSE	NA	NA	NA	NA	NA	225	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTATACTATATATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	4629302	4627041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_4627000_4629300
ONT_simulated_read_10726154	chr3	-	326	4	ISM	ENSMUSG00000068762.12	ENSMUST00000106685.9	1153	8	985	2358	598	-2243	internal_fragment	FALSE	canonical	NA	NA	NA	NA	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGCAGGGGACAAGGTAG	NA	NA	NA	NA	NA	NA	NA	NA	107850080	107848520	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_107848601_107849448_107849550_107849648_107849731_107850017
ONT_simulated_read_10727548	chrX	+	1078	10	NIC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	0	-853	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCACAATAATATGCTTAA	NA	NA	NA	NA	NA	NA	NA	NA	74460302	74494461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_+_74460448_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289
ONT_simulated_read_10727640	chr1	-	1048	1	ISM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	56229	2231	56229	-2231	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCACTTACATAGCATTTA	NA	NA	NA	NA	NA	NA	NA	NA	79683257	79682209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_79682200_79683300
ONT_simulated_read_10727858	chr4	-	203	2	ISM	ENSMUSG00000003038.16	ENSMUST00000105893.8	973	6	1432	440	1432	-17	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCTATATTGTTAGCACA	NA	NA	NA	NA	NA	NA	NA	NA	133693320	133692740	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_133692885_133693261
ONT_simulated_read_10728018	chr2	-	1926	11	ISM	ENSMUSG00000027365.15	ENSMUST00000028843.12	6985	39	44782	25242	44782	-25242	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTGCTGTGTATGCAAAA	NA	NA	NA	NA	NA	NA	NA	NA	126673255	126658732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_126658865_126661756_126661884_126663083_126663259_126664389_126664669_126665895_126666025_126667331_126667476_126667553_126667710_126668634_126668864_126670929_126671211_126672048_126672184_126673116
ONT_simulated_read_10730529	chr18	-	332	1	ISM	ENSMUSG00000052713.10	ENSMUST00000064763.7	6095	10	101112	675	99561	-662	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTGTCATGTTGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	55022126	55021794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_55021800_55022100
ONT_simulated_read_10732374	chr2	+	163	2	ISM	ENSMUSG00000033068.17	ENSMUST00000094467.6	2540	14	129	18566	129	-17613	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCTGTTCATCTATGTTG	NA	NA	NA	NA	NA	NA	NA	NA	150591090	150595029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_150591154_150594929
ONT_simulated_read_10733486	chr4	+	715	5	ISM	ENSMUSG00000006442.11	ENSMUST00000006611.9	1338	7	0	789	0	-789	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	293	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCATCCTGTGCTGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	148675959	148678287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_148676244_148676500_148676622_148676938_148677032_148677744_148677899_148678224
ONT_simulated_read_10735021	chr12	-	275	1	Genic_Genomic	ENSMUSG00000021086.6	novel	NA	NA	NA	NA	83635	180	mono-exon	FALSE	NA	NA	NA	NA	NA	2132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAACATGGCCGTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	72148168	72147893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr12_-_72147900_72148200
ONT_simulated_read_10737151	chr11	-	702	3	ISM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	750	754	750	-54	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	228	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCAGGAGTATGATGAGT	NA	NA	NA	NA	NA	NA	NA	NA	120238167	120237270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120237360_120237462_120237645_120237736
ONT_simulated_read_10738281	chr8	-	1107	1	NIC	ENSMUSG00000025591.7	novel	4328	7	NA	NA	9609	-2686	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGATAACCACCGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	66929562	66928455	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_66928500_66929600
ONT_simulated_read_10740308	chr6	+	567	5	ISM	ENSMUSG00000053119.12	ENSMUST00000059462.12	2654	6	95	3787	-25	-2379	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGAAGCAGCTGAGATGG	NA	NA	NA	NA	NA	NA	NA	NA	71520875	71554776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714
ONT_simulated_read_1074129	chr1	-	980	9	ISM	ENSMUSG00000053483.16	ENSMUST00000111305.8	2278	13	2913	176	2913	-176	3prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATCGGGGAGGGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	171112584	171109698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499
ONT_simulated_read_10742171	chr4	-	609	1	ISM	ENSMUSG00000050390.13	ENSMUST00000106051.8	5049	7	6438	1287	4541	304	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGTGGGGCTGTGGAATT	NA	NA	NA	NA	NA	NA	NA	NA	129115266	129114657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129114700_129115300
ONT_simulated_read_1074241	chr2	-	1458	2	ISM	ENSMUSG00000039983.14	ENSMUST00000036470.14	1870	4	7180	73	5173	-73	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCCTCTTCTGGCAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	118852694	118848332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_118849646_118852549
ONT_simulated_read_10743810	chr11	-	479	2	ISM	ENSMUSG00000020738.17	ENSMUST00000118155.8	884	3	1498	321	1134	-321	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCCCCTTCTCCACTAG	NA	NA	NA	NA	NA	NA	NA	NA	115425509	115414248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115414596_115425377
ONT_simulated_read_10744166	chr6	+	431	1	ISM	ENSMUSG00000032712.17	ENSMUST00000046689.13	6066	5	46	25759	0	-25026	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAGTGGGTGAGCTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	149210971	149211402	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_149211000_149211400
ONT_simulated_read_10744526	chr19	-	452	1	ISM	ENSMUSG00000024725.14	ENSMUST00000025631.7	2726	10	50465	1545	50329	-1545	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTCTCAACAGAAAATT	NA	NA	NA	NA	NA	NA	NA	NA	18558688	18558236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_18558200_18558700
ONT_simulated_read_10746538	chr1	-	177	2	ISM	ENSMUSG00000007097.15	ENSMUST00000097464.4	3186	20	13406	2605	13315	-2605	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCACCCCATCACAGCTAA	NA	NA	NA	NA	NA	NA	NA	NA	172112225	172108254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_172108273_172112066
ONT_simulated_read_10748640	chr11	+	662	6	ISM	ENSMUSG00000002741.10	ENSMUST00000002818.9	2541	7	3611	1560	3611	-1560	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGGGAAGGAATTTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	5909303	5916220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_5909380_5911187_5911289_5912336_5912442_5912692_5912759_5914560_5914663_5916008
ONT_simulated_read_10748867	chr5	-	1119	4	FSM	ENSMUSG00000029580.15	ENST00000441772.1	1223	4	-5	109	-3	-59	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGGTGGCTCCATCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	142891446	142889661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_142889697_142889821_142890538_142890991_142891232_142891318
ONT_simulated_read_10749472	chrX	-	474	1	ISM	ENSMUSG00000036985.13	ENSMUST00000037960.11	2982	10	35058	1187	35058	-1187	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCCAGTCCTTTCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	47262506	47262032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_47262000_47262500
ONT_simulated_read_10750894	chr8	-	699	6	ISM	ENSMUSG00000033732.11	ENSMUST00000042012.7	4525	26	15225	11329	15225	-11329	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGACCCTGTTACTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	111558183	111548199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115
ONT_simulated_read_10751255	chr15	-	2126	1	ISM	ENSMUSG00000072568.5	ENSMUST00000100635.5	5565	2	1646	2315	1646	-2315	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATAAGCCTAAATCTTC	NA	NA	NA	NA	NA	NA	NA	NA	60695283	60693157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_60693200_60695300
ONT_simulated_read_10752164	chr9	+	481	6	ISM	ENSMUSG00000032604.17	ENSMUST00000006838.16	2800	24	3433	3025	3079	-3025	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTCTCCATGGAGGGACA	NA	NA	NA	NA	NA	NA	NA	NA	108388337	108390115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058
ONT_simulated_read_10753233	chr18	-	574	3	ISM	ENSMUSG00000024527.11	ENSMUST00000025408.10	3094	17	39595	552	39595	-552	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGAGGAGCCGCTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	67542647	67538385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_67538585_67540335_67540531_67542467
ONT_simulated_read_10755007	chrX	+	2009	12	ISM	ENSMUSG00000036769.15	ENST00000371822.9	3873	18	125	17858	61	-17838	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	119	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACCGTTTCGGCAGCGA	NA	NA	NA	NA	NA	NA	NA	NA	23559397	23654327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_23559779_23598556_23598591_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290
ONT_simulated_read_1075568	chr9	+	897	9	ISM	ENSMUSG00000055720.11	ENSMUST00000163329.2	1364	11	22	7416	22	-7414	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACTGCCCTGGCCCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	57818290	57829835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_57818343_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733
ONT_simulated_read_10756073	chr1	-	309	2	ISM	ENSMUSG00000060743.13	ENST00000666609.1	608	4	2581	-14	2581	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTTATCAGTAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	180637808	180630588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_180630771_180637681
ONT_simulated_read_10756237	chr13	-	1778	15	ISM	ENSMUSG00000021494.10	ENSMUST00000224765.2	2199	17	638	107	638	-107	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGAAGCCAGCCTCCCGG	NA	NA	NA	NA	NA	NA	NA	NA	55683833	55678335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698
ONT_simulated_read_10757726	chr13	-	2545	11	ISM	ENSMUSG00000034675.18	ENSMUST00000021950.15	3078	15	5854	0	5804	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGGGCCTGCTGCTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	55630070	55621241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_55622107_55622268_55622372_55622672_55623350_55623958_55624130_55624448_55624587_55625363_55625494_55625589_55625650_55629161_55629226_55629351_55629504_55629725_55629804_55629963
ONT_simulated_read_10758463	chr18	-	1887	1	ISM	ENSMUSG00000056153.16	ENSMUST00000070116.12	6036	3	23429	3838	23323	-512	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAAAGGGATGCCTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	88889017	88887130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_88887100_88889000
ONT_simulated_read_10760509	chr10	-	1118	4	ISM	ENSMUSG00000039497.9	ENST00000331677.7	4708	6	21195	3609	21195	265	internal_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTCAGGGGAGAGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	34038962	34029531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_34029971_34031904_34032113_34035964_34036205_34038731
ONT_simulated_read_10765194	chr5	-	1090	1	ISM	ENSMUSG00000057614.7	ENSMUST00000074694.7	3135	8	93164	967	93164	-967	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTGATGAAAGCATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	18472189	18471099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_18471100_18472200
ONT_simulated_read_1076541	chr7	+	656	4	FSM	ENSMUSG00000040466.17	ENST00000595483.5	574	4	-63	-19	7	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATTTTCCTCTCTCTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	27147485	27165409	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_27147622_27158680_27158846_27158987_27159078_27165144
ONT_simulated_read_1076870	chr4	-	418	1	ISM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	52801	1035	52767	-1035	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTTGAATGCAGCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	56812387	56811969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_56812000_56812400
ONT_simulated_read_10769916	chr4	-	1195	3	ISM	ENSMUSG00000043962.17	ENST00000469141.6	3074	11	7834	13119	7834	-5550	internal_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCAGTCGCCCAAAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	126080354	126072185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126072351_126073704_126074608_126080227
ONT_simulated_read_1077057	chr10	-	1187	1	ISM	ENSMUSG00000035864.15	ENST00000457153.6	4157	8	190326	1894	190326	-1892	mono-exon	FALSE	NA	NA	NA	NA	NA	197	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTTCACCCCAATATTGA	NA	NA	NA	NA	NA	NA	NA	NA	108336591	108335404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_108335400_108336600
ONT_simulated_read_10771439	chr8	-	143	1	ISM	ENSMUSG00000031545.7	ENSMUST00000167004.3	5518	13	33705	3234	9930	68	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGCAGTTGTTGCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	23664657	23664514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_23664500_23664700
ONT_simulated_read_10772804	chr3	-	820	6	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	1200	200	1200	-200	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	203	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAATGATCAAGGTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	105866215	105850213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177
ONT_simulated_read_10775290	chr4	-	211	1	ISM	ENSMUSG00000028494.13	ENSMUST00000000466.13	1888	8	12694	591	12694	-591	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATGGATTACTTTGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	86575603	86575392	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_86575400_86575600
ONT_simulated_read_10777654	chr3	+	383	3	ISM	ENSMUSG00000075700.11	ENSMUST00000107924.3	3157	6	62	7086	-12	-4849	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATCTGGCAGTGGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	58484118	58493468	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_58484295_58492651_58492763_58493372
ONT_simulated_read_10778600	chr6	-	1779	9	ISM	ENSMUSG00000005069.13	ENSMUST00000112531.8	3075	15	10171	600	9347	552	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGGTGGACACTGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	124381651	124374375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381588
ONT_simulated_read_10778812	chr4	-	444	1	NIC	ENSMUSG00000028982.10	novel	1887	7	NA	NA	29339	-459	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATCATGCTATTTAATG	NA	NA	NA	NA	NA	NA	NA	NA	149829395	149828951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_149829000_149829400
ONT_simulated_read_1078062	chr6	+	477	4	ISM	ENSMUSG00000030347.7	ENSMUST00000032497.7	2501	14	10374	20004	10374	-20004	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGAGGCCCGCGGTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	126927302	126932926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_126927360_126931697_126931805_126932097_126932296_126932811
ONT_simulated_read_10782013	chr9	+	340	1	ISM	ENSMUSG00000049281.17	ENSMUST00000049941.12	4150	7	0	22062	0	-19646	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTCTCGGTGGATCGAA	NA	NA	NA	NA	NA	NA	NA	NA	40180512	40180852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_40180500_40180900
ONT_simulated_read_10782757	chr9	+	867	8	FSM	ENSMUSG00000023277.14	ENST00000678838.1	1402	8	22	513	22	-511	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTACATCCCAAGCAACAC	NA	NA	NA	NA	NA	NA	NA	NA	106080343	106092075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_106080484_106084087_106084166_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
ONT_simulated_read_10783021	chr11	-	741	7	ISM	ENSMUSG00000020523.15	ENSMUST00000108850.2	1765	14	13258	190	8842	-190	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTGATAGCCAAGAAATCT	NA	NA	NA	NA	NA	NA	NA	NA	57396171	57374807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059
ONT_simulated_read_10783111	chr1	+	2128	15	ISM	ENSMUSG00000037461.11	ENST00000366993.7	3130	20	12	7967	12	-7967	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCGGTACAGAGATCTCTA	NA	NA	NA	NA	NA	NA	NA	NA	191307887	191345786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750
ONT_simulated_read_10790109	chr4	+	1063	3	FSM	ENSMUSG00000028847.9	ENST00000616074.4	1105	3	40	2	40	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCCTGTTTTCCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	126156192	126169676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_126156331_126167682_126167866_126168934
ONT_simulated_read_10791054	chr7	+	443	2	ISM	ENSMUSG00000052512.18	ENST00000533917.5	4749	26	12300	55438	12300	-55132	internal_fragment	TRUE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGGTAACCTAGAGTCCC	NA	NA	NA	NA	NA	NA	NA	NA	49197939	49201437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_49198290_49201344
ONT_simulated_read_1079228	chr11	-	1163	1	ISM	ENSMUSG00000040699.14	ENSMUST00000045923.10	2950	5	1328	1396	1113	779	mono-exon	FALSE	NA	NA	NA	NA	NA	361	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGGCCAAGACCTTAGT	NA	NA	NA	NA	NA	NA	NA	NA	106049640	106048477	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106048500_106049600
ONT_simulated_read_10793324	chr5	-	895	4	ISM	ENSMUSG00000001844.11	ENSMUST00000161915.8	1216	6	2043	-8	2043	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	NA	NA	NA	NA	NA	NA	NA	NA	143310066	143302243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886
ONT_simulated_read_1079432	chr6	+	2266	1	ISM	ENSMUSG00000000439.10	ENSMUST00000000449.9	6230	8	17753	704	17753	-704	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCACTGTGCTCTGCATA	NA	NA	NA	NA	NA	NA	NA	NA	115596615	115598881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_115596600_115598900
ONT_simulated_read_1079470	chr18	+	349	1	ISM	ENSMUSG00000054477.17	ENSMUST00000183850.8	3546	11	416529	1	125380	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACATTTGTTTGGTCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	45818600	45818949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_45818600_45818900
ONT_simulated_read_10798800	chrX	+	217	1	NIC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	0	-16383	mono-exon	FALSE	NA	NA	NA	NA	NA	235	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCCGTACTGCTGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	105230705	105230922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_+_105230700_105230900
ONT_simulated_read_10803419	chr19	-	280	1	ISM	ENSMUSG00000025050.9	ENSMUST00000026032.7	2159	10	16223	785	16223	-785	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAACACTGAATTTTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	47023120	47022840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_47022800_47023100
ONT_simulated_read_10808667	chr1	+	691	12	ISM	ENSMUSG00000026414.14	ENSMUST00000188028.7	1200	16	32	2801	0	-1979	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAGGTGCAAAGCAGCATC	NA	NA	NA	NA	NA	NA	NA	NA	135764123	135777197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_135764185_135768602_135768651_135769638_135769650_135769752_135769765_135771522_135771553_135773292_135773383_135773635_135773672_135774459_135774494_135775446_135775511_135775718_135775836_135776548_135776627_135777087
ONT_simulated_read_10809088	chr2	-	676	1	ISM	ENSMUSG00000026779.7	ENSMUST00000028119.7	5590	12	37469	2274	37317	280	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCCAGGACTATATTACTA	NA	NA	NA	NA	NA	NA	NA	NA	23008567	23007891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_23007900_23008600
ONT_simulated_read_10809208	chr18	-	2369	1	ISM	ENSMUSG00000054008.10	ENSMUST00000235795.2	5262	3	38723	1978	24549	-494	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCAAACCCCGATGTATG	NA	NA	NA	NA	NA	NA	NA	NA	60821912	60819543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_60819500_60821900
ONT_simulated_read_10810640	chr1	-	244	1	ISM	ENSMUSG00000055322.17	ENSMUST00000169786.8	9966	35	209783	4190	13849	109	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCGTGGAGAAGGAAAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	73953823	73953579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_73953600_73953800
ONT_simulated_read_10811031	chr11	+	503	5	ISM	ENSMUSG00000020739.12	ENSMUST00000021085.11	2230	19	0	15261	0	-15261	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTAGCTGCTTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	115455259	115459550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504
ONT_simulated_read_10812725	chr12	-	1023	7	ISM	ENSMUSG00000021266.17	ENSMUST00000161154.2	1824	11	12045	1312	1757	-80	internal_fragment	FALSE	canonical	NA	NA	NA	NA	274	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCCCGACGCAAGGCGGT	NA	NA	NA	NA	NA	NA	NA	NA	108847078	108827271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968
ONT_simulated_read_10813408	chr11	-	994	3	ISM	ENSMUSG00000020116.8	ENSMUST00000020317.8	1544	7	2661	0	2661	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	303	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCAGTCTCTTTTTCTAA	NA	NA	NA	NA	NA	NA	NA	NA	17158907	17153197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_17154002_17154500_17154572_17158788
ONT_simulated_read_10814558	chr4	-	1349	1	ISM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	55578	1919	55578	-1919	mono-exon	FALSE	NA	NA	NA	NA	NA	402	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTGAGACAGGATGTT	NA	NA	NA	NA	NA	NA	NA	NA	134944547	134943198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_134943200_134944500
ONT_simulated_read_10815198	chr10	-	1264	9	ISM	ENSMUSG00000035189.18	ENSMUST00000182790.8	4018	27	276096	527	275932	-163	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCAGTTACATTCTCAAGT	NA	NA	NA	NA	NA	NA	NA	NA	88817066	88785390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_88785645_88788051_88788248_88790526_88790633_88796443_88796564_88807129_88807278_88808600_88808754_88814537_88814681_88816805_88816904_88817020
ONT_simulated_read_10816247	chr5	-	706	1	ISM	ENSMUSG00000029512.12	ENSMUST00000031490.11	5213	28	23870	1034	23826	572	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGCAACAGGCTTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	110934093	110933387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_110933400_110934100
ONT_simulated_read_10816846	chr5	-	478	1	ISM	ENSMUSG00000062110.15	ENSMUST00000072857.13	3672	9	325374	1082	325374	194	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAGGCTACGTTTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	74367036	74366558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_74366600_74367000
ONT_simulated_read_10817588	chr13	-	992	7	ISM	ENSMUSG00000041747.4	ENST00000508491.1	1510	12	5940	-204	5940	204	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTACCTGTTTCAAGATG	NA	NA	NA	NA	NA	NA	NA	NA	98391533	98385529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_98385885_98387079_98387139_98387292_98387427_98388436_98388539_98389252_98389403_98390151_98390237_98391426
ONT_simulated_read_10820498	chr5	-	1679	7	ISM	ENSMUSG00000028969.11	ENSMUST00000030814.11	2059	12	2503	0	2458	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGGAAGCCAACCATGCC	NA	NA	NA	NA	NA	NA	NA	NA	24626025	24623238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_24624461_24624597_24624679_24624780_24624842_24625256_24625327_24625490_24625588_24625728_24625804_24625952
ONT_simulated_read_10821305	chr7	-	191	1	ISM	ENSMUSG00000001773.15	ENSMUST00000001824.7	3125	19	56095	681	53459	1	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACATTCTACAGAATCACAA	NA	NA	NA	NA	NA	NA	NA	NA	86369056	86368865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_86368900_86369100
ONT_simulated_read_1082223	chrX	-	2541	17	ISM	ENSMUSG00000036916.14	ENSMUST00000076635.13	4355	19	13626	1257	13254	-1256	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTCATTCTTTGTATGT	NA	NA	NA	NA	NA	NA	NA	NA	47667384	47631758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256
ONT_simulated_read_10827360	chr7	-	375	1	FSM	ENSMUSG00000081911.2	ENSMUST00000118658.2	309	1	0	-66	0	66	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATGAAAAGTCATATATT	NA	NA	NA	NA	NA	NA	NA	NA	105339774	105339399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_105339400_105339800
ONT_simulated_read_108302	chr8	+	1414	11	ISM	ENSMUSG00000031753.17	ENST00000393612.8	2387	18	12818	0	12818	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCCAAAGGTCCAGGCTA	NA	NA	NA	NA	NA	NA	NA	NA	111586490	111608579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
ONT_simulated_read_10831712	chr14	-	198	3	ISM	ENSMUSG00000021831.10	ENST00000395686.8	2224	14	16583	14703	16583	-14703	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCTACAAGGGGCCAGAC	NA	NA	NA	NA	NA	NA	NA	NA	45539372	45537362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_45537420_45539149_45539224_45539305
ONT_simulated_read_10833029	chr8	-	160	1	ISM	ENSMUSG00000045636.17	ENSMUST00000059115.13	6548	14	131224	11429	14249	-8923	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGAGGCAGAAAAATATAAA	NA	NA	NA	NA	NA	NA	NA	NA	41455539	41455379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_41455400_41455500
ONT_simulated_read_10834237	chr1	+	855	6	ISM	ENSMUSG00000039354.17	ENSMUST00000152225.2	2994	17	32907	0	32907	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTATTCCGTTTGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	72655680	72672293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_72655738_72659190_72659294_72665621_72665805_72667259_72667361_72668533_72668631_72671979
ONT_simulated_read_10838646	chr2	-	809	8	ISM	ENSMUSG00000074643.13	ENST00000352393.8	1940	18	13562	4659	13554	-4659	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAACTGCAAGCAGTCCCG	NA	NA	NA	NA	NA	NA	NA	NA	155940267	155920086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155940149
ONT_simulated_read_10842344	chr2	+	728	4	ISM	ENSMUSG00000038533.16	ENSMUST00000109725.8	6080	11	87503	4118	63920	-813	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	171	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGGCTATTAGAACAAGT	NA	NA	NA	NA	NA	NA	NA	NA	154365903	154377158	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_154366020_154370756_154370826_154373144_154373333_154376803
ONT_simulated_read_10842790	chr2	-	550	1	ISM	ENSMUSG00000026669.15	ENSMUST00000102985.8	4867	20	20872	1209	20872	-199	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGACTGTGATTGCAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	4996283	4995733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_4995700_4996300
ONT_simulated_read_10845927	chr1	+	303	1	ISM	ENSMUSG00000026156.9	ENSMUST00000063663.6	5655	4	83417	3513	82708	-942	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAGGGAAATAACATTTTG	NA	NA	NA	NA	NA	NA	NA	NA	23884423	23884726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_23884400_23884700
ONT_simulated_read_10846525	chr10	-	1769	1	ISM	ENSMUSG00000038876.13	ENSMUST00000160144.9	4323	3	14559	1939	9830	1	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTTAAAGGTGAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	29223879	29222110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_29222100_29223900
ONT_simulated_read_10847222	chr10	-	1600	1	FSM	ENSMUSG00000074748.4	ENSMUST00000099276.4	3566	1	475	1491	475	-1491	mono-exon	FALSE	NA	NA	NA	NA	NA	265	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATTCCAGGTGCTGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	112764425	112762825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_112762800_112764400
ONT_simulated_read_10847338	chr12	-	776	1	NIC	ENSMUSG00000020956.15	novel	1012	4	NA	NA	6627	-1592	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTCTGCGATTGGACGCTT	NA	NA	NA	NA	NA	NA	NA	NA	52046657	52045881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_52045900_52046700
ONT_simulated_read_10848282	chr16	-	760	5	ISM	ENSMUSG00000022754.7	ENSMUST00000023435.6	2701	6	60307	1588	60307	-1588	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACCTCAGAAGTTGGACT	NA	NA	NA	NA	NA	NA	NA	NA	56646222	56627111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_56627140_56631888_56632035_56642587_56642773_56643750_56643958_56646028
ONT_simulated_read_10849057	chr13	-	1249	1	ISM	ENSMUSG00000021693.21	ENSMUST00000022204.16	5304	20	59931	1943	34569	321	mono-exon	FALSE	NA	NA	NA	NA	NA	508	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGCTGCTAATCTAAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	107098695	107097446	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_107097400_107098700
ONT_simulated_read_10849494	chr17	+	539	1	NIC	ENSMUSG00000042099.17	novel	2641	11	NA	NA	7384	-4469	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCTCCACTACTGGTTG	NA	NA	NA	NA	NA	NA	NA	NA	34036880	34037419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_+_34036900_34037400
ONT_simulated_read_10856849	chr16	+	968	11	ISM	ENSMUSG00000003234.17	ENSMUST00000003319.6	3090	21	686	9017	686	-9017	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGACTTTGAAACCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	20368012	20371112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008
ONT_simulated_read_10858194	chr2	-	1158	1	ISM	ENSMUSG00000017144.9	ENSMUST00000017288.9	2828	5	16593	923	16592	474	mono-exon	FALSE	NA	NA	NA	NA	NA	203	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAGGCAGGTGGTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	51022530	51021372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_51021400_51022500
ONT_simulated_read_1085837	chr18	+	1213	7	ISM	ENSMUSG00000024560.8	ENSMUST00000025444.8	2620	15	0	2576	0	-2576	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGGACCCCGATCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	74349201	74351988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_74349554_74350237_74350357_74350459_74350561_74350831_74351068_74351156_74351349_74351699_74351727_74351802
ONT_simulated_read_10861947	chr9	+	950	2	ISM	ENSMUSG00000032567.17	ENSMUST00000123807.8	2349	6	74	8150	74	-7856	intron_retention	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAGTCCTGGGACTTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	105272687	105274516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_105272865_105273743
ONT_simulated_read_10867903	chr13	-	676	4	ISM	ENSMUSG00000021567.16	ENST00000296849.10	1299	8	22644	242	22644	-242	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1030	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACCACAGCCTCCACCGC	NA	NA	NA	NA	NA	NA	NA	NA	73972493	73969319	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_73969657_73970808_73970937_73971390_73971476_73972367
ONT_simulated_read_10868431	chr7	+	2319	1	FSM	ENSMUSG00000100153.3	ENSMUST00000118909.2	972	1	-202	-1145	0	18	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAGCTTGGGAATGACA	NA	NA	NA	NA	NA	NA	NA	NA	119339148	119341467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_119339100_119341500
ONT_simulated_read_10872190	chr11	-	1486	18	ISM	ENSMUSG00000057897.15	ENST00000258682.10	1650	20	50033	0	50030	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCCTCCCCTGGTGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	5965508	5921734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5929672_5929722_5931069_5931115_5932500_5932573_5932720_5932759_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449
ONT_simulated_read_10874498	chrX	-	1358	1	ISM	ENSMUSG00000031386.15	ENSMUST00000033761.13	8138	26	21880	328	21874	-323	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTAGGCAGTGAGTAATG	NA	NA	NA	NA	NA	NA	NA	NA	72988083	72986725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_72986700_72988100
ONT_simulated_read_10876336	chr9	-	636	4	ISM	ENSMUSG00000025245.15	ENSMUST00000026274.14	4070	10	9658	2796	9658	-2796	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAGAGTGGGAAGAAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	123537032	123528872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_123529169_123529934_123530039_123531189_123531367_123536973
ONT_simulated_read_1087779	chr14	-	599	1	ISM	ENSMUSG00000021978.10	ENSMUST00000022550.8	5977	7	43302	2146	43301	-2143	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACACATTCATACATACAT	NA	NA	NA	NA	NA	NA	NA	NA	65292253	65291654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_65291700_65292300
ONT_simulated_read_10879555	chr11	-	673	8	ISM	ENSMUSG00000025576.18	ENST00000583458.5	2636	12	107298	1445	107298	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAAAAACAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	118393728	118382028	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_118382068_118384975_118385055_118386043_118386109_118387176_118387358_118387763_118387897_118388012_118388067_118392394_118392456_118393667
ONT_simulated_read_10880167	chr6	-	128	1	ISM	ENSMUSG00000038167.7	ENSMUST00000042647.7	3299	17	17926	80	17639	0	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTCTGAGGACCCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	125339830	125339702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_125339700_125339800
ONT_simulated_read_10881194	chr15	-	929	6	ISM	ENSMUSG00000022340.16	ENSMUST00000090057.6	3230	8	254	5783	35	-5335	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCACTGAGCCCCAGTAA	NA	NA	NA	NA	NA	NA	NA	NA	44651205	44541034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_44541135_44546743_44546847_44582183_44582382_44609641_44609859_44611704_44611795_44650984
ONT_simulated_read_10881689	chr8	-	420	1	ISM	ENSMUSG00000006276.11	ENSMUST00000163643.3	3129	24	79961	81	79952	-79	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGACACCCCACACACAT	NA	NA	NA	NA	NA	NA	NA	NA	73095343	73094923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_73094900_73095300
ONT_simulated_read_10881977	chr4	+	387	1	ISM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	0	28506	0	-23373	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTGAGAATCAGTGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	21847582	21847969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_21847600_21848000
ONT_simulated_read_10890556	chr1	-	1307	1	ISM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	32243	0	32095	0	mono-exon	FALSE	NA	NA	NA	NA	NA	477	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCCTAAAAGACCAATGGC	NA	NA	NA	NA	NA	NA	NA	NA	177591834	177590527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_177590500_177591800
ONT_simulated_read_10891958	chr9	-	365	1	ISM	ENSMUSG00000043987.19	ENSMUST00000117194.8	5541	30	60346	1035	55382	277	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTAGTTAAAGCGACTGCT	NA	NA	NA	NA	NA	NA	NA	NA	45679643	45679278	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_45679300_45679600
ONT_simulated_read_10896859	chr2	+	797	8	ISM	ENSMUSG00000017760.17	ENST00000354880.9	1783	14	22	2546	22	-2509	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATGCTCCGTGTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	164675734	164678955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_164675771_164675949_164676129_164676239_164676352_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905
ONT_simulated_read_10897014	chr7	-	836	8	ISM	ENSMUSG00000040331.17	ENSMUST00000160289.9	1435	11	7416	0	7416	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACGTGATCGTTTTTATTG	NA	NA	NA	NA	NA	NA	NA	NA	130141695	130134255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_130134423_130135306_130135397_130135499_130135592_130137253_130137303_130138712_130138808_130139891_130139983_130140740_130140841_130141543
ONT_simulated_read_10901462	chr13	-	1441	9	ISM	ENSMUSG00000021713.10	ENST00000538977.5	2009	10	172	1847	164	-1847	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACGAATTCCACTCAACA	NA	NA	NA	NA	NA	NA	NA	NA	104365166	104343716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_104343790_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104353788_104356544_104356993_104359345_104359467_104359599_104359701_104365113
ONT_simulated_read_10903988	chr1	-	743	1	ISM	ENSMUSG00000004364.15	ENSMUST00000163119.8	4709	16	73195	1620	73026	280	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGACTTGTTTTTCTCTA	NA	NA	NA	NA	NA	NA	NA	NA	80245002	80244259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_80244300_80245000
ONT_simulated_read_10904830	chr1	-	407	4	ISM	ENSMUSG00000057363.13	ENST00000283148.12	2033	15	47597	15356	47597	-15356	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTACTGCCCAGAGGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	43819327	43804047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_43804170_43810840_43810963_43813976_43814037_43819224
ONT_simulated_read_10904851	chr17	-	1279	1	ISM	ENSMUSG00000034647.16	ENSMUST00000038116.13	10821	13	108925	1172	108925	-1172	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTAGACTTAACTGGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	66275143	66273864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_66273900_66275100
ONT_simulated_read_10906130	chr19	-	1477	8	NNC	ENSMUSG00000024969.16	novel	3104	17	NA	NA	10669	-59	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCCCACATTCACCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	7262143	7254272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_7254816_7255406_7255452_7258362_7258621_7260090_7260184_7260397_7260571_7260800_7260934_7261829_7261943_7262024
ONT_simulated_read_10906770	chr7	+	1559	9	FSM	ENSMUSG00000030616.17	ENST00000389958.7	1763	9	205	-1	137	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCACATGTTTCCTACCA	NA	NA	NA	NA	NA	NA	NA	NA	90036579	90059034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_90036765_90044370_90044491_90045681_90045852_90048391_90048495_90050605_90050777_90052238_90052318_90056118_90056219_90057563_90057770_90058609
ONT_simulated_read_10914567	chr6	-	384	1	ISM	ENSMUSG00000030045.11	ENSMUST00000032124.9	5000	5	3808	3916	3808	-3916	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATCTTTCTGCCGGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	81939131	81938747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_81938700_81939100
ONT_simulated_read_10915097	chr1	-	737	1	NIC	ENSMUSG00000006301.18	novel	2378	12	NA	NA	14842	-530	mono-exon	FALSE	NA	NA	NA	NA	NA	265	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGAGTTTCATCAGTATG	NA	NA	NA	NA	NA	NA	NA	NA	74328678	74327941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_74327900_74328700
ONT_simulated_read_10915561	chr9	-	166	1	ISM	ENSMUSG00000002032.18	ENSMUST00000114705.9	2649	7	2621	2655	2621	-1240	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACCAACCACACTGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	44707892	44707726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44707700_44707900
ONT_simulated_read_10916381	chr19	+	1198	6	ISM	ENSMUSG00000018820.14	ENSMUST00000099443.11	2573	12	12891	563	4197	-309	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGAGCAGAGAGACTGCAA	NA	NA	NA	NA	NA	NA	NA	NA	42171923	42179593	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_42172004_42172556_42172629_42174243_42174389_42177635_42177683_42177960_42178043_42178821
ONT_simulated_read_10916483	chr11	-	701	1	ISM	ENSMUSG00000051378.11	ENSMUST00000021311.10	3326	16	18895	0	18895	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTGGAAAGTTAGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	102797055	102796354	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_102796400_102797100
ONT_simulated_read_10918171	chr10	-	902	6	ISM	ENSMUSG00000020230.16	ENSMUST00000020452.12	2016	11	16674	446	16673	-441	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCGTTCCATGCTGACCCC	NA	NA	NA	NA	NA	NA	NA	NA	76056997	76043506	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_76043628_76044245_76044418_76045171_76045309_76046231_76046362_76053147_76053324_76056831
ONT_simulated_read_10919028	chr11	-	2294	1	ISM	ENSMUSG00000017615.13	ENSMUST00000017759.9	3720	7	10755	373	10748	-373	mono-exon	FALSE	NA	NA	NA	NA	NA	496	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAATAATACTGAAGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	78416342	78414048	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_78414000_78416300
ONT_simulated_read_10919424	chr4	-	1334	9	ISM	ENSMUSG00000009640.12	ENSMUST00000102687.4	1566	11	930	0	930	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	185	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTGTTTCCTCACTTCC	NA	NA	NA	NA	NA	NA	NA	NA	117538540	117531877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470
ONT_simulated_read_10920611	chr1	-	381	1	NIC	ENSMUSG00000042215.9	novel	1860	3	NA	NA	10724	165	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCAGAACACTGACGGCAA	NA	NA	NA	NA	NA	NA	NA	NA	33786098	33785717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_33785700_33786100
ONT_simulated_read_10922442	chr6	-	619	7	ISM	ENSMUSG00000000441.18	ENST00000442415.7	2991	18	45162	4405	44609	-4405	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATTGTGACTCAGTGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	115608316	115599955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_115600015_115600424_115600510_115603251_115603370_115603672_115603801_115603899_115603928_115607601_115607662_115608175
ONT_simulated_read_10923661	chr5	-	838	7	ISM	ENSMUSG00000033434.16	ENSMUST00000077220.14	1617	10	1021	604	1021	-604	internal_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCATCTGCCTCCCGCAC	NA	NA	NA	NA	NA	NA	NA	NA	110255042	110252444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925
ONT_simulated_read_10928203	chr3	-	490	1	ISM	ENSMUSG00000037062.14	ENSMUST00000199531.5	2584	10	34988	955	34988	-955	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCTTGTGAAGGAAAACAT	NA	NA	NA	NA	NA	NA	NA	NA	144390883	144390393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_144390400_144390900
ONT_simulated_read_10928594	chr1	-	1821	12	ISM	ENSMUSG00000033684.15	ENSMUST00000194632.2	2433	13	9080	260	9080	-260	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTAGTGCCTTAGTCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	155679510	155654167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_155654598_155655463_155655685_155657020_155657201_155658270_155658419_155659148_155659272_155662539_155662670_155665043_155665179_155666726_155666873_155667939_155668031_155670291_155670395_155671096_155671143_155679442
ONT_simulated_read_1092871	chr12	+	841	6	ISM	ENSMUSG00000002900.18	ENSMUST00000169088.8	5557	34	58287	360	58227	-360	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTATAAGAAGGTAGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	31373519	31379132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_31373665_31374174_31374320_31376168_31376377_31376566_31376709_31377643_31377821_31379108
ONT_simulated_read_10929582	chr9	-	733	1	NIC	ENSMUSG00000066456.15	novel	855	7	NA	NA	35377	-413	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACCTCTCGGGACAACTTT	NA	NA	NA	NA	NA	NA	NA	NA	82993146	82992413	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_82992400_82993100
ONT_simulated_read_10931022	chr8	+	1135	4	NIC	ENSMUSG00000031840.15	novel	1363	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACGCAGTCCTTGACAT	NA	NA	NA	NA	NA	NA	NA	NA	71207359	71211281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_+_71207513_71209093_71209213_71209783_71209909_71210543
ONT_simulated_read_10932489	chr1	+	578	1	FSM	ENSMUSG00000103367.2	ENSMUST00000194617.2	339	1	0	-239	0	239	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACGGGGAACACAGTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	176663289	176663867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_176663300_176663900
ONT_simulated_read_10933668	chr9	-	1098	8	ISM	ENSMUSG00000032423.13	ENSMUST00000173801.8	2944	11	2880	1064	1078	-504	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	406	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCCAGATTATTATGGATA	NA	NA	NA	NA	NA	NA	NA	NA	88361728	88338694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623
ONT_simulated_read_10935311	chr14	-	1006	3	ISM	ENSMUSG00000021959.17	ENSMUST00000173990.8	3834	7	11721	6649	-84	-6649	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCCCTCCCGCCAGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	57971841	57937649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_57938016_57940378_57940512_57971334
ONT_simulated_read_10935492	chr10	-	1317	1	NIC	ENSMUSG00000020107.11	novel	1852	4	NA	NA	13930	-114	mono-exon	FALSE	NA	NA	NA	NA	NA	539	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTACCCTAGCCAGCAT	NA	NA	NA	NA	NA	NA	NA	NA	59824661	59823344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_59823300_59824700
ONT_simulated_read_10935947	chr9	-	811	5	ISM	ENSMUSG00000039542.17	ENST00000531044.5	2564	17	46257	0	46257	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAAATAATCCCCCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	49434946	49416680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_49416864_49419888_49420006_49421004_49421213_49431334_49431513_49434821
ONT_simulated_read_10937802	chr1	+	951	5	ISM	ENSMUSG00000033488.12	ENSMUST00000119891.7	1125	7	3372	0	3213	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	NA	NA	NA	NA	NA	NA	NA	157289521	157316630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157316012
ONT_simulated_read_10937827	chrX	-	1392	1	NIC	ENSMUSG00000087396.8	novel	4364	11	NA	NA	37222	-621	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCACTGTATGATCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	74771083	74769691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_74769700_74771100
ONT_simulated_read_10938261	chr15	+	1107	9	ISM	ENSMUSG00000022371.17	ENST00000309791.8	6046	48	96	146974	0	-146974	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTCTAGAGTGGAAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	55171314	55236091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_55171381_55192551_55192677_55201801_55201919_55205076_55205221_55208265_55208356_55225777_55225934_55226846_55226967_55229444_55229610_55235967
ONT_simulated_read_10938862	chr14	-	407	3	ISM	ENSMUSG00000021928.10	ENST00000569153.1	501	4	12868	0	12868	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	225	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGATTCCCAAGAGGCTA	NA	NA	NA	NA	NA	NA	NA	NA	61584890	61578655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_61578854_61579536_61579676_61584820
ONT_simulated_read_1094075	chr11	+	1077	8	ISM	ENSMUSG00000020385.17	ENSMUST00000093132.13	1949	13	0	5900	0	-5900	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTTAAAGACTTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	51153940	51166691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_51154097_51157997_51158159_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596
ONT_simulated_read_10943892	chr4	+	737	6	ISM	ENSMUSG00000028683.15	ENSMUST00000106447.9	3754	10	0	14405	0	-14405	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAGGAGGAAGGTGGAGT	NA	NA	NA	NA	NA	NA	NA	NA	116876604	116916052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_116876674_116879351_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116915960
ONT_simulated_read_10944681	chr17	-	2845	10	ISM	ENSMUSG00000024122.17	ENSMUST00000115409.9	4623	11	30454	1643	30437	1426	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGGTGGGAACAGGGATT	NA	NA	NA	NA	NA	NA	NA	NA	24330090	24296428	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24298117_24298465_24298619_24299351_24299410_24306977_24307196_24310394_24310569_24312164_24312262_24312513_24312583_24317067_24317144_24326202_24326246_24329821
ONT_simulated_read_10945341	chr1	-	510	1	ISM	ENSMUSG00000026688.6	ENSMUST00000028005.3	1097	6	21215	151	21215	-151	mono-exon	FALSE	NA	NA	NA	NA	NA	549	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGTCACATGAGCAGGTA	NA	NA	NA	NA	NA	NA	NA	NA	167200195	167199685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_167199700_167200200
ONT_simulated_read_10945945	chr17	+	515	3	ISM	ENSMUSG00000025737.6	ENSMUST00000026833.6	3099	9	903	2599	382	-2453	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGATGTACGCCGCCCCT	NA	NA	NA	NA	NA	NA	NA	NA	26043503	26045105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_26043661_26044627_26044806_26044925
ONT_simulated_read_10947014	chr14	-	929	1	ISM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	13908	120	13908	-120	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGCCTGTAATACTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	66057535	66056606	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_66056600_66057500
ONT_simulated_read_10949934	chr5	+	1625	13	ISM	ENSMUSG00000004846.11	ENSMUST00000004968.11	3280	19	457	5301	457	-5301	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGACCCTGAGGACTGAAC	NA	NA	NA	NA	NA	NA	NA	NA	137016329	137020201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153
ONT_simulated_read_1095312	chr9	-	324	3	ISM	ENSMUSG00000039048.16	ENSMUST00000043805.15	2232	11	3411	1657	3411	-1657	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGTAGCTACCGTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	35118865	35117160	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_35117317_35117518_35117596_35118774
ONT_simulated_read_10955245	chr15	-	1272	8	ISM	ENSMUSG00000049382.11	ENSMUST00000023952.10	1958	9	250	962	6	0	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	107	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGAGTCCTGGGCCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	101912667	101906094	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_101906154_101906287_101906509_101906825_101906952_101907208_101907374_101907865_101907962_101909014_101909076_101909851_101910061_101912332
ONT_simulated_read_10955438	chr8	+	383	3	ISM	ENSMUSG00000019433.10	ENSMUST00000019577.10	1522	7	21	2719	21	-2719	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCACAAAGTGGACATGGA	NA	NA	NA	NA	NA	NA	NA	NA	84379326	84388604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_84379367_84387587_84387910_84388583
ONT_simulated_read_10957293	chr1	-	2877	1	ISM	ENSMUSG00000026102.10	ENSMUST00000027271.9	5767	6	27501	1884	27501	-1884	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTCTTTTTTATTTGA	NA	NA	NA	NA	NA	NA	NA	NA	52829346	52826469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_52826500_52829300
ONT_simulated_read_10959415	chr4	-	265	3	ISM	ENSMUSG00000028693.16	ENSMUST00000081182.5	1461	13	24674	128	24674	-128	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAAGCACTGCATGTTA	NA	NA	NA	NA	NA	NA	NA	NA	116460001	116458933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_116458991_116459288_116459418_116459922
ONT_simulated_read_10959653	chr2	-	343	4	ISM	ENSMUSG00000038765.15	ENSMUST00000239476.2	1219	8	73204	652	73204	-652	internal_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACACGCCGCTGGCCCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	33457319	33455199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_33455238_33456682_33456750_33456896_33456975_33457159
ONT_simulated_read_10960683	chr9	+	449	1	ISM	ENSMUSG00000023473.14	ENST00000164024.5	11807	35	5674	20781	5420	-20781	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCGCTGCCCTCCTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	108708938	108709387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108708900_108709400
ONT_simulated_read_10960851	chr8	+	833	8	ISM	ENSMUSG00000031521.6	ENSMUST00000033920.6	1181	9	71	2269	71	-2265	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGGAGGAGATGACCCA	NA	NA	NA	NA	NA	NA	NA	NA	53964832	53974104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972027_53973271_53973380_53974084
ONT_simulated_read_10961200	chr1	+	359	2	ISM	ENSMUSG00000026167.15	ENSMUST00000006718.15	2468	4	1847	3551	1847	-3551	internal_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCGACGCCTCCAGACGT	NA	NA	NA	NA	NA	NA	NA	NA	74832521	74839787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_74832785_74839691
ONT_simulated_read_10963085	chr7	+	1331	9	ISM	ENSMUSG00000030987.6	ENSMUST00000211457.2	2183	13	0	9095	0	-9095	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCACCAGTTACCAGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	101917533	102076012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_101917761_102003707_102003839_102035293_102035409_102057573_102057686_102060455_102060572_102064544_102064723_102070559_102070738_102075179_102075348_102075906
ONT_simulated_read_10964880	chr16	+	356	4	FSM	ENSMUSG00000022744.13	ENST00000511081.5	647	4	20	271	20	-271	multi-exon	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCAAGGATGTATCTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	58548410	58553271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_58548448_58551664_58551776_58552943_58553082_58553201
ONT_simulated_read_10968088	chr7	+	590	4	ISM	ENSMUSG00000033510.15	ENST00000678495.1	2946	11	35	31410	7	-31410	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAAGGCTTCTTCCTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	63300562	63377202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_63300714_63335116_63335300_63346761_63346981_63377165
ONT_simulated_read_10970402	chr15	-	795	1	ISM	ENSMUSG00000043556.11	ENSMUST00000059204.11	4632	4	351806	2521	351806	-2521	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTAGGAGTCTGGCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	26543860	26543065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_26543100_26543900
ONT_simulated_read_10972599	chr8	-	2303	1	FSM	ENSMUSG00000099142.3	ENSMUST00000184998.3	109	1	-587	-1607	-587	1607	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATTTTAAGAAGCAACGCA	NA	NA	NA	NA	NA	NA	NA	NA	25649836	25647533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_25647500_25649800
ONT_simulated_read_10974585	chr7	-	857	1	NIC	ENSMUSG00000030869.12	novel	1416	5	NA	NA	10885	-54	mono-exon	FALSE	NA	NA	NA	NA	NA	761	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCCCAGGGCATGTGATG	NA	NA	NA	NA	NA	NA	NA	NA	121690189	121689332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_121689300_121690200
ONT_simulated_read_10977109	chr16	+	607	3	ISM	ENSMUSG00000014303.14	ENSMUST00000014447.13	3619	7	16915	2123	16915	-2123	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCCAAGAACCCGCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	4429491	4431698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_4429531_4429614_4429734_4431249
ONT_simulated_read_10977420	chr3	-	823	5	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	4093	124	4093	-124	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	439	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTATCTGATCATAATTT	NA	NA	NA	NA	NA	NA	NA	NA	105863322	105850137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211
ONT_simulated_read_10979230	chr13	+	220	2	ISM	ENSMUSG00000021481.12	ENST00000506693.5	516	3	66	8248	66	-8248	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATTCAACATTCAACGACC	NA	NA	NA	NA	NA	NA	NA	NA	55253211	55270194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_55253332_55270094
ONT_simulated_read_10979516	chr17	-	687	1	ISM	ENSMUSG00000003200.11	ENSMUST00000003268.11	2073	10	18899	300	1726	214	mono-exon	FALSE	NA	NA	NA	NA	NA	415	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATGTGACTGAAGCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	56324736	56324049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56324000_56324700
ONT_simulated_read_10980499	chr5	-	824	1	FSM	ENSMUSG00000044674.7	ENSMUST00000054294.7	4197	1	0	3373	0	-3373	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAACCAGACCATCATGCC	NA	NA	NA	NA	NA	NA	NA	NA	4808035	4807211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_4807200_4808000
ONT_simulated_read_1098109	chr14	-	292	2	ISM	ENSMUSG00000042286.14	ENST00000321725.10	7577	66	20595	2977	20595	-2977	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGGACCCCAGTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	30864789	30863950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_30864079_30864625
ONT_simulated_read_10981151	chr2	+	1417	11	ISM	ENSMUSG00000070880.11	ENSMUST00000094934.11	3355	17	0	12179	0	4714	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAGGAAATTGCGGACAT	NA	NA	NA	NA	NA	NA	NA	NA	70392385	70420179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_70392677_70394111_70394255_70397529_70397593_70403049_70403209_70404412_70404656_70409454_70409546_70416177_70416291_70417466_70417583_70417666_70417747_70417977_70418033_70420116
ONT_simulated_read_10985638	chr5	-	334	1	ISM	ENSMUSG00000070733.14	ENST00000358350.9	11477	63	234345	1746	125885	-707	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTAACTTCAAAAACAAACAA	NA	NA	NA	NA	NA	NA	NA	NA	73179594	73179260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_73179300_73179600
ONT_simulated_read_109886	chr7	-	2018	6	FSM	ENSMUSG00000030994.17	ENST00000356858.7	2043	6	26	-1	26	1	multi-exon	TRUE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGATCCCAGGTGGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	133951533	133868347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_133868567_133871922_133871987_133894956_133895135_133896693_133896873_133899844_133900130_133950440
ONT_simulated_read_10989766	chr11	-	899	8	ISM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	1586	239	1586	-225	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCCACTGCTTCTGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	69468564	69452823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451
ONT_simulated_read_10989840	chr2	-	494	1	ISM	ENSMUSG00000084938.2	ENSMUST00000126549.2	1097	3	53418	364	53418	-364	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAATGAAAAACTTGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	57018348	57017854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_57017900_57018300
ONT_simulated_read_10991153	chr11	-	1544	8	ISM	ENSMUSG00000025162.19	ENSMUST00000018274.10	3675	9	8003	1719	7765	-1719	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATCATTTTGCTAAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	120874153	120854293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120854733_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058
ONT_simulated_read_10991283	chr11	-	519	1	NIC	ENSMUSG00000061111.9	novel	822	4	NA	NA	1092	-292	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	913	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCATCCTGACCTTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	120434537	120434018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_120434000_120434500
ONT_simulated_read_10991658	chr12	-	401	3	ISM	ENSMUSG00000049106.8	ENST00000554215.5	4650	9	37095	39902	37095	-39902	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAATCAGGGTTACTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	80445665	80423357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_80423506_80444426_80444557_80445542
ONT_simulated_read_10992063	chr13	+	1776	5	ISM	ENSMUSG00000005583.17	ENSMUST00000199210.5	1185	9	77211	-1158	77211	96	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATAAGTTCAAGGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	83801006	83811908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_83801106_83802716_83802741_83803625_83803756_83804335_83804472_83810521
ONT_simulated_read_10995337	chr5	+	1289	8	ISM	ENSMUSG00000002486.16	ENSMUST00000094441.11	2882	13	6875	863	6875	-863	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTCAGGGAGGACCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	114852695	114859525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_114852863_114853613_114853727_114853895_114853963_114855497_114855671_114856439_114856522_114857639_114857826_114858185_114858330_114859168
ONT_simulated_read_10996636	chr17	+	429	5	ISM	ENSMUSG00000003199.17	ENSMUST00000159996.8	1444	12	1209	4331	1209	-4324	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGGGACATCAACAATCAG	NA	NA	NA	NA	NA	NA	NA	NA	56317439	56319322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_56317514_56317987_56318112_56318617_56318700_56318865_56318963_56319270
ONT_simulated_read_1099833	chrX	-	1302	1	ISM	ENSMUSG00000044148.7	ENSMUST00000060108.7	2699	7	17217	271	17094	-271	mono-exon	FALSE	NA	NA	NA	NA	NA	210	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCATGTGTAATACCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	12522690	12521388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_12521400_12522700
ONT_simulated_read_11000462	chr2	-	548	1	ISM	ENSMUSG00000027335.10	ENSMUST00000103184.4	1899	2	15754	132	15754	-132	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCGACCTCAGCAACCTCC	NA	NA	NA	NA	NA	NA	NA	NA	131388449	131387901	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_131387900_131388400
ONT_simulated_read_11003187	chr7	+	346	2	ISM	ENSMUSG00000015980.15	ENSMUST00000016124.15	2113	11	181	28058	-103	-14087	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTTGGGAAAGTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	138793084	138794837	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_138793184_138794590
ONT_simulated_read_11005909	chr1	+	651	7	ISM	ENSMUSG00000025995.17	ENSMUST00000027139.15	2953	21	341	16877	341	-16877	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAGATTGCATTGCATC	NA	NA	NA	NA	NA	NA	NA	NA	45834666	45845902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832
ONT_simulated_read_11006496	chr8	+	2017	9	ISM	ENSMUSG00000037134.18	ENSMUST00000056237.15	2781	12	57	8737	44	-8737	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGATGAAGCTGCTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	78276082	78299230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_78276366_78282293_78282443_78285507_78285745_78287435_78287604_78289042_78289146_78290604_78290712_78291582_78291776_78294803_78294988_78298637
ONT_simulated_read_11007808	chr12	+	1006	9	ISM	ENSMUSG00000010608.16	ENST00000526754.5	1553	11	30	1396	30	-1396	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTATTCTTGATTTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	83679064	83707452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368
ONT_simulated_read_11007827	chr18	-	414	2	ISM	ENSMUSG00000024502.11	ENST00000507386.5	4553	20	25	52189	25	-50526	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCAGGAAATGTCAAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	43723867	43715236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_43715396_43723612
ONT_simulated_read_11011864	chr13	-	1359	1	ISM	ENSMUSG00000038212.17	ENSMUST00000155487.8	3832	12	46136	818	8861	-335	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTGCTGCATAGTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	65214653	65213294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_65213300_65214700
ONT_simulated_read_11012399	chr1	-	692	6	ISM	ENSMUSG00000026245.17	ENSMUST00000068333.14	1951	17	25869	228	25831	-228	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTGGGAAGCTAGGCGT	NA	NA	NA	NA	NA	NA	NA	NA	78439665	78401932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471
ONT_simulated_read_11015656	chr11	-	287	2	ISM	ENSMUSG00000020427.12	ENSMUST00000020702.11	2421	5	5395	1268	5395	332	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACCAAAGTTTAGACAGA	NA	NA	NA	NA	NA	NA	NA	NA	7158502	7157353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_7157507_7158368
ONT_simulated_read_11016323	chr12	-	995	8	ISM	ENSMUSG00000057963.10	ENSMUST00000046518.12	2918	10	81519	1675	81519	-1675	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGGCAACATGGGCGCT	NA	NA	NA	NA	NA	NA	NA	NA	102589670	102536515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_102536744_102540180_102540344_102545363_102545432_102550545_102550712_102554154_102554196_102554722_102554822_102572347_102572466_102589558
ONT_simulated_read_11016867	chr7	+	887	2	ISM	ENSMUSG00000005566.15	ENSMUST00000005705.8	3245	17	51	5704	51	-5694	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCTACTCCAAAGACATCG	NA	NA	NA	NA	NA	NA	NA	NA	12758129	12759258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_12758989_12759230
ONT_simulated_read_11018322	chr3	+	735	1	FSM	ENSMUSG00000105753.2	ENSMUST00000200070.2	1940	1	0	1205	0	-1205	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTAATATCTACTTATCAG	NA	NA	NA	NA	NA	NA	NA	NA	105410222	105410957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_105410200_105411000
ONT_simulated_read_11021102	chr7	-	1156	4	ISM	ENSMUSG00000002608.9	ENSMUST00000002683.3	3032	5	2921	1685	2921	-1685	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTACTTGCTTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	25415592	25412215	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_25412539_25413777_25413908_25414175_25414446_25415159
ONT_simulated_read_1102453	chr4	-	1023	4	ISM	ENSMUSG00000040795.13	ENSMUST00000046675.12	2639	5	475	1519	472	1454	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGAAGGCCACATGATTT	NA	NA	NA	NA	NA	NA	NA	NA	129512417	129510437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129510974_129511150_129511252_129511456_129511710_129512284
ONT_simulated_read_11025121	chr2	-	732	5	ISM	ENSMUSG00000026971.16	ENST00000428609.6	2387	13	20401	22737	20401	-22737	internal_fragment	FALSE	canonical	NA	NA	NA	NA	134	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGGAAGGGGTGACTGCT	NA	NA	NA	NA	NA	NA	NA	NA	60483606	60458219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_60458510_60458678_60458814_60464923_60465014_60480317_60480414_60483485
ONT_simulated_read_110274	chr5	-	811	1	ISM	ENSMUSG00000043733.15	ENSMUST00000100770.9	5599	16	57265	2789	57197	-2781	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGACAGTCATGGCTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	121272195	121271384	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_121271400_121272200
ONT_simulated_read_11028160	chr5	-	1098	7	ISM	ENSMUSG00000029554.16	ENST00000265854.12	1940	14	166705	-198	166705	198	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGTCTCTTGTCCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	140129788	139994681	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140129674
ONT_simulated_read_11030069	chr18	+	378	3	ISM	ENSMUSG00000024442.7	ENSMUST00000025314.7	2394	13	7993	1459	5432	-1459	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGGAACCTCGGCCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	38391304	38394223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_38391416_38392949_38393110_38394116
ONT_simulated_read_11032298	chr11	-	2343	13	NNC	ENSMUSG00000061306.17	novel	4578	17	NA	NA	12186	-1112	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATACTCAGAAAGAGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	120029952	119996389	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_119996860_119997259_119997437_119999292_119999317_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811
ONT_simulated_read_11032340	chrX	+	1307	11	ISM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	35	7346	35	-7333	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTGGAGAAAAGGAGATCC	NA	NA	NA	NA	NA	NA	NA	NA	47345773	47363984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677
ONT_simulated_read_11033221	chr11	-	992	1	ISM	ENSMUSG00000042506.16	ENSMUST00000041683.9	4434	13	20562	1717	20562	-1717	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGAATAGGAAGGCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	61045319	61044327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_61044300_61045300
ONT_simulated_read_1103430	chr19	-	394	1	ISM	ENSMUSG00000041491.9	ENSMUST00000047704.8	2548	15	28615	207	28615	-207	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAGAAAACAGAATAGT	NA	NA	NA	NA	NA	NA	NA	NA	15933738	15933344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_15933300_15933700
ONT_simulated_read_11035524	chr2	-	476	1	ISM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	11757	1656	11757	-1656	mono-exon	FALSE	NA	NA	NA	NA	NA	223	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGATGGTCACTCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	26812183	26811707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_26811700_26812200
ONT_simulated_read_11035983	chr15	-	1120	1	ISM	ENSMUSG00000061731.10	ENSMUST00000077273.9	7663	11	277347	3655	277347	-3655	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAGAAGCAGTTATGTG	NA	NA	NA	NA	NA	NA	NA	NA	52932208	52931088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_52931100_52932200
ONT_simulated_read_11036691	chr6	-	389	1	NIC	ENSMUSG00000014550.15	novel	5334	12	NA	NA	24466	-3359	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACAGGAGCAGTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	92167440	92167051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_92167100_92167400
ONT_simulated_read_11037385	chr4	-	987	6	ISM	ENSMUSG00000028809.17	ENSMUST00000030613.11	2940	17	8466	15860	8466	-15860	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAACTCGCCATTCCCCAA	NA	NA	NA	NA	NA	NA	NA	NA	135071981	135065203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809
ONT_simulated_read_11037594	chr15	+	1451	8	FSM	ENSMUSG00000072501.6	ENST00000337920.8	2281	8	-23	853	-23	-853	multi-exon	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATCAGGGTTTTTTGAC	NA	NA	NA	NA	NA	NA	NA	NA	66449453	66481780	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_66449697_66451921_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66475875_66476090_66476628_66476755_66481374
ONT_simulated_read_11040543	chr13	-	2433	1	ISM	ENSMUSG00000069206.15	ENSMUST00000075255.6	3238	4	8695	64	8654	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGACCGTGGCCCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	67591048	67588615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_67588600_67591000
ONT_simulated_read_11040603	chr8	+	1183	6	ISM	ENSMUSG00000012889.9	ENSMUST00000093380.5	2090	10	1829	380	593	-380	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGCCGAGGCCCTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	84854446	84858776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_84854524_84855198_84855356_84855892_84856009_84857159_84857818_84858526_84858676_84858750
ONT_simulated_read_110452	chr2	-	920	7	ISM	ENSMUSG00000074577.10	ENST00000327979.8	2704	19	15255	0	15255	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCCGTGATCAACGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	167827112	167822742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_167822841_167823190_167823282_167824698_167824783_167824963_167825167_167825615_167825778_167826364_167826527_167826992
ONT_simulated_read_11052786	chr17	+	337	1	NIC	ENSMUSG00000092395.2	novel	366	2	NA	NA	0	-89	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAAAAGCAAGGAAAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	34820124	34820461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_+_34820100_34820500
ONT_simulated_read_11055435	chr3	+	1975	1	FSM	ENSMUSG00000105176.2	ENSMUST00000197014.2	5342	1	0	3367	0	-3367	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGATGTTAGGGGTTGA	NA	NA	NA	NA	NA	NA	NA	NA	34124807	34126782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_34124800_34126800
ONT_simulated_read_11063141	chr11	+	864	10	ISM	ENSMUSG00000002059.19	ENSMUST00000002128.14	1368	11	10	585	10	-582	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGCAGCACTAACCTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	78079265	78082429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_78079338_78080003_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400
ONT_simulated_read_11063537	chr17	+	636	1	ISM	ENSMUSG00000050088.10	ENSMUST00000052691.9	2506	2	1994	123	1909	-121	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCTAAAGTTATCTGGAAT	NA	NA	NA	NA	NA	NA	NA	NA	15165439	15166075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_15165400_15166100
ONT_simulated_read_11069011	chr9	-	203	1	ISM	ENSMUSG00000037493.7	ENSMUST00000041901.7	1433	6	14737	485	14546	37	mono-exon	FALSE	NA	NA	NA	NA	NA	877	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAACTGCAACAGGGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	54452765	54452562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_54452600_54452800
ONT_simulated_read_11069854	chr2	+	686	8	ISM	ENSMUSG00000026739.14	ENSMUST00000028071.13	3594	10	262	2953	262	-2454	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTACTTACGATGCCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	18682090	18688487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_18682281_18686603_18686735_18687033_18687131_18687649_18687706_18687791_18687843_18687985_18688095_18688179_18688220_18688475
ONT_simulated_read_11077669	chr3	+	535	4	ISM	ENSMUSG00000027865.11	ENST00000369443.10	2836	14	24593	1150	24593	-924	internal_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCATTAATAGAAACTGGG	NA	NA	NA	NA	NA	NA	NA	NA	100101895	100113373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_100101946_100103858_100103914_100109289_100109434_100113087
ONT_simulated_read_11079933	chr9	+	535	3	ISM	ENSMUSG00000032002.11	ENSMUST00000034499.10	1122	7	18712	0	18548	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTCCGTTGAGTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	7203262	7207040	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_7203372_7203450_7203556_7206719
ONT_simulated_read_11081913	chr13	-	880	2	ISM	ENSMUSG00000021460.18	ENSMUST00000110031.4	3235	4	10592	2061	10452	-2061	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGCTGGGATTAAAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	53073125	53066306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_53067098_53073036
ONT_simulated_read_11082439	chr14	+	901	7	ISM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	0	17954	0	-17868	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGATTGCTGCCTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	122419115	122621692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_122419194_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609
ONT_simulated_read_1108410	chr6	+	697	6	NIC	ENSMUSG00000030228.20	novel	3640	28	NA	NA	-21034	87459	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTGGTTGGGATGAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	139661586	139700531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_+_139661621_139665714_139665911_139682619_139682752_139689031_139689147_139693824_139693956_139700442
ONT_simulated_read_11085313	chr8	+	600	4	ISM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	6264	167	6264	-167	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCCCTTATAGGAATGA	NA	NA	NA	NA	NA	NA	NA	NA	125455141	125460695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_125455222_125457530_125457756_125458535_125458681_125460545
ONT_simulated_read_11088767	chr7	-	192	1	NIC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	39848	-143	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGGCCCTGCTGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	29939910	29939718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_29939700_29939900
ONT_simulated_read_11090575	chr2	+	477	5	ISM	ENSMUSG00000036617.18	ENST00000376452.7	5522	19	279004	1655	61358	563	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCCTCCTTACCTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	20803482	20813564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_20803595_20806352_20806473_20810395_20810474_20812712_20812836_20813520
ONT_simulated_read_11094161	chrX	+	458	4	ISM	ENSMUSG00000025332.15	ENST00000382806.6	4101	24	36253	1171	36253	-1171	internal_fragment	FALSE	canonical	NA	NA	NA	NA	276	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGACAACAGCCTCCTCTA	NA	NA	NA	NA	NA	NA	NA	NA	151052801	151054099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_151052850_151053347_151053528_151053689_151053828_151054007
ONT_simulated_read_11099097	chr1	-	855	7	ISM	ENSMUSG00000025980.15	ENST00000678621.1	2268	10	2195	2417	2195	-2417	internal_fragment	FALSE	canonical	NA	NA	NA	NA	556	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCTTTTGAAAGGAAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	55123908	55119410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691
ONT_simulated_read_11099098	chr9	-	2400	12	ISM	ENSMUSG00000032228.17	ENST00000343827.7	3884	13	10762	1363	10762	-131	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGAATTGCTTTGTTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	71792571	71752924	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_71753843_71757053_71757208_71763586_71763820_71765765_71765929_71766121_71766237_71775353_71775561_71777355_71777430_71783270_71783350_71789998_71790064_71790388_71790534_71790937_71791078_71792464
ONT_simulated_read_1109937	chr13	-	812	5	ISM	ENSMUSG00000034675.18	ENSMUST00000109921.9	2378	14	6674	1181	6674	-1181	internal_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCCCCTGCTGAATGAGG	NA	NA	NA	NA	NA	NA	NA	NA	55629200	55622937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_55623350_55623958_55624130_55625363_55625494_55625589_55625650_55629161
ONT_simulated_read_11099762	chr4	+	458	5	ISM	ENSMUSG00000057530.15	ENSMUST00000102518.10	4816	20	60	38953	60	-38953	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCATGGACCCCACAGTAG	NA	NA	NA	NA	NA	NA	NA	NA	137589607	137653587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_137589693_137632380_137632467_137641078_137641166_137648331_137648474_137653529
ONT_simulated_read_1110129	chr11	-	338	1	ISM	ENSMUSG00000060923.6	ENSMUST00000074613.4	863	4	143167	92	143167	-92	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTCATATAAAAATATTATA	NA	NA	NA	NA	NA	NA	NA	NA	30456420	30456082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_30456100_30456400
ONT_simulated_read_1110138	chr9	-	2508	1	ISM	ENSMUSG00000032551.8	ENSMUST00000035154.4	3361	3	2920	484	2873	-484	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAACACCCCCACTAACCC	NA	NA	NA	NA	NA	NA	NA	NA	122777145	122774637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_122774600_122777100
ONT_simulated_read_11101571	chr7	+	1852	11	FSM	ENSMUSG00000035203.17	ENST00000270460.11	2474	11	43	579	0	-242	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAACGCTCACCCTGAACCA	NA	NA	NA	NA	NA	NA	NA	NA	5083291	5100623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_5083477_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
ONT_simulated_read_1110182	chr15	+	460	4	ISM	ENSMUSG00000022255.17	ENST00000519934.5	2171	11	48089	1505	48089	-1505	internal_fragment	TRUE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCACCGATGTTACAAGACA	NA	NA	NA	NA	NA	NA	NA	NA	34131309	34139972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_34131435_34134436_34134545_34136832_34136974_34139886
ONT_simulated_read_11104278	chr7	-	649	5	ISM	ENSMUSG00000030788.17	ENSMUST00000177462.8	859	7	10509	0	3688	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAATTGAAGTTACTGCT	NA	NA	NA	NA	NA	NA	NA	NA	110433048	110414789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_110414998_110415145_110415192_110420460_110420569_110424423_110424606_110432943
ONT_simulated_read_11108710	chr2	-	548	4	ISM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	5376	14298	4929	-14298	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAACCTGGAAGAGACAG	NA	NA	NA	NA	NA	NA	NA	NA	5012226	5009832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_5009923_5011154_5011390_5011877_5012013_5012138
ONT_simulated_read_11108896	chr17	-	904	1	ISM	ENSMUSG00000056515.10	ENSMUST00000070673.9	3473	7	118249	1871	118137	-1871	mono-exon	FALSE	NA	NA	NA	NA	NA	427	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTGGGGTGATCACTTC	NA	NA	NA	NA	NA	NA	NA	NA	65961498	65960594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_65960600_65961500
ONT_simulated_read_1111227	chr8	+	3094	9	ISM	ENSMUSG00000031960.15_ENSMUSG00000109941.2	ENST00000674512.1	3112	19	7782	-1490	7782	-602	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCGGGCAGACTGAGAGTT	NA	NA	NA	NA	NA	NA	NA	NA	111774543	111783694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ONT_simulated_read_11114760	chr10	-	1307	11	ISM	ENSMUSG00000019982.16	ENST00000525369.5	2871	13	33	15700	33	-1345	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACCACTGGGCAGAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	21032326	21016536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_21016577_21017657_21017784_21017870_21017986_21018860_21018992_21024230_21024336_21024676_21024758_21026204_21026440_21028334_21028556_21028790_21028884_21030582_21030655_21032238
ONT_simulated_read_11116190	chr10	-	478	4	NNC	ENSMUSG00000019942.14	novel	925	6	NA	NA	4980	-199	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGACAATCAGATTAAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	69180992	69174352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_69174427_69176310_69176453_69176544_69176705_69180890
ONT_simulated_read_11117202	chr12	-	709	4	ISM	ENSMUSG00000021200.15	ENSMUST00000149431.2	2283	8	3369	4334	3369	-4334	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCACCTCTGGCTCCCGAGC	NA	NA	NA	NA	NA	NA	NA	NA	103301263	103291738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_103291874_103296603_103296776_103299550_103299797_103301107
ONT_simulated_read_11118595	chr7	-	1016	1	ISM	ENSMUSG00000030726.17	ENSMUST00000032969.14	3069	12	37748	691	37610	591	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCTGGGAAGGAAGGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	99733024	99732008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_99732000_99733000
ONT_simulated_read_11118999	chr3	+	1043	6	FSM	ENSMUSG00000015750.16	ENST00000414276.6	1569	6	154	372	0	-348	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCATTTCTATCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	95801366	95804409	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_95801596_95802268_95802304_95802759_95802883_95803029_95803158_95803548_95803673_95804005
ONT_simulated_read_11121386	chr11	-	794	1	ISM	ENSMUSG00000001053.16	ENSMUST00000001080.16	2367	5	6728	258	6728	-258	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGAGGAGGAGGGTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	51534941	51534147	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_51534100_51534900
ONT_simulated_read_11122512	chr13	-	1456	4	ISM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	3251	0	3251	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCAAGTCTCATATCTG	NA	NA	NA	NA	NA	NA	NA	NA	64514869	64511027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681
ONT_simulated_read_1112275	chr8	-	1417	6	ISM	ENSMUSG00000031750.16	ENSMUST00000076846.11	1709	7	50277	98	50246	-98	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTGTGGGGTGCTGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	111482258	111468569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_111469081_111469275_111469412_111474874_111475037_111475294_111475373_111476056_111476191_111481862
ONT_simulated_read_11124499	chr8	+	1392	10	ISM	ENSMUSG00000031565.19	ENST00000341462.9	2966	17	36783	3461	23336	-3461	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATGATTGGGAAGCACA	NA	NA	NA	NA	NA	NA	NA	NA	26045632	26060208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_26045791_26047746_26047831_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056924_26058203_26058350_26059654_26059777_26060156
ONT_simulated_read_11125850	chr18	-	597	1	ISM	ENSMUSG00000024527.11	ENSMUST00000025408.10	3094	17	43668	144	43668	-144	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTCAGATCACTTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	67538574	67537977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_67538000_67538600
ONT_simulated_read_11126837	chr4	-	883	6	ISM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	15276	1822	15276	-1822	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTATTCACACCCTCCGCT	NA	NA	NA	NA	NA	NA	NA	NA	120940162	120918255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017
ONT_simulated_read_11129883	chr4	+	650	4	ISM	ENSMUSG00000057375.14	ENSMUST00000075693.12	1321	10	30191	-1	30191	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	213	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTCCTTCAGCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	107201750	107217020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_107201876_107202205_107202389_107207610_107207736_107216803
ONT_simulated_read_11134033	chr11	-	853	4	ISM	ENSMUSG00000035086.14	ENSMUST00000130916.8	4365	12	10753	2532	10716	-66	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	107	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAACAGCAAAGGTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	101182359	101179309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208
ONT_simulated_read_11134618	chrX	+	607	5	ISM	ENSMUSG00000000787.13	ENST00000441189.4	4139	16	6761	3737	6761	-3737	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTGGTTTGGGTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	13154023	13156154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_13154160_13154517_13154604_13155018_13155180_13155633_13155779_13156075
ONT_simulated_read_11136699	chr8	-	1223	5	ISM	ENSMUSG00000037852.9	ENSMUST00000048967.9	2117	9	83823	0	83823	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	378	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATGGTGTGCATTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	65062265	65045575	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_65046256_65047930_65048050_65050493_65050594_65059636_65059777_65062081
ONT_simulated_read_11137107	chr14	+	750	6	ISM	ENSMUSG00000022033.10	ENSMUST00000022612.10	1720	8	100	2581	100	-2581	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAACAATTAAAATCTGT	NA	NA	NA	NA	NA	NA	NA	NA	66043385	66052690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_66043584_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620
ONT_simulated_read_11137591	chr19	+	2118	10	ISM	ENSMUSG00000025060.16	ENSMUST00000026043.12	7278	18	40992	2584	40651	207	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGGTAGGAGCTAATT	NA	NA	NA	NA	NA	NA	NA	NA	47609108	47631101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_47609392_47610674_47610806_47611009_47611134_47613743_47613924_47623907_47624038_47624781_47624907_47625648_47625838_47626080_47626207_47627314_47627429_47630385
ONT_simulated_read_11138859	chr19	+	392	2	ISM	ENSMUSG00000024712.10	ENSMUST00000025617.4	2482	4	0	6110	0	-6110	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTACTGGCATTTATTAT	NA	NA	NA	NA	NA	NA	NA	NA	17371406	17372603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_17371757_17372561
ONT_simulated_read_11139596	chr17	+	781	6	ISM	ENSMUSG00000071074.10	ENSMUST00000095263.10	2035	9	45	1611	45	-1611	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGAGCCGAGCCTGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	46559050	46561852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719
ONT_simulated_read_11140095	chr3	-	275	1	NIC	ENSMUSG00000043300.3	novel	1139	3	NA	NA	23005	-1523	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGACCTCACGCCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	69483288	69483013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_69483000_69483300
ONT_simulated_read_1114042	chr15	+	914	7	ISM	ENSMUSG00000042535.10	ENSMUST00000046463.10	3449	12	17046	3827	17046	-3827	internal_fragment	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGCACAGGAGACAAGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	79592091	79601853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_79592245_79596296_79596421_79597564_79597680_79600047_79600193_79600286_79600470_79601183_79601320_79601795
ONT_simulated_read_11140608	chr7	-	530	3	FSM	ENSMUSG00000045114.11	ENST00000637565.1	1537	3	30	977	30	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAAGACTTTTCTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	126619499	126617875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126617903_126618055_126618178_126619118
ONT_simulated_read_11140771	chr4	-	258	2	ISM	ENSMUSG00000028494.13	ENSMUST00000000466.13	1888	8	9790	2076	9790	-2076	internal_fragment	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTGGAGTGGAAGAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	86578507	86576877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_86576953_86578324
ONT_simulated_read_11144579	chr6	-	1950	1	NIC	ENSMUSG00000070995.11	novel	2562	3	NA	NA	5126	-448	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACATGCTTGTGCACACAT	NA	NA	NA	NA	NA	NA	NA	NA	148510681	148508731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_148508700_148510700
ONT_simulated_read_11146067	chr4	-	629	1	NIC	ENSMUSG00000028822.12	novel	1204	7	NA	NA	16538	0	mono-exon	FALSE	NA	NA	NA	NA	NA	998	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTCTCGTTATACCTT	NA	NA	NA	NA	NA	NA	NA	NA	134625788	134625159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_134625200_134625800
ONT_simulated_read_11147547	chr7	-	465	2	ISM	ENSMUSG00000025789.10	ENST00000539113.5	1089	5	52557	91	52557	-91	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCATGCCCTTGGAATTC	NA	NA	NA	NA	NA	NA	NA	NA	73610710	73593018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_73593213_73610439
ONT_simulated_read_11148953	chr3	-	1332	8	ISM	ENSMUSG00000008730.18	ENSMUST00000029438.15	4185	16	36939	603	36758	-603	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCAGCCTCACCTGTATAC	NA	NA	NA	NA	NA	NA	NA	NA	103661633	103651578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_103651753_103652575_103652707_103654110_103654353_103656594_103656802_103657518_103657702_103658091_103658235_103660695_103660831_103661516
ONT_simulated_read_111492	chr19	+	536	5	NIC	ENSMUSG00000024857.17	novel	911	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACCGGCCTGGAGGATCC	NA	NA	NA	NA	NA	NA	NA	NA	4133518	4137155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_+_4133617_4135558_4135694_4136217_4136328_4136447_4136596_4137110
ONT_simulated_read_11149562	chr4	+	836	1	FSM	ENSMUSG00000064949.3	ENSMUST00000083015.3	130	1	-53	-653	-53	653	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTCTTTTTTATTTATT	NA	NA	NA	NA	NA	NA	NA	NA	132037497	132038333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_132037500_132038300
ONT_simulated_read_11151153	chr19	+	224	1	ISM	ENSMUSG00000024854.5	ENSMUST00000025773.5	913	4	0	1512	0	-963	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTGTTGTGAAGAAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	4281952	4282176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4282000_4282200
ONT_simulated_read_11152222	chr4	-	638	4	ISM	ENSMUSG00000028798.17	ENST00000677540.1	1035	8	5315	0	1752	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGGTCTCCATCCACAA	NA	NA	NA	NA	NA	NA	NA	NA	129488980	129485844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129486153_129487134_129487225_129487318_129487430_129488851
ONT_simulated_read_11153536	chr4	-	352	1	NIC	ENSMUSG00000054362.10	novel	1549	11	NA	NA	25577	0	mono-exon	FALSE	NA	NA	NA	NA	NA	436	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTGTGAAGCTAGAGCGT	NA	NA	NA	NA	NA	NA	NA	NA	106448858	106448506	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_106448500_106448900
ONT_simulated_read_11155553	chr2	-	1926	1	ISM	ENSMUSG00000027293.14	ENSMUST00000028755.8	3730	6	62931	575	62931	-575	mono-exon	FALSE	NA	NA	NA	NA	NA	438	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATACTTACGCCACCATT	NA	NA	NA	NA	NA	NA	NA	NA	119922156	119920230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_119920200_119922200
ONT_simulated_read_111561	chr10	-	863	7	ISM	ENSMUSG00000035041.9	ENSMUST00000117422.2	2294	12	8690	552	1747	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGAACCACTGCTCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	80926018	80920709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80920969_80921483_80921581_80921863_80921949_80922350_80922420_80924343_80924451_80925140_80925279_80925910
ONT_simulated_read_11157176	chr5	+	1300	11	ISM	ENSMUSG00000038023.13	ENSMUST00000037865.13	5345	20	117	11649	117	-11649	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCACCCCAGACTAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	124767233	124789870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_124767356_124770817_124770897_124773952_124774051_124775423_124775562_124777132_124777222_124779407_124779535_124782904_124782988_124783884_124783979_124784543_124784757_124789272_124789424_124789764
ONT_simulated_read_11157577	chr15	-	1406	2	ISM	ENSMUSG00000022440.10	ENSMUST00000023075.9	2402	3	2156	889	2123	-887	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGAGCACATACTGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	78411669	78408434	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_78409599_78411427
ONT_simulated_read_11160425	chr10	-	1612	1	ISM	ENSMUSG00000039232.13	ENSMUST00000042861.7	4173	3	22280	2162	22277	-2159	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATATGGGTGTAATTGTA	NA	NA	NA	NA	NA	NA	NA	NA	12817726	12816114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_12816100_12817700
ONT_simulated_read_11160503	chr15	-	162	1	ISM	ENSMUSG00000022453.9	ENSMUST00000023088.8	1913	10	8632	501	8588	-392	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACTGAGCCTGGACCACG	NA	NA	NA	NA	NA	NA	NA	NA	82214395	82214233	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_82214200_82214400
ONT_simulated_read_11162326	chr14	-	569	4	ISM	ENSMUSG00000022199.13	ENSMUST00000228495.3	2340	10	3273	1514	3273	-1514	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTGAGCCTGGCTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	55147282	55145721	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55145824_55145958_55146105_55146279_55146446_55147127
ONT_simulated_read_11166211	chr6	-	994	1	ISM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	47017	1419	45926	866	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAAGAGAGACTCGGAA	NA	NA	NA	NA	NA	NA	NA	NA	82704418	82703424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_82703400_82704400
ONT_simulated_read_11166865	chr13	-	284	1	ISM	ENSMUSG00000006715.12	ENSMUST00000006898.10	1127	7	9656	77	9656	-77	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGCATTTTCATTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	24936188	24935904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_24935900_24936200
ONT_simulated_read_11167838	chr7	+	420	1	FSM	ENSMUSG00002075214.1	ENSMUST00020182797.1	70	1	-266	-84	-266	84	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCCTCAGTCCTTCAACA	NA	NA	NA	NA	NA	NA	NA	NA	142131319	142131739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_142131300_142131700
ONT_simulated_read_11167965	chr4	+	445	4	ISM	ENSMUSG00000028676.18	ENSMUST00000097844.9	3055	6	6041	1946	6041	-1946	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGATTCCAAAACACATTATA	NA	NA	NA	NA	NA	NA	NA	NA	135589098	135591180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_135589189_135590350_135590514_135590836_135590888_135591039
ONT_simulated_read_11169042	chr10	-	555	3	ISM	ENSMUSG00000036099.17	ENSMUST00000118205.8	3705	12	51281	2712	51244	-2712	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTACACATTGAGGACAGAG	NA	NA	NA	NA	NA	NA	NA	NA	93820323	93810346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_93810408_93816175_93816370_93820023
ONT_simulated_read_11169448	chr5	-	2216	8	ISM	ENSMUSG00000001467.6	ENSMUST00000001507.5	3931	10	3412	983	3412	-983	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	169	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTTCTCTAAAAGTATGT	NA	NA	NA	NA	NA	NA	NA	NA	4151334	4132127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177
ONT_simulated_read_11169822	chr19	-	385	4	ISM	ENSMUSG00000025204.11	ENSMUST00000026222.11	680	5	454	100	426	97	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	476	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCACTATGATATCTGA	NA	NA	NA	NA	NA	NA	NA	NA	44543425	44538778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369
ONT_simulated_read_11173346	chr11	+	214	1	FSM	ENSMUSG00000082646.2	ENSMUST00000121688.2	180	1	0	-34	0	34	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTTTGCTCAGGCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	77530679	77530893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_77530700_77530900
ONT_simulated_read_11174576	chr1	-	1633	15	ISM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	4729	1433	1036	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTCTCTTATCCTTGAAC	NA	NA	NA	NA	NA	NA	NA	NA	58539539	58503362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399
ONT_simulated_read_11175501	chr3	+	1587	14	ISM	ENSMUSG00000063052.10	ENSMUST00000072080.10	4142	15	40	4758	40	-4758	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGTTCTGATCAGTAACAA	NA	NA	NA	NA	NA	NA	NA	NA	157742338	157769366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_157742514_157746077_157746260_157747222_157747297_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320
ONT_simulated_read_11177385	chr17	-	1347	3	ISM	ENSMUSG00000056692.14	ENSMUST00000114859.9	3573	5	34274	1705	34184	256	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCAGTGTGGGTGGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	28005242	27971924	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_27972970_27987109_27987214_28005044
ONT_simulated_read_11177824	chr17	-	1381	2	ISM	ENSMUSG00000024087.5	ENSMUST00000234361.2	3398	4	4391	587	4371	-528	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTACTTCAGATCAGTGCG	NA	NA	NA	NA	NA	NA	NA	NA	80018099	80014909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_80015931_80017739
ONT_simulated_read_1118248	chr8	-	656	8	ISM	ENSMUSG00000037260.9	ENSMUST00000037609.8	2694	18	5055	12849	5055	-12849	internal_fragment	TRUE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCAACGAGGATGTTCAAA	NA	NA	NA	NA	NA	NA	NA	NA	26461726	26447329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26447379_26449610_26449642_26450853_26450931_26453382_26453487_26454821_26454892_26458390_26458461_26461074_26461197_26461593
ONT_simulated_read_11184891	chr8	-	691	4	ISM	ENSMUSG00000033732.11	ENSMUST00000042012.7	4525	26	49	31531	49	-31531	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAAGGTGTCTCCCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	111573359	111568401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_111568576_111569319_111569647_111571094_111571232_111573306
ONT_simulated_read_11189365	chr18	-	1176	1	ISM	ENSMUSG00000051469.15	ENSMUST00000066497.12	5732	4	6145	3788	5655	435	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTACTAATTAAAATGGTT	NA	NA	NA	NA	NA	NA	NA	NA	24147722	24146546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_24146500_24147700
ONT_simulated_read_11191424	chrX	-	1427	1	ISM	ENSMUSG00000006423.16	ENSMUST00000115248.10	3340	7	13084	1193	12970	-1186	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCACCTTCCCAGTTATTC	NA	NA	NA	NA	NA	NA	NA	NA	36114815	36113388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_36113400_36114800
ONT_simulated_read_11193150	chr16	-	971	3	ISM	ENSMUSG00000022500.16	ENSMUST00000117360.8	763	4	8929	-360	8929	360	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	364	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCCAAGTGCACAGAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	10784514	10778327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_10778916_10781120_10781278_10784288
ONT_simulated_read_11196935	chr4	-	569	2	ISM	ENSMUSG00000028843.9	ENSMUST00000030651.9	743	3	704	0	654	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGTGGTGTCCGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	133855396	133854716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_133855118_133855228
ONT_simulated_read_111983	chr10	+	846	6	ISM	ENSMUSG00000019923.15	ENSMUST00000160337.2	1138	8	1341	120	1341	-120	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACAAGACTTTGTGGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	72492068	72504877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72504643
ONT_simulated_read_11198500	chr16	-	438	1	ISM	ENSMUSG00000060166.7	ENSMUST00000076957.7	4868	11	13454	492	13328	-186	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCAGCATGACCTTTACC	NA	NA	NA	NA	NA	NA	NA	NA	18039546	18039108	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_18039100_18039500
ONT_simulated_read_1120009	chr7	+	220	1	ISM	ENSMUSG00000037049.10	ENSMUST00000046983.10	2412	6	1331	2479	1331	-2479	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAATCTTCACAATGGC	NA	NA	NA	NA	NA	NA	NA	NA	105204897	105205117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105204900_105205100
ONT_simulated_read_1120300	chr14	-	610	8	ISM	ENSMUSG00000033885.16	ENST00000383715.8	1659	17	46363	32	46339	-32	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATACTGTGTTTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	14325179	14309708	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_14309775_14314427_14314491_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061
ONT_simulated_read_11203673	chr11	-	763	4	ISM	ENSMUSG00000020526.13	ENSMUST00000103195.5	998	5	236	124	236	-124	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATCATAAATACCAAGTATA	NA	NA	NA	NA	NA	NA	NA	NA	84806956	84801899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_84802475_84804047_84804129_84805036_84805112_84806924
ONT_simulated_read_11204563	chr14	+	423	1	ISM	ENSMUSG00000095463.9	ENSMUST00000184973.8	3589	13	29438	236	19025	-236	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGACTTCACATTTATGA	NA	NA	NA	NA	NA	NA	NA	NA	69604060	69604483	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_69604100_69604500
ONT_simulated_read_11210557	chr16	-	259	1	ISM	ENSMUSG00000033157.18	ENSMUST00000066983.13	2848	5	11036	1936	8585	135	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATTGATGACTTGATTG	NA	NA	NA	NA	NA	NA	NA	NA	45552282	45552023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_45552000_45552300
ONT_simulated_read_11210860	chr7	+	689	5	ISM	ENSMUSG00000030451.17	ENST00000619021.4	4806	30	-33	32732	-33	17660	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCTGTGGAGGTTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	55717731	55782294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_55717847_55744012_55744187_55780916_55781088_55781546_55781651_55782169
ONT_simulated_read_11213934	chr5	-	343	2	ISM	ENSMUSG00000037344.15	ENST00000415287.5	1626	10	25	7200	25	-7200	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGTTTCTGGCTCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	137330916	137326863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137327008_137330717
ONT_simulated_read_11214111	chr9	+	182	3	ISM	ENSMUSG00000032245.13	ENST00000636314.1	328	4	7145	0	7145	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCCTGGTGGTGCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	62753296	62756478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_62753335_62754866_62754923_62756390
ONT_simulated_read_11216036	chr10	+	1791	14	ISM	ENSMUSG00000069601.15	ENST00000503366.5	5596	43	90655	44424	-26426	-36196	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAAGGTAAATAATCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	69734898	69815267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_69734920_69740027_69740101_69740277_69740341_69756267_69756322_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147
ONT_simulated_read_11218375	chr10	-	899	1	ISM	ENSMUSG00000071359.14	ENSMUST00000127698.8	2873	7	25572	1098	25572	404	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACCCTTGTTATTCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	22581774	22580875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_22580900_22581800
ONT_simulated_read_11222242	chr16	-	426	1	ISM	ENSMUSG00000022641.16	ENSMUST00000138166.8	8743	17	207118	33003	105721	-27688	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAGAAAAACAAACT	NA	NA	NA	NA	NA	NA	NA	NA	50045635	50045209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_50045200_50045600
ONT_simulated_read_11222742	chr5	-	1799	6	ISM	ENSMUSG00000038056.16	ENST00000683616.1	3041	15	113014	-1	9792	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	144	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTAAATAAAACAGTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	25590757	25577297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_25578468_25579487_25579566_25580339_25580454_25580873_25581026_25582110_25582281_25590642
ONT_simulated_read_11226992	chr10	-	748	5	ISM	ENSMUSG00000019467.16	ENSMUST00000218654.2	2475	15	4316	329	4316	-136	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATGAAGATGAGCTGTAAC	NA	NA	NA	NA	NA	NA	NA	NA	127020325	127018723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260
ONT_simulated_read_11227355	chr7	-	150	1	NIC	ENSMUSG00000039391.12	novel	2439	15	NA	NA	21158	0	mono-exon	FALSE	NA	NA	NA	NA	NA	309	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTTGAACCTACTATTTCC	NA	NA	NA	NA	NA	NA	NA	NA	89515855	89515705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_89515700_89515900
ONT_simulated_read_11229795	chr9	+	877	6	ISM	ENSMUSG00000032564.17	ENSMUST00000077190.7	3409	13	0	111998	0	49476	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGACTCAACAGCTTGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	104446985	104799745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_104447301_104563623_104563805_104749877_104750058_104777416_104777489_104778642_104778718_104799691
ONT_simulated_read_11230651	chr10	-	1373	1	ISM	ENSMUSG00000048696.12	ENSMUST00000105350.3	3266	2	5330	602	5330	-602	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATTAAGACGCCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	80218163	80216790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80216800_80218200
ONT_simulated_read_11233481	chr3	-	242	2	NNC	ENSMUSG00000039058.12	novel	275	2	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	1759	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACTAAGTGGAAACAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	152178548	152169571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_-_152169659_152178393
ONT_simulated_read_11233854	chr11	-	1470	12	ISM	ENSMUSG00000037275.15	ENST00000285873.8	4488	28	13290	15292	13290	-15292	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTCCAGGCTGCAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	58045981	58027748	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_58027822_58028493_58028590_58029844_58029968_58030320_58030435_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927
ONT_simulated_read_11234642	chr15	+	1056	1	ISM	ENSMUSG00000116114.2	ENSMUST00000229584.2	2534	5	81525	366	39673	-366	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCCCTGCTTCCTCGATT	NA	NA	NA	NA	NA	NA	NA	NA	101302293	101303349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_101302300_101303300
ONT_simulated_read_11241021	chr14	+	1428	11	ISM	ENSMUSG00000022136.9	ENSMUST00000022734.9	5141	12	0	4881	0	-1625	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGACATAGCAGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	119175387	119214228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_119175583_119190520_119190632_119195279_119195405_119198197_119198273_119205400_119205554_119207511_119207694_119208094_119208215_119209774_119209881_119210104_119210226_119212543_119212677_119214121
ONT_simulated_read_11241612	chr14	+	478	3	ISM	ENSMUSG00000004562.17	ENSMUST00000182760.8	5130	24	-1	16725	0	-16724	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCCAGTGCCCAGTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	52222365	52226355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_52222449_52224859_52225058_52226158
ONT_simulated_read_1124238	chr11	-	2292	13	ISM	ENSMUSG00000061306.17	ENSMUST00000103018.11	4578	17	12217	1661	12183	-1169	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGAAGGCTCCGAAGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	120029955	119996446	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_119996863_119997259_119997437_119999292_119999317_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811
ONT_simulated_read_11242657	chr6	+	1579	12	FSM	ENSMUSG00000029925.14	ENST00000652056.1	1688	12	110	-1	44	1	multi-exon	TRUE	canonical	NA	NA	NA	NA	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTGGGAAAGAGGAAGCACT	NA	NA	NA	NA	NA	NA	NA	NA	38895957	39061315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_38896176_38925475_38925570_38928811_38928865_38959054_38959152_38978185_38978303_38994825_38994915_38997972_38998122_38999902_39000034_39004573_39004889_39048289_39048382_39057872_39058011_39061229
ONT_simulated_read_1124540	chr10	-	4776	9	ISM	ENSMUSG00000074802.12	ENSMUST00000099374.9	6748	11	9605	1753	9580	-1313	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTAGTCATATAGGGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	89270224	89246437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89269675_89270151
ONT_simulated_read_1124732	chr13	-	896	7	ISM	ENSMUSG00000069089.9	ENSMUST00000091299.8	1988	12	13273	679	13234	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGATTTATGATTAGAG	NA	NA	NA	NA	NA	NA	NA	NA	100854174	100839817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079
ONT_simulated_read_11254730	chr10	-	1456	11	ISM	ENSMUSG00000034024.9	ENST00000544368.6	1657	14	1469	-52	1469	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	NA	NA	NA	NA	NA	NA	NA	NA	116897487	116886905	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_116887182_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409
ONT_simulated_read_11257816	chrX	-	321	4	ISM	ENSMUSG00000071708.12	ENSMUST00000112529.8	3717	11	36193	2298	36193	-2298	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGCTAAGCCTTAAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	156239090	156229148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989
ONT_simulated_read_11259300	chr1	+	1867	14	ISM	ENSMUSG00000041642.19	ENST00000360529.9	5300	33	15762	384	15762	-384	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTTCTCTCGCTCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	136088095	136101947	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_136088144_136089143_136089310_136089466_136089519_136089701_136089760_136090524_136090731_136090810_136090889_136092755_136092870_136096924_136097062_136097726_136097908_136098879_136099045_136099325_136099444_136099896_136100068_136100540_136100741_136101774
ONT_simulated_read_11260393	chr7	-	279	1	ISM	ENSMUSG00000019194.16	ENSMUST00000211945.2	1501	5	9707	335	8082	0	mono-exon	FALSE	NA	NA	NA	NA	NA	249	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTGAGGCGAGGGGGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	30816562	30816283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_30816300_30816600
ONT_simulated_read_11266312	chr14	-	176	1	ISM	ENSMUSG00000054733.10	ENSMUST00000067927.9	1860	11	332550	553	190403	0	mono-exon	FALSE	NA	NA	NA	NA	NA	910	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTGTCCCTGAAGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	64360802	64360626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_64360600_64360800
ONT_simulated_read_1126740	chr6	-	1756	15	ISM	ENSMUSG00000063884.7	ENSMUST00000082094.5	2581	24	12758	102	12758	-102	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATGCTCTTAGAACTAAT	NA	NA	NA	NA	NA	NA	NA	NA	71872976	71857725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888
ONT_simulated_read_11269894	chr9	+	850	7	ISM	ENSMUSG00000034973.17	ENST00000237163.9	7969	39	20074	51600	1857	-51600	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGAAAGCACTCTCATGC	NA	NA	NA	NA	NA	NA	NA	NA	86369316	86385080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_86369489_86371630_86371802_86374033_86374224_86376448_86376548_86382848_86382949_86383953_86384037_86385045
ONT_simulated_read_11270434	chr9	+	605	4	ISM	ENSMUSG00000059183.13	ENSMUST00000074792.7	2042	9	6	12657	6	-12657	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCACATCAAAGGAATTGGA	NA	NA	NA	NA	NA	NA	NA	NA	65343069	65347679	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627
ONT_simulated_read_11271746	chr16	-	694	6	ISM	ENSMUSG00000002847.8	ENSMUST00000002926.8	1974	11	17693	9420	1812	-8198	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAGTAGGGAGGAAAAGAC	NA	NA	NA	NA	NA	NA	NA	NA	38235814	38225898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_38225989_38227953_38228122_38229956_38230047_38232447_38232550_38235130_38235240_38235679
ONT_simulated_read_11275184	chr1	-	737	7	ISM	ENSMUSG00000044783.17	ENSMUST00000054674.15	4878	8	351	3878	224	-1371	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGACCCTCACGCAAGC	NA	NA	NA	NA	NA	NA	NA	NA	88205004	88194070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940
ONT_simulated_read_11278795	chr4	-	1336	10	ISM	ENSMUSG00000028577.14	ENSMUST00000107107.9	2784	14	13196	6043	13196	-6043	internal_fragment	TRUE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGGTATGGACACCACCA	NA	NA	NA	NA	NA	NA	NA	NA	94478285	94463446	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_94463472_94466623_94466693_94470717_94470938_94471650_94471809_94472069_94472240_94474531_94474668_94474989_94475158_94475517_94475639_94475723_94475825_94478117
ONT_simulated_read_11281376	chr8	-	638	1	ISM	ENSMUSG00000001062.19	ENSMUST00000122363.8	2952	15	11174	181	10918	-178	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGACATCCTGCCCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	123969913	123969275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123969300_123969900
ONT_simulated_read_11283271	chr2	-	536	4	ISM	ENSMUSG00000026679.4	ENSMUST00000027992.3	1199	5	8589	350	-2275	-350	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATCCCTCTCGGTCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	21201587	21185891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_21185930_21193977_21194125_21199085_21199310_21201460
ONT_simulated_read_11284479	chr9	-	953	1	NIC	ENSMUSG00000032803.16	novel	3387	5	NA	NA	8868	873	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGACTGACTGAAGACC	NA	NA	NA	NA	NA	NA	NA	NA	103233228	103232275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_103232300_103233200
ONT_simulated_read_11284549	chr3	+	566	4	ISM	ENSMUSG00000028060.15	ENSMUST00000029696.11	2981	14	22977	1096	22930	-1096	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATAGTGGACAGAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	88616086	88619135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_88616249_88617136_88617250_88618067_88618160_88618936
ONT_simulated_read_11286256	chr3	-	1076	1	NIC	ENSMUSG00000054942.14	novel	4965	16	NA	NA	6773	-1130	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCCATGCAAAGCTGTACT	NA	NA	NA	NA	NA	NA	NA	NA	152039237	152038161	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_152038200_152039200
ONT_simulated_read_11287035	chr17	-	422	2	ISM	ENSMUSG00000051977.17	ENST00000449207.8	1717	9	9411	402	9411	-402	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCAACAACCTTTCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	15773793	15765380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_15765623_15773613
ONT_simulated_read_11295826	chr7	-	257	1	NIC	ENSMUSG00000052833.10	novel	1254	10	NA	NA	59880	-599	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGAGAGAGAGCATCATA	NA	NA	NA	NA	NA	NA	NA	NA	16061830	16061573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_16061600_16061800
ONT_simulated_read_11295990	chr16	-	528	4	ISM	ENSMUSG00000022519.15	ENSMUST00000023161.8	5000	7	29211	6054	29211	-6054	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGGTAATTTAGGAGACG	NA	NA	NA	NA	NA	NA	NA	NA	4311728	4304145	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4304375_4305356_4305474_4310157_4310254_4311642
ONT_simulated_read_11296581	chr15	+	708	6	ISM	ENSMUSG00000015002.19	ENSMUST00000173858.8	2848	23	7	39494	2	4290	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGGTTCGCAAAACAGT	NA	NA	NA	NA	NA	NA	NA	NA	65658896	65701606	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_65659096_65687183_65687261_65690281_65690410_65691568_65691720_65696462_65696585_65701575
ONT_simulated_read_1129688	chr2	-	473	1	NIC	ENSMUSG00000002105.16	novel	1884	8	NA	NA	2609	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	872	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCGCTGGCTTCCTGACC	NA	NA	NA	NA	NA	NA	NA	NA	90896470	90895997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_90896000_90896500
ONT_simulated_read_11303117	chr1	-	1069	1	ISM	ENSMUSG00000025932.15	ENSMUST00000027066.13	4347	18	139228	950	133598	-238	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGTATTGGTTAGTT	NA	NA	NA	NA	NA	NA	NA	NA	14241196	14240127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_14240100_14241200
ONT_simulated_read_11304558	chr7	-	1689	1	ISM	ENSMUSG00000038520.16	ENSMUST00000047085.16	8750	17	10356	2408	10167	-2408	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGAAGAGGAAGTAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	44488143	44486454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44486500_44488100
ONT_simulated_read_11306125	chr11	-	395	5	ISM	ENSMUSG00000025137.16	ENSMUST00000106188.4	1486	13	5345	712	5345	-712	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGACCCCTACCAGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	120503406	120501954	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288
ONT_simulated_read_11310251	chr4	-	687	8	ISM	ENSMUSG00000028898.16	ENSMUST00000030730.14	1130	9	1017	212	968	-212	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGAGTTCATGGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	132055832	132039285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132055779
ONT_simulated_read_11312182	chr7	-	1096	1	NIC	ENSMUSG00000030718.10	novel	2772	14	NA	NA	44424	-51	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTTATTTATGATCTTG	NA	NA	NA	NA	NA	NA	NA	NA	99977090	99975994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_99976000_99977100
ONT_simulated_read_11313845	chr4	-	687	1	ISM	ENSMUSG00000050812.19	ENSMUST00000102889.10	7045	49	112438	714	111616	-705	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCTAATCACTGGATTCT	NA	NA	NA	NA	NA	NA	NA	NA	58800311	58799624	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_58799600_58800300
ONT_simulated_read_11315849	chr12	-	1070	1	NIC	ENSMUSG00000037904.15	novel	2577	3	NA	NA	496	-261	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGGTGAGGACAAGTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	110944193	110943123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_110943100_110944200
ONT_simulated_read_11319106	chr1	+	1237	11	ISM	ENSMUSG00000038936.14	ENSMUST00000040538.10	1948	12	50	1455	50	-1455	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCATGACTTTTCTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	179495824	179513299	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_179496111_179498147_179498261_179503955_179504037_179505605_179505736_179506444_179506495_179507149_179507281_179508056_179508175_179508997_179509118_179509215_179509273_179511769_179511882_179513260
ONT_simulated_read_11320643	chrX	-	754	1	ISM	ENSMUSG00000050379.16	ENSMUST00000053456.11	4673	11	74331	1126	74331	459	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCTTGAAATCACAAAACAG	NA	NA	NA	NA	NA	NA	NA	NA	36178978	36178224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_36178200_36179000
ONT_simulated_read_11322934	chr6	-	1733	12	ISM	ENSMUSG00000029676.16	ENSMUST00000166445.8	1923	15	22217	-80	18859	80	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTATTGTGAAAAAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	25775799	25744499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523
ONT_simulated_read_11324287	chr16	+	571	4	ISM	ENSMUSG00000052133.17	ENSMUST00000120756.8	4646	21	0	31421	0	-31413	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATGTCTCCCTCCTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	35361731	35453210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_35361973_35442946_35443151_35448379_35448480_35453184
ONT_simulated_read_11325014	chr6	+	783	7	ISM	ENSMUSG00000030341.18	ENSMUST00000032491.15	2156	10	8042	706	8042	-706	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATCGAGAGGCTGGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	125334727	125338741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_125334834_125335016_125335096_125337459_125337537_125337672_125337787_125338054_125338084_125338261_125338548_125338649
ONT_simulated_read_1132699	chr5	-	1067	6	ISM	ENSMUSG00000023452.20	ENSMUST00000061895.16	2183	8	20716	929	-18618	-806	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCTCGGTTGTGGCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	32922274	32894573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116
ONT_simulated_read_11328522	chr4	+	866	8	ISM	ENSMUSG00000028886.16	ENST00000436342.6	2388	17	2	28780	0	-28780	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCAGAGGACCAGACTTCA	NA	NA	NA	NA	NA	NA	NA	NA	132366356	132420460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_132366467_132384003_132384100_132389205_132389250_132397499_132397567_132400206_132400344_132408066_132408205_132417015_132417102_132420272
ONT_simulated_read_11328525	chr11	+	579	1	FSM	ENSMUSG00000104740.3	ENSMUST00000196236.3	110	1	0	-469	0	469	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTACTCCTGGGTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	116968173	116968752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_116968200_116968800
ONT_simulated_read_11330136	chr11	-	284	1	ISM	ENSMUSG00000078974.11	ENSMUST00000109643.8	1862	4	6677	994	6262	114	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTCTGCCTTAGACTGT	NA	NA	NA	NA	NA	NA	NA	NA	16451807	16451523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_16451500_16451800
ONT_simulated_read_113334	chr4	+	639	4	NIC	ENSMUSG00000028647.14	novel	633	4	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTGAGCATAGTAGGCAC	NA	NA	NA	NA	NA	NA	NA	NA	123798833	123805274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_+_123798881_123799026_123799100_123803629_123803760_123804885
ONT_simulated_read_11333983	chr10	-	1023	1	ISM	ENSMUSG00000075232.7	ENSMUST00000099945.6	3204	8	12756	950	12756	-950	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTAATGGAGTGCCTACTA	NA	NA	NA	NA	NA	NA	NA	NA	40165426	40164403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_40164400_40165400
ONT_simulated_read_1133435	chrX	-	1660	1	ISM	ENSMUSG00000086503.5	ENSMUST00000127786.4	17946	7	2228	19001	2228	-19001	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAGTCATGGAATTTCA	NA	NA	NA	NA	NA	NA	NA	NA	102524632	102522972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_102523000_102524600
ONT_simulated_read_11338977	chrX	-	2647	1	ISM	ENSMUSG00000051220.3	ENSMUST00000056904.3	5302	2	10258	2471	10216	-1065	mono-exon	FALSE	NA	NA	NA	NA	NA	290	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACCCATGATTGAAATATC	NA	NA	NA	NA	NA	NA	NA	NA	101190439	101187792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_101187800_101190400
ONT_simulated_read_11340091	chr2	-	1671	1	ISM	ENSMUSG00000000876.12	ENSMUST00000000896.11	2789	4	15637	643	15617	-643	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTAACTCTGTAGACCAG	NA	NA	NA	NA	NA	NA	NA	NA	154429991	154428320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_154428300_154430000
ONT_simulated_read_11340670	chr11	-	712	1	ISM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	21949	501	15094	-501	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCGGGCACACATGAAGTAC	NA	NA	NA	NA	NA	NA	NA	NA	60680142	60679430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_60679400_60680100
ONT_simulated_read_1134358	chr17	-	413	2	ISM	ENSMUSG00000024118.15	ENSMUST00000024930.8	2166	10	479	4727	479	-4727	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTCATCTGCTCATCACAC	NA	NA	NA	NA	NA	NA	NA	NA	24439285	24438754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24439108_24439225
ONT_simulated_read_11346257	chr15	-	660	1	ISM	ENSMUSG00000018040.10	ENSMUST00000018184.10	4363	7	5830	2879	5830	-2879	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCTTGTTCATGTGGATG	NA	NA	NA	NA	NA	NA	NA	NA	83001172	83000512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_83000500_83001200
ONT_simulated_read_11346655	chr5	+	700	5	ISM	ENSMUSG00000029141.17	ENST00000618046.4	2167	14	8843	5313	-4275	-5107	internal_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTACTTCAGTTTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	31693479	31706025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31693669_31697729_31697842_31701013_31701258_31703523_31703611_31705957
ONT_simulated_read_11348823	chr5	+	318	1	ISM	ENSMUSG00000037210.17	ENST00000637812.2	5545	21	5	116206	0	-115497	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCGCGGCGGCGGCGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	34527276	34527594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_34527300_34527600
ONT_simulated_read_11349756	chr11	-	1141	9	ISM	ENSMUSG00000020182.17	ENSMUST00000109659.9	1954	15	43728	-2	18349	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	11796680	11764100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635
ONT_simulated_read_11351253	chr8	-	428	1	ISM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	33123	1026	13263	360	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTACACCAGTAGTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	41794687	41794259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_41794300_41794700
ONT_simulated_read_1135294	chr4	+	726	6	ISM	ENSMUSG00000028757.5	ENSMUST00000030538.5	2120	11	0	2425	0	-2425	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCTTGGTTTTGGACATC	NA	NA	NA	NA	NA	NA	NA	NA	138032040	138037514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494
ONT_simulated_read_11354790	chr15	-	667	1	ISM	ENSMUSG00000023021.16	ENSMUST00000109035.11	2775	11	36527	388	36527	323	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGCATTCTAAGAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	99633816	99633149	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_99633100_99633800
ONT_simulated_read_11358237	chr12	-	291	3	ISM	ENSMUSG00000059436.14	ENST00000555667.5	564	4	8920	66	8749	15	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGGAAGATGCAAGTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	77000050	76986229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_76986289_76986740_76986865_76999942
ONT_simulated_read_1136039	chr1	+	894	9	FSM	ENSMUSG00000053153.15	ENST00000272898.11	861	9	-33	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	639	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGTTGGATATAAATCAAA	NA	NA	NA	NA	NA	NA	NA	NA	69866150	69935701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_69866281_69882127_69882175_69883437_69883534_69892481_69892601_69897631_69897770_69909422_69909531_69912292_69912411_69926650_69926718_69935630
ONT_simulated_read_1136072	chr8	-	1074	1	NIC	ENSMUSG00000035824.8	novel	2406	10	NA	NA	15098	-583	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGCCGTAACTGTGCACT	NA	NA	NA	NA	NA	NA	NA	NA	104954984	104953910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_104953900_104955000
ONT_simulated_read_11360731	chr5	+	534	4	ISM	ENSMUSG00000029146.15	ENST00000537606.5	2312	14	3	3409	0	-3043	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGTGGTTGTTGAAGACA	NA	NA	NA	NA	NA	NA	NA	NA	31350570	31353201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31350810_31352139_31352258_31352758_31352824_31353089
ONT_simulated_read_11360861	chr1	-	1314	1	ISM	ENSMUSG00000016526.9	ENSMUST00000016670.9	3164	3	8097	1475	8097	-1475	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGGGACCCCTCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	131057980	131056666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_131056700_131058000
ONT_simulated_read_11361014	chr6	-	632	4	ISM	ENSMUSG00000004268.12	ENSMUST00000004379.8	1034	6	6519	0	6519	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	475	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTTCAGACCTGATT	NA	NA	NA	NA	NA	NA	NA	NA	124682622	124681343	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477
ONT_simulated_read_11362907	chr7	-	382	1	ISM	ENSMUSG00000043866.12	ENSMUST00000141116.2	4281	5	4020	567	4020	-567	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAACTCCTTCCCTAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	105389548	105389166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105389200_105389500
ONT_simulated_read_11369044	chr16	+	208	1	ISM	ENSMUSG00000014075.16	ENSMUST00000014220.15	838	5	0	9190	0	-9186	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATTTTCCAGCAAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	32238519	32238727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_32238500_32238700
ONT_simulated_read_11373628	chr6	-	1291	1	NIC	ENSMUSG00000000938.12	novel	2565	2	NA	NA	2158	-294	mono-exon	FALSE	NA	NA	NA	NA	NA	300	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGAGATATTGTTTGGATT	NA	NA	NA	NA	NA	NA	NA	NA	52209761	52208470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_52208500_52209800
ONT_simulated_read_11378629	chr5	-	408	2	ISM	ENSMUSG00000029416.18	ENSMUST00000031367.15	2732	8	387	13205	387	-13205	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCACCAAGCCTCCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	127694093	127685932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_127686126_127693878
ONT_simulated_read_11380840	chr9	-	844	5	ISM	ENSMUSG00000006235.7	ENSMUST00000006397.7	1761	8	1913	406	1913	-406	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGACCCCAGCTCTCAGC	NA	NA	NA	NA	NA	NA	NA	NA	21872889	21870598	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21870967_21871056_21871145_21871819_21871908_21871985_21872140_21872743
ONT_simulated_read_1138193	chr17	+	1435	10	ISM	ENSMUSG00000023952.14	ENSMUST00000172170.8	2587	13	45	2004	45	-2004	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGAGCAGGTCAGGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	46472036	46478258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_46472253_46474408_46474436_46475119_46475305_46475650_46475760_46475911_46476110_46476380_46476556_46476703_46476924_46477236_46477373_46477517_46477577_46478148
ONT_simulated_read_11381978	chr10	-	582	1	ISM	ENSMUSG00000069516.9	ENSMUST00000092163.9	1316	4	4157	252	4157	-252	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCCTTTCATCTTGCTTA	NA	NA	NA	NA	NA	NA	NA	NA	117114069	117113487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_117113500_117114100
ONT_simulated_read_11383753	chr2	-	515	2	ISM	ENSMUSG00000026809.16	ENST00000356311.10	725	4	2258	632	2258	-632	internal_fragment	FALSE	canonical	NA	NA	NA	NA	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGTACTTGGCTTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	28583807	28582728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_28583072_28583635
ONT_simulated_read_11383942	chr5	-	554	3	ISM	ENSMUSG00000029524.17	ENSMUST00000112067.8	1645	5	3800	323	3800	-323	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCACCCTCCTGTTTACA	NA	NA	NA	NA	NA	NA	NA	NA	115618556	115616391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_115616468_115617660_115617872_115618289
ONT_simulated_read_11388049	chr11	+	503	7	ISM	ENSMUSG00000020739.12	ENSMUST00000021085.11	2230	19	91	13964	91	-13964	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGACTGGGTCCGACTGCA	NA	NA	NA	NA	NA	NA	NA	NA	115455350	115460847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824
ONT_simulated_read_11389225	chrX	-	1048	6	ISM	ENSMUSG00000035725.14	ENSMUST00000036333.14	4146	9	23042	1935	22736	-1935	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTATTTAGTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	76816842	76806951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_76807498_76807711_76807861_76808178_76808257_76808954_76809013_76814852_76814949_76816721
ONT_simulated_read_11397292	chr8	-	483	5	ISM	ENSMUSG00000031537.16	ENSMUST00000063401.10	3977	21	12667	19021	12656	-19021	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGGCCTGGCCCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	23183938	23168804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830
ONT_simulated_read_11397297	chr13	-	400	1	ISM	ENSMUSG00000021629.11	ENSMUST00000067246.6	3179	16	29994	386	29907	-187	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGAATGGACGCATAATGA	NA	NA	NA	NA	NA	NA	NA	NA	100939941	100939541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_100939500_100939900
ONT_simulated_read_11403604	chr11	+	992	6	FSM	ENSMUSG00000020513.16	ENST00000539018.5	1046	6	-6	60	0	-60	multi-exon	FALSE	canonical	NA	NA	NA	NA	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGAGGAGGAAGACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	86435816	86457892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_86436057_86445898_86446131_86448550_86448716_86452061_86452203_86456510_86456695_86457862
ONT_simulated_read_11405443	chr14	+	430	4	ISM	ENSMUSG00000022110.14	ENSMUST00000022706.7	1545	12	15888	14047	15888	-14047	internal_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGCTTTATAATCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	73806093	73819176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_73806174_73806301_73806465_73816795_73816925_73819118
ONT_simulated_read_11405494	chr11	-	836	4	ISM	ENSMUSG00000005267.14	ENSMUST00000128370.2	2062	5	-182	3271	-182	-3271	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGAAGAGCCGTGGATG	NA	NA	NA	NA	NA	NA	NA	NA	62619679	62615676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_62615710_62616073_62616201_62618375_62618480_62619107
ONT_simulated_read_11407452	chr7	-	1653	6	ISM	ENSMUSG00000035401.10	ENST00000524767.5	4087	21	54048	-32	54048	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAGAAAGAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	98250011	98239806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98248958_98249001_98249878
ONT_simulated_read_11407745	chr14	+	303	1	ISM	ENSMUSG00000021895.11	ENST00000497267.5	2167	10	149	40519	149	-40519	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTGCTACAATTGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	27083345	27083648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_27083300_27083600
ONT_simulated_read_11409304	chr1	-	1160	3	ISM	ENSMUSG00000043467.20	ENSMUST00000159250.9	2473	5	2122	1010	1533	-846	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACCGCCACATGCGCCT	NA	NA	NA	NA	NA	NA	NA	NA	160860296	160847838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_160847977_160857211_160857312_160859374
ONT_simulated_read_11409529	chr11	+	400	5	ISM	ENSMUSG00000007653.13	ENST00000517547.5	1348	7	54	33243	0	-33061	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGGAACATTGGCTACT	NA	NA	NA	NA	NA	NA	NA	NA	42312176	42484657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_42312254_42313407_42313476_42420238_42420322_42482684_42482823_42484623
ONT_simulated_read_11413508	chr5	-	1767	4	ISM	ENSMUSG00000029126.8	ENSMUST00000031009.8	2581	5	876	297	0	-297	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGACAACATCATGTATTG	NA	NA	NA	NA	NA	NA	NA	NA	38316375	38294832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_38296217_38302052_38302164_38312951_38313069_38316220
ONT_simulated_read_11414070	chr19	-	1104	9	ISM	ENSMUSG00000024826.16	ENSMUST00000118623.2	2406	12	7245	976	7245	-976	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGGGTCCAACTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	5955575	5948390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5953758_5953801_5954267_5954347_5954481_5954575_5955416
ONT_simulated_read_11417676	chr7	+	699	1	FSM	ENSMUSG00000109936.2	ENSMUST00000209535.2	1057	1	250	108	0	-108	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTCATTGATGCTAAAGAC	NA	NA	NA	NA	NA	NA	NA	NA	141837196	141837895	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_141837200_141837900
ONT_simulated_read_11419329	chr7	+	532	2	ISM	ENSMUSG00000030609.19	ENSMUST00000107423.2	2230	4	0	5810	0	-5810	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAAAAAGTCTGTCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	78545756	78552316	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_78545950_78551977
ONT_simulated_read_11420085	chr4	+	880	4	ISM	ENSMUSG00000028708.17	ENSMUST00000106513.10	2552	14	35538	674	35538	-674	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACCTCCTTCTGGCGATC	NA	NA	NA	NA	NA	NA	NA	NA	115731967	115735773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_115732012_115732577_115732743_115733777_115733822_115735146
ONT_simulated_read_11421499	chr8	-	1433	11	ISM	ENSMUSG00000019470.13	ENSMUST00000019614.13	2677	19	5180	914	5180	-914	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACATGGAAGGACTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	3666136	3661000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993
ONT_simulated_read_11422218	chr10	-	623	4	ISM	ENSMUSG00000019822.13	ENSMUST00000019965.13	1602	10	2031	180	2031	-180	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCTTCCACAAGCAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	41364305	41363347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172
ONT_simulated_read_11424138	chr10	-	1927	18	ISM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	8973	1245	8973	-1245	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCGTTCCCGGACTCTC	NA	NA	NA	NA	NA	NA	NA	NA	77836668	77824025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509
ONT_simulated_read_11424796	chr7	+	787	5	ISM	ENSMUSG00000025470.12	ENSMUST00000168194.3	1076	6	377	125	377	-125	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAGATTCCAGAAATAACC	NA	NA	NA	NA	NA	NA	NA	NA	139616701	139620390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_139616807_139617132_139617335_139617428_139617554_139619238_139619359_139620155
ONT_simulated_read_11425613	chr11	-	153	1	ISM	ENSMUSG00000020868.16	ENSMUST00000116349.9	3442	11	12634	878	12634	-878	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTCTGTGGCAGGATTGT	NA	NA	NA	NA	NA	NA	NA	NA	94555707	94555554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_94555600_94555700
ONT_simulated_read_11426727	chr5	-	655	7	ISM	ENSMUSG00000041740.17	ENST00000413266.6	2636	17	23725	760	23725	-760	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTCCTCCCGCCCCTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	115386747	115380597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227_115385346_115386640
ONT_simulated_read_11432399	chr6	-	1355	5	ISM	ENSMUSG00000029994.18	ENSMUST00000113675.8	2030	12	16930	1	16930	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	833	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTATTCTTTCTCTGAT	NA	NA	NA	NA	NA	NA	NA	NA	86725962	86713822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_86714806_86718817_86718941_86720099_86720159_86721606_86721703_86725868
ONT_simulated_read_11437005	chr1	-	172	1	ISM	ENSMUSG00000009633.4	ENSMUST00000009777.4	871	2	421	464	421	-464	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCGCCAGCCGTCTGCG	NA	NA	NA	NA	NA	NA	NA	NA	192955104	192954932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_192954900_192955100
ONT_simulated_read_114396	chr2	-	725	1	ISM	ENSMUSG00000074649.7	ENSMUST00000124586.2	1615	2	362	610	362	-610	mono-exon	FALSE	NA	NA	NA	NA	NA	245	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGATTTAAAAAACATTGTA	NA	NA	NA	NA	NA	NA	NA	NA	155660984	155660259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155660300_155661000
ONT_simulated_read_11441068	chr8	+	491	5	ISM	ENSMUSG00000011832.17	ENSMUST00000239400.2	1542	11	24725	0	24553	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCTCCGGATGTAGT	NA	NA	NA	NA	NA	NA	NA	NA	4241291	4243701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_4241381_4241584_4241675_4243119_4243218_4243305_4243367_4243548
ONT_simulated_read_114468	chr2	-	1166	9	ISM	ENSMUSG00000037197.12	ENSMUST00000040314.12	1599	12	6467	0	6467	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTCTCTGGTTGTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	11601606	11590247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_11590540_11590644_11590718_11591677_11591777_11592531_11592606_11593738_11593903_11595499_11595642_11598218_11598276_11600141_11600240_11601439
ONT_simulated_read_1144916	chr7	+	785	5	ISM	ENSMUSG00000025509.16	ENSMUST00000064151.13	1799	8	22	1634	22	-1634	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATGGACTTCGATTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	141035141	141038373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_141035387_141037185_141037419_141037504_141037571_141037917_141038128_141038342
ONT_simulated_read_1145098	chr1	+	797	1	ISM	ENSMUSG00000026127.14	ENSMUST00000027303.14	5836	9	8396	313	8396	-313	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTTTATTTTGTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	34487327	34488124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_34487300_34488100
ONT_simulated_read_1145136	chr6	+	295	3	ISM	ENSMUSG00000038115.17	ENST00000682330.1	3232	24	104970	172677	104970	-172677	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACGGGCCAGTCATCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	125792496	125844065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_125792563_125840385_125840521_125843971
ONT_simulated_read_11451898	chr13	-	1195	11	ISM	ENSMUSG00000039233.13	ENST00000646624.1	1599	15	9520	2974	-5006	-2974	internal_fragment	FALSE	canonical	NA	NA	NA	NA	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGGCTGGCTTGATAGA	NA	NA	NA	NA	NA	NA	NA	NA	14194473	14175645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_14175764_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286
ONT_simulated_read_11455646	chr10	+	307	4	ISM	ENSMUSG00000019977.17	ENST00000415177.6	2558	17	44	31910	20	-110	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATATCTCGGTCATCCCA	NA	NA	NA	NA	NA	NA	NA	NA	21171956	21212873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_21172076_21175076_21175143_21180428_21180543_21212865
ONT_simulated_read_11457935	chr11	-	604	2	ISM	ENSMUSG00000046909.10	ENSMUST00000050207.10	1309	4	4128	128	4128	-128	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCAATGGTTCCCATCT	NA	NA	NA	NA	NA	NA	NA	NA	80028873	80027631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_80028106_80028743
ONT_simulated_read_11458808	chr14	-	901	10	ISM	ENSMUSG00000021884.19	ENST00000628377.2	1677	15	5129	6350	5093	-6350	internal_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCCCCGAGACTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	31357742	31338407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31356155_31356237_31357700
ONT_simulated_read_11458815	chr6	+	1311	8	ISM	ENSMUSG00000029769.17	ENSMUST00000154619.5	3356	15	7236	9687	7236	-9687	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGCGGAAGAGGCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	29410103	29417169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_29410242_29411246_29411385_29411708_29411868_29412362_29412534_29412900_29413087_29414784_29414980_29415429_29415655_29417070
ONT_simulated_read_11459993	chr4	-	1734	1	ISM	ENSMUSG00000052914.5	ENSMUST00000030303.6	3605	9	35472	318	35472	-318	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGGAGGACTTGTGCTTA	NA	NA	NA	NA	NA	NA	NA	NA	96406426	96404692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_96404700_96406400
ONT_simulated_read_11460841	chr7	-	394	4	ISM	ENSMUSG00000030849.19	ENST00000346997.6	2463	17	20624	37152	20624	-37152	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGGATGTGGAGTTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	129842966	129802840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_129802904_129820727_129820852_129830352_129830523_129842929
ONT_simulated_read_11462614	chr11	+	367	6	ISM	ENSMUSG00000017428.17	ENSMUST00000173938.8	1626	13	33988	429	33986	-429	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTTTCGATGAACCCCC	NA	NA	NA	NA	NA	NA	NA	NA	80353436	80362306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277
ONT_simulated_read_11464624	chr5	+	648	1	FSM	ENSMUSG00000067161.7	ENSMUST00000086918.6	892	1	0	244	0	-244	mono-exon	FALSE	NA	NA	NA	NA	NA	315	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACAGTCTGTCACTGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	97412686	97413334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_97412700_97413300
ONT_simulated_read_11465272	chr16	-	1241	10	ISM	ENSMUSG00000035629.20	ENSMUST00000040986.15	5257	19	32336	2231	32324	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCCTTTGTGTAAGGGT	NA	NA	NA	NA	NA	NA	NA	NA	32656385	32644328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_32644517_32644748_32644843_32645933_32646088_32646504_32646567_32647054_32647294_32647657_32647723_32648228_32648375_32649038_32649172_32649634_32649693_32656283
ONT_simulated_read_11466924	chr2	-	909	8	ISM	ENSMUSG00000040272.15	ENSMUST00000068513.11	1872	15	8309	220	8309	-220	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTCAGTGGGACTCACGA	NA	NA	NA	NA	NA	NA	NA	NA	93671715	93666002	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_93666174_93666274_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653
ONT_simulated_read_1146759	chr8	-	133	1	ISM	ENSMUSG00000095845.4	ENSMUST00000177563.2	328	2	282	0	282	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTACTCTGGATACCAC	NA	NA	NA	NA	NA	NA	NA	NA	85794329	85794196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85794200_85794300
ONT_simulated_read_11468107	chr7	-	247	2	ISM	ENSMUSG00000040907.16	ENST00000602133.5	3482	23	5027	20757	5027	-20757	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCCTTCAAGAACATGGT	NA	NA	NA	NA	NA	NA	NA	NA	24700161	24698351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_24698439_24700001
ONT_simulated_read_11469062	chr15	-	237	1	Genic_Genomic	ENSMUSG00000003355.8	novel	NA	NA	NA	NA	3596	4	mono-exon	FALSE	NA	NA	NA	NA	NA	223	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTATTTTTCACTCGGT	NA	NA	NA	NA	NA	NA	NA	NA	98622483	98622246	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr15_-_98622200_98622500
ONT_simulated_read_11470720	chrX	+	406	4	ISM	ENSMUSG00000019087.14	ENSMUST00000019231.12	2189	10	5456	844	5390	-812	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGCTCACCACCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	73346158	73347483	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_73346207_73346827_73346876_73346963_73347193_73347402
ONT_simulated_read_11474120	chr5	-	1746	1	ISM	ENSMUSG00000054814.15	ENSMUST00000119154.8	4738	8	66285	1937	66285	-1664	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTCATTCTTCACTGGA	NA	NA	NA	NA	NA	NA	NA	NA	74162796	74161050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_74161000_74162800
ONT_simulated_read_11476249	chr15	+	214	3	ISM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	3558	18638	3558	-18638	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTGGATGTTTTGATCG	NA	NA	NA	NA	NA	NA	NA	NA	84079999	84082830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_84080056_84081205_84081308_84082774
ONT_simulated_read_114763	chr7	-	1612	1	ISM	ENSMUSG00000030788.17	ENSMUST00000177236.8	4032	6	28692	623	21764	-623	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGACTCCAGATGTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	110414972	110413360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_110413400_110415000
ONT_simulated_read_11476475	chr7	-	2322	5	ISM	ENSMUSG00000030678.8	ENSMUST00000205568.2	2650	6	401	0	327	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGAGTTCCTAAGTTAT	NA	NA	NA	NA	NA	NA	NA	NA	126625297	126621301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126622341_126622653_126622879_126623615_126623788_126624047_126624112_126624475
ONT_simulated_read_11476904	chr6	+	1046	3	ISM	ENSMUSG00000046679.17	ENSMUST00000113700.8	2523	10	5121	23030	5086	-23030	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTCAGCTTGTGAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	86420794	86424340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_86420958_86422415_86423251_86424292
ONT_simulated_read_11478045	chr8	-	407	3	ISM	ENSMUSG00000014444.18	ENSMUST00000156333.9	8219	51	65376	3645	-2277	-3422	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGGGAAAGCTGGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	123212692	123212081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123212211_123212328_123212477_123212562
ONT_simulated_read_11478700	chr5	-	1165	1	ISM	ENSMUSG00000029598.13	ENSMUST00000031597.7	4208	12	17802	1377	17802	-1377	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATCTCTCTGTCCATTTA	NA	NA	NA	NA	NA	NA	NA	NA	120623888	120622723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_120622700_120623900
ONT_simulated_read_11483086	chr14	-	176	1	ISM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	4738	5374	4738	-5374	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTTTCCATCCGTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	52537847	52537671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52537700_52537800
ONT_simulated_read_11485955	chr7	-	1013	4	ISM	ENSMUSG00000035401.10	ENSMUST00000205276.2	7693	20	54003	7665	52076	-4170	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGAGCCAGATGGCACTC	NA	NA	NA	NA	NA	NA	NA	NA	98251983	98244008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_98244520_98246239_98246392_98249878_98250035_98251789
ONT_simulated_read_11490205	chr18	+	1975	15	ISM	ENSMUSG00000024498.17	ENST00000679501.2	4232	23	12480	7639	12480	-7613	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACAAAGTAGAAAGTGACC	NA	NA	NA	NA	NA	NA	NA	NA	42657054	42701006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_42657418_42663712_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42684174_42684226_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935
ONT_simulated_read_11493471	chr7	-	2096	3	ISM	ENSMUSG00000070348.6	ENSMUST00000093962.5	3740	5	2437	1033	2344	-1033	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGGAGAGCGGGAGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	144491169	144484700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_144486509_144487752_144487902_144491030
ONT_simulated_read_11494571	chr4	+	265	1	ISM	ENSMUSG00000028703.15	ENSMUST00000030471.9	3065	10	0	21510	0	-21510	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCCCGCCCTGTTCGAGC	NA	NA	NA	NA	NA	NA	NA	NA	115932465	115932730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_115932500_115932700
ONT_simulated_read_11495908	chr5	-	1374	6	ISM	ENSMUSG00000029475.18	ENSMUST00000031435.14	3532	12	18122	8632	18122	-7595	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAGGATGCCCAGATGAG	NA	NA	NA	NA	NA	NA	NA	NA	123020296	123017362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026
ONT_simulated_read_11496166	chr5	-	536	4	ISM	ENSMUSG00000029201.15	ENSMUST00000031103.14	2550	12	8364	10075	8364	-10075	internal_fragment	FALSE	canonical	NA	NA	NA	NA	193	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTCCTGATTGGAGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	65584928	65580638	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_65580702_65580792_65580994_65581384_65581487_65584758
ONT_simulated_read_11500823	chr14	-	1198	7	ISM	ENSMUSG00000006288.9	ENSMUST00000006451.8	1842	10	8089	235	8065	-235	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	164	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAGTCCACGAGATCCCT	NA	NA	NA	NA	NA	NA	NA	NA	51014887	51003106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_51003480_51004599_51004745_51009572_51009788_51009930_51010078_51010733_51010791_51012747_51012840_51014718
ONT_simulated_read_11501038	chrM	-	395	1	Antisense	novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064342.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAGATAAATCATATTATG	NA	NA	NA	NA	NA	NA	NA	NA	3710	3315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chrM_-_3300_3700
ONT_simulated_read_11501756	chr4	-	1768	1	ISM	ENSMUSG00000028223.9	ENSMUST00000029877.9	2959	10	26431	69	26431	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	209	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCATCCCCATCTGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	15919076	15917308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_15917300_15919100
ONT_simulated_read_11501972	chr1	-	1653	13	ISM	ENSMUSG00000056220.15	ENSMUST00000111926.9	2835	17	303	21706	303	-21706	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGAGAGGTGTGGATCT	NA	NA	NA	NA	NA	NA	NA	NA	149797887	149727092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_149727203_149733195_149733436_149736805_149736878_149740661_149740755_149740866_149741005_149747151_149747267_149748288_149748512_149755740_149755878_149761897_149762040_149763357_149763396_149776850_149776965_149778044_149778194_149797805
ONT_simulated_read_11502657	chr16	-	223	1	ISM	ENSMUSG00000044763.9	ENSMUST00000059052.9	3002	2	2543	2445	2543	-2445	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTTTCAGAGGTCTCA	NA	NA	NA	NA	NA	NA	NA	NA	55855639	55855416	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_55855400_55855600
ONT_simulated_read_11504465	chr3	-	722	4	ISM	ENSMUSG00000033439.13	ENST00000370141.7	1463	11	8893	137	8893	-137	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	183	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACTGCCGTACCAGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	116379472	116375111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403
ONT_simulated_read_11506356	chr14	-	1568	1	ISM	ENSMUSG00000022008.5	ENSMUST00000022585.5	5389	8	20014	2943	20014	-2943	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATAGTGCCACTCTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	76328186	76326618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_76326600_76328200
ONT_simulated_read_11508226	chr10	+	1978	9	ISM	ENSMUSG00000019889.11	ENST00000368215.7	4547	29	374327	-492	374327	492	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTTTTGTATGTTTAGT	NA	NA	NA	NA	NA	NA	NA	NA	28456454	28472668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_28456544_28461555_28461692_28461918_28462069_28462903_28463078_28464923_28465056_28465254_28465381_28467880_28468045_28468765_28468902_28471797
ONT_simulated_read_11509021	chr10	-	470	1	NIC	ENSMUSG00000090841.3	novel	665	6	NA	NA	1687	-694	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCAACCTGTGCTCTAG	NA	NA	NA	NA	NA	NA	NA	NA	128328006	128327536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_128327500_128328000
ONT_simulated_read_1151009	chr16	+	1697	9	ISM	ENSMUSG00000022884.17	ENSMUST00000168891.8	2203	10	1103	170	823	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	NA	NA	NA	NA	NA	NA	NA	NA	22927331	22932697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ONT_simulated_read_11513415	chrX	+	1222	11	ISM	ENSMUSG00000000838.18	ENST00000218200.12	4312	16	19098	2424	18896	-133	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAATGAAAAGACTGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	67741318	67759134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755836_67756020_67756846_67756930_67759119
ONT_simulated_read_11516561	chr3	-	1021	4	ISM	ENSMUSG00000027860.16	ENST00000355485.7	2528	8	-81	9799	-81	-8701	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGCAGCCAAGCACATGGC	NA	NA	NA	NA	NA	NA	NA	NA	102104293	102074199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_102074288_102091266_102091875_102096724_102096864_102104107
ONT_simulated_read_11521755	chr12	+	1502	1	FSM	ENSMUSG00000112829.2	ENSMUST00000219209.2	872	1	0	-630	0	630	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTATCTGCTGTGTCACAG	NA	NA	NA	NA	NA	NA	NA	NA	4287711	4289213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_4287700_4289200
ONT_simulated_read_11523345	chr17	-	155	2	ISM	ENSMUSG00000052142.16	ENST00000343625.12	2805	15	7401	3151	7401	-3151	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCCACTGAGGACTGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	32614926	32614169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32614194_32614795
ONT_simulated_read_11524117	chr15	-	1694	7	ISM	ENSMUSG00000036046.15	ENSMUST00000165743.2	5032	10	32265	2683	32265	-2683	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCCTTTGCCCCGTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	84839907	84832603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_84833480_84833751_84833911_84834812_84834976_84837330_84837523_84838102_84838244_84839590_84839693_84839846
ONT_simulated_read_11524492	chr18	+	1449	13	ISM	ENSMUSG00000024271.9	ENST00000351393.10	1716	15	3295	-2	3295	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	295	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGTTTCTCAACCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	24748260	24765941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815
ONT_simulated_read_11528316	chr11	-	134	2	ISM	ENSMUSG00000042208.16	ENSMUST00000093267.11	3646	19	52242	1536	52242	-1536	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAATGCCCACTTCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	23526785	23525438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_23525518_23526730
ONT_simulated_read_11528602	chr7	-	287	1	NIC	ENSMUSG00000025789.10	novel	5368	6	NA	NA	70054	1	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGACAGCCCATGGGACT	NA	NA	NA	NA	NA	NA	NA	NA	73593213	73592926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_73592900_73593200
ONT_simulated_read_11528713	chr2	+	314	4	ISM	ENSMUSG00000027257.14	ENSMUST00000028694.12	1862	11	0	4230	0	-4019	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTGTGGGGACCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	91087157	91090793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_91087272_91090208_91090273_91090515_91090607_91090748
ONT_simulated_read_11531913	chr17	+	1306	8	ISM	ENSMUSG00000067629.14	ENST00000628646.2	4082	19	-10	10370	-2	-10370	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGCTGGAGCCTGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	27160415	27176490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_27160493_27163606_27163729_27165606_27165713_27171535_27171628_27172003_27172126_27173901_27174056_27174246_27174346_27175956
ONT_simulated_read_11532197	chr4	-	335	1	ISM	ENSMUSG00000028218.20	ENSMUST00000108285.9	1639	9	18062	210	17261	104	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATAAATTCATGTGTGACT	NA	NA	NA	NA	NA	NA	NA	NA	12153953	12153618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_12153600_12154000
ONT_simulated_read_1153457	chr12	-	166	2	ISM	ENSMUSG00000021179.9	ENST00000354366.8	3454	13	25063	41	25063	-41	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGGAGCTGGAGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	100092532	100091897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_100091991_100092459
ONT_simulated_read_11534934	chr12	-	493	4	ISM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	157	1507	157	-930	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCCGAGTCCATTGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	85421464	85391068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_85391126_85397576_85397651_85401568_85401681_85421214
ONT_simulated_read_1153618	chr9	+	397	3	ISM	ENSMUSG00000032121.10	ENSMUST00000034632.10	2619	4	0	5396	0	-3297	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGCTATTTGGTTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	37119518	37130600	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_37119702_37129561_37129673_37130497
ONT_simulated_read_11536622	chr13	-	466	5	ISM	ENSMUSG00000021311.10	ENST00000681102.1	3496	30	37085	17293	37085	-17293	internal_fragment	FALSE	canonical	NA	NA	NA	NA	3254	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGTGATAAGATACTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	12231773	12220217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_12220244_12227273_12227375_12227556_12227665_12230298_12230452_12231695
ONT_simulated_read_11537995	chr4	-	578	4	ISM	ENSMUSG00000073771.12	ENSMUST00000183310.2	1620	8	4167	405	4167	-405	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGGAAGAGTAGGGATT	NA	NA	NA	NA	NA	NA	NA	NA	116978648	116977776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_116978059_116978167_116978294_116978394_116978527_116978610
ONT_simulated_read_11540788	chr3	-	1696	1	ISM	ENSMUSG00000027599.10	ENSMUST00000029125.10	3673	7	28867	1101	23495	-357	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTCAAGTGCTATGTACA	NA	NA	NA	NA	NA	NA	NA	NA	19188362	19186666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_19186700_19188400
ONT_simulated_read_1154397	chr2	-	1301	9	ISM	ENSMUSG00000026933.18	ENSMUST00000183461.8	5090	17	17457	10265	17173	-10265	internal_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGACAGGCAGACACTTTG	NA	NA	NA	NA	NA	NA	NA	NA	25855837	25830002	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25830326_25830876_25830962_25831389_25831482_25834437_25834616_25834953_25835051_25835145_25835286_25842689_25842832_25846258_25846340_25855674
ONT_simulated_read_11544124	chr11	+	273	2	ISM	ENSMUSG00000018347.17	ENSMUST00000071465.9	2270	7	69	14619	0	-14210	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGGGGCCCCAGGAGACCC	NA	NA	NA	NA	NA	NA	NA	NA	65698069	65705445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_65698088_65705190
ONT_simulated_read_11545204	chr2	-	1837	1	ISM	ENSMUSG00000042272.18	ENSMUST00000102660.8	8990	18	78521	5071	78521	586	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCCAGAAGTCTTTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	77017591	77015754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_77015800_77017600
ONT_simulated_read_11545910	chr2	-	501	1	NIC	ENSMUSG00000078867.10	novel	1077	4	NA	NA	5506	-608	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTACCACATCTCTGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	177080986	177080485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_177080500_177081000
ONT_simulated_read_1154691	chr7	+	1372	12	ISM	ENSMUSG00000051768.10	ENST00000543982.5	1810	16	18267	1079	18267	-1079	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGAGGAGGCTCATCCGC	NA	NA	NA	NA	NA	NA	NA	NA	24264993	24271684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_24265120_24265643_24265719_24265813_24265926_24266282_24266393_24266463_24266570_24266738_24266998_24267234_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633
ONT_simulated_read_11547185	chr3	-	647	1	NIC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	16165	0	mono-exon	FALSE	NA	NA	NA	NA	NA	554	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	153628640	153627993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_153628000_153628600
ONT_simulated_read_11547711	chr18	-	731	1	ISM	ENSMUSG00000056162.15	ENSMUST00000070139.9	2829	12	38412	444	26284	-432	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATTCTTCCACCCCAT	NA	NA	NA	NA	NA	NA	NA	NA	84629808	84629077	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_84629100_84629800
ONT_simulated_read_11547873	chr10	-	2043	1	NIC	ENSMUSG00000055531.13	novel	6526	10	NA	NA	27459	1612	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTATGTCACACTTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	117185374	117183331	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_117183300_117185400
ONT_simulated_read_1154812	chr14	+	204	1	ISM	ENSMUSG00000019297.10	ENSMUST00000019441.9	3694	10	8840	764	8840	-764	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAAATCACAGCTCATGG	NA	NA	NA	NA	NA	NA	NA	NA	55991989	55992193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_55992000_55992200
ONT_simulated_read_11548189	chr5	+	573	2	ISM	ENSMUSG00000037017.16	ENSMUST00000110960.9	2204	4	0	8786	0	-8734	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCAGCTTCGGGTGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	138115198	138123741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_138115270_138123239
ONT_simulated_read_11552132	chr11	-	265	1	ISM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	21764	690	21764	-690	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCATCTCACTCAGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	107058443	107058178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_107058200_107058400
ONT_simulated_read_1155258	chr8	+	1455	10	ISM	ENSMUSG00000031565.19	ENST00000341462.9	2966	17	39240	1258	25793	-1258	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCGCAGACTTTGGCTTA	NA	NA	NA	NA	NA	NA	NA	NA	26048089	26062411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056924_26058203_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353
ONT_simulated_read_1155640	chr3	-	458	4	ISM	ENSMUSG00000015748.14	ENST00000519029.1	1945	14	7345	4848	7345	-4848	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCAGAGCTCAGATGGCAA	NA	NA	NA	NA	NA	NA	NA	NA	95751661	95742985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95743056_95743725_95743870_95747981_95748062_95751497
ONT_simulated_read_11556724	chr1	+	1513	7	ISM	ENSMUSG00000039354.17	ENSMUST00000047615.15	3059	17	0	35700	0	-35700	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCGTCCAAGCCATCTGC	NA	NA	NA	NA	NA	NA	NA	NA	72622409	72636593	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_72622598_72624796_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537
ONT_simulated_read_11556914	chr2	+	3874	7	ISM	ENSMUSG00000042548.15	ENST00000613218.4	6938	12	46985	2114	46985	-2114	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCACACTGCATCACTGT	NA	NA	NA	NA	NA	NA	NA	NA	153234779	153243812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_153234855_153235268_153235422_153235543_153235708_153235801_153235899_153238651_153238758_153239295_153239921_153241158
ONT_simulated_read_11560213	chr8	-	1145	1	ISM	ENSMUSG00000000743.10	ENSMUST00000000759.9	2140	7	7029	323	4505	-323	mono-exon	FALSE	NA	NA	NA	NA	NA	679	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGTTTCTTCTGTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	123932470	123931325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123931300_123932500
ONT_simulated_read_11564627	chr4	-	552	1	ISM	ENSMUSG00000028607.17	ENSMUST00000030345.15	2372	5	15553	3525	15443	-3310	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTTTAACCTCATTGTA	NA	NA	NA	NA	NA	NA	NA	NA	107765254	107764702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_107764700_107765300
ONT_simulated_read_11567086	chr8	-	1019	1	FSM	ENSMUSG00000045538.7	ENSMUST00000058579.7	2262	1	0	1243	0	-1243	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGGCTCCTGAGAGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	106738514	106737495	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_106737500_106738500
ONT_simulated_read_11568819	chr16	-	1157	5	ISM	ENSMUSG00000022498.17	ENSMUST00000038424.14	3095	12	46091	692	46052	-692	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTCCCGAATCTGCTGCG	NA	NA	NA	NA	NA	NA	NA	NA	10906423	10893466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_10893507_10897567_10897649_10902071_10902182_10902614_10902758_10905640
ONT_simulated_read_11569252	chr4	-	1194	1	ISM	ENSMUSG00000028879.5	ENSMUST00000030698.5	2934	9	28983	832	28983	-832	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGCCTAGAACAGTCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	132582837	132581643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_132581600_132582800
ONT_simulated_read_11569586	chr4	-	762	1	ISM	ENSMUSG00000028636.15	ENSMUST00000106316.2	954	3	3085	0	3085	0	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCGGGTTTCTGGTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	119276488	119275726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_119275700_119276500
ONT_simulated_read_11570529	chr7	-	1051	1	ISM	ENSMUSG00000062028.9	ENSMUST00000080594.8	1737	2	2090	472	2090	-472	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACGAGGTCTCACCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	24132869	24131818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_24131800_24132900
ONT_simulated_read_11572479	chr11	+	422	2	FSM	ENSMUSG00000018923.14	ENST00000674339.1	457	2	-47	82	13	-82	multi-exon	FALSE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTTCCAGCAAGACGGC	NA	NA	NA	NA	NA	NA	NA	NA	70342757	70344217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_70342890_70343927
ONT_simulated_read_1157286	chr3	-	1689	12	ISM	ENSMUSG00000028099.9	ENSMUST00000154679.8	2406	15	3741	-33	2280	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGGTCAGCACGATAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	96631016	96618805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829
ONT_simulated_read_11577138	chr9	-	1025	6	ISM	ENSMUSG00000053110.14	ENST00000526343.5	1574	7	2613	343	2613	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	939	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGCAGGGAGCCACTCTG	NA	NA	NA	NA	NA	NA	NA	NA	8001704	7934497	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_7934734_7936515_7936629_7938408_7938540_7952953_7953136_7973796_7973913_8001457
ONT_simulated_read_1157764	chr9	-	2427	1	ISM	ENSMUSG00000066829.8	ENSMUST00000086278.7	3238	8	28371	93	28371	-93	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCACGTTAATTTCCAGAT	NA	NA	NA	NA	NA	NA	NA	NA	22190563	22188136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_22188100_22190600
ONT_simulated_read_11582086	chr19	+	295	3	ISM	ENSMUSG00000024835.16	ENSMUST00000008893.9	1888	11	48	4151	48	-4151	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGACAGTGTGTGGGCAC	NA	NA	NA	NA	NA	NA	NA	NA	4198665	4199883	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4198736_4199340_4199544_4199861
ONT_simulated_read_11583259	chrX	+	713	5	ISM	ENSMUSG00000031253.16	ENSMUST00000033606.15	2290	12	22	8151	0	-8151	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGGATGGAGAAGCCACAT	NA	NA	NA	NA	NA	NA	NA	NA	132809196	132824412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_132809528_132809701_132809754_132811265_132811481_132816056_132816144_132824384
ONT_simulated_read_11584727	chrX	-	1718	1	NIC	ENSMUSG00000087174.8	novel	1887	8	NA	NA	27220	-244	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTGATGACCAACTAGACC	NA	NA	NA	NA	NA	NA	NA	NA	104086421	104084703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_104084700_104086400
ONT_simulated_read_11585003	chr4	+	847	1	FSM	ENSMUSG00000064949.3	ENSMUST00000083015.3	130	1	-422	-295	-422	295	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTGAACATTGCATGAGT	NA	NA	NA	NA	NA	NA	NA	NA	132037128	132037975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_132037100_132038000
ONT_simulated_read_11585539	chr4	+	635	1	FSM	ENSMUSG00000095588.2	ENSMUST00000121208.3	462	1	0	-173	0	173	mono-exon	FALSE	NA	NA	NA	NA	NA	4877	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATTGTGAGTTAAAAAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	34485831	34486466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_34485800_34486500
ONT_simulated_read_11585828	chr16	-	621	6	ISM	ENSMUSG00000022844.9	ENSMUST00000023550.9	1809	17	79876	175	79876	-175	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACTAGAGAAAAGGAGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	35231367	35217856	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296
ONT_simulated_read_11589638	chr15	-	629	1	ISM	ENSMUSG00000018040.10	ENSMUST00000018184.10	4363	7	7290	1450	7290	-1450	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCACTGATCATCGGAGT	NA	NA	NA	NA	NA	NA	NA	NA	82999712	82999083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_82999100_82999700
ONT_simulated_read_1158964	chr3	-	1084	1	ISM	ENSMUSG00000089911.5	ENSMUST00000029570.9	2782	12	30225	205	30225	-205	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCCAGTTATATTATTT	NA	NA	NA	NA	NA	NA	NA	NA	116426101	116425017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_116425000_116426100
ONT_simulated_read_11589914	chr7	+	790	5	ISM	ENSMUSG00000066406.17	ENST00000394510.6	4800	29	75	65814	75	-65814	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATGAGCTCTGCAAACT	NA	NA	NA	NA	NA	NA	NA	NA	75293066	75334921	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_75293213_75313159_75313236_75316259_75316397_75326853_75327228_75334864
ONT_simulated_read_11592553	chr4	+	560	3	ISM	ENSMUSG00000023571.5	ENSMUST00000024338.5	1315	8	0	1839	0	-1839	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCAGGACCTCCTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	156046774	156049247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_156047195_156048999_156049117_156049224
ONT_simulated_read_11592784	chr5	+	1090	8	FSM	ENSMUSG00000023353.15	ENST00000479901.5	1883	8	0	793	0	-793	multi-exon	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGCCCTGGGACTGCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	24657204	24687387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_24657533_24681375_24681435_24681630_24681719_24681901_24681988_24682066_24682209_24682736_24682872_24683007_24683136_24687263
ONT_simulated_read_11593053	chr2	-	3098	1	ISM	ENSMUSG00000045838.9	ENSMUST00000059997.9	4703	11	4927	479	4927	-479	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGGAAACCCTCTTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	118588215	118585117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_118585100_118588200
ONT_simulated_read_11596642	chr1	-	469	2	ISM	ENSMUSG00000026425.16	ENSMUST00000186543.7	3533	22	230881	0	228538	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTGCCAGATCTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	131224204	131222955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_131223278_131224057
ONT_simulated_read_11598962	chr19	-	556	6	ISM	ENSMUSG00000063904.5	ENST00000530165.5	1985	16	10336	5038	10336	-5038	internal_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTCCAGCTACGAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	4967939	4964910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899
ONT_simulated_read_11605019	chr11	+	2685	12	ISM	ENSMUSG00000032740.18	ENST00000436346.7	9140	33	111998	2188	111631	-2182	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTGTTTTTGTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	29435978	29458623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_29436012_29439581_29439728_29443699_29443793_29443878_29444094_29447342_29447427_29448408_29448613_29449334_29449407_29450975_29451057_29453382_29453652_29453851_29454312_29457124_29457224_29457694
ONT_simulated_read_11606432	chr10	-	668	1	ISM	ENSMUSG00000020198.9	ENSMUST00000020420.9	4805	31	34324	317	34324	-317	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGCAGTGGAGAGTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	80543774	80543106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80543100_80543800
ONT_simulated_read_11607427	chr10	-	516	1	ISM	ENSMUSG00000046841.6	ENSMUST00000053871.5	3089	2	5315	1927	5289	-1596	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCAGAGCGCCTGGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	84364611	84364095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_84364100_84364600
ONT_simulated_read_11608917	chr3	-	586	7	ISM	ENSMUSG00000027882.19	ENSMUST00000102621.11	2419	19	30539	6936	30538	-6924	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGATAGTGATATGATTCG	NA	NA	NA	NA	NA	NA	NA	NA	108717288	108707427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_108707478_108708050_108708190_108709426_108709508_108710861_108710928_108712373_108712432_108712553_108712650_108717192
ONT_simulated_read_11611757	chr6	-	1033	1	ISM	ENSMUSG00000029569.10	ENSMUST00000031554.9	4587	5	24777	1604	24777	-1604	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGCTCATAATGACTGCA	NA	NA	NA	NA	NA	NA	NA	NA	13583322	13582289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_13582300_13583300
ONT_simulated_read_1161258	chr11	+	1434	12	ISM	ENSMUSG00000034714.10	ENSMUST00000045779.6	3486	14	85	10020	85	-10020	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCAGACCATCTCCAATG	NA	NA	NA	NA	NA	NA	NA	NA	114566341	114601783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_114566499_114577219_114577393_114581064_114581177_114587414_114587636_114592606_114592703_114593061_114593135_114598161_114598232_114598504_114598561_114599242_114599336_114599594_114599688_114600868_114601012_114601636
ONT_simulated_read_11614214	chr4	-	2298	1	ISM	ENSMUSG00000041459.16	ENSMUST00000165113.8	6495	7	10159	2158	8525	-2158	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATTGGACGATGCAAATT	NA	NA	NA	NA	NA	NA	NA	NA	148701294	148698996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_148699000_148701300
ONT_simulated_read_11617877	chr10	-	955	1	ISM	ENSMUSG00000020069.17	ENSMUST00000020263.14	2213	10	8194	82	8147	-82	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGTCAGTGTGATCTCA	NA	NA	NA	NA	NA	NA	NA	NA	62851479	62850524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62850500_62851500
ONT_simulated_read_11618026	chr4	-	670	5	ISM	ENSMUSG00000028896.14	ENSMUST00000084250.11	2285	10	5742	3499	5700	-3495	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGGCTTTGGTACCTCT	NA	NA	NA	NA	NA	NA	NA	NA	132067316	132062728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235
ONT_simulated_read_11619340	chr10	-	971	1	ISM	ENSMUSG00000035215.10	ENSMUST00000220225.2	1129	3	1404	14	1404	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTCCCTCCCTTCCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	80689639	80688668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80688700_80689600
ONT_simulated_read_11619972	chrX	+	1021	6	ISM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	0	34938	0	-34938	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCACAAAATCAAGAAGCTCG	NA	NA	NA	NA	NA	NA	NA	NA	150799423	150810752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689
ONT_simulated_read_11620676	chr15	-	1225	10	ISM	ENSMUSG00000036529.18	ENSMUST00000144585.9	6165	41	9232	14705	9232	-14705	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCATGAGCTACCTTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	89190226	89187190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_89187349_89187422_89187582_89187675_89187745_89188012_89188163_89188887_89189001_89189083_89189289_89189365_89189465_89189546_89189676_89189746_89189861_89190197
ONT_simulated_read_11622964	chr2	-	1657	13	ISM	ENSMUSG00000027244.15	ENST00000683050.1	2834	18	21771	499	21738	120	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGCCCCTACCTGCTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	91519126	91506406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91512370_91512482_91513147_91513247_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985
ONT_simulated_read_11626153	chr11	+	939	6	ISM	ENSMUSG00000047181.13	ENSMUST00000055947.10	3318	10	402	4658	402	-4658	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTAGCAACCGCCTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	94901106	94912255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_94901403_94905177_94905233_94910186_94910354_94910755_94911045_94912023_94912112_94912211
ONT_simulated_read_11626768	chr17	-	208	1	ISM	ENSMUSG00000024218.14	ENSMUST00000114848.8	2207	6	7466	447	5880	91	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTTTCGGTCACACCTA	NA	NA	NA	NA	NA	NA	NA	NA	28120750	28120542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_28120500_28120800
ONT_simulated_read_11627409	chr10	-	617	1	ISM	ENSMUSG00000038302.15	ENSMUST00000041024.15	2513	13	164976	388	164976	-388	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACACGTGTCTAACCAG	NA	NA	NA	NA	NA	NA	NA	NA	42189585	42188968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_42189000_42189600
ONT_simulated_read_1162825	chr7	-	177	3	ISM	ENSMUSG00000030701.18	ENST00000543085.5	470	5	2108	715	2108	-715	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGGTGCCACCCAACGCA	NA	NA	NA	NA	NA	NA	NA	NA	100303911	100294842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_100294877_100302860_100302901_100303808
ONT_simulated_read_11630043	chrX	+	485	2	ISM	ENSMUSG00000025332.15	ENST00000452825.7	5409	24	252	33972	0	-32203	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGGCCCGTGTGGCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	151016267	151023067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_151016707_151023021
ONT_simulated_read_11630743	chr11	-	965	7	ISM	ENSMUSG00000018425.19	ENST00000425628.7	2250	17	22605	0	16081	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAAGGAAGTGGTCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	86675830	86660866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704
ONT_simulated_read_11630771	chr10	-	413	1	ISM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	19675	1943	19675	-1943	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAAGGATAAGAATTCA	NA	NA	NA	NA	NA	NA	NA	NA	62418385	62417972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62418000_62418400
ONT_simulated_read_11631602	chr1	+	829	5	FSM	ENSMUSG00000026240.13	ENST00000409091.5	784	5	-16	-29	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGCAGTGAGTTCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	86510625	86533017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_86510819_86524472_86524562_86526724_86526928_86528804_86528911_86532779
ONT_simulated_read_11632315	chr10	+	2033	12	ISM	ENSMUSG00000019984.17	ENST00000354577.8	4102	29	18361	8355	18361	1949	internal_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGATCACCTAGGGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	24764348	24780340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_24764499_24767016_24767161_24768411_24768558_24769512_24769759_24771603_24771747_24773082_24773258_24774307_24774472_24776593_24776719_24777900_24778107_24778190_24778372_24779558_24779730_24780158
ONT_simulated_read_11632643	chr13	-	1104	1	ISM	ENSMUSG00000021365.16	ENSMUST00000021794.14	4871	8	175155	1454	47109	-1115	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGTTATTTCAATTCT	NA	NA	NA	NA	NA	NA	NA	NA	41465614	41464510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_41464500_41465600
ONT_simulated_read_11632961	chr14	+	292	2	ISM	ENSMUSG00000022131.4	ENSMUST00000022728.4	1875	9	0	23416	0	-23416	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCCCGGCTACAGCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	118374569	118377257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_118374753_118377148
ONT_simulated_read_11634690	chr17	-	609	1	FSM	ENSMUSG00000068120.5	ENSMUST00000181584.2	441	1	0	-168	0	168	mono-exon	FALSE	NA	NA	NA	NA	NA	988	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACCATCCTGGGCCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	5866915	5866306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_5866300_5866900
ONT_simulated_read_11638654	chr1	-	190	1	ISM	ENSMUSG00000039239.15	ENSMUST00000045288.14	5116	7	80383	2625	80094	-1199	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGTGACAATGACATATAAT	NA	NA	NA	NA	NA	NA	NA	NA	186357803	186357613	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_186357600_186357800
ONT_simulated_read_11638772	chr2	-	127	1	ISM	ENSMUSG00000027048.16	ENSMUST00000102710.10	4893	28	103348	858	90082	-59	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACCAGAAGGGGGCCTAC	NA	NA	NA	NA	NA	NA	NA	NA	69069610	69069483	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_69069500_69069600
ONT_simulated_read_11640768	chr10	-	792	3	ISM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	3067	1240	3067	-1240	internal_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATATGTTGTGGGCAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	5752533	5750399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_5750436_5751151_5751243_5751868
ONT_simulated_read_11642215	chr1	-	1549	1	ISM	ENSMUSG00000016262.15	ENSMUST00000155579.8	3350	4	8553	1167	4544	-1166	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCATCTCTGATAGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	192529511	192527962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_192528000_192529500
ONT_simulated_read_11643651	chr13	+	547	5	ISM	ENSMUSG00000055360.14	ENSMUST00000126540.8	971	6	23	1277	0	-204	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAGTGAGTGAATTATCT	NA	NA	NA	NA	NA	NA	NA	NA	13357323	13365231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_13357398_13357501_13357630_13360374_13360551_13363952_13364061_13365170
ONT_simulated_read_11643811	chr14	-	1334	1	ISM	ENSMUSG00000041471.10	ENSMUST00000111917.3	3317	11	41461	30539	0	-1451	mono-exon	FALSE	NA	NA	NA	NA	NA	335	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTTCTGTGGAGGACTG	NA	NA	NA	NA	NA	NA	NA	NA	33990862	33989528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_33989500_33990900
ONT_simulated_read_1164427	chr9	-	3578	23	NIC	ENSMUSG00000033419.17	novel	4404	29	NA	NA	45194	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAATCTTTCTGTCTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	86717273	86647975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_86649390_86651511_86651615_86655571_86655677_86656249_86656334_86657644_86657745_86659086_86659118_86663622_86663773_86665352_86665488_86672108_86672193_86673537_86673622_86674006_86674079_86674216_86674295_86674519_86674790_86675409_86675518_86680590_86680753_86680882_86680898_86686507_86686621_86688521_86688632_86691573_86691602_86697482_86697554_86703784_86703827_86707023_86707131_86717161
ONT_simulated_read_11644353	chr13	-	1733	1	ISM	ENSMUSG00000021556.13	ENSMUST00000022039.7	3954	10	38447	1006	38416	-636	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCCACAGGGTTGGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	59785178	59783445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_59783400_59785200
ONT_simulated_read_11644503	chr2	-	396	4	ISM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	10793	35009	10793	-35009	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGAAGTTTAAAAAGGATG	NA	NA	NA	NA	NA	NA	NA	NA	140001691	139996811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_139996862_139998974_139999090_140000399_140000553_140001613
ONT_simulated_read_11648946	chr4	-	1187	1	ISM	ENSMUSG00000042446.17	ENST00000314607.11	7267	30	103907	1271	103853	-1157	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGATTGCAGTAGGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	126758075	126756888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126756900_126758100
ONT_simulated_read_1164946	chr15	-	1224	7	ISM	ENSMUSG00000011960.13	ENSMUST00000012104.7	2175	9	7311	708	7311	-708	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAAGCACAATTCCATAGA	NA	NA	NA	NA	NA	NA	NA	NA	98458206	98441799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_98442490_98444404_98444476_98444625_98444790_98446546_98446593_98449794_98449858_98452481_98452543_98458077
ONT_simulated_read_11652937	chr15	-	1151	1	ISM	ENSMUSG00000005360.15	ENSMUST00000005493.14	4163	10	74425	1065	74070	-1065	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTGGAACACTAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	8665823	8664672	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_8664700_8665800
ONT_simulated_read_11654282	chr12	-	125	2	ISM	ENSMUSG00000002996.18	ENSMUST00000175686.8	1315	9	12553	1568	12553	-1568	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTGTCATTCGGTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	31987054	31984399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_31984441_31986970
ONT_simulated_read_11656354	chr3	-	716	1	ISM	ENSMUSG00000037161.15	ENSMUST00000108046.8	1409	4	7243	156	7243	-156	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTTGGATTTAAGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	51296704	51295988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_51296000_51296700
ONT_simulated_read_11658493	chr13	-	390	1	ISM	ENSMUSG00000021357.15	ENSMUST00000102946.8	4375	29	134953	1037	134953	-1037	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGTGAGACATTTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	30999328	30998938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_30998900_30999300
ONT_simulated_read_11658723	chr1	-	470	1	ISM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	28017	18994	28017	-18994	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAGCAAGATGGTAGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	189392266	189391796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_189391800_189392300
ONT_simulated_read_11660547	chr2	+	2355	14	ISM	ENSMUSG00000027363.16	ENSMUST00000028841.14	4145	19	17	8277	0	-8270	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCAGATTCGGAACCTC	NA	NA	NA	NA	NA	NA	NA	NA	126549279	126592940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899
ONT_simulated_read_11663705	chr16	-	891	1	NIC	ENSMUSG00000022639.15	novel	2052	4	NA	NA	12136	-358	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAAAGGCTCAAGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	50540910	50540019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_50540000_50540900
ONT_simulated_read_11666999	chr7	-	779	1	ISM	ENSMUSG00000025512.16	ENSMUST00000153191.8	4182	13	43689	2213	43677	-2211	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGACCTACTTATTTCT	NA	NA	NA	NA	NA	NA	NA	NA	141076040	141075261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_141075300_141076000
ONT_simulated_read_1166761	chr6	-	513	4	ISM	ENSMUSG00000030286.7	ENSMUST00000032425.7	1985	8	11696	850	11696	-850	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTGCTGTCTTAAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	113496917	113492684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113492993_113494057_113494141_113494842_113494923_113496875
ONT_simulated_read_11672188	chr17	+	1168	6	ISM	ENSMUSG00000052712.18	ENSMUST00000234256.2	1694	9	8	7205	8	-7203	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACCCTGAAGTCACAGAG	NA	NA	NA	NA	NA	NA	NA	NA	29488023	29513294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_29488478_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248
ONT_simulated_read_11673165	chr2	-	960	1	ISM	ENSMUSG00000026873.10	ENSMUST00000028232.7	3741	15	17926	1334	17926	-1334	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAGCAACAACCCTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	34786062	34785102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_34785100_34786100
ONT_simulated_read_11674211	chr3	-	856	2	ISM	ENSMUSG00000040289.9	ENST00000337919.9	2229	5	1045	914	1045	-914	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAGATTCAATTGAGGTA	NA	NA	NA	NA	NA	NA	NA	NA	8731072	8729336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_8730125_8731004
ONT_simulated_read_11675351	chr17	-	3423	8	ISM	ENSMUSG00000052105.18	ENST00000359865.7	5953	15	71851	266	71851	-266	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	177	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTCAGTCTGGTCTAC	NA	NA	NA	NA	NA	NA	NA	NA	66673537	66644256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_66645150_66647478_66647536_66649820_66651361_66653348_66653381_66655237_66655517_66661117_66661373_66665016_66665185_66673338
ONT_simulated_read_11677484	chr9	+	2821	19	ISM	ENSMUSG00000032187.17	ENST00000645460.1	5396	34	0	36152	0	-36152	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAAACCACCACTGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	21527559	21578501	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461
ONT_simulated_read_11677591	chr7	-	827	5	ISM	ENSMUSG00000003271.18	ENSMUST00000210754.2	1242	6	7142	-17	7142	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCTCTGTGCTGACT	NA	NA	NA	NA	NA	NA	NA	NA	45384765	45379406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45379624_45380661_45380843_45383042_45383138_45383410_45383538_45384558
ONT_simulated_read_11685018	chr5	-	815	1	NIC	ENSMUSG00000072694.9	novel	1333	2	NA	NA	4644	-322	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGAGACTTAGGACTTAG	NA	NA	NA	NA	NA	NA	NA	NA	114947393	114946578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_114946600_114947400
ONT_simulated_read_11685278	chr19	-	491	1	ISM	ENSMUSG00000025188.16	ENSMUST00000162004.8	2847	20	24199	184	22484	-91	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAAATTGAACTGACAACA	NA	NA	NA	NA	NA	NA	NA	NA	42744218	42743727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_42743700_42744200
ONT_simulated_read_11685715	chr18	-	939	5	ISM	ENSMUSG00000024500.21	ENSMUST00000117687.8	2271	9	197646	406	197646	53	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAATGTTCCTTTGGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	42834713	42778739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_42779073_42781738_42781831_42796174_42796345_42821366_42821532_42834534
ONT_simulated_read_11688774	chr6	+	1355	1	FSM	ENSMUSG00000107743.2	ENSMUST00000204247.2	1770	1	0	415	0	-415	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGGAAATGCCTCCATG	NA	NA	NA	NA	NA	NA	NA	NA	146277914	146279269	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_146277900_146279300
ONT_simulated_read_116896	chr3	-	1218	10	ISM	ENSMUSG00000028107.15	ENST00000438568.6	1479	12	4082	0	4082	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	702	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTCCATTGGTGATGTA	NA	NA	NA	NA	NA	NA	NA	NA	95657730	95647481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95657650
ONT_simulated_read_11691590	chr8	+	506	2	ISM	ENSMUSG00000013033.17	ENSMUST00000131717.2	5152	21	5671	8987	5671	-8963	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCTCGCCTGCAGCCACC	NA	NA	NA	NA	NA	NA	NA	NA	84656450	84657653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_84656894_84657590
ONT_simulated_read_116926	chr15	+	624	5	ISM	ENSMUSG00000016619.11	ENSMUST00000165443.4	4766	8	38	8025	0	-5069	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGCCCTCCTCCGGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	84807649	84819139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_84807852_84811568_84811648_84813572_84813657_84817735_84817920_84819064
ONT_simulated_read_11693114	chr10	+	921	6	ISM	ENSMUSG00000019823.18	ENSMUST00000019967.16	3563	24	63	7378	9	-7255	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGGCATCACAGCCAACT	NA	NA	NA	NA	NA	NA	NA	NA	41352372	41355648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614
ONT_simulated_read_11694414	chr6	-	772	5	ISM	ENSMUSG00000014554.14	ENSMUST00000014698.10	1107	7	16361	0	16330	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	NA	NA	NA	NA	NA	NA	NA	83467590	83457198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402
ONT_simulated_read_11700940	chr8	-	477	7	ISM	ENSMUSG00000031591.15	ENST00000637991.1	997	11	854	2255	854	-2255	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACCAAGACCAAGATAATGG	NA	NA	NA	NA	NA	NA	NA	NA	41807096	41796874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41804930_41805010_41807050
ONT_simulated_read_1170606	chr15	-	528	2	FSM	ENSMUSG00000048307.9	ENST00000519316.5	561	2	33	0	33	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCCTGTCAGTGTGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	36486231	36479382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_36479620_36485940
ONT_simulated_read_11706149	chr11	-	374	3	ISM	ENSMUSG00000018659.13	ENST00000434554.7	830	6	4217	-32	4215	32	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	948	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGTGGGGAAAAGCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	96830569	96829702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_96829910_96830080_96830152_96830473
ONT_simulated_read_11709907	chr10	+	1055	12	ISM	ENSMUSG00000034560.7	ENST00000620430.5	3555	33	-72	35378	0	-35378	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGCTCTTTGTACTGCA	NA	NA	NA	NA	NA	NA	NA	NA	83379804	83394725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_83379967_83382648_83382789_83385325_83385380_83385462_83385529_83386127_83386174_83386744_83386813_83390597_83390681_83391436_83391480_83391876_83391981_83392666_83392788_83394461_83394586_83394681
ONT_simulated_read_11710452	chr14	-	553	4	ISM	ENSMUSG00000071350.13	ENST00000354234.8	2709	13	6510	17288	6510	3206	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGAATCTACGAAACATGGA	NA	NA	NA	NA	NA	NA	NA	NA	59668707	59656763	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_59657011_59660836_59660934_59663910_59664004_59668591
ONT_simulated_read_11711552	chr10	+	756	6	ISM	ENSMUSG00000020246.14	ENSMUST00000020478.14	3422	15	204	30538	204	-30538	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGACTGTGAGTGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	82535044	82547724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_82535141_82536752_82536902_82538276_82538438_82544842_82545052_82545797_82545883_82547668
ONT_simulated_read_11712395	chr11	+	1402	10	ISM	ENSMUSG00000000632.14	ENST00000360295.13	4223	17	42373	1266	42161	-1258	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGCCCCTATAACCGCATC	NA	NA	NA	NA	NA	NA	NA	NA	77863998	77868608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_77864087_77864608_77864804_77865016_77865156_77865265_77865463_77865971_77866167_77867297_77867490_77867569_77867768_77868070_77868110_77868362_77868481_77868567
ONT_simulated_read_11712905	chr15	-	563	4	ISM	ENSMUSG00000005360.15	ENSMUST00000157065.2	728	5	1571	93	1571	-93	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTTTAGCAGTGTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	8738322	8715592	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_8715639_8717194_8717297_8717771_8717910_8738045
ONT_simulated_read_11714248	chr11	-	459	1	ISM	ENSMUSG00000025578.10	ENSMUST00000026663.8	3580	5	1458	2748	1458	-2748	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAGCTCAGCAGAGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	118930337	118929878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_118929900_118930300
ONT_simulated_read_11714776	chr8	+	969	5	FSM	ENSMUSG00000031497.11	ENST00000430559.5	1017	5	50	-2	0	2	multi-exon	FALSE	canonical	NA	NA	NA	NA	267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACTTGCTGGAGTGCGTG	NA	NA	NA	NA	NA	NA	NA	NA	10056653	10085441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_10057161_10057249_10057335_10081309_10081423_10081505_10081657_10085328
ONT_simulated_read_11715910	chr5	-	1657	1	Genic_Genomic	ENSMUSG00000025745.13	novel	NA	NA	NA	NA	35205	3	mono-exon	FALSE	NA	NA	NA	NA	NA	272	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCACAGCCTAGGTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	30324955	30323298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr5_-_30323300_30325000
ONT_simulated_read_11716380	chr5	-	857	1	ISM	ENSMUSG00000066278.7	ENSMUST00000040967.9	2522	4	25579	1194	25579	-1194	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGGAATGTGTGCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	124144754	124143897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_124143900_124144800
ONT_simulated_read_11716410	chr4	+	709	1	FSM	ENSMUSG00000059195.11	ENSMUST00000121430.2	1128	1	0	419	0	-419	mono-exon	FALSE	NA	NA	NA	NA	NA	243	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGTTACGAGCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	103420598	103421307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_103420600_103421300
ONT_simulated_read_117173	chrX	+	337	2	ISM	ENSMUSG00000084885.8	ENSMUST00000130625.8	876	4	1269	13230	1269	-13230	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTTGGGTAAGTGCAAC	NA	NA	NA	NA	NA	NA	NA	NA	151152837	151186464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_151153019_151186308
ONT_simulated_read_11722310	chr5	-	1081	5	ISM	ENSMUSG00000023452.20	ENSMUST00000120591.8	2491	9	6978	595	3141	-595	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	136	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGGGTGTTTTAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	32896678	32894362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480
ONT_simulated_read_1172271	chr11	-	665	4	ISM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	3901	254	3901	-254	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTGCCTGGTGGCTAGCG	NA	NA	NA	NA	NA	NA	NA	NA	117713017	117706605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922
ONT_simulated_read_11723324	chr11	-	542	6	ISM	ENSMUSG00000000751.14	ENSMUST00000092907.12	5077	17	6136	17972	6122	-15788	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATCGCCAGCCTCACCC	NA	NA	NA	NA	NA	NA	NA	NA	75233014	75206963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969
ONT_simulated_read_1172695	chr14	-	373	4	ISM	ENSMUSG00000054733.10	ENSMUST00000210428.2	1180	6	131764	688	28572	-136	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGAGAGGGACAAGTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	64522633	64360762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_64360803_64447876_64447984_64471277_64471383_64522512
ONT_simulated_read_11743174	chr3	+	808	4	ISM	ENSMUSG00000025758.11	ENSMUST00000203295.3	3363	16	12684	132	12484	-124	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGTGTAAATAATGTATT	NA	NA	NA	NA	NA	NA	NA	NA	40767172	40771186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_40767311_40767900_40768027_40769416_40769524_40770749
ONT_simulated_read_11745049	chr11	-	1385	5	ISM	ENSMUSG00000001323.18	ENSMUST00000108448.8	3239	9	14649	1153	14649	-1127	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCACTACTGCCATCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	74801950	74798771	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868
ONT_simulated_read_11745183	chr14	-	1254	1	ISM	ENSMUSG00000021830.15	ENSMUST00000139526.9	5045	21	83489	1218	83446	224	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATACTTTGAAGAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	45373393	45372139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_45372100_45373400
ONT_simulated_read_11745360	chr5	+	557	4	ISM	ENSMUSG00000028962.15	ENSMUST00000080067.13	4179	23	0	11171	0	-11168	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCAGGGCCCAGGACGGA	NA	NA	NA	NA	NA	NA	NA	NA	24630229	24634777	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_24630434_24632520_24632635_24634413_24634577_24634701
ONT_simulated_read_11746873	chr2	-	1122	10	ISM	ENSMUSG00000027639.17	ENSMUST00000109549.3	3245	14	13263	1491	2	-1491	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGTAATGGTCACGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	156963863	156946755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750
ONT_simulated_read_11747928	chr1	-	178	1	ISM	ENSMUSG00000026185.9	ENSMUST00000027377.9	6006	4	15689	1086	15689	-1086	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTATCTCCATGGTAACA	NA	NA	NA	NA	NA	NA	NA	NA	72898354	72898176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_72898200_72898400
ONT_simulated_read_11748469	chr2	+	1187	5	ISM	ENSMUSG00000026965.13	ENSMUST00000028341.11	3004	13	0	9544	0	-9544	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCAGAGGCAGCAACTTCT	NA	NA	NA	NA	NA	NA	NA	NA	25162489	25166383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_25162690_25162926_25163550_25163811_25163945_25164677_25164853_25166327
ONT_simulated_read_11748489	chr5	-	330	1	NIC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	1425	-145	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAATTTGGGGGAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	148986685	148986355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_148986400_148986700
ONT_simulated_read_11750675	chr14	-	975	1	FSM	ENSMUSG00000098751.3	ENSMUST00000184349.3	62	1	0	-913	0	913	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGACTGAGTTCTCTCGG	NA	NA	NA	NA	NA	NA	NA	NA	26390763	26389788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_26389800_26390800
ONT_simulated_read_117523	chr7	+	1969	15	ISM	ENSMUSG00000025133.10	ENSMUST00000026126.10	3240	23	0	22286	0	-11704	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCAGCAGTTCCTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	97130162	97168315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254
ONT_simulated_read_11752357	chr8	-	1455	4	ISM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	8635	790	8635	-790	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1206	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCAAGTTACCCAACTCCT	NA	NA	NA	NA	NA	NA	NA	NA	86273338	86265051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141
ONT_simulated_read_11759825	chr1	+	3200	10	ISM	ENSMUSG00000070738.11	ENSMUST00000027517.14	5695	30	81110	0	81110	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCATTCCTGTCCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	87862118	87872212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_87862224_87863059_87863174_87864005_87864141_87864470_87864623_87865875_87865988_87866067_87866161_87866917_87867038_87867898_87868029_87869090_87869222_87870104
ONT_simulated_read_11759937	chr11	-	1132	6	ISM	ENSMUSG00000017405.15	ENSMUST00000017549.13	2809	15	7604	273	7604	-273	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTGCATAGCTTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	78059897	78057204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797
ONT_simulated_read_11762022	chr11	-	252	1	ISM	ENSMUSG00000020375.10	ENSMUST00000020643.4	2688	18	41168	420	41168	-420	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGACCCAAGAGAATCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	50280784	50280532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_50280500_50280800
ONT_simulated_read_11762130	chr1	-	1169	13	ISM	ENSMUSG00000025909.17	ENST00000642826.1	1197	14	21059	-12	21047	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	460	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTGAGCTCTGCCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	8853120	8433698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_8433858_8533617_8533690_8535660_8535778_8624948_8624988_8653428_8653559_8665635_8665767_8677293_8677377_8695002_8695106_8748030_8748073_8748160_8748205_8749296_8749355_8752196_8752254_8852986
ONT_simulated_read_11762436	chr9	-	818	1	ISM	ENSMUSG00000032579.15	ENSMUST00000035196.14	2192	11	10308	141	10290	-141	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCCTGAGGGCTTAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	107205241	107204423	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_107204400_107205200
ONT_simulated_read_11764588	chr5	-	726	3	ISM	ENSMUSG00000011831.17	ENST00000540033.2	2870	19	86773	157	86773	-157	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTGAGGACTATGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	107936135	107895764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_107896324_107912541_107912638_107936064
ONT_simulated_read_11765718	chr7	-	631	3	ISM	ENSMUSG00000003420.9	ENSMUST00000210642.2	1602	7	1154	2201	1154	-2201	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCCACGCATGGTCATTG	NA	NA	NA	NA	NA	NA	NA	NA	44752015	44744688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44744854_44751333_44751610_44751825
ONT_simulated_read_11765766	chr2	-	639	1	ISM	ENSMUSG00000026737.13	ENSMUST00000006912.12	3477	10	153688	1545	153688	-1545	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCTAAGCCCACAGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	18849249	18848610	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_18848600_18849200
ONT_simulated_read_11771869	chr3	-	2368	11	ISM	ENSMUSG00000028184.13	ENST00000674208.1	5097	21	-39	22736	0	-18256	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCACCATTGCGGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	148660410	148544852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_148544951_148545280_148545407_148552484_148552669_148555401_148555441_148556471_148556658_148557530_148557635_148558202_148558497_148564368_148565170_148571235_148571346_148596047_148596262_148660198
ONT_simulated_read_11772104	chr7	-	1874	4	ISM	ENSMUSG00000030678.8	ENSMUST00000032916.6	2347	5	327	219	327	-218	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGGACAAGAGGTGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	126625297	126621524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126622341_126623615_126623788_126624047_126624112_126624475
ONT_simulated_read_1177220	chr7	+	335	4	ISM	ENSMUSG00000040952.17	ENSMUST00000108428.8	1284	5	-3	1393	-3	-1393	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCGGGTCCTCCAAGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	24584057	24587834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706
ONT_simulated_read_11773137	chr9	-	3540	12	ISM	ENSMUSG00000043154.16	ENSMUST00000066773.9	4461	13	4653	473	4653	-473	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTATAAACAAGTGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	101071619	100982957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_100985169_101002221_101002329_101003507_101003627_101004095_101004272_101021509_101021600_101022673_101022723_101025780_101025938_101030986_101031074_101052526_101052602_101057533_101057637_101063131_101063236_101071357
ONT_simulated_read_1177331	chr6	-	1112	5	ISM	ENSMUSG00000030051.11	ENST00000303795.9	1792	10	18110	11	18110	5	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGATCTTCTGCCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	87630858	87606725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689
ONT_simulated_read_11773617	chr1	+	996	8	ISM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	0	16553	0	-16553	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGGAAAGGAAATGTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	128171898	128190562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529
ONT_simulated_read_11774976	chr17	+	1890	5	ISM	ENSMUSG00000007038.6	ENSMUST00000007253.6	2474	6	610	342	610	-342	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTTGCTGCAGGTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	35150838	35154555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35151085_35151541_35151805_35152978_35153162_35153258_35153482_35153580
ONT_simulated_read_11776088	chr5	-	1536	1	FSM	ENSMUSG00000105434.2	ENSMUST00000197944.2	2200	1	0	664	0	-664	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGGTATCTAGATTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	122623062	122621526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_122621500_122623100
ONT_simulated_read_11781382	chrX	+	475	1	FSM	ENSMUSG00000059461.8	ENSMUST00000118642.2	387	1	0	-88	0	88	mono-exon	FALSE	NA	NA	NA	NA	NA	3395	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGTCTTAAAAGTAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	161349852	161350327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_161349900_161350300
ONT_simulated_read_11781732	chr3	+	611	1	FSM	ENSMUSG00000036894.4	ENSMUST00000049064.4	6793	1	232	5950	232	-5950	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAAGAAGAGTGCAAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	61269290	61269901	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_61269300_61269900
ONT_simulated_read_117840	chr16	+	664	5	ISM	ENSMUSG00000040605.8	ENST00000347667.5	3030	8	51486	13949	51486	-13949	internal_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGATTGGTGCGACCGTG	NA	NA	NA	NA	NA	NA	NA	NA	97209474	97225768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_97209694_97213257_97213387_97214548_97214684_97216278_97216381_97225689
ONT_simulated_read_11785250	chr1	+	821	5	ISM	ENSMUSG00000042207.18	ENST00000648469.1	5383	26	-4	36217	0	-35658	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGGTTGCACAACTCCAA	NA	NA	NA	NA	NA	NA	NA	NA	134487908	134523602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_134488281_134512891_134512970_134516514_134516686_134521066_134521202_134523537
ONT_simulated_read_11786287	chr17	-	1923	15	NIC	ENSMUSG00000059208.16	novel	2428	17	NA	NA	7988	-332	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCCTGCCGGATGATGAA	NA	NA	NA	NA	NA	NA	NA	NA	33896374	33865544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_33865720_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33889054_33889108_33896247
ONT_simulated_read_11787386	chr10	-	1334	5	ISM	ENSMUSG00000034602.16	ENSMUST00000170935.9	5302	34	57816	14994	57816	-14994	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACCTCCACAGTATGGAC	NA	NA	NA	NA	NA	NA	NA	NA	122854114	122846459	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_122846543_122849272_122849896_122850845_122851045_122852167_122852462_122853979
ONT_simulated_read_11789738	chr7	+	122	2	ISM	ENSMUSG00000031068.9	ENSMUST00000211496.2	3440	10	10	21972	10	-21972	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTCTGGGCACCATGGG	NA	NA	NA	NA	NA	NA	NA	NA	137039393	137046722	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_137039501_137046707
ONT_simulated_read_11790201	chr14	-	596	1	ISM	ENSMUSG00000002329.8	ENSMUST00000002400.7	1733	6	1453	581	1453	-581	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTAGGGAGTAGCTCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	55896512	55895916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55895900_55896500
ONT_simulated_read_11790340	chr10	-	457	3	ISM	ENSMUSG00000020216.14	ENSMUST00000020435.11	955	5	1533	347	1533	-345	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCACGGAAAGAGAAGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	80646186	80644676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80644874_80644979_80645063_80646009
ONT_simulated_read_11792505	chr11	-	951	1	ISM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	9011	1581	8762	-1581	mono-exon	FALSE	NA	NA	NA	NA	NA	582	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCCAGCCTGGGCTATA	NA	NA	NA	NA	NA	NA	NA	NA	93850336	93849385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_93849400_93850300
ONT_simulated_read_11793348	chr14	-	473	1	ISM	ENSMUSG00000017485.12	ENSMUST00000017629.12	10335	36	65124	4687	65124	-4687	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGAACTGTGTTCTTAGA	NA	NA	NA	NA	NA	NA	NA	NA	6039460	6038987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_6039000_6039500
ONT_simulated_read_11794171	chr15	-	551	4	ISM	ENSMUSG00000000934.10	ENSMUST00000000958.9	1903	14	14657	0	14657	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTTGTCACTGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	75535992	75528883	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75529064_75529532_75529680_75535204_75535300_75535863
ONT_simulated_read_11794806	chr5	-	438	2	ISM	ENSMUSG00000007415.16	ENSMUST00000007559.15	2545	5	4230	1329	4102	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTCTATTTATAATATAAC	NA	NA	NA	NA	NA	NA	NA	NA	3693704	3691289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_3691581_3693557
ONT_simulated_read_11795318	chr13	-	980	1	ISM	ENSMUSG00000035248.10	ENSMUST00000071703.6	5869	28	50292	315	24875	2	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATCCACATTATTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	59920669	59919689	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_59919700_59920700
ONT_simulated_read_11796694	chr6	-	2088	1	ISM	ENSMUSG00000030256.12	ENSMUST00000032386.11	6133	5	2230	2998	1974	2264	mono-exon	FALSE	NA	NA	NA	NA	NA	295	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAATGTTTATATATGAT	NA	NA	NA	NA	NA	NA	NA	NA	145809054	145806966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_145807000_145809100
ONT_simulated_read_11797094	chr7	-	1250	1	ISM	ENSMUSG00000110365.2	ENSMUST00000209940.2	2720	3	2800	1049	2800	-1049	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAATTACCCAAGGAACT	NA	NA	NA	NA	NA	NA	NA	NA	12928342	12927092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_12927100_12928300
ONT_simulated_read_11797896	chr8	+	872	5	ISM	ENSMUSG00000031770.17	ENST00000379792.6	1761	7	-37	2886	0	-2886	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCTCGCTGAGCAGATTT	NA	NA	NA	NA	NA	NA	NA	NA	95113122	95119097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_95113367_95115983_95116062_95117345_95117477_95118359_95118483_95118801
ONT_simulated_read_11799627	chr5	-	2339	10	ISM	ENSMUSG00000029427.12	ENSMUST00000031376.12	4286	14	6963	1339	6963	-1339	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATATAGAAACAAAATTGT	NA	NA	NA	NA	NA	NA	NA	NA	123852144	123837703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_123839186_123840625_123840744_123841055_123841143_123842585_123842705_123845331_123845475_123846054_123846198_123846634_123846696_123847257_123847324_123847444_123847549_123852128
ONT_simulated_read_11800649	chr2	+	434	1	ISM	ENSMUSG00000068580.12	ENSMUST00000090174.11	2008	11	0	7982	0	-7982	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAGGCCTACCCTGCGCTG	NA	NA	NA	NA	NA	NA	NA	NA	119039114	119039548	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_119039100_119039500
ONT_simulated_read_11803327	chrX	+	531	4	ISM	ENSMUSG00000031312.6	ENST00000538820.1	1390	10	2941	94	2941	-94	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCTAGGTAGGCCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	100495716	100496987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_100495821_100496079_100496194_100496433_100496497_100496737
ONT_simulated_read_11803682	chr4	-	1598	10	ISM	ENSMUSG00000028896.14	ENSMUST00000030726.13	2278	11	5700	619	5700	-619	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATTACCTACAAAACCCAA	NA	NA	NA	NA	NA	NA	NA	NA	132067316	132059852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132066513_132066553_132067235
ONT_simulated_read_11804265	chr11	-	187	1	ISM	ENSMUSG00000017747.14	ENSMUST00000017891.14	2462	9	3960	779	3359	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCTAACCAAGGCAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	100657823	100657636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100657600_100657800
ONT_simulated_read_11804752	chr7	-	226	4	ISM	ENSMUSG00000030760.15	ENST00000533873.1	740	10	57536	7187	57536	-7187	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGGTGTTACAACACAGTT	NA	NA	NA	NA	NA	NA	NA	NA	97901133	97873195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_97873224_97875605_97875708_97893155_97893215_97901096
ONT_simulated_read_11806163	chr18	-	1333	11	ISM	ENSMUSG00000038524.14	ENST00000435817.7	4121	20	4042	1898	4008	-392	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGATGTCCGTTCTCACCTC	NA	NA	NA	NA	NA	NA	NA	NA	38098779	38092533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_38092708_38092830_38092887_38094299_38094388_38095625_38095847_38095972_38096091_38096180_38096265_38096345_38096475_38097060_38097223_38097366_38097472_38097843_38097964_38098703
ONT_simulated_read_1180662	chr16	-	1720	7	ISM	ENSMUSG00000022892.12	ENST00000354192.7	2959	15	158352	20	158268	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	199	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGTTTCTTTGAAGGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	84812220	84751325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_84752321_84759609_84759757_84762557_84762659_84768295_84768350_84774951_84775174_84810514_84810615_84812119
ONT_simulated_read_11808599	chr14	-	942	1	ISM	ENSMUSG00000021965.4	ENSMUST00000022536.3	2260	9	18661	0	18661	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTTATGTTGCCAACTC	NA	NA	NA	NA	NA	NA	NA	NA	58044959	58044017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_58044000_58045000
ONT_simulated_read_1181176	chrX	+	2027	12	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	0	-532	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTACTTTCTCATCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	100473160	100491665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chrX_+_100473369_100474101_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
ONT_simulated_read_11812052	chr10	+	544	4	ISM	ENSMUSG00000078429.10	ENSMUST00000105256.10	4817	8	312	6876	312	-6876	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACAGTTCCTTTAAGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	126814897	126828962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_126815171_126827399_126827546_126828467_126828507_126828876
ONT_simulated_read_11812815	chr1	-	755	1	NIC	ENSMUSG00000040181.15	novel	2388	9	NA	NA	29654	0	mono-exon	FALSE	NA	NA	NA	NA	NA	214	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTGGTCTTTCGTACTC	NA	NA	NA	NA	NA	NA	NA	NA	162657884	162657129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_162657100_162657900
ONT_simulated_read_11817829	chr4	+	1662	11	ISM	ENSMUSG00000028919.12	ENSMUST00000006618.9	3414	17	4057	3137	4057	-2439	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTGAGAGCACGGACCG	NA	NA	NA	NA	NA	NA	NA	NA	140974236	140981738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_140974542_140974688_140974798_140974864_140974942_140975157_140975421_140976297_140976459_140976537_140976691_140976876_140977007_140977873_140977949_140978038_140978129_140978254_140978416_140981600
ONT_simulated_read_1181918	chr15	-	1461	12	ISM	ENSMUSG00000022378.15	ENSMUST00000228226.2	1896	13	37732	277	-24642	-277	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTCTACTGCCGCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	63894460	63803069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63894418
ONT_simulated_read_11819958	chr15	-	1073	7	ISM	ENSMUSG00000022443.18	ENST00000216181.11	7372	40	76326	1152	47440	-1152	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTTTGAGAATCTGATAC	NA	NA	NA	NA	NA	NA	NA	NA	77649991	77645939	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899
ONT_simulated_read_118217	chr13	-	1212	4	ISM	ENSMUSG00000021709.15	ENST00000511297.5	4157	24	45654	13610	45654	-13610	internal_fragment	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTTTTCAAGTTTGATTC	NA	NA	NA	NA	NA	NA	NA	NA	103980141	103970800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_103971537_103975814_103975999_103977661_103977777_103979964
ONT_simulated_read_11821985	chr15	-	618	2	Fusion	ENSMUSG00000079018.11_ENSMUSG00000022584.15	novel	844	4	NA	NA	1071	-92	multi-exon	FALSE	canonical	NA	NA	NA	NA	314	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACACATAAGTATCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	74982475	74916957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Fusion_chr15_-_74917460_74982359
ONT_simulated_read_11822481	chr11	-	183	1	NIC	ENSMUSG00000017291.14	novel	11813	19	NA	NA	47168	-1455	mono-exon	FALSE	NA	NA	NA	NA	NA	476	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTCTCACAATCCTACTG	NA	NA	NA	NA	NA	NA	NA	NA	77429155	77428972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_77429000_77429200
ONT_simulated_read_11825011	chr19	-	1860	1	ISM	ENSMUSG00000118383.2	ENSMUST00000236905.2	2697	2	5486	653	5486	-653	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTGGATACATTGCATT	NA	NA	NA	NA	NA	NA	NA	NA	9808775	9806915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_9806900_9808800
ONT_simulated_read_11825244	chr12	+	661	4	ISM	ENSMUSG00000011179.9	ENSMUST00000171737.3	2208	12	4664	274	4664	-274	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTAACTTACTGCTAGTT	NA	NA	NA	NA	NA	NA	NA	NA	17599458	17600811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_17599588_17599668_17599782_17599863_17600079_17600607
ONT_simulated_read_11828634	chr13	-	1277	1	ISM	ENSMUSG00000033102.16	ENSMUST00000039318.16	5859	14	78352	2815	52006	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	64344450	64343173	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_64343200_64344400
ONT_simulated_read_11828774	chr5	-	2273	13	ISM	ENSMUSG00000029657.16	ENSMUST00000202089.4	3054	17	5865	114	5698	-114	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTACAGTATTGCTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	149553938	149540747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803
ONT_simulated_read_11829246	chr5	-	644	2	ISM	ENSMUSG00000028958.16	ENSMUST00000115036.8	1455	3	365	583	0	-572	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	263	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGCTCCTGCTCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	24651950	24651046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_24651272_24651531
ONT_simulated_read_11831015	chr8	-	745	2	ISM	ENSMUSG00000002393.15	ENSMUST00000002466.9	2218	4	5714	381	5714	-381	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGGCCCTATGGCTCGG	NA	NA	NA	NA	NA	NA	NA	NA	71828890	71827151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71827399_71828392
ONT_simulated_read_11833148	chr2	-	679	4	ISM	ENSMUSG00000002108.11	ENST00000441012.7	1829	10	2737	6240	2737	-6153	internal_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGAGCATCACCTTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	91022383	91020589	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_91020630_91020806_91020987_91021083_91021293_91022133
ONT_simulated_read_11834202	chr5	-	195	1	ISM	ENSMUSG00000055204.16	ENSMUST00000014421.15	10458	34	137263	1954	110429	-379	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGACAGCCAATTCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	90377173	90376978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_90377000_90377200
ONT_simulated_read_11834390	chr6	-	558	6	ISM	ENSMUSG00000030298.11	ENSMUST00000032440.6	1353	9	16	2818	16	-2818	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTTGTGCCTGGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	113717688	113707840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914_113714960_113717605
ONT_simulated_read_11836755	chr8	-	541	5	ISM	ENSMUSG00000035770.9	ENST00000443351.6	1499	12	2255	5672	2248	1979	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAAGCCAGAAGACGCGTA	NA	NA	NA	NA	NA	NA	NA	NA	105167188	105152644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_105152703_105154677_105154814_105156046_105156141_105157032_105157203_105167105
ONT_simulated_read_11836970	chr6	-	1860	1	FSM	ENSMUSG00000076012.3	ENSMUST00000102058.3	82	1	-814	-964	-814	964	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGGGGGTAGGGTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	85314169	85312309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_85312300_85314200
ONT_simulated_read_1183780	chr4	+	1906	10	FSM	ENSMUSG00000028653.17	ENST00000372818.5	1907	10	1	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGGCTGTCTCTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	122910389	122948652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122942944_122943058_122945858_122945969_122946276_122946395_122947915
ONT_simulated_read_1183831	chr4	-	1179	6	ISM	ENSMUSG00000028479.19	ENSMUST00000173234.8	2149	10	6734	5272	2	-5135	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTGCAGATGTGTGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	44060226	44042229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_44042293_44044758_44044970_44045902_44045991_44052770_44052984_44055204_44055358_44059775
ONT_simulated_read_11839193	chr2	-	378	1	ISM	ENSMUSG00000048058.18	ENSMUST00000058790.12	3833	6	233230	2575	233230	0	mono-exon	FALSE	NA	NA	NA	NA	NA	304	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGAATGACCTGGCACT	NA	NA	NA	NA	NA	NA	NA	NA	101783500	101783122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_101783100_101783500
ONT_simulated_read_11842469	chrX	+	1136	1	FSM	ENSMUSG00000081255.2	ENSMUST00000119296.2	2136	1	0	1000	0	-1000	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGACCCGTCCAGCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	13168523	13169659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_13168500_13169700
ONT_simulated_read_1184259	chr13	-	682	4	ISM	ENSMUSG00000021592.19	ENSMUST00000239063.2	3657	8	26390	2120	26390	-2120	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGGACCAGAAGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	76220389	76210660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_76210722_76213398_76213624_76214753_76214979_76220218
ONT_simulated_read_11843150	chrX	-	1635	8	ISM	ENSMUSG00000031150.14	ENST00000496529.6	2131	9	265	340	265	-340	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGATGCCCCCACCCAC	NA	NA	NA	NA	NA	NA	NA	NA	7604494	7599694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_7600338_7601310_7601410_7601539_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400
ONT_simulated_read_11843332	chr6	-	333	5	ISM	ENSMUSG00000019210.11	ENST00000399796.6	1001	7	10749	490	10749	-490	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGGAGCCTTGTTTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	120784613	120772711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_120772726_120774837_120774926_120778003_120778099_120780268_120780338_120784546
ONT_simulated_read_11846239	chr5	-	687	1	ISM	ENSMUSG00000049537.11	ENSMUST00000053543.11	2350	12	75877	487	75877	-487	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCTATTTATATTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	83427165	83426478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_83426500_83427200
ONT_simulated_read_11850287	chr12	-	1144	1	ISM	ENSMUSG00000042628.9	ENSMUST00000221919.2	4420	13	49019	394	49019	-103	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTCAACAGATCATGAGG	NA	NA	NA	NA	NA	NA	NA	NA	83594869	83593725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_83593700_83594900
ONT_simulated_read_11855271	chrX	-	1315	4	ISM	ENSMUSG00000087174.8	ENSMUST00000127533.8	3164	6	1472	1683	1411	-63	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTTTCATCTCTCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	104112230	104082485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_104083419_104091514_104091617_104110364_104110484_104112069
ONT_simulated_read_11855487	chr16	+	881	6	FSM	ENSMUSG00000022832.12	ENST00000405845.7	846	6	-27	-8	-27	-7	multi-exon	FALSE	canonical	NA	NA	NA	NA	1367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGGAATTCGTGTGTAA	NA	NA	NA	NA	NA	NA	NA	NA	34470290	34498981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_34470392_34487053_34487182_34490266_34490385_34491470_34491633_34497505_34497682_34498785
ONT_simulated_read_11856210	chr8	+	626	4	ISM	ENSMUSG00000025521.16	ENSMUST00000026595.13	1122	6	12358	2	12289	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAATGTTTTGTATGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	65412194	65421683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_65412262_65416849_65416985_65418190_65418294_65421362
ONT_simulated_read_11858494	chr10	-	2140	1	ISM	ENSMUSG00000050663.9	ENSMUST00000061632.9	5722	19	399835	575	399835	-573	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGAGTTTGAGGGGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	114237440	114235300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_114235300_114237400
ONT_simulated_read_11862889	chr10	+	952	1	FSM	ENSMUSG00000078348.5	ENSMUST00000105139.5	3841	1	0	2889	0	-2889	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGGGGACATTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	12881086	12882038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_12881100_12882000
ONT_simulated_read_11864057	chr8	-	844	1	ISM	ENSMUSG00000070044.16	ENSMUST00000093526.13	5469	14	42923	1800	42923	-1800	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAACATCAGAATCCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	45792405	45791561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_45791600_45792400
ONT_simulated_read_11866564	chr1	-	625	4	ISM	ENSMUSG00000041779.6	ENST00000182527.4	1467	12	74901	1221	74899	-1221	internal_fragment	FALSE	canonical	NA	NA	NA	NA	210	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTCTTCTTTCATAAAC	NA	NA	NA	NA	NA	NA	NA	NA	21074554	21071647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_21071860_21073193_21073358_21074061_21074206_21074449
ONT_simulated_read_11867217	chr5	-	1277	1	ISM	ENSMUSG00000029634.16	ENSMUST00000161859.8	3452	5	9656	1431	9002	-666	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGCTGAAATGCTAGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	146148709	146147432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_146147400_146148700
ONT_simulated_read_11867311	chr10	-	240	1	Genic_Genomic	ENSMUSG00000101014.2	novel	NA	NA	NA	NA	5153	30	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAGAGTGTAGTGGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	14025037	14024797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr10_-_14024800_14025000
ONT_simulated_read_11868287	chr7	+	953	9	ISM	ENSMUSG00000030982.20	ENSMUST00000033280.14	2934	24	42867	267	42867	-267	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCGAAGCAAACAACCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	118406213	118440443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
ONT_simulated_read_11872084	chr11	-	904	1	ISM	ENSMUSG00000038967.14	ENSMUST00000038431.8	2246	11	14053	140	14053	-140	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAGCCCTATGTACATA	NA	NA	NA	NA	NA	NA	NA	NA	94918127	94917223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_94917200_94918100
ONT_simulated_read_11876979	chr2	-	359	1	ISM	ENSMUSG00000087179.9	ENSMUST00000137463.8	874	4	6413	0	6413	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGGAGGGGGACACTGT	NA	NA	NA	NA	NA	NA	NA	NA	156675327	156674968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_156675000_156675300
ONT_simulated_read_11878291	chr5	-	1279	10	ISM	ENSMUSG00000042216.14	ENST00000400359.4	3573	24	9307	18907	993	1949	internal_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGACACCCTTCCTCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	113427460	113411590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_113411703_113413744_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113425374_113425540_113426998_113427132_113427322
ONT_simulated_read_118784	chr11	-	1664	2	ISM	ENSMUSG00000069892.10	ENSMUST00000101295.9	5985	4	11430	4067	11430	-4067	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGTTTGGTGAGTATG	NA	NA	NA	NA	NA	NA	NA	NA	48930622	48910767	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_48911220_48929410
ONT_simulated_read_11880130	chr13	+	320	1	ISM	ENSMUSG00000000078.8	ENST00000542957.1	4221	3	16	8697	0	-8593	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTCGGCTCTGCCGTCC	NA	NA	NA	NA	NA	NA	NA	NA	5911480	5911800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_5911500_5911800
ONT_simulated_read_11880203	chr5	+	748	6	ISM	ENSMUSG00000029250.6	ENST00000431623.6	3645	24	-5	25728	-5	-25575	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACCATACATCAAGCAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	77458337	77471443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_77458478_77460997_77461071_77467810_77467924_77468057_77468278_77468801_77468961_77471400
ONT_simulated_read_11880675	chr16	+	982	7	ISM	ENSMUSG00000045983.17	ENSMUST00000115460.8	5638	32	7522	9344	7522	-9011	internal_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATAATGCATGACTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	20499788	20502287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167
ONT_simulated_read_11883377	chr14	-	1477	14	ISM	ENSMUSG00000040472.16	ENSMUST00000163889.3	1886	17	1029	152	-727	-132	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCAGGGCAACTCGCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	55958691	55953933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592
ONT_simulated_read_1188431	chrX	-	885	1	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	114128	1898	114128	-1898	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAATTTGCCTGTTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	40886650	40885765	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_40885800_40886600
ONT_simulated_read_1189101	chr10	-	545	1	FSM	ENSMUSG00000057134.7	ENSMUST00000075686.7	4558	1	0	4013	0	-4013	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGCCTGGGCGTGTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	67384898	67384353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_67384400_67384900
ONT_simulated_read_11892584	chr7	-	1978	1	ISM	ENSMUSG00000053985.11	ENSMUST00000207873.2	3411	5	11987	1057	5341	-525	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTAGCAGGATGGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	29738818	29736840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_29736800_29738800
ONT_simulated_read_11894882	chrX	+	193	1	ISM	ENSMUSG00000008035.13	ENSMUST00000115524.8	2022	2	0	2108	0	-2100	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGCCGGAGCAACCACAG	NA	NA	NA	NA	NA	NA	NA	NA	10583628	10583821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_10583600_10583800
ONT_simulated_read_11895622	chr8	-	1927	4	ISM	ENSMUSG00000034189.6	ENSMUST00000212517.2	2215	5	2021	294	2021	-294	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCCCCTTCAGAGCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	120294713	120289832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_120290877_120292382_120292611_120292767_120293214_120294504
ONT_simulated_read_11895692	chr2	+	653	5	ISM	ENSMUSG00000003604.15	ENST00000306730.8	1334	6	33	1350	33	-1122	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAAGGAGCTGGGCATGC	NA	NA	NA	NA	NA	NA	NA	NA	112323308	112460134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_112323567_112344794_112344973_112455499_112455571_112458093_112458190_112460084
ONT_simulated_read_11897275	chr3	+	1685	11	ISM	ENSMUSG00000068823.11	ENSMUST00000198180.5	3849	19	13	10865	0	-10023	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCACTTTTTCCAATCCTA	NA	NA	NA	NA	NA	NA	NA	NA	102927935	102954442	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329
ONT_simulated_read_11899155	chr7	-	949	2	ISM	ENSMUSG00000058420.9	ENSMUST00000081574.8	2764	8	35392	531	35392	-528	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTATTTCTGGGACTCCC	NA	NA	NA	NA	NA	NA	NA	NA	118007391	117980470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_117981276_118007247
ONT_simulated_read_11900213	chr17	-	618	2	ISM	ENSMUSG00000050410.16	ENSMUST00000160885.2	1732	4	1795	347	1795	-347	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	809	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCCTCCAAGTTTCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	35825887	35823980	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_35824082_35825370
ONT_simulated_read_11902514	chrX	-	1113	8	ISM	ENSMUSG00000090084.8	ENST00000432886.6	1694	9	43855	341	43795	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	221	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCATGGTGGCTCCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	9940049	9905145	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_9905340_9913913_9914036_9915854_9915989_9921090_9921271_9921917_9922040_9925191_9925319_9935611_9935804_9940007
ONT_simulated_read_11902973	chr4	+	438	5	ISM	ENSMUSG00000010517.8	ENSMUST00000102724.5	4468	19	409	227327	409	-227327	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTAAAATGCTGTTAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	109534193	109593830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_109534270_109567986_109568056_109577952_109578000_109584586_109584790_109593787
ONT_simulated_read_11905652	chr5	-	688	1	ISM	ENSMUSG00000029096.16	ENSMUST00000114233.3	1901	7	17226	0	17226	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCTAATCTAAGTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	35819590	35818902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_35818900_35819600
ONT_simulated_read_11905664	chr14	-	3434	14	ISM	ENSMUSG00000021910.16	ENSMUST00000168206.8	4990	17	2735	1219	2735	-1219	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCCGCGTCAAGTTCACC	NA	NA	NA	NA	NA	NA	NA	NA	30910752	30894105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_30894136_30894393_30894556_30895020_30895150_30895543_30895701_30896212_30896844_30898286_30899670_30901792_30901843_30902778_30902907_30906898_30907008_30907268_30907383_30908715_30908845_30909015_30909202_30909606_30909676_30910595
ONT_simulated_read_11905783	chr5	-	445	1	ISM	ENSMUSG00000018974.8	ENSMUST00000019118.8	4447	19	29240	380	29240	-380	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCCCCCAGCCCTGCACA	NA	NA	NA	NA	NA	NA	NA	NA	113881331	113880886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_113880900_113881300
ONT_simulated_read_11906230	chr11	-	254	2	ISM	ENSMUSG00000018287.13	ENSMUST00000018431.13	1159	7	4973	320	4824	-302	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTCCAGCAAGGCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	70555269	70554916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_70555047_70555145
ONT_simulated_read_11906296	chr8	-	480	5	ISM	ENSMUSG00000055553.17	ENSMUST00000121623.8	884	7	4646	178	4584	-178	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGACAAGATGATCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	70971167	70961099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70961179_70961945_70962033_70962170_70962285_70968044_70968092_70971014
ONT_simulated_read_11907310	chr15	-	174	1	NIC	ENSMUSG00000062906.13	novel	2412	20	NA	NA	4839	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATCTCTGTCTCCGTTAC	NA	NA	NA	NA	NA	NA	NA	NA	89007683	89007509	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_89007500_89007700
ONT_simulated_read_1191114	chr16	+	2727	10	ISM	ENSMUSG00000039456.11	ENSMUST00000044068.10	4178	17	21661	374	21661	-374	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTTTTACTGTATTATG	NA	NA	NA	NA	NA	NA	NA	NA	93650669	93672586	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
ONT_simulated_read_11912141	chr16	-	488	2	FSM	ENSMUSG00000004071.14	ENST00000564828.5	515	2	28	-1	28	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTGCAATTCAGAAGATA	NA	NA	NA	NA	NA	NA	NA	NA	4587633	4586155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_4586514_4587503
ONT_simulated_read_1191386	chr5	-	1773	6	ISM	ENSMUSG00000054814.15	ENSMUST00000068058.14	4557	9	39063	2305	39052	-2305	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGCAGATTGAACAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	74190029	74161691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801
ONT_simulated_read_11914659	chr6	-	1030	2	ISM	ENSMUSG00000045009.10	ENST00000412055.6	3064	4	4862	888	4740	-888	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATTGACCTGGGCACTGG	NA	NA	NA	NA	NA	NA	NA	NA	113474039	113472143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113473027_113473892
ONT_simulated_read_11915418	chr14	-	219	1	ISM	ENSMUSG00000021811.8	ENSMUST00000022345.7	1631	5	3462	592	3462	-592	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAGTTTCTAGAATTCGC	NA	NA	NA	NA	NA	NA	NA	NA	20435516	20435297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20435300_20435500
ONT_simulated_read_11917244	chr5	+	740	6	ISM	ENSMUSG00000025340.15	ENSMUST00000119797.8	2690	9	26	5590	26	-5585	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTGTTCTGCCCAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	130200664	130237593	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_130200736_130216241_130216428_130219717_130219885_130226790_130226958_130235849_130235932_130237526
ONT_simulated_read_11920024	chr19	+	831	4	ISM	ENSMUSG00000024845.20	ENSMUST00000150627.11	1472	6	1611	314	1582	261	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCAGGCACCAGGCCTAG	NA	NA	NA	NA	NA	NA	NA	NA	4177570	4181992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4177639_4177758_4177836_4181227_4181282_4181360
ONT_simulated_read_11921330	chr10	-	1896	4	ISM	ENSMUSG00000020114.13	ENSMUST00000020315.13	7766	15	27914	8794	27914	-8794	internal_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGACCATTATGATATTA	NA	NA	NA	NA	NA	NA	NA	NA	119048046	119043953	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_119044097_119044177_119044348_119045878_119045975_119046559
ONT_simulated_read_11921586	chr11	-	476	4	ISM	ENSMUSG00000018481.10	ENSMUST00000018625.10	6463	13	313	27009	313	-27009	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCACTGGTTCCGAGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	85125643	85105096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_85105186_85105935_85106088_85107261_85107351_85125497
ONT_simulated_read_11923660	chr3	-	3985	1	ISM	ENSMUSG00000041842.16	ENSMUST00000107689.7	5918	12	33944	303	33006	-303	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCAGCAGAGGCTGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	84353792	84349807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_84349800_84353800
ONT_simulated_read_11924821	chr11	-	517	3	ISM	ENSMUSG00000097487.8	ENSMUST00000107252.9	853	7	2717	0	2717	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCCTTCCCTTCCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	101312778	101309637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_101310013_101310500_101310555_101312690
ONT_simulated_read_1192489	chr16	-	1208	7	ISM	ENSMUSG00000022783.12	ENST00000313311.10	1607	10	41827	105	41827	-105	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	378	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACGTAACAGTTTAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	16605262	16571559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_16571742_16584832_16584950_16595186_16595379_16598484_16598638_16599608_16599783_16601598_16601805_16605078
ONT_simulated_read_11926569	chr5	-	1048	10	ISM	ENSMUSG00000029189.11	ENST00000502949.5	3382	23	54951	9194	54951	-9194	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCCATTCCAGTAACACC	NA	NA	NA	NA	NA	NA	NA	NA	53302863	53274426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_53274509_53279091_53279202_53280508_53280594_53280727_53280819_53289135_53289220_53293114_53293243_53295127_53295305_53297149_53297213_53301383_53301525_53302776
ONT_simulated_read_11930683	chr4	-	684	1	ISM	ENSMUSG00000025413.14	ENSMUST00000026480.13	2121	10	15747	258	15669	-258	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAATGGGCAGTGGTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	106520394	106519710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_106519700_106520400
ONT_simulated_read_11933988	chr5	-	534	1	ISM	ENSMUSG00000029394.12	ENSMUST00000031341.11	1315	4	8543	178	4126	10	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAACCTCCCAAGCACCC	NA	NA	NA	NA	NA	NA	NA	NA	124484191	124483657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_124483700_124484200
ONT_simulated_read_11935877	chrX	-	772	1	ISM	ENSMUSG00000048949.9	ENSMUST00000133472.2	2199	2	945	581	944	-577	mono-exon	FALSE	NA	NA	NA	NA	NA	212	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTGGTCTACCAATTTA	NA	NA	NA	NA	NA	NA	NA	NA	102208068	102207296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_102207300_102208100
ONT_simulated_read_11941269	chr7	+	2592	20	ISM	ENSMUSG00000005609.17	ENSMUST00000005749.6	4300	25	1264	4870	1264	-4870	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTATGTGGAGAAGACCAAA	NA	NA	NA	NA	NA	NA	NA	NA	110629421	110650714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656
ONT_simulated_read_11942786	chr5	-	398	1	ISM	ENSMUSG00000029416.18	ENSMUST00000031367.15	2732	8	35	21320	35	-21320	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGCCCGAGCTCGTGCGCA	NA	NA	NA	NA	NA	NA	NA	NA	127694445	127694047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_127694000_127694400
ONT_simulated_read_11943137	chr11	-	1525	1	ISM	ENSMUSG00000050541.15	ENSMUST00000167574.2	3047	2	59908	294	59908	-294	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCCAAGTCCTGGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	43667251	43665726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_43665700_43667300
ONT_simulated_read_1194431	chr16	-	347	1	ISM	ENSMUSG00000059305.13	ENSMUST00000075017.5	766	2	288	218	160	1	mono-exon	FALSE	NA	NA	NA	NA	NA	248	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCGTATACAGATTTGGGAT	NA	NA	NA	NA	NA	NA	NA	NA	16686831	16686484	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_16686500_16686800
ONT_simulated_read_1194595	chr5	-	343	1	ISM	ENSMUSG00000029499.12	ENSMUST00000031472.12	1041	5	11562	0	9128	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTTCTCAGCACAGTT	NA	NA	NA	NA	NA	NA	NA	NA	110422490	110422147	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_110422100_110422500
ONT_simulated_read_1194887	chr7	-	444	4	ISM	ENSMUSG00000030541.17	ENSMUST00000107384.10	1745	11	19278	197	19190	16	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	264	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTCTAGGGGACATTTT	NA	NA	NA	NA	NA	NA	NA	NA	79745862	79744790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770
ONT_simulated_read_11952844	chr4	-	807	7	ISM	ENSMUSG00000028484.17	ENSMUST00000030207.15	3251	16	22778	1235	22772	-1235	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTTAAGTAGTTGGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	83381918	83375151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_83375317_83376311_83376424_83378080_83378295_83378390_83378493_83378695_83378767_83379422_83379479_83381831
ONT_simulated_read_11953098	chr14	-	571	3	ISM	ENSMUSG00000021972.15	ENST00000524238.3	1687	9	71433	110	71433	-110	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCCAAGAAAGTGCTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	65063142	65060741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_65061148_65062747_65062820_65063049
ONT_simulated_read_11953138	chr10	+	402	3	ISM	ENSMUSG00000006731.11	ENST00000449184.7	1425	6	283	3513	153	-1324	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCCTTCCCTTGCCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	127001246	127002627	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_127001389_127001872_127002092_127002586
ONT_simulated_read_1195340	chr1	-	455	1	ISM	ENSMUSG00000026098.14	ENSMUST00000027267.14	3054	13	99716	7661	84770	230	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGCCAATTATATTAACA	NA	NA	NA	NA	NA	NA	NA	NA	53236461	53236006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_53236000_53236500
ONT_simulated_read_11954369	chr7	-	417	1	FSM	ENSMUSG00000082016.4	ENSMUST00000117129.2	765	1	0	348	0	-348	mono-exon	FALSE	NA	NA	NA	NA	NA	410	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCAGGTACGCAGACCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	27169960	27169543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_27169500_27170000
ONT_simulated_read_11957361	chr8	-	693	1	FSM	ENSMUSG00000110528.2	ENSMUST00000211890.2	174	1	0	-519	0	519	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGGATCTTACAATATTAC	NA	NA	NA	NA	NA	NA	NA	NA	110067496	110066803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_110066800_110067500
ONT_simulated_read_1195809	chr7	-	1155	1	ISM	ENSMUSG00000025499.19	ENSMUST00000026572.11	2828	6	2809	892	1789	-63	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTTAAGGTGGGTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	140771064	140769909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_140769900_140771100
ONT_simulated_read_11959439	chr6	-	1869	5	ISM	ENSMUSG00000034312.16	ENST00000618604.4	3232	11	-5	14422	-5	-14422	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACCCAGACACCATCTTC	NA	NA	NA	NA	NA	NA	NA	NA	90671833	90653852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_90653897_90655005_90655129_90657472_90657635_90666561_90667809_90671540
ONT_simulated_read_11959720	chrX	-	464	1	ISM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	144254	1094	43195	-315	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCATCCTTACAATTAAGA	NA	NA	NA	NA	NA	NA	NA	NA	23087067	23086603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_23086600_23087100
ONT_simulated_read_1195974	chr17	+	480	4	ISM	ENSMUSG00000034709.9	ENST00000281394.8	2887	21	26	40490	0	-40490	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAAGAAAATCGAGGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	88837545	88855058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_88837747_88850272_88850342_88852748_88852896_88854995
ONT_simulated_read_11961054	chr2	-	686	2	ISM	ENSMUSG00000078923.11	ENSMUST00000060645.13	1586	3	14043	819	14043	103	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGGCGCTTTGGCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	167459849	167450582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_167451168_167459748
ONT_simulated_read_11962440	chr16	-	179	1	NIC	ENSMUSG00000022956.12	novel	838	7	NA	NA	6295	0	mono-exon	FALSE	NA	NA	NA	NA	NA	437	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGAGGAGCCTTGTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	91722280	91722101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_91722100_91722300
ONT_simulated_read_11964022	chr10	-	4759	1	ISM	ENSMUSG00000074802.12	ENSMUST00000099374.9	6748	11	29497	889	29472	-449	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCAATGTATGGACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	89250332	89245573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_89245600_89250300
ONT_simulated_read_11964438	chr4	-	951	8	ISM	ENSMUSG00000028656.15	ENSMUST00000069533.12	2620	13	18340	1127	18340	-1127	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAAGTTGGTCACCACAG	NA	NA	NA	NA	NA	NA	NA	NA	122761364	122753966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277
ONT_simulated_read_11964627	chr6	-	978	1	ISM	ENSMUSG00000001157.14	ENSMUST00000001185.14	2949	14	40343	295	40200	-295	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTGAGTGCCTTTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	86670022	86669044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_86669000_86670000
ONT_simulated_read_11965384	chr11	+	244	1	ISM	ENSMUSG00000059278.10	ENSMUST00000144531.2	671	3	0	790	0	-784	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCCGGAGCTGGGCCGA	NA	NA	NA	NA	NA	NA	NA	NA	69286472	69286716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_69286500_69286700
ONT_simulated_read_11967554	chr12	-	305	2	ISM	ENSMUSG00000021079.17	ENSMUST00000221892.2	734	5	11071	204	6483	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCACCAGAAAGAGTCAAAA	NA	NA	NA	NA	NA	NA	NA	NA	71172330	71170166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_71170377_71172235
ONT_simulated_read_11967867	chr11	-	911	6	ISM	ENSMUSG00000019373.12	ENSMUST00000019517.10	1646	12	13408	0	10592	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	477	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAATGTGTGTTCTCTCA	NA	NA	NA	NA	NA	NA	NA	NA	59717256	59708620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59715275_59717115
ONT_simulated_read_119732	chr4	+	941	7	ISM	ENSMUSG00000063524.14	ENSMUST00000080926.13	2027	12	0	3666	0	-3660	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	3545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCGCATTGGAGCAGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	150321408	150329670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571
ONT_simulated_read_11973632	chr9	+	1193	9	ISM	ENSMUSG00000025232.9	ENSMUST00000026262.8	1996	14	0	3144	0	-3144	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTTCATGAAGAAAAAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	59446822	59469248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225
ONT_simulated_read_11973876	chr7	-	668	1	ISM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	10099	0	10099	0	mono-exon	FALSE	NA	NA	NA	NA	NA	828	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTTTTTAACT	NA	NA	NA	NA	NA	NA	NA	NA	139686290	139685622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_139685600_139686300
ONT_simulated_read_11976427	chr7	+	682	7	ISM	ENSMUSG00000030782.18	ENSMUST00000165667.8	1812	10	158	1589	0	-1244	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCGGTTGTTCCACAACC	NA	NA	NA	NA	NA	NA	NA	NA	127847347	127851294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_127847465_127847591_127847645_127847815_127847893_127848058_127848147_127848261_127848368_127848471_127848667_127851248
ONT_simulated_read_11979927	chr11	-	796	5	ISM	ENSMUSG00000037935.17	ENST00000642459.1	1000	8	10726	0	10722	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	682	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCCTCCACACCCAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	99110572	99103939	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440
ONT_simulated_read_11980626	chr16	-	621	1	FSM	ENSMUSG00000084838.4	ENSMUST00000117664.2	286	1	0	-335	0	335	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCAGTAAGTTATTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	19995762	19995141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_19995100_19995800
ONT_simulated_read_11981158	chr15	-	300	1	ISM	ENSMUSG00000009733.10	ENSMUST00000229696.2	3302	16	47567	1395	47346	-1346	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGTTTGTAGAGGGCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	100402322	100402022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_100402000_100402300
ONT_simulated_read_11984836	chr2	-	471	4	ISM	ENSMUSG00000044627.12	ENSMUST00000113400.3	522	5	436	0	435	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATTGGGAGGGGTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	32177645	32168929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608
ONT_simulated_read_11986110	chr11	-	1945	9	ISM	ENSMUSG00000001036.18	ENSMUST00000108712.8	4458	11	32758	2296	-114	-129	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGTGGGGGCCAGTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	61437737	61410370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424414_61424508_61426096_61426210_61434983_61435155_61436975
ONT_simulated_read_11993526	chr6	-	787	7	NNC	ENSMUSG00000004980.17	novel	1638	11	NA	NA	3368	-268	at_least_one_novel_splicesite	TRUE	canonical	NA	NA	NA	NA	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGTTTCTTAGCTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	51443384	51440007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443294
ONT_simulated_read_11994114	chr8	-	703	1	ISM	ENSMUSG00000031974.9	ENSMUST00000075578.7	4306	13	28562	1399	16614	-1397	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGTTTGACGCGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	124681299	124680596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_124680600_124681300
ONT_simulated_read_11994353	chr16	+	590	7	ISM	ENSMUSG00000022702.17	ENST00000340170.8	3393	21	139	58238	139	-15940	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTTAGTAAAAGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	18696161	18730821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_18696270_18713523_18713587_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795
ONT_simulated_read_11999166	chr2	-	745	1	ISM	ENSMUSG00000009566.13	ENSMUST00000028148.11	2273	15	10741	91	9278	0	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGGGGACTGTGTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	32573456	32572711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_32572700_32573500
ONT_simulated_read_11999951	chr11	-	1465	7	ISM	ENSMUSG00000009356.13	ENST00000421678.6	1896	10	5661	102	5661	-102	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAACCCGTTCCAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	87707444	87697773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_87697881_87698068_87698307_87699952_87700127_87700941_87701195_87705072_87705234_87705722_87706048_87707237
ONT_simulated_read_12000273	chr3	+	849	6	ISM	ENSMUSG00000027777.16	ENSMUST00000182997.3	1557	7	0	5448	0	-103	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCACACAGAACAAGATGC	NA	NA	NA	NA	NA	NA	NA	NA	68491511	68528349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_68491758_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305
ONT_simulated_read_1200356	chr11	+	511	4	ISM	ENSMUSG00000001555.11	ENSMUST00000001595.10	2584	10	4727	3128	4658	-2416	internal_fragment	FALSE	canonical	NA	NA	NA	NA	151	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCACAACCCGAAGGACAC	NA	NA	NA	NA	NA	NA	NA	NA	100311249	100312522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_100311372_100311716_100311907_100312019_100312166_100312469
ONT_simulated_read_12007320	chr1	-	1513	1	ISM	ENSMUSG00000042807.16	ENSMUST00000120904.8	11263	29	380740	4920	227222	-617	mono-exon	FALSE	NA	NA	NA	NA	NA	293	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAAAAATTTTGTATGG	NA	NA	NA	NA	NA	NA	NA	NA	53852467	53850954	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_53851000_53852500
ONT_simulated_read_1200761	chr16	-	639	8	ISM	ENSMUSG00000022844.9	ENSMUST00000023550.9	1809	17	37330	13098	37330	-13098	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGCAGGAAGATTTCACAT	NA	NA	NA	NA	NA	NA	NA	NA	35273913	35230779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820
ONT_simulated_read_12007612	chr10	-	2087	15	ISM	ENSMUSG00000040354.15	ENST00000628866.2	2553	19	3286	-13	3286	-4	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGCCCTCTCCTGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	127144212	127132094	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126
ONT_simulated_read_12008428	chr4	+	1785	11	ISM	ENSMUSG00000039768.17	ENSMUST00000062904.11	3151	16	36124	828	36124	84	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCAGACCCTGGGTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	152054271	152065766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
ONT_simulated_read_12015904	chr11	+	531	1	ISM	ENSMUSG00000017715.12	ENSMUST00000132676.8	2863	10	0	37189	0	-36708	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCGCTCGCACTGTCAATAA	NA	NA	NA	NA	NA	NA	NA	NA	117877117	117877648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_117877100_117877600
ONT_simulated_read_12017098	chr3	+	1121	10	FSM	ENSMUSG00000028060.15	ENST00000368319.3	1158	10	-13	50	-13	-50	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCCACCTGTGCCAACACA	NA	NA	NA	NA	NA	NA	NA	NA	88593143	88607758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607668
ONT_simulated_read_12018863	chr1	-	445	5	ISM	ENSMUSG00000073481.10	ENSMUST00000068725.10	1917	8	13167	791	13167	-791	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGTCCTCATGGCCATCT	NA	NA	NA	NA	NA	NA	NA	NA	184564911	184546055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184564772
ONT_simulated_read_1202038	chr6	+	2324	18	FSM	ENSMUSG00000030269.15	ENST00000353332.9	2346	18	19	3	0	-2	multi-exon	TRUE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCTTTTCATTAGCATT	NA	NA	NA	NA	NA	NA	NA	NA	113214803	113258157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_113215083_113217245_113217395_113226831_113226941_113230691_113230768_113231050_113231112_113232776_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113257563
ONT_simulated_read_12020518	chr1	+	1363	7	ISM	ENSMUSG00000055567.19	ENSMUST00000212557.3	9777	64	211252	-461	211252	461	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAATTAGAAACTAAACTA	NA	NA	NA	NA	NA	NA	NA	NA	66718857	66735216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_66718903_66722307_66722447_66724774_66724832_66731666_66731749_66732850_66732963_66733523_66733724_66734488
ONT_simulated_read_1202189	chr4	+	589	5	ISM	ENSMUSG00000028683.15	ENSMUST00000106448.9	1555	12	47069	0	44316	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	137	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCAGTGGTAGAG	NA	NA	NA	NA	NA	NA	NA	NA	116923667	116944049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_116923762_116925940_116926019_116927835_116927985_116938754_116938859_116943885
ONT_simulated_read_12022137	chr10	-	633	5	ISM	ENSMUSG00000020251.14	ENSMUST00000065815.13	1240	10	25820	2162	25820	-2162	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGGATGCAGAAGAATGT	NA	NA	NA	NA	NA	NA	NA	NA	82500631	82490538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_82490683_82495346_82495460_82496563_82496649_82497999_82498118_82500458
ONT_simulated_read_12023679	chr18	+	574	3	ISM	ENSMUSG00000024483.20	ENST00000297183.10	7604	33	83714	11747	83607	-11747	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCAGTGGTGTCGAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	36777350	36779765	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_36777768_36778157_36778293_36779743
ONT_simulated_read_1202630	chr4	-	266	1	FSM	ENSMUSG00000083757.3	ENSMUST00000119415.2	392	1	-52	178	0	-178	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGCGTTATAAGCCCTAGA	NA	NA	NA	NA	NA	NA	NA	NA	131947800	131947534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_131947500_131947800
ONT_simulated_read_12026587	chr9	-	275	2	ISM	ENSMUSG00000066456.15	ENSMUST00000162246.9	983	6	35592	308	35377	-308	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTTATCCTCTTATGGT	NA	NA	NA	NA	NA	NA	NA	NA	82993146	82992308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_82992483_82993045
ONT_simulated_read_12027237	chr4	-	1755	5	ISM	ENSMUSG00000028882.14	ENSMUST00000105919.2	1090	7	8339	-799	8339	-99	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATTTGTACATTTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	132562095	132554338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_132555515_132556683_132556749_132557935_132558081_132560207_132560429_132561947
ONT_simulated_read_12028303	chr2	-	401	5	ISM	ENSMUSG00000027422.16	ENSMUST00000016072.12	5177	24	54403	6770	54403	-6770	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGAGTGTGGAAGGCCAAGG	NA	NA	NA	NA	NA	NA	NA	NA	143798780	143796084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_143796129_143796654_143796745_143796876_143796958_143797033_143797127_143798687
ONT_simulated_read_12028901	chr18	+	553	5	ISM	ENSMUSG00000024483.20	ENST00000297183.10	7604	33	77964	14189	77857	-14189	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCCCATAGAGCCTCCGA	NA	NA	NA	NA	NA	NA	NA	NA	36771600	36777323	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313
ONT_simulated_read_12031508	chr12	-	1353	1	ISM	ENSMUSG00000020659.17	ENSMUST00000064240.14	3937	6	12044	1330	12044	742	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAATAGTAAGGACAACCAG	NA	NA	NA	NA	NA	NA	NA	NA	31537510	31536157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_31536200_31537500
ONT_simulated_read_12033362	chr8	-	1994	1	ISM	ENSMUSG00000013150.16	ENSMUST00000013294.16	4352	3	41026	1791	40992	1772	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAGATTTATTATATAT	NA	NA	NA	NA	NA	NA	NA	NA	106444270	106442276	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_106442300_106444300
ONT_simulated_read_12033735	chr13	+	860	1	FSM	ENSMUSG00000113626.2	ENSMUST00000220769.2	664	1	0	-196	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTACGAAGGAATTGGATTG	NA	NA	NA	NA	NA	NA	NA	NA	62008629	62009489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_62008600_62009500
ONT_simulated_read_12034685	chr3	-	740	1	ISM	ENSMUSG00000028005.14	ENSMUST00000029635.14	3223	14	41430	510	40817	-471	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGATGGGGGCTGCAT	NA	NA	NA	NA	NA	NA	NA	NA	81940562	81939822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_81939800_81940600
ONT_simulated_read_12037892	chr17	-	389	2	ISM	ENSMUSG00000024045.7	ENSMUST00000002699.7	3731	14	3867	12859	3867	-12859	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACGACTGTCGGGACCCA	NA	NA	NA	NA	NA	NA	NA	NA	32536292	32535504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32535642_32536040
ONT_simulated_read_12038510	chr5	-	669	1	ISM	ENSMUSG00000029640.18	ENSMUST00000085614.6	4327	9	57226	2303	57226	-2303	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTATGTACATGGAGGGA	NA	NA	NA	NA	NA	NA	NA	NA	146674590	146673921	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_146673900_146674600
ONT_simulated_read_1204231	chr5	-	570	3	ISM	ENSMUSG00000035505.15	ENSMUST00000118816.6	1307	6	4935	116	4935	-116	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	191	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAACATAGGATGCCT	NA	NA	NA	NA	NA	NA	NA	NA	90366896	90362698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_90363035_90365375_90365484_90366770
ONT_simulated_read_120436	chr10	-	667	5	ISM	ENSMUSG00000020181.19	ENSMUST00000238286.2	7316	29	118819	20262	118819	-19407	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTAGCAAACAAACTTGC	NA	NA	NA	NA	NA	NA	NA	NA	109550263	109539267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_109539402_109540630_109540800_109541432_109541529_109543720_109543819_109550093
ONT_simulated_read_12045793	chr7	-	484	1	ISM	ENSMUSG00000099216.2	ENSMUST00000184356.2	1167	3	1486	152	1486	-152	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGATACCATGTTTACCAA	NA	NA	NA	NA	NA	NA	NA	NA	14065996	14065512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_14065500_14066000
ONT_simulated_read_12048417	chr14	-	894	1	ISM	ENSMUSG00000021910.16	ENSMUST00000168206.8	4990	17	19551	156	19551	-156	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCCTCCTCAAGTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	30893936	30893042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_30893000_30893900
ONT_simulated_read_12050180	chr10	-	396	4	ISM	ENSMUSG00000040441.13	ENST00000665594.1	1790	14	3840	659	3840	-659	internal_fragment	FALSE	canonical	NA	NA	NA	NA	340	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCAGAGATGGGCACCAA	NA	NA	NA	NA	NA	NA	NA	NA	127012554	127010151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_127010260_127010674_127010771_127010853_127010932_127012440
ONT_simulated_read_12056580	chr4	-	297	2	ISM	ENSMUSG00000028840.11	ENSMUST00000030644.8	1994	3	519	1394	519	-1394	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGTTCTGCCCAAAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	133972384	133971993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_133972242_133972335
ONT_simulated_read_12058281	chr4	-	303	2	ISM	ENSMUSG00000059713.13	ENST00000425530.3	654	4	6869	0	6869	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGGACTGTGCACTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	135145834	135143750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_135143910_135145690
ONT_simulated_read_12058720	chr4	-	594	1	ISM	ENSMUSG00000039911.14	ENSMUST00000038562.9	3092	3	56702	1465	8948	219	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACGAGTGCCAGCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	149982798	149982204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_149982200_149982800
ONT_simulated_read_12060003	chr3	-	477	3	ISM	ENSMUSG00000028063.16	ENST00000361308.9	2477	13	20302	117	9899	-46	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGCCTGAAGCCAAAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	88390720	88389293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_88389408_88389652_88389920_88390624
ONT_simulated_read_12060461	chr8	-	892	5	ISM	ENSMUSG00000040028.11	ENSMUST00000098950.6	5743	6	163	10099	163	-7138	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCCAGGTTCCTCCGAG	NA	NA	NA	NA	NA	NA	NA	NA	4375250	4345480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_4345562_4351684_4351839_4354926_4355031_4361598_4361787_4374885
ONT_simulated_read_12060775	chr14	+	999	1	FSM	ENSMUSG00000068165.4	ENSMUST00000089275.4	628	1	0	-371	0	371	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	66282528	66283527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_66282500_66283500
ONT_simulated_read_12064885	chr11	-	1229	1	ISM	ENSMUSG00000040548.17	ENST00000258991.7	4939	12	109199	343	75412	-326	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGACAAAGCTAAGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	106394527	106393298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106393300_106394500
ONT_simulated_read_12066959	chr12	+	1493	11	ISM	ENSMUSG00000021090.17	ENST00000445360.5	4297	30	26752	10858	26752	2388	internal_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTGCATTTGGGATACAA	NA	NA	NA	NA	NA	NA	NA	NA	72522847	72546401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_72522937_72523976_72524169_72525429_72525556_72528201_72528337_72529667_72529846_72532944_72533166_72533768_72533892_72542338_72542470_72543822_72543932_72544560_72544701_72546352
ONT_simulated_read_12067284	chr7	-	237	1	ISM	ENSMUSG00000063808.15	ENSMUST00000079693.12	3065	20	41668	0	41668	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTTCTTGATTTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	34976197	34975960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_34976000_34976200
ONT_simulated_read_12067546	chr5	-	1169	1	NIC	ENSMUSG00000097673.2	novel	1954	3	NA	NA	34772	-54	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGACAGTGAACTGAACCT	NA	NA	NA	NA	NA	NA	NA	NA	28225685	28224516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_28224500_28225700
ONT_simulated_read_12067783	chr4	+	2305	10	FSM	ENSMUSG00000029064.16	ENST00000615252.4	3018	10	32	681	0	-678	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTCAGTCCTTAGATGT	NA	NA	NA	NA	NA	NA	NA	NA	155575826	155643046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_155576038_155600087_155600137_155611869_155611967_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
ONT_simulated_read_1207256	chr4	-	357	1	ISM	ENSMUSG00000028433.15	ENSMUST00000108068.8	4380	29	79911	564	79902	-561	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCCTTCAGATCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	41195233	41194876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_41194900_41195200
ONT_simulated_read_12073258	chr17	+	469	5	ISM	ENSMUSG00000046711.17	ENSMUST00000231780.2	619	6	-7	2155	0	-1065	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTGCTTGTTGTGTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	27775605	27780486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_27775686_27775925_27776041_27778506_27778645_27779901_27779986_27780434
ONT_simulated_read_12073865	chr4	+	281	1	NIC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	0	-27017	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGCGGGGCCTGGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	155648156	155648437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_+_155648200_155648400
ONT_simulated_read_12074424	chr8	-	173	1	NIC	ENSMUSG00000033633.16	novel	1973	12	NA	NA	11005	0	mono-exon	FALSE	NA	NA	NA	NA	NA	328	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACGCTGGGTAAGATAGT	NA	NA	NA	NA	NA	NA	NA	NA	111796560	111796387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_111796400_111796600
ONT_simulated_read_12077316	chr7	+	786	7	ISM	ENSMUSG00000063160.13	ENSMUST00000079258.7	2760	10	81	8073	-65	-7696	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCCGTGAGGGCTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	26958230	26973493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_26958387_26961592_26961678_26964300_26964441_26965979_26966055_26966151_26966227_26968203_26968345_26973379
ONT_simulated_read_12086114	chr11	-	1099	9	FSM	ENSMUSG00000020534.15	ENST00000354098.7	1242	9	41	102	41	-102	multi-exon	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGGCAGGAGATGAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	60695195	60680073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088
ONT_simulated_read_12089036	chr7	+	1662	12	ISM	ENSMUSG00000045467.14	ENST00000438251.3	2461	14	105	1640	105	-1640	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATCGTGGAAGAGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	79897135	79908426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_79897300_79898042_79898084_79899867_79899987_79902248_79902380_79902788_79902946_79903326_79903471_79903829_79903916_79904218_79904451_79905059_79905245_79906592_79906779_79907924_79908106_79908390
ONT_simulated_read_12095325	chr2	+	1598	2	ISM	ENSMUSG00000033955.14	ENSMUST00000048400.4	4799	8	0	10892	0	-10892	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGAGCGAAGTGCCTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	84888502	84892500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_84889832_84892231
ONT_simulated_read_12096402	chr9	-	252	1	ISM	ENSMUSG00000032786.17	ENSMUST00000112524.9	3089	11	13554	470	13554	2	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGTCCTGGTTAGTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	106111375	106111123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_106111100_106111400
ONT_simulated_read_12096843	chr14	+	444	3	ISM	ENSMUSG00000022070.8	ENSMUST00000022656.8	2726	12	103	24473	103	-24473	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCGGCAGGCTTCCTACCT	NA	NA	NA	NA	NA	NA	NA	NA	99283915	99287503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_99284117_99284736_99284905_99287428
ONT_simulated_read_12099666	chr2	+	219	2	ISM	ENSMUSG00000050373.14	ENSMUST00000172577.8	1825	3	803	1176	777	-611	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGCAGAAACCATTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	164628713	164633796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_164628769_164633632
ONT_simulated_read_1210220	chr11	-	390	5	ISM	ENSMUSG00000020806.16	ENST00000591885.5	2482	17	6230	1140	6230	-1140	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGAAGCTGGCCGGCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	116491975	116490986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_116491041_116491223_116491325_116491435_116491512_116491720_116491816_116491911
ONT_simulated_read_12102376	chr3	-	208	1	FSM	ENSMUSG00000042165.9	ENSMUST00000192538.2	1392	1	784	400	784	-366	mono-exon	FALSE	NA	NA	NA	NA	NA	216	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGACTGCAGATGAGAGCC	NA	NA	NA	NA	NA	NA	NA	NA	92335946	92335738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_92335700_92335900
ONT_simulated_read_12102896	chr10	+	844	5	ISM	ENSMUSG00000003345.17	ENSMUST00000079773.14	2348	11	11557	2015	4739	-1611	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGGCGCTGGGACACATG	NA	NA	NA	NA	NA	NA	NA	NA	80470228	80474560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_80470476_80473721_80473763_80473843_80474144_80474227_80474463_80474539
ONT_simulated_read_12105511	chr7	-	491	1	ISM	ENSMUSG00000000031.17	ENSMUST00000136359.8	2286	5	225	1899	225	-1899	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGGTCAAACAGGGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	142131655	142131164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_142131200_142131700
ONT_simulated_read_12105618	chr14	-	486	2	ISM	ENSMUSG00000021951.8	ENSMUST00000022518.8	836	5	20947	57	20947	-57	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCTGGGACTCCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	57788079	57787111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_57787337_57787818
ONT_simulated_read_12110358	chr5	-	2001	1	ISM	ENSMUSG00000029213.12	ENSMUST00000013693.11	3895	5	8311	1303	8311	-1303	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCATTTGTGTGCATATCA	NA	NA	NA	NA	NA	NA	NA	NA	72317221	72315220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_72315200_72317200
ONT_simulated_read_12112573	chr6	+	454	2	FSM	ENSMUSG00000038065.14	ENST00000409688.1	735	2	53	228	48	-228	multi-exon	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCACCTTGGTGGGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	54658786	54676288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_54658917_54675964
ONT_simulated_read_12116845	chr6	-	292	1	FSM	ENSMUSG00000059159.7	ENSMUST00000118230.2	213	1	0	-79	0	79	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAACATCAAGCCGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	52323927	52323635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_52323600_52323900
ONT_simulated_read_12117698	chr7	-	494	1	FSM	ENSMUSG00000050085.6	ENSMUST00000058744.5	1105	1	83	528	83	-528	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTATTCTGATTAAGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	103289360	103288866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_103288900_103289400
ONT_simulated_read_12119899	chr9	+	390	3	ISM	ENSMUSG00000041624.11	ENSMUST00000115733.3	2243	8	110	312042	90	-312042	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCGGTATATTAACTATA	NA	NA	NA	NA	NA	NA	NA	NA	3532887	3582694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_3533100_3579517_3579580_3582578
ONT_simulated_read_12120885	chr7	-	1169	9	ISM	ENSMUSG00000054808.16	ENST00000424234.7	2915	21	63541	215	63541	-215	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCCCCGACCAGGCCGAG	NA	NA	NA	NA	NA	NA	NA	NA	28598153	28593778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044
ONT_simulated_read_12121183	chr5	-	258	2	ISM	ENSMUSG00000025337.11	ENST00000423945.5	404	3	4339	2	4339	-2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGAAAGGCAGGGGTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	130279855	130275245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_130275303_130279654
ONT_simulated_read_12124645	chr6	-	884	8	ISM	ENSMUSG00000035245.13	ENST00000540955.5	1331	12	16	6820	16	-6820	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGTGCTTTGGTATGAAC	NA	NA	NA	NA	NA	NA	NA	NA	97122415	97095841	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_97095911_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900_97121002_97122221
ONT_simulated_read_12128056	chr16	-	2532	8	ISM	ENSMUSG00000003166.21	ENSMUST00000117082.2	2987	10	32072	122	32072	-122	3prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTGCAGGTGATAA	NA	NA	NA	NA	NA	NA	NA	NA	17677385	17659295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676444_17677267
ONT_simulated_read_12128769	chr9	-	445	1	FSM	ENSMUSG00000053128.16	ENSMUST00000056328.6	2724	1	830	1449	360	-1442	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGATTGTGTTGCACCC	NA	NA	NA	NA	NA	NA	NA	NA	44023971	44023526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_44023500_44024000
ONT_simulated_read_12130520	chr5	-	450	4	ISM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	14028	1773	13885	-1617	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGGGGCGTGGGGGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	134654316	134650347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_134650503_134650802_134650941_134653294_134653355_134654219
ONT_simulated_read_12133689	chr13	+	2392	8	NNC	ENSMUSG00000021483.9	novel	4118	8	NA	NA	-18	1342	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTCATATTTTTAAAATG	NA	NA	NA	NA	NA	NA	NA	NA	64580391	64588136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr13_+_64580485_64580790_64580905_64583931_64584121_64584306_64584418_64584579_64584643_64585202_64585327_64585690_64585847_64586594
ONT_simulated_read_12134351	chr6	-	723	1	ISM	ENSMUSG00000059878.13	ENSMUST00000079749.6	3187	2	3945	316	3647	-316	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAGGGTTTCTCTGTATA	NA	NA	NA	NA	NA	NA	NA	NA	116602015	116601292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_116601300_116602000
ONT_simulated_read_12134489	chr17	+	1861	12	ISM	ENSMUSG00000042644.10	ENSMUST00000049308.9	8990	58	48873	8359	48873	-8359	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCGGCCCATCCTGCGCT	NA	NA	NA	NA	NA	NA	NA	NA	27325150	27332838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_27325381_27326203_27326456_27326583_27326710_27326790_27326917_27329453_27329575_27329804_27329996_27330171_27330321_27330437_27330547_27330638_27330730_27330830_27331001_27332464_27332640_27332717
ONT_simulated_read_12135153	chr5	+	244	3	ISM	ENSMUSG00000052139.19	ENSMUST00000114515.9	1497	13	3815	299236	3795	-299128	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCTGATTTCATCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	31859188	31942955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31859322_31888310_31888388_31942921
ONT_simulated_read_12137968	chr5	+	1110	8	ISM	ENSMUSG00000056310.15	ENSMUST00000044204.12	4698	9	3311	3564	1895	-3564	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGGACAAAGGTATTTATT	NA	NA	NA	NA	NA	NA	NA	NA	130287770	130310663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621
ONT_simulated_read_12138165	chr5	-	859	1	ISM	ENSMUSG00000066900.12	ENSMUST00000086471.12	2425	12	22981	479	22981	278	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCCCATAGCTGCGGTG	NA	NA	NA	NA	NA	NA	NA	NA	117231082	117230223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_117230200_117231100
ONT_simulated_read_12138881	chr17	-	1427	1	ISM	ENSMUSG00000024091.10	ENSMUST00000024897.10	3369	6	32708	1094	32708	-1094	mono-exon	FALSE	NA	NA	NA	NA	NA	1717	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAAATTAGTATTACTTT	NA	NA	NA	NA	NA	NA	NA	NA	65887842	65886415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_65886400_65887800
ONT_simulated_read_1214241	chr11	-	1510	1	ISM	ENSMUSG00000017286.16	ENSMUST00000169701.8	4203	9	29759	1824	29555	-1824	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTTGTCTGATTACTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	76104730	76103220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_76103200_76104700
ONT_simulated_read_12142512	chr17	-	579	7	ISM	ENSMUSG00000024120.13	ENST00000682104.1	2022	19	3632	4445	3632	-4445	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACCATTTCATTTTTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	85077128	85060832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_85060940_85061968_85062027_85063685_85063714_85069379_85069447_85071879_85071974_85074420_85074540_85077022
ONT_simulated_read_12143262	chr7	+	1150	11	ISM	ENSMUSG00000061079.15	ENST00000396597.7	1954	15	36	8260	0	-8260	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAAACGGTTTACAGAATA	NA	NA	NA	NA	NA	NA	NA	NA	109660928	109685354	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_109660983_109668690_109668810_109670578_109670663_109671325_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319
ONT_simulated_read_12144698	chr1	-	205	1	FSM	ENSMUSG00000084817.4	ENSMUST00000153604.2	423	1	0	218	0	-218	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGGACCAGGGAACCTAC	NA	NA	NA	NA	NA	NA	NA	NA	45896914	45896709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_45896700_45896900
ONT_simulated_read_12149595	chr2	-	636	5	ISM	ENSMUSG00000039128.14	ENSMUST00000043864.9	1827	13	40130	371	39888	-371	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	159	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGCCTACTGTGATGG	NA	NA	NA	NA	NA	NA	NA	NA	5809845	5799475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721
ONT_simulated_read_12150135	chr9	-	663	3	ISM	ENSMUSG00000001366.15	ENSMUST00000085311.13	2155	13	22690	139	22638	-136	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTCAGGGAGCACACTGG	NA	NA	NA	NA	NA	NA	NA	NA	77993248	77988919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_77989371_77991784_77991937_77993188
ONT_simulated_read_12150495	chr3	-	1143	2	ISM	ENSMUSG00000001017.16	ENSMUST00000107343.8	3118	4	6169	195	3186	-186	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGAAACTGGTAACAAACT	NA	NA	NA	NA	NA	NA	NA	NA	90410588	90406457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_90407415_90410402
ONT_simulated_read_12150837	chr2	-	182	1	ISM	ENSMUSG00000026988.16	ENSMUST00000028368.14	2072	11	29636	403	25583	-403	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGCAAATGATTCAAAATG	NA	NA	NA	NA	NA	NA	NA	NA	59683292	59683110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_59683100_59683300
ONT_simulated_read_12151900	chr15	-	702	1	NIC	ENSMUSG00000039828.8	novel	1130	4	NA	NA	6075	-188	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGAGCACCTGGGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	8122600	8121898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_8121900_8122600
ONT_simulated_read_12152543	chr19	-	723	7	ISM	ENSMUSG00000024906.11	ENSMUST00000124334.8	2067	16	2795	858	2795	-858	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGCTCACTCCTCACCT	NA	NA	NA	NA	NA	NA	NA	NA	5535635	5533717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515
ONT_simulated_read_12152789	chr12	+	827	5	ISM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	42273	1355	42264	-1355	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCATCTGTGTCCTTGGTC	NA	NA	NA	NA	NA	NA	NA	NA	83721298	83728542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
ONT_simulated_read_12155556	chr10	+	1515	10	ISM	ENSMUSG00000019978.17	ENST00000525193.5	2070	14	24	28800	24	-28800	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGCAGGCACAGACCAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	25317508	25360178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105
ONT_simulated_read_12156277	chr8	-	231	1	ISM	ENSMUSG00000031887.14	ENSMUST00000034359.10	1689	5	5337	756	5337	-756	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGTCTAGCAGAGGATCT	NA	NA	NA	NA	NA	NA	NA	NA	105985904	105985673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_105985700_105985900
ONT_simulated_read_12157736	chr12	+	465	4	ISM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	311	9827	311	-9827	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGATGACAAGTACAAGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	78908903	78923957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865
ONT_simulated_read_12158916	chr4	+	477	3	ISM	ENSMUSG00000028671.17	ENSMUST00000102540.2	1537	10	30	2077	30	-2077	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCAGCTTCTAGAGGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	135692505	135693412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_135692768_135692876_135692993_135693313
ONT_simulated_read_12159232	chr2	-	1823	15	ISM	ENSMUSG00000027620.17	ENST00000528062.7	2369	16	928	264	349	-264	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGCAGACAGGTCACGT	NA	NA	NA	NA	NA	NA	NA	NA	156021151	155989718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156014747_156014943_156019255_156019306_156021096
ONT_simulated_read_12159964	chr16	-	1139	5	ISM	ENSMUSG00000022498.17	ENSMUST00000118362.8	4248	8	17716	2421	17716	-2421	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAACATCTACCTTTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	10934759	10905803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_10906434_10909449_10909651_10911679_10911793_10922429_10922524_10934658
ONT_simulated_read_12162019	chr17	-	244	1	NIC	ENSMUSG00000023980.8	novel	1263	8	NA	NA	7754	-3302	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCATGATGGGCTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	47804612	47804368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_47804400_47804600
ONT_simulated_read_12163857	chr2	+	2717	8	ISM	ENSMUSG00000033943.16	ENSMUST00000046717.13	11982	25	77	44130	77	-44128	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCAATCTACCATTTCC	NA	NA	NA	NA	NA	NA	NA	NA	119727785	119754100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_119727828_119733086_119734215_119746911_119747855_119750106_119750186_119750292_119750389_119751846_119751979_119752218_119752324_119753908
ONT_simulated_read_12169028	chr11	-	1346	1	NIC	ENSMUSG00000020745.16	novel	5803	11	NA	NA	46115	-2440	mono-exon	FALSE	NA	NA	NA	NA	NA	213	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGAAAGTCACTTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	74568569	74567223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_74567200_74568600
ONT_simulated_read_12175292	chr5	+	308	3	ISM	ENSMUSG00000033623.14	ENSMUST00000112597.8	2169	8	81	16719	43	-1404	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCAGAGGAGGTGAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	108609178	108620371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_108609318_108619937_108619978_108620242
ONT_simulated_read_12176542	chr4	+	239	1	ISM	ENSMUSG00000028419.6	ENSMUST00000030128.6	1519	8	0	16658	0	-16658	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACCTAGCTTGACGGACT	NA	NA	NA	NA	NA	NA	NA	NA	40948406	40948645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_40948400_40948600
ONT_simulated_read_12176613	chr17	+	274	2	ISM	ENSMUSG00000037649.11	ENSMUST00000236322.2	1108	5	26	1818	0	-1796	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGGGCTCAGGGACAGG	NA	NA	NA	NA	NA	NA	NA	NA	34354627	34356256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34354733_34356087
ONT_simulated_read_12179061	chr19	-	590	1	NIC	ENSMUSG00000025204.11	novel	2142	5	NA	NA	5191	608	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGTAAGGCATTTCAAGC	NA	NA	NA	NA	NA	NA	NA	NA	44538660	44538070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_44538100_44538700
ONT_simulated_read_1218	chr4	+	879	4	ISM	ENSMUSG00000053510.13	ENSMUST00000065977.11	4311	31	115	42749	0	-42133	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGATAATGCCTCAACTGA	NA	NA	NA	NA	NA	NA	NA	NA	108857966	108876225	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_108858362_108870706_108871038_108875035_108875118_108876154
ONT_simulated_read_12180452	chr11	+	500	3	ISM	ENSMUSG00000020389.20	ENSMUST00000063321.13	2008	13	-16	22615	0	-16310	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGAGTAAGCGGCTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	51895051	51902081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_51895245_51895736_51895920_51901957
ONT_simulated_read_12181173	chr2	-	1289	9	ISM	ENSMUSG00000034848.18	ENSMUST00000125446.3	4061	28	33802	6987	33802	-6987	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTATATCCAGTCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	66053134	66021973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_66022128_66028011_66028208_66031466_66031629_66031816_66031968_66037795_66037878_66038997_66039109_66040335_66040525_66047528_66047636_66052997
ONT_simulated_read_1218258	chrX	+	728	8	ISM	ENSMUSG00000025525.13	ENSMUST00000026599.10	1359	9	14	8240	14	250	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTGCCAAAAGAACTTGC	NA	NA	NA	NA	NA	NA	NA	NA	111221044	111274212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_111221134_111243497_111243603_111255934_111256055_111259497_111259553_111260996_111261096_111263857_111263950_111273853_111273968_111274158
ONT_simulated_read_12183303	chr4	-	3054	4	ISM	ENSMUSG00000028980.15	ENSMUST00000084117.13	4571	5	6749	1418	6749	-1418	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGGCTGTCGGGCATCT	NA	NA	NA	NA	NA	NA	NA	NA	150080838	150065349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_150067379_150068359_150068630_150078925_150079044_150080201
ONT_simulated_read_12187843	chr19	-	1476	7	ISM	ENSMUSG00000039901.11	ENSMUST00000045396.9	3676	26	76824	669	76824	-669	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTTTACATTCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	45910103	45806471	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_45807418_45808712_45808830_45834546_45834626_45874390_45874467_45879646_45879774_45880504_45880588_45910055
ONT_simulated_read_12188717	chr7	+	661	1	ISM	ENSMUSG00000001918.18	ENSMUST00000108496.9	2764	9	28	16246	28	-16246	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCGGGTGCGCCGCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	16515292	16515953	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_16515300_16516000
ONT_simulated_read_12190347	chr16	+	510	3	FSM	ENSMUSG00000022865.15	ENST00000400165.5	561	3	51	0	51	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCCCTAATCTCAGTCGA	NA	NA	NA	NA	NA	NA	NA	NA	78122094	78133263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_78122212_78125841_78126047_78133075
ONT_simulated_read_12192787	chr10	+	677	6	ISM	ENSMUSG00000019794.14	ENSMUST00000019929.13	1774	11	17659	2330	17659	-2330	internal_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTAAGGCGTCGTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	7619422	7636583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7635588_7636498
ONT_simulated_read_1219605	chr5	-	1564	1	ISM	ENSMUSG00000015882.19	ENSMUST00000045586.13	5708	7	155652	3219	154588	50	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAACTGAAATGAACAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	45859305	45857741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_45857700_45859300
ONT_simulated_read_12198850	chr15	-	1369	9	ISM	ENSMUSG00000036606.18	ENSMUST00000060808.10	6394	36	9575	3139	9575	-3139	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAAGTGTACCGTACTCA	NA	NA	NA	NA	NA	NA	NA	NA	89045316	89042890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_89042987_89043161_89043309_89043429_89043497_89043663_89043846_89043975_89044206_89044363_89044465_89044570_89044711_89044809_89044987_89045087
ONT_simulated_read_12199430	chr2	-	1025	7	ISM	ENSMUSG00000033396.14	ENST00000558319.5	6260	32	24848	23413	24778	-23413	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGAAGGTGGCTTTAACA	NA	NA	NA	NA	NA	NA	NA	NA	121924025	121913990	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_121914043_121915375_121915522_121917343_121917451_121918613_121918818_121922637_121922849_121923445_121923622_121923896
ONT_simulated_read_1220097	chr4	-	810	1	ISM	ENSMUSG00000028484.17	ENSMUST00000030207.15	3251	16	29380	590	29374	-590	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACTAAGAAAGTCACTCAT	NA	NA	NA	NA	NA	NA	NA	NA	83375316	83374506	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_83374500_83375300
ONT_simulated_read_12200984	chr1	-	1740	12	ISM	ENSMUSG00000005501.15	ENST00000678225.1	3682	30	1094	33481	7	-32078	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAATTTAACAGAAACGTG	NA	NA	NA	NA	NA	NA	NA	NA	87935164	87909731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_87909903_87911475_87911558_87913623_87913922_87916606_87916715_87917783_87917880_87921895_87922025_87923432_87923577_87925534_87925682_87927461_87927627_87930130_87930245_87931968_87932037_87934946
ONT_simulated_read_12201588	chr2	-	679	5	ISM	ENSMUSG00000026853.16	ENST00000681325.1	1710	11	23	5285	23	-5205	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAAAGAGCCTGTTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	30303236	30297794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_30297893_30298067_30298234_30298752_30298807_30299968_30300088_30302994
ONT_simulated_read_12202	chr9	+	507	4	ISM	ENSMUSG00000033590.9	ENST00000261839.12	5218	40	23716	41001	23716	-41001	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGACCTGATCGAGGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	75163144	75170350	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_75163220_75165240_75165507_75169489_75169572_75170266
ONT_simulated_read_12202094	chr3	-	1073	8	ISM	ENSMUSG00000028017.8	ENST00000509793.5	2910	19	3102	26847	3102	-26847	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGGGAAGCATCATCGAAT	NA	NA	NA	NA	NA	NA	NA	NA	129530589	129506679	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_129506708_129510278_129510428_129511572_129511710_129512705_129512832_129513879_129514003_129516918_129517042_129529450_129529654_129530405
ONT_simulated_read_12206347	chr4	+	867	6	ISM	ENSMUSG00000006215.13	ENST00000375733.6	2741	16	20163	738	20163	-738	internal_fragment	TRUE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCACTGTGGACGACATG	NA	NA	NA	NA	NA	NA	NA	NA	141192128	141193796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658
ONT_simulated_read_12206756	chr16	+	1511	15	ISM	ENSMUSG00000022682.9	ENSMUST00000023363.8	3582	18	0	5829	0	2265	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCGCATTGTGTTGAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	13598576	13626874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845
ONT_simulated_read_1220746	chr2	-	942	7	ISM	ENSMUSG00000033096.8	ENSMUST00000046399.7	2235	9	14181	965	14181	-965	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATACCTGTACCTGGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	150436306	150425964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_150426109_150427682_150427876_150428300_150428436_150428911_150429087_150430822_150430940_150431952_150432046_150436221
ONT_simulated_read_12208630	chr2	-	2717	1	FSM	ENSMUSG00000084516.3	ENSMUST00000122567.3	80	1	-1372	-1265	-1372	1265	mono-exon	FALSE	NA	NA	NA	NA	NA	234	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAGAAATATATATAACACA	NA	NA	NA	NA	NA	NA	NA	NA	104260657	104257940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_104257900_104260700
ONT_simulated_read_12210433	chr11	-	1005	1	ISM	ENSMUSG00000034993.8	ENSMUST00000040430.8	2766	6	5983	498	5983	-498	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGTCTCTGTCAGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	101351073	101350068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_101350100_101351100
ONT_simulated_read_12213864	chr3	+	2581	20	ISM	ENSMUSG00000028059.17	ENSMUST00000029694.14	4300	22	32	4059	13	-2870	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGGCTCGGGGAAGAGCG	NA	NA	NA	NA	NA	NA	NA	NA	88528444	88551300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_88528629_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096
ONT_simulated_read_12215802	chr13	-	709	1	ISM	ENSMUSG00000025878.17	ENSMUST00000026997.12	2931	15	71583	124	48742	-124	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGACCTGTGGCTATATAG	NA	NA	NA	NA	NA	NA	NA	NA	55176525	55175816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_55175800_55176500
ONT_simulated_read_12216590	chr7	-	1179	11	ISM	ENSMUSG00000052997.16	ENST00000439527.6	2496	17	6346	3844	6346	-3844	internal_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGACGACTTCCTCCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	33861051	33843964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961
ONT_simulated_read_12219296	chr9	+	597	6	ISM	ENSMUSG00000032245.13	ENSMUST00000034776.13	2142	7	58	2872	-27	-62	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTACTTCAGTGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	62746124	62756416	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_62746237_62751851_62751967_62753235_62753335_62754247_62754437_62754866_62754923_62756390
ONT_simulated_read_12220134	chr9	-	2664	17	ISM	ENSMUSG00000057969.16	ENSMUST00000102529.10	2875	18	246	81	246	-81	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGTGAACAGATTAGACCG	NA	NA	NA	NA	NA	NA	NA	NA	107482355	107475634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167
ONT_simulated_read_12227331	chr7	+	834	6	ISM	ENSMUSG00000058454.16	ENSMUST00000124340.8	2556	9	612	5111	-9	-4358	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTCAATGTCTTGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	143383974	143397036	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_143384003_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850
ONT_simulated_read_12229192	chr8	-	516	2	ISM	ENSMUSG00000056204.9	ENSMUST00000070173.9	4883	5	8352	4040	8265	-297	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGCGCCCAGAGGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	71104036	71103124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71103436_71103831
ONT_simulated_read_12230001	chr3	-	411	5	ISM	ENSMUSG00000033439.13	ENST00000370139.1	400	6	-85	252	37	-252	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTCTGCTAAAGTCGCAG	NA	NA	NA	NA	NA	NA	NA	NA	116388450	116383381	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
ONT_simulated_read_12233212	chr1	-	2193	11	FSM	ENSMUSG00000026098.14	ENST00000447232.6	2305	11	4	108	4	-108	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCGGAAAAGAAATTAAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	53321227	53228569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_53228658_53231258_53231420_53234086_53234218_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099
ONT_simulated_read_1223450	chr11	-	1307	11	ISM	ENSMUSG00000020289.16	ENSMUST00000020530.12	2865	13	4629	2044	4469	-1056	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGACAGAGAACCTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	32213078	32184006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_32184097_32184731_32184922_32186787_32186918_32187299_32187407_32189796_32189954_32191797_32191936_32198144_32198227_32200124_32200279_32203874_32203950_32205438_32205569_32213024
ONT_simulated_read_1223677	chr18	+	887	6	ISM	ENSMUSG00000000420.16	ENSMUST00000178605.2	3796	12	13489	15141	13489	-15141	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGGAGGGACAGGGCAGAT	NA	NA	NA	NA	NA	NA	NA	NA	24379142	24404726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_24379282_24387574_24387742_24397381_24397590_24400584_24400756_24402504_24402623_24404642
ONT_simulated_read_12238359	chr11	+	326	3	ISM	ENSMUSG00000020300.15	ENST00000520867.5	2599	8	1373	11116	1049	-11063	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGGAGAGAGTGGAACGAT	NA	NA	NA	NA	NA	NA	NA	NA	31823274	31870514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_31823413_31839857_31839940_31870408
ONT_simulated_read_1224467	chr11	-	688	2	ISM	ENSMUSG00000044066.15	ENSMUST00000109596.8	2171	4	7213	1945	7213	-1944	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGCTCCAGGGGTCAGCAC	NA	NA	NA	NA	NA	NA	NA	NA	20192205	20190330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_20190699_20191885
ONT_simulated_read_12245694	chr6	+	730	5	ISM	ENSMUSG00000031865.17	ENST00000409567.7	4022	28	-9	10658	-9	-10658	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAGCAGCAGTGAGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	83156594	83166135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_83156888_83159505_83159752_83160040_83160120_83160280_83160316_83166058
ONT_simulated_read_1225203	chr19	-	577	3	ISM	ENSMUSG00000063904.5	ENSMUST00000025851.4	2683	18	14353	317	14313	-317	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGAGGGAGGGGCAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	4963962	4957573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4957826_4959873_4960037_4963800
ONT_simulated_read_12253315	chrX	-	659	4	ISM	ENSMUSG00000056537.12	ENSMUST00000121153.8	7439	5	1957	6551	1957	-6551	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGCTGAAGCAGTAACAGAA	NA	NA	NA	NA	NA	NA	NA	NA	103022933	103007319	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_103007650_103008856_103008941_103010096_103010287_103022878
ONT_simulated_read_1225656	chr10	-	671	1	NIC	ENSMUSG00000046822.15	novel	3796	4	NA	NA	2211	-2490	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTGCTGAAGGTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	80867535	80866864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_80866900_80867500
ONT_simulated_read_12256715	chr8	-	1202	1	ISM	ENSMUSG00000110386.2	ENSMUST00000209823.2	1885	2	5216	0	5216	0	mono-exon	FALSE	NA	NA	NA	NA	NA	851	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCGGGGGTCTTTCAGTA	NA	NA	NA	NA	NA	NA	NA	NA	85853702	85852500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85852500_85853700
ONT_simulated_read_12259387	chr19	-	1518	1	NIC	ENSMUSG00000024816.13	novel	4504	11	NA	NA	22367	1354	mono-exon	FALSE	NA	NA	NA	NA	NA	207	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATATGGAATAGCCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	5902771	5901253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_5901300_5902800
ONT_simulated_read_12260119	chr11	+	615	4	ISM	ENSMUSG00000020897.13	ENSMUST00000021277.6	1950	8	38	3368	38	-3368	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAGATTGAGAAGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	68936515	68939122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_68936835_68938610_68938714_68938797_68938868_68938999
ONT_simulated_read_12260349	chr2	-	529	3	ISM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	6219	13318	5772	-13318	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCCCATGAAGCCCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	5011383	5008852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_5008987_5009756_5009923_5011154
ONT_simulated_read_12263622	chr10	+	1166	8	ISM	ENSMUSG00000034902.18	ENSMUST00000105327.10	2551	18	25	7385	0	-7385	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGACAGATGACACGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	81128838	81146703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_81128987_81140517_81140550_81141019_81141113_81141532_81141664_81142141_81142260_81143317_81143471_81144781_81145082_81146512
ONT_simulated_read_12265087	chr7	+	667	1	ISM	ENSMUSG00000030649.19	ENSMUST00000144207.9	3103	6	4185	581	2807	-371	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCCACCAGCCGCATC	NA	NA	NA	NA	NA	NA	NA	NA	101549808	101550475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_101549800_101550500
ONT_simulated_read_12266456	chr16	+	718	5	ISM	ENSMUSG00000005982.15	ENSMUST00000186375.8	2350	7	-15	3892	9	-936	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCTTTACTGCTGGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	3702531	3718742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506
ONT_simulated_read_12268788	chr2	+	1035	1	FSM	ENSMUSG00000084013.2	ENSMUST00000118388.2	846	1	0	-189	0	189	mono-exon	FALSE	NA	NA	NA	NA	NA	286	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCAGCTGGGTGGTTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	170126954	170127989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_170127000_170128000
ONT_simulated_read_12269304	chr2	-	1048	5	ISM	ENSMUSG00000027177.15	ENSMUST00000111124.8	4125	16	59868	276	59761	-202	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	372	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAACTTACAATATCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	104264167	104260401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_104260677_104261071_104261200_104261496_104261733_104263512_104263654_104263899
ONT_simulated_read_12269648	chr7	-	1322	6	ISM	ENSMUSG00000007833.16	ENSMUST00000209963.2	3537	17	8967	686	8951	-686	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCCCAAGCCAGGGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	44795030	44791014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44791527_44792203_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899
ONT_simulated_read_12270708	chrX	-	435	1	ISM	ENSMUSG00000061273.4	ENSMUST00000059899.3	4234	4	8766	3357	8766	1	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCGGATTTTTGTGATTA	NA	NA	NA	NA	NA	NA	NA	NA	55634663	55634228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_55634200_55634700
ONT_simulated_read_1227173	chr7	-	636	5	ISM	ENSMUSG00000036845.13	ENSMUST00000043975.11	998	9	2461	0	2461	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATCTCAAGTGCATTTA	NA	NA	NA	NA	NA	NA	NA	NA	30256610	30254865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524
ONT_simulated_read_12272541	chr11	+	1098	10	NIC	ENSMUSG00000000056.8	novel	4395	11	NA	NA	0	-219	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACAGACAGAGGACGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	121128078	121143529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_121128178_121129244_121129344_121135419_121135553_121135761_121135897_121136163_121136283_121137751_121137882_121139954_121140019_121141118_121141257_121141585_121141744_121143506
ONT_simulated_read_12273670	chr7	-	414	4	ISM	ENSMUSG00000025102.15	ENSMUST00000026092.9	887	5	0	922	0	-922	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTCTACAACTCCAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	81439226	81432851	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_81432887_81435824_81435953_81438197_81438325_81439102
ONT_simulated_read_12274030	chr2	-	1177	7	ISM	ENSMUSG00000056486.19	ENST00000409156.7	1411	11	41541	-10	-19495	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	490	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTCTATAGCACCGCTC	NA	NA	NA	NA	NA	NA	NA	NA	73510245	73443231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_73443541_73445005_73445112_73448264_73448403_73454458_73454537_73455220_73455395_73462089_73462175_73509958
ONT_simulated_read_12276436	chr5	-	433	5	ISM	ENSMUSG00000029012.12	ENSMUST00000030872.12	2103	14	26752	676	26752	-676	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCAAAGCCATATGGACAC	NA	NA	NA	NA	NA	NA	NA	NA	22728621	22692162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513
ONT_simulated_read_12278407	chr14	+	647	7	ISM	ENSMUSG00000022204.10	ENSMUST00000022815.10	1200	11	5968	120	5968	-120	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACACGTGTACTTTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	55258878	55261474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
ONT_simulated_read_12280954	chr10	-	862	1	ISM	ENSMUSG00000037370.14	ENSMUST00000105520.8	6777	25	70206	3177	70039	589	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACACACATGTACACACAT	NA	NA	NA	NA	NA	NA	NA	NA	24517850	24516988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_24517000_24517800
ONT_simulated_read_12282956	chr9	+	773	2	ISM	ENSMUSG00000032024.11	ENSMUST00000034522.8	4154	7	95153	2330	95153	-2330	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGCAAATTTATTGGATTA	NA	NA	NA	NA	NA	NA	NA	NA	40692460	40694285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_40692551_40693602
ONT_simulated_read_12284737	chr16	+	728	5	ISM	ENSMUSG00000052133.17	ENSMUST00000050625.15	4350	22	117014	3609	117014	-3601	internal_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGACGCTGCGGAGTACCA	NA	NA	NA	NA	NA	NA	NA	NA	35478954	35481022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_35478992_35480019_35480164_35480292_35480441_35480527_35480754_35480849
ONT_simulated_read_12285253	chr9	+	622	1	FSM	ENSMUSG00000074516.7	ENSMUST00000213318.2	480	1	0	-142	0	142	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTCCAGTCTCAGTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	7751725	7752347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_7751700_7752300
ONT_simulated_read_12286500	chr1	-	783	3	ISM	ENSMUSG00000026442.15	ENST00000513543.6	4106	26	89199	19	89197	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTGCATCTTCTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	132504128	132497781	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_132498390_132501507_132501578_132504023
ONT_simulated_read_12287428	chr5	+	682	1	ISM	ENSMUSG00000023106.16	ENSMUST00000023869.15	2339	8	20243	736	20243	-736	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGGATACTATATATTTGA	NA	NA	NA	NA	NA	NA	NA	NA	124065480	124066162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_124065500_124066200
ONT_simulated_read_12287869	chr4	+	883	7	ISM	ENSMUSG00000006215.13	ENST00000375733.6	2741	16	44	2955	44	-2955	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACGGACAAGAGGAAGAGGG	NA	NA	NA	NA	NA	NA	NA	NA	141172009	141191579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547
ONT_simulated_read_12288025	chr4	+	605	5	ISM	ENSMUSG00000066037.15	ENST00000606561.5	1832	9	21	10645	0	-10645	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAAAAAAATGCATTTCGA	NA	NA	NA	NA	NA	NA	NA	NA	136038335	136056812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_136038401_136043671_136043791_136044394_136044503_136054546_136054724_136056676
ONT_simulated_read_12288950	chr14	-	1657	9	ISM	ENSMUSG00000033166.12	ENSMUST00000042471.11	5150	21	13843	1695	13843	-1695	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAGTGTTGCAGGGCTA	NA	NA	NA	NA	NA	NA	NA	NA	99323363	99314336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_99314902_99315697_99315821_99316563_99316723_99316823_99316993_99317100_99317316_99318661_99318819_99320085_99320173_99321462_99321591_99323309
ONT_simulated_read_12290209	chr6	-	992	8	ISM	ENSMUSG00000001157.14	ENSMUST00000001185.14	2949	14	19143	967	19000	-967	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTTGCTTTAATTTAGTA	NA	NA	NA	NA	NA	NA	NA	NA	86691222	86669716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_86670034_86674430_86674519_86677493_86677640_86681480_86681557_86684384_86684455_86687496_86687635_86688570_86688662_86691156
ONT_simulated_read_12290408	chrX	-	428	4	ISM	ENSMUSG00000031255.15	ENST00000276141.10	3523	16	14336	4073	14336	-4073	internal_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTCTGAGTCCCCACTAC	NA	NA	NA	NA	NA	NA	NA	NA	132848648	132841224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_132841281_132841990_132842091_132844308_132844418_132848485
ONT_simulated_read_12290888	chrX	-	543	1	ISM	ENSMUSG00000031232.18	ENSMUST00000238718.2	4524	10	40907	2366	40788	28	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTAGCATGTTTTCAAG	NA	NA	NA	NA	NA	NA	NA	NA	105014598	105014055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_105014100_105014600
ONT_simulated_read_12290963	chr2	-	953	1	NIC	ENSMUSG00000049252.18	novel	15286	89	NA	NA	30261	-589	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTTCCAAGTATGTT	NA	NA	NA	NA	NA	NA	NA	NA	40487087	40486134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_40486100_40487100
ONT_simulated_read_12296218	chr2	-	122	1	ISM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	3644	387	3644	-387	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCTGTCACCAAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	132091590	132091468	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_132091500_132091600
ONT_simulated_read_12297378	chr3	-	202	3	ISM	ENSMUSG00000040562.13	ENSMUST00000066530.7	854	8	1227	2079	1227	-2079	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATGATGTCCTTGATCA	NA	NA	NA	NA	NA	NA	NA	NA	107892449	107891341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_107891363_107891444_107891541_107892364
ONT_simulated_read_12297722	chr3	-	1540	1	ISM	ENSMUSG00000027864.10	ENSMUST00000102694.4	5902	9	66783	1724	66783	-1724	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTACTGAGGCTCACCAC	NA	NA	NA	NA	NA	NA	NA	NA	100950811	100949271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_100949300_100950800
ONT_simulated_read_12297869	chr19	+	423	5	ISM	ENSMUSG00000024935.12	ENST00000262352.8	3320	12	15498	11216	15498	-11216	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGACTGGGAAATATTCC	NA	NA	NA	NA	NA	NA	NA	NA	28871920	28880136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_28871969_28873483_28873527_28874906_28875003_28878841_28879027_28880085
ONT_simulated_read_12298183	chr17	+	373	3	ISM	ENSMUSG00000024044.20	ENSMUST00000225977.2	3188	20	0	79050	0	-77448	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAGCAGCAAACTCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	69463839	69517269	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_69463906_69514853_69515072_69517180
ONT_simulated_read_12299371	chr1	-	1371	13	ISM	ENSMUSG00000026198.16	ENST00000295750.5	2749	18	4714	27	4714	-27	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGAAAGCATCGTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	75152257	75148401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_75148633_75148757_75148827_75148909_75149005_75149198_75149312_75149434_75149610_75150188_75150294_75150505_75150564_75150782_75150869_75150969_75151034_75151121_75151199_75151345_75151472_75151616_75151683_75152151
ONT_simulated_read_12299492	chr5	-	586	1	ISM	ENSMUSG00000034724.19	ENSMUST00000155901.8	8564	12	84604	6468	84161	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAAACT	NA	NA	NA	NA	NA	NA	NA	NA	96225245	96224659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_96224700_96225200
ONT_simulated_read_12300443	chr2	-	1755	7	ISM	ENSMUSG00000026872.19	ENSMUST00000177302.8	4020	9	159	8797	159	-8756	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAGAACCACAGCATATCC	NA	NA	NA	NA	NA	NA	NA	NA	45000141	44887209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_44888008_44888895_44889005_44891611_44891827_44892527_44892717_44907408_44907481_44912858_44913117_45000027
ONT_simulated_read_12300465	chr11	+	637	5	NIC	ENSMUSG00000020372.16	novel	1447	8	NA	NA	0	-1874	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACTTTAGATGGTGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	48691186	48695027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_48691400_48692489_48692662_48694230_48694327_48694684_48694796_48694982
ONT_simulated_read_1230053	chr6	-	785	2	ISM	ENSMUSG00000029918.10	ENSMUST00000031978.9	1107	3	5414	160	468	-160	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	908	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTATTGGAGTTTAGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	39782508	39778897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_39779479_39782304
ONT_simulated_read_12302603	chr9	-	699	1	ISM	ENSMUSG00000056031.14	ENSMUST00000069896.7	1486	4	22286	60	22286	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGCTGCTATTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	85703052	85702353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_85702400_85703100
ONT_simulated_read_1230271	chr18	+	389	1	FSM	ENSMUSG00000117832.2	ENSMUST00000237858.2	178	1	0	-211	0	211	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACATAATACAATTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	44954199	44954588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_44954200_44954600
ONT_simulated_read_12303530	chr3	-	958	7	ISM	ENSMUSG00000027957.14	ENSMUST00000120120.8	1791	9	17597	516	-1	-163	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACGATCCCAAACCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	116488283	116467317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_116467368_116468819_116468954_116471511_116471631_116474753_116474926_116480710_116480834_116480919_116481075_116488078
ONT_simulated_read_12304779	chr12	+	490	4	ISM	ENSMUSG00000036333.12	ENST00000473731.5	5271	28	34727	17370	34727	-17370	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTACACGCCAAGGTATT	NA	NA	NA	NA	NA	NA	NA	NA	25066984	25090471	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_25067052_25086452_25086632_25088322_25088550_25090454
ONT_simulated_read_12306090	chr11	-	422	1	ISM	ENSMUSG00000020917.18	ENSMUST00000107389.8	4426	29	50671	555	46269	-550	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTTTTTAATTAGTT	NA	NA	NA	NA	NA	NA	NA	NA	100368155	100367733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100367700_100368200
ONT_simulated_read_12306856	chr13	-	726	1	NIC	ENSMUSG00000038462.4	novel	1363	2	NA	NA	4020	-309	mono-exon	FALSE	NA	NA	NA	NA	NA	1357	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGTATTGGCAAACATTA	NA	NA	NA	NA	NA	NA	NA	NA	30725325	30724599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_30724600_30725300
ONT_simulated_read_12307266	chr13	-	746	7	ISM	ENSMUSG00000021549.15	ENSMUST00000109552.3	4563	25	44713	13892	44713	-13892	internal_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAGCAAAAACTCATGCA	NA	NA	NA	NA	NA	NA	NA	NA	85392435	85376790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_85376885_85377723_85377802_85378506_85378595_85381707_85381865_85382478_85382600_85386257_85386337_85392306
ONT_simulated_read_12307322	chr16	+	706	4	ISM	ENSMUSG00000022503.11	ENSMUST00000023146.5	2121	11	9288	771	9288	-771	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCACACTGGGGTCTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	10239099	10241521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_10239202_10239440_10239544_10240685_10240770_10241104
ONT_simulated_read_12307968	chr6	-	499	5	ISM	ENSMUSG00000004631.16	ENST00000428696.7	1346	11	55491	0	55491	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCTGCAGCCGTGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	4691604	4674577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_4674633_4677162_4677198_4678066_4678111_4689578_4689768_4691428
ONT_simulated_read_12308291	chr11	+	1351	11	ISM	ENSMUSG00000062312.6	ENST00000445658.6	3164	21	54	3695	23	-3695	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTGGAATCCTAATCAAAC	NA	NA	NA	NA	NA	NA	NA	NA	98303318	98323799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_98303562_98315565_98315686_98315922_98316050_98317728_98317803_98317885_98317977_98318081_98318282_98318739_98318873_98318961_98319053_98319649_98319811_98322542_98322591_98323736
ONT_simulated_read_12310388	chr11	-	187	1	ISM	ENSMUSG00000041598.8	ENSMUST00000106616.2	3405	2	21690	2592	21690	-1027	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGGCTGGGGACGCCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	113620454	113620267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_113620300_113620500
ONT_simulated_read_12313376	chr6	-	1762	13	ISM	ENSMUSG00000038429.11	ENSMUST00000047510.10	3213	20	5167	2352	5118	-2333	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCATCTCCGAGTCTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	124801280	124794333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124794435_124794629_124794776_124794850_124794995_124795437_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094
ONT_simulated_read_12314444	chr1	+	1947	15	ISM	ENSMUSG00000041642.19	ENST00000422435.2	5352	35	28954	0	15762	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGCCCTGCCTGGCCCTAC	NA	NA	NA	NA	NA	NA	NA	NA	136088095	136101423	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_136088144_136089143_136089310_136089466_136089519_136089701_136089760_136090524_136090731_136090810_136090889_136092755_136092870_136094899_136094939_136096924_136097062_136097726_136097908_136098879_136099045_136099325_136099444_136099896_136100068_136100540_136100741_136101209
ONT_simulated_read_12315045	chr14	-	1117	12	ISM	ENSMUSG00000021820.19	ENST00000423381.6	3847	23	33872	1734	33783	18	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCATACCATGATGCGTT	NA	NA	NA	NA	NA	NA	NA	NA	20810251	20786676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20791445_20791560_20792772_20792822_20794671_20794717_20795859_20795929_20797886_20797920_20805726_20805771_20807733_20807797_20810211
ONT_simulated_read_12316253	chr9	+	534	6	ISM	ENSMUSG00000002031.14	ENSMUST00000118186.2	1317	11	7926	371	7926	-56	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCACCCAACTCTGCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	44695599	44701821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_44695758_44697590_44697713_44698134_44698202_44700863_44700925_44701187_44701274_44701781
ONT_simulated_read_1231739	chr13	-	1079	4	ISM	ENSMUSG00000021365.16	ENSMUST00000163623.3	4626	7	20229	6663	20229	-6663	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACTGTCTTTCTCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	41492494	41470058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_41470492_41471337_41471440_41471919_41472022_41492052
ONT_simulated_read_12317899	chr16	-	298	1	ISM	ENSMUSG00000090021.3	ENSMUST00000159889.3	2639	2	478	2055	478	-2055	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCATCAGCCGGACCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	22835310	22835012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_22835000_22835300
ONT_simulated_read_12319061	chr7	+	1668	11	NNC	ENSMUSG00000052301.15	novel	1660	11	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTTCCAAATAGAGGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	126447133	126451574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_126447205_126447744_126448035_126448391_126448472_126448653_126448729_126448833_126448944_126450105_126450233_126450311_126450372_126450454_126450619_126450708_126450791_126450880_126450978_126451062
ONT_simulated_read_12319737	chr12	+	1969	11	ISM	ENSMUSG00000021109.14	ENSMUST00000021530.8	4724	15	0	5793	0	-5793	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAGTGAATATTGCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	73954677	73988511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_73955099_73973330_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988461
ONT_simulated_read_12320565	chr2	-	1319	8	ISM	ENSMUSG00000033396.14	ENSMUST00000036450.8	7671	40	9949	39966	9885	-33389	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTCATCAACTTGAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	121938918	121923966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_121924025_121924938_121925011_121926070_121926248_121927736_121927913_121928581_121928738_121932126_121932260_121934388_121934535_121938517
ONT_simulated_read_12322373	chr1	+	1324	6	ISM	ENSMUSG00000034220.8	ENSMUST00000045970.8	4176	9	0	3506	0	-3506	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCAATCCCCACGGCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	92759366	92784995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_92759820_92781068_92781228_92782579_92782969_92783628_92783795_92784708_92784840_92784969
ONT_simulated_read_1232283	chr6	-	2183	2	ISM	ENSMUSG00000052962.4	ENSMUST00000065103.4	3721	4	6079	1235	6079	-1235	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTGGTGTTTTGATGGC	NA	NA	NA	NA	NA	NA	NA	NA	71794715	71791215	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_71793272_71794588
ONT_simulated_read_12324367	chr9	+	1341	5	FSM	ENSMUSG00000032583.8	ENST00000455683.6	1595	5	60	194	0	-194	multi-exon	FALSE	canonical	NA	NA	NA	NA	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCCATAAGCTGATGCG	NA	NA	NA	NA	NA	NA	NA	NA	107765380	107780126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_107765602_107775870_107776011_107778393_107779160_107779814_107779963_107780060
ONT_simulated_read_12327957	chr6	-	574	3	ISM	ENSMUSG00000048668.17	ENSMUST00000112152.8	2015	4	653	971	653	-606	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTCCCCAGAGCTGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	128339122	128334933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_128335157_128336068_128336318_128339020
ONT_simulated_read_12329885	chr15	-	113	1	ISM	ENSMUSG00000022986.6	ENSMUST00000042957.6	3266	9	8820	1627	8763	-565	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCACCAGCAGCCGGGG	NA	NA	NA	NA	NA	NA	NA	NA	101473519	101473406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_101473400_101473500
ONT_simulated_read_12331148	chr3	+	830	5	ISM	ENSMUSG00000004897.17	ENSMUST00000005017.15	2245	6	0	1626	0	-1619	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGGAGGAGGACAAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	87813627	87821813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_87814022_87820397_87820475_87820619_87820759_87821358_87821545_87821779
ONT_simulated_read_12332570	chr11	-	332	2	ISM	ENSMUSG00000001552.15	ENSMUST00000107403.2	2386	13	14118	10855	14118	-10855	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGTGCGGACTATGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	100274457	100273976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100274072_100274220
ONT_simulated_read_12333741	chr16	-	738	1	NIC	ENSMUSG00000002846.10	novel	1573	7	NA	NA	23579	0	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTGTCTGGATCGCCT	NA	NA	NA	NA	NA	NA	NA	NA	38319446	38318708	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_38318700_38319400
ONT_simulated_read_1234374	chr2	-	445	2	ISM	ENSMUSG00000027193.13	ENST00000420461.6	2014	13	19730	246	19730	-246	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATATCCTCACTATCCAG	NA	NA	NA	NA	NA	NA	NA	NA	94248738	94243819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_94244127_94248600
ONT_simulated_read_12343767	chr5	-	720	5	ISM	ENSMUSG00000029512.12	ENSMUST00000031490.11	5213	28	18379	4948	18335	-3342	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCCTGACCTCTCCGAG	NA	NA	NA	NA	NA	NA	NA	NA	110939584	110937301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_110937402_110938077_110938347_110938715_110938803_110938917_110939064_110939466
ONT_simulated_read_12344636	chr10	-	1123	2	ISM	ENSMUSG00000075266.6	ENSMUST00000099985.6	1532	3	1980	210	1912	-210	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTATTGAAGAGCATTTT	NA	NA	NA	NA	NA	NA	NA	NA	30074576	30072214	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_30073223_30074461
ONT_simulated_read_12345088	chr3	-	381	4	ISM	ENSMUSG00000039795.15	ENSMUST00000037839.12	1610	8	5311	922	2548	-161	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCTGCCATTGGATCAC	NA	NA	NA	NA	NA	NA	NA	NA	10411066	10405934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994
ONT_simulated_read_123467	chr16	-	757	1	ISM	ENSMUSG00000068196.6	ENSMUST00000089332.5	5108	4	125952	3771	3856	-1561	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCCGAGAGGGGAAAAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	57449148	57448391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_57448400_57449100
ONT_simulated_read_12347951	chr15	+	350	1	NIC	ENSMUSG00000003970.10	novel	851	6	NA	NA	0	-1863	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGAGGGCACCGGCGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	76788301	76788651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_+_76788300_76788700
ONT_simulated_read_12348208	chr15	-	3487	31	ISM	ENSMUSG00000022607.19	ENSMUST00000110036.11	4417	32	28492	702	28429	-466	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACATTAAGAAGCTTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	73266548	73077652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73266496
ONT_simulated_read_12348914	chr17	-	583	2	ISM	ENSMUSG00000040097.17	ENSMUST00000045517.10	2798	6	1213	5517	1213	-5511	internal_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTGCCACTCACCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	23981536	23979904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_23980091_23981139
ONT_simulated_read_12350098	chr8	-	1842	5	ISM	ENSMUSG00000033596.6	ENSMUST00000038739.5	4443	13	20226	1093	20226	-1093	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTTATATTTGTCTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	112006628	111998668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_111999796_112000442_112000655_112002851_112003067_112004826_112005004_112006517
ONT_simulated_read_12350122	chr3	+	745	6	ISM	ENSMUSG00000042626.14	ENSMUST00000039110.12	3250	13	0	5771	0	-4855	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTTGGGGACCAGAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	89325749	89331551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89326017_89329484_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496
ONT_simulated_read_12350745	chr15	-	4754	10	ISM	ENSMUSG00000033565.19	ENSMUST00000166610.8	6573	13	40153	1165	39897	323	3prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTACCGAAACTGTAGCC	NA	NA	NA	NA	NA	NA	NA	NA	76997859	76964355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982285_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804
ONT_simulated_read_1235204	chr11	+	3246	15	ISM	ENSMUSG00000059474.14	ENSMUST00000107854.9	5232	16	18934	1794	0	-130	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTCCTCAGAGTGGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	93795978	93836017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
ONT_simulated_read_12355788	chr7	-	493	1	ISM	ENSMUSG00000030602.14	ENSMUST00000108283.8	2899	10	38418	456	8470	-449	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAGAGAGAGTGTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	28259192	28258699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28258700_28259200
ONT_simulated_read_1235742	chr8	-	117	1	ISM	ENSMUSG00000035559.10	ENSMUST00000038626.10	980	5	1948	233	1948	-233	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGACCAGCAGTCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	71211644	71211527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71211500_71211600
ONT_simulated_read_12360817	chr4	-	1333	8	ISM	ENSMUSG00000066043.14	ENSMUST00000084249.11	2349	13	27118	-60	27118	60	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCACTTCTCACACAGC	NA	NA	NA	NA	NA	NA	NA	NA	132098404	132085499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836
ONT_simulated_read_12361593	chr11	+	417	5	ISM	ENSMUSG00000017428.17	ENSMUST00000173938.8	1626	13	27745	2027	27743	-2027	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACAGAATCTGATCCGGGT	NA	NA	NA	NA	NA	NA	NA	NA	80347193	80360708	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627
ONT_simulated_read_12361909	chr8	-	278	1	ISM	ENSMUSG00000078143.4	ENSMUST00000171173.2	1159	2	5755	698	5732	-698	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATGGATGATTGTAAATG	NA	NA	NA	NA	NA	NA	NA	NA	110589332	110589054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_110589100_110589300
ONT_simulated_read_12364272	chr2	-	780	1	ISM	ENSMUSG00000015087.15	ENSMUST00000058137.9	3230	15	24546	178	24546	-178	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCACTGGGTAAGCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	25473987	25473207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25473200_25474000
ONT_simulated_read_12364485	chr6	-	525	4	ISM	ENSMUSG00000051169.15	ENST00000433535.6	927	6	716	199	716	-5	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	195	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTCTCAACAGTAGACT	NA	NA	NA	NA	NA	NA	NA	NA	113394187	113392508	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113392684_113393267_113393408_113393749_113393874_113394101
ONT_simulated_read_12365898	chr6	-	2374	5	ISM	ENSMUSG00000029826.15	ENSMUST00000114900.8	4944	13	37872	234	37872	-234	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATACTACAGTGGGAATCA	NA	NA	NA	NA	NA	NA	NA	NA	38293336	38282454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_38284392_38288112_38288247_38288524_38288656_38289328_38289420_38293255
ONT_simulated_read_12365971	chr5	+	514	5	ISM	ENSMUSG00000035297.15	ENST00000503682.5	1660	10	12	14440	12	-14440	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	161	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGTCCTTACTTCAGAACG	NA	NA	NA	NA	NA	NA	NA	NA	100666337	100681206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107
ONT_simulated_read_12367300	chrX	+	583	3	ISM	ENSMUSG00000044150.13	ENSMUST00000057180.13	2513	11	0	40255	0	-40255	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGTAGAGGTAGAGGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	158315714	158335135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_158315832_158331234_158331312_158334746
ONT_simulated_read_12368087	chr3	-	774	1	ISM	ENSMUSG00000038170.16	ENST00000369349.7	4558	23	94134	505	37649	-503	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACACTGATGTTATGAC	NA	NA	NA	NA	NA	NA	NA	NA	97637676	97636902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_97636900_97637700
ONT_simulated_read_12368805	chr10	+	450	1	ISM	ENSMUSG00000020087.6	ENSMUST00000020284.5	2286	4	0	6810	0	-6532	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACCAGCGCAGCTGCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	61531292	61531742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_61531300_61531700
ONT_simulated_read_12376937	chr2	-	306	1	ISM	ENSMUSG00000037703.15	ENST00000645462.1	3969	6	2599	2365	2599	-2301	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCGGCTGCCGCTTCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	130477368	130477062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_130477100_130477400
ONT_simulated_read_1237842	chr13	-	245	1	ISM	ENSMUSG00000044734.17	ENSMUST00000076352.8	1918	7	7989	860	7989	-860	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACAGGAGGCATTGCTACA	NA	NA	NA	NA	NA	NA	NA	NA	33027179	33026934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_33026900_33027200
ONT_simulated_read_12380254	chr10	-	626	5	ISM	ENSMUSG00000019806.14	ENSMUST00000162610.8	1554	6	39607	540	39449	75	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAACTTCAAAGGAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	13705117	13523337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_13523451_13529329_13529494_13566267_13566384_13677591_13677694_13704986
ONT_simulated_read_12380949	chr6	-	793	1	NIC	ENSMUSG00000034203.9	novel	3472	3	NA	NA	8232	-2350	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCCAGGCTCCAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	91442296	91441503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_91441500_91442300
ONT_simulated_read_1238158	chr15	-	600	6	ISM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	4630	2905	4630	-2905	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCATTTGTGGAGGACG	NA	NA	NA	NA	NA	NA	NA	NA	77850383	77846102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337
ONT_simulated_read_12383591	chrX	-	284	3	ISM	ENSMUSG00000071708.12	ENSMUST00000112529.8	3717	11	26421	17411	26421	-17411	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAAAGATGTACTGATTCT	NA	NA	NA	NA	NA	NA	NA	NA	156248862	156244261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_156244327_156244956_156245133_156248819
ONT_simulated_read_12385131	chr11	-	292	1	ISM	ENSMUSG00000017188.4	ENSMUST00000017332.4	886	2	662	193	491	177	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCAGCCCTTTTTATTTC	NA	NA	NA	NA	NA	NA	NA	NA	101169278	101168986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_101169000_101169300
ONT_simulated_read_12386334	chr4	-	1545	10	ISM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	6665	2533	6665	-2533	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCACTATAGTTTGATGC	NA	NA	NA	NA	NA	NA	NA	NA	129222498	129203425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380
ONT_simulated_read_12390561	chr6	+	880	7	ISM	ENSMUSG00000005893.15	ENSMUST00000113463.8	2368	15	47363	9317	47363	-9317	internal_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAGTGAATCTTTGAACA	NA	NA	NA	NA	NA	NA	NA	NA	92116776	92135369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_92116872_92126584_92126786_92129295_92129399_92131315_92131496_92133552_92133701_92134386_92134481_92135310
ONT_simulated_read_12391969	chr7	+	388	2	ISM	ENSMUSG00000109881.2	ENSMUST00000210611.2	519	3	0	213	0	-213	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATAACGCTTGTGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	138492692	138496191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_138493035_138496145
ONT_simulated_read_12392117	chr13	-	216	2	ISM	ENSMUSG00000006179.10	ENSMUST00000150547.3	1159	5	1190	691	1190	-316	internal_fragment	FALSE	canonical	NA	NA	NA	NA	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTCACCTGCATCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	22189392	22187411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_22187496_22189260
ONT_simulated_read_12392171	chr18	+	1617	1	ISM	ENSMUSG00000103332.2	ENSMUST00000193869.2	4689	4	0	171301	0	-171301	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTTAGCTGAAGATAGC	NA	NA	NA	NA	NA	NA	NA	NA	37802005	37803622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_37802000_37803600
ONT_simulated_read_12393011	chr9	-	134	1	NIC	ENSMUSG00000032355.17	novel	2921	11	NA	NA	74860	4	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCTGCATAAGAAAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	77072175	77072041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_77072000_77072200
ONT_simulated_read_12398293	chr7	-	238	1	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	2696	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	139679620	139679382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_139679400_139679600
ONT_simulated_read_12398549	chr5	-	775	3	ISM	ENSMUSG00000029556.13	ENST00000541395.5	2102	9	18096	-1	18087	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCACCTGACACAGGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	115090830	115088013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_115088245_115088752_115089104_115090637
ONT_simulated_read_12403365	chr10	-	637	8	ISM	ENSMUSG00000001120.16	ENST00000449640.5	1164	13	11077	861	11077	-861	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAAATCAATGAAATCCGA	NA	NA	NA	NA	NA	NA	NA	NA	76625673	76599194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_76599226_76603697_76603751_76606093_76606154_76606794_76606871_76617665_76617708_76620904_76621049_76624224_76624354_76625571
ONT_simulated_read_12404657	chr8	-	1389	1	ISM	ENSMUSG00000036180.16	ENSMUST00000177851.9	5007	12	86300	1469	64338	-75	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGTCACTTCCCAGGGT	NA	NA	NA	NA	NA	NA	NA	NA	70362583	70361194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70361200_70362600
ONT_simulated_read_12404721	chr3	-	1278	1	ISM	ENSMUSG00000046793.9	ENSMUST00000062028.8	3686	2	2964	2320	2964	-1969	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGCGTGGCTGCCATGCAA	NA	NA	NA	NA	NA	NA	NA	NA	108059234	108057956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_108058000_108059200
ONT_simulated_read_12407128	chr11	-	535	2	ISM	ENSMUSG00000078812.11	ENSMUST00000108610.8	1409	6	3128	162	802	149	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTAGGGGTGGTGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	69808328	69807707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69808168_69808253
ONT_simulated_read_12408938	chr13	-	1974	4	ISM	ENSMUSG00000046876.17	ENSMUST00000180110.9	3901	8	169339	10478	169319	-10478	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCACCACCGCCCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	45949114	45720401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_45722057_45851296_45851422_45888590_45888655_45948984
ONT_simulated_read_12412225	chr2	-	944	1	ISM	ENSMUSG00000027490.18	ENSMUST00000103145.11	2732	7	8965	577	8793	-350	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAAGTCCCTGTTCTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	154402847	154401903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_154401900_154402800
ONT_simulated_read_12416640	chr16	-	510	5	ISM	ENSMUSG00000013539.15	ENST00000420290.6	572	6	19482	24	4	-24	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCACACTACAGAGTTAG	NA	NA	NA	NA	NA	NA	NA	NA	18142315	18119315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_18119417_18120549_18120655_18130502_18130623_18134509_18134599_18142220
ONT_simulated_read_12417899	chr7	+	1948	11	ISM	ENSMUSG00000051048.18	ENSMUST00000057023.12	2361	13	8290	0	8290	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTTCTAACAGCGACTAT	NA	NA	NA	NA	NA	NA	NA	NA	99943016	99968906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_99943178_99947104_99947255_99949843_99949896_99954706_99954871_99955073_99955251_99959993_99960059_99962412_99962573_99963814_99963878_99966248_99966318_99967188_99967286_99968116
ONT_simulated_read_12419516	chr9	+	675	1	FSM	ENSMUSG00000096160.3	ENSMUST00000179930.3	840	1	0	165	0	-165	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGAGAAGGAGAAACGGAA	NA	NA	NA	NA	NA	NA	NA	NA	70759857	70760532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_70759900_70760500
ONT_simulated_read_12423179	chr14	-	743	1	ISM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	35606	654	35606	-654	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGAGCTGGGCTGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	52399267	52398524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52398500_52399300
ONT_simulated_read_12425090	chr6	-	382	1	ISM	ENSMUSG00000073002.10	ENSMUST00000206154.2	2619	2	2960	0	2960	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	72346158	72345776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_72345800_72346200
ONT_simulated_read_12426426	chr10	-	170	1	ISM	ENSMUSG00000047090.14	ENSMUST00000051011.14	2335	5	3154	1011	1302	-206	mono-exon	FALSE	NA	NA	NA	NA	NA	422	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGGATAGGGCCTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	128637085	128636915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128636900_128637100
ONT_simulated_read_12427560	chr4	+	210	3	ISM	ENSMUSG00000028797.21	ENSMUST00000102591.10	1437	5	15	6313	4	-5367	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAGAGTGGATCCCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	129494487	129496008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_129494525_129494775_129494928_129495987
ONT_simulated_read_12432089	chr15	-	1793	11	ISM	ENSMUSG00000033565.19	ENSMUST00000166610.8	6573	13	36747	4270	36491	228	3prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCAACTCCTCTGTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	77001265	76967460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982285_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120
ONT_simulated_read_12433551	chr17	-	1312	5	ISM	ENSMUSG00000024006.18	ENSMUST00000232836.2	2778	13	24755	80	24755	-80	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCTTCACGGCTGTAGA	NA	NA	NA	NA	NA	NA	NA	NA	29194910	29190771	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792
ONT_simulated_read_12434432	chr11	-	357	1	ISM	ENSMUSG00000020482.5	ENSMUST00000020776.5	3372	5	10690	2254	10690	-2254	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGAATTCAACTTTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	5481497	5481140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_5481100_5481500
ONT_simulated_read_12442010	chr13	-	1772	9	ISM	ENSMUSG00000021546.19	ENSMUST00000225674.2	2704	16	6421	458	2335	253	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	559	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTTGCCACTACTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	58543534	58539510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387
ONT_simulated_read_12442931	chr8	-	693	1	NIC	ENSMUSG00000035671.7	novel	4625	14	NA	NA	24249	-1436	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCACGCCACTATGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	84939435	84938742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_84938700_84939400
ONT_simulated_read_12443544	chr11	+	511	3	FSM	ENSMUSG00000018239.10	ENST00000513848.5	492	3	-12	-7	0	7	multi-exon	FALSE	canonical	NA	NA	NA	NA	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGCTCTGTACACCGGGA	NA	NA	NA	NA	NA	NA	NA	NA	53215505	53223417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_53215569_53218095_53218255_53223128
ONT_simulated_read_12444737	chr2	+	248	3	ISM	ENSMUSG00000027287.15	ENST00000397138.5	422	5	1092	-1	1092	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	264	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGCTGTACTTCTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	120416721	120429823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_120416758_120427123_120427269_120429756
ONT_simulated_read_12446067	chr11	-	488	5	ISM	ENSMUSG00000040712.17	ENST00000572543.5	4469	22	1780	13474	1780	-13474	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAGTGGTCACGTGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	70576977	70573765	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_70573874_70574104_70574192_70574715_70574852_70574930_70574999_70576888
ONT_simulated_read_1244881	chr5	-	977	7	ISM	ENSMUSG00000028959.15	ENSMUST00000115041.2	1399	9	1751	354	1737	-354	internal_fragment	FALSE	canonical	NA	NA	NA	NA	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCTCGCGGGCCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	24648455	24646394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274
ONT_simulated_read_1245005	chr5	+	1110	8	ISM	ENSMUSG00000023353.15	ENST00000463381.5	2530	15	3375	791	3375	-791	internal_fragment	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACAGCTGCTCATCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	24684750	24706244	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_24684788_24688338_24688432_24692786_24692892_24697955_24698125_24704655_24704811_24704912_24705004_24705120_24705344_24706007
ONT_simulated_read_12454688	chr3	-	490	1	ISM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	2060	3526	2060	-3526	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTACACGGCTTAGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	58431253	58430763	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_58430800_58431300
ONT_simulated_read_12454924	chr6	+	348	1	FSM	ENSMUSG00000093157.3	ENSMUST00000175416.3	87	1	0	-261	0	261	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGAGCTCTGAAGGTAG	NA	NA	NA	NA	NA	NA	NA	NA	125172754	125173102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_125172800_125173100
ONT_simulated_read_12455984	chr5	-	1168	4	ISM	ENSMUSG00000029598.13	ENSMUST00000031597.7	4208	12	16124	1777	16124	-1777	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTGTCTCCTTCCATC	NA	NA	NA	NA	NA	NA	NA	NA	120625566	120623123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_120623904_120624104_120624268_120624712_120624866_120625494
ONT_simulated_read_12460654	chr13	-	489	5	ISM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	566	7406	566	-7406	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAACTGCATTGACATCA	NA	NA	NA	NA	NA	NA	NA	NA	55510030	55499051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933
ONT_simulated_read_12460693	chr11	+	686	4	ISM	ENSMUSG00000034156.17	ENSMUST00000100644.10	7390	31	15544	8113	15544	-8109	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGATACTGGAGTTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	87666956	87668641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_87667165_87667250_87667491_87667872_87668062_87668592
ONT_simulated_read_12461630	chr8	-	915	4	ISM	ENSMUSG00000038542.15	ENSMUST00000164416.8	2860	14	25490	511	25490	-511	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTGCCAGAGGATGTGT	NA	NA	NA	NA	NA	NA	NA	NA	13129969	13127699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_13128290_13128547_13128672_13129637_13129764_13129894
ONT_simulated_read_124626	chr11	+	1759	5	ISM	ENSMUSG00000018809.3	ENSMUST00000044530.3	3517	11	62	14513	62	-14513	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGCCCAGGCAATAACAT	NA	NA	NA	NA	NA	NA	NA	NA	75239320	75282018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_75239578_75240494_75240641_75273075_75273221_75278236_75278327_75280897
ONT_simulated_read_12463227	chr8	+	568	4	ISM	ENSMUSG00000056820.8	ENSMUST00000212603.2	2169	5	-52	5783	0	-5783	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTCCAACGGAGCGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	125739735	125751377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245
ONT_simulated_read_12465765	chr13	-	994	9	ISM	ENSMUSG00000021711.18	ENSMUST00000144060.8	3538	12	11563	1982	11501	-177	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAATGTTAGACTTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	104303414	104280638	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366
ONT_simulated_read_12466945	chr11	-	557	6	ISM	ENSMUSG00000001441.14	ENST00000569955.2	1165	11	25657	0	25649	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATCTTTACGTTTTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	97132853	97125880	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97125942_97126890_97126996_97128919_97129085_97131754_97131870_97132629_97132664_97132776
ONT_simulated_read_12473198	chr8	-	322	2	ISM	ENSMUSG00000031796.8	ENSMUST00000213086.2	2544	4	11952	1783	11952	-1783	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCATACTGGGGGCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	96149520	96148662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_96148875_96149410
ONT_simulated_read_12476639	chr15	+	562	5	ISM	ENSMUSG00000022463.9	ENSMUST00000229336.2	4040	21	47768	1470	47768	-1470	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCGCCTGATGGCAGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	82079172	82087406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_82079226_82080360_82080494_82081818_82081988_82083835_82084022_82087385
ONT_simulated_read_12477436	chrX	+	631	5	ISM	ENSMUSG00000023092.17	ENSMUST00000023854.10	2356	7	0	3335	0	-2224	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGTTCGCCAAACATTGC	NA	NA	NA	NA	NA	NA	NA	NA	55777146	55835371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236
ONT_simulated_read_12481171	chr5	-	646	5	ISM	ENSMUSG00000002944.16	ENST00000433696.6	1309	10	14084	9935	14084	-9935	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTCAGAACCTATTGA	NA	NA	NA	NA	NA	NA	NA	NA	18019809	18000648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_18000696_18001993_18002182_18018010_18018103_18019110_18019291_18019670
ONT_simulated_read_12485695	chr7	+	1095	10	FSM	ENSMUSG00000030890.17	ENST00000528995.5	1483	10	25	363	25	-332	multi-exon	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCCATGTGTGTAAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	105386329	105391762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_105386445_105389383_105389550_105389719_105389816_105390166_105390251_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
ONT_simulated_read_12486098	chr3	+	615	6	FSM	ENSMUSG00000028124.16	ENST00000615724.1	1794	6	328	851	320	-180	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTCTTCAAGAAAGCATCC	NA	NA	NA	NA	NA	NA	NA	NA	122039636	122059904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_122039761_122052855_122052941_122055516_122055577_122056248_122056452_122058442_122058558_122059876
ONT_simulated_read_12486554	chr5	-	563	6	NNC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	592	-2921	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGTCATAGTTGGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	124716602	124711196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_124711217_124711748_124711818_124712656_124712774_124714860_124714978_124715078_124715216_124716499
ONT_simulated_read_12489087	chr11	-	1445	9	ISM	ENSMUSG00000010025.20	ENSMUST00000074127.14	3091	10	1890	1314	1890	-1314	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTTTGAGCCAAATCTCC	NA	NA	NA	NA	NA	NA	NA	NA	61156121	61136992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_61137148_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889
ONT_simulated_read_12498160	chr2	-	1161	3	ISM	ENSMUSG00000017144.9	ENSMUST00000017288.9	2828	5	11883	1175	11882	222	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTTACAAGATGCATAGAC	NA	NA	NA	NA	NA	NA	NA	NA	51027240	51021624	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_51022558_51024094_51024230_51027147
ONT_simulated_read_1249849	chr11	+	1758	6	ISM	ENSMUSG00000018809.3	ENSMUST00000044530.3	3517	11	39038	2505	39038	-2505	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCCCAGGCCCATGCTAC	NA	NA	NA	NA	NA	NA	NA	NA	75278296	75294026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_75278327_75280897_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934
ONT_simulated_read_12498879	chr18	+	865	3	ISM	ENSMUSG00000008301.12	ENSMUST00000008445.7	1942	5	51	7518	51	-6995	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGACCTGATAGCCCGAG	NA	NA	NA	NA	NA	NA	NA	NA	56705944	56713266	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_56706208_56708533_56709121_56713251
ONT_simulated_read_12499649	chr2	-	1320	1	NIC	ENSMUSG00000035877.18	novel	9563	3	NA	NA	-122	-9513	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAATGTACAGCACCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	160624300	160622980	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_160623000_160624300
ONT_simulated_read_12500773	chr5	+	377	1	FSM	ENSMUSG00000095159.3	ENSMUST00000179460.3	1336	1	0	959	0	-959	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGACTGCCTGCAGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	7229364	7229741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_7229400_7229700
ONT_simulated_read_12500913	chr5	-	1253	3	ISM	ENSMUSG00000029634.16	ENSMUST00000067837.10	2388	5	2912	983	2837	-983	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGCTTCCACAGAACTATC	NA	NA	NA	NA	NA	NA	NA	NA	146154874	146147749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_146148743_146152906_146153003_146154710
ONT_simulated_read_12501635	chr7	-	692	5	ISM	ENSMUSG00000030747.6	ENST00000376262.7	1359	7	17930	315	17930	-315	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCATGTACATGGAGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	98813886	98803843	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_98803908_98806183_98806387_98807359_98807535_98808039_98808245_98813841
ONT_simulated_read_12501988	chr3	+	1118	10	NNC	ENSMUSG00000028060.15	novel	1158	10	NA	NA	-13	-50	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCCACCTGTGCCAACACA	NA	NA	NA	NA	NA	NA	NA	NA	88593143	88607758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607671
ONT_simulated_read_12502676	chr14	-	118	1	ISM	ENSMUSG00000010376.16	ENSMUST00000010520.10	824	4	9744	0	9493	0	mono-exon	FALSE	NA	NA	NA	NA	NA	178	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGACTCTTTCTTCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	55899837	55899719	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55899700_55899800
ONT_simulated_read_12504500	chr8	+	900	9	ISM	ENSMUSG00000002342.18	ENST00000587583.6	1367	11	1	928	1	-928	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCAGTAACCCGGCCACA	NA	NA	NA	NA	NA	NA	NA	NA	70626952	70633862	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70627057_70629494_70629576_70629890_70629989_70630176_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798
ONT_simulated_read_12505765	chr5	-	830	7	ISM	ENSMUSG00000033434.16	ENSMUST00000077220.14	1617	10	1273	390	1273	-390	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACGAGCTGAAGGCCGCA	NA	NA	NA	NA	NA	NA	NA	NA	110254790	110252230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735
ONT_simulated_read_12507054	chr11	-	1387	1	ISM	ENSMUSG00000020810.6	ENSMUST00000021166.6	2331	4	7332	0	6977	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCCTCTGCTTGATCTT	NA	NA	NA	NA	NA	NA	NA	NA	116537807	116536420	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_116536400_116537800
ONT_simulated_read_12507589	chr10	-	2025	14	ISM	ENSMUSG00000020097.15	ENSMUST00000122259.8	4102	15	1315	1953	1315	-1953	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTTACTTAATCATTGTG	NA	NA	NA	NA	NA	NA	NA	NA	60982108	60936373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036
ONT_simulated_read_12508623	chr8	+	1110	9	ISM	ENSMUSG00000031930.12	ENSMUST00000212543.2	1996	15	0	3133	0	-3132	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCCATTGTCTGGATC	NA	NA	NA	NA	NA	NA	NA	NA	108271643	108280712	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_108271979_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600
ONT_simulated_read_12509205	chr4	-	1547	1	ISM	ENSMUSG00000049878.14	ENSMUST00000168615.8	6585	6	37528	4087	37528	-3577	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAACAGCGACAGCAATTC	NA	NA	NA	NA	NA	NA	NA	NA	121008203	121006656	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_121006700_121008200
ONT_simulated_read_1250990	chr2	-	722	7	ISM	ENSMUSG00000026792.17	ENST00000373324.8	2106	23	23116	-1	23116	1	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACAGCACCTACCAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	32826487	32816786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_32816914_32817996_32818143_32818663_32818746_32819585_32819718_32822102_32822202_32823826_32823923_32826447
ONT_simulated_read_1251879	chr8	+	3123	19	ISM	ENSMUSG00000025812.19	ENST00000350537.9	4703	25	0	185601	0	-6141	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCGAGAGAAGGAGAAGGATA	NA	NA	NA	NA	NA	NA	NA	NA	127790847	128153165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036_128136099_128137209_128137255_128142050_128142279_128153002
ONT_simulated_read_12519707	chr4	-	350	2	ISM	ENSMUSG00000028322.12	ENSMUST00000030003.10	1077	4	2837	181	2725	29	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGAGTTTCCTGGGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	45317792	45316793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_45317029_45317677
ONT_simulated_read_12519872	chr2	-	1470	1	ISM	ENSMUSG00000044033.17	ENSMUST00000049544.14	8969	23	155398	3866	155339	-3773	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTCCAGGACAGCCAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	76845581	76844111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_76844100_76845600
ONT_simulated_read_12519914	chr4	-	628	4	ISM	ENSMUSG00000040697.11	ENSMUST00000038014.11	5969	15	7810	14442	5993	-14442	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGTTTGGATACGTGTATG	NA	NA	NA	NA	NA	NA	NA	NA	141510392	141501941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_141501971_141502676_141502782_141504205_141504391_141510083
ONT_simulated_read_12521309	chr9	-	1959	1	ISM	ENSMUSG00000043587.16	ENSMUST00000112951.9	3118	7	63800	319	63800	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTCCATTTTTAAACCATT	NA	NA	NA	NA	NA	NA	NA	NA	96707666	96705707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_96705700_96707700
ONT_simulated_read_12527191	chr19	-	1394	1	ISM	ENSMUSG00000041731.14	ENSMUST00000047666.5	3239	11	177300	146	177300	-146	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTAAAATTAGAACAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	24661919	24660525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_24660500_24661900
ONT_simulated_read_1252842	chr14	-	494	4	ISM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	54009	10519	54009	-10519	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTGATGAAGTTGACGCT	NA	NA	NA	NA	NA	NA	NA	NA	45713566	45706770	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_45706832_45710228_45710337_45713029_45713133_45713344
ONT_simulated_read_12528610	chr17	+	764	6	ISM	ENSMUSG00000024392.18	ENST00000375976.8	3482	24	2460	5850	2460	-5842	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGGGAGAGCCTGCGGC	NA	NA	NA	NA	NA	NA	NA	NA	35357548	35360439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401
ONT_simulated_read_12530318	chr12	-	215	1	FSM	ENSMUSG00000101236.2	ENSMUST00000189273.2	268	1	0	53	0	-53	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGATGCCAAAACAGACCA	NA	NA	NA	NA	NA	NA	NA	NA	116471503	116471288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_116471300_116471500
ONT_simulated_read_12531117	chr9	+	2377	10	ISM	ENSMUSG00000032479.16	ENSMUST00000165876.8	5573	19	-64	19522	0	-18745	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCCAGAGACGTGAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	109760867	109893493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295
ONT_simulated_read_12531236	chrX	-	1850	10	ISM	ENSMUSG00000031229.17	ENST00000675732.1	5310	18	19757	2240	19757	-2236	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTGTCATAAAATTAATGG	NA	NA	NA	NA	NA	NA	NA	NA	104869860	104843456	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864491_104867314_104867422_104869706
ONT_simulated_read_12533007	chr7	-	779	1	Genic_Genomic	ENSMUSG00000030970.17	novel	NA	NA	NA	NA	26907	15	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTAAGTTTCACAAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	132590070	132589291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr7_-_132589300_132590100
ONT_simulated_read_12533945	chr11	-	1036	1	ISM	ENSMUSG00000020413.12	ENSMUST00000020683.10	4640	8	14874	2145	14874	-2145	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGCCGAAAGTACCAGA	NA	NA	NA	NA	NA	NA	NA	NA	8946317	8945281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_8945300_8946300
ONT_simulated_read_12539572	chr2	-	942	7	ISM	ENSMUSG00000027215.14	ENSMUST00000111257.8	1003	10	18746	-169	18746	169	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTACTGCCTGGGATA	NA	NA	NA	NA	NA	NA	NA	NA	93264278	93250005	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205
ONT_simulated_read_12541103	chr2	-	641	3	ISM	ENSMUSG00000026740.13	ENSMUST00000091418.12	5070	13	172911	2978	172911	-2978	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATTTTCTCAAGGAATCT	NA	NA	NA	NA	NA	NA	NA	NA	18224711	18214121	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_18214232_18222055_18222137_18224261
ONT_simulated_read_12546281	chr16	-	973	8	ISM	ENSMUSG00000052504.8	ENSMUST00000232049.2	3011	17	252998	22352	252998	-22352	internal_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGGGATTGTTCTCTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	63431445	63388819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_63388901_63403750_63403961_63405319_63405382_63415920_63416107_63418552_63418679_63422623_63422692_63423893_63423997_63431308
ONT_simulated_read_12549878	chr10	-	396	5	ISM	ENSMUSG00000019989.9	ENSMUST00000020169.9	4253	25	15593	35113	15504	9607	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTACTACTGGCCGGGA	NA	NA	NA	NA	NA	NA	NA	NA	24696530	24683416	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_24683454_24683975_24684096_24685751_24685832_24693764_24693863_24696469
ONT_simulated_read_12549894	chrX	-	305	1	ISM	ENSMUSG00000031429.15	ENSMUST00000033805.15	1430	5	7380	576	4584	166	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTGAAAAACTGGTCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	139850058	139849753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_139849800_139850100
ONT_simulated_read_12553091	chr2	-	770	4	ISM	ENSMUSG00000015087.15	ENSMUST00000058137.9	3230	15	20912	2445	20912	-2445	internal_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCACTGATGACTCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	25477621	25475474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25475549_25475635_25475846_25476879_25477031_25477286
ONT_simulated_read_12559386	chr1	-	1350	1	ISM	ENSMUSG00000026491.14	ENST00000366508.5	8234	34	45295	7868	45295	-7800	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAAGAAAGATGTTCCGG	NA	NA	NA	NA	NA	NA	NA	NA	179581608	179580258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_179580300_179581600
ONT_simulated_read_12560215	chr7	-	330	4	ISM	ENSMUSG00000003099.12	ENST00000391919.1	1878	12	20567	1516	20567	-1516	internal_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAGAATCAACTGGACTA	NA	NA	NA	NA	NA	NA	NA	NA	16741160	16740094	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_16740164_16740256_16740298_16740831_16740920_16741028
ONT_simulated_read_12560240	chr8	-	633	3	ISM	ENSMUSG00000034105.10	ENSMUST00000049156.7	3085	8	5830	8144	5830	-8144	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTCTCCACGCAGCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	120499325	120494958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_120495234_120497979_120498125_120499112
ONT_simulated_read_1256528	chr19	+	671	6	ISM	ENSMUSG00000024940.12	ENST00000530785.5	1561	12	3163	135	3163	-135	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTGAACCAGCGGGGACT	NA	NA	NA	NA	NA	NA	NA	NA	5806821	5807985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_5806960_5807062_5807204_5807338_5807501_5807574_5807656_5807738_5807871_5807968
ONT_simulated_read_12568223	chr9	-	220	1	ISM	ENSMUSG00000013076.18	ENSMUST00000013220.8	8957	13	67108	5713	67108	113	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACAATGTTACCAAAACAG	NA	NA	NA	NA	NA	NA	NA	NA	14459194	14458974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_14459000_14459200
ONT_simulated_read_12568224	chr11	+	184	1	NIC	ENSMUSG00000006058.11	novel	1004	8	NA	NA	0	-12362	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCGCGAAAGAAGCCGGG	NA	NA	NA	NA	NA	NA	NA	NA	95925710	95925894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_95925700_95925900
ONT_simulated_read_12570100	chr4	-	1152	4	ISM	ENSMUSG00000028688.14	ENSMUST00000030451.10	2090	8	1530	451	1438	-451	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGGGCAGCAGCTGACT	NA	NA	NA	NA	NA	NA	NA	NA	116663307	116661649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181
ONT_simulated_read_12572676	chr2	-	683	4	ISM	ENSMUSG00000048058.18	ENSMUST00000058790.12	3833	6	72705	4698	72705	-2123	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCCAGGCTGAACAAAATG	NA	NA	NA	NA	NA	NA	NA	NA	101944025	101785245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_101785520_101888251_101888387_101900277_101900404_101943877
ONT_simulated_read_12572708	chr11	-	1344	11	ISM	ENSMUSG00000078619.11	ENSMUST00000106843.8	2548	12	618	739	618	-739	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTAGTTTTAGATCCC	NA	NA	NA	NA	NA	NA	NA	NA	106158007	106154743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106154946_106155020_106155123_106155258_106155382_106155497_106155634_106155765_106155864_106156008_106156171_106156485_106156588_106156713_106156810_106157362_106157519_106157716_106157840_106157963
ONT_simulated_read_12573388	chr7	-	1676	10	ISM	ENSMUSG00000006019.16	ENSMUST00000094816.3	4073	17	15811	62	15811	-62	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGAGCGCCCAAGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	15940107	15931210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_15931356_15932490_15932627_15932769_15932947_15933599_15933885_15935854_15935962_15937096_15937215_15937498_15937673_15937791_15938029_15939321_15939424_15939912
ONT_simulated_read_12574249	chr7	+	972	2	ISM	ENSMUSG00000030779.17	ENST00000381039.7	3371	11	19273	1255	19212	-1255	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCAGAAAAGCAAGCTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	122589352	122600525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_122589606_122599806
ONT_simulated_read_12574635	chr9	-	389	4	ISM	ENSMUSG00000061559.16	ENSMUST00000130368.8	1162	11	11607	117	11592	-112	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATACTTAAAGTACAGCATA	NA	NA	NA	NA	NA	NA	NA	NA	54630174	54624559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117
ONT_simulated_read_12574897	chr16	+	1710	7	ISM	ENSMUSG00000022884.17	ENSMUST00000168891.8	2203	10	2497	-19	-595	19	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATACCAAAAAAAGTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	22928725	22932886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ONT_simulated_read_12575386	chr18	+	803	5	ISM	ENSMUSG00000024283.16	ENST00000679398.1	3450	14	41118	7402	41118	-5929	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGATCCTGTTTCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	7910618	7920210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_7910825_7916051_7916298_7917552_7917676_7918432_7918582_7920131
ONT_simulated_read_12584502	chr10	+	549	3	ISM	ENSMUSG00000025348.10	ENST00000555728.5	3677	26	19724	88	19724	-88	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGGCTCTGCTTTCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	128789641	128793826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_128789728_128789814_128789941_128793489
ONT_simulated_read_12584636	chr7	-	755	4	ISM	ENSMUSG00000035596.15	ENSMUST00000038608.14	2878	8	4859	986	4859	-986	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGCTGTGCCTGGCTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	3691663	3681773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_3681849_3686807_3686985_3688672_3689034_3691521
ONT_simulated_read_12587786	chr19	+	271	1	ISM	ENSMUSG00000024835.16	ENSMUST00000008893.9	1888	11	4985	161	4985	-161	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACCACCTGACTTTTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	4203602	4203873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4203600_4203900
ONT_simulated_read_12591693	chr2	-	1836	7	ISM	ENSMUSG00000027201.17	ENSMUST00000067780.10	2999	16	23240	63	23203	-63	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAAAGTCTTAACATTT	NA	NA	NA	NA	NA	NA	NA	NA	124942340	124929724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_124930958_124937627_124937680_124937831_124938041_124939482_124939555_124939896_124939996_124940369_124940439_124942238
ONT_simulated_read_12592169	chr13	-	532	1	ISM	ENSMUSG00000058331.16	ENSMUST00000144183.3	2312	4	5531	1366	5531	-1366	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCTTCACCAACACCAACA	NA	NA	NA	NA	NA	NA	NA	NA	67897816	67897284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_67897300_67897800
ONT_simulated_read_12592327	chr5	-	1548	9	NNC	ENSMUSG00000029169.12	novel	3010	14	NA	NA	23641	-190	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTTAGAAATGGTTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	52324190	52307734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314912_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042
ONT_simulated_read_1259606	chr9	+	431	1	ISM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	31234	141	31234	-141	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTTGCCTCCCAGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	108214561	108214992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108214600_108215000
ONT_simulated_read_12597767	chr9	-	367	3	ISM	ENSMUSG00000090626.10	ENSMUST00000184831.8	1652	11	14309	851	14053	-850	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAGGAGAATTAATGA	NA	NA	NA	NA	NA	NA	NA	NA	72385185	72369207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_72369273_72380939_72381075_72385018
ONT_simulated_read_12598411	chr4	-	731	7	ISM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	5053	3947	5053	-3947	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGAGTTTGGCTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	149246111	149238394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085
ONT_simulated_read_12600175	chr19	-	3131	1	ISM	ENSMUSG00000025085.17	ENSMUST00000079360.12	7152	26	178732	1437	81613	-896	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTGTTCTCTGTTATCTC	NA	NA	NA	NA	NA	NA	NA	NA	57025732	57022601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_57022600_57025700
ONT_simulated_read_1260054	chrX	-	1116	6	ISM	ENSMUSG00000057421.13	ENSMUST00000079987.13	2530	13	5556	5097	5556	-5097	internal_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATGATGAAGAAGAAGACAG	NA	NA	NA	NA	NA	NA	NA	NA	94994963	94984037	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915
ONT_simulated_read_1260296	chr4	-	833	3	ISM	ENSMUSG00000073705.11	ENSMUST00000030813.10	1110	5	5956	0	5896	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGTCTGCTTGAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	149216130	149212654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_149213386_149214609_149214677_149216095
ONT_simulated_read_12604131	chr5	-	3071	13	ISM	ENSMUSG00000029576.18	ENSMUST00000085758.10	3714	15	1039	657	8	-620	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGCGGCATCTGATGGGCG	NA	NA	NA	NA	NA	NA	NA	NA	142529744	142471253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_142471308_142471609_142471747_142472509_142472862_142473201_142473393_142474157_142474309_142479982_142480156_142480490_142480729_142481080_142481194_142483592_142483754_142489667_142489706_142492213_142492844_142493824_142494073_142529159
ONT_simulated_read_12604224	chr7	-	1722	3	ISM	ENSMUSG00000063047.10	ENSMUST00000205874.2	1907	6	5294	0	1523	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTCATCATGTGACC	NA	NA	NA	NA	NA	NA	NA	NA	27673270	27658559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_27660056_27671047_27671147_27673143
ONT_simulated_read_12605793	chr10	-	1653	14	ISM	ENSMUSG00000010461.17	ENST00000452339.6	1781	15	13972	0	13972	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	201	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACGGATGAAATCATACTC	NA	NA	NA	NA	NA	NA	NA	NA	23035052	22982003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_22982188_22985869_22985971_22987458_22987581_22989808_22989924_22992450_22992612_22992717_22992777_22999749_22999840_23014088_23014173_23015858_23015996_23027829_23027996_23031817_23031898_23033149_23033294_23033409_23033553_23034985
ONT_simulated_read_12606560	chr13	-	246	3	ISM	ENSMUSG00000021468.9	ENSMUST00000021920.8	2606	15	32	40611	32	-40611	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGCTCTCAACTACAACA	NA	NA	NA	NA	NA	NA	NA	NA	53531401	53527394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_53527460_53527997_53528106_53531328
ONT_simulated_read_12606789	chr18	+	399	2	ISM	ENSMUSG00000025423.17	ENSMUST00000114777.10	3060	14	37	56328	37	-49465	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTTGGATGGTAGCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	77152940	77185168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_77153116_77184944
ONT_simulated_read_12608542	chr3	-	552	5	ISM	ENSMUSG00000038170.16	ENST00000369349.7	4558	23	27685	29793	27685	-20021	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGCCACCTGTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	97704125	97666190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_97666247_97700054_97700173_97700460_97700637_97700800_97700925_97704047
ONT_simulated_read_1260994	chr14	-	434	1	ISM	ENSMUSG00000006289.15	ENSMUST00000159292.8	3388	11	9026	1840	8821	252	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACCCTTAAAAAGGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	51153324	51152890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_51152900_51153300
ONT_simulated_read_1261145	chr4	-	646	1	ISM	ENSMUSG00000000409.15	ENSMUST00000167288.8	2074	13	9378	5	9378	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTCTACTGCATACTT	NA	NA	NA	NA	NA	NA	NA	NA	129442787	129442141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129442100_129442800
ONT_simulated_read_12611457	chr5	-	857	8	ISM	ENSMUSG00000033970.16	ENSMUST00000038131.10	1317	9	1232	284	1232	-284	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCTACTATGAGCACCGA	NA	NA	NA	NA	NA	NA	NA	NA	151573475	151566504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_151566569_151567175_151567246_151568077_151568177_151568254_151568392_151568982_151569165_151570903_151571002_151571709_151571778_151573336
ONT_simulated_read_12614830	chrX	-	564	4	ISM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	781	183	632	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1491	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAGGCAGAATTCTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	153998664	153996310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998596
ONT_simulated_read_12615356	chr1	+	832	6	ISM	ENSMUSG00000026240.13	ENSMUST00000121534.8	5383	8	0	10297	0	-6188	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCTACACTGACATCATC	NA	NA	NA	NA	NA	NA	NA	NA	86510625	86526800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_86510819_86514737_86514958_86516885_86517064_86520012_86520089_86524472_86524562_86526724
ONT_simulated_read_12615723	chr18	+	746	8	ISM	ENSMUSG00000034484.9	ENSMUST00000037850.7	2067	15	73	11245	73	-11245	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCAGGATCCTGACTTAA	NA	NA	NA	NA	NA	NA	NA	NA	53309460	53342692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53331257_53331302_53332828_53332971_53336112_53336192_53342659
ONT_simulated_read_12616142	chr14	-	571	3	ISM	ENSMUSG00000022199.13	ENST00000397267.5	2436	10	5053	406	5021	-396	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCTGCTGAGGCAGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	55145534	55144603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55144817_55144975_55145088_55145288
ONT_simulated_read_12617034	chr2	+	2826	9	ISM	ENSMUSG00000027332.12	ENSMUST00000028807.6	3665	12	9424	483	9424	-483	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCAAGATTGTCACCAAG	NA	NA	NA	NA	NA	NA	NA	NA	118701858	118712907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708141_118708247_118708355_118708429_118710933
ONT_simulated_read_12620587	chr15	-	861	7	ISM	ENSMUSG00000023015.15	ENSMUST00000171702.8	3052	18	19451	3513	19451	-3512	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGCCCTACAATAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	99530073	99521889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960
ONT_simulated_read_12620679	chr2	+	861	7	ISM	ENSMUSG00000027419.10	ENST00000536609.1	2307	11	61	29461	61	-29461	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGCCTCCTCCATCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	143388190	143626487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_143388585_143529483_143529598_143532246_143532356_143538576_143538615_143591044_143591122_143615820_143615910_143626447
ONT_simulated_read_12620813	chr11	+	618	4	ISM	ENSMUSG00000090266.11	ENSMUST00000106370.10	1276	5	307	440	-110	-292	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTATGGACAATTTACT	NA	NA	NA	NA	NA	NA	NA	NA	116734410	116740126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_116734601_116739079_116739185_116739726_116739965_116740041
ONT_simulated_read_12621246	chr9	+	482	3	ISM	ENSMUSG00000093803.6	ENSMUST00000239563.2	4016	11	0	6792	0	-6792	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGCTGCTGGGCCACCCCG	NA	NA	NA	NA	NA	NA	NA	NA	124195826	124197967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_124196070_124197152_124197355_124197930
ONT_simulated_read_1262171	chr2	-	1149	5	ISM	ENSMUSG00000009621.19	ENSMUST00000056176.8	5221	28	156849	1382	156849	-1382	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTACTGCTCTTTGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	27160196	27153497	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_27154224_27157241_27157397_27158162_27158250_27158910_27159035_27160139
ONT_simulated_read_12622602	chr2	+	1035	6	ISM	ENSMUSG00000042369.9	ENSMUST00000046389.5	1898	10	0	5357	0	-5357	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAGCTATTTATGCAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	76200327	76208755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724
ONT_simulated_read_12624880	chr7	-	849	1	ISM	ENSMUSG00000073968.5	ENSMUST00000082175.7	2388	7	8500	397	8443	-390	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTTTCCATTAAGAGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	102328034	102327185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_102327200_102328000
ONT_simulated_read_12624899	chr11	-	444	1	ISM	ENSMUSG00000034449.8	ENSMUST00000047560.8	1254	7	7665	0	7665	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCCCCCCCCCAGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	84712125	84711681	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_84711700_84712100
ONT_simulated_read_1262531	chr12	-	1357	1	ISM	ENSMUSG00000021003.11	ENSMUST00000021390.9	3832	17	55419	390	55419	-390	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTTTTAATAATTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	98170299	98168942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_98168900_98170300
ONT_simulated_read_12625669	chr5	-	428	1	ISM	ENSMUSG00000038569.14	ENSMUST00000117263.8	2371	13	30040	542	30040	-542	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTCCAAACCACTCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	122462255	122461827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_122461800_122462300
ONT_simulated_read_12628060	chr11	+	539	4	ISM	ENSMUSG00000020716.17	ENST00000556855.2	2484	16	7269	4666	7269	-4666	internal_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGAAGCAGGGATTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	79338978	79359631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_79339163_79344628_79344791_79344924_79345029_79359542
ONT_simulated_read_12631768	chr19	-	1078	5	NNC	ENSMUSG00000024958.14	novel	1858	7	NA	NA	1085	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCCCTCCTGTCACTCGT	NA	NA	NA	NA	NA	NA	NA	NA	6917122	6915439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_6915898_6916123_6916243_6916379_6916505_6916628_6916779_6916896
ONT_simulated_read_12632054	chr10	-	363	3	ISM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	4703	8596	4703	-8596	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAATTATCATTGGCGCAT	NA	NA	NA	NA	NA	NA	NA	NA	57403923	57400465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_57400496_57401420_57401591_57403760
ONT_simulated_read_12632521	chr8	-	498	1	ISM	ENSMUSG00000060427.16	ENSMUST00000121886.8	2259	5	13116	1078	6920	-521	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGAGTTCCTATCATAGA	NA	NA	NA	NA	NA	NA	NA	NA	70065083	70064585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70064600_70065100
ONT_simulated_read_12633521	chr18	-	2377	6	ISM	ENSMUSG00000024456.17	ENSMUST00000115629.9	5416	26	50848	125	50848	-125	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTTAATTAAAAAAATTTT	NA	NA	NA	NA	NA	NA	NA	NA	37988621	37976782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_37978552_37984603_37984691_37986355_37986492_37986596_37986762_37987532_37987658_37988526
ONT_simulated_read_12635001	chr14	+	1264	7	ISM	ENSMUSG00000021843.18	ENSMUST00000190252.7	4436	41	5	59853	5	-59575	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCAGTGTTGTTATAG	NA	NA	NA	NA	NA	NA	NA	NA	47886772	47914161	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141
ONT_simulated_read_12636212	chr15	-	580	5	ISM	ENSMUSG00000022557.12	ENSMUST00000023217.11	2491	16	21691	1722	21691	-1722	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTCTCGCCAGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	76339786	76338910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695
ONT_simulated_read_12637643	chr11	-	817	1	ISM	ENSMUSG00000020883.19	ENSMUST00000103143.10	8601	15	64564	1676	64533	-1676	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTTAAGAAAGTTATTTGA	NA	NA	NA	NA	NA	NA	NA	NA	97975874	97975057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97975100_97975900
ONT_simulated_read_12637803	chr16	-	1425	10	ISM	ENSMUSG00000022515.7	ENSMUST00000229765.2	1779	11	3647	258	3616	-258	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCAATTTCAGCCATTCTT	NA	NA	NA	NA	NA	NA	NA	NA	4778421	4763890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260
ONT_simulated_read_12638286	chr1	+	2507	6	ISM	ENSMUSG00000042207.18	ENST00000367264.7	6038	27	61711	65	61688	-65	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTGTAAGACAGCTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	134549617	134560193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_134549832_134552448_134552935_134555002_134555115_134556335_134556491_134558170_134558492_134558974
ONT_simulated_read_12640897	chr15	+	428	2	FSM	ENSMUSG00000005124.11	ENST00000519433.1	442	2	14	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGTGTGGCTCAGGGTA	NA	NA	NA	NA	NA	NA	NA	NA	66763356	66791304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_66763484_66791003
ONT_simulated_read_12641676	chr13	-	831	7	ISM	ENSMUSG00000021417.16	ENSMUST00000110251.9	1395	10	3792	164	3792	-164	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCTGTGAAGACCACCAC	NA	NA	NA	NA	NA	NA	NA	NA	35174323	35161903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163
ONT_simulated_read_12647353	chr17	+	1264	10	ISM	ENSMUSG00000024369.17	ENSMUST00000097343.11	1607	11	17	1615	0	-1500	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTGGACGCTGCTACTG	NA	NA	NA	NA	NA	NA	NA	NA	35069383	35073730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35069651_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671
ONT_simulated_read_126518	chr19	-	1431	4	ISM	ENSMUSG00000024767.12	ENSMUST00000123594.8	1728	7	6179	-8	6179	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTGGCCCATGCATC	NA	NA	NA	NA	NA	NA	NA	NA	7177420	7175566	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307
ONT_simulated_read_12651818	chr8	+	3128	12	ISM	ENSMUSG00000031822.21	ENSMUST00000118136.2	4492	16	25194	2824	25194	-2824	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGGCAAGGGATTGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	121289361	121303241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_121289565_121293106_121293280_121293665_121293864_121294501_121294694_121294899_121295223_121295790_121296116_121297455_121298079_121299042_121299156_121299374_121299646_121300909_121301018_121301672_121302045_121303014
ONT_simulated_read_12656039	chr4	+	618	5	ISM	ENSMUSG00000035601.10	ENSMUST00000044673.9	2064	9	3307	8209	0	-7220	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCTCTGGAAACCCTT	NA	NA	NA	NA	NA	NA	NA	NA	45300433	45307922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_45300628_45301235_45301351_45304263_45304389_45305743_45305897_45307891
ONT_simulated_read_12656200	chr13	-	1318	1	ISM	ENSMUSG00000021376.12	ENSMUST00000021806.11	2708	9	17860	490	17774	-490	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACCATCACAGTTAAAAATA	NA	NA	NA	NA	NA	NA	NA	NA	47178826	47177508	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_47177500_47178800
ONT_simulated_read_12658334	chr19	+	642	4	ISM	ENSMUSG00000023307.15	ENSMUST00000024078.15	1809	6	9647	595	9622	480	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGATTCCATCATTAATG	NA	NA	NA	NA	NA	NA	NA	NA	37194588	37198955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_37194713_37197701_37197886_37198037_37198205_37198788
ONT_simulated_read_12658670	chr19	-	1157	4	ISM	ENSMUSG00000024908.16	ENST00000534534.5	2950	19	109144	0	77670	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGCTGTGGTTAGAATTT	NA	NA	NA	NA	NA	NA	NA	NA	3516576	3506249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492
ONT_simulated_read_12664499	chr7	+	1420	12	ISM	ENSMUSG00000030769.16	ENST00000424767.6	2108	15	12	5380	0	-5380	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCAGCCAGGGAGGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	122814035	122867024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_122814221_122834820_122834978_122837346_122837419_122838591_122838697_122839961_122840022_122849293_122849400_122851635_122851717_122857576_122857783_122859729_122859866_122864411_122864520_122864809_122864961_122866971
ONT_simulated_read_12664905	chr1	-	2355	1	ISM	ENSMUSG00000040848.12	ENSMUST00000043338.10	5535	8	15144	2603	15116	-2603	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCTAGGTTGAGATCAAG	NA	NA	NA	NA	NA	NA	NA	NA	165006863	165004508	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_165004500_165006900
ONT_simulated_read_12666081	chr9	-	1559	8	ISM	ENSMUSG00000053110.14	ENSMUST00000065353.13	4171	9	2893	2126	2613	29	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGTGGTTTCTTCAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	8001704	7934125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_7934734_7936515_7936629_7938408_7938540_7950492_7950541_7952953_7953136_7962289_7962404_7973796_7973913_8001457
ONT_simulated_read_1266816	chr5	-	1306	14	ISM	ENSMUSG00000032741.10	ENSMUST00000046426.10	4712	28	41193	1790	41193	-19	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTCCTGAGCTCCAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	120685545	120674007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_120674290_120675625_120675707_120675876_120676017_120677067_120677153_120677274_120677344_120677853_120677901_120678638_120678755_120679942_120680033_120680519_120680592_120681409_120681518_120682477_120682551_120683139_120683194_120683322_120683380_120685513
ONT_simulated_read_12668221	chr18	+	286	3	FSM	ENSMUSG00000037058.17	ENST00000511706.5	463	3	39	138	0	-89	multi-exon	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCTGAGCAGCCGGCCGC	NA	NA	NA	NA	NA	NA	NA	NA	35731748	35749309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_35731813_35743923_35744088_35749251
ONT_simulated_read_12668360	chr11	-	292	2	ISM	ENSMUSG00000001034.18	ENSMUST00000101085.9	3254	6	4787	283	4787	-283	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGGATAGACCCAGCATC	NA	NA	NA	NA	NA	NA	NA	NA	61380305	61379920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_61380097_61380189
ONT_simulated_read_12670631	chrX	-	946	3	ISM	ENSMUSG00000073139.10	ENSMUST00000114630.3	1307	7	14194	-346	14194	346	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	151	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTGCTGTGTTCAGATA	NA	NA	NA	NA	NA	NA	NA	NA	69506592	69504218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_69504899_69505796_69505921_69506450
ONT_simulated_read_12670697	chr17	-	1003	3	ISM	ENSMUSG00000077450.14	ENSMUST00000173860.8	1544	5	11246	336	11230	-336	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	147	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCCCTGTATCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	33968034	33966059	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_33966788_33967483_33967565_33967840
ONT_simulated_read_12671163	chr1	+	763	4	ISM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	5943	175	5943	-175	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTTATTTGACCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	172145876	172147233	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_172146012_172146120_172146535_172146859_172146991_172147150
ONT_simulated_read_12671866	chr9	-	970	1	ISM	ENSMUSG00000043895.7	ENSMUST00000054197.7	6394	2	8223	5228	8223	-5228	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGAGGTGGGAACCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	20879854	20878884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_20878900_20879900
ONT_simulated_read_12672853	chr8	-	898	6	ISM	ENSMUSG00000038542.15	ENSMUST00000164416.8	2860	14	20027	738	20027	-738	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTCTCTCTCTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	13135432	13127926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135322
ONT_simulated_read_12676224	chr9	+	419	1	FSM	ENSMUSG00000049932.4	ENSMUST00000052686.4	1384	1	394	571	394	-571	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCGGCCCCTCGCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	44246384	44246803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_44246400_44246800
ONT_simulated_read_12681174	chr9	-	1127	1	ISM	ENSMUSG00000032504.16	ENSMUST00000035086.13	5951	18	53178	2211	53163	517	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTCTTACTTCTTTATTC	NA	NA	NA	NA	NA	NA	NA	NA	113484149	113483022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_113483000_113484100
ONT_simulated_read_1268301	chr3	+	987	11	ISM	ENSMUSG00000027751.14	ENSMUST00000197502.5	2751	27	306	19504	8	-7705	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGAAAGGAAAGCAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	54600533	54616553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451
ONT_simulated_read_12684440	chr17	-	1028	1	ISM	ENSMUSG00000004865.17	ENSMUST00000130643.9	4653	16	32482	1552	32224	-1552	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTGGTTTTTAATGTAGA	NA	NA	NA	NA	NA	NA	NA	NA	28809201	28808173	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_28808200_28809200
ONT_simulated_read_12684471	chr9	-	176	1	ISM	ENSMUSG00000003410.9	ENST00000359227.8	4741	8	33213	3630	33200	-3630	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGTTTCGGCTTCGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	21930106	21929930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21929900_21930100
ONT_simulated_read_12684939	chr14	-	634	7	ISM	ENSMUSG00000033885.16	ENST00000383715.8	1659	17	42410	9152	42386	-9152	internal_fragment	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCATTGCGAATTGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	14329132	14318828	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026
ONT_simulated_read_12685887	chr7	-	323	1	ISM	ENSMUSG00000063802.6	ENSMUST00000079970.6	1593	8	24225	0	24125	0	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	NA	NA	NA	NA	NA	NA	NA	4663842	4663519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_4663500_4663800
ONT_simulated_read_12686573	chr5	+	681	5	ISM	ENSMUSG00000029149.15	ENSMUST00000201937.4	889	7	202	201	6	-201	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTAGGTCAGGTGAAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	31409270	31410340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238
ONT_simulated_read_1268740	chr6	-	310	3	ISM	ENSMUSG00000030246.13	ENSMUST00000239397.2	1287	8	12208	2341	12208	-2341	internal_fragment	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTACACCAACTGGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	142441461	142438318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_142438343_142439825_142439944_142441293
ONT_simulated_read_12687561	chr11	-	746	3	ISM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	232	1045	232	-345	internal_fragment	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACAGTGCTGTCTGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	120238685	120237561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120237645_120237736_120238176_120238461
ONT_simulated_read_12687603	chr16	-	1113	1	ISM	ENSMUSG00000097397.3	ENSMUST00000181498.3	1694	3	3472	0	3472	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTTGCCTGCATGTATC	NA	NA	NA	NA	NA	NA	NA	NA	4754025	4752912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4752900_4754000
ONT_simulated_read_12691332	chr16	-	2582	5	ISM	ENSMUSG00000022893.15	ENSMUST00000023610.15	4884	9	4441	494	4441	-494	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTATAATAACATATTTAT	NA	NA	NA	NA	NA	NA	NA	NA	85595560	85591208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_85592989_85593526_85593703_85594605_85594782_85594891_85595079_85595297
ONT_simulated_read_12692704	chr7	-	485	4	ISM	ENSMUSG00000003873.12	ENSMUST00000211365.2	801	6	712	170	651	-6	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCCTCCCACTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	45115548	45111290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45111387_45112822_45112928_45114612_45114749_45115400
ONT_simulated_read_12692905	chr3	-	796	7	FSM	ENSMUSG00000015697.15	ENST00000368963.5	945	7	18	131	18	-131	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCCTATCCAAACCGCCC	NA	NA	NA	NA	NA	NA	NA	NA	95263491	95249095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_95249158_95252836_95252911_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244
ONT_simulated_read_12693180	chr7	-	2013	10	ISM	ENSMUSG00000030986.14	ENSMUST00000106139.8	2233	11	27723	62	27723	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTACTATTCCATGCT	NA	NA	NA	NA	NA	NA	NA	NA	133350707	133322838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571
ONT_simulated_read_12693697	chr2	-	796	6	ISM	ENSMUSG00000089739.3	ENSMUST00000125544.3	2367	8	6814	2458	6814	-2458	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGAGTCCCCCACTGC	NA	NA	NA	NA	NA	NA	NA	NA	167496602	167452227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_167452350_167459748_167459898_167486683_167486897_167487951_167488097_167488887_167488980_167496527
ONT_simulated_read_12696207	chr6	-	1860	1	NIC	ENSMUSG00000045896.15	novel	3982	5	NA	NA	22848	-1633	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTTGTAGTCTCCATG	NA	NA	NA	NA	NA	NA	NA	NA	83785875	83784015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_83784000_83785900
ONT_simulated_read_12699072	chr14	-	658	1	ISM	ENSMUSG00000095304.10	ENSMUST00000052286.16	1555	4	14588	349	13962	-349	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCACAAATTCTGTGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	25888936	25888278	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_25888300_25888900
ONT_simulated_read_12700120	chr19	-	1438	4	ISM	ENSMUSG00000034321.15	ENSMUST00000112123.4	2296	6	1992	571	1734	-571	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAATTGACAGGAGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	41919870	41911301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_41912528_41913149_41913235_41913627_41913679_41919794
ONT_simulated_read_12700609	chr8	-	1844	1	ISM	ENSMUSG00000096188.2	ENSMUST00000179802.2	7734	4	40519	5254	40519	-5254	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCCATGTTCAGAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	105081920	105080076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_105080100_105081900
ONT_simulated_read_12701315	chr15	-	671	1	ISM	ENSMUSG00000022454.18	ENST00000395487.6	3190	20	307575	0	307575	0	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCATGCGAGCCCGCGTCT	NA	NA	NA	NA	NA	NA	NA	NA	95118001	95117330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_95117300_95118000
ONT_simulated_read_12702175	chr7	-	1230	1	FSM	ENSMUSG00000070462.5	ENSMUST00000094216.5	4433	1	0	3203	0	-3203	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGCTGCTGTCTAGCG	NA	NA	NA	NA	NA	NA	NA	NA	83533513	83532283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_83532300_83533500
ONT_simulated_read_1270245	chr9	+	614	5	ISM	ENSMUSG00000032245.13	ENSMUST00000034776.13	2142	7	7230	1182	7145	-55	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCATCTATGTTCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	62753296	62758106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_62753335_62754247_62754437_62754866_62754923_62756390_62756514_62757898
ONT_simulated_read_12707488	chr9	-	1292	8	ISM	ENSMUSG00000023249.16	ENSMUST00000123555.8	2495	11	1507	599	1507	-237	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCCCAGGTCCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	106352068	106348424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_106348602_106348958_106349115_106350227_106350406_106350631_106350719_106350879_106351033_106351256_106351484_106351595_106351720_106351878
ONT_simulated_read_12707910	chr18	-	1096	7	ISM	ENSMUSG00000024587.11	ENSMUST00000236186.2	1784	15	11159	0	11159	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATCTAATACTGTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	64638427	64633973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_64634156_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227
ONT_simulated_read_12708343	chr12	-	763	1	ISM	ENSMUSG00000061533.17	ENSMUST00000141429.8	4807	26	384773	382	384701	-382	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCAGTCGTCCCACTGTG	NA	NA	NA	NA	NA	NA	NA	NA	90966410	90965647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_90965600_90966400
ONT_simulated_read_12710782	chr7	-	656	1	ISM	ENSMUSG00000030934.10	ENSMUST00000084500.8	2152	10	18087	178	11793	-178	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTTGAATAAAGCTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	132160040	132159384	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_132159400_132160000
ONT_simulated_read_12713989	chr6	-	670	1	ISM	ENSMUSG00000018999.15	ENSMUST00000019143.9	6253	10	18521	4541	18521	-4541	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATGCGAAAAATTAGACCC	NA	NA	NA	NA	NA	NA	NA	NA	34135525	34134855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_34134900_34135500
ONT_simulated_read_12714535	chr19	-	732	8	ISM	ENSMUSG00000034371.10	ENSMUST00000037678.7	2253	17	5079	2535	5079	-2535	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAAGCCCCTGAAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	10576543	10572098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395
ONT_simulated_read_1271554	chr9	-	182	2	ISM	ENSMUSG00000003410.9	ENSMUST00000003501.9	5014	7	27297	3708	27297	-3708	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGTGGCAGCTTTTCGG	NA	NA	NA	NA	NA	NA	NA	NA	21936009	21930008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21930151_21935969
ONT_simulated_read_1271851	chr4	+	285	2	ISM	ENSMUSG00000037692.15	ENSMUST00000105914.2	5898	6	26756	0	26756	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGAGCGAGAGAGCGAGC	NA	NA	NA	NA	NA	NA	NA	NA	132793559	132804553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_132793589_132804297
ONT_simulated_read_12718804	chr16	+	723	8	ISM	ENSMUSG00000022503.11	ENSMUST00000023146.5	2121	11	116	2833	116	-2833	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCACGACTGGGGGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	10229927	10239459	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090_10239202_10239440
ONT_simulated_read_12719212	chr8	+	552	4	NIC	ENSMUSG00000003033.16	novel	2084	12	NA	NA	-13	-4945	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAGTTACGCCTGGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	72993889	73005661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_+_72994088_73003592_73003724_73004524_73004673_73005586
ONT_simulated_read_127217	chr14	-	739	1	ISM	ENSMUSG00000033712.7	ENST00000389279.7	3875	21	14488	0	14488	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGTGAGTCTTTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	70376355	70375616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_70375600_70376400
ONT_simulated_read_12723510	chr14	-	590	1	ISM	ENSMUSG00000061244.15	ENSMUST00000162175.9	12699	18	52309	9665	52052	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAAATTTTCAGTGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	49251801	49251211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_49251200_49251800
ONT_simulated_read_12724987	chr9	-	740	2	FSM	ENSMUSG00000032412.9	ENST00000462082.1	765	2	26	-1	26	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGATCTGAAAGTAGACTC	NA	NA	NA	NA	NA	NA	NA	NA	96227921	96215111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_96215748_96227817
ONT_simulated_read_12729193	chr15	-	207	1	NIC	ENSMUSG00000022474.16	novel	1059	7	NA	NA	5084	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTACTGTGTGTCATTTC	NA	NA	NA	NA	NA	NA	NA	NA	81839950	81839743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_81839700_81840000
ONT_simulated_read_12734286	chr14	-	787	3	ISM	ENSMUSG00000002320.16	ENSMUST00000121937.8	2398	5	2745	267	2681	-175	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAAGATGGACTGAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	55878027	55873691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55874070_55875366_55875590_55877841
ONT_simulated_read_1274144	chr6	-	1068	1	NIC	ENSMUSG00000030110.14	novel	5456	20	NA	NA	41698	198	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCCCCTAGAGGGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	118132396	118131328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_118131300_118132400
ONT_simulated_read_12747459	chr15	-	265	4	ISM	ENSMUSG00000022555.13	ENSMUST00000023214.11	1888	17	8637	804	8637	-804	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGATGGTGTACGCACCT	NA	NA	NA	NA	NA	NA	NA	NA	76387514	76387018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76387085_76387158_76387272_76387353_76387399_76387473
ONT_simulated_read_1274893	chr11	-	154	1	Antisense	novelGene_ENSMUSG00000038335.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCACATTCTTCCTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	74794837	74794683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr11_-_74794700_74794800
ONT_simulated_read_12750412	chr6	-	775	1	ISM	ENSMUSG00000030268.18	ENSMUST00000032402.12	7833	11	48525	5678	39350	-355	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGGTCCTGTGCCTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	144946013	144945238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_144945200_144946000
ONT_simulated_read_12751790	chr3	+	775	8	ISM	ENSMUSG00000068823.11	ENSMUST00000197827.5	2671	19	19416	10346	19364	-10346	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGGTTTTGGTTTCATC	NA	NA	NA	NA	NA	NA	NA	NA	102947343	102954119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100
ONT_simulated_read_12754131	chr8	-	2443	6	ISM	ENSMUSG00000031955.11	ENSMUST00000212349.2	3116	7	10804	576	0	-171	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGCAATCTGCTGTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	112447964	112437684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_112438027_112439232_112439323_112439970_112441069_112441914_112442032_112442246_112442409_112447330
ONT_simulated_read_12757097	chr6	-	2058	1	ISM	ENSMUSG00000063694.6	ENSMUST00000161401.2	3123	3	1181	737	1181	-737	mono-exon	FALSE	NA	NA	NA	NA	NA	1969	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTATTTCCTGACAGGC	NA	NA	NA	NA	NA	NA	NA	NA	50542337	50540279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_50540300_50542300
ONT_simulated_read_127577	chr1	-	469	6	ISM	ENSMUSG00000057363.13	ENST00000283148.12	2033	15	52887	6164	52887	-6164	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGGCTACACCACTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	43814037	43794855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976
ONT_simulated_read_12760264	chr11	+	604	6	ISM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	347	32848	347	-32848	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCGGAACCTGGTACACAGT	NA	NA	NA	NA	NA	NA	NA	NA	76836676	76845357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335
ONT_simulated_read_12760673	chr3	-	1340	6	FSM	ENSMUSG00000027957.14	ENST00000640715.1	1800	6	-1	461	-1	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTATCCAGGGTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	116488283	116466801	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_116467368_116471511_116471631_116474753_116474926_116480710_116480834_116480919_116481075_116488078
ONT_simulated_read_12761042	chr9	-	1049	1	ISM	ENSMUSG00000039542.17	ENSMUST00000193547.6	6050	18	293390	2351	64368	561	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGCATGGGTGAAGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	49416835	49415786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_49415800_49416800
ONT_simulated_read_12761634	chr3	-	483	1	ISM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	0	5593	0	-5593	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGGGAAAGTGGGCACCC	NA	NA	NA	NA	NA	NA	NA	NA	58433313	58432830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_58432800_58433300
ONT_simulated_read_12762895	chr11	+	183	2	ISM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	0	15848	0	-7945	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGGAAGAGCGGAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	109541746	109544634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_109541900_109544604
ONT_simulated_read_12763688	chr14	-	1214	1	NIC	ENSMUSG00000022208.13	novel	4489	6	NA	NA	7156	94	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAAGCTGTACAAGAGGG	NA	NA	NA	NA	NA	NA	NA	NA	55345853	55344639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_55344600_55345900
ONT_simulated_read_12764531	chr1	-	2064	2	ISM	ENSMUSG00000037138.19	ENSMUST00000095027.9	5857	22	445743	364	445743	-363	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACGTTAGAATATTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	38220523	38216770	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_38218652_38220340
ONT_simulated_read_1277014	chr3	-	376	1	ISM	ENSMUSG00000031286.7	ENSMUST00000033643.6	2732	2	15332	1960	15332	-1960	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCATCTCTTCTACTGTA	NA	NA	NA	NA	NA	NA	NA	NA	85779491	85779115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_85779100_85779500
ONT_simulated_read_12771522	chr13	+	378	1	ISM	ENSMUSG00000046949.17	ENSMUST00000058978.9	3842	7	22533	846	20067	-846	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGATTAGCCTTTTAATA	NA	NA	NA	NA	NA	NA	NA	NA	34171202	34171580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_34171200_34171600
ONT_simulated_read_12772434	chr8	+	776	7	ISM	ENSMUSG00000003573.16	ENSMUST00000003669.8	2323	9	0	3006	0	-1817	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCAGTCCGGGCAGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	70737895	70743997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70737966_70738043_70738201_70738580_70738713_70742043_70742152_70742701_70742824_70743656_70743814_70743967
ONT_simulated_read_1277479	chr19	+	2966	14	NIC	ENSMUSG00000024985.21	novel	4114	14	NA	NA	0	-131	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAATTTTAAATATGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	55730315	55921016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_+_55730963_55731207_55731275_55731504_55731630_55743445_55743515_55806195_55806298_55896854_55896988_55899010_55899102_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55912961_55913013_55919865
ONT_simulated_read_12776731	chr19	-	1321	4	ISM	ENSMUSG00000024797.15	ENSMUST00000025711.13	2675	10	5760	1661	5729	-1661	internal_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGTGTGGTGGAGGACACT	NA	NA	NA	NA	NA	NA	NA	NA	6121501	6119532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6119714_6119887_6120104_6120468_6121187_6121295
ONT_simulated_read_12777371	chr7	+	977	6	ISM	ENSMUSG00000030638.14	ENST00000324537.5	1442	9	95374	181	95374	141	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTGCTAAAACGAGTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	81920093	81956436	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
ONT_simulated_read_12781047	chr10	-	330	3	ISM	ENSMUSG00000035890.10	ENST00000569893.1	931	9	5771	0	5771	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	197	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCACCTGGCCATCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	79596886	79594920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_79595071_79596624_79596741_79596822
ONT_simulated_read_12781593	chr17	-	1419	7	ISM	ENSMUSG00000025728.17	ENSMUST00000208071.2	2926	10	4431	4514	4431	3030	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCCTGGTGAGCCCAGTA	NA	NA	NA	NA	NA	NA	NA	NA	26156437	26149939	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737
ONT_simulated_read_12783164	chr4	+	104	2	ISM	ENSMUSG00000029034.10	ENST00000421495.6	1488	12	3154	116	3154	-116	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	607	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCGATGGCTCTGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	155972707	155972880	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155972784_155972852
ONT_simulated_read_1278354	chr7	+	628	3	ISM	ENSMUSG00000030685.6	ENSMUST00000032924.6	1676	6	0	4261	0	-4261	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGACATCACCCCGGG	NA	NA	NA	NA	NA	NA	NA	NA	126528050	126540542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_126528471_126529804_126529975_126540504
ONT_simulated_read_12786519	chr8	-	520	1	ISM	ENSMUSG00000037251.6	ENSMUST00000061850.5	3613	5	10498	2512	10498	-2512	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCATGCCTTCCTACAAT	NA	NA	NA	NA	NA	NA	NA	NA	26473663	26473143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26473100_26473700
ONT_simulated_read_12787524	chr11	-	753	1	NIC	ENSMUSG00000020696.19	novel	4973	7	NA	NA	22841	2	mono-exon	FALSE	NA	NA	NA	NA	NA	551	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGGTTGAGTCACTTCT	NA	NA	NA	NA	NA	NA	NA	NA	82697016	82696263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_82696300_82697000
ONT_simulated_read_12789250	chr7	-	933	1	ISM	ENSMUSG00000002602.17	ENSMUST00000002677.11	4265	20	29703	779	29703	-422	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGATGGTCAACTACAGA	NA	NA	NA	NA	NA	NA	NA	NA	25458409	25457476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_25457500_25458400
ONT_simulated_read_127907	chr5	-	1604	8	ISM	ENSMUSG00000028771.14	ENSMUST00000030556.8	3280	18	46305	6063	46305	-6063	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCGTGTGGGGACTGGA	NA	NA	NA	NA	NA	NA	NA	NA	21214604	21197705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_21197775_21198227_21198297_21202780_21203755_21206269_21206356_21207420_21207517_21207614_21207693_21210346_21210414_21214439
ONT_simulated_read_12791506	chr7	+	528	5	ISM	ENSMUSG00000030774.14	ENST00000530617.5	2847	15	50969	7644	50969	-7148	internal_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCCTATGGACCCAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	97543121	97553942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844
ONT_simulated_read_12792114	chr9	-	198	1	NIC	ENSMUSG00000032565.10	novel	1631	3	NA	NA	1313	-982	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTGGAACCCAGAGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	105007710	105007512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_105007500_105007700
ONT_simulated_read_12795086	chr14	-	635	1	ISM	ENSMUSG00000022091.7	ENSMUST00000227653.2	3061	21	24798	122	23399	-122	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCCTGGCTTATCAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	70418673	70418038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_70418000_70418700
ONT_simulated_read_12797651	chr7	-	697	4	ISM	ENSMUSG00000025147.8	ENSMUST00000209732.2	977	5	9604	0	9604	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGTCTGTGTGTGCGC	NA	NA	NA	NA	NA	NA	NA	NA	141570208	141562964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570081
ONT_simulated_read_12801309	chr19	+	1986	10	ISM	ENSMUSG00000004054.10	ENSMUST00000004156.10	3898	12	1460	838	1460	-838	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAATATCACGCTCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	5740524	5752055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_5741017_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
ONT_simulated_read_12803324	chr1	-	1472	1	FSM	ENSMUSG00000100394.2	ENSMUST00000185888.2	1779	1	0	307	0	-307	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTACGTGGTTTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	152756049	152754577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_152754600_152756000
ONT_simulated_read_12803866	chr11	-	2276	1	ISM	ENSMUSG00000003949.17	ENSMUST00000004051.8	5642	4	49955	2129	48751	-103	mono-exon	FALSE	NA	NA	NA	NA	NA	542	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTGTTATTTTGTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	90231766	90229490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_90229500_90231800
ONT_simulated_read_12803946	chr15	-	1285	8	ISM	ENSMUSG00000016664.17	ENSMUST00000165095.9	3186	11	42156	1460	42156	-1456	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGGAGCTCCGTTAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	83274860	83261778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623
ONT_simulated_read_12804435	chr9	+	638	1	ISM	ENSMUSG00000032479.16	ENSMUST00000164930.8	4925	11	4	31257	0	-30481	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCTCGTCTCCAGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	109881119	109881757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_109881100_109881800
ONT_simulated_read_12806374	chr12	-	838	1	ISM	ENSMUSG00000112980.2	ENSMUST00000220477.2	2941	2	607	1819	607	-1819	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGACCCAACCAGTAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	116368223	116367385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_116367400_116368200
ONT_simulated_read_12807457	chrX	-	677	5	ISM	ENSMUSG00000031266.8	ENST00000649178.1	1334	8	5547	209	5547	-209	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTGGCTGTGAGAAACC	NA	NA	NA	NA	NA	NA	NA	NA	133496106	133490829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_133490877_133491694_133491893_133492813_133492976_133494382_133494475_133495928
ONT_simulated_read_12809878	chr11	-	1461	7	ISM	ENSMUSG00000037275.15	ENST00000285873.8	4488	28	31479	3333	31479	-3333	internal_fragment	TRUE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCGGGCTCCTTCTCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	58027792	58015789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683
ONT_simulated_read_1281137	chr4	-	431	4	ISM	ENSMUSG00000023232.18	ENSMUST00000122374.8	1881	10	11556	5255	11556	-4851	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTGTATACAATGTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	130157455	130152542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_130152585_130154435_130154606_130156820_130156959_130157374
ONT_simulated_read_12813293	chr1	-	237	3	ISM	ENSMUSG00000026632.18	ENST00000530441.5	363	5	2657	50	2657	-50	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCTCTGTGGGTGAACT	NA	NA	NA	NA	NA	NA	NA	NA	190792382	190787467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_190787569_190788559_190788623_190792309
ONT_simulated_read_12814526	chr4	-	1734	1	ISM	ENSMUSG00000041261.10	ENSMUST00000066674.8	3853	9	92825	1121	92825	-1121	mono-exon	FALSE	NA	NA	NA	NA	NA	283	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGTAGAGCAATTTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	8146216	8144482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_8144500_8146200
ONT_simulated_read_12815861	chr2	-	1273	1	ISM	ENSMUSG00000005973.7	ENSMUST00000006128.7	2720	6	11314	442	11314	-442	mono-exon	FALSE	NA	NA	NA	NA	NA	1126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCACAGTAGTCCTGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	105218350	105217077	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_105217100_105218400
ONT_simulated_read_12818858	chr18	+	606	1	FSM	ENSMUSG00000071867.6	ENSMUST00000096579.6	447	1	0	-159	0	159	mono-exon	FALSE	NA	NA	NA	NA	NA	389	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATTCCCATCAACCATAT	NA	NA	NA	NA	NA	NA	NA	NA	15144302	15144908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_15144300_15144900
ONT_simulated_read_12819341	chr3	-	1083	1	ISM	ENSMUSG00000045031.19	ENSMUST00000071400.13	1808	4	3273	342	3247	-342	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCATGACACAAGACAGCT	NA	NA	NA	NA	NA	NA	NA	NA	37363322	37362239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_37362200_37363300
ONT_simulated_read_12819464	chr8	-	685	5	ISM	ENSMUSG00000035569.18	ENST00000613312.4	1555	8	133220	994	7185	-994	internal_fragment	TRUE	canonical	NA	NA	NA	NA	330	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCTCAACAAAGCAACAGAA	NA	NA	NA	NA	NA	NA	NA	NA	123635541	123623414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123623447_123625312_123625456_123626342_123626547_123626717_123626889_123635406
ONT_simulated_read_12819598	chr3	+	1621	12	ISM	ENSMUSG00000027722.15	ENSMUST00000029277.13	2890	16	11760	302	11746	-302	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACATTAAAGCTGACTGC	NA	NA	NA	NA	NA	NA	NA	NA	37486206	37632943	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37632900
ONT_simulated_read_12823661	chrX	-	573	1	ISM	ENSMUSG00000067369.13	ENSMUST00000087541.12	3119	13	52288	1027	42819	421	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAACTGAGGTTGACTTC	NA	NA	NA	NA	NA	NA	NA	NA	133125443	133124870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_133124900_133125400
ONT_simulated_read_12824137	chr5	-	353	1	ISM	ENSMUSG00000029334.15	ENSMUST00000162619.8	1308	5	11743	469	11743	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	312	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAATCCTTTTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	99079948	99079595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_99079600_99079900
ONT_simulated_read_12824825	chr13	-	776	8	ISM	ENSMUSG00000021460.18	ENSMUST00000021913.16	1320	10	10572	270	10452	-270	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAGTGGGTTCTCACTA	NA	NA	NA	NA	NA	NA	NA	NA	53073125	52989424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53041276_53041334_53043138_53043232_53052685_53052773_53073036
ONT_simulated_read_12825226	chr2	-	528	4	ISM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	8653	8974	8206	-8974	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAACAAAAGCTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	5008949	5004508	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_5004592_5005670_5005868_5006074_5006192_5008818
ONT_simulated_read_12828121	chr8	-	1053	1	ISM	ENSMUSG00000031984.9	ENSMUST00000034465.9	2340	7	23171	409	23171	-409	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTGCTCACCACACACA	NA	NA	NA	NA	NA	NA	NA	NA	125566688	125565635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_125565600_125566700
ONT_simulated_read_12829651	chr17	+	1499	9	ISM	ENSMUSG00000024151.14	ENSMUST00000024967.14	3283	16	24211	196	24211	-196	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCGTGCACGGGGGAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	88003968	88030945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
ONT_simulated_read_12831051	chr7	-	2179	1	ISM	ENSMUSG00000066571.14	ENSMUST00000108074.8	6224	14	74364	302	46412	-295	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTGTGACCGTGTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	33938612	33936433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_33936400_33938600
ONT_simulated_read_1283628	chr7	+	1073	7	ISM	ENSMUSG00000030890.17	ENST00000528995.5	1483	10	3874	-4	3874	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCTCGTGTGGGGACAGA	NA	NA	NA	NA	NA	NA	NA	NA	105390178	105392129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105390251_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
ONT_simulated_read_12836346	chr10	+	763	6	ISM	ENSMUSG00000025354.6	ENSMUST00000219508.2	2298	7	1702	274	1702	-274	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGATTTCTTGAGCCGG	NA	NA	NA	NA	NA	NA	NA	NA	128643246	128653098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_128643490_128649906_128650014_128650434_128650555_128652580_128652742_128652826_128652930_128653069
ONT_simulated_read_12836640	chr3	+	1687	1	ISM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	25976	726	25518	-726	mono-exon	FALSE	NA	NA	NA	NA	NA	265	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTCACAGGTAGATTAAT	NA	NA	NA	NA	NA	NA	NA	NA	30872999	30874686	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_30873000_30874700
ONT_simulated_read_12839979	chr7	-	393	1	NIC	ENSMUSG00000003444.9	novel	1281	4	NA	NA	5667	34	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCACACCACTGTTGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	28086450	28086057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_28086100_28086400
ONT_simulated_read_12842234	chr9	-	1071	6	ISM	ENSMUSG00000032175.12	ENSMUST00000214454.2	4770	25	6718	12106	-384	7283	internal_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGCACCGCCTGATCC	NA	NA	NA	NA	NA	NA	NA	NA	21035821	21027471	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21027538_21031555_21031714_21031798_21032000_21032687_21033055_21035272_21035437_21035706
ONT_simulated_read_12843217	chr6	-	477	1	ISM	ENSMUSG00000042042.15	ENSMUST00000049344.15	3661	8	29747	1465	29747	-1465	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTACTATAGTATGAAACA	NA	NA	NA	NA	NA	NA	NA	NA	118086354	118085877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_118085900_118086400
ONT_simulated_read_12843717	chr14	-	169	1	ISM	ENSMUSG00000002319.17	ENSMUST00000047131.16	3846	30	9661	455	9661	-455	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCTTACCAAAGACTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	55863480	55863311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55863300_55863500
ONT_simulated_read_12844155	chr14	-	1551	1	ISM	ENSMUSG00000039081.11	ENSMUST00000043409.9	4216	3	3088	1004	3088	-1004	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGGACCATACTACTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	22036581	22035030	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_22035000_22036600
ONT_simulated_read_12845539	chr6	-	210	2	ISM	ENSMUSG00000030243.17	ENSMUST00000111803.9	3389	15	10133	13515	10082	-13515	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAGATCAGCTGATGGTT	NA	NA	NA	NA	NA	NA	NA	NA	142322680	142320616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_142320653_142322506
ONT_simulated_read_1284640	chr1	-	1520	1	ISM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	40819	0	37126	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTAGTTTTGTTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	58503449	58501929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_58501900_58503400
ONT_simulated_read_12849771	chr17	+	644	7	ISM	ENSMUSG00000035842.11	ENSMUST00000224497.2	4141	27	20096	2891	20096	-2884	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGATCAATTTCTCTGATG	NA	NA	NA	NA	NA	NA	NA	NA	66450703	66456278	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456207
ONT_simulated_read_12850153	chr3	-	1591	8	ISM	ENSMUSG00000040774.16	ENSMUST00000039153.14	2020	9	8152	353	8003	-353	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACTGGTGGTAAATCTAA	NA	NA	NA	NA	NA	NA	NA	NA	106446895	106410651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106427324_106427410_106438452_106438595_106440670_106440819_106446505
ONT_simulated_read_12852730	chr2	-	1612	1	ISM	ENSMUSG00000048486.7	ENSMUST00000109418.2	3967	2	2511	2128	2511	-2128	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATGTTCCCTCTCTTAGA	NA	NA	NA	NA	NA	NA	NA	NA	163312038	163310426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_163310400_163312000
ONT_simulated_read_12853703	chr5	-	407	1	ISM	ENSMUSG00000029012.12	ENSMUST00000030872.12	2103	14	63176	304	63176	-304	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCCTTTTCACTTCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	22692197	22691790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_22691800_22692200
ONT_simulated_read_12854004	chr16	-	224	2	ISM	ENSMUSG00000033177.14	ENST00000419127.5	2224	15	2865	24317	2865	-24317	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTCCGCAACCTCGGG	NA	NA	NA	NA	NA	NA	NA	NA	45503939	45501055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_45501112_45503771
ONT_simulated_read_12855295	chr17	-	1527	5	ISM	ENSMUSG00000013236.18	ENSMUST00000086828.10	5608	29	47183	2	47183	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTAGTGCATGGAGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	56722033	56719432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884
ONT_simulated_read_12855450	chr5	-	1134	1	ISM	ENSMUSG00000023452.20	ENSMUST00000061895.16	2183	8	48212	0	5041	0	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTAGCTTTGTATTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	32894778	32893644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_32893600_32894800
ONT_simulated_read_12859911	chr13	-	863	4	ISM	ENSMUSG00000097715.3	ENSMUST00000220647.2	1159	7	28788	-356	28788	-325	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	484	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAATTCACTTTAAAACGT	NA	NA	NA	NA	NA	NA	NA	NA	12636387	12630270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_12630739_12632613_12632739_12634654_12634784_12636246
ONT_simulated_read_12859921	chr13	-	1156	1	ISM	ENSMUSG00000113170.2	ENSMUST00000222088.2	2093	2	902	863	902	-863	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCCAGCGCTTGGGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	35058513	35057357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_35057400_35058500
ONT_simulated_read_12863564	chr16	+	2314	11	ISM	ENSMUSG00000022770.18	ENSMUST00000115196.8	3418	23	83809	-949	83376	-86	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	216	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTCTTTGGAACTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	31656976	31692028	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_31657045_31661587_31661658_31666453_31666488_31672660_31672703_31673470_31673507_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ONT_simulated_read_12863576	chr8	-	540	6	ISM	ENSMUSG00000031502.12	ENSMUST00000033898.10	6615	52	94775	15224	94775	-15224	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAATTCCTGGAGTCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	11268051	11263646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_11263690_11264651_11264703_11266700_11266800_11267264_11267346_11267433_11267561_11267912
ONT_simulated_read_12863960	chr8	+	1239	8	ISM	ENSMUSG00000025812.19	ENSMUST00000160766.8	4949	23	241696	223375	0	-13464	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGGGCTTGGTGTCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	128032790	128115076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_128032990_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128114990
ONT_simulated_read_12864944	chr17	+	864	7	ISM	ENSMUSG00000024193.9	ENSMUST00000073724.7	2522	15	2870	404	2462	-384	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCGGCCTGACGGCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	27154895	27156478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_27155017_27155097_27155166_27155260_27155366_27155485_27155655_27155744_27155840_27156027_27156109_27156253
ONT_simulated_read_12866306	chr2	+	460	4	ISM	ENSMUSG00000079442.13	ENSMUST00000102818.11	3626	6	0	5669	0	-5046	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTCTGGCCAGATGCTG	NA	NA	NA	NA	NA	NA	NA	NA	32477106	32484041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_32477240_32477592_32477694_32479456_32479643_32484001
ONT_simulated_read_12868413	chr7	+	945	9	ISM	ENSMUSG00000030769.16	ENST00000565769.5	2056	15	12	12650	0	-12650	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGAACCTGTCTCATGCC	NA	NA	NA	NA	NA	NA	NA	NA	122814035	122859754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_122814221_122837346_122837419_122838591_122838697_122839961_122840022_122847160_122847266_122849293_122849400_122851635_122851717_122857576_122857783_122859729
ONT_simulated_read_12869062	chr5	-	685	1	ISM	ENSMUSG00000037235.14	ENSMUST00000042701.13	3872	6	10572	2567	10572	125	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTCTGTCTATCCATCTA	NA	NA	NA	NA	NA	NA	NA	NA	34334482	34333797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_34333800_34334500
ONT_simulated_read_12871190	chr10	+	334	4	ISM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	102	5821	19	-4358	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTGCTGCTACTGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	77417655	77428745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_77417762_77423084_77423138_77425467_77425577_77428679
ONT_simulated_read_12873293	chr2	-	285	1	FSM	ENSMUSG00000083832.2	ENSMUST00000117988.2	238	1	0	-47	0	47	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCAACAGTGAATGCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	91472267	91471982	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_91472000_91472300
ONT_simulated_read_12875232	chr8	-	351	3	ISM	ENSMUSG00000037993.9	ENST00000268482.8	4086	26	11171	291	11171	-291	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGTGTTCATCTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	110278246	110274938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_110275116_110276405_110276528_110278194
ONT_simulated_read_12875391	chr13	-	435	1	ISM	ENSMUSG00000021758.15	ENSMUST00000075748.7	2762	21	53277	257	53277	-252	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTAATTATTGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	112735558	112735123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_112735100_112735600
ONT_simulated_read_12878749	chr14	+	616	3	ISM	ENSMUSG00000036291.7	ENSMUST00000037473.6	6321	8	14510	4241	14509	3828	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGAGAGAAACAGTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	49318461	49324095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_49318587_49321315_49321413_49323701
ONT_simulated_read_12882299	chr1	-	2637	1	ISM	ENSMUSG00000037503.13	ENSMUST00000167518.8	5058	8	25675	1520	25589	-1513	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGACATCGTTGTTAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	34856456	34853819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_34853800_34856500
ONT_simulated_read_12885957	chr7	-	341	3	NNC	ENSMUSG00000003099.12	novel	1878	12	NA	NA	12281	-3960	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCTCAGCACTATCCCA	NA	NA	NA	NA	NA	NA	NA	NA	16749446	16742538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_16742634_16743799_16743922_16749322
ONT_simulated_read_12886806	chr11	-	3362	4	ISM	ENSMUSG00000020362.14	ENSMUST00000145353.8	5736	12	31434	1124	31421	-1124	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTTCTTAAAATGCATAAA	NA	NA	NA	NA	NA	NA	NA	NA	49572116	49563453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_49566233_49568126_49568330_49570747_49570979_49571967
ONT_simulated_read_12887629	chr18	+	2047	1	NIC	ENSMUSG00000103088.2	novel	2151	3	NA	NA	9359	-10384	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCGCACAGCGCGTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	37884652	37886699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_+_37884700_37886700
ONT_simulated_read_12887993	chr8	-	1546	3	ISM	ENSMUSG00000063253.12	ENSMUST00000212905.2	798	4	224	-853	1	-101	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATATGGATGTGTAATCC	NA	NA	NA	NA	NA	NA	NA	NA	84164651	84161245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_84162670_84164181_84164266_84164613
ONT_simulated_read_12888448	chr9	-	917	9	ISM	ENSMUSG00000032400.19	ENSMUST00000176299.8	1831	18	10147	12201	10147	-10290	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGACAAACTGAAGAAAGATT	NA	NA	NA	NA	NA	NA	NA	NA	64070014	64057475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845
ONT_simulated_read_12890698	chr9	+	1910	12	ISM	ENSMUSG00000006932.18	ENST00000441708.2	2475	15	877	375	877	-263	internal_fragment	FALSE	canonical	NA	NA	NA	NA	509	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCGTCCTTTAGGTAAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	120780154	120788583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
ONT_simulated_read_12891685	chr3	+	2178	10	ISM	ENSMUSG00000028101.19	ENSMUST00000107077.4	2695	15	3361	0	3361	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGGGGAAGGGATGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	96607793	96613289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
ONT_simulated_read_1289220	chr10	-	1407	5	ISM	ENSMUSG00000006736.10	ENSMUST00000060991.6	1556	6	750	0	750	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTCTTGTTTTCCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	126905383	126903148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_126904060_126904137_126904252_126904348_126904481_126904776_126904858_126905214
ONT_simulated_read_1289239	chr4	+	574	6	ISM	ENSMUSG00000036073.18	ENST00000556278.1	771	7	398	107	398	-107	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACACAGACTGGTCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	41755960	41764771	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_41756131_41756938_41756996_41757155_41757279_41763581_41763682_41763824_41763886_41764708
ONT_simulated_read_12892862	chr5	-	1754	10	ISM	ENSMUSG00000034826.15	ENSMUST00000038514.15	2352	12	4300	264	4300	-264	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCTTTTATATCTGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	92578778	92563662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573670_92575958_92576186_92578659
ONT_simulated_read_1289782	chr6	+	401	3	ISM	ENSMUSG00000029771.13	ENSMUST00000004392.12	2189	9	83	3240	0	-3240	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACATGCCACCTCAGCCGT	NA	NA	NA	NA	NA	NA	NA	NA	29526706	29534078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_29526774_29531124_29531331_29533950
ONT_simulated_read_12899125	chr5	-	953	1	ISM	ENSMUSG00000029722.16	ENSMUST00000031736.16	2893	12	32915	396	32869	-374	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAACAA	NA	NA	NA	NA	NA	NA	NA	NA	137650073	137649120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137649100_137650100
ONT_simulated_read_12899819	chr2	-	645	1	ISM	ENSMUSG00000026646.17	ENSMUST00000027956.9	4327	6	16345	2227	16274	-462	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAATTCTTAAAAGATTT	NA	NA	NA	NA	NA	NA	NA	NA	3459723	3459078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_3459100_3459700
ONT_simulated_read_12901744	chr1	-	1155	8	ISM	ENSMUSG00000026399.13	ENSMUST00000027650.13	2533	10	2971	1017	2971	-1017	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGTAGAAAATTTCCAGAC	NA	NA	NA	NA	NA	NA	NA	NA	130387510	130367780	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318
ONT_simulated_read_12905271	chr1	-	513	5	ISM	ENSMUSG00000026558.14	ENSMUST00000053686.9	4731	7	47679	4876	47679	-4876	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTCCTAGAGGTGCCGAC	NA	NA	NA	NA	NA	NA	NA	NA	167065210	167055327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057
ONT_simulated_read_12907523	chr7	-	2358	1	ISM	ENSMUSG00000087371.2	ENSMUST00000147449.2	2713	4	3047	0	3047	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	27204500	27202142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_27202100_27204500
ONT_simulated_read_12907922	chr1	-	3560	6	ISM	ENSMUSG00000026000.17	ENSMUST00000027149.12	4270	10	28818	198	28787	-198	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGACCAGGTTTCTGGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	67049206	67039873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069
ONT_simulated_read_12909910	chr13	-	302	1	ISM	ENSMUSG00000021557.16	ENSMUST00000022040.14	8174	26	107018	4250	94146	-282	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATATTATTAATTAATGA	NA	NA	NA	NA	NA	NA	NA	NA	59598107	59597805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_59597800_59598100
ONT_simulated_read_1291060	chr7	-	989	5	ISM	ENSMUSG00000058420.9	ENSMUST00000203485.3	1932	7	166	26308	163	-26308	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTGAGGAACGCTACA	NA	NA	NA	NA	NA	NA	NA	NA	118047279	118033245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_118033676_118036045_118036195_118041570_118041720_118042341_118042360_118047036
ONT_simulated_read_12910671	chr2	+	1035	7	ISM	ENSMUSG00000052155.6	ENST00000404590.1	2338	12	76129	530	76129	-530	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACGCAAGCAGCCCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	48780400	48789912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_48780454_48782140_48782285_48783518_48783665_48784677_48784793_48786983_48787123_48788489_48788621_48789605
ONT_simulated_read_12910687	chr10	-	693	1	ISM	ENSMUSG00000064181.7	ENSMUST00000020375.7	2690	10	43270	634	43270	359	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTCACGGAGAGACCACC	NA	NA	NA	NA	NA	NA	NA	NA	116743015	116742322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_116742300_116743000
ONT_simulated_read_12912184	chr5	+	261	1	FSM	ENSMUSG00000092510.2	ENSMUST00000172802.2	604	1	0	343	0	-343	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTTTGCACCCTCAGATG	NA	NA	NA	NA	NA	NA	NA	NA	25655302	25655563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_25655300_25655600
ONT_simulated_read_1291351	chr3	-	973	1	ISM	ENSMUSG00000048581.13	ENSMUST00000061706.7	1640	5	13757	59	13757	-59	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATATTTGACATTTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	63823136	63822163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_63822200_63823100
ONT_simulated_read_1291585	chr8	-	1863	7	ISM	ENSMUSG00000046707.10	ENSMUST00000056919.9	3773	12	27202	1097	27155	781	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACCACTTGCTCTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	96188253	96173820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_96175047_96179977_96180072_96182485_96182635_96184015_96184117_96186699_96186802_96187305_96187417_96188173
ONT_simulated_read_12923505	chr10	+	579	1	Antisense	novelGene_ENSMUSG00000000901.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAAGAGAAGGACATCAG	NA	NA	NA	NA	NA	NA	NA	NA	75759371	75759950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr10_+_75759400_75760000
ONT_simulated_read_12924355	chr3	-	678	1	NIC	ENSMUSG00000040774.16	novel	2814	9	NA	NA	43837	-85	mono-exon	FALSE	NA	NA	NA	NA	NA	269	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGGGAAATCTTGATAGC	NA	NA	NA	NA	NA	NA	NA	NA	106411061	106410383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_106410400_106411100
ONT_simulated_read_12924398	chr15	-	1267	4	ISM	ENSMUSG00000013846.11	ENSMUST00000092640.6	4985	6	-358	6731	-358	-3321	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGAGGCAGCTTGGGACC	NA	NA	NA	NA	NA	NA	NA	NA	66986199	66981454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_66981501_66983080_66983261_66984279_66984477_66985355
ONT_simulated_read_12924972	chr2	+	958	1	FSM	ENSMUSG00000082274.2	ENSMUST00000120625.2	1789	1	0	831	0	-831	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTTGTGATCCACAGT	NA	NA	NA	NA	NA	NA	NA	NA	129010619	129011577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_129010600_129011600
ONT_simulated_read_12930897	chr2	+	630	7	FSM	ENSMUSG00000027236.9	ENST00000535391.5	937	7	-10	317	-10	-317	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACTTCATGTGACACTT	NA	NA	NA	NA	NA	NA	NA	NA	121859132	121882564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_121859206_121859288_121859393_121871636_121871692_121872062_121872155_121877916_121878032_121882222_121882297_121882447
ONT_simulated_read_12933086	chr19	-	838	1	ISM	ENSMUSG00000024758.16	ENSMUST00000088169.7	2762	7	55327	1137	55271	-55	mono-exon	FALSE	NA	NA	NA	NA	NA	433	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTCTTATTATGAAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	7405240	7404402	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_7404400_7405200
ONT_simulated_read_12934730	chr1	-	653	4	ISM	ENSMUSG00000060771.16	ENSMUST00000114902.8	2724	18	53474	653	53474	-653	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTGGACATTACCAAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	37840981	37800556	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_37800616_37802387_37802591_37822897_37823108_37840800
ONT_simulated_read_12935488	chr8	+	822	6	ISM	ENSMUSG00000031657.17	ENSMUST00000121949.2	3086	15	19209	935	19209	-935	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTGAGGAAAAAGGAGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	88883692	88897690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_88883764_88884756_88884894_88888505_88888595_88891515_88891660_88893623_88893801_88897486
ONT_simulated_read_12936002	chr15	-	137	1	ISM	ENSMUSG00000047394.10	ENSMUST00000049968.9	1040	5	1382	287	1053	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGTGGTCTGGAGTCGAG	NA	NA	NA	NA	NA	NA	NA	NA	89262075	89261938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_89261900_89262100
ONT_simulated_read_12937086	chr7	-	2136	1	ISM	ENSMUSG00000038886.11	ENSMUST00000098346.5	6554	24	19529	614	17882	-614	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCTGGCCTTGAACTCAG	NA	NA	NA	NA	NA	NA	NA	NA	80001594	79999458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_79999500_80001600
ONT_simulated_read_12940369	chr9	-	1500	12	ISM	ENSMUSG00000032570.18	ENST00000359644.7	3104	27	59367	34	34969	-34	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGATAATGCAACCCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	105312378	105280594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_105280783_105290263_105290389_105291832_105291975_105295248_105295345_105295742_105295891_105297380_105297498_105298772_105298842_105300141_105300309_105301368_105301420_105308693_105308792_105309852_105310024_105312250
ONT_simulated_read_12942742	chr5	-	820	2	ISM	ENSMUSG00000005057.14	ENSMUST00000196447.2	1783	6	12470	3595	12470	-3595	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGTAGCTGACTTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	136261221	136256217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_136256323_136260506
ONT_simulated_read_12942792	chr14	-	514	1	ISM	ENSMUSG00000021273.12	ENSMUST00000238526.2	3048	7	17993	1269	17993	-1266	mono-exon	FALSE	NA	NA	NA	NA	NA	217	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAATGAAAGCAACTGG	NA	NA	NA	NA	NA	NA	NA	NA	63384381	63383867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_63383900_63384400
ONT_simulated_read_12944978	chr17	-	1466	9	ISM	ENSMUSG00000023942.16	ENSMUST00000163492.8	2216	12	2754	69	2441	-66	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTATACTGACAGAAACC	NA	NA	NA	NA	NA	NA	NA	NA	45900747	45896194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606
ONT_simulated_read_12946836	chr11	+	2877	22	ISM	ENSMUSG00000020290.15	ENSMUST00000102870.8	3471	26	534	2397	90	-2397	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAAACTTATTTTTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	23206588	23243836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771
ONT_simulated_read_12948505	chr8	-	896	6	ISM	ENSMUSG00000031774.9	ENSMUST00000034226.8	2873	8	13114	1349	13114	-1349	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCGGCTTGATTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	95315511	95302114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403
ONT_simulated_read_12949520	chr8	-	679	8	ISM	ENSMUSG00000037260.9	ENSMUST00000037609.8	2694	18	8321	10225	8321	-10225	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACCATTCTGACGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	26458460	26444705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26444756_26445701_26445818_26447217_26447379_26449610_26449642_26450853_26450931_26453382_26453487_26454821_26454892_26458390
ONT_simulated_read_12949603	chr5	+	832	2	ISM	ENSMUSG00000034981.10	ENSMUST00000040576.10	5068	4	0	32588	0	-32588	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAGCTCCAATGGCACCT	NA	NA	NA	NA	NA	NA	NA	NA	91665473	91742165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_91665817_91741676
ONT_simulated_read_12952131	chr14	-	607	7	ISM	ENSMUSG00000033885.16	ENST00000383715.8	1659	17	24113	18615	24089	-18615	internal_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGAAAACCCAGGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	14347429	14328291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380
ONT_simulated_read_12953956	chr6	-	998	1	ISM	ENSMUSG00000030222.14	ENSMUST00000032347.11	2075	5	113987	688	113175	586	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATACCCTATTCTATTATT	NA	NA	NA	NA	NA	NA	NA	NA	137033508	137032510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_137032500_137033500
ONT_simulated_read_12954680	chr11	-	340	3	ISM	ENSMUSG00000020774.10	ENSMUST00000021119.9	1530	6	2368	8561	2368	-8561	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATAAAACATGCTCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	73213092	73204378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_73204444_73210620_73210715_73212911
ONT_simulated_read_12956471	chr13	-	1699	13	NIC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	431	-116	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGGAGGAAAGTAATAGTC	NA	NA	NA	NA	NA	NA	NA	NA	58547805	58539879	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706
ONT_simulated_read_12956530	chr4	-	361	2	ISM	ENSMUSG00000028670.15	ENST00000374503.7	793	9	1637	69	1637	-69	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCAGGCCTTCTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	135696615	135696178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_135696379_135696454
ONT_simulated_read_12956611	chr7	+	550	4	ISM	ENSMUSG00000030802.15	ENSMUST00000071056.14	3405	12	21	4801	21	-3188	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGGGCTTCCGTAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	127503274	127504592	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_127503342_127503934_127504298_127504393_127504463_127504541
ONT_simulated_read_12956778	chr3	-	730	1	ISM	ENSMUSG00000028064.18	ENSMUST00000029700.12	3205	15	18504	547	15885	-536	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACATTGGGCTGTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	88344542	88343812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_88343800_88344500
ONT_simulated_read_12956950	chr8	-	1885	1	ISM	ENSMUSG00000031983.8	ENSMUST00000034464.8	3307	4	25408	321	25408	-321	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGGGAGGCAGCTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	125364700	125362815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_125362800_125364700
ONT_simulated_read_12958941	chr14	-	928	6	ISM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	6706	778	6706	-778	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GATTCAAAGAAAAAAAGATC	NA	NA	NA	NA	NA	NA	NA	NA	66064737	66057264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616
ONT_simulated_read_12959443	chr14	-	381	7	ISM	ENSMUSG00000021820.19	ENST00000322635.7	3689	21	38394	2574	38280	-685	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGATTGGGGAGGACGCAG	NA	NA	NA	NA	NA	NA	NA	NA	20805754	20787516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20797886_20797920_20805726
ONT_simulated_read_12961508	chr9	-	1744	17	NIC	ENSMUSG00000032422.19	novel	2676	25	NA	NA	15554	-5060	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGAACTCGAATCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	88289518	88263893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_88263938_88264130_88264255_88265811_88265932_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88282775_88282803_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378
ONT_simulated_read_12963642	chr5	+	1177	1	ISM	ENSMUSG00000025340.15	ENSMUST00000119797.8	2690	9	41368	0	26005	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTTTTGTTTTGTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	130242006	130243183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_130242000_130243200
ONT_simulated_read_12965563	chr14	-	174	1	ISM	ENSMUSG00000022097.5	ENST00000520605.5	455	4	2933	0	2933	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1961	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTGGCGCTTCTTTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	70758554	70758380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_70758400_70758600
ONT_simulated_read_12969295	chr4	-	593	1	ISM	ENSMUSG00000041135.16	ENSMUST00000037035.12	2692	11	39800	522	39800	-522	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCACCTTCTCTGCGGA	NA	NA	NA	NA	NA	NA	NA	NA	16123847	16123254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_16123300_16123800
ONT_simulated_read_12969575	chr13	-	2330	8	ISM	ENSMUSG00000021196.15	ENSMUST00000138703.8	4145	22	49950	279	49898	-279	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACAGGTTGGAGTTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	6648863	6630082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774
ONT_simulated_read_12970186	chr1	-	931	6	ISM	ENSMUSG00000026365.16	ENST00000367429.9	3441	20	15311	30062	15311	-30062	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGGACATGGTTTAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	140075550	140046457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_140046502_140047608_140047792_140063884_140064062_140064433_140064629_140071668_140071843_140075392
ONT_simulated_read_12971116	chr15	-	206	1	ISM	ENSMUSG00000022323.12	ENSMUST00000022946.6	1004	6	10720	309	10720	-309	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAGATTATTCAGTATAG	NA	NA	NA	NA	NA	NA	NA	NA	34484681	34484475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_34484500_34484700
ONT_simulated_read_12971593	chr11	-	125	1	ISM	ENSMUSG00000043284.13	ENSMUST00000168218.8	1511	3	13730	732	13730	-732	mono-exon	FALSE	NA	NA	NA	NA	NA	696	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTAGGCAATTGCCTGCACA	NA	NA	NA	NA	NA	NA	NA	NA	60756134	60756009	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_60756000_60756100
ONT_simulated_read_12971694	chr1	+	1173	10	ISM	ENSMUSG00000073664.12	ENST00000683969.1	8481	56	103345	18809	103336	-18809	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTGATTTCTGGCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	60323093	60351346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_60323283_60326469_60326601_60329073_60329184_60330992_60331111_60332025_60332124_60335037_60335155_60344433_60344524_60349362_60349473_60350085_60350259_60351309
ONT_simulated_read_12971973	chr10	-	613	7	ISM	ENSMUSG00000004937.7	ENSMUST00000218208.2	1964	12	10852	841	10841	-841	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTAAGACGGACTCGTCC	NA	NA	NA	NA	NA	NA	NA	NA	80885160	80880751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086
ONT_simulated_read_12973921	chr1	-	755	1	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	53034	3278	48140	-3278	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAAAATCTTGCTAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	180918735	180917980	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_180918000_180918700
ONT_simulated_read_12975178	chr11	-	347	1	ISM	ENSMUSG00000016984.8	ENSMUST00000076661.7	4185	6	13568	1205	13568	-1205	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGCTATAAAGCTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	17890307	17889960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_17890000_17890300
ONT_simulated_read_12976163	chr11	-	1169	9	ISM	ENSMUSG00000020528.15	ENSMUST00000004955.14	1837	12	6600	312	6600	-312	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTAATTTTTATAACAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	61646288	61620791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235
ONT_simulated_read_12976684	chr12	+	1180	8	ISM	ENSMUSG00000012609.20	ENST00000554510.5	2386	15	23617	56226	23617	-56226	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCAGTCCTAGTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	85969781	86003410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_85969853_85972413_85972561_85973575_85973680_85976637_85976766_85979498_85979583_85980055_85980449_85986102_85986285_86003339
ONT_simulated_read_12977170	chr1	-	440	6	ISM	ENSMUSG00000057363.13	ENST00000283148.12	2033	15	62756	777	62756	-777	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTACCAGGCTAATAACCA	NA	NA	NA	NA	NA	NA	NA	NA	43804168	43789468	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43804049
ONT_simulated_read_12978065	chr18	+	1818	11	FSM	ENSMUSG00000024563.17	ENST00000262160.11	3459	11	-28	1669	-28	175	multi-exon	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATGCCCTCCCCAGCGG	NA	NA	NA	NA	NA	NA	NA	NA	76375116	76437976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_76375304_76395510_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
ONT_simulated_read_12980188	chr11	+	229	1	FSM	ENSMUSG00000053574.6	ENSMUST00000066087.5	2606	1	34	2343	34	-2343	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACATCGACTGTCCGCGTG	NA	NA	NA	NA	NA	NA	NA	NA	72105997	72106226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_72106000_72106200
ONT_simulated_read_1298218	chr8	+	905	8	ISM	ENSMUSG00000003808.19	ENSMUST00000109754.2	1795	13	3	1832	3	-1687	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGACCCACTCCCAGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	85583648	85594054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005
ONT_simulated_read_12982248	chr2	+	409	3	ISM	ENSMUSG00000036617.18	ENSMUST00000114604.9	4786	18	189741	66184	-13093	-1115	internal_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGCGCCATTTTGGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	20714342	20748512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_20714415_20718165_20718260_20748269
ONT_simulated_read_12983656	chr13	-	748	7	ISM	ENSMUSG00000021549.15	ENSMUST00000109552.3	4563	25	64733	1211	64733	-1211	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCACATTCCAGTGATGTG	NA	NA	NA	NA	NA	NA	NA	NA	85372415	85364109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_85364307_85364995_85365131_85366300_85366379_85367524_85367614_85369589_85369658_85371576_85371664_85372321
ONT_simulated_read_129856	chr4	-	512	5	ISM	ENSMUSG00000028741.14	ENSMUST00000102503.10	1221	8	3488	239	3210	-229	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGGATGACAGCTGACT	NA	NA	NA	NA	NA	NA	NA	NA	139076399	139074984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_139075117_139075231_139075309_139075631_139075784_139075992_139076061_139076316
ONT_simulated_read_12986374	chr9	-	204	1	FSM	ENSMUSG00000094627.3	ENSMUST00000178676.3	273	1	0	69	0	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCAGAAAATGGAGATGC	NA	NA	NA	NA	NA	NA	NA	NA	22232673	22232469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_22232500_22232700
ONT_simulated_read_12990268	chr13	+	632	5	ISM	ENSMUSG00000054021.7	ENST00000681243.1	718	6	-36	9245	0	-783	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGTCCCGGTGGCCGAGT	NA	NA	NA	NA	NA	NA	NA	NA	43524185	43539032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_43524345_43525307_43525442_43530170_43530397_43533975_43534030_43538973
ONT_simulated_read_12990465	chr11	-	146	1	ISM	ENSMUSG00000020334.7	ENSMUST00000020586.7	2263	10	44434	388	44326	-373	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAGATCAGGAGTTCAAG	NA	NA	NA	NA	NA	NA	NA	NA	53874482	53874336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_53874300_53874500
ONT_simulated_read_12991650	chr16	-	551	1	NIC	ENSMUSG00000022820.5	novel	971	3	NA	NA	6733	0	mono-exon	FALSE	NA	NA	NA	NA	NA	600	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAAGCTGGAACGGGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	37468082	37467531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_37467500_37468100
ONT_simulated_read_12991763	chr1	-	384	1	ISM	ENSMUSG00000099913.2	ENSMUST00000144660.3	3142	7	4109	22668	4109	-22668	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTTCTGCCTGTAAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	53387717	53387333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_53387300_53387700
ONT_simulated_read_12994608	chr1	-	1174	1	ISM	ENSMUSG00000025993.11	ENSMUST00000027137.11	3370	8	15905	436	15905	-436	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGGCCGATGTGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	45948837	45947663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_45947700_45948800
ONT_simulated_read_1299897	chr2	-	506	1	ISM	ENSMUSG00000027107.4	ENSMUST00000028515.4	4386	9	14031	2587	14031	-2587	mono-exon	FALSE	NA	NA	NA	NA	NA	344	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATATGAGTGATCCGCCT	NA	NA	NA	NA	NA	NA	NA	NA	73396651	73396145	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_73396100_73396700
ONT_simulated_read_13001475	chr6	+	486	2	ISM	ENSMUSG00000046733.8	ENSMUST00000050104.8	2083	4	0	5803	0	-5803	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTTTCAACTTGATCAAGC	NA	NA	NA	NA	NA	NA	NA	NA	135042648	135055904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_135042774_135055543
ONT_simulated_read_13004870	chr7	+	644	2	ISM	ENSMUSG00000030727.13	ENSMUST00000106405.2	2279	12	15360	98	15360	-98	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTATTTGTCCGTAGGCAC	NA	NA	NA	NA	NA	NA	NA	NA	126043971	126044975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_126044109_126044468
ONT_simulated_read_13005668	chr17	+	1087	10	ISM	ENSMUSG00000024319.19	ENSMUST00000025178.17	3383	20	2245	4895	2245	-4895	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCCGCAACATTGCAGCGA	NA	NA	NA	NA	NA	NA	NA	NA	34177030	34181114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34177067_34177263_34177332_34177574_34177751_34178198_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040
ONT_simulated_read_13008243	chr11	-	595	3	ISM	ENSMUSG00000020530.15	ENSMUST00000100686.10	2275	14	34272	0	34178	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	199	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGACTACTGCGCCTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	84727294	84723797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_84724040_84725160_84725410_84727190
ONT_simulated_read_13011526	chr13	-	1209	1	ISM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	11122	499	11052	-499	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGCTCTAGAGGCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	14226951	14225742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_14225700_14227000
ONT_simulated_read_13012133	chr4	-	907	9	ISM	ENSMUSG00000029036.19	ENSMUST00000030903.12	2413	16	9500	670	9500	-670	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGGATGCCCGTGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	155836050	155825767	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893
ONT_simulated_read_1301496	chr11	-	1257	3	NIC	ENSMUSG00000020925.17	novel	2366	5	NA	NA	7426	-721	combination_of_known_splicesites	FALSE	non_canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGCATGTCCTACCTTT	NA	NA	NA	NA	NA	NA	NA	NA	102581134	102576234	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_102577323_102579626_102579688_102581026
ONT_simulated_read_13017167	chr13	-	1416	4	ISM	ENSMUSG00000094870.9	ENSMUST00000223813.2	2561	8	14291	523	13846	-523	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATGGGCAGTGTGACCT	NA	NA	NA	NA	NA	NA	NA	NA	120237977	120227850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627
ONT_simulated_read_13020522	chr9	-	617	3	ISM	ENSMUSG00000032332.18	ENSMUST00000121227.8	9953	65	26289	80458	26087	-80458	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCGGGGAAAGTCGTCAAC	NA	NA	NA	NA	NA	NA	NA	NA	79599713	79589498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_79589571_79591475_79591749_79599441
ONT_simulated_read_13020700	chrX	-	779	1	FSM	ENSMUSG00000067924.5	ENSMUST00000088778.5	1232	1	0	453	0	-453	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGCAAGATGGGCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	52672375	52671596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_52671600_52672400
ONT_simulated_read_13025808	chr7	+	896	7	ISM	ENSMUSG00000005566.15	ENSMUST00000005705.8	3245	17	4939	549	4529	-539	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCGTGCTCGCCTCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	12763017	12764413	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_12763052_12763133_12763180_12763269_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381
ONT_simulated_read_13031345	chr14	-	1329	1	ISM	ENSMUSG00000055639.17	ENSMUST00000071533.13	5219	12	379953	1409	379953	-1402	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCGTTTTCATATTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	98027026	98025697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_98025700_98027000
ONT_simulated_read_1303885	chr2	-	1163	10	ISM	ENSMUSG00000039671.19	ENST00000352431.6	3394	21	8871	36608	0	-1331	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCAGTACCAAATGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	165717697	165670432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624
ONT_simulated_read_1303972	chr11	-	1127	5	ISM	ENSMUSG00000019761.11	ENST00000635956.2	2105	8	1995	90	-1269	-83	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTGGAGAAAAAAGAAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	99278192	99276175	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_99276463_99276736_99277096_99277356_99277575_99277823_99277950_99278055
ONT_simulated_read_13040566	chr13	-	193	1	ISM	ENSMUSG00000021650.8	ENSMUST00000022153.8	1704	10	24345	521	23047	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2636	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTCCATTTCCCTGGTC	NA	NA	NA	NA	NA	NA	NA	NA	99456868	99456675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_99456700_99456900
ONT_simulated_read_1304121	chr1	-	380	1	NIC	ENSMUSG00000040843.11	novel	4380	7	NA	NA	21062	-3216	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTCTCATGAGGGGACAT	NA	NA	NA	NA	NA	NA	NA	NA	165043450	165043070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_165043100_165043400
ONT_simulated_read_1304266	chr10	-	1079	4	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	106873	2043	106873	-2043	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGATAAAAATGGCTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	75493277	75483988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_75484056_75488708_75488977_75491199_75491275_75492608
ONT_simulated_read_13043584	chr7	+	933	9	ISM	ENSMUSG00000039361.12	ENST00000630913.2	2246	19	92	31474	0	-31474	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTGGATGAAAGGGAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	89779723	89825545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_89779911_89809655_89809799_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486
ONT_simulated_read_13044761	chr16	+	1395	1	FSM	ENSMUSG00000083405.2	ENSMUST00000119947.2	1090	1	0	-305	0	305	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCCTCACCCTCCCAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	37702903	37704298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_37702900_37704300
ONT_simulated_read_13045827	chr10	-	763	1	ISM	ENSMUSG00000062931.16	ENSMUST00000041264.15	2035	4	14722	939	14722	-939	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGTAATGGTAATCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	82062385	82061622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_82061600_82062400
ONT_simulated_read_13046224	chr14	-	3125	5	ISM	ENSMUSG00000021891.9	ENSMUST00000055303.5	3946	6	1075	683	1043	-683	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	245	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTCAAGTTGACACAAAA	NA	NA	NA	NA	NA	NA	NA	NA	31215922	31199459	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_31201768_31204747_31204890_31209527_31209699_31214278_31214414_31215553
ONT_simulated_read_13047021	chr4	-	615	4	ISM	ENSMUSG00000028955.4	ENSMUST00000030797.4	2120	5	1710	1425	1710	-1425	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTCCAGGAAGGGGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	151140700	151133181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_151133504_151134451_151134504_151135373_151135533_151140618
ONT_simulated_read_13047707	chr7	-	269	2	ISM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	14879	231	14879	-231	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATTACAAGATCAAGTAA	NA	NA	NA	NA	NA	NA	NA	NA	64027137	64026505	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_64026553_64026915
ONT_simulated_read_13048031	chr14	-	261	1	ISM	ENSMUSG00000021892.15	ENSMUST00000100730.10	2633	8	42495	1137	42495	-1137	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCAATAATCATTTAACATA	NA	NA	NA	NA	NA	NA	NA	NA	31097139	31096878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_31096900_31097100
ONT_simulated_read_13049089	chr2	-	4724	12	ISM	ENSMUSG00000027288.17	ENSMUST00000171215.8	6391	19	4206	6373	4187	-6373	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCGTGATGCACGGAACG	NA	NA	NA	NA	NA	NA	NA	NA	120366135	120346467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120363991
ONT_simulated_read_1305019	chr11	+	1653	6	ISM	ENSMUSG00000018809.3	ENSMUST00000044530.3	3517	11	51176	0	51176	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGTATTGGTTTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	75290434	75296531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
ONT_simulated_read_13051627	chr9	-	1322	1	FSM	ENSMUSG00000110945.2	ENSMUST00000217077.2	2578	1	213	1043	213	-1043	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTGCTTAGCAGTTAGGC	NA	NA	NA	NA	NA	NA	NA	NA	122850424	122849102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_122849100_122850400
ONT_simulated_read_13051844	chr14	+	532	7	ISM	ENSMUSG00000022035.7	ENSMUST00000022614.7	2230	9	58	9827	58	-117	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGAGAAGGAAGGCAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	66074808	66094229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_66074934_66077896_66077945_66083744_66083785_66089065_66089118_66091550_66091627_66093872_66093977_66094142
ONT_simulated_read_13052080	chr4	+	307	3	ISM	ENSMUSG00000029063.17	ENSMUST00000105613.10	3152	12	208	11661	208	-11657	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGACAACATTTGGACCAA	NA	NA	NA	NA	NA	NA	NA	NA	155648364	155663797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155648437_155661449_155661655_155663767
ONT_simulated_read_13055886	chr1	-	344	2	ISM	ENSMUSG00000041926.16	ENSMUST00000074357.8	2171	10	6567	8838	6567	-8838	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCTCCACCATCCTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	135205255	135199287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_135199503_135205126
ONT_simulated_read_1305690	chr6	+	326	2	ISM	ENSMUSG00000038115.17	ENST00000682330.1	3232	24	62	327448	62	-327448	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGATGTTGAACTTGGG	NA	NA	NA	NA	NA	NA	NA	NA	125687588	125689294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_125687704_125689083
ONT_simulated_read_13057104	chr16	-	1709	19	NNC	ENSMUSG00000022771.18	novel	2333	21	NA	NA	3989	314	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGGCTGACAGCTTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	16925088	16904865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909731_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042
ONT_simulated_read_1305988	chr6	+	584	3	ISM	ENSMUSG00000042447.14	ENSMUST00000040017.8	3710	12	0	21174	0	-20499	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTCAAAGATTTGATAGGA	NA	NA	NA	NA	NA	NA	NA	NA	8209221	8215100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_8209412_8211579_8211639_8214765
ONT_simulated_read_13060928	chr6	+	1074	9	ISM	ENSMUSG00000029777.11	ENSMUST00000003572.10	2380	17	0	16372	0	-16372	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	136	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACTGAGAAAGACCATCCC	NA	NA	NA	NA	NA	NA	NA	NA	55014991	55040113	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_55015219_55023398_55023501_55025051_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075
ONT_simulated_read_13065833	chr17	-	1055	1	ISM	ENSMUSG00000023927.16	ENSMUST00000144331.8	6243	11	92287	3144	70534	121	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTGTTTTTTTATTTTG	NA	NA	NA	NA	NA	NA	NA	NA	52047413	52046358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_52046400_52047400
ONT_simulated_read_13067087	chr5	-	507	5	ISM	ENSMUSG00000040473.16	ENSMUST00000135252.3	2188	16	38304	23707	31922	-23707	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACCTATGTGAAAAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	5675928	5667352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_5667386_5668947_5669070_5669166_5669216_5671919_5672044_5675749
ONT_simulated_read_13067940	chr1	-	2895	4	ISM	ENSMUSG00000026102.10	ENST00000322522.8	1836	6	20806	-1707	20619	1707	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGACCCATGATGGGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	52836228	52826886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_52829377_52830846_52831022_52833628_52833830_52836199
ONT_simulated_read_13068047	chr11	+	519	1	FSM	ENSMUSG00000086688.5	ENSMUST00000117567.2	948	1	0	429	0	-429	mono-exon	FALSE	NA	NA	NA	NA	NA	629	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATGCCAGCCCTATCGCA	NA	NA	NA	NA	NA	NA	NA	NA	99822987	99823506	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_99823000_99823500
ONT_simulated_read_13069076	chr17	-	354	1	ISM	ENSMUSG00000062012.15	ENSMUST00000115516.11	2104	6	9136	899	9136	-891	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGTACGCACACGGGCGAG	NA	NA	NA	NA	NA	NA	NA	NA	23796070	23795716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_23795700_23796100
ONT_simulated_read_13070290	chr5	+	2594	6	NIC	ENSMUSG00000029440.16	novel	2597	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCCTCTTGGGATCAGC	NA	NA	NA	NA	NA	NA	NA	NA	123366252	123388194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_+_123366508_123372656_123372760_123377604_123377814_123379894_123379997_123384259_123384346_123386355
ONT_simulated_read_13070821	chr7	-	442	1	ISM	ENSMUSG00000048330.15	ENSMUST00000055993.13	5281	6	44448	4130	44403	2	mono-exon	FALSE	NA	NA	NA	NA	NA	372	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCCTGCTTGGGAAAGTA	NA	NA	NA	NA	NA	NA	NA	NA	108638090	108637648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_108637600_108638100
ONT_simulated_read_13073593	chr15	-	1695	1	ISM	ENSMUSG00000036046.15	ENSMUST00000047144.13	6845	10	38747	3623	38718	-1839	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGGGGAAATATATCTTA	NA	NA	NA	NA	NA	NA	NA	NA	84833454	84831759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_84831800_84833500
ONT_simulated_read_13078154	chr16	+	799	7	ISM	ENSMUSG00000022721.20	ENSMUST00000100099.10	2235	12	2360	182	2360	-182	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAGGGAAGTATAGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	18069285	18071184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ONT_simulated_read_13082051	chr17	+	697	6	ISM	ENSMUSG00000024392.18	ENST00000375976.8	3482	24	10	6941	10	-6933	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAATGGAGGAACGTC	NA	NA	NA	NA	NA	NA	NA	NA	35355098	35359348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208
ONT_simulated_read_13082570	chr18	-	170	1	ISM	ENSMUSG00000051375.16	ENSMUST00000160721.8	5416	5	8493	17477	6202	-6697	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTCATCTGTATAAACTA	NA	NA	NA	NA	NA	NA	NA	NA	38336613	38336443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_38336400_38336600
ONT_simulated_read_13082949	chr9	-	404	1	FSM	ENSMUSG00000051074.5	ENSMUST00000058992.3	652	1	19	229	0	-229	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACCTTCAGTTGGTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	98445645	98445241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_98445200_98445600
ONT_simulated_read_13084639	chr7	-	807	5	ISM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	4681	254	4681	-254	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATTCCCAACTCAAGAATT	NA	NA	NA	NA	NA	NA	NA	NA	139691708	139685876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608
ONT_simulated_read_13087409	chrX	+	2472	21	FSM	ENSMUSG00000031309.16	ENST00000457145.6	2777	21	19	286	19	-195	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCACCTAAAATACACTGAA	NA	NA	NA	NA	NA	NA	NA	NA	158086276	158146736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_158086397_158094459_158094577_158100916_158100999_158109836_158109918_158110767_158110848_158111366_158111474_158113553_158113592_158113782_158113926_158115146_158115218_158119690_158119780_158119958_158120024_158120181_158120285_158120913_158121039_158125580_158125707_158128335_158128426_158130011_158130171_158132247_158132410_158134359_158134437_158135311_158135430_158145637_158145779_158146358
ONT_simulated_read_13088076	chr12	-	1155	1	NIC	ENSMUSG00000113670.2	novel	1400	3	NA	NA	94	-5063	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGACCCACATGGTAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	23010213	23009058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_23009100_23010200
ONT_simulated_read_130882	chr15	-	1394	9	ISM	ENSMUSG00000022614.9	ENST00000474879.7	2227	14	1886	23	1886	-23	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCCAGCCACTGTGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	89237779	89235715	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659
ONT_simulated_read_1308854	chr9	+	1639	12	FSM	ENSMUSG00000032536.13	ENST00000449246.5	1971	12	41	291	41	-291	multi-exon	TRUE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTCGCTCACGCCCACCG	NA	NA	NA	NA	NA	NA	NA	NA	121232543	121283521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_121232871_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344
ONT_simulated_read_13088752	chr7	-	575	6	ISM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	9578	595	9578	-595	internal_fragment	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGTGAGGACGCCTACAC	NA	NA	NA	NA	NA	NA	NA	NA	45074469	45071916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374
ONT_simulated_read_13089445	chr6	-	1021	7	NNC	ENSMUSG00000039130.19	novel	1824	10	NA	NA	3470	-6323	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTCGAGCCCTCTCCGG	NA	NA	NA	NA	NA	NA	NA	NA	30387531	30372795	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_30372950_30373241_30373483_30374763_30374919_30375937_30376062_30381779_30381864_30382535_30382687_30387419
ONT_simulated_read_13092562	chr8	-	2288	1	FSM	ENSMUSG00000099142.3	ENSMUST00000184998.3	109	1	0	-2179	0	2179	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAGCACCCTGGAGAGTA	NA	NA	NA	NA	NA	NA	NA	NA	25649249	25646961	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_25647000_25649200
ONT_simulated_read_13092642	chr17	+	797	7	ISM	ENSMUSG00000071074.10	ENSMUST00000095263.10	2035	9	65	1387	65	-1387	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCTATAACATCCACCTT	NA	NA	NA	NA	NA	NA	NA	NA	46559070	46562076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039
ONT_simulated_read_13095108	chr2	-	227	1	NIC	ENSMUSG00000087496.2	novel	488	2	NA	NA	2020	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTCTTGGCTTAAAACT	NA	NA	NA	NA	NA	NA	NA	NA	32763993	32763766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_32763800_32764000
ONT_simulated_read_13095345	chr17	+	302	5	ISM	ENSMUSG00000024217.11	ENSMUST00000071006.9	758	6	48	3988	0	-3986	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCCCCCCACATGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	28059108	28066951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926
ONT_simulated_read_13095395	chr17	-	398	3	ISM	ENSMUSG00000024053.12	ENSMUST00000024849.11	3906	8	54955	679	54798	-668	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGACTGGGGGCAGACT	NA	NA	NA	NA	NA	NA	NA	NA	71563001	71559846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_71560089_71562113_71562243_71562974
ONT_simulated_read_13098358	chr19	-	2748	1	ISM	ENSMUSG00000071660.11	ENSMUST00000096751.11	3509	4	7511	0	7102	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATGCATCTTAGAAATT	NA	NA	NA	NA	NA	NA	NA	NA	8789186	8786438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_8786400_8789200
ONT_simulated_read_13099173	chr11	+	213	2	ISM	ENSMUSG00000020484.20	ENSMUST00000239150.2	1116	6	10	3303	10	-3004	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAGCGCAGACTGCTCGA	NA	NA	NA	NA	NA	NA	NA	NA	5471004	5471939	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_5471201_5471922
ONT_simulated_read_13100315	chr11	+	1293	3	ISM	ENSMUSG00000037533.21	ENSMUST00000239168.2	7131	18	65093	2525	65093	-219	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCGGAAAGGAGAACAAAGCG	NA	NA	NA	NA	NA	NA	NA	NA	54582257	54587586	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_54582567_54585095_54585399_54586905
ONT_simulated_read_13107697	chr19	+	323	4	ISM	ENSMUSG00000025036.8	ENSMUST00000026011.8	3205	12	9536	8599	9536	-8599	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGCGACAGCAGTGAGTA	NA	NA	NA	NA	NA	NA	NA	NA	46571341	46576735	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_46571417_46574143_46574243_46576373_46576450_46576662
ONT_simulated_read_13107991	chr3	+	710	8	ISM	ENSMUSG00000028161.18	ENST00000507176.5	1974	13	217158	628	217158	-626	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAACAAGGCTCTCGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	136593709	136640914	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_136593786_136596196_136596292_136608863_136608990_136611059_136611135_136627593_136627679_136634282_136634381_136637771_136637802_136640789
ONT_simulated_read_13110458	chr11	-	589	4	ISM	ENSMUSG00000020282.19	ENSMUST00000020524.15	2946	18	7179	4481	-686	-4259	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAGTCCCCATCAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	32165121	32164065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_32164110_32164181_32164305_32164392_32164603_32164909
ONT_simulated_read_13110676	chr9	+	678	2	NIC	ENSMUSG00000096736.2	novel	672	4	NA	NA	0	0	intron_retention	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTCCATGTCCTACAGT	NA	NA	NA	NA	NA	NA	NA	NA	3034598	3035805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_3035152_3035680
ONT_simulated_read_13110921	chr7	+	454	5	ISM	ENSMUSG00000042831.14	ENSMUST00000060834.12	982	7	0	1941	0	-1827	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCTGCCTGGGGAGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	30008141	30011788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661
ONT_simulated_read_13111467	chr2	-	390	5	ISM	ENSMUSG00000039826.14	ENSMUST00000177467.8	744	7	79	4365	79	-4365	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGAGAACCAGGGTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	29677555	29672133	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ONT_simulated_read_13112881	chr7	-	294	4	ISM	ENSMUSG00000025466.20	ENSMUST00000026539.14	685	6	1038	188	1000	-188	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGGACCCTCATAGAGACC	NA	NA	NA	NA	NA	NA	NA	NA	139681316	139679570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244
ONT_simulated_read_13113432	chr8	-	1061	1	ISM	ENSMUSG00000092260.8	ENSMUST00000130458.8	2291	4	6365	898	6365	420	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTCTTATTAGATGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	70196247	70195186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70195200_70196200
ONT_simulated_read_13116000	chr15	-	939	6	NIC	ENSMUSG00000022340.16	novel	3230	8	NA	NA	35	-5322	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGTAACATCCACCCTAGT	NA	NA	NA	NA	NA	NA	NA	NA	44651205	44541021	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_44541135_44546743_44546847_44582183_44582382_44609641_44609856_44611704_44611795_44650984
ONT_simulated_read_13117193	chr7	-	2997	1	ISM	ENSMUSG00000087088.3	ENSMUST00000208892.2	8508	2	6010	4392	5972	-4392	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCTGGCAGACCTTGGG	NA	NA	NA	NA	NA	NA	NA	NA	83275078	83272081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_83272100_83275100
ONT_simulated_read_13118848	chr3	-	769	4	ISM	ENSMUSG00000028108.17	ENSMUST00000029753.14	1895	11	3345	240	3345	-240	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAAGCAAATCAACTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	95643534	95641699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95641784_95642134_95642223_95642510_95642732_95643158
ONT_simulated_read_1312015	chr15	-	1739	7	ISM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	6322	530	6322	-530	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAAGTTACTTTGACATC	NA	NA	NA	NA	NA	NA	NA	NA	10479711	10475394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666
ONT_simulated_read_13123257	chr5	-	827	1	ISM	ENSMUSG00000029705.18	ENSMUST00000004097.16	12862	24	292428	7776	290392	264	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGACTCTAAACACACTAGT	NA	NA	NA	NA	NA	NA	NA	NA	136303871	136303044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_136303000_136303900
ONT_simulated_read_13123521	chr11	-	631	4	ISM	ENSMUSG00000025576.18	ENST00000583458.5	2636	12	113669	1178	113669	219	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	245	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGGGGGCTCCGGTATCT	NA	NA	NA	NA	NA	NA	NA	NA	118387357	118381761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_118382068_118384975_118385055_118386043_118386109_118387176
ONT_simulated_read_13124143	chr5	-	690	1	ISM	ENSMUSG00000045078.13	ENSMUST00000053498.13	4474	17	120045	1367	105496	-440	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTCTGTTGTTATCTAA	NA	NA	NA	NA	NA	NA	NA	NA	142978704	142978014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_142978000_142978700
ONT_simulated_read_13126193	chr9	+	207	1	ISM	ENSMUSG00000034487.5	ENSMUST00000037853.5	3642	8	16850	786	16850	-786	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATATCTGGCTTCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	53312174	53312381	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_53312200_53312400
ONT_simulated_read_13126601	chr7	-	462	4	ISM	ENSMUSG00000030605.16	ENSMUST00000107409.5	2008	9	3704	7998	3704	-7997	internal_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGCCTGAAGGTTAACAT	NA	NA	NA	NA	NA	NA	NA	NA	78795097	78791513	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_78791538_78792149_78792303_78792616_78792799_78794994
ONT_simulated_read_1313016	chr8	+	390	3	ISM	ENSMUSG00000006585.4	ENSMUST00000006760.3	2189	10	3777	504	3777	-504	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCACCACGTCCACGCCGA	NA	NA	NA	NA	NA	NA	NA	NA	123298530	123299363	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_123298588_123298675_123298878_123299232
ONT_simulated_read_13132105	chr7	-	3006	3	ISM	ENSMUSG00000043456.18	ENST00000355537.4	4810	4	28	8016	28	-972	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCGTCCATGGAGCTGAT	NA	NA	NA	NA	NA	NA	NA	NA	37269390	37179573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_37180275_37193110_37193264_37267238
ONT_simulated_read_13132313	chr7	+	349	4	ISM	ENSMUSG00000005566.15	ENST00000253024.10	3070	17	1438	2928	1196	-2928	internal_fragment	FALSE	canonical	NA	NA	NA	NA	202	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAAGCGGGGTCGAGTT	NA	NA	NA	NA	NA	NA	NA	NA	12759684	12762024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_12759704_12761543_12761680_12761759_12761877_12761947
ONT_simulated_read_13134213	chr12	-	1178	2	ISM	ENSMUSG00000042628.9	ENSMUST00000048319.6	4036	12	1904	28031	1796	-28031	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGGACACGGCTGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	83642092	83621653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_83621911_83641171
ONT_simulated_read_13134357	chr11	+	607	5	ISM	ENSMUSG00000018479.13	ENSMUST00000018623.4	966	6	0	2792	0	-51	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATCAGCGGCATGAAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	85061921	85069179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_85062054_85063659_85063762_85064013_85064190_85064842_85064943_85069082
ONT_simulated_read_13134557	chr8	-	988	6	ISM	ENSMUSG00000000759.15	ENSMUST00000000776.15	3797	22	39875	647	39875	-647	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTGGGACATCTTATTTC	NA	NA	NA	NA	NA	NA	NA	NA	12682373	12664923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237
ONT_simulated_read_13134728	chr17	-	946	5	ISM	ENSMUSG00000024002.19	ENST00000360016.9	2406	11	64439	0	63808	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGCTGATTCCTGTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	32439263	32430140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134
ONT_simulated_read_13137098	chr15	-	1331	10	ISM	ENSMUSG00000022570.8	ENSMUST00000229951.2	1405	11	677	0	677	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	75800898	75796524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798138_75798307_75798591_75798722_75798815_75798945_75800277_75800393_75800740
ONT_simulated_read_13138860	chr11	+	966	6	FSM	ENSMUSG00000038366.16	ENST00000433206.6	1259	6	59	234	0	-234	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCCATGGCATCACATCT	NA	NA	NA	NA	NA	NA	NA	NA	97690390	97727101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_97690689_97697650_97697746_97715667_97715776_97724371_97724529_97724909_97725014_97726897
ONT_simulated_read_13140869	chr17	-	137	1	ISM	ENSMUSG00000052142.16	ENSMUST00000063824.14	3681	17	6738	6050	6508	-4664	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGGCGTTGCCACCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	32615819	32615682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32615700_32615800
ONT_simulated_read_13142351	chr11	-	1435	9	ISM	ENSMUSG00000037935.17	ENSMUST00000103133.4	2919	11	2699	816	2150	27	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGATTAATCAAGACACCCA	NA	NA	NA	NA	NA	NA	NA	NA	99119144	99100688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99115863_99115969_99119100
ONT_simulated_read_13143307	chr6	-	1753	12	ISM	ENSMUSG00000038429.11	ENSMUST00000047510.10	3213	20	7527	313	7478	-294	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTGCTTCCTTCCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	124798920	124792294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795437_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848
ONT_simulated_read_13144755	chr11	-	1734	1	ISM	ENSMUSG00000086725.2	ENSMUST00000129876.2	2203	2	622	294	622	-294	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGTTAGACTGGGGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	29122936	29121202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_29121200_29122900
ONT_simulated_read_13144761	chr7	-	787	1	ISM	ENSMUSG00000074282.11	ENSMUST00000108436.8	2599	6	12774	1341	12774	-1249	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACAGTGAAGACAAACCGT	NA	NA	NA	NA	NA	NA	NA	NA	24003256	24002469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_24002500_24003300
ONT_simulated_read_13145219	chr10	+	2021	8	ISM	ENSMUSG00000006498.17	ENSMUST00000095457.11	2598	13	4982	0	701	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTCCCTGAGCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	79695483	79700193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ONT_simulated_read_13148258	chr10	-	586	4	ISM	ENSMUSG00000034758.13	ENSMUST00000142948.8	1961	14	6637	387	6619	-386	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCATGCCCACCGGAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	81430072	81427124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_81427171_81427719_81427874_81428546_81428689_81429828
ONT_simulated_read_13149778	chr10	-	1512	1	ISM	ENSMUSG00000020100.16	ENSMUST00000117513.8	5240	6	36300	2899	36300	-945	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTTGGGTTCACGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	60552261	60550749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_60550700_60552300
ONT_simulated_read_13150514	chr17	-	1185	1	NIC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	2266	-935	mono-exon	FALSE	NA	NA	NA	NA	NA	5584	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGGTGCCTGGCACATG	NA	NA	NA	NA	NA	NA	NA	NA	36146932	36145747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_36145700_36146900
ONT_simulated_read_13150934	chr7	+	665	5	ISM	ENSMUSG00000030616.17	ENSMUST00000190837.7	3757	19	27086	21543	-4861	-20651	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAATGTATACCAGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	90024992	90038104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_90025401_90028709_90028782_90034250_90034353_90036710_90036765_90038075
ONT_simulated_read_13151927	chr6	+	2184	11	ISM	ENSMUSG00000029869.8	ENSMUST00000114732.3	3762	18	7816	2290	652	-2283	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCCTGCGGCTGGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	41590231	41595153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_41590353_41590685_41590751_41591012_41591776_41592422_41592579_41592850_41593202_41593393_41593519_41593681_41593845_41594197_41594313_41594560_41594614_41594780_41594901_41595001
ONT_simulated_read_13154130	chr2	-	757	1	ISM	ENSMUSG00000036890.14	ENSMUST00000112810.8	2564	11	296109	345	190924	-335	mono-exon	FALSE	NA	NA	NA	NA	NA	535	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTGCATTGAATTAATCT	NA	NA	NA	NA	NA	NA	NA	NA	44455525	44454768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_44454800_44455500
ONT_simulated_read_13154295	chr4	-	1336	1	FSM	ENSMUSG00000052684.5	ENSMUST00000107094.2	3189	1	0	1853	0	-1853	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCACCTCCGCGGCACAG	NA	NA	NA	NA	NA	NA	NA	NA	94940459	94939123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_94939100_94940500
ONT_simulated_read_13154401	chr9	+	544	4	ISM	ENSMUSG00000032098.14	ENST00000397925.2	1549	13	2234	1283	2234	-1283	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGGGACAGTGGGCAGGC	NA	NA	NA	NA	NA	NA	NA	NA	44594592	44596023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_44594673_44594868_44594919_44595061_44595257_44595804
ONT_simulated_read_13155413	chr1	-	876	7	ISM	ENSMUSG00000025980.15	ENST00000678621.1	2268	10	3817	842	3817	-842	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	397	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGCAATGACGATTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	55122286	55117835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225
ONT_simulated_read_13158783	chr10	-	1966	17	ISM	ENSMUSG00000020115.4	ENSMUST00000020316.4	3024	21	14762	549	6697	-95	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAATACATATACATATAT	NA	NA	NA	NA	NA	NA	NA	NA	121407930	121382908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_121383094_121387155_121387228_121387391_121387499_121388104_121388202_121388312_121388415_121388933_121388974_121389649_121389727_121389807_121389930_121391891_121391971_121393106_121393209_121395751_121395844_121396145_121396205_121397481_121397679_121399830_121400011_121403933_121404045_121406535_121406697_121407747
ONT_simulated_read_13162099	chr3	-	547	1	FSM	ENSMUSG00000074506.5	ENSMUST00000098980.5	461	1	0	-86	0	86	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATTGACACGTGCCACCA	NA	NA	NA	NA	NA	NA	NA	NA	87115312	87114765	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_87114800_87115300
ONT_simulated_read_13164841	chr7	-	1343	8	ISM	ENSMUSG00000036634.16	ENST00000361922.8	2332	11	3645	459	3645	-121	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGAATCCCCAGAACTGG	NA	NA	NA	NA	NA	NA	NA	NA	30608647	30599076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_30599124_30599776_30599822_30600062_30600163_30600487_30600585_30601073_30601362_30606330_30606592_30607789_30608048_30608400
ONT_simulated_read_1316569	chr3	-	223	2	ISM	ENSMUSG00000005968.15	ENSMUST00000196655.5	2156	11	35987	9053	35987	-9050	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGCCCTTGTTCACTGTA	NA	NA	NA	NA	NA	NA	NA	NA	94530120	94529355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_94529453_94529994
ONT_simulated_read_13167464	chr4	-	218	1	NIC	ENSMUSG00000028975.17	novel	2006	9	NA	NA	138081	-1043	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAAGGGGTGCTAGATGT	NA	NA	NA	NA	NA	NA	NA	NA	149046252	149046034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_149046000_149046300
ONT_simulated_read_13169440	chr15	-	1331	11	ISM	ENSMUSG00000036606.18	ENSMUST00000060808.10	6394	36	5288	6177	5288	-6177	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCGAGAACCCCATGATAC	NA	NA	NA	NA	NA	NA	NA	NA	89049603	89045928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_89046049_89046188_89046326_89046453_89046563_89046649_89046799_89046889_89047051_89047125_89047208_89047480_89047574_89048214_89048317_89048415_89048525_89048622_89048738_89049449
ONT_simulated_read_13170625	chr1	+	463	3	ISM	ENSMUSG00000048000.16	ENSMUST00000174501.8	3876	27	52933	38287	52933	-38287	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAATCATGTTTCTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	87335100	87338580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_87335178_87335256_87335446_87338383
ONT_simulated_read_13172377	chr6	-	670	3	ISM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	33315	2016	33312	-2016	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATCACCATTAAGGCATC	NA	NA	NA	NA	NA	NA	NA	NA	39321294	39313722	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_39314219_39315682_39315749_39321186
ONT_simulated_read_13172974	chr2	-	1594	1	NIC	ENSMUSG00000032869.16	novel	3809	7	NA	NA	22624	1172	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGAAACATTCTTCCATT	NA	NA	NA	NA	NA	NA	NA	NA	151560606	151559012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_151559000_151560600
ONT_simulated_read_13173386	chr13	+	244	4	ISM	ENSMUSG00000021610.9	ENST00000507807.3	1556	12	9862	554	9862	-516	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	392	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGGAGTCTTATGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	73765703	73768185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_73765753_73765837_73765883_73766520_73766637_73768151
ONT_simulated_read_13173646	chr4	-	728	1	Antisense	novelGene_ENSMUSG00000043411.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGCACTGACAGACAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	137384744	137384016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr4_-_137384000_137384700
ONT_simulated_read_13175869	chrX	+	996	5	ISM	ENSMUSG00000000134.18	ENSMUST00000077680.10	3277	10	109	7269	72	-7264	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAACGATGAGATGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	7629005	7634172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7634131
ONT_simulated_read_13179210	chr14	-	587	6	ISM	ENSMUSG00000021972.15	ENST00000524238.3	1687	9	9483	2436	9483	-280	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGACTACTCCGAGCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	65125092	65063067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_65063142_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023
ONT_simulated_read_13179741	chr15	+	815	5	ISM	ENSMUSG00000022150.17	ENSMUST00000110664.9	4450	14	35492	10884	35461	2056	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTATCGGTACCGAATGGC	NA	NA	NA	NA	NA	NA	NA	NA	6451720	6459302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_6451848_6452566_6452648_6453406_6453434_6453677_6453732_6458776
ONT_simulated_read_1317981	chr14	-	1653	17	ISM	ENSMUSG00000063142.16	ENSMUST00000179097.8	4596	29	211623	74499	58508	-64178	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCACTGGAATGTTTCACT	NA	NA	NA	NA	NA	NA	NA	NA	23641749	23423260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_23423330_23436327_23436422_23486017_23486095_23492060_23492148_23501666_23501736_23513168_23513279_23544606_23544763_23551192_23551263_23555241_23555325_23558104_23558211_23559857_23559969_23576792_23576885_23578417_23578589_23580286_23580363_23593098_23593175_23640708_23640821_23641655
ONT_simulated_read_13181902	chr7	-	363	4	ISM	ENSMUSG00000090862.4	ENSMUST00000205490.2	1317	5	218	872	218	-872	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTAAGTATATGGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	115933150	115931616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_115931715_115932163_115932334_115932930_115933010_115933134
ONT_simulated_read_13183612	chr1	+	678	1	ISM	ENSMUSG00000026475.8	ENSMUST00000027748.8	2339	5	3476	966	3476	-966	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATGGGACCCTAAGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	153619570	153620248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_153619600_153620200
ONT_simulated_read_13190301	chr7	+	1359	13	ISM	ENSMUSG00000030505.18	ENSMUST00000032715.13	2507	16	93	29252	93	-29252	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACGGCCATGTGCACGGTA	NA	NA	NA	NA	NA	NA	NA	NA	49428186	49478761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_49428250_49428328_49428462_49430056_49430140_49430868_49430919_49431689_49431793_49435814_49435975_49436980_49437123_49441720_49441787_49448053_49448176_49456274_49456375_49467779_49467859_49476455_49476644_49478691
ONT_simulated_read_13192970	chr15	-	797	1	ISM	ENSMUSG00000037185.10	ENSMUST00000230831.2	3919	8	17675	1798	14540	-919	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCCCCTCCCTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	101247919	101247122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_101247100_101247900
ONT_simulated_read_13196642	chr19	-	1239	9	ISM	ENSMUSG00000024941.10	ENSMUST00000236978.2	2731	17	9643	141	9624	-65	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTCAGCAGGTCAGGC	NA	NA	NA	NA	NA	NA	NA	NA	5811804	5808519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809371_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680
ONT_simulated_read_1319699	chr17	-	1376	1	NIC	ENSMUSG00000024087.5	novel	3398	4	NA	NA	6539	-174	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTGTCATATATGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	80015931	80014555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_80014600_80015900
ONT_simulated_read_13197686	chr12	-	692	1	ISM	ENSMUSG00000021039.10	ENSMUST00000021428.9	2232	14	21604	69	21604	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	539	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCGCCATGGGGAACTAAGG	NA	NA	NA	NA	NA	NA	NA	NA	87497440	87496748	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_87496700_87497400
ONT_simulated_read_13199088	chr16	-	176	1	NIC	ENSMUSG00000033581.18	novel	3899	16	NA	NA	100421	81	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGCAAACCAAAGAGCATCC	NA	NA	NA	NA	NA	NA	NA	NA	21879636	21879460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_21879500_21879600
ONT_simulated_read_132005	chr7	+	738	6	FSM	ENSMUSG00000030649.19	ENST00000538393.5	865	6	72	55	-8	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCCAGGTGTGGTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	101545614	101548687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_101545658_101546939_101547025_101547153_101547279_101547760_101547821_101548106_101548245_101548400
ONT_simulated_read_13201674	chr19	+	352	1	Antisense	novelGene_ENSMUSG00002076626.1_AS_novelGene_ENSMUSG00000092341.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGTCTACAGAAAAAAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	5849027	5849379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr19_+_5849000_5849400
ONT_simulated_read_13203107	chr6	-	147	1	ISM	ENSMUSG00000054474.16	ENSMUST00000160918.8	2077	9	15637	490	12542	17	mono-exon	FALSE	NA	NA	NA	NA	NA	476	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTGTAGTGAACCCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	71105786	71105639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_71105600_71105800
ONT_simulated_read_13207016	chr8	+	189	1	ISM	ENSMUSG00000031762.8	ENSMUST00000034214.8	511	3	716	0	520	0	mono-exon	FALSE	NA	NA	NA	NA	NA	779	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTCTCTGTGCATTGGT	NA	NA	NA	NA	NA	NA	NA	NA	94900007	94900196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_94900000_94900200
ONT_simulated_read_1320762	chr8	+	272	1	ISM	ENSMUSG00000074064.7	ENSMUST00000098367.5	2128	5	20	15933	20	-15933	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCTGGCCGAGGCGTCCC	NA	NA	NA	NA	NA	NA	NA	NA	120121636	120121908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_120121600_120121900
ONT_simulated_read_13208533	chr14	-	398	1	ISM	ENSMUSG00000037722.9	ENSMUST00000046191.9	2788	6	10475	1755	6998	65	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGTATGGGTAGTAAACA	NA	NA	NA	NA	NA	NA	NA	NA	45615943	45615545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_45615500_45615900
ONT_simulated_read_13214	chr7	-	246	1	ISM	ENSMUSG00000030871.12	ENSMUST00000033159.4	2046	9	28139	58	28139	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGAACTTGTGTCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	121638347	121638101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_121638100_121638300
ONT_simulated_read_13216730	chr2	-	501	2	ISM	ENSMUSG00000078862.11	ENSMUST00000108932.8	888	5	9062	120	5458	-120	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGAAGGTTTCGGTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	177590019	177577905	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_177578350_177589962
ONT_simulated_read_13217831	chr12	-	3015	12	ISM	ENSMUSG00000021051.11	ENSMUST00000021447.9	4810	14	80411	1056	80411	562	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTACCTTTGTTCTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	75562563	75498710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_75500588_75506461_75506564_75509075_75509204_75511647_75511768_75513401_75513453_75513565_75513620_75515285_75515395_75516315_75516376_75516505_75516637_75531905_75531999_75540187_75540290_75562375
ONT_simulated_read_13217902	chr2	-	638	7	ISM	ENSMUSG00000093752.2	ENSMUST00000138667.2	5288	12	10250	8361	10250	-8361	internal_fragment	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCGGAAAACTGTGAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	168062034	168031266	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_168031315_168052350_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956
ONT_simulated_read_13222269	chr11	+	192	2	ISM	ENSMUSG00000001105.16	ENSMUST00000108275.2	582	5	30	2568	30	-2568	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTGGAGCTCAAGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	78427298	78429747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_78427403_78429659
ONT_simulated_read_13222577	chr2	+	637	5	ISM	ENSMUSG00000026904.18	ENST00000421911.1	3374	24	0	96152	0	-96152	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGCTGTTTGTTTTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	61876928	62059071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_61877037_61988549_61988632_62021083_62021231_62041698_62041838_62058910
ONT_simulated_read_13222958	chr16	-	1508	7	ISM	ENSMUSG00000022887.10	ENST00000392472.6	2133	10	28685	57	28563	-57	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	125	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTATGGAGTCTACACAAA	NA	NA	NA	NA	NA	NA	NA	NA	23310835	23288695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_23289481_23293623_23293699_23295016_23295155_23302144_23302224_23303100_23303220_23304351_23304500_23310671
ONT_simulated_read_13224222	chr7	+	1348	14	ISM	ENSMUSG00000002963.18	ENSMUST00000098478.7	1550	15	52	221	-26	-198	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGGGGGTTCTGGGGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	44506817	44511852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789
ONT_simulated_read_13225743	chr12	-	800	5	ISM	ENSMUSG00000020664.11	ENST00000440410.5	1866	13	16556	260	16556	-260	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	281	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTACCTATATTTCACGT	NA	NA	NA	NA	NA	NA	NA	NA	31384782	31382030	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611
ONT_simulated_read_13226197	chr5	+	672	3	ISM	ENSMUSG00000029186.13	ENSMUST00000031081.11	3139	10	0	18593	0	-18593	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGCTGGTGCCTACCTGG	NA	NA	NA	NA	NA	NA	NA	NA	52898915	52908089	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_52899311_52905710_52905848_52907949
ONT_simulated_read_13226816	chr9	-	2527	5	ISM	ENSMUSG00000042688.17	ENSMUST00000168937.8	4089	6	10608	1404	10608	-1402	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	522	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCCGAAATGCTAGAAACT	NA	NA	NA	NA	NA	NA	NA	NA	75306033	75295587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_75296430_75297448_75297651_75300646_75300812_75302791_75302937_75304860
ONT_simulated_read_13226967	chr11	-	997	8	ISM	ENSMUSG00000018669.15	ENSMUST00000103152.11	2250	14	4486	634	4486	-634	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACGCGCTCCCTCTGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	96802836	96798885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698
ONT_simulated_read_13229303	chr14	-	263	2	ISM	ENSMUSG00000021892.15	ENSMUST00000100730.10	2633	8	40086	2018	40086	-2018	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGTCTGTGTCCAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	31099548	31097759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_31097822_31099347
ONT_simulated_read_13234621	chr12	+	383	4	ISM	ENSMUSG00000021111.16	ENSMUST00000109901.9	4380	22	44373	2009	44195	-333	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCCCTGCAAATCCTATT	NA	NA	NA	NA	NA	NA	NA	NA	105795325	105803057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_105795537_105799358_105799422_105800968_105801044_105803023
ONT_simulated_read_13235296	chr16	-	691	7	ISM	ENSMUSG00000022749.9	ENSMUST00000226586.2	3112	19	23081	19969	10143	-18977	internal_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCAGAGAGGAAGAAGACAT	NA	NA	NA	NA	NA	NA	NA	NA	57028648	57009678	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_57009796_57011836_57011930_57012971_57013095_57018643_57018748_57019086_57019134_57019221_57019347_57028566
ONT_simulated_read_13236074	chr13	-	1992	1	NIC	ENSMUSG00000046876.17	novel	10569	8	NA	NA	407371	834	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTGGAGAAAGAGTTAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	45711062	45709070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_45709100_45711100
ONT_simulated_read_13238837	chr11	-	842	6	ISM	ENSMUSG00000020744.14	ENSMUST00000021089.11	2307	7	3776	1385	3776	-1379	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCAGCAGGTACTACAGG	NA	NA	NA	NA	NA	NA	NA	NA	115515195	115506388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024
ONT_simulated_read_13242181	chr4	-	996	9	ISM	ENSMUSG00000028960.21	ENSMUST00000239095.2	5081	30	60460	22750	60460	-22195	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGCATCCTGGACCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	149449982	149435943	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_149436043_149437384_149437485_149439874_149440014_149442081_149442281_149443653_149443768_149444734_149444834_149444916_149445034_149445740_149445798_149449910
ONT_simulated_read_1324736	chr15	+	1521	2	ISM	ENSMUSG00000047003.16	ENSMUST00000161785.8	3540	3	47	5831	42	-5831	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGGCTAGGCCTTGTAGCT	NA	NA	NA	NA	NA	NA	NA	NA	75488574	75491318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_75488670_75489892
ONT_simulated_read_13249786	chr1	-	638	1	ISM	ENSMUSG00000026577.14	ENSMUST00000027866.11	3948	9	15088	1959	15088	-370	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTAGAAGAGCTGGGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	164119965	164119327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_164119300_164120000
ONT_simulated_read_13251389	chr11	-	133	2	ISM	ENSMUSG00000042208.16	ENSMUST00000093267.11	3646	19	17190	35180	17190	-35180	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGAATTAAAATCTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	23561837	23559082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_23559125_23561746
ONT_simulated_read_13252602	chr12	+	1502	13	ISM	ENSMUSG00000020661.16	ENSMUST00000172689.8	2328	18	3865	5159	3849	-5159	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTGAGTTCTACCGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	3945592	3952683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665
ONT_simulated_read_13252884	chr5	-	268	1	ISM	ENSMUSG00000046562.6	ENSMUST00000060798.6	3659	5	9475	2683	9475	-2683	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTTTCTCTTCCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	115263559	115263291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_115263300_115263600
ONT_simulated_read_13254770	chr6	-	1431	1	ISM	ENSMUSG00000038236.9	ENSMUST00000048715.9	2009	2	1489	88	1436	-88	mono-exon	FALSE	NA	NA	NA	NA	NA	203	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCACCCCCCAGCCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	52192996	52191565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_52191600_52193000
ONT_simulated_read_13256764	chr1	-	2090	1	ISM	ENSMUSG00000037035.6	ENSMUST00000038765.6	4255	2	4157	537	4157	-537	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATATTTTTATACTTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	119345821	119343731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_119343700_119345800
ONT_simulated_read_13257517	chr19	+	636	6	ISM	ENSMUSG00000024940.12	ENST00000530785.5	1561	12	1985	1000	1985	-1000	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTCCTACCGCTGCGAGT	NA	NA	NA	NA	NA	NA	NA	NA	5805643	5807120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_5805703_5805959_5806128_5806274_5806359_5806611_5806741_5806821_5806960_5807062
ONT_simulated_read_13257804	chr2	-	845	1	ISM	ENSMUSG00000075316.12	ENSMUST00000100064.9	9840	27	150364	3664	83676	-323	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATCACAACCACACTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	66314932	66314087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_66314100_66314900
ONT_simulated_read_13258831	chr10	+	960	4	ISM	ENSMUSG00000019943.11	ENSMUST00000020107.8	7130	21	0	39142	0	-39142	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGACTGGAGCAAGGAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	98751013	98822863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_98751234_98804555_98804987_98815565_98815764_98822752
ONT_simulated_read_13261137	chr12	+	465	2	ISM	ENSMUSG00000020591.12	ENSMUST00000220892.2	846	4	258	3051	258	-3051	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCTTCTGCCCAAGTCAA	NA	NA	NA	NA	NA	NA	NA	NA	16703758	16706696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_16704125_16706597
ONT_simulated_read_13261257	chr4	-	612	1	NIC	ENSMUSG00000028955.4	novel	2120	5	NA	NA	8906	-1136	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCTTGTTGTATATCAC	NA	NA	NA	NA	NA	NA	NA	NA	151133504	151132892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_151132900_151133500
ONT_simulated_read_13261267	chr18	-	980	9	ISM	ENSMUSG00000024493.10	ENSMUST00000097590.5	3980	32	4999	39691	4999	-39494	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGAGAGCAGCCAGGAAT	NA	NA	NA	NA	NA	NA	NA	NA	42390260	42375053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134
ONT_simulated_read_13263234	chr14	+	897	7	ISM	ENSMUSG00000021737.5	ENSMUST00000022256.5	1387	8	878	158	878	-158	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	446	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAACAGGGTTCAGAAATT	NA	NA	NA	NA	NA	NA	NA	NA	8349656	8357431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
ONT_simulated_read_13265106	chr7	-	248	1	ISM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	15494	0	15494	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACGGGCTTATTTCATC	NA	NA	NA	NA	NA	NA	NA	NA	64026522	64026274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_64026300_64026500
ONT_simulated_read_1326770	chr2	-	695	4	ISM	ENSMUSG00000016257.16	ENST00000371033.9	731	5	3412	-50	-7	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	4220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTTGCTGTTGTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	174311298	174307377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_174307730_174308518_174308622_174308732_174308804_174311129
ONT_simulated_read_13270655	chr8	-	1167	12	ISM	ENSMUSG00000057672.17	ENST00000342216.8	2882	21	15103	219	15103	-219	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTGCCTACACTTTCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	84404464	84396951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_84396998_84397367_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535_84398599_84398784_84398962_84399930_84400023_84400109_84400186_84400259_84400340_84404152_84404247_84404334
ONT_simulated_read_13272427	chr7	-	660	9	ISM	ENSMUSG00000064179.14	ENSMUST00000163710.8	885	13	2123	2720	532	-2628	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGCCACTCCCAACCT	NA	NA	NA	NA	NA	NA	NA	NA	4516835	4510381	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513380_4515263_4515283_4516809
ONT_simulated_read_13275985	chrX	+	346	5	ISM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	232	10958	232	-10133	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGATCCGACGAATACTTC	NA	NA	NA	NA	NA	NA	NA	NA	74139691	74142425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368
ONT_simulated_read_13276258	chr5	+	1281	16	ISM	ENSMUSG00000039934.13	ENSMUST00000036031.13	3745	31	24	40686	24	-39594	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGACCAGTCATACTTG	NA	NA	NA	NA	NA	NA	NA	NA	21391310	21456035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_21391458_21399397_21399475_21401042_21401100_21412238_21412309_21412585_21412640_21422387_21422477_21426223_21426294_21427387_21427438_21431241_21431347_21431771_21431832_21433021_21433066_21434158_21434245_21447802_21447881_21451896_21451999_21455738_21455832_21455936
ONT_simulated_read_13278779	chrX	-	554	5	ISM	ENSMUSG00000031399.16	ENST00000322269.10	811	8	5238	-133	5238	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCAGGGCTGGCCCATTT	NA	NA	NA	NA	NA	NA	NA	NA	73431102	73428809	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_73429042_73430027_73430155_73430237_73430323_73430639_73430691_73431043
ONT_simulated_read_13279665	chr19	-	713	6	ISM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	19330	0	19330	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCAGAGTCTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	38193256	38176928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143
ONT_simulated_read_13281103	chr17	-	1655	1	ISM	ENSMUSG00000023961.17	ENSMUST00000024757.14	4560	4	6145	1702	6100	-1694	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCTGGCAGCAGCTGCGT	NA	NA	NA	NA	NA	NA	NA	NA	44410555	44408900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_44408900_44410600
ONT_simulated_read_13287577	chr2	+	1340	6	ISM	ENSMUSG00000027168.22	ENSMUST00000111082.8	3116	12	0	11442	0	-7118	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTACCAGGGCAACCCACG	NA	NA	NA	NA	NA	NA	NA	NA	105506473	105516264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_105507184_105510154_105510235_105510591_105510653_105514172_105514304_105515231_105515448_105516122
ONT_simulated_read_13288107	chr10	-	649	7	ISM	ENSMUSG00000074785.6	ENST00000545312.1	1764	12	2350	5212	2350	-5212	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCATTTGCTATAAAATACT	NA	NA	NA	NA	NA	NA	NA	NA	94663139	94633944	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_94634010_94635132_94635241_94635335_94635368_94637322_94637378_94646526_94646631_94648984_94649163_94663032
ONT_simulated_read_13288150	chr14	-	1024	14	ISM	ENSMUSG00000021820.19	ENST00000441192.2	2328	22	28005	2564	27952	-2564	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTGAGTAAAAACCCATAGC	NA	NA	NA	NA	NA	NA	NA	NA	20816082	20789395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20789471_20791445_20791560_20792772_20792822_20794671_20794717_20795859_20795929_20797886_20797920_20805726_20805771_20807733_20807797_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979
ONT_simulated_read_13289272	chr1	-	405	1	NIC	ENSMUSG00000041406.15	novel	3217	25	NA	NA	40490	-148	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAAGGAGAGGGACAGACT	NA	NA	NA	NA	NA	NA	NA	NA	163781875	163781470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_163781500_163781900
ONT_simulated_read_1328998	chr7	-	400	4	ISM	ENSMUSG00000007837.12	ENSMUST00000210690.2	1623	8	273	6646	273	-6265	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTTTGAGGACAACACAC	NA	NA	NA	NA	NA	NA	NA	NA	44711828	44709653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44709811_44710164_44710317_44711011_44711076_44711801
ONT_simulated_read_13290710	chr11	+	1859	4	ISM	ENSMUSG00000034177.16	ENSMUST00000040089.5	3670	9	29477	1175	29477	-176	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGAGGTGCTATTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	87620199	87625190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_87620388_87620957_87621061_87621852_87623212_87624981
ONT_simulated_read_13291811	chr4	+	1180	3	FSM	ENSMUSG00000086322.8	ENST00000448923.2	1174	3	-6	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1455	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCGGGGCGTGAGCGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	133971088	133973020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_133971287_133971545_133971725_133972217
ONT_simulated_read_13292477	chr7	-	2139	14	NIC	ENSMUSG00000051910.14	novel	2825	16	NA	NA	47451	-212	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTAATGGAGAGGATGAAA	NA	NA	NA	NA	NA	NA	NA	NA	115376494	115076258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_115076457_115085782_115086000_115088897_115089132_115111895_115112005_115140856_115141042_115143704_115143889_115149244_115149392_115178250_115178374_115179799_115179880_115196730_115196852_115258750_115258820_115261506_115261680_115300930_115301021_115376285
ONT_simulated_read_13293956	chr4	-	792	1	ISM	ENSMUSG00000117251.2	ENSMUST00000232991.2	1332	2	42914	369	42914	-369	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCACATATGCCCATGTTG	NA	NA	NA	NA	NA	NA	NA	NA	88914515	88913723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_88913700_88914500
ONT_simulated_read_13294082	chr7	+	390	5	ISM	ENSMUSG00000030512.14	ENSMUST00000153609.8	1248	9	265	5138	265	-5138	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCATTATCGACTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	65710350	65719197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171
ONT_simulated_read_1329414	chr2	-	721	8	ISM	ENSMUSG00000039128.14	ENSMUST00000043864.9	1827	13	23781	518	23539	-518	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCCTCGCCTAGAACACA	NA	NA	NA	NA	NA	NA	NA	NA	5826194	5799622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086
ONT_simulated_read_13296917	chr9	+	856	9	ISM	ENSMUSG00000055720.11	ENSMUST00000216841.2	1426	11	75	7466	75	-7466	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGGATACAGTGGAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	57818391	57829783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_57818455_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733
ONT_simulated_read_13297895	chr8	-	1472	9	ISM	ENSMUSG00000036180.16	ENSMUST00000065169.12	3812	13	78529	1406	56416	-1219	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCATCCCCCAATCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	70370505	70362525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369102_70369218_70369351_70370092_70370183_70370372
ONT_simulated_read_13298452	chr3	-	202	2	ISM	ENSMUSG00000027805.17	ENSMUST00000122210.2	810	3	531	179	22	-179	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCCATGGAGGCGGATTGA	NA	NA	NA	NA	NA	NA	NA	NA	57752768	57750707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_57750736_57752594
ONT_simulated_read_13300206	chr1	+	1318	9	ISM	ENSMUSG00000026504.18	ENSMUST00000027785.15	2776	18	0	166626	0	-8316	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCAGAAGCGCAGAAGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	176642225	176681377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_176642622_176652317_176652471_176653764_176653851_176656435_176656550_176658622_176658749_176667850_176667992_176672389_176672455_176672746_176672936_176681329
ONT_simulated_read_133009	chr1	+	1530	13	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	134	38018	134	-37898	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGGACACTGATAAAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	150269134	150287668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730_150285929_150287651
ONT_simulated_read_13307497	chr8	+	798	7	ISM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	101	15854	14	1551	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGTCCTGGTGCGCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	106937668	106963572	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425
ONT_simulated_read_13307606	chr13	+	493	2	ISM	ENSMUSG00000042082.8	ENSMUST00000091403.6	4038	8	66	152882	66	-152882	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTATGCTACGCACATGGT	NA	NA	NA	NA	NA	NA	NA	NA	93908203	93926642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_93908601_93926546
ONT_simulated_read_13307763	chr4	-	350	1	ISM	ENSMUSG00000040728.16	ENST00000454170.7	3372	15	53107	1162	53107	-90	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTTCTCTGTAAAATAAAG	NA	NA	NA	NA	NA	NA	NA	NA	11333444	11333094	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_11333100_11333400
ONT_simulated_read_13307804	chr1	+	789	6	ISM	ENSMUSG00000026407.18	ENST00000681874.1	5964	43	131	45869	51	-45869	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTCACTGTGTATCA	NA	NA	NA	NA	NA	NA	NA	NA	135980689	136001390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_135980791_135982316_135982423_135996658_135996799_135998371_135998515_135998647_135998801_136001244
ONT_simulated_read_133079	chr11	+	1507	8	ISM	ENSMUSG00000034773.17	ENSMUST00000100392.5	2547	10	6770	80	700	-61	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTGTCCACCAGGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	102146477	102155933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
ONT_simulated_read_13309626	chr18	-	1638	19	ISM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	84986	5245	84986	-5245	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGTACAGCTTCCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	34054986	33934624	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882
ONT_simulated_read_13313205	chr10	+	740	6	ISM	ENSMUSG00000035027.19	ENSMUST00000143517.8	2405	11	13425	770	13393	44	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGTGGAAGAAGGGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	80955173	80959761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_80955216_80955323_80955538_80956876_80956945_80957736_80957799_80958400_80958447_80959453
ONT_simulated_read_13313327	chr5	+	861	5	ISM	ENSMUSG00000041147.11	ENST00000380152.8	7969	17	13708	12078	13708	-12078	internal_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGGCTTCGTATTACAAAC	NA	NA	NA	NA	NA	NA	NA	NA	150475830	150480715	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_150475860_150476401_150476573_150477619_150477975_150480325_150480482_150480565
ONT_simulated_read_13314319	chr15	-	1186	1	ISM	ENSMUSG00000022472.17	ENSMUST00000152227.8	2934	6	21336	1119	21336	-1119	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCAGTCTTCTACTAGCT	NA	NA	NA	NA	NA	NA	NA	NA	81879028	81877842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81877800_81879000
ONT_simulated_read_13317814	chr7	-	475	4	ISM	ENSMUSG00000030470.16	ENSMUST00000167786.4	899	6	8016	230	3922	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTGCTTTCTCACAGCC	NA	NA	NA	NA	NA	NA	NA	NA	48485383	48480375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_48480455_48482309_48482404_48483486_48483620_48485214
ONT_simulated_read_1331944	chr13	-	115	1	ISM	ENSMUSG00000021676.11	ENSMUST00000068603.8	5847	36	263898	809	79947	-71	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTCTCTATTGCCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	95764605	95764490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_95764500_95764600
ONT_simulated_read_13324023	chr2	+	1170	9	ISM	ENSMUSG00000027207.16	ENSMUST00000028636.13	2605	10	14	9014	14	-8302	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAAGCACGTGTACAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	125701067	125817205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_125701298_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125817179
ONT_simulated_read_1332583	chr16	-	440	2	ISM	ENSMUSG00000003955.9	ENSMUST00000231351.2	640	5	24882	-85	24882	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATAGTATTATCTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	35866857	35864130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_35864462_35866748
ONT_simulated_read_13326083	chr7	-	762	5	ISM	ENSMUSG00000066568.13	ENST00000540746.6	2144	10	35762	596	35635	98	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCCTGTCACCAGCACTG	NA	NA	NA	NA	NA	NA	NA	NA	34053268	34045261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_34045384_34047350_34047408_34050710_34050943_34052814_34052987_34053089
ONT_simulated_read_13326108	chr17	-	441	4	ISM	ENSMUSG00000051977.17	ENSMUST00000167994.10	3438	10	4231	12146	3872	-2001	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCATCGGGCATCCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	15779332	15775486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_15775621_15775827_15775930_15777562_15777720_15779284
ONT_simulated_read_13327571	chr10	+	829	8	ISM	ENSMUSG00000020189.16	ENSMUST00000095310.3	3622	23	68827	21626	68827	-21626	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAAATCTGACAAGGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	111069489	111107989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_111069552_111091548_111091620_111099040_111099119_111101395_111101498_111103465_111103670_111105218_111105304_111106351_111106524_111107934
ONT_simulated_read_13327584	chr11	-	716	6	ISM	ENSMUSG00000020457.14	ENSMUST00000020741.12	1546	9	7017	406	7017	-406	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCACACATTGGAAGATGAA	NA	NA	NA	NA	NA	NA	NA	NA	3209376	3200312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_3200366_3202159_3202283_3202643_3202812_3204511_3204643_3206542_3206713_3209305
ONT_simulated_read_13328884	chr13	-	846	1	ISM	ENSMUSG00000069089.9	ENSMUST00000091299.8	1988	12	27463	0	27424	0	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTGTTTATGGACTATT	NA	NA	NA	NA	NA	NA	NA	NA	100839984	100839138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_100839100_100840000
ONT_simulated_read_13329336	chr7	+	282	1	FSM	ENSMUSG00000091083.5	ENSMUST00000182274.2	558	1	0	276	0	-276	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGAGGCTGCTGTCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	140986549	140986831	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_140986500_140986800
ONT_simulated_read_13332558	chr7	-	637	1	ISM	ENSMUSG00000058239.14	ENSMUST00000058860.14	2419	10	10156	763	10110	569	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTGGCCCCGCCTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	30646072	30645435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_30645400_30646100
ONT_simulated_read_13332657	chr6	-	229	3	ISM	ENSMUSG00000012483.5	ENSMUST00000012627.5	670	4	1428	251	1428	-26	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGCTTCCACAACATGAAT	NA	NA	NA	NA	NA	NA	NA	NA	8257745	8256186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_8256248_8256694_8256804_8257686
ONT_simulated_read_13332995	chr10	+	820	6	ISM	ENSMUSG00000019977.17	ENSMUST00000219915.2	2733	18	25	26953	20	4846	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAAAAGCGGCAGGGCGG	NA	NA	NA	NA	NA	NA	NA	NA	21171956	21217829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612
ONT_simulated_read_1333321	chr2	+	1628	7	ISM	ENSMUSG00000059005.14	ENST00000679328.1	1920	11	2712	-348	2712	304	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGTCATTTTCCTTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	75492832	75496769	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
ONT_simulated_read_13336115	chr6	-	196	1	ISM	ENSMUSG00000029776.12	ENSMUST00000031788.9	1825	8	93355	611	93355	-611	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGTAATGGTCTAATC	NA	NA	NA	NA	NA	NA	NA	NA	52524019	52523823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_52523800_52524000
ONT_simulated_read_13337544	chr4	+	688	4	ISM	ENSMUSG00000028911.17	ENSMUST00000053819.6	2257	6	0	3872	0	-3872	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGCCGGTCTTACTCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	131600927	131625145	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_131601182_131618517_131618661_131619391_131619505_131624967
ONT_simulated_read_13338027	chr8	-	1269	7	ISM	ENSMUSG00000037852.9	ENSMUST00000048967.9	2117	9	75377	211	75377	-211	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	437	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTGGTAATGCACTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	65070711	65045786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_65046256_65047930_65048050_65050493_65050594_65059636_65059777_65062081_65062265_65064407_65064526_65070571
ONT_simulated_read_13340327	chr11	-	1539	10	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	11682	4621	11626	-3239	internal_fragment	TRUE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAACTCAGGAGCAGCTAA	NA	NA	NA	NA	NA	NA	NA	NA	40612567	40596842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465
ONT_simulated_read_1334131	chr2	+	1441	10	ISM	ENSMUSG00000027115.15	ENSMUST00000028527.8	3369	17	11285	23703	11285	-23703	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTCCAGGGATTTCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	109122367	109148389	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891_109141014_109148219
ONT_simulated_read_1334172	chr15	+	257	3	ISM	ENSMUSG00000068114.8	ENSMUST00000089174.6	2046	7	56	10714	56	-10714	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACATCCACCAGCAGTAC	NA	NA	NA	NA	NA	NA	NA	NA	82012178	82015690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_82012251_82014252_82014372_82015624
ONT_simulated_read_13342431	chr14	+	442	4	ISM	ENSMUSG00000022110.14	ENSMUST00000022706.7	1545	12	0	26893	0	-26893	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGATTGGGCAAAAATTG	NA	NA	NA	NA	NA	NA	NA	NA	73790205	73806330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301
ONT_simulated_read_13344875	chr4	-	2044	10	ISM	ENSMUSG00000028803.19	ENSMUST00000105856.9	2624	12	11971	148	11971	-148	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTCAGTATTTTGCTAGC	NA	NA	NA	NA	NA	NA	NA	NA	135209846	135173595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_135174717_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135206846_135207019_135209782
ONT_simulated_read_13346335	chr16	-	1560	4	NNC	ENSMUSG00000022661.15	novel	2085	6	NA	NA	11609	-389	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATGAAAACAGATACTTT	NA	NA	NA	NA	NA	NA	NA	NA	45217629	45202934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr16_-_45203821_45212643_45212752_45214955_45215224_45217331
ONT_simulated_read_13353308	chr5	-	501	1	NIC	ENSMUSG00000055302.6	novel	1648	2	NA	NA	827	-578	mono-exon	FALSE	NA	NA	NA	NA	NA	785	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATGGCAGAAGAGACCAG	NA	NA	NA	NA	NA	NA	NA	NA	36953289	36952788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_36952800_36953300
ONT_simulated_read_13354386	chr6	-	1905	1	ISM	ENSMUSG00000030002.16	ENSMUST00000032071.13	6435	9	13906	3589	13906	-3589	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTTGCAGCCTTTGATG	NA	NA	NA	NA	NA	NA	NA	NA	85924743	85922838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_85922800_85924700
ONT_simulated_read_13356843	chr5	+	1360	4	ISM	ENSMUSG00000040557.15	ENSMUST00000068617.12	1685	5	399	236	392	-236	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGGGTGTCAAACACAC	NA	NA	NA	NA	NA	NA	NA	NA	134961637	134970341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_134961702_134962326_134962456_134963142_134963279_134969310
ONT_simulated_read_13359879	chr10	-	646	1	Genic_Genomic	ENSMUSG00000019773.8	novel	NA	NA	NA	NA	5797	2	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTGTGCAGGTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	5749803	5749157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr10_-_5749200_5749800
ONT_simulated_read_13362152	chr17	-	983	1	ISM	ENSMUSG00000077450.14	ENSMUST00000057373.14	6109	5	12745	4319	12505	-53	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTCTGCAAGTGAAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	33966759	33965776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_33965800_33966800
ONT_simulated_read_1336328	chr2	-	1301	9	ISM	ENSMUSG00000036352.17	ENSMUST00000036509.14	1852	10	5331	200	5331	-200	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGATTGCTGCCCGTCCC	NA	NA	NA	NA	NA	NA	NA	NA	25906428	25888754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25889080_25895337_25895477_25896538_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533_25900642_25904903_25904978_25906307
ONT_simulated_read_13363643	chr12	-	1191	4	ISM	ENSMUSG00000042628.9	ENSMUST00000048319.6	4036	12	44685	533	44577	-533	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCTTGAAGCAGTCATGG	NA	NA	NA	NA	NA	NA	NA	NA	83599311	83594155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149
ONT_simulated_read_13367959	chr17	-	1564	5	ISM	ENSMUSG00000060475.14	ENSMUST00000007007.14	2051	8	10461	200	10394	-200	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAGTTTCAGCGTTAGAT	NA	NA	NA	NA	NA	NA	NA	NA	13200685	13185885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_13186939_13188291_13188447_13194182_13194362_13199708_13199837_13200636
ONT_simulated_read_13371436	chr1	-	1358	1	ISM	ENSMUSG00000060519.12	ENSMUST00000079625.11	3285	6	18432	950	18390	456	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAGCAAAGGCAGTCACA	NA	NA	NA	NA	NA	NA	NA	NA	156483494	156482136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_156482100_156483500
ONT_simulated_read_13372843	chr5	-	151	1	ISM	ENSMUSG00000011884.14	ENSMUST00000012028.14	1762	5	20421	1015	20345	-185	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAGGCGCCCGGACACAC	NA	NA	NA	NA	NA	NA	NA	NA	114808624	114808473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_114808500_114808600
ONT_simulated_read_13378676	chr4	-	577	5	ISM	ENSMUSG00000050323.15	ENSMUST00000058183.9	1082	9	14052	0	11093	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTGGTCTGAGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	11062152	11051044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049
ONT_simulated_read_13379001	chr11	-	462	1	ISM	ENSMUSG00000040712.17	ENSMUST00000108545.9	4377	21	17697	322	17685	-319	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTGACTCCGCATGTTT	NA	NA	NA	NA	NA	NA	NA	NA	70561072	70560610	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_70560600_70561100
ONT_simulated_read_13379440	chr19	-	1031	1	FSM	ENSMUSG00000095690.3	ENSMUST00000178377.3	654	1	0	-377	0	377	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTCTCCTGTCCTGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	7376442	7375411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_7375400_7376400
ONT_simulated_read_13380135	chr11	+	4035	1	ISM	ENSMUSG00000005417.18	ENSMUST00000072031.13	8718	23	113173	1158	113094	-1152	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGCTGGAGCATACGCTG	NA	NA	NA	NA	NA	NA	NA	NA	59666493	59670528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_59666500_59670500
ONT_simulated_read_1338190	chr6	-	526	2	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	11173	1986	11173	11	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCAATGCTGGGGTTGAC	NA	NA	NA	NA	NA	NA	NA	NA	122708531	122706753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_122707100_122708351
ONT_simulated_read_13385484	chr8	-	512	1	ISM	ENSMUSG00000056204.9	ENSMUST00000070173.9	4883	5	9094	3698	9007	45	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTCAGGCCTAACCAACAA	NA	NA	NA	NA	NA	NA	NA	NA	71103294	71102782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71102800_71103300
ONT_simulated_read_1338895	chr11	+	856	2	ISM	ENSMUSG00000042331.14	ENSMUST00000201723.4	2690	6	6	20107	0	-19656	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACTGCAGACACCCCGTC	NA	NA	NA	NA	NA	NA	NA	NA	61967922	62009241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_61968063_62008525
ONT_simulated_read_13389873	chr9	-	324	3	ISM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	25733	851	7185	-446	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTCATGTTGTGTTGTCG	NA	NA	NA	NA	NA	NA	NA	NA	96220762	96215558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_96215748_96217431_96217516_96220711
ONT_simulated_read_1339023	chr9	-	1574	1	ISM	ENSMUSG00000066235.8	ENSMUST00000217610.2	2413	3	12209	625	12205	-620	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTGCCACCGAGGCCCGC	NA	NA	NA	NA	NA	NA	NA	NA	121812870	121811296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_121811300_121812900
ONT_simulated_read_13391003	chr11	+	197	1	ISM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	0	2015	0	-2015	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGCCTTCCGCAGGCCGT	NA	NA	NA	NA	NA	NA	NA	NA	100210710	100210907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_100210700_100210900
ONT_simulated_read_13392116	chr10	-	563	1	ISM	ENSMUSG00000112907.2	ENSMUST00000217947.2	2709	2	2566	1815	2566	-1815	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGTAGAGAAATATTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	79251173	79250610	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_79250600_79251200
ONT_simulated_read_13392949	chr15	+	274	1	FSM	ENSMUSG00000036305.8	ENSMUST00000146505.2	151	1	0	-123	0	123	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAGTAATAAAATATAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	102543472	102543746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102543500_102543700
ONT_simulated_read_13393208	chr16	-	797	6	ISM	ENSMUSG00000022892.12	ENST00000358918.7	2367	17	158268	44	158268	-44	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGAACTTGGACAGCGA	NA	NA	NA	NA	NA	NA	NA	NA	84812220	84752194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_84752321_84759609_84759757_84762557_84762659_84774951_84775174_84810514_84810615_84812119
ONT_simulated_read_13399713	chr7	+	344	2	FSM	ENSMUSG00000070509.16	ENST00000557420.1	852	2	17	491	17	-491	multi-exon	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGCCTGAAGATCACAGA	NA	NA	NA	NA	NA	NA	NA	NA	73041023	73067187	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_73041245_73067064
ONT_simulated_read_1340432	chr9	+	2692	16	FSM	ENSMUSG00000038535.18	ENST00000559000.6	2716	16	24	0	24	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTTCTCTTCTAAAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	72206008	72247466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246897
ONT_simulated_read_13405487	chr8	-	947	10	ISM	ENSMUSG00000058355.9	ENSMUST00000080536.8	3793	18	3233	6954	3233	-6954	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTCAGGGATGCGTCGC	NA	NA	NA	NA	NA	NA	NA	NA	80435136	80417044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051
ONT_simulated_read_13408794	chr5	+	1397	1	FSM	ENSMUSG00000105263.2	ENSMUST00000200473.2	5292	1	0	3895	0	-3895	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGCCCAAAAGACTCAGTA	NA	NA	NA	NA	NA	NA	NA	NA	44295321	44296718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_44295300_44296700
ONT_simulated_read_13409052	chr7	-	855	1	ISM	ENSMUSG00000030421.10	ENSMUST00000085513.6	3441	11	57954	742	35134	210	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGTTTGTTTGTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	37661013	37660158	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_37660200_37661000
ONT_simulated_read_13409114	chr11	-	773	1	ISM	ENSMUSG00000047126.18	ENSMUST00000103186.11	6519	32	61892	550	61820	-246	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTGCTGTATCCTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	86586499	86585726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_86585700_86586500
ONT_simulated_read_13410982	chr13	-	2036	9	ISM	ENSMUSG00000057554.14	ENSMUST00000099820.10	2736	10	2220	404	-27	-404	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTTCATTTTCATGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	12474164	12454708	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054
ONT_simulated_read_13413781	chr15	-	1826	8	ISM	ENSMUSG00000022387.18	ENSMUST00000109381.9	5152	13	21331	1196	17869	66	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTACATGTTTGTATAT	NA	NA	NA	NA	NA	NA	NA	NA	88597105	88572432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585474_88591236_88591498_88596818
ONT_simulated_read_13417373	chr2	-	1057	1	ISM	ENSMUSG00000009614.17	ENSMUST00000102886.10	4521	21	57634	183	50082	-183	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGGAGGGCAGGAGGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	27079644	27078587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_27078600_27079600
ONT_simulated_read_13418837	chr5	+	1010	5	FSM	ENSMUSG00000041827.16	ENST00000339275.10	1377	5	141	226	-10	-226	multi-exon	FALSE	canonical	NA	NA	NA	NA	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCCCTGAGATCCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	115061493	115075216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_115061669_115066081_115066365_115067898_115068063_115073979_115074128_115074976
ONT_simulated_read_13418841	chrX	-	999	1	ISM	ENSMUSG00000035062.14	ENSMUST00000120620.8	2156	5	17760	457	17735	-451	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTATATGAATGCCAATCA	NA	NA	NA	NA	NA	NA	NA	NA	94684254	94683255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_94683300_94684300
ONT_simulated_read_13421230	chr8	+	1439	9	ISM	ENSMUSG00000031565.19	ENST00000341462.9	2966	17	13447	5356	0	-5356	internal_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGAGGATCCCCGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	26022296	26058313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_26022445_26045523_26045791_26047746_26047831_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056924_26058203
ONT_simulated_read_13421707	chr13	+	2317	1	ISM	ENSMUSG00000021413.10	ENSMUST00000077853.5	7844	15	26629	1817	26629	-1817	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTTCCTCGAAAGTAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	35085913	35088230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_35085900_35088200
ONT_simulated_read_13425972	chr12	+	508	1	ISM	ENSMUSG00000037594.12	ENSMUST00000037014.11	1960	5	0	6808	0	-6274	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGAGGGGTCCCCCCACC	NA	NA	NA	NA	NA	NA	NA	NA	112772556	112773064	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_112772600_112773100
ONT_simulated_read_13426348	chr5	-	582	1	NIC	ENSMUSG00000029575.18	novel	3020	9	NA	NA	8652	-113	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCACCCAGGTCAAGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	114573383	114572801	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_114572800_114573400
ONT_simulated_read_13431863	chr1	+	852	9	ISM	ENSMUSG00000026553.18	ENST00000647683.1	3656	33	16845	11209	16845	-11209	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAAGGCTTCATCATATC	NA	NA	NA	NA	NA	NA	NA	NA	171927302	171938139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055
ONT_simulated_read_13433052	chr7	-	735	5	ISM	ENSMUSG00000030652.12	ENSMUST00000032887.4	914	6	3620	0	3561	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTGGTTTTCTTGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	118128959	118124284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_118124518_118125046_118125116_118126559_118126700_118127526_118127642_118128781
ONT_simulated_read_13433852	chr17	-	908	6	ISM	ENSMUSG00000023923.11	ENSMUST00000024717.10	5435	22	261471	49229	261471	-48349	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCACCTCCATCCGCTACT	NA	NA	NA	NA	NA	NA	NA	NA	51224725	51089380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_51089453_51106894_51107224_51120783_51120870_51159560_51159668_51181593_51181737_51224554
ONT_simulated_read_13435082	chrX	-	2399	7	ISM	ENSMUSG00000031373.5	ENSMUST00000033739.5	3436	8	13015	962	13015	-962	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGTGTGTTTTGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	162797978	162760779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_162762367_162770093_162770250_162771345_162771409_162773420_162773517_162774346_162774466_162783234_162783433_162797798
ONT_simulated_read_13437873	chr3	-	647	5	ISM	ENSMUSG00000028184.13	ENSMUST00000195988.5	4541	22	127202	629	-4606	-629	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACAACTTGGAGCTCAAG	NA	NA	NA	NA	NA	NA	NA	NA	148533221	148523357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_148523565_148528590_148528688_148529331_148529461_148532000_148532170_148533176
ONT_simulated_read_13437962	chr10	-	708	5	ISM	ENSMUSG00000064181.7	ENSMUST00000020375.7	2690	10	12756	8357	12756	-7364	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCGCTTCGTGAAGGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	116773529	116750045	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_116750115_116751748_116751878_116754666_116754871_116755478_116755557_116773301
ONT_simulated_read_13441739	chr17	-	387	1	NIC	ENSMUSG00000024098.7	novel	1850	6	NA	NA	24658	-3006	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAAGGTGCCGTCTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	66233452	66233065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_66233100_66233500
ONT_simulated_read_13442487	chr2	-	1596	1	ISM	ENSMUSG00000027109.17	ENSMUST00000102689.10	4181	7	42105	319	42085	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTAAGACCACCTCAGAT	NA	NA	NA	NA	NA	NA	NA	NA	72768685	72767089	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_72767100_72768700
ONT_simulated_read_13442631	chr16	-	568	6	ISM	ENSMUSG00000022538.21	ENSMUST00000117363.9	3180	14	4940	11009	4940	-11009	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGAGTCTGAAAGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	30401470	30390320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348
ONT_simulated_read_13448191	chr12	+	1680	1	ISM	ENSMUSG00000021066.10	ENSMUST00000021466.10	5150	15	70304	1329	55573	1059	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGGAGTGCTTATACTT	NA	NA	NA	NA	NA	NA	NA	NA	70010182	70011862	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_70010200_70011900
ONT_simulated_read_13448944	chr2	-	423	2	ISM	ENSMUSG00000035778.18	ENSMUST00000044255.13	1221	7	15245	409	15245	-409	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGGGTGGAAACTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	35298094	35292529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_35292815_35297956
ONT_simulated_read_13449352	chr5	-	2485	7	ISM	ENSMUSG00000029127.16	ENSMUST00000094833.10	2978	8	3859	343	3856	-343	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGCTACTGTACATTTGT	NA	NA	NA	NA	NA	NA	NA	NA	38373942	38357766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38367961_38368009_38370651_38371728_38373790
ONT_simulated_read_1345036	chr11	-	1877	13	ISM	ENSMUSG00000020282.19	ENSMUST00000020524.15	2946	18	8018	219	153	3	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCGTGGACTCCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	32164282	32159803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_32160224_32160397_32160552_32160657_32160759_32160826_32160903_32161110_32161206_32161581_32161646_32161919_32162021_32162622_32162785_32162867_32162943_32163051_32163164_32163259_32163518_32163951_32164110_32164181
ONT_simulated_read_13451710	chr8	-	570	1	FSM	ENSMUSG00000052825.7	ENSMUST00000182415.2	992	1	0	422	0	-422	mono-exon	FALSE	NA	NA	NA	NA	NA	2450	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATGGTTGCTGGAGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	52650091	52649521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_52649500_52650100
ONT_simulated_read_13454525	chr6	-	574	1	ISM	ENSMUSG00000044471.13	ENST00000643452.1	1545	3	1370	37450	-629	-456	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTCACGTGGGAGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	31196038	31195464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_31195500_31196000
ONT_simulated_read_1345922	chr9	-	1137	8	ISM	ENSMUSG00000032504.16	ENSMUST00000035086.13	5951	18	20556	10640	20541	-7912	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTGATAAATGAGGAGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	113516771	113491451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_113491586_113500824_113500995_113501770_113501883_113503392_113503571_113507373_113507498_113509020_113509244_113514374_113514492_113516692
ONT_simulated_read_13460584	chr4	-	628	1	NIC	ENSMUSG00000028409.12	novel	2418	12	NA	NA	20527	-227	mono-exon	FALSE	NA	NA	NA	NA	NA	366	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCATTCTGCTCTTTATG	NA	NA	NA	NA	NA	NA	NA	NA	40737396	40736768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_40736800_40737400
ONT_simulated_read_13462027	chr17	-	661	4	ISM	ENSMUSG00000073437.11	ENSMUST00000181014.8	1903	7	2346	592	1541	-592	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCCGGCCAGAAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	24631057	24624214	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24624313_24628837_24629146_24629231_24629328_24630898
ONT_simulated_read_13462408	chr8	-	577	1	ISM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	4097	643	4097	-643	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTTCAGATAGTGAAATA	NA	NA	NA	NA	NA	NA	NA	NA	27614611	27614034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_27614000_27614600
ONT_simulated_read_13464851	chr13	-	1010	1	ISM	ENSMUSG00000022228.15	ENSMUST00000032820.15	3918	4	7863	2608	7863	-2608	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTATAATAATTTACCAGA	NA	NA	NA	NA	NA	NA	NA	NA	21629967	21628957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_21629000_21630000
ONT_simulated_read_13467467	chr19	-	1988	1	ISM	ENSMUSG00000045664.6	ENSMUST00000055458.6	3411	2	5853	1340	5853	-1340	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGCCCACTGGATACGAA	NA	NA	NA	NA	NA	NA	NA	NA	5968991	5967003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5967000_5969000
ONT_simulated_read_13471182	chr2	-	1014	9	ISM	ENSMUSG00000027610.18	ENSMUST00000130881.8	1724	12	14314	439	14314	-439	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAGTCCTGGACAACCCC	NA	NA	NA	NA	NA	NA	NA	NA	155420320	155405547	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208
ONT_simulated_read_13471823	chr12	-	346	1	ISM	ENSMUSG00000021252.12	ENSMUST00000021676.12	1169	5	8329	400	8329	-400	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTAGTCCTTCAAAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	85862967	85862621	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_85862600_85863000
ONT_simulated_read_13475010	chr9	-	1217	1	NIC	ENSMUSG00000032575.17	novel	2247	4	NA	NA	2189	-595	mono-exon	FALSE	NA	NA	NA	NA	NA	521	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTATGGGAGGAGGGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	106766425	106765208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_106765200_106766400
ONT_simulated_read_13475138	chr5	+	1240	13	ISM	ENSMUSG00000029146.15	ENSMUST00000031029.15	2018	15	1616	417	1616	-417	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGTCTGCCCTCTACCTG	NA	NA	NA	NA	NA	NA	NA	NA	31352186	31355827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31352258_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
ONT_simulated_read_13477507	chr13	-	952	7	ISM	ENSMUSG00000003062.14	ENST00000396013.5	1251	9	21957	-29	3444	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTGTCTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	19557383	19541845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305
ONT_simulated_read_13479192	chr9	-	1007	1	ISM	ENSMUSG00000050721.10	ENSMUST00000068944.9	3273	6	23004	1646	23004	-1646	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCCAACCTTGCTAAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	65464318	65463311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_65463300_65464300
ONT_simulated_read_13485759	chr18	+	610	3	ISM	ENSMUSG00000041915.10	ENSMUST00000115808.4	3385	8	0	10890	0	-10889	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAACCACCAGCATGTGG	NA	NA	NA	NA	NA	NA	NA	NA	31892932	31904906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_31893248_31894832_31894944_31904722
ONT_simulated_read_13489910	chr5	+	733	5	ISM	ENSMUSG00000042605.17	ENST00000673283.1	3462	23	90070	1187	90070	-969	internal_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACCCGGCGGTCCCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	121940173	121951518	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121951447
ONT_simulated_read_13491565	chr10	-	319	2	ISM	ENSMUSG00000025358.17	ENST00000440311.6	901	5	24	4679	24	-4679	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGCACCAGGACCTCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	128540848	128539645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128539697_128540580
ONT_simulated_read_13491700	chr14	-	614	3	ISM	ENSMUSG00000021835.16	ENSMUST00000074077.12	2064	4	3365	1108	3246	-921	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTCCTCGGCAGAGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	46624761	46622084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_46622170_46623171_46623552_46624612
ONT_simulated_read_13497978	chr2	-	1449	6	ISM	ENSMUSG00000044033.17	ENSMUST00000164114.9	6222	24	139967	4497	139926	-4497	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTCCAGGCTGCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	76860994	76844835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_76845592_76850256_76850374_76853789_76853903_76857935_76858120_76859579_76859775_76860910
ONT_simulated_read_13503777	chr12	-	296	2	ISM	ENSMUSG00000076614.8	ENST00000390555.3	1100	5	1199	998	1199	-998	internal_fragment	FALSE	canonical	NA	NA	NA	NA	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGCCCAGGACGGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	113292875	113291168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_113291193_113292603
ONT_simulated_read_13503915	chr15	+	1368	4	ISM	ENSMUSG00000037386.17	ENSMUST00000042917.10	4719	27	0	244098	0	-244098	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCACCACTTAGATCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	39061757	39301062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_39061934_39155496_39155708_39208705_39209017_39300392
ONT_simulated_read_1350399	chr19	+	416	1	ISM	ENSMUSG00000034445.9	ENSMUST00000237814.2	3130	8	0	12242	0	-10961	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATAGAACCCGGGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	10554535	10554951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_10554500_10555000
ONT_simulated_read_13504679	chr17	+	298	1	ISM	ENSMUSG00000024429.10	ENSMUST00000087200.4	2848	12	0	9314	0	-9314	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGGCGGGCCGGGGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	36290742	36291040	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_36290700_36291000
ONT_simulated_read_135094	chr2	-	1098	5	ISM	ENSMUSG00000026972.16	ENSMUST00000102935.10	1574	8	8142	167	8142	-167	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCTGGCTCAGCTACTCA	NA	NA	NA	NA	NA	NA	NA	NA	24817033	24815530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_24815689_24815767_24816207_24816283_24816458_24816556_24816740_24816889
ONT_simulated_read_13509874	chr2	+	1302	10	ISM	ENSMUSG00000049044.17	ENST00000538974.5	3881	26	134198	707	134198	381	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATATAATTGAATGAATTGT	NA	NA	NA	NA	NA	NA	NA	NA	72056925	72087101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_72056966_72059349_72059448_72064420_72064547_72064951_72065131_72069407_72069499_72071770_72071822_72072577_72072666_72073071_72073137_72083283_72083339_72086592
ONT_simulated_read_13509908	chr15	+	643	8	ISM	ENSMUSG00000015002.19	ENSMUST00000211878.2	2541	23	45268	0	45268	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGCTCATGAAGACTACAG	NA	NA	NA	NA	NA	NA	NA	NA	65727350	65743107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_65727397_65728370_65728439_65729312_65729441_65733500_65733593_65737726_65737776_65738572_65738677_65739118_65739169_65743001
ONT_simulated_read_13510710	chr16	-	995	6	ISM	ENSMUSG00000022664.12	ENSMUST00000023344.10	4233	7	106	4540	-34	77	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTATTTCTTCAATGGC	NA	NA	NA	NA	NA	NA	NA	NA	44978963	44964475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_44964765_44967630_44967699_44971815_44971950_44972939_44973039_44977823_44978010_44978744
ONT_simulated_read_13511342	chr2	-	359	1	ISM	ENSMUSG00000034226.8	ENSMUST00000037360.8	1703	3	786	927	786	-927	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCGTCTGGAGAAGAAACT	NA	NA	NA	NA	NA	NA	NA	NA	119100967	119100608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_119100600_119101000
ONT_simulated_read_13513713	chr10	-	240	2	ISM	ENSMUSG00000003923.15	ENSMUST00000121685.8	899	7	8540	0	8540	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCTCAAAGCCTTAAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	71064968	71064341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_71064530_71064916
ONT_simulated_read_13514288	chr10	+	1069	10	ISM	ENSMUSG00000034560.7	ENST00000620430.5	3555	33	35455	2516	35455	-2516	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATATTCTTCAGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	83415331	83427587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_83415421_83416120_83416226_83417120_83417256_83419118_83419228_83421681_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552
ONT_simulated_read_13514542	chr4	+	292	3	ISM	ENSMUSG00000028671.17	ENSMUST00000102540.2	1537	10	454	1694	454	-1694	internal_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTACGGCAAGTCCAAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	135692929	135693795	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_135692993_135693313_135693428_135693680
ONT_simulated_read_13515793	chr15	-	1103	1	FSM	ENSMUSG00000099110.3	ENSMUST00000183910.3	75	1	74	-1102	74	1102	mono-exon	FALSE	NA	NA	NA	NA	NA	656	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCTAACCTTAAAGAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	38490717	38489614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_38489600_38490700
ONT_simulated_read_13516036	chr17	+	919	10	ISM	ENSMUSG00000041119.13	ENSMUST00000136384.9	1887	16	15296	5601	15232	-5447	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCCCCATTCATGGACC	NA	NA	NA	NA	NA	NA	NA	NA	31667340	31689683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_31667426_31672375_31672455_31674027_31674103_31678048_31678136_31678874_31678980_31679152_31679236_31680544_31680702_31685328_31685443_31688767_31688873_31689654
ONT_simulated_read_13518304	chr10	+	525	1	FSM	ENSMUSG00000040540.7	ENSMUST00000075147.6	811	1	0	286	0	-286	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGACCGGTGCGGGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	130248367	130248892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_130248400_130248900
ONT_simulated_read_13518509	chr15	+	538	6	ISM	ENSMUSG00000037003.17	ENSMUST00000230474.2	4637	28	8706	1881	8706	-1872	internal_fragment	FALSE	canonical	NA	NA	NA	NA	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCAGACCTCCTGCGTC	NA	NA	NA	NA	NA	NA	NA	NA	102021565	102022954	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_102021668_102021770_102021861_102022144_102022271_102022475_102022569_102022695_102022774_102022905
ONT_simulated_read_13518529	chr15	+	1629	7	ISM	ENSMUSG00000035757.18	ENSMUST00000082439.6	2383	9	0	979	0	-979	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCAGTCTCGGCTAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	88973286	88983564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_88973869_88976906_88977111_88978339_88978527_88979801_88979933_88980741_88981023_88982834_88982980_88983465
ONT_simulated_read_13518943	chr2	-	629	4	ISM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	2314	1600	2314	-1600	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	159	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATTGTCTGTCTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	25253380	25251500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25251752_25252082_25252150_25252674_25252861_25253255
ONT_simulated_read_13519601	chr3	+	272	2	ISM	ENSMUSG00000028128.14	ENSMUST00000029771.13	1872	6	33	10033	33	-10033	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGATTTCAAGACAATTTTG	NA	NA	NA	NA	NA	NA	NA	NA	121517218	121518664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_121517452_121518625
ONT_simulated_read_13519684	chr14	-	154	2	ISM	ENSMUSG00000002319.17	ENSMUST00000047131.16	3846	30	6532	3520	6532	-3520	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGGTGATGGCCGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	55866609	55866376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55866445_55866523
ONT_simulated_read_13520480	chr8	-	850	6	ISM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	65998	1960	65998	1628	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTCTGAACAGCGGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	61978178	61966426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_61966559_61968236_61968371_61968902_61969069_61969568_61969777_61975917_61976051_61978101
ONT_simulated_read_13520487	chr15	-	965	1	ISM	ENSMUSG00000022378.15	ENSMUST00000063838.11	3797	12	128809	1578	66330	267	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTCTCGGTTTCAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	63803488	63802523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_63802500_63803500
ONT_simulated_read_13520767	chr14	-	972	4	ISM	ENSMUSG00000068697.8	ENSMUST00000090469.8	1289	6	2744	111	1565	-111	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1450	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCCCTCCTCACCAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	20703864	20699285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20699678_20700556_20700723_20701094_20701336_20703691
ONT_simulated_read_13522123	chrX	-	603	2	ISM	ENSMUSG00000031176.9	ENSMUST00000033519.3	2176	5	6545	1273	4565	839	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTCCTTTGTTGAATT	NA	NA	NA	NA	NA	NA	NA	NA	9522697	9521778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_9522303_9522618
ONT_simulated_read_13522274	chr18	-	722	6	ISM	ENSMUSG00000025420.14	ENST00000356157.12	1557	15	16711	-5	16711	5	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCCCAGCCTGACCTG	NA	NA	NA	NA	NA	NA	NA	NA	77090238	77065080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_77065222_77066125_77066229_77067694_77067858_77082089_77082201_77085294_77085387_77090126
ONT_simulated_read_13525844	chr8	-	2007	1	ISM	ENSMUSG00000037022.4	ENSMUST00000048718.4	5650	7	26738	2595	26738	-2595	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCAGCATTACTCTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	79994828	79992821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_79992800_79994800
ONT_simulated_read_13527443	chr10	+	731	6	ISM	ENSMUSG00000020260.10	ENSMUST00000020493.9	2290	9	100	3719	100	-3719	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAGCACTTGCGGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	77095151	77101690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_77095288_77096407_77096659_77098270_77098416_77099098_77099210_77100789_77100857_77101669
ONT_simulated_read_13529843	chr14	+	200	4	ISM	ENSMUSG00000022216.18	ENSMUST00000089619.13	711	11	1459	739	1459	-739	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTGGCGTGGCTGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	55817490	55818099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_55817499_55817570_55817617_55817786_55817885_55818051
ONT_simulated_read_13533043	chrX	-	626	1	ISM	ENSMUSG00000050332.8	ENSMUST00000084535.6	8496	2	16299	7630	16299	-7630	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAGTGTGCCAGGGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	94472179	94471553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_94471600_94472200
ONT_simulated_read_13534057	chr11	+	2050	12	ISM	ENSMUSG00000020319.10	ENSMUST00000020568.10	2792	18	117348	276	37361	-276	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTATACATTTGAATCATC	NA	NA	NA	NA	NA	NA	NA	NA	21639582	21848713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_21639683_21641769_21641904_21645113_21645306_21661461_21662072_21671102_21671292_21674512_21674637_21698877_21698942_21763359_21763463_21807446_21807610_21834983_21835088_21836259_21836289_21848475
ONT_simulated_read_13534606	chr19	-	333	1	NIC	ENSMUSG00000035885.6	novel	550	2	NA	NA	2131	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2210	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCATGTCCTTCTGCAC	NA	NA	NA	NA	NA	NA	NA	NA	7192850	7192517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_7192500_7192800
ONT_simulated_read_1353626	chr19	+	914	1	FSM	ENSMUSG00000117822.2	ENSMUST00000236146.2	1387	1	0	473	0	-473	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACAATGTGGGCTTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	17903986	17904900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_17904000_17904900
ONT_simulated_read_1353696	chr11	+	601	5	ISM	ENSMUSG00000020897.13	ENSMUST00000021277.6	1950	8	2325	1307	2325	-1307	internal_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATGCATAATGAAATGGTA	NA	NA	NA	NA	NA	NA	NA	NA	68938802	68941183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127
ONT_simulated_read_1353750	chr2	-	684	7	ISM	ENSMUSG00000034278.4	ENSMUST00000038439.4	1008	11	24792	0	24792	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTACTTTTCTTCCTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	119014484	119002980	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_119003167_119009832_119009944_119010365_119010447_119010967_119011046_119011406_119011451_119014079_119014177_119014397
ONT_simulated_read_13541306	chr8	-	762	1	ISM	ENSMUSG00000031534.16	ENSMUST00000163774.3	1435	5	13480	0	13480	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTTGCATCATTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	22953391	22952629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_22952600_22953400
ONT_simulated_read_13541479	chr18	-	490	1	NIC	ENSMUSG00000024580.9	novel	4038	4	NA	NA	3727	128	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTCTACAGCGTCTTATT	NA	NA	NA	NA	NA	NA	NA	NA	61849199	61848709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_61848700_61849200
ONT_simulated_read_13541648	chr10	+	178	1	Antisense	novelGene_ENSMUSG00000040043.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAGGCATTAGCTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	127969192	127969370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr10_+_127969200_127969400
ONT_simulated_read_13542509	chr2	-	1952	9	ISM	ENSMUSG00000027635.16	ENSMUST00000103129.9	2080	11	1585	0	1585	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACTATGTGACAGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	156847410	156837184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087
ONT_simulated_read_13543475	chr13	-	654	5	ISM	ENSMUSG00000021368.16	ENSMUST00000179852.9	1246	8	6046	161	5910	-57	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGACAGCTCGTGACTA	NA	NA	NA	NA	NA	NA	NA	NA	43318914	43305376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754
ONT_simulated_read_13544581	chr8	-	125	1	ISM	ENSMUSG00000045636.17	ENSMUST00000059115.13	6548	14	140119	2569	23144	-63	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCTTTCCAGTCCCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	41446644	41446519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_41446500_41446600
ONT_simulated_read_1354465	chr3	+	488	1	FSM	ENSMUSG00000039617.9	ENSMUST00000117148.2	684	1	0	196	0	-196	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATATAACAAAACCCAAGG	NA	NA	NA	NA	NA	NA	NA	NA	21103728	21104216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_21103700_21104200
ONT_simulated_read_13545022	chr11	+	1661	9	FSM	ENSMUSG00000000378.16	ENST00000541586.5	1719	9	42	16	23	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAGTTGTCAAGCATTT	NA	NA	NA	NA	NA	NA	NA	NA	6496909	6546744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_6497030_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
ONT_simulated_read_13545981	chr8	-	619	1	ISM	ENSMUSG00000035569.18	ENST00000301030.10	9166	12	146128	12171	19861	174	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCAGCTCACTGTCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	123622865	123622246	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123622200_123622900
ONT_simulated_read_13547416	chr11	-	770	7	ISM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	3097	617	3097	-617	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACTCTTCGAGACATT	NA	NA	NA	NA	NA	NA	NA	NA	69560046	69558378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903
ONT_simulated_read_13547536	chr1	-	1177	8	ISM	ENSMUSG00000005501.15	ENST00000427112.6	3519	28	21286	24145	21286	-24145	internal_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATCATTTCTATTTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	87913885	87901798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_87901857_87903529_87903654_87906032_87906356_87907736_87907808_87908692_87908778_87909730_87909903_87911475_87911558_87913623
ONT_simulated_read_13547818	chr7	-	701	1	ISM	ENSMUSG00000035596.15	ENSMUST00000038608.14	2878	8	14686	348	14686	-348	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAAATGCCCTTGCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	3681836	3681135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_3681100_3681800
ONT_simulated_read_13550662	chr6	-	336	1	ISM	ENSMUSG00000029752.13	ENSMUST00000115542.8	2016	12	17367	0	13947	0	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	NA	NA	NA	NA	NA	NA	NA	NA	7675504	7675168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_7675200_7675500
ONT_simulated_read_13552260	chr11	+	1442	16	FSM	ENSMUSG00000034121.13	ENST00000313863.11	1580	16	-1	139	-1	-139	multi-exon	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGAGCCTCCCCCAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	87744052	87753801	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_87744156_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87753566_87753665_87753762
ONT_simulated_read_13553006	chr15	-	666	1	NIC	ENSMUSG00000022237.18	novel	7466	4	NA	NA	69318	1	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCGCGCAGCGTCCAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	31298131	31297465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_31297500_31298100
ONT_simulated_read_13553883	chr10	-	648	4	ISM	ENSMUSG00000001435.16	ENSMUST00000105409.8	4791	41	57881	304	57881	-126	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCTACAGGTCAGGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	76891658	76889153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_76889242_76889988_76890105_76890617_76890816_76891412
ONT_simulated_read_13555415	chrX	-	656	4	ISM	ENSMUSG00000019088.15	ENSMUST00000239458.2	1625	8	7303	247	7165	-145	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTCAGCAACAAGTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	73318039	73317069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_73317298_73317383_73317633_73317711_73317825_73317973
ONT_simulated_read_13556417	chr14	-	2889	4	ISM	ENSMUSG00000021938.13	ENSMUST00000022507.13	4114	9	29392	0	29392	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTGTTTTATTGGAAT	NA	NA	NA	NA	NA	NA	NA	NA	56986381	56958166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_56960738_56962762_56962933_56965976_56966035_56986291
ONT_simulated_read_1355852	chr5	-	927	3	ISM	ENSMUSG00000029726.17	ENSMUST00000031740.16	3128	4	3313	0	3313	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTCCAGCACTTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	137781612	137780167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137780747_137780856_137780984_137781391
ONT_simulated_read_13558894	chr19	+	2298	16	ISM	ENSMUSG00000024981.7	ENSMUST00000043150.6	4243	22	27170	488	27170	-488	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGTTGCTGTATGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	55268970	55285664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_55269052_55269767_55269801_55269881_55269934_55270904_55270979_55271739_55271818_55272834_55272970_55276259_55276395_55277236_55277333_55279577_55279651_55279849_55279939_55280204_55280322_55282018_55282163_55282633_55282736_55283264_55283337_55283804_55283955_55284797
ONT_simulated_read_13561132	chr5	-	790	4	ISM	ENSMUSG00000107283.4	ENSMUST00000201353.4	846	8	8578	-289	480	-131	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACCATCTGTAAAGAGATC	NA	NA	NA	NA	NA	NA	NA	NA	31302918	31298570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838
ONT_simulated_read_13562186	chr3	-	1224	1	ISM	ENSMUSG00000015711.9	ENSMUST00000015855.8	3140	8	26649	530	26315	-530	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATCCTCTGTCCCGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	95162738	95161514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95161500_95162700
ONT_simulated_read_1356238	chr19	-	1385	2	ISM	ENSMUSG00000025077.14	ENSMUST00000182276.2	4066	10	531	16148	531	-16148	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGTTCGTCAAGAGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	56536123	56533748	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_56534079_56535068
ONT_simulated_read_13566110	chr7	-	208	2	ISM	ENSMUSG00000008140.19	ENSMUST00000239015.2	1855	7	4495	889	4388	-716	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCTGTCCCCACATTTC	NA	NA	NA	NA	NA	NA	NA	NA	44141442	44140250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44140395_44141378
ONT_simulated_read_13568274	chr3	-	1100	8	ISM	ENSMUSG00000028126.17	ENST00000368890.8	3126	14	35617	1255	35617	154	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCCCCATTCTTTGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	94978255	94967129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_94967397_94967794_94967841_94970965_94971096_94972731_94972817_94973122_94973172_94974692_94974777_94975371_94975578_94978022
ONT_simulated_read_13568403	chr2	-	591	1	Genic_Genomic	ENSMUSG00000039128.14	novel	NA	NA	NA	NA	50041	3	mono-exon	FALSE	NA	NA	NA	NA	NA	238	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTCTGGTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	5799692	5799101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr2_-_5799100_5799700
ONT_simulated_read_13568595	chr5	-	692	1	NIC	ENSMUSG00000039753.17	novel	2801	11	NA	NA	36726	-61	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAAATTCCACAATTG	NA	NA	NA	NA	NA	NA	NA	NA	43902718	43902026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_43902000_43902700
ONT_simulated_read_13569708	chr7	-	1302	4	ISM	ENSMUSG00000070426.13	ENSMUST00000106953.8	2545	9	31344	-584	31344	-396	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAAGCCTAAGAGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	101678339	101668754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218
ONT_simulated_read_13572378	chr2	-	595	5	ISM	ENSMUSG00000039686.15	ENSMUST00000044751.14	4100	16	16812	5493	16812	-5493	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGCGACCTCAGTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	29997654	29992787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_29992857_29993328_29993449_29993550_29993593_29994818_29995035_29997506
ONT_simulated_read_1357299	chr17	-	847	1	NIC	ENSMUSG00000024018.19	novel	7117	5	NA	NA	12557	-274	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATGTTAGTCACACAGAC	NA	NA	NA	NA	NA	NA	NA	NA	29923426	29922579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_29922600_29923400
ONT_simulated_read_13574371	chr7	+	1608	12	ISM	ENSMUSG00000006649.18	ENST00000353632.6	3561	27	2603	15819	2603	-15817	internal_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACAGCACCAGCTCAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	30162349	30170324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_30162412_30162576_30162735_30162936_30163082_30163202_30163328_30164890_30165078_30165176_30165307_30165433_30165607_30166644_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272
ONT_simulated_read_13574622	chr17	-	742	1	ISM	ENSMUSG00000024190.8	ENSMUST00000025025.7	1990	4	1895	293	1848	-292	mono-exon	FALSE	NA	NA	NA	NA	NA	288	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTGTAGGTCGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	26725598	26724856	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_26724900_26725600
ONT_simulated_read_13577537	chr12	+	495	2	ISM	ENSMUSG00000036333.12	ENST00000473731.5	5271	28	71733	809	71733	-809	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCCAGACAGACTTGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	25103990	25107032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_25104034_25106580
ONT_simulated_read_13580625	chr5	+	680	1	FSM	ENSMUSG00000106891.2	ENSMUST00000202491.2	1057	1	0	377	0	-377	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGGGGGGAGCAAATTGGA	NA	NA	NA	NA	NA	NA	NA	NA	147365639	147366319	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_147365600_147366300
ONT_simulated_read_13582099	chr1	-	584	4	ISM	ENSMUSG00000026491.14	ENST00000366508.5	8234	34	30957	18037	30957	-17969	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCCTCTGGATGTC	NA	NA	NA	NA	NA	NA	NA	NA	179595946	179590427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_179590528_179591034_179591239_179593442_179593636_179595859
ONT_simulated_read_13582446	chr2	-	1191	1	ISM	ENSMUSG00000074825.5	ENSMUST00000132773.2	3424	3	1723	1757	871	0	mono-exon	FALSE	NA	NA	NA	NA	NA	275	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATAGGTATTGCTGATTCC	NA	NA	NA	NA	NA	NA	NA	NA	126983639	126982448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_126982400_126983600
ONT_simulated_read_13582625	chr2	-	369	1	ISM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	27483	1277	26358	-1270	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACGCTGAAGGCACAATGG	NA	NA	NA	NA	NA	NA	NA	NA	75507502	75507133	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_75507100_75507500
ONT_simulated_read_13584614	chr2	+	1194	8	ISM	ENSMUSG00000039205.17	ENSMUST00000113338.9	2666	16	8507	1	8507	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGTCCCCACCAGCAC	NA	NA	NA	NA	NA	NA	NA	NA	32262328	32268309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
ONT_simulated_read_13586628	chr1	+	1725	4	ISM	ENSMUSG00000026174.10	ENSMUST00000087215.7	3268	8	17469	710	17469	-710	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATCCAACTCTAGAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	74562685	74569291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_74562773_74566150_74566250_74566750_74566843_74567844
ONT_simulated_read_1358713	chr5	+	638	6	ISM	ENSMUSG00000029141.17	ENSMUST00000201858.4	2109	8	589	2744	308	-2744	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGATTTTTATGATAGTG	NA	NA	NA	NA	NA	NA	NA	NA	31684944	31691422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388
ONT_simulated_read_13588537	chr6	-	959	5	ISM	ENSMUSG00000030220.14	ENSMUST00000111892.8	1153	6	7747	111	7747	-111	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAGACACTGTAAACAACA	NA	NA	NA	NA	NA	NA	NA	NA	136910754	136900763	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_136901325_136903669_136903734_136906609_136906687_136909257_136909342_136910581
ONT_simulated_read_13591058	chr13	+	799	6	ISM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	85	10885	18	-8208	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	223	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGATACGGTAAAAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	3588147	3606986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925
ONT_simulated_read_13594832	chr4	-	3053	13	ISM	ENSMUSG00000037443.14	ENSMUST00000040271.12	3893	14	14261	641	14130	-633	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTAAGGCTGGGCGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	133900162	133857809	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894753_133900123
ONT_simulated_read_13595072	chr5	-	864	8	ISM	ENSMUSG00000029472.14	ENSMUST00000199406.5	2413	17	14929	4138	14929	-4134	internal_fragment	TRUE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTGTCAGAAGCTAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	122944414	122929927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307
ONT_simulated_read_13595336	chr2	+	480	1	ISM	ENSMUSG00000033705.18	ENSMUST00000180041.9	15004	32	72220	14061	69920	-189	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAAGAGTGCCTTGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	120531821	120532301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_120531800_120532300
ONT_simulated_read_13595593	chr17	+	2393	18	ISM	ENSMUSG00000001870.17	ENSMUST00000112514.2	4870	30	111065	1757	111065	-1757	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGTGTCGGTAAGAATGA	NA	NA	NA	NA	NA	NA	NA	NA	75596970	75696564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_75597136_75598285_75598412_75599750_75599874_75603218_75603339_75617150_75617274_75619970_75620094_75621997_75622121_75627965_75628089_75634191_75634318_75655738_75655865_75659681_75659826_75666284_75666465_75667706_75667794_75669504_75669634_75670332_75670474_75671333_75671505_75692067_75692191_75696424
ONT_simulated_read_13595650	chr6	-	1717	13	ISM	ENSMUSG00000029676.16	ENSMUST00000166445.8	1923	15	3389	1348	31	-1348	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCATGGATATGATATGTC	NA	NA	NA	NA	NA	NA	NA	NA	25794627	25745927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558
ONT_simulated_read_13598342	chr9	-	1447	1	ISM	ENSMUSG00000062794.9	ENSMUST00000086281.5	3574	5	9370	1649	9370	-1649	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATGCAAAATACAAAGATGC	NA	NA	NA	NA	NA	NA	NA	NA	22161821	22160374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_22160400_22161800
ONT_simulated_read_13603205	chr10	-	2252	16	ISM	ENSMUSG00000020115.4	ENST00000652657.1	2700	18	6697	176	6697	-136	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTAGGTGAATTATTGA	NA	NA	NA	NA	NA	NA	NA	NA	121407930	121382550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_121383094_121387391_121387499_121388104_121388202_121388312_121388415_121388933_121388974_121389649_121389727_121389807_121389930_121391891_121391971_121393106_121393209_121395751_121395844_121396145_121396205_121397481_121397679_121399830_121400011_121403933_121404045_121406535_121406697_121407747
ONT_simulated_read_13603241	chr15	-	339	1	ISM	ENSMUSG00000079020.10	ENSMUST00000151288.8	7509	8	42653	4329	14438	-196	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTCCACACTGGAGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	73453940	73453601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_73453600_73453900
ONT_simulated_read_13609650	chr10	-	1438	6	ISM	ENSMUSG00000034748.17	ENSMUST00000042923.9	1891	8	1898	0	1421	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTGTTACATTTATGTA	NA	NA	NA	NA	NA	NA	NA	NA	81461733	81457620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549
ONT_simulated_read_1361000	chr6	-	1166	1	ISM	ENSMUSG00000034312.16	ENSMUST00000101153.10	8036	14	55541	3735	33858	-225	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTACACTTCTATTTAC	NA	NA	NA	NA	NA	NA	NA	NA	90637970	90636804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_90636800_90638000
ONT_simulated_read_13610306	chr5	+	2258	4	ISM	ENSMUSG00000031558.16	ENSMUST00000174313.8	7734	37	23	305131	20	-305131	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTAGACACTCAAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	48140518	48157722	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_48142561_48145180_48145253_48146461_48146534_48157650
ONT_simulated_read_13611789	chr6	+	1114	8	NIC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGGGTGGGACAATGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	124689298	124693792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124693568
ONT_simulated_read_1361320	chr8	-	372	4	ISM	ENSMUSG00000035824.8	ENST00000569718.6	466	6	4629	-38	4629	38	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	277	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGCCAGGTTAGCTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	104965453	104954844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_104954984_104955844_104955926_104963403_104963478_104965375
ONT_simulated_read_13619247	chr17	-	1044	1	ISM	ENSMUSG00000024426.18	ENSMUST00000141662.8	2034	11	9185	0	9185	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTTCGTTTGTGCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	36211752	36210708	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_36210700_36211800
ONT_simulated_read_13620206	chr4	-	387	1	ISM	ENSMUSG00000028394.10	ENSMUST00000030091.10	1805	4	969	1064	969	-1064	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCTGAGTGACTACATAG	NA	NA	NA	NA	NA	NA	NA	NA	62442336	62441949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_62441900_62442300
ONT_simulated_read_13624264	chr16	-	215	1	ISM	ENSMUSG00000022863.16	ENSMUST00000023570.14	1414	5	16310	426	16310	-426	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATGTCATGTTGCTAGA	NA	NA	NA	NA	NA	NA	NA	NA	78157388	78157173	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_78157200_78157400
ONT_simulated_read_13625218	chr7	-	139	1	ISM	ENSMUSG00000038570.16	ENSMUST00000056728.5	2783	3	4674	10751	1983	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCGGCCTGTGGAAAGACA	NA	NA	NA	NA	NA	NA	NA	NA	82293057	82292918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_82292900_82293100
ONT_simulated_read_13628574	chr9	+	797	9	ISM	ENSMUSG00000032564.17	ENSMUST00000057742.15	3959	16	303196	26961	302892	-26961	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCACTATATCCACCCTT	NA	NA	NA	NA	NA	NA	NA	NA	104749877	104884782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_104750058_104777416_104777489_104778642_104778718_104799691_104799776_104802948_104803039_104866770_104866870_104870326_104870414_104871026_104871087_104884732
ONT_simulated_read_13631526	chr16	-	634	7	ISM	ENSMUSG00000013539.15	ENSMUST00000115628.10	1622	9	27349	705	7762	-104	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGCAAATGGCCACGTGA	NA	NA	NA	NA	NA	NA	NA	NA	18134557	18119395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509
ONT_simulated_read_13635340	chr2	-	960	5	ISM	ENSMUSG00000026727.11	ENST00000345264.10	1640	8	51892	401	5277	-87	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	316	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTGTGCCTTATTAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	13223939	13081909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819
ONT_simulated_read_13645332	chr15	-	1146	2	ISM	ENSMUSG00000022305.14	ENSMUST00000022916.13	4109	7	64893	5586	64893	-5572	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGAGGCTCCTCCCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	39742291	39739570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_39739616_39741190
ONT_simulated_read_13648966	chr3	-	1064	12	ISM	ENSMUSG00000027893.15	ENST00000359172.3	2426	17	11759	609	11759	-609	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTTAAGATAACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	107579453	107572372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_107572430_107572831_107572953_107574457_107574537_107574955_107575025_107575382_107575482_107575565_107575661_107575982_107576054_107576408_107576498_107577207_107577272_107577519_107577637_107578453_107578561_107579357
ONT_simulated_read_13652554	chr8	-	1932	5	ISM	ENSMUSG00000001910.6	ENSMUST00000001975.6	4344	6	10651	2183	10651	-2183	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACCTGCAGGGGTGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	85403880	85399290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85399934_85401393_85401492_85401627_85401734_85402713_85402888_85402969
ONT_simulated_read_13655040	chr6	-	376	1	ISM	ENSMUSG00000029708.10	ENSMUST00000090511.4	4650	2	2450	2808	2450	-1070	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTACTACCAACAGGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	28419273	28418897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_28418900_28419300
ONT_simulated_read_13657782	chr5	-	552	6	NNC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	2217	-1095	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGAACACCCATGGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	124714977	124709370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712656_124712774_124714860
ONT_simulated_read_13658417	chr8	+	848	1	ISM	ENSMUSG00000070047.15	ENSMUST00000191428.7	14814	27	14767	101196	0	-100348	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGGTGCCAACGGGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	45403250	45404098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_45403200_45404100
ONT_simulated_read_13660205	chr14	-	777	6	ISM	ENSMUSG00000041594.19	ENST00000328767.9	2047	15	0	23349	0	-23349	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTGGAGGGTAATTGCT	NA	NA	NA	NA	NA	NA	NA	NA	123215706	123180660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_123180770_123182085_123182251_123182919_123183013_123187900_123188002_123200709_123200798_123215485
ONT_simulated_read_13662787	chr12	+	1359	1	FSM	ENSMUSG00000021908.11	ENSMUST00000022467.11	1878	1	0	519	0	-519	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTATGGAACCTAAATCTGA	NA	NA	NA	NA	NA	NA	NA	NA	119224712	119226071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_119224700_119226100
ONT_simulated_read_13665083	chr10	+	489	4	ISM	ENSMUSG00000019878.9	ENSMUST00000079833.6	2604	12	29	15564	0	-15293	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTTCAAATAAAACAAGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	57362520	57373667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_57362698_57371993_57372103_57372250_57372379_57373592
ONT_simulated_read_13665463	chr7	+	708	5	ISM	ENSMUSG00000097320.9	ENSMUST00000180820.8	1276	6	3127	0	3127	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCAGCTTGTTCATATTT	NA	NA	NA	NA	NA	NA	NA	NA	30432130	30445354	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_30432187_30434128_30434194_30435240_30435388_30436725_30436785_30444973
ONT_simulated_read_13667286	chr7	+	635	4	ISM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	13462	329	13462	-329	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1854	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGAGCTGGCCCTGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	142619937	142621342	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_142620090_142620397_142620500_142620883_142620971_142621048
ONT_simulated_read_13667409	chr19	+	921	6	ISM	ENSMUSG00000024776.19	ENSMUST00000239240.2	1988	11	0	6289	0	-6287	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGCAACTAGAGTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	34169628	34211444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_34169996_34197586_34197667_34203941_34204160_34207492_34207569_34208830_34208927_34211360
ONT_simulated_read_13668230	chr9	-	1012	6	ISM	ENSMUSG00000032366.16	ENSMUST00000113695.8	1607	8	9813	232	9720	-209	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	2901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTCTGAGATTCCAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	66941271	66930105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157
ONT_simulated_read_13668235	chr3	-	620	6	ISM	ENSMUSG00000005625.16	ENSMUST00000117355.2	1756	9	6654	1010	6654	-1010	internal_fragment	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTGGGCTTCCAGACCT	NA	NA	NA	NA	NA	NA	NA	NA	94943200	94941025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120
ONT_simulated_read_13669227	chr15	-	1923	1	ISM	ENSMUSG00000022565.16	ENSMUST00000054449.14	15018	33	21470	5469	17345	-5467	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCCCCGAGAACAGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	76062565	76060642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76060600_76062600
ONT_simulated_read_13669775	chr16	-	616	6	ISM	ENSMUSG00000000028.16	ENSMUST00000000028.14	2143	20	107	26909	107	-26903	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGAGGATGAAGATCTTT	NA	NA	NA	NA	NA	NA	NA	NA	18630615	18626105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264_18630460_18630553
ONT_simulated_read_1367253	chr6	-	194	2	ISM	ENSMUSG00000032667.18	ENSMUST00000057792.9	2409	9	25309	8257	25309	-8257	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGGAAATTTTTAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	5273146	5272403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_5272452_5273000
ONT_simulated_read_13673165	chr11	-	835	7	ISM	ENSMUSG00000020523.15	ENST00000351797.9	1267	12	6559	7038	6559	-6318	internal_fragment	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGAATTCCTGCTCGCGG	NA	NA	NA	NA	NA	NA	NA	NA	57398454	57380935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318
ONT_simulated_read_13677184	chr14	+	848	8	ISM	ENSMUSG00000039197.11	ENST00000673027.1	1134	10	-41	66436	0	-66436	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTTCCAAAGGTGAACT	NA	NA	NA	NA	NA	NA	NA	NA	21126219	21431605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_21126390_21142434_21142510_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21419138_21419175_21431570
ONT_simulated_read_13678030	chr7	-	1453	1	ISM	ENSMUSG00000074364.7	ENSMUST00000098799.5	5119	6	16787	2370	16787	-2370	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGGTTGGGAACCAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	15684705	15683252	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_15683300_15684700
ONT_simulated_read_13680076	chr19	-	561	3	ISM	ENSMUSG00000007338.11	ENSMUST00000007482.8	1764	4	706	1076	679	-801	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCATAAAGTACAAGTAGAC	NA	NA	NA	NA	NA	NA	NA	NA	6107109	6104727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6105013_6105105_6105231_6106958
ONT_simulated_read_13680137	chr18	-	474	1	ISM	ENSMUSG00000090523.3	ENSMUST00000174459.2	2180	3	29842	1397	5226	73	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGAAGTCCTCCTCAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	32663245	32662771	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_32662800_32663200
ONT_simulated_read_13680802	chr9	-	1106	13	ISM	ENSMUSG00000023262.14	ENSMUST00000024031.13	1529	15	1397	96	815	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGCTTCCAACTCTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	106314121	106310275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087
ONT_simulated_read_13682772	chr10	-	2016	11	NNC	ENSMUSG00000036112.16	novel	2551	12	NA	NA	-153	-107	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATATTCTTACTTGGATGC	NA	NA	NA	NA	NA	NA	NA	NA	93725829	93696908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722961_93725399
ONT_simulated_read_13684097	chr5	-	884	8	ISM	ENSMUSG00000029472.14	ENSMUST00000197074.5	2413	17	13937	5728	13937	-5720	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGTGTATACAGGTAAGA	NA	NA	NA	NA	NA	NA	NA	NA	122945406	122931513	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_122931622_122932479_122932555_122937401_122937538_122938513_122938672_122940192_122940283_122940885_122940968_122944307_122944499_122945362
ONT_simulated_read_136842	chr1	+	964	8	FSM	ENSMUSG00000034343.15	ENST00000414443.5	1431	8	33	434	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTGGCAATAAGAAACCC	NA	NA	NA	NA	NA	NA	NA	NA	91178058	91213462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_91178160_91181981_91182116_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ONT_simulated_read_1368575	chr19	+	269	1	ISM	ENSMUSG00000024924.15	ENSMUST00000172302.8	3855	18	337	32237	0	-32102	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCGCGCTGGGCGCTGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	27194756	27195025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_27194800_27195000
ONT_simulated_read_13689476	chr1	-	609	1	ISM	ENSMUSG00000038079.15	ENSMUST00000094917.10	1869	13	18896	0	18608	0	mono-exon	FALSE	NA	NA	NA	NA	NA	211	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATTAACTGAAGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	59140357	59139748	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_59139700_59140400
ONT_simulated_read_13689538	chr6	-	765	6	ISM	ENSMUSG00000004980.17	ENSMUST00000069949.13	1647	10	3490	189	3368	3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	51443384	51438100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_51438414_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282
ONT_simulated_read_13691269	chr11	+	148	1	ISM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	0	20879	0	-20879	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGGCGCCAAGTTCGACG	NA	NA	NA	NA	NA	NA	NA	NA	83832887	83833035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_83832900_83833000
ONT_simulated_read_13691306	chr11	-	856	7	ISM	ENSMUSG00000020692.15	ENSMUST00000103213.10	1783	13	3439	225	3408	-225	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCTGCCAGAGACCAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	82795798	82791818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617
ONT_simulated_read_13692035	chr2	+	966	10	ISM	ENSMUSG00000027411.18	ENSMUST00000028900.11	3161	24	15265	2419	15265	-1812	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGGAGTTGGGCAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	130281549	130283770	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_130281635_130281760_130281838_130282150_130282283_130282371_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713
ONT_simulated_read_13693922	chr5	-	436	1	ISM	ENSMUSG00000029190.20	ENSMUST00000031091.13	6677	9	22704	72313	22704	-1399	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCAGTCTTCTGCTGCAT	NA	NA	NA	NA	NA	NA	NA	NA	36830577	36830141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_36830100_36830600
ONT_simulated_read_13694192	chr17	-	729	1	NIC	ENSMUSG00000060475.14	novel	2060	8	NA	NA	16742	-1170	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACTTACTTATGCTAAG	NA	NA	NA	NA	NA	NA	NA	NA	13194337	13193608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_13193600_13194300
ONT_simulated_read_13695041	chr9	-	933	1	ISM	ENSMUSG00000032355.17	ENSMUST00000185144.8	2921	11	116834	128016	8724	-65332	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAGCAACACAACCTCACC	NA	NA	NA	NA	NA	NA	NA	NA	77138311	77137378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_77137400_77138300
ONT_simulated_read_13695260	chr10	-	712	7	ISM	ENSMUSG00000019961.18	ENST00000575258.1	1183	9	5122	2293	5122	-2293	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAGGGATATTCTTAAGG	NA	NA	NA	NA	NA	NA	NA	NA	91001903	90987630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_90987660_90988489_90988601_90988946_90989043_90989139_90989260_90994609_90994708_90999904_91000064_91001804
ONT_simulated_read_13696153	chr18	-	732	5	ISM	ENSMUSG00000057766.15	ENSMUST00000234183.2	1552	9	29902	427	29838	223	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGACATGATTTCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	12408857	12387415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_12387759_12393990_12394090_12395168_12395265_12401506_12401606_12408762
ONT_simulated_read_13697163	chr15	+	449	1	ISM	ENSMUSG00000022255.17	ENSMUST00000022865.17	6919	12	6	62451	6	-58158	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCGGGCTGGGTGATCCT	NA	NA	NA	NA	NA	NA	NA	NA	34082870	34083319	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_34082900_34083300
ONT_simulated_read_13698450	chr19	-	1439	6	ISM	ENSMUSG00000024955.16	ENST00000405666.5	2296	7	887	585	28	186	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGCCAGGAAAGTGAATG	NA	NA	NA	NA	NA	NA	NA	NA	6897739	6888932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6889379_6889722_6889993_6890083_6890252_6891187_6891317_6891446_6891564_6897430
ONT_simulated_read_13700230	chrX	-	734	7	ISM	ENSMUSG00000031388.15	ENSMUST00000114387.8	979	8	517	113	457	-80	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTCAAAGACAGCTCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	72964977	72960605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_72960889_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877
ONT_simulated_read_1370035	chr12	-	2925	1	FSM	ENSMUSG00000113864.2	ENSMUST00000222952.2	3964	1	0	1039	0	-1039	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGCTGAGCAAACTGGC	NA	NA	NA	NA	NA	NA	NA	NA	100410919	100407994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_100408000_100410900
ONT_simulated_read_13702390	chr11	+	1782	4	ISM	ENSMUSG00000046311.14	ENSMUST00000109197.8	4029	5	9190	2213	0	-1950	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGATTCATACAAGGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	49103514	49107430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_49103604_49104416_49104470_49105381_49105482_49105890
ONT_simulated_read_13703275	chr1	+	868	6	ISM	ENSMUSG00000047443.15	ENSMUST00000086861.12	2815	8	0	3530	0	-3530	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCCAGTCTCTCTGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	91294151	91298409	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_91294371_91296086_91296204_91297092_91297196_91297807_91298065_91298136_91298246_91298346
ONT_simulated_read_13707620	chr2	-	568	1	ISM	ENSMUSG00000063235.19	ENSMUST00000111461.13	1316	4	6765	0	6765	0	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGGGACTCCCCTCACA	NA	NA	NA	NA	NA	NA	NA	NA	90741624	90741056	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_90741100_90741600
ONT_simulated_read_13709700	chr9	-	753	11	ISM	ENSMUSG00000023262.14	ENSMUST00000216400.2	1030	12	815	137	815	-137	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCGCACACCTGTCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	106314121	106310412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106313373_106313420_106313894_106314000_106314087
ONT_simulated_read_13712139	chr18	-	752	1	ISM	ENSMUSG00000006740.15	ENSMUST00000025083.14	6032	26	37842	1928	37842	-1928	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAATACAAATATCTTACAT	NA	NA	NA	NA	NA	NA	NA	NA	6203681	6202929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_6202900_6203700
ONT_simulated_read_13712864	chr5	+	208	1	FSM	ENSMUSG00000043618.10	ENSMUST00000135410.2	447	1	0	239	0	-239	mono-exon	FALSE	NA	NA	NA	NA	NA	6224	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATATCTGCCCGTCGACT	NA	NA	NA	NA	NA	NA	NA	NA	90280087	90280295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_90280100_90280300
ONT_simulated_read_1371433	chr12	+	3422	17	FSM	ENSMUSG00000007411.17	ENST00000679330.1	3458	17	25	11	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGTGTTTTTCTAAG	NA	NA	NA	NA	NA	NA	NA	NA	111540956	111622594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613123_111613283_111613904_111614163_111621703
ONT_simulated_read_13718553	chr7	-	993	5	ISM	ENSMUSG00000040488.19	ENST00000396819.8	4684	30	24555	-1	24545	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGCGCCAAATCTCCCACT	NA	NA	NA	NA	NA	NA	NA	NA	27008493	27004817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345
ONT_simulated_read_13720158	chr17	+	1774	6	ISM	ENSMUSG00000002307.17	ENSMUST00000079421.15	2581	8	53	2150	53	-2142	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCAGTGGAGAGCAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	34128471	34132414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246
ONT_simulated_read_1372119	chr14	-	1160	1	ISM	ENSMUSG00000033487.15	ENSMUST00000089017.12	6143	26	169542	1356	62554	-1351	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGTATGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	72777901	72776741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_72776700_72777900
ONT_simulated_read_13723319	chr7	-	886	8	ISM	ENSMUSG00000030403.10	ENSMUST00000032561.9	2215	13	10741	575	10741	-575	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCCTTTCCCTTCACCA	NA	NA	NA	NA	NA	NA	NA	NA	18995001	18991428	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748
ONT_simulated_read_13723456	chr11	+	689	4	FSM	ENSMUSG00000002059.19	ENST00000636513.1	689	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGAGGATGCCAGAACA	NA	NA	NA	NA	NA	NA	NA	NA	78079747	78081563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_78080217_78081114_78081217_78081303_78081369_78081510
ONT_simulated_read_13723937	chr17	-	1045	9	ISM	ENSMUSG00000012296.17	ENSMUST00000012440.14	2426	10	571	1330	560	-1324	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGAGTACTGCAGGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	46593365	46570126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46593271
ONT_simulated_read_1372470	chr13	-	185	1	ISM	ENSMUSG00000021306.12	ENSMUST00000220628.2	3634	7	32576	2248	32566	-2248	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATCTCGTTCATTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	13535633	13535448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_13535400_13535600
ONT_simulated_read_13725660	chr13	-	1458	7	ISM	ENSMUSG00000038546.10	ENSMUST00000222651.2	1951	14	57588	-201	57588	201	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATGTGTACTGTAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	43574795	43556538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_43557166_43560087_43560200_43565886_43566039_43567458_43567581_43569800_43569946_43573051_43573243_43574686
ONT_simulated_read_13729189	chr10	-	981	7	ISM	ENSMUSG00000035781.15	ENSMUST00000171416.2	1543	9	3295	547	3295	-547	internal_fragment	FALSE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCCCTGTGTTTTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	79749545	79746618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_79746974_79747775_79747832_79747908_79747995_79748229_79748316_79748482_79748604_79749058_79749181_79749390
ONT_simulated_read_13729534	chr4	+	513	7	ISM	ENSMUSG00000028524.22	ENST00000424320.6	1384	12	110176	1571	110039	-1571	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCACCCCCTTAGTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	102727760	102784678	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_102727922_102766004_102766030_102766934_102766987_102768655_102768742_102772255_102772349_102775977_102776053_102784657
ONT_simulated_read_13731598	chr10	+	729	1	NIC	ENSMUSG00000035311.17	novel	5390	21	NA	NA	54135	-13240	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTAGAGCTAGCCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	88269222	88269951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_+_88269200_88270000
ONT_simulated_read_13733044	chr17	+	342	1	FSM	ENSMUSG00000075770.3	ENSMUST00000101824.3	77	1	0	-265	0	265	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATAGGACGGGTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	35461653	35461995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_35461700_35462000
ONT_simulated_read_1373581	chr15	-	704	7	ISM	ENSMUSG00000023021.16	ENSMUST00000109035.11	2775	11	26516	2664	26516	-1953	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGCATCTGGCTTCTAGT	NA	NA	NA	NA	NA	NA	NA	NA	99643827	99635425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_99635535_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769
ONT_simulated_read_1373778	chr1	-	752	1	ISM	ENSMUSG00000026398.15	ENSMUST00000027649.14	4733	9	114751	2375	103865	368	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTTAAGGACTTCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	136773435	136772683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_136772700_136773400
ONT_simulated_read_1373992	chr6	-	698	1	FSM	ENSMUSG00000072476.7	ENSMUST00000097218.7	2353	1	1655	0	1655	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTCACGAGGAAGTGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	76473112	76472414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_76472400_76473100
ONT_simulated_read_13740016	chr14	+	1099	6	ISM	ENSMUSG00000047098.19	ENSMUST00000019443.15	3485	21	759	7962	299	-7933	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCTCCAGCTCGTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	55829923	55833188	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_55830074_55830289_55830350_55830462_55830533_55831751_55831930_55832379_55832759_55832926
ONT_simulated_read_13743907	chr6	+	1265	5	ISM	ENSMUSG00000029769.17	ENSMUST00000154619.5	3356	15	12083	7474	12083	-7474	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTTGGAGCCTTAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	29414950	29419382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_29414980_29415429_29415655_29417070_29417578_29417930_29418153_29419100
ONT_simulated_read_13746795	chr2	+	739	7	ISM	ENSMUSG00000027509.12	ENSMUST00000029013.10	1742	12	7	7477	7	-7477	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATCCTATGATGGTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	172841916	172850055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_172842170_172844451_172844547_172845299_172845405_172846952_172847046_172848673_172848761_172849852_172849940_172850036
ONT_simulated_read_13746900	chr8	-	294	2	ISM	ENSMUSG00000051648.14	ENST00000304372.6	2925	15	14667	9115	14667	-9115	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGCAGACTATACATCAC	NA	NA	NA	NA	NA	NA	NA	NA	106120590	106118554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_106118716_106120457
ONT_simulated_read_13748969	chr18	+	975	10	FSM	ENSMUSG00000024423.7	ENST00000519677.1	934	10	-41	0	-41	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACGAACACTCCTGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	13107730	13122921	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_13107899_13109035_13109089_13109525_13109589_13110628_13110725_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801
ONT_simulated_read_13750073	chrX	-	685	1	ISM	ENSMUSG00000041096.14	ENSMUST00000044509.7	2696	7	4886	0	4886	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTCTTGGAGTCTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	151120535	151119850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_151119800_151120500
ONT_simulated_read_13750518	chr9	+	816	6	ISM	ENSMUSG00000032540.17	ENST00000644371.2	2245	8	57	1919	57	-950	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGCCAAACGGCCAATGC	NA	NA	NA	NA	NA	NA	NA	NA	122180853	122207925	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_122180905_122194200_122194287_122196953_122197327_122204970_122205126_122206923_122207036_122207886
ONT_simulated_read_13751287	chr14	-	341	1	ISM	ENSMUSG00000059674.8	ENST00000487137.7	3372	13	8758	1008	8758	-1008	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCCCTGGGCTCGGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	54870036	54869695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_54869700_54870000
ONT_simulated_read_13753385	chr17	+	536	4	ISM	ENSMUSG00000024308.16	ENSMUST00000234247.2	2589	8	6481	1015	6481	-1015	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTTTTTGTTTGTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	34145091	34147250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34145324_34145401_34145492_34145603_34145681_34147113
ONT_simulated_read_13755327	chr14	-	432	2	ISM	ENSMUSG00000022119.16	ENSMUST00000163545.8	3270	22	59765	0	59765	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTATTACATACTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	105354531	105352400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_105352723_105354421
ONT_simulated_read_13761466	chr17	-	624	5	ISM	ENSMUSG00000024426.18	ENSMUST00000056034.13	1930	10	1382	860	1382	-860	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTCTTACCACAGAAGAC	NA	NA	NA	NA	NA	NA	NA	NA	36219555	36211603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_36211765_36212259_36212504_36212874_36212947_36215181_36215228_36219454
ONT_simulated_read_13762877	chrX	-	2433	4	ISM	ENSMUSG00000039231.19	ENSMUST00000115637.8	2778	6	3008	56	3008	-56	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCTCAGCCCTCCCTAGC	NA	NA	NA	NA	NA	NA	NA	NA	7937489	7927729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826
ONT_simulated_read_137629	chr13	-	359	3	ISM	ENSMUSG00000033102.16	ENSMUST00000109769.10	2886	14	39460	1182	39460	-1180	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAGCTTCTTACCACAT	NA	NA	NA	NA	NA	NA	NA	NA	64356996	64344353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_64344490_64353084_64353232_64356920
ONT_simulated_read_13763412	chr7	+	274	3	ISM	ENSMUSG00000110195.2	ENST00000376450.7	3260	21	21	28245	21	-27258	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCAGACTGGTGTGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	101100522	101133779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_101100676_101130577_101130668_101133748
ONT_simulated_read_13764614	chr10	+	390	3	ISM	ENSMUSG00000019762.5	ENST00000229447.9	1077	5	123	7188	48	-7188	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGCCCTGGACCTTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	3490287	3497028	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_3490462_3495509_3495702_3497004
ONT_simulated_read_13765296	chr7	+	1049	9	ISM	ENSMUSG00000018819.11	ENSMUST00000038946.9	1828	11	308	4177	0	-4177	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGTAGGGCTCTATGTGA	NA	NA	NA	NA	NA	NA	NA	NA	142025887	142044159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_142026102_142038215_142038363_142040083_142040243_142042155_142042253_142042584_142042678_142042865_142042910_142043061_142043144_142043636_142043772_142044081
ONT_simulated_read_13765395	chr18	-	1120	7	ISM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	11252	786	11159	459	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGACTTCCTGTTGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	64638427	64633514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227
ONT_simulated_read_13767009	chr11	+	983	7	ISM	ENSMUSG00000020873.16	ENSMUST00000021243.16	1523	9	65	1424	65	-1424	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTTTGGCCTGACCAGT	NA	NA	NA	NA	NA	NA	NA	NA	95275582	95281178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103
ONT_simulated_read_13768335	chr8	-	1599	1	ISM	ENSMUSG00000110656.2	ENSMUST00000212077.2	1979	2	4265	191	4230	-118	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTCTGTCCCCAGTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	123173796	123172197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123172200_123173800
ONT_simulated_read_13774102	chr11	-	1088	5	ISM	ENSMUSG00000017677.12	ENST00000348811.6	1392	7	10042	-81	10042	81	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGGAAATGGAATTGGTCA	NA	NA	NA	NA	NA	NA	NA	NA	79135390	79130697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288
ONT_simulated_read_13774693	chr4	-	1406	1	ISM	ENSMUSG00000029020.14	ENSMUST00000105716.9	4241	19	29266	417	29266	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTAATGGAAAGACAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	147959878	147958472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_147958500_147959900
ONT_simulated_read_13775404	chr10	+	536	1	FSM	ENSMUSG00000072837.3	ENSMUST00000102105.3	121	1	0	-415	0	415	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTATAACCCCCCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	126834308	126834844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_126834300_126834800
ONT_simulated_read_13776079	chr8	-	622	1	NIC	ENSMUSG00000033282.15	novel	7197	24	NA	NA	90138	-2639	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCCTCTTTAAAATGCTA	NA	NA	NA	NA	NA	NA	NA	NA	91946918	91946296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_91946300_91946900
ONT_simulated_read_13777702	chr7	-	843	2	ISM	ENSMUSG00000047649.10	ENSMUST00000047036.10	2239	3	281	1271	281	-1271	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCACAGGTCATTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	19093125	19091209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_19091942_19093014
ONT_simulated_read_1378004	chr11	+	537	1	ISM	ENSMUSG00000032740.18	ENSMUST00000040182.13	9376	32	119	136495	0	-49098	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCCGCCCCCTCCTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	29323776	29324313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_29323800_29324300
ONT_simulated_read_13781905	chr9	-	1355	1	ISM	ENSMUSG00000040433.17	ENSMUST00000152594.8	7406	6	63826	4881	42670	-2228	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCGTGTGCAAACGTAGTT	NA	NA	NA	NA	NA	NA	NA	NA	96571058	96569703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_96569700_96571100
ONT_simulated_read_13784396	chr11	-	195	2	ISM	ENSMUSG00000020358.18	ENSMUST00000109103.4	1437	8	4997	211	4997	-211	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACCGCACACGCTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	51492677	51492211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_51492306_51492576
ONT_simulated_read_13785132	chrX	+	786	7	ISM	ENSMUSG00000000838.18	ENST00000621453.4	1838	15	9	17734	0	-17734	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATACTGAGAAATGAAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	67722229	67741533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453
ONT_simulated_read_13791617	chr17	-	287	1	ISM	ENSMUSG00000033278.11	ENSMUST00000037974.10	5186	33	396971	289869	396971	-195741	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACCGTGAGTGCTTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	67264097	67263810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_67263800_67264100
ONT_simulated_read_13793433	chr9	-	2683	4	ISM	ENSMUSG00000019066.14	ENSMUST00000122211.8	3886	5	2222	936	2200	196	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	150	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTGTTGCTAGAAGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	21827213	21819741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21821968_21825940_21826066_21826158_21826278_21827000
ONT_simulated_read_13793621	chr7	-	341	1	ISM	ENSMUSG00000070371.12	ENSMUST00000118755.8	3028	15	13615	132	2340	29	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGGCCTGAAGAGGGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	127532282	127531941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_127531900_127532300
ONT_simulated_read_13798257	chr11	-	1738	1	ISM	ENSMUSG00000078622.9	ENSMUST00000002043.10	5193	13	15328	1871	3412	1500	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTTTTCCTTCAAAAGCAT	NA	NA	NA	NA	NA	NA	NA	NA	106091842	106090104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106090100_106091800
ONT_simulated_read_13800980	chr2	+	973	1	FSM	ENSMUSG00000075391.7	ENSMUST00000120770.2	555	1	0	-418	0	418	mono-exon	FALSE	NA	NA	NA	NA	NA	217	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTTTCCATAATGGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	35230420	35231393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_35230400_35231400
ONT_simulated_read_13804454	chr11	+	1370	11	ISM	ENSMUSG00000005417.18	ENSMUST00000108751.8	4021	24	65174	23326	65107	-23326	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACAGAATGTCCACGTGG	NA	NA	NA	NA	NA	NA	NA	NA	59618506	59643723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_59618530_59622333_59622419_59626769_59626891_59627897_59628055_59631945_59632088_59632816_59632925_59634596_59634654_59635577_59635647_59639372_59639463_59640344_59640455_59643315
ONT_simulated_read_13807835	chr6	-	1825	6	ISM	ENSMUSG00000055799.14	ENSMUST00000069536.12	3042	12	156260	144	155958	-144	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAGCTCCAAGACCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	72609977	72603504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_72604777_72606938_72607015_72607994_72608103_72608197_72608358_72608938_72609080_72609909
ONT_simulated_read_13808260	chr17	-	772	7	ISM	ENSMUSG00000037098.19	ENSMUST00000148021.3	3333	12	13859	1975	13859	-1972	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCACTGGCTGCAGAAATC	NA	NA	NA	NA	NA	NA	NA	NA	26223575	26209990	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_26210091_26210231_26210388_26210636_26210775_26211555_26211638_26213159_26213301_26216902_26217007_26223524
ONT_simulated_read_1380854	chr7	-	1093	9	ISM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	40853	39793	40853	-39793	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGCGTGTGTGGACCATG	NA	NA	NA	NA	NA	NA	NA	NA	80412311	80401123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80401199_80401616_80401778_80401937_80402102_80405927_80406013_80407151_80407316_80407921_80408007_80409505_80409685_80410562_80410677_80412245
ONT_simulated_read_13811051	chr19	+	277	3	ISM	ENSMUSG00000024924.15	ENSMUST00000047645.13	3260	17	21417	9799	21417	-9799	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATCAAATGGATCTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	27216173	27217328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_27216247_27217021_27217142_27217244
ONT_simulated_read_13811307	chr11	+	396	1	ISM	ENSMUSG00000020300.15	ENST00000520867.5	2599	8	324	59009	0	-58956	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGCAAAAGCTGAAGAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	31822225	31822621	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_31822200_31822600
ONT_simulated_read_13812339	chr12	-	646	3	ISM	ENSMUSG00000021120.12	ENSMUST00000072154.9	2339	4	3837	1439	3831	-855	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATCTCTTGAGTTTAAGG	NA	NA	NA	NA	NA	NA	NA	NA	79132588	79128876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_79129271_79130389_79130474_79132420
ONT_simulated_read_13820276	chr15	-	945	1	ISM	ENSMUSG00000023050.10	ENSMUST00000023812.10	5185	14	16710	1536	10574	-157	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGAGTTCCTGCCCAGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	102408561	102407616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_102407600_102408600
ONT_simulated_read_13825322	chr19	+	266	1	ISM	ENSMUSG00000024750.12	ENSMUST00000237651.2	7385	6	0	14297	0	-9747	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGAGCTGCGGCGGGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	21249641	21249907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_21249600_21249900
ONT_simulated_read_13826814	chr7	-	416	4	ISM	ENSMUSG00000030538.16	ENSMUST00000206084.2	772	7	4017	171	4017	-171	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGCTGAGATGTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	79878296	79877077	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145
ONT_simulated_read_13828261	chr6	+	1279	10	ISM	ENSMUSG00000030228.20	ENSMUST00000218528.2	2712	21	35547	71747	35547	-71747	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGACCAGGACAATTCAG	NA	NA	NA	NA	NA	NA	NA	NA	139718167	139841922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_139718230_139789613_139789795_139793287_139793396_139798515_139798609_139800993_139801124_139805090_139805228_139805938_139806109_139821028_139821186_139827691_139827802_139841791
ONT_simulated_read_13828283	chr5	-	775	2	ISM	ENSMUSG00000029270.11	ENST00000616709.4	1656	4	72641	600	72632	-600	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTCGGGAAGAATTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	108062319	108057415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_108058083_108062211
ONT_simulated_read_13829288	chr4	-	1284	11	ISM	ENSMUSG00000028909.18	ENSMUST00000105987.9	5484	30	38520	10618	21748	4153	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAAGGCTTCCACTCCA	NA	NA	NA	NA	NA	NA	NA	NA	131527079	131506385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_131506489_131507173_131507291_131507385_131507484_131508140_131508178_131514618_131514696_131515076_131515153_131515685_131515877_131520828_131520987_131525163_131525303_131526022_131526060_131526828
ONT_simulated_read_13831482	chr5	-	1151	5	FSM	ENSMUSG00000029433.17	ENST00000443649.9	1174	5	23	0	23	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2878	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGGATGGTATCCACCTAA	NA	NA	NA	NA	NA	NA	NA	NA	123662703	123650529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_123650771_123655799_123655897_123656017_123656129_123658103_123658236_123662133
ONT_simulated_read_13833354	chr8	+	1477	10	ISM	ENSMUSG00000031785.17	ENSMUST00000093271.8	3574	14	99	5718	99	-5718	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTCCAGGTAGGCCAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	95711097	95735109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_95711286_95729066_95729142_95729878_95730302_95731841_95731975_95732380_95732529_95732827_95732960_95733449_95733567_95733897_95733944_95734192_95734297_95734998
ONT_simulated_read_13837498	chr11	-	308	1	ISM	ENSMUSG00000020792.16	ENSMUST00000106411.10	3205	18	17484	942	17206	174	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTGCATCTGGCCAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	116180076	116179768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_116179800_116180100
ONT_simulated_read_13839882	chr7	-	810	1	ISM	ENSMUSG00000008318.11	ENSMUST00000008462.11	2851	11	16199	591	16199	-591	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGACAGGCAGGCTAGG	NA	NA	NA	NA	NA	NA	NA	NA	100496454	100495644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_100495600_100496500
ONT_simulated_read_138510	chr11	-	246	1	ISM	ENSMUSG00000050965.15	ENSMUST00000059595.11	8409	17	404279	6017	39990	-1227	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCTGGAAATTCTAGGG	NA	NA	NA	NA	NA	NA	NA	NA	107830475	107830229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_107830200_107830500
ONT_simulated_read_13851583	chr16	-	523	1	ISM	ENSMUSG00000022519.15	ENSMUST00000090500.10	3698	6	39804	2533	39804	-2521	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATCCTGGCAAAGACCAA	NA	NA	NA	NA	NA	NA	NA	NA	4301135	4300612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4300600_4301100
ONT_simulated_read_13853137	chr3	-	492	4	ISM	ENSMUSG00000028107.15	ENST00000369054.6	1537	12	3548	4824	3548	-2293	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTTTCTCCGGTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	95658264	95653457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95653483_95653846_95654010_95654750_95654969_95658178
ONT_simulated_read_13853345	chr9	-	186	2	ISM	ENSMUSG00000003410.9	ENSMUST00000215901.2	3037	6	15632	3745	15619	-3745	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTACGGCCGAATCATCACT	NA	NA	NA	NA	NA	NA	NA	NA	21947687	21937851	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21937958_21947607
ONT_simulated_read_13854803	chr14	-	2400	4	ISM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	14961	431	14940	-431	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	281	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTACAGTGCTGATTTGC	NA	NA	NA	NA	NA	NA	NA	NA	67231365	67223118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325
ONT_simulated_read_1386190	chr9	-	1362	6	ISM	ENSMUSG00000053110.14	ENSMUST00000086580.12	4115	8	30677	2028	30405	127	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCATTCTTCTGTTAGCG	NA	NA	NA	NA	NA	NA	NA	NA	7973912	7934027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_7934734_7936515_7936629_7938408_7938540_7952953_7953136_7962289_7962404_7973796
ONT_simulated_read_1386395	chr17	+	777	4	ISM	ENSMUSG00000039220.17	ENSMUST00000087210.7	4222	19	0	7986	0	-7975	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGACCACCAACAACATTC	NA	NA	NA	NA	NA	NA	NA	NA	36228087	36235187	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_36228609_36234199_36234318_36234928_36235016_36235136
ONT_simulated_read_13864187	chr11	-	278	1	FSM	ENSMUSG00000083022.2	ENSMUST00000117476.2	393	1	0	115	0	-115	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCCTTCACGTCAGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	6123036	6122758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_6122800_6123000
ONT_simulated_read_13865564	chr3	+	1156	12	ISM	ENSMUSG00000045576.17	ENST00000490067.5	1669	14	5947	71	5899	-71	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTACCGCAATGCTAGCG	NA	NA	NA	NA	NA	NA	NA	NA	104778281	104833817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_104778328_104780837_104780893_104782142_104782259_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826666_104826818_104829502_104829596_104833745
ONT_simulated_read_13868649	chr2	-	741	6	ISM	ENSMUSG00000002105.16	ENST00000362021.9	2196	9	23	1859	23	-798	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGATCCCCCATGAGGTAA	NA	NA	NA	NA	NA	NA	NA	NA	90899056	90894016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_90894052_90895059_90895150_90895250_90895353_90895926_90896046_90896357_90896472_90898775
ONT_simulated_read_13875614	chr7	-	1352	1	FSM	ENSMUSG00000074024.6	ENSMUST00000182578.2	3832	1	9	2471	0	598	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTGGCTTGTGGTGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	92390667	92389315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_92389300_92390700
ONT_simulated_read_13876346	chr17	-	2440	2	ISM	ENSMUSG00000090655.3	ENSMUST00000234443.2	5164	7	23461	912	23461	-912	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTGGGGTCAGTGACAC	NA	NA	NA	NA	NA	NA	NA	NA	57829044	57814364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_57816685_57828924
ONT_simulated_read_13879292	chr3	-	663	1	ISM	ENSMUSG00000044864.17	ENSMUST00000120875.8	4945	4	32369	2554	3082	266	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCCACCTGCAAATAGATG	NA	NA	NA	NA	NA	NA	NA	NA	38506624	38505961	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_38506000_38506600
ONT_simulated_read_13883431	chr7	-	533	5	ISM	ENSMUSG00000063550.9	ENSMUST00000211022.2	3132	20	29634	15325	29351	-15325	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACCAGAGTCAGGCCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	101829723	101809859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634
ONT_simulated_read_13883682	chr11	-	1155	7	ISM	ENSMUSG00000040712.17	ENSMUST00000119120.2	4460	22	1804	11804	1780	-11802	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCGAGGCAGAGGGCACT	NA	NA	NA	NA	NA	NA	NA	NA	70576977	70572093	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_70572595_70573286_70573422_70573719_70573874_70574104_70574177_70574715_70574852_70574930_70574999_70576888
ONT_simulated_read_13885574	chr3	-	421	4	ISM	ENSMUSG00000027933.12	ENSMUST00000196530.2	3778	30	32444	4302	32134	-4302	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGCCTCCACGAGGGT	NA	NA	NA	NA	NA	NA	NA	NA	90308476	90303684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_90303839_90307610_90307731_90307901_90307947_90308374
ONT_simulated_read_13887880	chr5	-	1179	4	ISM	ENSMUSG00000029209.16	ENSMUST00000031117.13	1894	7	7183	318	5671	-149	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCATGCTTCTATGCACC	NA	NA	NA	NA	NA	NA	NA	NA	69742500	69732661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_69733297_69735320_69735496_69736850_69737036_69742316
ONT_simulated_read_13889564	chr8	+	211	1	ISM	ENSMUSG00000031628.10	ENSMUST00000211115.2	2601	7	0	22188	0	-20659	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTGTCTGCTGCTCTCG	NA	NA	NA	NA	NA	NA	NA	NA	47070325	47070536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_47070300_47070500
ONT_simulated_read_13890013	chr11	-	1043	1	NIC	ENSMUSG00000042148.9	novel	2915	7	NA	NA	114934	-860	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGGCTGCCCACTGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	63855355	63854312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_63854300_63855400
ONT_simulated_read_13890830	chr1	+	1334	8	ISM	ENSMUSG00000034220.8	ENSMUST00000045970.8	4176	9	324	2819	324	-2819	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCTCAAGATCATGACCAA	NA	NA	NA	NA	NA	NA	NA	NA	92759690	92785682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_92759820_92781068_92781228_92782579_92782969_92783628_92783795_92784708_92784840_92784969_92785090_92785193_92785328_92785576
ONT_simulated_read_13890963	chr4	+	131	1	ISM	ENSMUSG00000028524.22	ENSMUST00000066824.14	4305	24	193	211525	-17	-168594	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGGCAGCTTTGTGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	102617524	102617655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_102617500_102617700
ONT_simulated_read_13895062	chr6	-	1142	9	ISM	ENSMUSG00000030177.15	ENSMUST00000112703.8	1887	12	8952	351	8909	-351	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAAGTGTTTGGGCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	120325481	120302346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348
ONT_simulated_read_13896209	chr10	-	1007	5	ISM	ENSMUSG00000019795.18	ENSMUST00000162606.8	2757	8	19178	1080	18873	-1072	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAGGTGTTTGTAAATA	NA	NA	NA	NA	NA	NA	NA	NA	7520194	7506216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088
ONT_simulated_read_13897039	chr5	-	2279	1	ISM	ENSMUSG00000039959.14	ENSMUST00000060311.12	7835	31	133869	2437	49226	2204	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGGAAGATCCTGAATTTA	NA	NA	NA	NA	NA	NA	NA	NA	135440100	135437821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_135437800_135440100
ONT_simulated_read_13897804	chr18	-	1587	1	ISM	ENSMUSG00000005873.7	ENSMUST00000006027.7	2852	5	26238	660	26215	-660	mono-exon	FALSE	NA	NA	NA	NA	NA	1484	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAATATACAAAATACTTT	NA	NA	NA	NA	NA	NA	NA	NA	34480184	34478597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_34478600_34480200
ONT_simulated_read_13900370	chr1	+	1477	12	ISM	ENSMUSG00000026427.17	ENSMUST00000112446.9	2153	15	0	5878	0	-5878	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTAGAGAAAAATGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	131080917	131094098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063
ONT_simulated_read_13901114	chr14	-	745	1	NIC	ENSMUSG00000041625.16	novel	686	4	NA	NA	21328	-177	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGCATCTCAGAAGTCGA	NA	NA	NA	NA	NA	NA	NA	NA	123129204	123128459	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_123128500_123129200
ONT_simulated_read_13901278	chr15	+	1885	10	FSM	ENSMUSG00000022456.19	ENST00000406029.5	1859	10	-26	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATACATTTAGCAATAAGA	NA	NA	NA	NA	NA	NA	NA	NA	82159439	82178274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_82159688_82167259_82167389_82167877_82167960_82168572_82168711_82169987_82170106_82170637_82170734_82173395_82173496_82174604_82174657_82174938_82175033_82177446
ONT_simulated_read_1390179	chr8	-	329	1	ISM	ENSMUSG00000003809.15	ENSMUST00000003907.14	2167	11	6869	327	6869	-327	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCCACTGAGATGGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	85613677	85613348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85613300_85613700
ONT_simulated_read_13903984	chr11	+	1449	7	ISM	ENSMUSG00000034177.16	ENSMUST00000121782.9	2640	8	0	2961	0	-881	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGACTTTGACCCCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	87555374	87622405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_87555694_87617975_87618051_87618161_87618294_87618851_87618957_87620225_87620388_87620957_87621061_87621852
ONT_simulated_read_13905989	chr16	-	530	6	ISM	ENSMUSG00000061751.17	ENST00000682363.1	2982	15	46037	21286	46037	-21286	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTACGATGCCTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	33870293	33854848	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33870199
ONT_simulated_read_1391313	chr17	+	998	6	ISM	ENSMUSG00000055817.19	ENSMUST00000067826.15	2087	17	82730	0	80511	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGTGTTTATTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	84096349	84122334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_84096472_84099081_84099231_84099970_84100194_84107478_84107566_84111879_84112027_84122064
ONT_simulated_read_13913259	chr9	+	485	7	ISM	ENSMUSG00000032604.17	ENSMUST00000006838.16	2800	24	742	4767	388	-4767	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCCGGGGGGAGGCACTT	NA	NA	NA	NA	NA	NA	NA	NA	108385646	108388373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337
ONT_simulated_read_13913411	chr10	-	157	1	ISM	ENSMUSG00000009647.14	ENSMUST00000020312.13	2872	8	167857	1695	9325	-82	mono-exon	FALSE	NA	NA	NA	NA	NA	318	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAATTCTAAAAACAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	59284657	59284500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_59284500_59284700
ONT_simulated_read_13913759	chr10	+	758	7	ISM	ENSMUSG00000037846.19	ENST00000373789.8	3076	12	25	25261	0	-24451	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAATGCTGGAGACTGCT	NA	NA	NA	NA	NA	NA	NA	NA	67815544	67853677	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_67815643_67823136_67823334_67833394_67833454_67837753_67837808_67839033_67839152_67841329_67841520_67853635
ONT_simulated_read_13914400	chr11	-	362	1	ISM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	6109	129	6092	56	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTATTTTCCTTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	96708730	96708368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_96708400_96708700
ONT_simulated_read_13915840	chr18	-	1408	1	ISM	ENSMUSG00000024477.5	ENSMUST00000236216.2	7477	9	39292	4943	39118	1226	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAGGTCACAGGTAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	46374768	46373360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_46373400_46374800
ONT_simulated_read_1391664	chr5	-	4116	27	FSM	ENSMUSG00000035325.17	ENST00000448323.5	4177	27	66	-5	9	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATACAGTTAGTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	100564025	100509512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
ONT_simulated_read_13917174	chr10	+	1411	11	NIC	ENSMUSG00000019823.18	novel	3242	23	NA	NA	454	-3405	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAACATGAGCTAGGCATC	NA	NA	NA	NA	NA	NA	NA	NA	41354473	41359498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_+_41354632_41354958_41355064_41355394_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436
ONT_simulated_read_13922367	chr2	-	2700	15	ISM	ENSMUSG00000005087.18	ENSMUST00000005218.15	5614	19	48389	2184	48110	683	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGTGTGGCCTTAGTA	NA	NA	NA	NA	NA	NA	NA	NA	102683581	102643669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_102644683_102652552_102652632_102654605_102654678_102658886_102658956_102661674_102661882_102662827_102662918_102664578_102664681_102668157_102668284_102669702_102669823_102672605_102672723_102673180_102673295_102675629_102675756_102676747_102676865_102679001_102679128_102683359
ONT_simulated_read_13924726	chr9	-	1512	1	ISM	ENSMUSG00000032262.14	ENSMUST00000034796.14	3001	6	25448	601	25448	-601	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTCCTTGGTGCTAATGA	NA	NA	NA	NA	NA	NA	NA	NA	83662857	83661345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_83661300_83662900
ONT_simulated_read_13924794	chr11	-	862	7	ISM	ENSMUSG00000034341.18	ENSMUST00000074628.13	1826	8	3059	824	2998	-145	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAACTCCTGGCCTCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	115974762	115970222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101_115973238_115974664
ONT_simulated_read_13927270	chr18	+	704	2	ISM	ENSMUSG00000046668.10	ENSMUST00000060722.8	2302	3	105	2686	105	-2683	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACAGCTGACGCTGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	35962945	35992055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_35963040_35991445
ONT_simulated_read_13930609	chr15	-	738	1	ISM	ENSMUSG00000016664.17	ENSMUST00000171436.8	3693	11	88159	103	56368	-103	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGCTGCTGCTGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	83260648	83259910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_83259900_83260600
ONT_simulated_read_1393585	chr17	-	1416	1	ISM	ENSMUSG00000024083.17	ENSMUST00000172818.8	4740	10	48404	1092	29519	-1077	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGGGCTTCTGTGACT	NA	NA	NA	NA	NA	NA	NA	NA	64590507	64589091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_64589100_64590500
ONT_simulated_read_13940029	chr4	-	752	4	ISM	ENSMUSG00000044813.16	ENSMUST00000061986.12	2244	6	72008	582	72008	-582	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCAGTGTCCAGTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	45458322	45423859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_45424124_45444678_45444799_45447505_45447678_45458126
ONT_simulated_read_1394175	chr10	-	736	1	ISM	ENSMUSG00000015755.17	ENSMUST00000146444.8	4380	7	48685	1157	48685	-923	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATGTATAGTGTAATAGA	NA	NA	NA	NA	NA	NA	NA	NA	7783309	7782573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_7782600_7783300
ONT_simulated_read_13943989	chr16	-	754	1	NIC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	10550	-481	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCACTCAAAAGCCCCGGC	NA	NA	NA	NA	NA	NA	NA	NA	5063250	5062496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_5062500_5063200
ONT_simulated_read_13944455	chr4	+	1434	9	ISM	ENSMUSG00000006386.16	ENST00000406359.8	3812	22	50	46612	0	-46612	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTCTATAAACCTGTCAA	NA	NA	NA	NA	NA	NA	NA	NA	94627754	94716019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_94627930_94669052_94669365_94686847_94686959_94687363_94687517_94692521_94692654_94693049_94693191_94708320_94708473_94715492_94715638_94715906
ONT_simulated_read_1394505	chr1	-	158	2	ISM	ENSMUSG00000025982.14	ENSMUST00000027127.14	6195	25	24275	16339	24275	-16339	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACCAGATTCTTCCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	55042365	55040666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_55040722_55042262
ONT_simulated_read_13948452	chr3	-	1324	5	ISM	ENSMUSG00000014599.11	ENSMUST00000014743.10	4176	9	10019	2042	529	-76	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTCTCCTACCATCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	107657766	107650405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_107650462_107654041_107654101_107654422_107654476_107655469_107656486_107657626
ONT_simulated_read_13949092	chr2	-	694	1	NIC	ENSMUSG00000027199.15	novel	2389	9	NA	NA	15693	-450	mono-exon	FALSE	NA	NA	NA	NA	NA	203	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAATTTGCTTTTAAACA	NA	NA	NA	NA	NA	NA	NA	NA	122426091	122425397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_122425400_122426100
ONT_simulated_read_13949181	chr16	-	732	1	NIC	ENSMUSG00000022639.15	novel	2052	4	NA	NA	5525	-802	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTTTGTTTTTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	50547521	50546789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_50546800_50547500
ONT_simulated_read_13951948	chr8	+	960	5	ISM	ENSMUSG00000038365.9	ENST00000276326.9	1536	8	12036	209	12036	-209	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	221	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATACTCAGCCCCATATT	NA	NA	NA	NA	NA	NA	NA	NA	13976978	13989947	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_13977042_13979255_13979441_13981181_13981365_13985145_13985290_13989562
ONT_simulated_read_13954100	chr7	-	437	1	ISM	ENSMUSG00000040139.15	ENSMUST00000068996.13	1126	4	34433	319	34403	244	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATGTCTTCTGCTGGACA	NA	NA	NA	NA	NA	NA	NA	NA	136978058	136977621	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_136977600_136978100
ONT_simulated_read_13956871	chrX	-	308	1	FSM	ENSMUSG00000083482.2	ENSMUST00000117744.2	255	1	0	-53	0	53	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTACTTTACAATGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	75963716	75963408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_75963400_75963700
ONT_simulated_read_1395818	chr17	-	331	1	ISM	ENSMUSG00000015478.14	ENSMUST00000015622.8	1238	6	2046	223	2046	-223	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAATCCTTTGCTTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	34820618	34820287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_34820300_34820600
ONT_simulated_read_13958344	chr6	-	909	1	ISM	ENSMUSG00000005362.15	ENSMUST00000013882.10	2072	11	18956	0	18956	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCTCCTTAATGTCATT	NA	NA	NA	NA	NA	NA	NA	NA	106758070	106757161	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_106757200_106758100
ONT_simulated_read_13961735	chr4	-	1088	1	ISM	ENSMUSG00000028736.14	ENSMUST00000030508.14	5854	9	92626	2753	92105	861	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGCCACCGGATGCAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	139468213	139467125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_139467100_139468200
ONT_simulated_read_13965355	chr11	-	707	6	ISM	ENSMUSG00000020388.13	ENSMUST00000018755.10	1182	7	5254	274	5172	-254	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAGTGCTTCATGTGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	53954586	53946027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_53946066_53946182_53946301_53946615_53946780_53946968_53947151_53950763_53950843_53954460
ONT_simulated_read_1396656	chr14	-	1198	8	ISM	ENSMUSG00000006288.9	ENSMUST00000006451.8	1842	10	7550	430	7526	-430	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	170	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTTCCCCTGCCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	51015426	51003301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_51003480_51004599_51004745_51009572_51009788_51009930_51010078_51010733_51010791_51012747_51012840_51014718_51014870_51015213
ONT_simulated_read_13968613	chr12	-	732	7	ISM	ENSMUSG00000001729.15	ENSMUST00000001780.10	2690	14	14639	3273	11927	-2421	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGCCGGAGTACCTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	112626071	112623527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_112623631_112623701_112623828_112624100_112624170_112624831_112624898_112624979_112625112_112625562_112625711_112625983
ONT_simulated_read_13969197	chr1	-	2061	1	ISM	ENSMUSG00000037568.13	ENSMUST00000166139.7	3897	8	29040	550	28746	-548	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCAAGCTGACTGCTATT	NA	NA	NA	NA	NA	NA	NA	NA	190682453	190680392	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_190680400_190682500
ONT_simulated_read_13970808	chr16	+	570	6	ISM	ENSMUSG00000022702.17	ENST00000340170.8	3393	21	55740	15630	55740	-15630	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGAACCAGGTTGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	18751762	18773429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_18751813_18753767_18753930_18770406_18770466_18770813_18770920_18772744_18772868_18773359
ONT_simulated_read_13972118	chr12	-	958	1	ISM	ENSMUSG00000020962.15	ENSMUST00000021345.14	6064	9	30180	3610	30180	-184	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTGCGTGTGTGCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	91526603	91525645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_91525600_91526600
ONT_simulated_read_13972728	chr4	-	901	3	ISM	ENSMUSG00000037295.8	ENSMUST00000037828.8	6549	9	18581	4887	18558	-529	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTACCAGCTGCCCATG	NA	NA	NA	NA	NA	NA	NA	NA	134476754	134473751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_134474511_134475592_134475628_134476647
ONT_simulated_read_1397512	chr2	-	925	6	ISM	ENSMUSG00000027215.14	ENSMUST00000111257.8	1003	10	22424	-225	22424	225	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGATAGCTGTGTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	93260600	93249949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475
ONT_simulated_read_13975387	chr19	-	1025	10	ISM	ENSMUSG00000025228.6	ENSMUST00000040270.6	2757	11	8231	1614	8222	-1611	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTCTAAGAAAGAATATGAAG	NA	NA	NA	NA	NA	NA	NA	NA	46375955	46366863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890
ONT_simulated_read_13978662	chr16	+	1460	5	ISM	ENSMUSG00000008976.17	ENSMUST00000114184.8	2202	10	17658	-59	17459	59	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTAGTTTTGACTTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	84649470	84658262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
ONT_simulated_read_13978770	chr15	+	768	5	ISM	ENSMUSG00000015363.14	ENSMUST00000165690.2	1941	10	8585	135	8585	-132	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGCTGGCGCCGCCCGTCT	NA	NA	NA	NA	NA	NA	NA	NA	88968911	88970201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_88969012_88969105_88969246_88969476_88969650_88969728_88969841_88969958
ONT_simulated_read_13979970	chr1	-	306	2	ISM	ENSMUSG00000060743.13	ENSMUST00000081026.11	888	4	3304	327	2581	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTTATCAGTAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	180637808	180630588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_180630768_180637681
ONT_simulated_read_13981077	chr4	-	841	3	ISM	ENSMUSG00000023075.10	ENST00000372984.8	1317	4	10983	163	10983	-73	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	367	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGAATCTGCAAATACGT	NA	NA	NA	NA	NA	NA	NA	NA	123633071	123630024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_123630658_123631801_123631874_123632935
ONT_simulated_read_13983434	chr14	-	1282	8	ISM	ENSMUSG00000021973.10	ENSMUST00000022543.10	2329	12	53836	561	53836	-561	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	216	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGTGATAGCTTAGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	58182883	58154278	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_58154833_58156279_58156438_58156800_58156910_58161396_58161569_58164653_58164752_58169694_58169761_58181044_58181128_58182841
ONT_simulated_read_13984176	chr2	-	310	2	ISM	ENSMUSG00000027641.14	ENSMUST00000029170.8	4862	22	37091	17700	37091	-17700	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATAGGCATTTGGATCA	NA	NA	NA	NA	NA	NA	NA	NA	157009341	157005512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_157005636_157009154
ONT_simulated_read_13984585	chr5	-	1100	8	ISM	ENSMUSG00000029189.11	ENST00000502949.5	3382	23	44714	23902	44714	-23902	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTGGGGACCCTCGCCA	NA	NA	NA	NA	NA	NA	NA	NA	53313100	53289134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_53289220_53293114_53293243_53295127_53295305_53297149_53297213_53301383_53301525_53302776_53302897_53311512_53311693_53312894
ONT_simulated_read_13985131	chr1	+	1513	10	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	36114	10837	36114	-10717	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATACACCAATGGAAGACA	NA	NA	NA	NA	NA	NA	NA	NA	150305114	150314849	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_150305297_150306311_150306456_150306912_150307100_150308161_150308368_150308569_150308632_150309428_150309638_150311393_150311667_150312468_150312618_150313153_150313238_150314832
ONT_simulated_read_13986081	chr1	-	582	1	FSM	ENSMUSG00000103030.2	ENSMUST00000193614.2	1794	1	219	993	219	-993	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCCCAGTGACCTGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	55092052	55091470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_55091500_55092100
ONT_simulated_read_13987972	chr15	+	1480	6	ISM	ENSMUSG00000056851.15	ENST00000455667.7	2547	12	10874	521	10820	-519	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCACCCCAGTTCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	102392588	102407975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_102392676_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
ONT_simulated_read_13992749	chr11	+	1283	5	ISM	ENSMUSG00000020525.18	ENSMUST00000020835.16	2899	6	0	7455	0	-7455	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCGTATGCTTCGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	85202069	85230437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_85202750_85217689_85217919_85223076_85223202_85227890_85228082_85230379
ONT_simulated_read_13993081	chr8	+	224	1	ISM	ENSMUSG00000031770.17	ENSMUST00000161576.8	1952	8	0	8716	0	-8694	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGCTGAGTGGCGACCGC	NA	NA	NA	NA	NA	NA	NA	NA	95113065	95113289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_95113100_95113300
ONT_simulated_read_13995736	chr15	+	745	1	Antisense	novelGene_ENSMUSG00000016664.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	283	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCAAGACAAAAAGAGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	83261187	83261932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr15_+_83261200_83261900
ONT_simulated_read_13995871	chr11	+	765	6	FSM	ENSMUSG00000014245.9	ENST00000395844.8	745	6	-19	-1	0	1	multi-exon	TRUE	canonical	NA	NA	NA	NA	1520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCAGAGCAAGAAGTCGT	NA	NA	NA	NA	NA	NA	NA	NA	62349285	62403866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62402963_62403098_62403729
ONT_simulated_read_13996578	chr19	+	761	6	ISM	ENSMUSG00000024851.15	ENSMUST00000100022.4	4512	23	9305	1951	9305	-1951	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCAGCAGGTATCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	4159926	4162014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4159997_4160494_4160660_4160841_4160991_4161078_4161190_4161581_4161699_4161865
ONT_simulated_read_13996613	chr11	+	1450	9	ISM	ENSMUSG00000000632.14	ENSMUST00000000646.14	3964	16	22841	4552	22841	-4552	internal_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACAGCCCGGGTCCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	77844678	77865314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_77844894_77845575_77845710_77853680_77853877_77859727_77859914_77863673_77863843_77863919_77864087_77864608_77864804_77865016_77865156_77865265
ONT_simulated_read_13999370	chr4	-	2461	4	ISM	ENSMUSG00000038544.15	ENSMUST00000095063.11	3237	5	1541	628	1483	-628	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGTTATGGCACAAGACA	NA	NA	NA	NA	NA	NA	NA	NA	59782325	59770264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_59772460_59773915_59774007_59775446_59775550_59782253
ONT_simulated_read_14004545	chr5	-	414	1	ISM	ENSMUSG00000029128.13	ENSMUST00000201422.4	1697	8	82272	460	82272	-457	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATCATTTTCTATCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	41783192	41782778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_41782800_41783200
ONT_simulated_read_14006134	chr9	+	1114	10	ISM	ENSMUSG00000032322.15	ENST00000379595.7	1675	15	-5	3566	-5	-3566	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAATGCCCTGTGGGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	55997259	56032446	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_55997729_56021513_56021615_56022346_56022422_56027584_56027620_56027830_56027938_56030042_56030106_56030545_56030645_56031031_56031078_56031877_56031958_56032407
ONT_simulated_read_14006934	chr6	-	362	2	ISM	ENSMUSG00000042873.12	ENST00000287585.8	2197	4	18699	1098	18699	-1098	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTCTCATTCCTGCGTT	NA	NA	NA	NA	NA	NA	NA	NA	113153613	113148764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113148920_113153406
ONT_simulated_read_14007119	chr2	-	922	1	ISM	ENSMUSG00000027360.6	ENSMUST00000028838.5	2392	12	23992	98	23932	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGCAGGCGCTTGTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	126436606	126435684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_126435700_126436600
ONT_simulated_read_14007746	chr6	-	235	1	ISM	ENSMUSG00000030035.15	ENST00000393972.7	1325	5	1741	449	1554	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTTCACATACCCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	83096701	83096466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_83096500_83096700
ONT_simulated_read_14008899	chr8	+	828	7	ISM	ENSMUSG00000005481.19	ENSMUST00000019576.15	1656	11	95	1093	0	-1093	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAAGCTCACACTGCATG	NA	NA	NA	NA	NA	NA	NA	NA	84441900	84448884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858
ONT_simulated_read_14009196	chr15	-	1643	8	ISM	ENSMUSG00000037458.16	ENST00000347770.8	2856	13	20452	172	20422	-172	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	188	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAGGCTAAAACTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	38499085	38490032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912
ONT_simulated_read_14009933	chr10	-	2606	13	ISM	ENSMUSG00000038446.9	ENSMUST00000044166.9	3534	15	25640	411	25640	-411	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAAATTTCTTTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	40733667	40708027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037_40719140_40720956_40721003_40723125_40723201_40723919_40724060_40725740_40725838_40726925_40727066_40728492_40728577_40733542
ONT_simulated_read_14011051	chr1	-	2347	1	ISM	ENSMUSG00000026064.17	ENSMUST00000232841.2	4236	6	5986	675	5986	-675	mono-exon	FALSE	NA	NA	NA	NA	NA	362	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAGCCTGGTCTACATGAA	NA	NA	NA	NA	NA	NA	NA	NA	30982404	30980057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_30980100_30982400
ONT_simulated_read_1401138	chr10	+	556	6	ISM	ENSMUSG00000053219.16	ENSMUST00000181645.8	1579	9	17	3254	17	-3251	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGACCTTCCCTGGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	22034484	22056562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_22034618_22047902_22048001_22049079_22049150_22049774_22049866_22050191_22050310_22056516
ONT_simulated_read_14011403	chr15	-	799	1	ISM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	21329	1281	21276	-1279	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGCTTCCTGTGTTCTCA	NA	NA	NA	NA	NA	NA	NA	NA	83012256	83011457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_83011500_83012300
ONT_simulated_read_14012301	chr4	-	2899	1	ISM	ENSMUSG00000028619.16	ENSMUST00000057043.10	6431	5	39122	2372	38857	-2372	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCCCCCTCCCTCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	106996622	106993723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_106993700_106996600
ONT_simulated_read_14013398	chr1	-	997	3	ISM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	30354	2788	30354	-2788	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACGCATTCCTTTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	13700416	13696341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_13697129_13697579_13697662_13700288
ONT_simulated_read_14013463	chr18	-	210	2	ISM	ENSMUSG00000042211.8	ENST00000513826.1	3483	20	21089	14514	21089	-14421	internal_fragment	FALSE	canonical	NA	NA	NA	NA	408	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACTGGTAGCCGAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	62652998	62651646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_62651683_62652824
ONT_simulated_read_14017495	chr8	+	1236	3	ISM	ENSMUSG00000054823.18	ENSMUST00000143445.2	2416	6	0	15090	0	-15090	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGTGAGTGGCTTGTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	26092334	26138525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_26092753_26130592_26131342_26138456
ONT_simulated_read_14019551	chr11	+	2226	5	NIC	ENSMUSG00000020455.17	novel	2251	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTCTCTGCTTATCCT	NA	NA	NA	NA	NA	NA	NA	NA	58868941	58882281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_58869471_58872066_58872163_58872818_58873050_58879654_58879756_58881012
ONT_simulated_read_14028984	chr14	-	697	1	ISM	ENSMUSG00000037526.8	ENSMUST00000226299.2	3729	11	27542	1518	25327	-1517	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAACCAAATTCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	47780564	47779867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_47779900_47780600
ONT_simulated_read_14029183	chr1	-	1642	1	NIC	ENSMUSG00000026112.8	novel	3863	3	NA	NA	9475	-1903	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGAACTCCAAGGTCGTA	NA	NA	NA	NA	NA	NA	NA	NA	37459709	37458067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_37458100_37459700
ONT_simulated_read_14030203	chr8	-	643	1	ISM	ENSMUSG00000003814.9	ENSMUST00000003912.7	2184	9	4113	329	4043	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	780	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGGGCAGCCAGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	85569450	85568807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85568800_85569400
ONT_simulated_read_1403381	chr12	-	413	5	ISM	ENSMUSG00000020993.10	ENSMUST00000021380.10	1255	6	9752	537	9531	-182	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCAGAGCGTTGCACAT	NA	NA	NA	NA	NA	NA	NA	NA	59098495	59090414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_59090463_59091038_59091133_59094908_59094993_59097053_59097172_59098426
ONT_simulated_read_14034538	chr11	-	891	4	ISM	ENSMUSG00000015837.16	ENSMUST00000102774.11	2037	8	4727	400	4665	59	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1233	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCCTCTGCAGGGAACT	NA	NA	NA	NA	NA	NA	NA	NA	50096927	50091378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_50091775_50093225_50093422_50093640_50093862_50096849
ONT_simulated_read_14034859	chr4	-	1154	1	ISM	ENSMUSG00000029027.10	ENSMUST00000030893.3	2093	7	9524	0	9524	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATGTCAAAATTTTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	154050059	154048905	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_154048900_154050100
ONT_simulated_read_14038900	chr11	-	436	2	ISM	ENSMUSG00000020899.17	ENSMUST00000021282.12	6373	28	19794	2441	19794	-2441	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGTATCTGTTCCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	68879492	68878963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_68879100_68879192
ONT_simulated_read_14039758	chr2	-	482	2	ISM	ENSMUSG00000027122.16	ENSMUST00000093883.4	1363	5	4768	162	4768	-162	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCCTAGACAAAGTTATGG	NA	NA	NA	NA	NA	NA	NA	NA	106795968	106794935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_106795216_106795766
ONT_simulated_read_14042641	chr5	-	2016	12	ISM	ENSMUSG00000029207.17	ENSMUST00000160870.8	6526	17	218397	3243	218379	-83	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATCTACAGCTATTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	66557627	66459313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66549615_66549679_66557418
ONT_simulated_read_14044816	chr10	+	530	3	FSM	ENSMUSG00000019929.17	ENST00000441303.6	504	3	-26	0	7	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	311	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCAGACGGCCTAATTCT	NA	NA	NA	NA	NA	NA	NA	NA	97319198	97353517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_97319421_97330863_97330977_97353322
ONT_simulated_read_14046954	chr3	-	2889	1	ISM	ENSMUSG00000027506.16	ENSMUST00000120143.8	6317	6	73568	2674	32891	359	mono-exon	FALSE	NA	NA	NA	NA	NA	223	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCATGTGGGAACTGAAC	NA	NA	NA	NA	NA	NA	NA	NA	8996215	8993326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_8993300_8996200
ONT_simulated_read_14046992	chr3	-	2026	16	NIC	ENSMUSG00000028041.18	novel	2975	23	NA	NA	2855	-27	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACCTCTGGAGATTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	89254372	89247221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_89247261_89247361_89247487_89248169_89248245_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183
ONT_simulated_read_14051107	chr8	-	1776	8	ISM	ENSMUSG00000058056.17	ENSMUST00000121493.9	5445	20	75011	11529	75011	-7941	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCAGACCTCACTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	62138112	61975995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_61976051_61978101_61978197_61984945_61985096_61986387_61986610_61988719_61988819_61991721_61991858_62002604_62003280_62137768
ONT_simulated_read_14052574	chr16	-	3553	5	ISM	ENSMUSG00000034473.15	ENSMUST00000043521.5	3992	7	14924	145	12767	-145	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTGTGTGTATGCATG	NA	NA	NA	NA	NA	NA	NA	NA	35169364	35131645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_35134658_35139173_35139240_35149867_35149984_35167968_35168164_35169200
ONT_simulated_read_14055724	chr2	-	907	1	NIC	ENSMUSG00000040272.15	novel	3950	15	NA	NA	13850	515	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGAATGTCTGGTTGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	93666174	93665267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_93665300_93666200
ONT_simulated_read_14059707	chr9	+	478	2	NIC	ENSMUSG00000095186.2	novel	681	5	NA	NA	0	-727	intron_retention	TRUE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCATGATTTTCAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	3023546	3024491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_3023945_3024411
ONT_simulated_read_14061372	chr12	-	644	1	ISM	ENSMUSG00000047446.19	ENSMUST00000146905.2	3710	2	627	2868	627	-337	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAGAGATGAATGGC	NA	NA	NA	NA	NA	NA	NA	NA	40086801	40086157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_40086200_40086800
ONT_simulated_read_1406449	chr8	+	390	4	ISM	ENSMUSG00000004565.16	ENSMUST00000207941.2	4263	31	6928	13209	6928	-13209	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCAGGGGAGCTGGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	3573801	3581051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_3573868_3574010_3574167_3574251_3574330_3580961
ONT_simulated_read_1406481	chr15	-	2282	10	ISM	ENSMUSG00000023022.15	ENSMUST00000073691.5	4243	11	31647	1823	-23666	-1823	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCATGGTTCTGGCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	99741690	99678173	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374_99717840_99724672_99724719_99741555
ONT_simulated_read_1406555	chr13	+	1362	7	ISM	ENSMUSG00000049985.16	ENST00000504958.6	2188	10	29541	15704	0	12115	internal_fragment	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAGCTCTCTGGGCCACC	NA	NA	NA	NA	NA	NA	NA	NA	112454987	112504830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_112455082_112459585_112459717_112463662_112463773_112472748_112472810_112492439_112492625_112499948_112500117_112504217
ONT_simulated_read_14066120	chr5	-	245	1	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	1803	-4592	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACTGTGCGTGGCATTGT	NA	NA	NA	NA	NA	NA	NA	NA	138167706	138167461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_138167500_138167700
ONT_simulated_read_14068306	chr9	+	569	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	0	-79	0	79	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCGCAATGTCCTGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	96777710	96778279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_96777700_96778300
ONT_simulated_read_140688	chr1	-	445	2	ISM	ENSMUSG00000026471.15	ENST00000282990.10	628	3	17	6009	17	-6009	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGGCTGGAAGAAGAATGC	NA	NA	NA	NA	NA	NA	NA	NA	155013503	155012395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_155012597_155013259
ONT_simulated_read_14068896	chr1	-	1226	6	ISM	ENSMUSG00000041879.14	ENSMUST00000041023.14	6247	24	41905	2460	41905	-2460	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGACACAGCCCCTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	135316332	135312509	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248
ONT_simulated_read_14070278	chr11	-	140	1	ISM	ENSMUSG00000018585.10	ENSMUST00000108857.2	541	4	14459	0	14459	0	mono-exon	FALSE	NA	NA	NA	NA	NA	586	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGTCTGGTGTATGTT	NA	NA	NA	NA	NA	NA	NA	NA	55337606	55337466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_55337500_55337600
ONT_simulated_read_14070288	chr19	-	769	3	ISM	ENSMUSG00000035783.10	ENSMUST00000039631.10	2035	9	10486	327	10486	-327	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5098	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAGAAAAGTATATTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	34222504	34218816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_34219211_34220716_34220899_34222311
ONT_simulated_read_14071984	chr9	-	1885	1	ISM	ENSMUSG00000050503.10	ENSMUST00000056890.10	4035	2	2608	1742	2608	-1742	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTGGGAAAAGCTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	66419283	66417398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_66417400_66419300
ONT_simulated_read_140726	chr15	-	460	2	ISM	ENSMUSG00000036698.12	ENST00000519980.5	3014	18	77454	346	77454	-346	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCGTCCCAGATGTCAGAC	NA	NA	NA	NA	NA	NA	NA	NA	72979214	72978606	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_72978866_72979013
ONT_simulated_read_14073621	chr6	+	265	2	ISM	ENSMUSG00000034245.11	ENST00000402259.5	541	3	-4	985	-4	-64	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAACGCTGGCACGGACGT	NA	NA	NA	NA	NA	NA	NA	NA	91134378	91149262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_91134528_91149146
ONT_simulated_read_14077180	chr19	-	1159	1	ISM	ENSMUSG00000024782.8	ENSMUST00000025696.5	2809	5	25015	955	24957	-955	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGTGCTACCACTTCC	NA	NA	NA	NA	NA	NA	NA	NA	29000346	28999187	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_28999200_29000300
ONT_simulated_read_14077484	chr4	-	287	3	ISM	ENSMUSG00000035495.16	ENSMUST00000107770.2	2700	10	9102	8366	9102	-8366	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGATCGTGCCTATGGG	NA	NA	NA	NA	NA	NA	NA	NA	46129336	46124097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_46124149_46124899_46125026_46129226
ONT_simulated_read_14077526	chr7	-	730	6	ISM	ENSMUSG00000008435.16	ENSMUST00000008579.14	3034	7	1329	2100	1329	-2100	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCGGCCCAGCCCAGCACA	NA	NA	NA	NA	NA	NA	NA	NA	4447319	4430765	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4447201
ONT_simulated_read_14080113	chrX	-	808	7	NIC	ENSMUSG00000031388.15	novel	797	8	NA	NA	457	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACAATAAATGTCACCCAG	NA	NA	NA	NA	NA	NA	NA	NA	72964977	72960525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_72960889_72961448_72961534_72963107_72963147_72963359_72963476_72963568_72963615_72964588_72964648_72964877
ONT_simulated_read_14081155	chr6	-	1964	16	ISM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	2053	136	1966	-136	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGCAATGCCACAGAGACC	NA	NA	NA	NA	NA	NA	NA	NA	97180555	97161103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434
ONT_simulated_read_14088265	chr3	+	273	2	ISM	ENSMUSG00000045328.12	ENSMUST00000062893.12	7910	46	47508	11958	47508	-11958	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTGTGCATCTCCATCC	NA	NA	NA	NA	NA	NA	NA	NA	134965805	134967414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_134965944_134967279
ONT_simulated_read_14088790	chr8	-	584	1	ISM	ENSMUSG00000015994.11	ENSMUST00000016138.11	1930	9	16107	238	16031	-238	mono-exon	FALSE	NA	NA	NA	NA	NA	307	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTTTGATGTTTAACAGT	NA	NA	NA	NA	NA	NA	NA	NA	26489571	26488987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26489000_26489600
ONT_simulated_read_14092293	chr3	+	825	6	ISM	ENSMUSG00000028013.17	ENSMUST00000122334.8	1368	12	37954	0	11	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATTATATTCATAACTTC	NA	NA	NA	NA	NA	NA	NA	NA	133053836	133083996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_133053952_133073583_133073712_133076140_133076227_133079383_133079454_133082309_133082350_133083610
ONT_simulated_read_14092700	chr4	-	202	2	ISM	ENSMUSG00000029060.18	ENSMUST00000103176.10	3642	19	2089	6587	2089	-6516	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGAGGGCGGTGTGGGCAC	NA	NA	NA	NA	NA	NA	NA	NA	155751566	155745725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_155745832_155751470
ONT_simulated_read_14095399	chr14	-	172	1	ISM	ENSMUSG00000021831.10	ENSMUST00000022378.9	4418	16	32519	2795	32445	-679	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACATTTTTAAAAATTGT	NA	NA	NA	NA	NA	NA	NA	NA	45523510	45523338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_45523300_45523500
ONT_simulated_read_14096180	chr17	+	911	9	ISM	ENSMUSG00000024188.17	ENST00000629543.2	1397	11	-25	2605	-25	-1355	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTTCAAGATCTATCACA	NA	NA	NA	NA	NA	NA	NA	NA	26471972	26498338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306
ONT_simulated_read_14101645	chr14	-	744	1	ISM	ENSMUSG00000087639.2	ENSMUST00000137359.2	2257	2	2717	732	2717	-732	mono-exon	FALSE	NA	NA	NA	NA	NA	1744	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCACTCTACTGTGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	33089383	33088639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_33088600_33089400
ONT_simulated_read_14105601	chr2	-	1537	14	ISM	ENSMUSG00000027376.16	ENST00000317668.8	2651	23	899	4080	823	-4080	internal_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCTAGACCTGTTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	127382482	127374754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_127374804_127376744_127376830_127376966_127377059_127377464_127377589_127378462_127378616_127378875_127379036_127379249_127379314_127380177_127380253_127380581_127380788_127381102_127381193_127381442_127381507_127381696_127381818_127381915_127382119_127382431
ONT_simulated_read_14107458	chr13	+	1681	15	ISM	ENSMUSG00000021595.19	ENSMUST00000109699.11	2834	19	33	3668	0	-3380	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTTAACCCGAACCACAG	NA	NA	NA	NA	NA	NA	NA	NA	69760167	69778785	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_69760308_69760419_69760578_69761056_69761162_69763530_69763637_69765524_69765597_69766224_69766310_69767564_69767758_69769723_69769799_69771281_69771413_69774596_69774671_69775154_69775286_69775678_69775776_69777653_69777836_69778120_69778214_69778746
ONT_simulated_read_1411027	chr17	-	2343	1	ISM	ENSMUSG00000045817.9	ENSMUST00000060366.7	3530	2	808	866	808	-866	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTTCTTTTCACAGTAA	NA	NA	NA	NA	NA	NA	NA	NA	84494567	84492224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_84492200_84494600
ONT_simulated_read_14118690	chr15	-	437	2	ISM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	9339	0	9339	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	831	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGAGCTTGATAGAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	31592611	31590945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_31591202_31592430
ONT_simulated_read_14119202	chr14	+	2048	1	ISM	ENSMUSG00000021962.10	ENSMUST00000022535.9	5576	10	44095	1309	44033	-1309	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTTGTAGTTAACATTAT	NA	NA	NA	NA	NA	NA	NA	NA	30245663	30247711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_30245700_30247700
ONT_simulated_read_1412085	chr19	+	457	5	FSM	ENSMUSG00000024818.16	ENST00000526432.5	684	5	1	226	1	-226	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGATCACAGCCACTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	5928683	5934796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5928720_5929876_5929921_5930112_5930185_5934372_5934632_5934750
ONT_simulated_read_1412164	chr7	-	681	6	ISM	ENSMUSG00000010755.18	ENSMUST00000010899.14	3222	23	7433	27510	-6143	-10220	internal_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATCCAGAACTCTGTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	143146394	143138476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148
ONT_simulated_read_1412282	chr6	-	960	1	ISM	ENSMUSG00000030084.12	ENSMUST00000163139.8	9034	32	43589	1758	38686	943	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTAGCGTTTAGTCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	89296013	89295053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_89295100_89296000
ONT_simulated_read_14123631	chr5	+	2285	7	ISM	ENSMUSG00000031558.16	ENSMUST00000174313.8	7734	37	298624	332	298621	-332	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTATTTTGTTATCTCGGG	NA	NA	NA	NA	NA	NA	NA	NA	48439119	48462521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_48439197_48439286_48439528_48440729_48440861_48453750_48453906_48459607_48459897_48460094_48460307_48461341
ONT_simulated_read_14124109	chr4	-	1330	4	ISM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	46691	2356	46691	-2356	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	181	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTCTCTTCGTGGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	134953434	134943635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334
ONT_simulated_read_1412498	chr12	-	1072	3	ISM	ENSMUSG00000020652.18	ENSMUST00000020981.12	2037	6	17237	459	17237	-459	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGTTGGAAATCTACAC	NA	NA	NA	NA	NA	NA	NA	NA	4266728	4263940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_4264631_4265258_4265431_4266518
ONT_simulated_read_14126928	chr4	+	249	1	FSM	ENSMUSG00000085627.3	ENSMUST00000119005.2	738	1	0	489	0	-489	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACATTCCTTGGCCTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	69772183	69772432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_69772200_69772400
ONT_simulated_read_14126933	chr6	+	799	5	ISM	ENSMUSG00000030341.18	ENSMUST00000032491.15	2156	10	0	4405	0	-4405	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGCCATGCAGGGTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	125326685	125335042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_125327026_125333787_125333942_125334275_125334405_125334683_125334834_125335016
ONT_simulated_read_1412836	chr9	-	664	5	ISM	ENSMUSG00000031922.13	ENSMUST00000124883.8	1643	9	5166	563	5166	-563	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCCCAAGGACCGCAAGT	NA	NA	NA	NA	NA	NA	NA	NA	13724816	13720042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705
ONT_simulated_read_14131678	chr7	+	2199	18	ISM	ENSMUSG00000030835.7	ENST00000677260.1	3923	30	-38	17720	0	-17387	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTTACAGGGCCCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	45683121	45715758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_45683397_45686982_45687073_45687966_45688013_45690892_45690994_45691955_45692063_45693654_45693728_45694684_45694838_45696332_45696423_45699693_45699800_45699969_45700121_45703925_45704101_45706018_45706161_45706500_45706633_45707839_45707977_45710302_45710391_45711192_45711257_45712390_45712487_45715585
ONT_simulated_read_14132075	chrX	-	459	5	ISM	ENSMUSG00000067377.13	ENSMUST00000087557.12	1765	8	1671	1634	1671	-1634	internal_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATCACTACACACGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	132797507	132793450	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_132793516_132795247_132795332_132795676_132795812_132796183_132796283_132797431
ONT_simulated_read_14133187	chr2	+	995	6	ISM	ENSMUSG00000039678.13	ENSMUST00000044556.12	3595	12	8533	2056	8533	-2056	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTCAGCCCTGCCACAC	NA	NA	NA	NA	NA	NA	NA	NA	30032290	30039969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711
ONT_simulated_read_14136264	chr17	-	406	4	ISM	ENSMUSG00000052146.17	ENSMUST00000178774.3	498	5	221	-47	221	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGTATGTTCTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	27853228	27849391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045
ONT_simulated_read_14136343	chr9	-	1937	1	ISM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	59529	485	59466	-485	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAGAATACATAAAATACA	NA	NA	NA	NA	NA	NA	NA	NA	75407410	75405473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_75405500_75407400
ONT_simulated_read_14137557	chr15	+	958	5	ISM	ENSMUSG00000023010.16	ENSMUST00000159531.3	939	10	12264	-480	12264	456	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGGCAAGGTGGAGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	99303754	99306971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ONT_simulated_read_1414	chr17	+	775	5	ISM	ENSMUSG00000036552.20	ENSMUST00000226599.2	788	6	614	0	0	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTCCCTCTGAATGGAC	NA	NA	NA	NA	NA	NA	NA	NA	15262509	15266171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15265897
ONT_simulated_read_14140396	chr6	+	457	1	ISM	ENSMUSG00000015053.15	ENSMUST00000015197.9	3571	6	0	8240	0	-7559	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGCGCTGTCGCTGGGCCCG	NA	NA	NA	NA	NA	NA	NA	NA	88175315	88175772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_88175300_88175800
ONT_simulated_read_14141053	chrX	-	1188	5	ISM	ENSMUSG00000057421.13	ENSMUST00000079987.13	2530	13	9874	249	9874	-249	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGGCCTTCTCTGGAACC	NA	NA	NA	NA	NA	NA	NA	NA	94990645	94979189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472
ONT_simulated_read_14142857	chr6	-	358	1	ISM	ENSMUSG00000033152.14	ENSMUST00000038409.12	1994	8	24089	7034	24089	-7020	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTTGTCAGTGCCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	88826938	88826580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_88826600_88826900
ONT_simulated_read_14143061	chr17	-	338	4	ISM	ENSMUSG00000015478.14	ENSMUST00000015622.8	1238	6	1492	525	1492	-525	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTTCCTCGCCATCTTT	NA	NA	NA	NA	NA	NA	NA	NA	34821172	34820589	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_34820641_34820714_34820833_34820907_34820963_34821058
ONT_simulated_read_14144141	chr15	-	979	7	ISM	ENSMUSG00000022621.17	ENSMUST00000023294.15	1640	9	3706	403	2168	-399	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGTCAACAATATTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	89472420	89467138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_89467634_89467801_89467886_89468112_89468211_89468481_89468594_89470461_89470542_89471116_89471197_89472390
ONT_simulated_read_14145655	chr7	-	933	1	ISM	ENSMUSG00000046792.9	ENSMUST00000094870.3	1897	3	22831	717	17908	-717	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGCGGACAGAGTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	6136139	6135206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_6135200_6136100
ONT_simulated_read_14148258	chr7	-	2127	12	ISM	ENSMUSG00000030583.17	ENSMUST00000183096.8	7713	23	138690	1813	1048	-69	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCAAGTTCGCAGAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	29066195	29021615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_29021713_29023594_29023677_29025187_29025324_29028409_29028554_29030722_29030970_29031649_29031816_29038380_29038603_29047696_29048125_29050117_29050237_29053479_29053608_29063595_29063734_29065975
ONT_simulated_read_14149912	chr9	+	446	1	NIC	ENSMUSG00000096385.8	novel	684	5	NA	NA	0	-1403	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTTTCACGTTGTCAAG	NA	NA	NA	NA	NA	NA	NA	NA	3003345	3003791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_3003300_3003800
ONT_simulated_read_14151712	chr19	+	539	2	ISM	ENSMUSG00000047368.5	ENSMUST00000052556.5	2259	4	0	6815	0	-6587	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATGGTTTTTACCCTTAT	NA	NA	NA	NA	NA	NA	NA	NA	21630888	21656186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_21630958_21655716
ONT_simulated_read_14151758	chr5	-	660	1	NIC	ENSMUSG00000045102.13	novel	2814	25	NA	NA	1006	-160322	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGTGAAAGAACAAATCCA	NA	NA	NA	NA	NA	NA	NA	NA	34325764	34325104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_34325100_34325800
ONT_simulated_read_14153280	chr10	+	1049	5	FSM	ENSMUSG00000035242.16	ENST00000602676.6	953	5	1	-97	1	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	80662515	80665124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664631_80664704
ONT_simulated_read_14153301	chr8	+	1383	7	ISM	ENSMUSG00000031485.16	ENSMUST00000033875.10	3603	8	2474	2060	2431	-495	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATCCCCAGGACACACTG	NA	NA	NA	NA	NA	NA	NA	NA	27535056	27544100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313
ONT_simulated_read_14155284	chr18	-	593	5	ISM	ENSMUSG00000062526.5	ENST00000309976.13	1244	7	7850	263	7850	-263	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	116	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGTGTATGGTGATACG	NA	NA	NA	NA	NA	NA	NA	NA	67362819	67358761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_67358956_67359853_67359995_67361083_67361193_67362000_67362076_67362745
ONT_simulated_read_14156153	chr17	-	825	1	ISM	ENSMUSG00000037098.19	ENSMUST00000118828.8	3271	12	30976	1024	27576	-1015	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTTCATGCTGCCTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	26209858	26209033	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_26209000_26209900
ONT_simulated_read_14157265	chrX	-	499	1	NIC	ENSMUSG00000092463.2	novel	1350	12	NA	NA	3999	-3121	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCATAAGAGTTGGGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	100308630	100308131	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_100308100_100308600
ONT_simulated_read_141582	chr18	+	1079	11	NNC	ENSMUSG00000024474.8	novel	1996	20	NA	NA	6744	0	at_least_one_novel_splicesite	FALSE	non_canonical	NA	NA	NA	NA	179	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTGTTGGGCATTCC	NA	NA	NA	NA	NA	NA	NA	NA	36885407	36890692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr18_+_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
ONT_simulated_read_14160211	chr7	-	689	6	ISM	ENSMUSG00000007783.11	ENST00000405931.6	2285	18	11591	32	11591	-32	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGACAGCATTTCAAGCGC	NA	NA	NA	NA	NA	NA	NA	NA	44611702	44609035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44609100_44609267_44609361_44609473_44609588_44610181_44610335_44610942_44611075_44611569
ONT_simulated_read_14160902	chr15	-	182	2	ISM	ENSMUSG00000022432.8	ENSMUST00000023068.8	4047	25	61067	5044	61064	-3514	internal_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAGGCAAACGGTTCATG	NA	NA	NA	NA	NA	NA	NA	NA	84955098	84953933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_84953998_84954980
ONT_simulated_read_14161759	chr8	-	636	6	ISM	ENSMUSG00000039067.6	ENST00000567958.5	651	7	-53	1287	6	-1287	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTCTGCGGAGCCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	108315090	108309013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
ONT_simulated_read_14163113	chr6	-	822	1	ISM	ENSMUSG00000015112.16	ENSMUST00000015256.15	3067	18	174786	293	138783	-290	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAAGAAACACAATTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	6042332	6041510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_6041500_6042300
ONT_simulated_read_14164167	chr8	+	673	1	FSM	ENSMUSG00000100691.2	ENSMUST00000191396.2	1009	1	0	336	0	-336	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAGCATGCTCACTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	71229458	71230131	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71229500_71230100
ONT_simulated_read_14165840	chr5	-	557	1	ISM	ENSMUSG00000106951.2	ENSMUST00000145042.2	3994	2	1281	3330	1281	-3330	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTATTGAGGGAATGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	148930752	148930195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_148930200_148930800
ONT_simulated_read_14170649	chr7	-	1037	1	ISM	ENSMUSG00000048921.12	ENSMUST00000053392.11	3621	3	4038	1948	3873	-329	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTGAGTGTGGCCGGT	NA	NA	NA	NA	NA	NA	NA	NA	127044292	127043255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_127043300_127044300
ONT_simulated_read_14171884	chr12	-	3059	14	ISM	ENSMUSG00000035247.17	ENSMUST00000042052.9	8988	43	70133	140	70133	-140	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGCAAGGCACACTCACAG	NA	NA	NA	NA	NA	NA	NA	NA	51806186	51790644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_51791442_51791548_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795795_51797103_51797242_51798638_51798841_51800523_51800652_51800825_51800912_51800997_51801206_51801703_51801887_51803829_51803885_51806001
ONT_simulated_read_14175515	chr19	-	736	3	ISM	ENSMUSG00000039652.17	ENSMUST00000154376.8	5671	11	121699	2760	120623	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTGACTCACACCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	37031764	37002038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_37002488_37021921_37022104_37031659
ONT_simulated_read_14179847	chr2	-	1425	1	ISM	ENSMUSG00000043102.3	ENSMUST00000057407.3	2927	2	1662	1328	1662	-1328	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCCCCTTAATTGGCAA	NA	NA	NA	NA	NA	NA	NA	NA	31698930	31697505	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_31697500_31698900
ONT_simulated_read_14180170	chr13	-	1183	5	ISM	ENSMUSG00000006191.18	ENSMUST00000006353.14	2629	16	380965	238	380954	-238	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACCTATTTTGAGAACT	NA	NA	NA	NA	NA	NA	NA	NA	29658692	29509521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_29510212_29538612_29538778_29541482_29541567_29627990_29628054_29658511
ONT_simulated_read_14185066	chr5	+	247	1	ISM	ENSMUSG00000052139.19	ENSMUST00000201352.4	1888	12	66	386966	66	-386743	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCGGTGCGTCGGTCGGGG	NA	NA	NA	NA	NA	NA	NA	NA	31855093	31855340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31855100_31855300
ONT_simulated_read_14185944	chr7	+	1169	7	ISM	ENSMUSG00000003273.15	ENSMUST00000003360.10	1585	9	0	1125	0	-1125	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGACTGTCACCTGGATC	NA	NA	NA	NA	NA	NA	NA	NA	45349266	45352981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_45349764_45349849_45349925_45350647_45350791_45351857_45352044_45352256_45352353_45352485_45352559_45352882
ONT_simulated_read_14186133	chr16	-	334	3	ISM	ENSMUSG00000025613.14	ENSMUST00000175977.8	1470	14	10073	0	10073	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	437	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACTTGTCATAGGTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	87282603	87280875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_87280954_87281691_87281812_87282467
ONT_simulated_read_14186614	chr9	-	1356	1	ISM	ENSMUSG00000061536.14	ENSMUST00000078547.12	5713	8	20150	3409	20150	-420	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACCCTGTTTTGGTAGT	NA	NA	NA	NA	NA	NA	NA	NA	121513875	121512519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_121512500_121513900
ONT_simulated_read_14187913	chr16	-	202	2	ISM	ENSMUSG00000013539.15	ENST00000401886.5	692	6	11696	2328	11696	-2328	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGCAGAGCGAAGCACTC	NA	NA	NA	NA	NA	NA	NA	NA	18130623	18121619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_18121701_18130502
ONT_simulated_read_14190036	chr9	-	997	4	ISM	ENSMUSG00000031922.13	ENSMUST00000147115.8	2262	10	13435	511	5166	-152	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTATATATGTAAATTGGG	NA	NA	NA	NA	NA	NA	NA	NA	13724816	13719631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_13720137_13721155_13721301_13721922_13722159_13724705
ONT_simulated_read_1419088	chr12	-	846	1	FSM	ENSMUSG00000091498.5	ENSMUST00000181662.2	330	1	0	-516	0	516	mono-exon	FALSE	NA	NA	NA	NA	NA	690	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGGAATCCAAGGGAATT	NA	NA	NA	NA	NA	NA	NA	NA	110825328	110824482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_110824500_110825300
ONT_simulated_read_14191560	chr8	+	536	3	ISM	ENSMUSG00000031862.12	ENSMUST00000034326.7	3915	26	108	13745	108	-13745	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTCCTTCCGGTGGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	70243920	70246654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70244292_70246398_70246489_70246579
ONT_simulated_read_14195863	chr7	-	257	1	NIC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	6062	126	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCCAGCTTGGGTTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	117708417	117708160	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_117708200_117708400
ONT_simulated_read_1419642	chr4	+	528	7	ISM	ENSMUSG00000028863.14	ENST00000373075.6	1221	8	1026	545	1011	-527	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAATGTCCCTTGCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	124979980	125003155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125001309_125001340_125002115_125002150_125003091
ONT_simulated_read_14197617	chr10	+	567	6	ISM	ENSMUSG00000033105.13	ENSMUST00000048678.7	4667	22	15155	3115	15155	-3115	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAAGCAGTTACCCAATG	NA	NA	NA	NA	NA	NA	NA	NA	76382595	76388198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_76382694_76383268_76383375_76385053_76385120_76385636_76385718_76386418_76386590_76388153
ONT_simulated_read_14200178	chr6	-	1100	9	ISM	ENSMUSG00000041540.17	ENST00000537393.5	2687	15	186184	2526	-76124	-2240	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAGAAGTACCCGGACTA	NA	NA	NA	NA	NA	NA	NA	NA	143968956	143781061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_143781139_143786899_143787074_143790461_143790571_143807109_143807256_143819698_143819877_143853112_143853260_143887076_143887163_143906522_143906644_143968894
ONT_simulated_read_1420096	chr14	-	933	5	ISM	ENSMUSG00000063410.9	ENSMUST00000079817.8	2676	11	84534	565	84133	-565	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGCGTCATTTTTACGGA	NA	NA	NA	NA	NA	NA	NA	NA	121532212	121524319	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_121524777_121529391_121529529_121530832_121530902_121531601_121531726_121532066
ONT_simulated_read_14202229	chrX	-	335	3	ISM	ENSMUSG00000031099.17	ENSMUST00000088973.11	4798	23	50547	19225	50427	-19225	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACTATTTTAAGTAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	46930882	46917734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_46917859_46930413_46930528_46930785
ONT_simulated_read_14204516	chr4	-	577	5	ISM	ENSMUSG00000028719.9	ENSMUST00000030491.9	3170	6	17906	2288	17807	-286	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTACATCTCAATTAATGT	NA	NA	NA	NA	NA	NA	NA	NA	114826532	114818820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_114818953_114820261_114820359_114820552_114820630_114822079_114822233_114826414
ONT_simulated_read_1420752	chr5	+	741	10	ISM	ENSMUSG00000064037.14	ENSMUST00000076949.13	3144	14	26	7934	14	7254	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGGGCACCGGCTTCGA	NA	NA	NA	NA	NA	NA	NA	NA	31652110	31662314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296
ONT_simulated_read_14208547	chr2	-	309	1	ISM	ENSMUSG00000026788.14	ENSMUST00000095035.3	4925	2	7268	4490	7268	-1255	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTCCAGATGTGGCACGT	NA	NA	NA	NA	NA	NA	NA	NA	33345097	33344788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_33344800_33345100
ONT_simulated_read_14210578	chr3	-	1102	1	ISM	ENSMUSG00000048109.11	ENSMUST00000061772.11	4343	2	572	6579	-12	-6015	mono-exon	FALSE	NA	NA	NA	NA	NA	240	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGATATCACCTGAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	107240417	107239315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_107239300_107240400
ONT_simulated_read_14211157	chr6	-	584	1	ISM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	19642	4304	16595	522	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTCTGGGAGAGCCATTT	NA	NA	NA	NA	NA	NA	NA	NA	87796138	87795554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_87795600_87796100
ONT_simulated_read_14212334	chr17	-	144	2	ISM	ENSMUSG00000052142.16	ENST00000343625.12	2805	15	3952	7087	3952	-7087	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGAGAACAGCATGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	32618375	32618105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32618138_32618263
ONT_simulated_read_14213966	chr11	-	301	1	NIC	ENSMUSG00000098650.2	novel	2746	3	NA	NA	144894	-2152	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGACTCGACGGTCATGAC	NA	NA	NA	NA	NA	NA	NA	NA	22787196	22786895	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_22786900_22787200
ONT_simulated_read_14216180	chr14	-	2097	9	ISM	ENSMUSG00000022003.8	ENSMUST00000022580.8	3588	10	9910	1379	9910	-1379	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACTAAAGGAGGCTCGAAG	NA	NA	NA	NA	NA	NA	NA	NA	76014567	75998935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434_76012583_76014435
ONT_simulated_read_14218138	chr9	-	1191	1	ISM	ENSMUSG00000042396.11	ENSMUST00000213276.2	2629	4	4384	1019	4384	-1019	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACGACAGGAATCATGATG	NA	NA	NA	NA	NA	NA	NA	NA	48402210	48401019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_48401000_48402200
ONT_simulated_read_14220268	chr17	+	1982	17	ISM	ENSMUSG00000036552.20	ENSMUST00000097393.11	2535	18	1040	114	0	-114	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACCACAAATAAAGTTGA	NA	NA	NA	NA	NA	NA	NA	NA	15262509	15283998	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283863
ONT_simulated_read_14220946	chr3	+	654	6	ISM	ENSMUSG00000027763.14	ENST00000465907.6	945	7	66080	0	66080	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGTCGTCACAAAACAGT	NA	NA	NA	NA	NA	NA	NA	NA	60503131	60532601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_60503186_60520683_60520942_60523040_60523195_60528843_60528880_60529566_60529662_60532544
ONT_simulated_read_14222790	chr16	-	532	3	ISM	ENSMUSG00000022538.21	ENSMUST00000117363.9	3180	14	16086	8667	16086	-8667	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATGGGATCCTCCCTATC	NA	NA	NA	NA	NA	NA	NA	NA	30390324	30387978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_30388067_30388146_30388249_30389982
ONT_simulated_read_14223672	chr8	-	482	1	ISM	ENSMUSG00000031527.8	ENSMUST00000033927.8	5079	7	26165	3634	26165	-3634	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGATGTGTCCCTTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	35936522	35936040	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_35936000_35936500
ONT_simulated_read_14225171	chr11	+	1438	12	ISM	ENSMUSG00000062312.6	ENST00000584450.5	3632	26	14531	2138	14531	-2138	internal_fragment	FALSE	canonical	NA	NA	NA	NA	392	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGACGCCGGTTCACC	NA	NA	NA	NA	NA	NA	NA	NA	98317905	98325356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_98317977_98318081_98318282_98318739_98318873_98318961_98319053_98319649_98319811_98322542_98322591_98323736_98323876_98323956_98324080_98324224_98324324_98324717_98324904_98325039_98325196_98325325
ONT_simulated_read_14226009	chr5	-	601	2	ISM	ENSMUSG00000037007.18	ENSMUST00000165640.8	1320	4	2185	553	2185	-357	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGAGTGTAAGGATTGTG	NA	NA	NA	NA	NA	NA	NA	NA	138148976	138143481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_138143975_138148868
ONT_simulated_read_14227605	chr19	-	712	1	FSM	ENSMUSG00000095098.3	ENSMUST00000179549.3	4715	1	746	3257	356	-3252	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCCTATTACCTGGGATT	NA	NA	NA	NA	NA	NA	NA	NA	5507176	5506464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5506500_5507200
ONT_simulated_read_1422870	chr6	-	308	2	ISM	ENSMUSG00000030257.17	ENST00000618999.4	2493	19	90528	0	90528	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTAGCACAGAAGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	112716071	112712794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_112712875_112715843
ONT_simulated_read_14231199	chr4	-	246	1	ISM	ENSMUSG00000028885.9	ENSMUST00000030709.9	2006	8	23493	548	12935	-548	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACACGTGGCTTTCAACAC	NA	NA	NA	NA	NA	NA	NA	NA	132461070	132460824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_132460800_132461100
ONT_simulated_read_14231749	chr8	+	899	4	ISM	ENSMUSG00000038497.8	ENSMUST00000045229.7	4335	13	0	28052	0	-26638	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGAGTGGAGGAGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	13338210	13344872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845
ONT_simulated_read_14233148	chr1	+	377	2	ISM	ENSMUSG00000054545.18	ENSMUST00000113134.8	2297	6	4	80271	4	-80271	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACTGCAGACCCGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	88062534	88066448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_88062658_88066194
ONT_simulated_read_14237567	chr7	+	714	5	ISM	ENSMUSG00000019738.16	ENSMUST00000019882.16	819	6	0	271	0	-266	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGCGGCTGGGTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	29931372	29932544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491
ONT_simulated_read_14239885	chr6	-	260	3	ISM	ENSMUSG00000004347.18	ENSMUST00000164037.3	3068	16	183233	67470	183178	-67470	internal_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTGTGCATTACCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	56156118	56150626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_56150729_56151892_56152010_56156077
ONT_simulated_read_14241454	chr17	-	2707	9	ISM	ENSMUSG00000024335.21	ENSMUST00000114242.9	4483	13	2155	1636	44	-1296	internal_fragment	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAATCTAAGAAAGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	34338566	34332632	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335881_34336186_34337579
ONT_simulated_read_14241968	chr6	+	495	4	ISM	ENSMUSG00000030102.12	ENST00000544951.6	2799	20	305434	8352	305434	-8352	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACGAGCTGAGGAACCTG	NA	NA	NA	NA	NA	NA	NA	NA	108495692	108518933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_108495791_108496245_108496412_108500248_108500410_108518863
ONT_simulated_read_14242313	chr17	+	855	2	ISM	ENSMUSG00000024247.15	ENST00000294964.6	2398	8	13	4982	0	-4982	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGCTGACCACCATCACAGA	NA	NA	NA	NA	NA	NA	NA	NA	83522720	83527504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_83523534_83527462
ONT_simulated_read_14242877	chr2	+	1116	8	ISM	ENSMUSG00000026821.17	ENSMUST00000100241.10	3102	18	14008	311	14008	58	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGCCACACAGGTACCT	NA	NA	NA	NA	NA	NA	NA	NA	28437561	28442337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_28437633_28438124_28438158_28438395_28438518_28438681_28438778_28438966_28439169_28439301_28439545_28440460_28440576_28442103
ONT_simulated_read_14243061	chr10	+	648	3	ISM	ENSMUSG00000006345.11	ENST00000404223.5	809	4	309	2	309	-2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1636	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCGGAAGAGGCAAGATTG	NA	NA	NA	NA	NA	NA	NA	NA	75420938	75421863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_75421120_75421220_75421539_75421714
ONT_simulated_read_14243224	chr10	-	740	1	ISM	ENSMUSG00000060301.7	ENSMUST00000039271.7	4229	6	29579	2908	29504	1029	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCAATCAGCATCATAGGA	NA	NA	NA	NA	NA	NA	NA	NA	78903855	78903115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_78903100_78903900
ONT_simulated_read_14243384	chr16	-	1648	20	ISM	ENSMUSG00000022771.18	ENSMUST00000023455.14	2333	21	1563	570	1519	191	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCCTAGTGGATGCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	16927558	16904988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508
ONT_simulated_read_14244672	chr3	-	176	2	ISM	ENSMUSG00000038550.11	ENSMUST00000159739.8	1939	5	1694	574	1694	-572	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGGACATTTAGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	95787823	95786388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95786462_95787720
ONT_simulated_read_14245398	chr2	+	184	2	ISM	ENSMUSG00000026975.11	ENSMUST00000028351.9	1666	9	66	9117	66	-9117	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTTCGTTTAGGTCGTCT	NA	NA	NA	NA	NA	NA	NA	NA	24852477	24853058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_24852638_24853034
ONT_simulated_read_14245495	chr18	-	2002	1	Antisense	novelGene_ENSMUSG00000073639.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	312	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTATAGTTCTACATAAC	NA	NA	NA	NA	NA	NA	NA	NA	6791073	6789071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr18_-_6789100_6791100
ONT_simulated_read_1424722	chr16	-	2457	12	ISM	ENSMUSG00000052459.14	ENSMUST00000063661.13	3896	15	27484	965	27484	-965	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAGTCAGACAAGCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	43932075	43906972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860
ONT_simulated_read_1424954	chr11	+	1126	3	FSM	ENSMUSG00000049354.9	ENST00000415273.2	1217	3	12	79	12	-79	multi-exon	FALSE	canonical	NA	NA	NA	NA	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGTTTCTTGATTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	105927776	105946205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_105928088_105944556_105944675_105945508
ONT_simulated_read_14250321	chr4	-	2466	1	ISM	ENSMUSG00000038544.15	ENSMUST00000095063.11	3237	5	11411	353	11353	-353	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTAGCGCTGGACTCGGAT	NA	NA	NA	NA	NA	NA	NA	NA	59772455	59769989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_59770000_59772500
ONT_simulated_read_14251023	chr4	-	932	1	ISM	ENSMUSG00000028656.15	ENSMUST00000069533.12	2620	13	25694	239	25694	-239	mono-exon	FALSE	NA	NA	NA	NA	NA	271	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCAGAATCTTGCACAGCA	NA	NA	NA	NA	NA	NA	NA	NA	122754010	122753078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_122753100_122754000
ONT_simulated_read_14254577	chr2	+	250	3	ISM	ENSMUSG00000074607.12	ENSMUST00000165937.8	1675	9	0	47084	0	-47084	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGCCTCCCAATCTCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	163067373	163117938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_163067508_163089686_163089753_163117888
ONT_simulated_read_14255200	chr15	-	644	6	ISM	ENSMUSG00000000934.10	ENSMUST00000000958.9	1903	14	11194	746	11194	-746	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTGCGCGAAGGCCACA	NA	NA	NA	NA	NA	NA	NA	NA	75539455	75529629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75529680_75535204_75535300_75535863_75535992_75537435_75537551_75538101_75538171_75539268
ONT_simulated_read_14255773	chr18	+	1172	1	ISM	ENSMUSG00000038418.8	ENSMUST00000064795.6	4484	2	0	3990	0	-3962	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAGCCTGAGCGCTCGCG	NA	NA	NA	NA	NA	NA	NA	NA	34992875	34994047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_34992900_34994000
ONT_simulated_read_14255775	chr9	-	1052	10	ISM	ENSMUSG00000032422.19	ENST00000683754.1	2883	28	31345	17612	15554	-17612	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTGAAAGAAACGACAGAC	NA	NA	NA	NA	NA	NA	NA	NA	88289518	88276445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_88276622_88280291_88280425_88282775_88282803_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286751_88286797_88287292_88287369_88289378
ONT_simulated_read_14255918	chr9	-	582	3	ISM	ENSMUSG00000066839.13	ENST00000592312.5	1042	5	2931	-208	2931	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	21984862	21983541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21983877_21984277_21984384_21984721
ONT_simulated_read_14256134	chr6	-	771	7	ISM	ENSMUSG00000004980.17	ENSMUST00000203220.3	1638	11	3368	296	3368	-296	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGGATTGTAAAAAAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	51443384	51440035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282
ONT_simulated_read_14256776	chr6	-	1768	19	ISM	ENSMUSG00000063884.7	ENSMUST00000082094.5	2581	24	5790	491	5790	-491	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCTGGAATGTTAGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	71879944	71858114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839
ONT_simulated_read_1425853	chr17	-	486	4	ISM	ENSMUSG00000024099.16	ENSMUST00000024909.15	927	9	13941	0	13941	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAAGCTTTATTCGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	66394549	66386435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397
ONT_simulated_read_14265745	chr6	-	465	1	ISM	ENSMUSG00000030304.12	ENSMUST00000136008.8	4174	14	30635	2196	30635	-2196	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAACTAGTCTAGACTTTA	NA	NA	NA	NA	NA	NA	NA	NA	148083237	148082772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_148082800_148083200
ONT_simulated_read_14271617	chr5	-	225	3	ISM	ENSMUSG00000025747.13	ENSMUST00000026846.11	3163	7	10232	2304	10232	-2304	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCGAGAACCAAGACCTTT	NA	NA	NA	NA	NA	NA	NA	NA	30268383	30266128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_30266132_30266965_30267038_30268233
ONT_simulated_read_14273226	chr6	-	2236	10	ISM	ENSMUSG00000061436.16	ENST00000342645.7	2658	11	32	15475	32	-15475	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGCAGCAGCCTGCACT	NA	NA	NA	NA	NA	NA	NA	NA	38796214	38695834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_38695869_38698389_38698533_38706855_38706978_38707803_38708012_38714292_38714456_38720010_38720196_38722598_38722686_38724381_38724502_38724808_38724933_38795164
ONT_simulated_read_14273427	chr1	-	178	1	FSM	ENSMUSG00000089967.2	ENSMUST00000162550.2	126	1	0	-52	0	52	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAATGATGACAGCCATTA	NA	NA	NA	NA	NA	NA	NA	NA	164976518	164976340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_164976300_164976500
ONT_simulated_read_14275154	chr17	-	924	6	ISM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	10622	258	10622	-258	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGGTGGCCTCTTGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	36270031	36267968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960
ONT_simulated_read_14275619	chr10	-	2026	11	NNC	ENSMUSG00000036112.16	novel	1984	11	NA	NA	-480	-421	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTATTAAAACTTAGTC	NA	NA	NA	NA	NA	NA	NA	NA	93726156	93697222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715499_93715934_93716001_93722855_93722964_93725399
ONT_simulated_read_14277898	chr17	-	637	3	ISM	ENSMUSG00000040680.10	ENST00000572045.5	2122	7	1867	787	1761	-787	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	211	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTACTGCGTTTGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	23962238	23961197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_23961457_23961535_23961869_23962193
ONT_simulated_read_14281428	chr8	+	734	8	ISM	ENSMUSG00000031629.15	ENSMUST00000034045.15	2931	13	9700	3755	9641	-2116	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAATATGATGACCTTA	NA	NA	NA	NA	NA	NA	NA	NA	47014762	47029287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260
ONT_simulated_read_14285216	chr7	+	546	5	NNC	ENSMUSG00000031097.16	novel	768	7	NA	NA	0	-332	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAGGGCCAACCTGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	141996066	141997773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_141996236_141996907_141996950_141997054_141997169_141997307_141997398_141997642
ONT_simulated_read_14288685	chrX	-	2892	23	ISM	ENSMUSG00000031012.18	ENSMUST00000115436.9	8260	25	131789	4702	131333	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGGGTGGAACACTACAT	NA	NA	NA	NA	NA	NA	NA	NA	13580991	13388020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_13388587_13392236_13392321_13399578_13399782_13403824_13403906_13403999_13404081_13410752_13410869_13415403_13415601_13417185_13417222_13421116_13421186_13423230_13423317_13425558_13425638_13427753_13427943_13434714_13434796_13437272_13437351_13453082_13453205_13466595_13466696_13474972_13475057_13480708_13480832_13486888_13487065_13492433_13492537_13543823_13543897_13549209_13549288_13580904
ONT_simulated_read_14289444	chr13	-	233	1	ISM	ENSMUSG00000021468.9	ENSMUST00000021920.8	2606	15	43439	978	43439	-978	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTTTCTGCAGTGCCGTG	NA	NA	NA	NA	NA	NA	NA	NA	53487994	53487761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_53487800_53488000
ONT_simulated_read_14293419	chr7	-	1557	1	ISM	ENSMUSG00000039405.8	ENSMUST00000041761.7	3228	2	7547	700	7547	620	mono-exon	FALSE	NA	NA	NA	NA	NA	529	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGCCCAGCAGGCAAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	89159247	89157690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_89157700_89159200
ONT_simulated_read_14296170	chr15	-	303	3	ISM	ENSMUSG00000054967.8	ENSMUST00000048854.8	1608	4	250	1262	250	-1262	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATCAGCGACGCTGACG	NA	NA	NA	NA	NA	NA	NA	NA	76801960	76796312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76796376_76801489_76801604_76801834
ONT_simulated_read_14297223	chr10	+	318	1	ISM	ENSMUSG00000020265.17	ENSMUST00000099538.6	1874	4	0	10534	0	-9419	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATCCAACGGGAGATAAAC	NA	NA	NA	NA	NA	NA	NA	NA	77442404	77442722	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_77442400_77442700
ONT_simulated_read_14297983	chr8	+	2314	12	ISM	ENSMUSG00000036712.16	ENSMUST00000109626.4	7945	16	0	10591	0	-6027	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGAGTACCCACAATTCA	NA	NA	NA	NA	NA	NA	NA	NA	89431849	89467982	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918
ONT_simulated_read_14302546	chr6	+	232	1	ISM	ENSMUSG00000029661.17	ENSMUST00000031668.10	5348	52	0	35820	0	-35820	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACTAAGTTGGAGGGAACG	NA	NA	NA	NA	NA	NA	NA	NA	4505492	4505724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_4505500_4505700
ONT_simulated_read_14308296	chr7	-	307	1	ISM	ENSMUSG00000025586.18	ENSMUST00000098331.10	3111	12	106345	1081	23788	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	452	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTCAAGCAATTGTAGTT	NA	NA	NA	NA	NA	NA	NA	NA	80998161	80997854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80997900_80998200
ONT_simulated_read_14308380	chr11	-	1610	1	ISM	ENSMUSG00000020493.9	ENSMUST00000051395.9	3824	10	16876	1070	16876	-1070	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTAAGGGGAGTAGATG	NA	NA	NA	NA	NA	NA	NA	NA	86982658	86981048	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_86981000_86982700
ONT_simulated_read_14310025	chr3	-	751	7	ISM	ENSMUSG00000028064.18	ENST00000355014.6	2827	13	10	13782	10	-13782	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCCACGCGGTCCTGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	88360417	88357058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_88357160_88357294_88357420_88357817_88357935_88358651_88358758_88358994_88359094_88359326_88359390_88360277
ONT_simulated_read_1431024	chr4	-	597	2	ISM	ENSMUSG00000046671.19	ENSMUST00000102550.10	2025	7	5890	656	3349	-642	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	258	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATAATTGGGTAGAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	134256689	134253516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_134253824_134256399
ONT_simulated_read_14310517	chr2	-	1570	7	ISM	ENSMUSG00000039033.12	ENSMUST00000046656.9	2480	14	89047	0	89047	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTGTGACTGCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	139819633	139675399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_139676368_139699621_139699696_139725691_139725803_139752452_139752564_139789076_139789156_139793379_139793500_139819526
ONT_simulated_read_14315241	chr14	-	1372	1	ISM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	15741	674	15494	-662	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATACTGACACTCTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	52501261	52499889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52499900_52501300
ONT_simulated_read_14316172	chr19	-	1403	14	ISM	ENSMUSG00000024887.11	ENST00000329428.10	2004	19	14326	-3	14326	3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTGACAGATATTGAAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	32020932	31964151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_31964348_31969401_31969491_31972741_31972802_31981083_31981231_31983657_31983754_31985979_31986076_31986805_31986846_31989825_31989921_31991601_31991718_31993884_31993967_31996341_31996429_31999653_31999780_32002200_32002322_32020880
ONT_simulated_read_1431629	chr16	-	221	2	ISM	ENSMUSG00000022863.16	ENSMUST00000023570.14	1414	5	11810	657	11810	-657	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCCAATGTGGCACCCT	NA	NA	NA	NA	NA	NA	NA	NA	78161888	78157404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_78157427_78161689
ONT_simulated_read_1431808	chr6	+	430	3	FSM	ENSMUSG00000034245.11	ENST00000405025.5	426	3	-4	0	-4	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTCCTAGCACAGGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	91134378	91149326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_91134528_91136142_91136244_91149146
ONT_simulated_read_14318703	chr2	+	194	1	NIC	ENSMUSG00000027582.17	novel	2293	7	NA	NA	47	-15137	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCGAATCCTGCCTGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	181007244	181007438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_+_181007200_181007400
ONT_simulated_read_14319503	chr2	-	911	8	ISM	ENSMUSG00000027215.14	ENSMUST00000111257.8	1003	10	15242	-88	15242	88	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTGGGAACTTTCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	93267782	93250086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732
ONT_simulated_read_14320443	chr14	+	982	5	ISM	ENSMUSG00000063506.15	ENSMUST00000111955.2	2148	6	0	3072	0	-581	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAAGTCTTCTTTTCG	NA	NA	NA	NA	NA	NA	NA	NA	33041659	33088819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_33041890_33065185_33065315_33081074_33081283_33086349_33086472_33088526
ONT_simulated_read_14320470	chr16	+	1741	4	ISM	ENSMUSG00000039473.9	ENSMUST00000052449.6	6455	19	27988	883	27322	-883	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTCGCAGTGGGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	4895919	4903266	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_4895980_4899281_4899526_4899757_4899848_4901919
ONT_simulated_read_14320553	chr8	+	203	1	FSM	ENSMUSG00000095762.2	ENSMUST00000179168.2	342	1	0	139	0	-139	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAATGGTACTGTAATTG	NA	NA	NA	NA	NA	NA	NA	NA	123568469	123568672	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_123568500_123568700
ONT_simulated_read_14327086	chr4	-	553	1	FSM	ENSMUSG00000082575.2	ENSMUST00000122149.2	1345	1	0	792	0	-792	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAATAAGCACAAGCGGCT	NA	NA	NA	NA	NA	NA	NA	NA	142969938	142969385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_142969400_142969900
ONT_simulated_read_14328459	chr12	-	1402	1	ISM	ENSMUSG00000021071.18	ENSMUST00000110522.10	4405	14	100934	482	100874	91	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCTGATTAGTTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	70293190	70291788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_70291800_70293200
ONT_simulated_read_1432879	chr16	-	1624	9	ISM	ENSMUSG00000022962.16	ENSMUST00000231380.2	1852	11	5235	0	5235	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTTGATTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	91438578	91430292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481
ONT_simulated_read_14329821	chr10	-	292	1	ISM	ENSMUSG00000020235.17	ENSMUST00000140901.8	3057	14	10989	1014	3886	273	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTCACCTGGGGACCTG	NA	NA	NA	NA	NA	NA	NA	NA	81203361	81203069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_81203100_81203400
ONT_simulated_read_14332823	chr2	+	736	6	ISM	ENSMUSG00000026827.13	ENSMUST00000028167.3	5620	17	0	63743	0	-63743	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGTTGCAGGGAGTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	57128393	57196988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_57128580_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943
ONT_simulated_read_14333297	chr2	+	411	2	ISM	ENSMUSG00000052248.18	ENSMUST00000231986.2	443	4	245	523	245	-9	internal_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACGCTTTAGTGGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	45002744	45003260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_45003006_45003110
ONT_simulated_read_14333812	chr4	-	525	1	ISM	ENSMUSG00000028467.16	ENSMUST00000030189.14	3544	17	11420	1	1094	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	290	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTAGTGTGGTGTGTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	43567453	43566928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_43566900_43567500
ONT_simulated_read_14334502	chr10	-	1455	13	ISM	ENSMUSG00000020166.16	ENSMUST00000164088.8	2618	14	31780	1032	31780	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTCCCTTTTCTTGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	116353288	116322101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221
ONT_simulated_read_1433471	chr19	+	690	8	ISM	ENSMUSG00000025001.12	ENSMUST00000025965.12	5868	22	115	27137	115	-27137	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTAGAAGGCATGGAATG	NA	NA	NA	NA	NA	NA	NA	NA	38919473	38932358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_38919520_38919834_38919957_38923857_38923981_38926849_38926907_38928914_38928952_38929040_38929106_38930897_38930937_38932157
ONT_simulated_read_14335991	chr7	+	747	6	ISM	ENSMUSG00000040268.18	ENST00000392799.7	1735	11	22802	481	22802	-481	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCGCCACTCACCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	130502263	130512893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130512561
ONT_simulated_read_14342104	chr9	+	444	3	Fusion	ENSMUSG00000096736.2_ENSMUSG00000074564.4	novel	669	5	NA	NA	0	0	intron_retention	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTCCATGTCCTACAGT	NA	NA	NA	NA	NA	NA	NA	NA	3015653	3035805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Fusion_chr9_+_3015818_3024411_3024567_3035680
ONT_simulated_read_14342726	chr12	-	409	1	ISM	ENSMUSG00000008822.16	ENSMUST00000008966.13	648	3	7618	11	7266	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1689	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTATGCTTACATTGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	85319591	85319182	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_85319200_85319600
ONT_simulated_read_1434485	chr7	-	264	2	ISM	ENSMUSG00000030680.7	ENSMUST00000162069.3	422	3	1072	80	1069	-80	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTACAGGTGCAGACTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	126615420	126614426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126614642_126615371
ONT_simulated_read_1434621	chr14	-	178	2	ISM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	7514	2083	7514	-2083	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGGGTAAGTAGAAATTAT	NA	NA	NA	NA	NA	NA	NA	NA	52535071	52534380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52534415_52534927
ONT_simulated_read_14346985	chr5	-	772	4	ISM	ENSMUSG00000106864.4	ENSMUST00000088010.12	4552	19	6058	13831	415	3178	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTTGATTGGTATCTCT	NA	NA	NA	NA	NA	NA	NA	NA	31331430	31327179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_31327258_31327523_31327619_31330125_31330406_31331111
ONT_simulated_read_14347608	chr2	+	704	1	ISM	ENSMUSG00000027519.11	ENSMUST00000029024.10	7155	7	41343	5537	41247	652	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTGGTGAGATTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	173542895	173543599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_173542900_173543600
ONT_simulated_read_1435036	chr9	+	353	3	ISM	ENSMUSG00000015656.18	ENSMUST00000117557.8	2019	9	-15	2702	-15	-2620	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	2570	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGCAGGCAGGCCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	40712582	40713794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_40712645_40713213_40713424_40713713
ONT_simulated_read_1435186	chr6	-	168	1	NIC	ENSMUSG00000030218.3	novel	617	4	NA	NA	3034	-187	mono-exon	FALSE	NA	NA	NA	NA	NA	475	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGAGTTTCGTTTTATAT	NA	NA	NA	NA	NA	NA	NA	NA	136849787	136849619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_136849600_136849800
ONT_simulated_read_1435231	chr11	+	690	7	FSM	ENSMUSG00000033066.17	ENST00000396115.6	745	7	10	45	10	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	972	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGTCCGGGGGGTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	67487399	67574286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_67487526_67493933_67494055_67520435_67520517_67534106_67534193_67543684_67543739_67573460_67573560_67574163
ONT_simulated_read_14355071	chr7	-	727	1	ISM	ENSMUSG00000030641.11	ENSMUST00000032877.11	3387	6	13938	2058	13938	-2058	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAACAGAGGTCTTCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	92509517	92508790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_92508800_92509500
ONT_simulated_read_14355096	chr14	-	1625	1	ISM	ENSMUSG00000033166.12	ENSMUST00000042471.11	5150	21	22330	610	22330	-610	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCACTGACATGATGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	99314876	99313251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_99313300_99314900
ONT_simulated_read_14357987	chrX	+	486	5	ISM	ENSMUSG00000031107.7	ENSMUST00000033433.3	1747	6	0	1763	0	-1763	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTGACTAGAGAGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	47783880	47797837	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_47783998_47784196_47784313_47786277_47786330_47795181_47795312_47797766
ONT_simulated_read_14360814	chr9	-	423	4	ISM	ENSMUSG00000025646.10	ENSMUST00000161521.8	2381	12	6173	5948	6173	-5948	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAGAGAAGCACAGAACTT	NA	NA	NA	NA	NA	NA	NA	NA	108896947	108894800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_108894868_108895033_108895161_108896084_108896187_108896820
ONT_simulated_read_14361992	chr12	-	1062	1	ISM	ENSMUSG00000020652.18	ENSMUST00000140975.8	4348	7	19693	1873	19364	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACAACAGTCTCATCAAGT	NA	NA	NA	NA	NA	NA	NA	NA	4264601	4263539	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_4263500_4264600
ONT_simulated_read_14363167	chr3	-	1450	1	ISM	ENSMUSG00000037531.9	ENSMUST00000043966.8	3364	7	9449	852	9449	-852	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGGCCTCTTAGTGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	32781847	32780397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_32780400_32781800
ONT_simulated_read_14367743	chr17	-	1861	7	ISM	ENSMUSG00000024212.10	ENSMUST00000025053.10	3636	12	35122	1085	35122	-1085	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCCACATGTGCGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	57207293	57200695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_57201591_57201666_57201739_57201830_57201903_57201998_57202099_57203208_57203318_57204379_57204468_57206768
ONT_simulated_read_14368723	chr7	-	1008	6	ISM	ENSMUSG00000035901.15	ENST00000530044.5	4050	23	38723	20395	38723	-20395	internal_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCATCCGTCAGCCCAAAC	NA	NA	NA	NA	NA	NA	NA	NA	109520680	109514027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_109514060_109515417_109515512_109516591_109516743_109517800_109518036_109518468_109518685_109520400
ONT_simulated_read_14373517	chr8	-	405	4	ISM	ENSMUSG00000039375.17	ENST00000508596.6	4136	28	47167	10410	47167	-10134	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGGCAATGTATTTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	55102267	55092959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_55093013_55096148_55096261_55101254_55101395_55102167
ONT_simulated_read_14376108	chr5	-	788	2	ISM	ENSMUSG00000035273.15	ENSMUST00000045617.15	3117	12	34597	899	34467	-899	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACCCTGTGCCTCTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	100832985	100828248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_100828897_100832845
ONT_simulated_read_14377913	chr6	-	2211	17	ISM	ENSMUSG00000037709.14	ENSMUST00000089860.12	5786	18	21054	3326	10	-38	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTGACTAAGGAATTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	58980480	58912400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_58912697_58916280_58916383_58917105_58917303_58921105_58921190_58923024_58923121_58930434_58930519_58931186_58931408_58932200_58932283_58933021_58933161_58933638_58933844_58942045_58942194_58950139_58950183_58951015_58951093_58960873_58961061_58964140_58964318_58966728_58966771_58980449
ONT_simulated_read_14378612	chr4	-	1215	1	ISM	ENSMUSG00000028893.9	ENSMUST00000030724.9	3475	10	16714	541	16714	-541	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCCACAGTCAGCCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	132221098	132219883	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_132219900_132221100
ONT_simulated_read_1437897	chr17	+	1560	10	ISM	ENSMUSG00000061950.18	ENSMUST00000160664.8	3784	20	41167	879	41167	-879	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGAGCCTGGCCTCGACT	NA	NA	NA	NA	NA	NA	NA	NA	66131527	66148038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
ONT_simulated_read_14383854	chr7	-	706	1	ISM	ENSMUSG00000053801.19	ENSMUST00000131384.3	1974	8	4877	139	4722	-135	mono-exon	FALSE	NA	NA	NA	NA	NA	219	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGTTAGATTTGGTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	45475491	45474785	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45474800_45475500
ONT_simulated_read_14384165	chr5	-	660	2	ISM	ENSMUSG00000001098.16	ENSMUST00000001125.6	1026	7	13119	-259	13102	259	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGTGAGAACCTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	114505425	114503423	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_114503928_114505269
ONT_simulated_read_14384820	chr4	+	414	5	ISM	ENSMUSG00000029068.17	ENSMUST00000030944.11	2442	11	1008	3704	1008	-3704	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCAAGAAATTTGCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	155897953	155905296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155898026_155899699_155899821_155902379_155902445_155904785_155904886_155905240
ONT_simulated_read_14390462	chr6	+	653	4	ISM	ENSMUSG00000056666.14	ENSMUST00000070597.13	3027	11	153	5712	0	-4668	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTCCTCAGCAAGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	72575610	72579696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637
ONT_simulated_read_14392971	chr4	-	741	2	ISM	ENSMUSG00000028952.13	ENSMUST00000066715.11	2218	11	616	6163	616	-6163	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTGATTAGAAAACCCT	NA	NA	NA	NA	NA	NA	NA	NA	152111502	152110393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_152110477_152110844
ONT_simulated_read_14393326	chr1	-	797	1	ISM	ENSMUSG00000040265.17	ENSMUST00000086074.12	7523	21	485980	3956	303526	435	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTCTGAGAAGATAGAATT	NA	NA	NA	NA	NA	NA	NA	NA	161819623	161818826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_161818800_161819600
ONT_simulated_read_14394201	chrX	-	382	1	ISM	ENSMUSG00000034403.17	ENSMUST00000113792.2	3038	3	2979	2179	2378	-1767	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTGTGGCAAGGTAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	98511900	98511518	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_98511500_98511900
ONT_simulated_read_14396741	chr4	-	391	1	ISM	ENSMUSG00000028413.14	ENSMUST00000030121.13	3983	6	46706	2307	46706	2245	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCAAAACTTAGTGACTG	NA	NA	NA	NA	NA	NA	NA	NA	40807299	40806908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_40806900_40807300
ONT_simulated_read_14397408	chr6	+	1225	3	ISM	ENSMUSG00000030207.16	ENSMUST00000111915.8	4221	13	33624	1398	33624	-1398	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCATCTCTTCCCGCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	135208598	135211842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_135208737_135210253_135210475_135210976
ONT_simulated_read_14401647	chr7	-	716	5	ISM	ENSMUSG00000005575.17	ENSMUST00000005714.14	1472	6	1625	91	1625	-91	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCAATGGGCCTGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	12770575	12769255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492
ONT_simulated_read_14403120	chr17	-	575	1	ISM	ENSMUSG00000016946.7	ENSMUST00000017090.6	2443	6	24072	1105	24072	-1105	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCTTCAGAGCCAGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	24268387	24267812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24267800_24268400
ONT_simulated_read_1440323	chr6	-	870	6	ISM	ENSMUSG00000029790.17	ENST00000675962.1	1161	9	27372	93	27339	-93	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATGACCACAAAAACCAGA	NA	NA	NA	NA	NA	NA	NA	NA	30666336	30655530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_30655850_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265
ONT_simulated_read_14403994	chr6	-	719	1	ISM	ENSMUSG00000053907.11	ENSMUST00000205335.2	3387	8	4451	1588	-65	-94	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGAAGAAGCCAATTTATC	NA	NA	NA	NA	NA	NA	NA	NA	72412088	72411369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_72411400_72412100
ONT_simulated_read_1440590	chr7	-	115	1	ISM	ENSMUSG00000006095.13	ENSMUST00000006254.6	1416	6	7926	101	6892	0	mono-exon	FALSE	NA	NA	NA	NA	NA	213	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACCTGGAAGGAGGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	29923771	29923656	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_29923700_29923800
ONT_simulated_read_14406122	chr18	+	2035	1	ISM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	25922	1328	25829	-1328	mono-exon	FALSE	NA	NA	NA	NA	NA	435	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTACCATTGTTTTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	6791066	6793101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_6791100_6793100
ONT_simulated_read_14408165	chr9	+	661	3	ISM	ENSMUSG00000032369.14	ENSMUST00000093801.10	2302	9	0	12982	0	-12679	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGGGAACATATATGCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	92131802	92141349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_92132414_92140100_92140128_92141326
ONT_simulated_read_14408265	chr15	+	2456	10	NIC	ENSMUSG00000022150.17	novel	4663	15	NA	NA	35461	-335	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAACTTCTCAAATCCACC	NA	NA	NA	NA	NA	NA	NA	NA	6451720	6468774	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_+_6451848_6452566_6452648_6453677_6453732_6454115_6454179_6458776_6459431_6460434_6460589_6464645_6465282_6465871_6465979_6466463_6466532_6468262
ONT_simulated_read_1440917	chr19	-	725	1	ISM	ENSMUSG00000039652.17	ENST00000412050.8	7522	10	149943	4976	149943	319	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGTAGTTGCTCTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	37002444	37001719	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_37001700_37002400
ONT_simulated_read_14409273	chr4	+	748	7	ISM	ENSMUSG00000028683.15	ENSMUST00000106447.9	3754	10	25068	2593	22321	-2593	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACACAAATTGGAGAGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	116901672	116927864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_116901793_116909920_116910033_116915960_116916051_116922537_116922666_116923570_116923762_116925940_116926019_116927835
ONT_simulated_read_14414983	chr15	-	577	4	ISM	ENSMUSG00000022557.12	ENSMUST00000023217.11	2491	16	22919	560	22919	-560	internal_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGGCCTTCCACCCCCG	NA	NA	NA	NA	NA	NA	NA	NA	76338558	76337748	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76337771_76337843_76337929_76338016_76338306_76338377
ONT_simulated_read_1441792	chr10	-	1088	7	ISM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	51	1528	24	-374	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTGCCCAGAATAGATG	NA	NA	NA	NA	NA	NA	NA	NA	128540848	128535340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ONT_simulated_read_1442182	chr15	-	389	1	NIC	ENSMUSG00000053559.14	novel	1135	4	NA	NA	8739	0	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAGTGCTCGAAACCGA	NA	NA	NA	NA	NA	NA	NA	NA	100519908	100519519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_100519500_100519900
ONT_simulated_read_14423254	chr9	-	945	11	ISM	ENSMUSG00000032590.15	ENSMUST00000193254.6	2518	22	2222	1633	2222	-1633	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGGCTTTGCAGTACTAC	NA	NA	NA	NA	NA	NA	NA	NA	107969583	107964244	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474
ONT_simulated_read_1442377	chr6	-	932	4	ISM	ENSMUSG00000036667.15	ENSMUST00000121083.8	3342	9	16069	302	2402	-302	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGATCTCAACAAATTTCA	NA	NA	NA	NA	NA	NA	NA	NA	42653952	42647177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_42647258_42650286_42650573_42651975_42652314_42653724
ONT_simulated_read_14425628	chr6	-	930	6	ISM	ENSMUSG00000019210.11	ENSMUST00000019354.11	1312	9	15141	0	10749	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	276	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTTGTTGTTCCTTATG	NA	NA	NA	NA	NA	NA	NA	NA	120784613	120772204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_120772726_120774837_120774926_120778003_120778099_120780268_120780338_120781003_120781094_120784546
ONT_simulated_read_1442905	chr5	-	4695	16	ISM	ENSMUSG00000029471.14	ENSMUST00000111668.8	4861	17	15115	0	15058	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGGGCCTCTCGGGGGTT	NA	NA	NA	NA	NA	NA	NA	NA	122902330	122869232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_122872309_122875050_122875094_122875495_122875597_122880162_122880292_122881932_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836
ONT_simulated_read_14429290	chrX	+	1604	13	ISM	ENSMUSG00000037369.18	ENSMUST00000044484.13	5918	29	73	32916	5	-32831	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTACTTCCTAGTATTGAG	NA	NA	NA	NA	NA	NA	NA	NA	18028886	18113259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113213
ONT_simulated_read_14429459	chr3	-	538	5	ISM	ENSMUSG00000038170.16	ENST00000369349.7	4558	23	171	63723	171	317	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTGTCTCAAGAGAAACG	NA	NA	NA	NA	NA	NA	NA	NA	97731639	97700120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_97700173_97700460_97700637_97700800_97700925_97704047_97704125_97731530
ONT_simulated_read_14433753	chr7	-	498	2	ISM	ENSMUSG00000003123.16	ENSMUST00000206861.2	3171	9	5910	962	5910	-962	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCTCTACACGTCACCCA	NA	NA	NA	NA	NA	NA	NA	NA	25082739	25080047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_25080382_25082575
ONT_simulated_read_14438016	chr2	-	899	1	ISM	ENSMUSG00000067787.11	ENSMUST00000109528.9	2056	2	8018	1059	8018	-1059	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCAAATTTGAAGAGATTG	NA	NA	NA	NA	NA	NA	NA	NA	157400239	157399340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_157399300_157400200
ONT_simulated_read_14438427	chr9	-	1944	9	ISM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	27088	1542	27025	-1542	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACGTGAGCTAGCTATGGT	NA	NA	NA	NA	NA	NA	NA	NA	75439851	75406530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707
ONT_simulated_read_14438830	chr8	-	997	7	ISM	ENSMUSG00000031823.15	ENSMUST00000034280.9	3069	8	8520	1642	8520	-1642	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGGGAATGTCTGCAGACA	NA	NA	NA	NA	NA	NA	NA	NA	120819701	120809270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_120809456_120809968_120810100_120811582_120811665_120812083_120812181_120813367_120813493_120814492_120814824_120819655
ONT_simulated_read_14440719	chr5	+	791	6	ISM	ENSMUSG00000029622.17	ENSMUST00000196111.5	1394	10	9367	369	9367	-248	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGCATCTGGGACGTGA	NA	NA	NA	NA	NA	NA	NA	NA	145060488	145064514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_145060602_145061396_145061505_145062387_145062595_145062688_145062777_145063536_145063743_145064445
ONT_simulated_read_1444333	chr19	-	338	4	ISM	ENSMUSG00000016495.13	ENSMUST00000016639.12	1012	7	3588	270	3491	-270	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGAAGCTGGAGCTGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	29335782	29326374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_29326406_29327759_29327870_29328443_29328575_29335716
ONT_simulated_read_14443898	chr7	+	1231	5	ISM	ENSMUSG00000030987.6	ENSMUST00000033289.6	4085	12	158190	1253	157669	165	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTATTTATTAACTGACC	NA	NA	NA	NA	NA	NA	NA	NA	102075202	102085272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_102075348_102075906_102076008_102076288_102076525_102080091_102080159_102084590
ONT_simulated_read_14445643	chr16	-	2462	10	ISM	ENSMUSG00000052459.14	ENSMUST00000063661.13	3896	15	29550	607	29550	-607	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTCAGTGTGTTTAAATA	NA	NA	NA	NA	NA	NA	NA	NA	43930009	43906614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857
ONT_simulated_read_14446544	chr18	-	1527	1	NIC	ENSMUSG00000086607.8	novel	698	4	NA	NA	3508	-831	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCCCGGGTATGGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	57681443	57679916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_57679900_57681400
ONT_simulated_read_14447917	chr8	+	601	1	ISM	ENSMUSG00000001065.16	ENSMUST00000001092.15	4071	11	14324	626	14324	-626	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTGAGCAGCAGCCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	123995257	123995858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_123995300_123995900
ONT_simulated_read_14448761	chr4	-	673	6	ISM	ENSMUSG00000025413.14	ENSMUST00000026480.13	2121	10	2223	5281	2145	-4473	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGGACTCAGAGCACAAG	NA	NA	NA	NA	NA	NA	NA	NA	106533918	106524733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_106524775_106525233_106525452_106527645_106527733_106528820_106528946_106531607_106531686_106533794
ONT_simulated_read_14449183	chr3	+	780	9	ISM	ENSMUSG00000074182.9	ENSMUST00000199033.5	1127	11	0	7958	0	-4409	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAATTTTAATGAGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	145281959	145301910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_145282049_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878
ONT_simulated_read_14449285	chr1	-	437	4	ISM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	5730	346	5730	-346	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGGAAAAGAAGCTCAAG	NA	NA	NA	NA	NA	NA	NA	NA	10102622	10095171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563
ONT_simulated_read_14450992	chr7	-	613	1	ISM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	3750	1343	3750	-1343	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACTGATGGGACTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	119316271	119315658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_119315700_119316300
ONT_simulated_read_14451511	chr8	+	471	1	ISM	ENSMUSG00000031577.11	ENSMUST00000209851.2	3133	7	25	10244	13	-7946	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGGGGGCGAGCCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	31640367	31640838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_31640400_31640800
ONT_simulated_read_14452740	chr2	-	552	1	ISM	ENSMUSG00000036591.17	ENSMUST00000154230.9	6972	25	117365	1886	32941	405	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACCAGCCTGGACTCCA	NA	NA	NA	NA	NA	NA	NA	NA	20855167	20854615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_20854600_20855200
ONT_simulated_read_1445341	chr7	-	249	1	ISM	ENSMUSG00000074358.10	ENSMUST00000098780.10	2022	14	19284	0	19284	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	NA	NA	NA	NA	NA	NA	NA	NA	18625056	18624807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_18624800_18625100
ONT_simulated_read_1445439	chr10	+	678	5	ISM	ENSMUSG00000035311.17	ENSMUST00000020251.10	5390	21	56818	7779	56818	-7779	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGAATTCCCTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	88271905	88275412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_88272064_88272213_88272434_88273296_88273411_88274989_88275076_88275312
ONT_simulated_read_14455166	chr18	+	687	7	ISM	ENSMUSG00000024283.16	ENSMUST00000172018.8	1965	14	0	15583	0	-15583	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAATATTTTGTCTCAAAC	NA	NA	NA	NA	NA	NA	NA	NA	7869500	7910556	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_7869578_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515
ONT_simulated_read_14455541	chr13	+	333	1	FSM	ENSMUSG00000074800.5	ENSMUST00000099371.5	276	1	0	-57	0	57	mono-exon	FALSE	NA	NA	NA	NA	NA	253	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	75793014	75793347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_75793000_75793300
ONT_simulated_read_14459451	chr16	+	703	8	ISM	ENSMUSG00000022770.18	ENST00000667971.1	3518	23	173342	4762	83376	-3922	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGCCAGAAAAACATTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	31656976	31686677	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_31657045_31661587_31661658_31665651_31665752_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648
ONT_simulated_read_14460467	chr11	-	915	7	ISM	ENSMUSG00000020471.12	ENSMUST00000102922.10	1646	11	3886	84	3886	-84	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTAGTGAGAGGCAGCGGG	NA	NA	NA	NA	NA	NA	NA	NA	5824406	5822263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314
ONT_simulated_read_14462352	chr13	+	576	8	ISM	ENSMUSG00000003992.16	ENST00000509053.5	1475	15	-21	26141	-21	-17933	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCAAAAGCTTATTACTC	NA	NA	NA	NA	NA	NA	NA	NA	91609278	91823245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91812236_91812297_91817794_91817862_91818512_91818584_91823176
ONT_simulated_read_14464430	chr1	+	1040	8	ISM	ENSMUSG00000026150.15	ENSMUST00000162003.8	2087	11	0	10510	0	-9866	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTCTGCCCGTGGCAT	NA	NA	NA	NA	NA	NA	NA	NA	82702668	82719605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_82702806_82704948_82705058_82705787_82705960_82706936_82707158_82708833_82709004_82713139_82713229_82714733_82714809_82719538
ONT_simulated_read_1446771	chr18	-	1842	12	ISM	ENSMUSG00000024359.11	ENST00000678051.1	2200	16	4561	-87	4561	87	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	524	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTAGTCTGTCATTGACCT	NA	NA	NA	NA	NA	NA	NA	NA	35081231	35071030	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158
ONT_simulated_read_14468588	chr17	+	1525	1	FSM	ENSMUSG00000117003.2	ENSMUST00000233518.2	2746	1	0	1221	0	-1221	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGTCAAAATCCCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	66756848	66758373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_66756800_66758400
ONT_simulated_read_14469184	chr13	-	735	4	ISM	ENSMUSG00000060176.5	ENST00000334204.6	3466	14	51370	2	51284	-2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAAGACCCCGCCCAAGG	NA	NA	NA	NA	NA	NA	NA	NA	58451392	58438890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_58439004_58440857_58441057_58442697_58442905_58451176
ONT_simulated_read_14469525	chr10	+	762	5	ISM	ENSMUSG00000019978.17	ENST00000525271.5	2405	14	42706	92	-6503	-92	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	172	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGCTCAAATGACAGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	25360178	25398519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_25360279_25364848_25364992_25383674_25383756_25388870_25388984_25398194
ONT_simulated_read_14471290	chr1	-	1495	5	ISM	ENSMUSG00000033159.15	ENSMUST00000190679.7	2062	8	2012	100	2012	-97	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTCTCTTCACAGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	75116323	75112511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202
ONT_simulated_read_14471449	chr11	-	729	1	NIC	ENSMUSG00000041895.16	novel	2050	13	NA	NA	34309	-1263	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGTAGAATGCTTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	109467949	109467220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_109467200_109467900
ONT_simulated_read_1447202	chr2	+	1315	8	ISM	ENSMUSG00000098488.8	ENST00000452633.5	2238	15	3949	0	3949	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTTTAGGCCGGAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	119869347	119872076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_119869567_119869697_119869816_119870109_119870248_119870338_119870444_119870623_119870804_119870958_119871126_119871601_119871789_119871875
ONT_simulated_read_14474819	chr11	-	1115	1	ISM	ENSMUSG00000020315.19	ENST00000615901.4	8516	36	167439	268	97543	-204	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATTTCTCTGTCACTG	NA	NA	NA	NA	NA	NA	NA	NA	30050714	30049599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_30049600_30050700
ONT_simulated_read_14479217	chr16	+	1518	9	ISM	ENSMUSG00000008976.17	ENSMUST00000009120.8	4987	10	0	6271	0	-3807	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGGGGACAACGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	84632011	84654396	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_84632432_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267
ONT_simulated_read_14482357	chr11	-	1437	8	ISM	ENSMUSG00000020387.16	ENST00000402835.5	2761	11	10881	1806	9981	-1674	internal_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCAAGGGCAGCAGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	51737528	51709395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_51709456_51715769_51716235_51717385_51717503_51719092_51719261_51721242_51721455_51722079_51722241_51726399_51726558_51737432
ONT_simulated_read_14482565	chr3	-	1517	2	ISM	ENSMUSG00000032913.14	ENSMUST00000198332.2	3946	18	50214	-438	50186	438	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCCTTCACGAATGTAGC	NA	NA	NA	NA	NA	NA	NA	NA	104368958	104364005	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_104365281_104368716
ONT_simulated_read_14482684	chr5	-	1166	10	ISM	ENSMUSG00000029703.11	ENSMUST00000006301.11	2473	15	3645	507	3645	-507	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTGACCAAGACCATGATA	NA	NA	NA	NA	NA	NA	NA	NA	136161283	136152132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_136152170_136152256_136152367_136152453_136152610_136152720_136152813_136159074_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159
ONT_simulated_read_14485969	chr12	-	158	1	ISM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	48671	526	48450	-225	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACAGTGGAGCAGCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	54793817	54793659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_54793700_54793800
ONT_simulated_read_14487596	chr5	-	1181	7	ISM	ENSMUSG00000029469.15	ENSMUST00000031426.14	2950	19	45478	330	45478	-330	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCGGTGGCCTGCCGTA	NA	NA	NA	NA	NA	NA	NA	NA	122707103	122688596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_122689267_122693559_122693606_122697217_122697304_122697759_122697832_122698721_122698809_122705323_122705414_122706973
ONT_simulated_read_14489211	chr15	+	980	4	ISM	ENSMUSG00000022434.9	ENSMUST00000229203.2	2605	9	10955	596	10955	-596	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCAGTGCTGTCTAGATC	NA	NA	NA	NA	NA	NA	NA	NA	84937897	84946435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_84938058_84939854_84939888_84942942_84943027_84945732
ONT_simulated_read_14489607	chr10	+	469	4	ISM	ENSMUSG00000001785.14	ENSMUST00000001836.11	2572	15	4423	9704	4423	-9704	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAGAAGTGTGGGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	85712117	85715256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_85712248_85712349_85712447_85714342_85714454_85715125
ONT_simulated_read_1449050	chr2	+	135	2	ISM	ENSMUSG00000039943.17	ENST00000414679.6	3933	37	110493	19069	110493	-18667	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGGGGTAAGACTGATG	NA	NA	NA	NA	NA	NA	NA	NA	135829795	135836321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_135829823_135836213
ONT_simulated_read_14492562	chr5	-	1125	9	ISM	ENSMUSG00000004530.13	ENSMUST00000004646.13	3491	11	26600	2911	26600	-2911	internal_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGAGGAGTGGTTTGAGGG	NA	NA	NA	NA	NA	NA	NA	NA	114020219	113983407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018
ONT_simulated_read_14493223	chr19	+	1182	5	NNC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	9604	323	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACAGGGCACAGCCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	6423650	6426865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_+_6423784_6424039_6424314_6424583_6424639_6424748_6424929_6426325
ONT_simulated_read_14494851	chr17	+	526	4	ISM	ENSMUSG00000034709.9	ENST00000281394.8	2887	21	45102	5631	45076	-5631	internal_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAGAACATCAGCAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	88882621	88889917	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_88882713_88884565_88884809_88887862_88887980_88889842
ONT_simulated_read_1449637	chr17	+	1478	7	ISM	ENSMUSG00000073471.4	ENSMUST00000232223.2	2225	8	6935	57	6896	-57	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGGGGTAAAATTGGAGTC	NA	NA	NA	NA	NA	NA	NA	NA	8171380	8198599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_8171466_8188978_8189121_8191655_8191802_8192768_8192973_8194876_8195040_8197549_8197637_8197948
ONT_simulated_read_1449923	chr16	-	837	1	ISM	ENSMUSG00000059003.13	ENSMUST00000199708.5	14634	14	415321	10868	182383	-939	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCACAATGAGAATTTCCG	NA	NA	NA	NA	NA	NA	NA	NA	9397466	9396629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_9396600_9397500
ONT_simulated_read_14501202	chr2	+	589	4	ISM	ENSMUSG00000027168.22	ENST00000639034.2	1794	11	0	12728	0	-12728	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTCTCAGGTCTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	105505777	105510654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_105505995_105506088_105506318_105510154_105510235_105510591
ONT_simulated_read_14501575	chr18	+	2076	6	ISM	ENSMUSG00000041915.10	ENST00000680886.1	4379	7	1713	2175	0	-858	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCAGTGCAAATGTCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	31894856	31914937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_31894944_31904722_31905168_31907689_31907805_31909039_31909131_31911909_31912007_31913696
ONT_simulated_read_14507309	chr5	-	1852	1	NIC	ENSMUSG00000029433.17	novel	1576	6	NA	NA	5576	-154	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTTGTGCACACCTTT	NA	NA	NA	NA	NA	NA	NA	NA	123655871	123654019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_123654000_123655900
ONT_simulated_read_1450994	chr13	+	721	1	FSM	ENSMUSG00000114277.2	ENSMUST00000225897.2	220	1	0	-501	0	501	mono-exon	FALSE	NA	NA	NA	NA	NA	742	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAAAATGTTTGTGAATG	NA	NA	NA	NA	NA	NA	NA	NA	60789603	60790324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_60789600_60790300
ONT_simulated_read_1451133	chr13	-	244	1	ISM	ENSMUSG00000092116.2	ENSMUST00000170205.2	527	2	2180	230	2180	-230	mono-exon	FALSE	NA	NA	NA	NA	NA	228	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTATTTATGCTGCACAT	NA	NA	NA	NA	NA	NA	NA	NA	98626329	98626085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_98626100_98626300
ONT_simulated_read_14512080	chr7	-	210	2	ISM	ENSMUSG00000040907.16	ENST00000602133.5	3482	23	11496	12312	11496	-12312	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGACCGCTGTGCCACCA	NA	NA	NA	NA	NA	NA	NA	NA	24693692	24689906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_24689981_24693556
ONT_simulated_read_14513073	chr12	-	861	6	ISM	ENSMUSG00000021028.9	ENST00000359527.11	1151	7	1800	122	1800	-122	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTATTATTTTGATAGTG	NA	NA	NA	NA	NA	NA	NA	NA	56387342	56375251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_56375585_56377013_56377053_56384087_56384241_56384548_56384615_56386985_56387083_56387169
ONT_simulated_read_14517254	chr12	-	1367	9	ISM	ENSMUSG00000020547.6	ENST00000433922.6	1854	12	32765	94	32765	-94	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTATGTTACAGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	36174038	36141938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933
ONT_simulated_read_14521547	chr14	-	1665	15	ISM	ENSMUSG00000063142.16	ENSMUST00000179097.8	4596	29	274783	65211	-16986	-54890	internal_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGATACTTCGCTTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	23578589	23413972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_23414062_23417506_23417732_23423205_23423330_23436327_23436422_23486017_23486095_23492060_23492148_23501666_23501736_23513168_23513279_23544606_23544763_23551192_23551263_23555241_23555325_23558104_23558211_23559857_23559969_23576792_23576885_23578417
ONT_simulated_read_14522357	chr11	-	459	1	ISM	ENSMUSG00000020422.15	ENSMUST00000239091.2	7897	31	173425	19352	149132	-19352	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTCGGAGGGTGATCGTT	NA	NA	NA	NA	NA	NA	NA	NA	8401462	8401003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_8401000_8401500
ONT_simulated_read_14525596	chr1	-	1159	5	ISM	ENSMUSG00000025993.11	ENSMUST00000027137.11	3370	8	4282	2938	4282	-2938	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTACAACAGAAATGCATATG	NA	NA	NA	NA	NA	NA	NA	NA	45960460	45950165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_45950691_45951395_45951642_45957468_45957596_45958044_45958161_45960315
ONT_simulated_read_14529147	chrX	-	974	1	ISM	ENSMUSG00000073139.10	ENSMUST00000101506.10	2429	6	15888	566	15888	-566	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCAGATGCCCCACCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	69504898	69503924	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_69503900_69504900
ONT_simulated_read_14530413	chr7	-	1747	1	ISM	ENSMUSG00000035354.10	ENSMUST00000037968.10	5157	15	252573	1801	252573	-1801	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCTCTTAAAAGAAAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	98537775	98536028	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_98536000_98537800
ONT_simulated_read_1453183	chr2	+	1318	9	ISM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	0	23846	0	-23846	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGGTGACAGCCGTTAC	NA	NA	NA	NA	NA	NA	NA	NA	157120978	157144393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325
ONT_simulated_read_14531979	chr5	+	954	5	ISM	ENSMUSG00000029234.14	ENSMUST00000031144.14	1897	6	15565	370	15565	-370	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAGCATGACCCCCTTAT	NA	NA	NA	NA	NA	NA	NA	NA	76347291	76356722	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_76347418_76351953_76352130_76352483_76352664_76355648_76355755_76356356
ONT_simulated_read_14532535	chr4	-	973	1	ISM	ENSMUSG00000028833.14	ENSMUST00000030637.14	3681	7	8154	533	8154	448	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTTCCAGGGCAATTTG	NA	NA	NA	NA	NA	NA	NA	NA	126639048	126638075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126638100_126639000
ONT_simulated_read_14532625	chr3	+	822	5	ISM	ENSMUSG00000068823.11	ENSMUST00000029446.13	4318	20	194	17707	0	-16670	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTGCCCCGGGTCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	102927935	102947795	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756
ONT_simulated_read_1453326	chr5	-	949	6	ISM	ENSMUSG00000023348.12	ENSMUST00000024119.11	2168	9	1340	495	1126	-495	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGAGTGTCAAGGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	137311326	137308410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137308437_137308546_137308668_137308914_137309094_137310135_137310306_137310401_137310496_137310967
ONT_simulated_read_14534793	chr13	+	2073	2	ISM	ENSMUSG00000039087.18	ENST00000611109.1	3551	3	15790	55	15790	-55	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	467	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCTACTGTACTCAGACA	NA	NA	NA	NA	NA	NA	NA	NA	38130991	38134043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_38131640_38132618
ONT_simulated_read_14535349	chr7	-	1137	6	ISM	ENSMUSG00000037032.17	ENSMUST00000081165.14	2530	13	0	8179	0	-7847	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACCGAGGAGGAGCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	105223609	105215871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105222888
ONT_simulated_read_14536045	chr6	-	1264	1	ISM	ENSMUSG00000055027.18	ENSMUST00000074301.10	3361	10	46386	692	46337	-690	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCCCACTAAACTGCAAT	NA	NA	NA	NA	NA	NA	NA	NA	71192879	71191615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_71191600_71192900
ONT_simulated_read_14536791	chr10	-	2453	1	ISM	ENSMUSG00000025352.7	ENSMUST00000026408.7	4062	3	6239	732	6239	-732	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCCTCTCTGGCCATTC	NA	NA	NA	NA	NA	NA	NA	NA	128721348	128718895	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128718900_128721300
ONT_simulated_read_14539033	chr11	-	1114	1	NIC	ENSMUSG00000020863.16	novel	5244	12	NA	NA	28697	-1009	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGTTACATTCAGTGCAA	NA	NA	NA	NA	NA	NA	NA	NA	94184087	94182973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_94183000_94184100
ONT_simulated_read_14540420	chr15	-	297	1	ISM	ENSMUSG00000101892.2	ENSMUST00000100655.5	1341	6	11760	0	11760	0	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTTCAGCTGCTCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	57885951	57885654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_57885700_57886000
ONT_simulated_read_1454348	chr12	+	565	4	ISM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	0	4094	0	-1069	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCTTGCACACTGGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	100165693	100171979	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871
ONT_simulated_read_14543980	chr1	+	942	10	ISM	ENSMUSG00000064302.14	ENST00000455322.6	5131	39	120782	59432	28198	-59201	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGATGACTTGCAAGACT	NA	NA	NA	NA	NA	NA	NA	NA	118437966	118475641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_118438107_118440434_118440459_118449556_118449665_118451050_118451078_118453026_118453186_118466995_118467100_118469404_118469429_118470831_118471077_118473122_118473187_118475594
ONT_simulated_read_14544021	chr11	-	507	1	ISM	ENSMUSG00000020910.17	ENSMUST00000116363.2	1283	5	10488	3535	10488	-3535	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTGGGCATAGACCCAT	NA	NA	NA	NA	NA	NA	NA	NA	66932908	66932401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_66932400_66932900
ONT_simulated_read_14544970	chr16	-	2589	2	ISM	ENSMUSG00000047714.15	ENSMUST00000060188.14	4078	6	16788	761	16503	-761	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGCCTGAGAGTAATTGGA	NA	NA	NA	NA	NA	NA	NA	NA	31077307	31071115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_31073552_31077154
ONT_simulated_read_14546924	chrX	-	1135	7	ISM	ENSMUSG00000067878.14	ENSMUST00000114766.8	2891	16	12545	1490	12545	-1490	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCTTTGCTTCTGTCTA	NA	NA	NA	NA	NA	NA	NA	NA	55855141	55844707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_55845030_55846362_55846553_55847120_55847203_55849725_55849831_55850759_55850905_55853203_55853331_55854977
ONT_simulated_read_14550574	chr18	+	934	1	ISM	ENSMUSG00000103677.2	ENSMUST00000194418.2	4727	4	1674	154056	1674	-154056	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGACTCACTCCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	37819936	37820870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_37819900_37820900
ONT_simulated_read_14553757	chr18	+	2116	1	ISM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	23623	3546	23530	1643	mono-exon	FALSE	NA	NA	NA	NA	NA	274	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTATTTATTGATTTATT	NA	NA	NA	NA	NA	NA	NA	NA	6788767	6790883	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_6788800_6790900
ONT_simulated_read_1455525	chr12	+	1926	1	ISM	ENSMUSG00000035614.12	ENST00000361462.7	6435	20	316	54589	116	-54589	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAAACCAGACCTCCAAT	NA	NA	NA	NA	NA	NA	NA	NA	65012829	65014755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_65012800_65014800
ONT_simulated_read_14556360	chr16	-	448	4	ISM	ENSMUSG00000022913.17	ENSMUST00000023630.16	1044	7	2853	2268	2783	-2164	internal_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATCTGTGCTACACTGA	NA	NA	NA	NA	NA	NA	NA	NA	95789307	95783400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_95783439_95784992_95785192_95788492_95788556_95789159
ONT_simulated_read_14559632	chr19	-	1285	10	ISM	ENSMUSG00000024941.10	ENST00000525364.5	2572	16	1588	1308	1588	-1308	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACAAGGACACTGCAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	5819840	5809762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748
ONT_simulated_read_1455980	chr19	-	902	6	ISM	ENSMUSG00000036748.17	ENSMUST00000236046.2	1167	10	6799	-130	6799	126	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTGGGACAGGGGATTTCA	NA	NA	NA	NA	NA	NA	NA	NA	46320248	46318852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195
ONT_simulated_read_14561097	chrX	-	555	4	ISM	ENSMUSG00000067567.13	ENST00000647980.1	1658	11	99466	261	26918	-261	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGGCCTAAGGGGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	101449287	101328565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_101328775_101351244_101351351_101446190_101446286_101449142
ONT_simulated_read_14562803	chr17	+	305	1	ISM	ENSMUSG00000039770.7	ENSMUST00000045174.7	3120	3	0	14438	0	-12077	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTGCTGGCAGCGCCGA	NA	NA	NA	NA	NA	NA	NA	NA	73143447	73143752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_73143400_73143800
ONT_simulated_read_14563627	chr18	-	106	1	ISM	ENSMUSG00000041923.16	ENSMUST00000081423.13	3309	11	215111	130059	215111	-128905	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCACTGAACCTGAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	22956602	22956496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_22956500_22956600
ONT_simulated_read_14566878	chr1	+	796	7	ISM	ENSMUSG00000058729.14	ENST00000481685.1	1541	13	20218	7201	20218	-7201	internal_fragment	FALSE	canonical	NA	NA	NA	NA	812	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAGGACCTGAACAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	180489041	180508739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664
ONT_simulated_read_1456700	chr4	-	230	1	NIC	ENSMUSG00000028345.16	novel	2848	14	NA	NA	38982	0	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGCTTCCTTCATACAG	NA	NA	NA	NA	NA	NA	NA	NA	48431084	48430854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_48430900_48431100
ONT_simulated_read_14568563	chrX	-	1848	8	ISM	ENSMUSG00000031229.17	ENSMUST00000113573.8	10275	35	29416	78744	28590	5596	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGTGATCATGAAAACAATG	NA	NA	NA	NA	NA	NA	NA	NA	104943593	104919964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486
ONT_simulated_read_14569402	chr16	+	1966	1	NIC	ENSMUSG00000046516.11	novel	444	3	NA	NA	2218	-1539	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACGGCATAAGTATTATTC	NA	NA	NA	NA	NA	NA	NA	NA	38169601	38171567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_+_38169600_38171600
ONT_simulated_read_14569464	chr11	+	650	3	ISM	ENSMUSG00000039275.10	ENSMUST00000106113.2	5029	9	38526	3029	38526	-3029	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGCGAGTTAAAGCAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	121189341	121197693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_121189682_121190409_121190620_121197593
ONT_simulated_read_14569679	chr11	+	723	6	ISM	ENSMUSG00000034940.16	ENSMUST00000183714.8	3651	21	25335	32213	25335	-32213	internal_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACTTTCCCATCAGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	83880636	83899541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_83880703_83881520_83881770_83885154_83885289_83892683_83892797_83892998_83893062_83899443
ONT_simulated_read_14573493	chrX	-	1565	12	ISM	ENSMUSG00000025266.12	ENST00000360845.3	1934	16	14927	0	1353	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAGCTGACCTTCCCCCT	NA	NA	NA	NA	NA	NA	NA	NA	149785287	149769101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169
ONT_simulated_read_14578172	chr4	-	245	1	ISM	ENSMUSG00000028693.16	ENSMUST00000030457.12	2118	14	25722	479	25703	78	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTTTGCTATTGCACA	NA	NA	NA	NA	NA	NA	NA	NA	116458972	116458727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_116458700_116459000
ONT_simulated_read_14578935	chr3	+	297	1	ISM	ENSMUSG00000025757.14	ENSMUST00000204702.3	9479	19	0	50380	0	-43861	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCGAGGAGCGGCGGCATC	NA	NA	NA	NA	NA	NA	NA	NA	40699861	40700158	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_40699900_40700200
ONT_simulated_read_14579534	chr6	+	1783	11	ISM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	15	25587	15	-25581	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGTTCTTTGTGAAATG	NA	NA	NA	NA	NA	NA	NA	NA	125073139	125081967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077740_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079394_125079574_125079755_125079996_125081829
ONT_simulated_read_1458058	chr7	+	530	4	ISM	ENSMUSG00000030523.19	ENSMUST00000206706.2	2350	10	17478	9753	3902	-9753	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAACTCGTGAGTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	63852809	63858730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_63852879_63854169_63854342_63858023_63858199_63858616
ONT_simulated_read_14580939	chr7	-	464	3	ISM	ENSMUSG00000007837.12	ENSMUST00000210500.2	922	7	4814	0	4808	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGACCCCCCCCCACACT	NA	NA	NA	NA	NA	NA	NA	NA	44706268	44703388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44703622_44703942_44704072_44706166
ONT_simulated_read_14581193	chr4	-	676	1	ISM	ENSMUSG00000040520.8	ENSMUST00000041374.8	4867	5	18583	3127	12689	0	mono-exon	FALSE	NA	NA	NA	NA	NA	571	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACGTCTACTAGCTTAAGT	NA	NA	NA	NA	NA	NA	NA	NA	26328308	26327632	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_26327600_26328300
ONT_simulated_read_14581920	chr5	-	843	7	ISM	ENSMUSG00000066900.12	ENSMUST00000086471.12	2425	12	10724	1000	10724	-243	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTCCTTGAATTCCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	117243339	117230744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_117231097_117232974_117233060_117236335_117236442_117237365_117237388_117237541_117237604_117238664_117238761_117243219
ONT_simulated_read_14586474	chr8	+	416	1	FSM	ENSMUSG00000068631.9	ENSMUST00000084055.9	319	1	0	-97	0	97	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTAGTCCTGACCATTT	NA	NA	NA	NA	NA	NA	NA	NA	13946310	13946726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_13946300_13946700
ONT_simulated_read_14586921	chr11	+	251	1	ISM	ENSMUSG00000059278.10	ENSMUST00000144531.2	671	3	51	732	51	-726	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCAGAGCAGCTCCAGCGC	NA	NA	NA	NA	NA	NA	NA	NA	69286523	69286774	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_69286500_69286800
ONT_simulated_read_14590465	chr10	-	1076	6	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	48615	12521	48615	-12521	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTGAGCCACCACACACA	NA	NA	NA	NA	NA	NA	NA	NA	75551535	75494466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_75494632_75520125_75520240_75530548_75530881_75535746_75535930_75549286_75549466_75551432
ONT_simulated_read_14591226	chr2	+	1826	1	ISM	ENSMUSG00000039844.21	ENSMUST00000095087.11	6241	26	118615	193	94520	-193	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCCATTACCTGTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	29628346	29630172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_29628300_29630200
ONT_simulated_read_14592768	chr8	-	262	1	NIC	ENSMUSG00000031665.8	novel	5265	4	NA	NA	13608	-183	mono-exon	FALSE	NA	NA	NA	NA	NA	185	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGGGCAGTGGGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	89755447	89755185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_89755200_89755400
ONT_simulated_read_14593569	chr19	-	1637	9	ISM	ENSMUSG00000041360.9	ENSMUST00000076219.6	3471	18	10952	837	10952	-837	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTAAAAGGGGGAACTGT	NA	NA	NA	NA	NA	NA	NA	NA	27396273	27366934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194
ONT_simulated_read_1459499	chr8	-	1247	9	ISM	ENSMUSG00000057672.17	ENSMUST00000144258.8	2995	22	2859	7693	1737	-7680	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACTCATCCCTAGTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	84417830	84404412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_84404477_84404559_84404636_84407582_84407727_84407808_84407919_84410027_84410223_84410631_84410846_84411264_84411411_84413668_84413814_84417677
ONT_simulated_read_14597035	chr2	-	559	4	ISM	ENSMUSG00000089917.8	ENST00000358711.7	1880	13	8588	997	8588	-997	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAAAGTGCTACGCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	181215177	181211951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_181211989_181212101_181212392_181214866_181214929_181215007
ONT_simulated_read_14600050	chr16	-	336	1	ISM	ENSMUSG00000022542.8	ENSMUST00000170323.3	2576	8	10193	466	8956	0	mono-exon	FALSE	NA	NA	NA	NA	NA	263	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGAGTCCTCTGAGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	4805523	4805187	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4805200_4805500
ONT_simulated_read_14605271	chr1	+	2099	12	ISM	ENSMUSG00000032883.16	ENSMUST00000134566.8	2492	14	32380	0	32380	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	134	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATTTGTTGCTGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	78667979	78684618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
ONT_simulated_read_1460540	chr12	-	2809	8	ISM	ENSMUSG00000041645.15	ENSMUST00000110001.4	3063	9	1182	0	1182	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCTGAGGGTGTTGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	103390857	103374241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130
ONT_simulated_read_14609063	chr14	-	327	2	ISM	ENSMUSG00000022193.8	ENSMUST00000022803.6	899	3	1237	307	1212	-248	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCTGGCTCCGTGTATGC	NA	NA	NA	NA	NA	NA	NA	NA	54854242	54851882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_54851939_54853971
ONT_simulated_read_14610495	chr3	-	180	1	ISM	ENSMUSG00000038550.11	ENSMUST00000159739.8	1939	5	3060	463	3060	-461	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTCCGCCTCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	95786457	95786277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95786300_95786500
ONT_simulated_read_14610969	chr3	-	407	1	ISM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	29039	1114	28922	-1114	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAACCTGCACTCACTGC	NA	NA	NA	NA	NA	NA	NA	NA	138166237	138165830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_138165800_138166200
ONT_simulated_read_14611099	chr16	-	1023	9	ISM	ENSMUSG00000037965.16	ENSMUST00000037633.16	3825	23	11711	16572	11711	-16572	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTATCCTGAGCCCTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	10982546	10971027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455
ONT_simulated_read_14612729	chr2	-	1277	1	ISM	ENSMUSG00000009207.16	ENSMUST00000111993.9	3321	14	56671	710	55946	-667	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAGACTAGTTATTCT	NA	NA	NA	NA	NA	NA	NA	NA	74352621	74351344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_74351300_74352600
ONT_simulated_read_14613953	chr17	-	741	1	ISM	ENSMUSG00000060475.14	ENSMUST00000159986.8	3187	6	17100	1667	17100	-800	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGGGGGAATGTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	13193979	13193238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_13193200_13194000
ONT_simulated_read_14615578	chr6	-	1208	1	ISM	ENSMUSG00000107478.2	ENSMUST00000129411.7	4359	13	8059	7566	8059	-7566	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGCAGTAACTCCCATC	NA	NA	NA	NA	NA	NA	NA	NA	124724925	124723717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124723700_124724900
ONT_simulated_read_146162	chr11	+	637	5	ISM	ENSMUSG00000018882.13	ENSMUST00000019026.10	2431	8	0	4194	0	-4194	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATACCTTGGTAACCGAAC	NA	NA	NA	NA	NA	NA	NA	NA	97206541	97216552	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534
ONT_simulated_read_14622570	chr4	-	345	1	ISM	ENSMUSG00000028772.20	ENSMUST00000134159.3	2113	8	43149	1067	32529	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	375	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCATTCATGCGCTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	130210587	130210242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_130210200_130210600
ONT_simulated_read_14623062	chr5	+	2160	18	FSM	ENSMUSG00000029227.16	ENST00000358575.9	2115	18	-45	0	20	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCTAAGAAAGTAATGTGA	NA	NA	NA	NA	NA	NA	NA	NA	74696163	74756860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_74696423_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ONT_simulated_read_14623077	chr5	-	288	1	ISM	ENSMUSG00000048450.11	ENSMUST00000063116.10	1935	2	51	3760	51	-3760	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCCCCCGGGGCTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	37981876	37981588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_37981600_37981900
ONT_simulated_read_14624852	chr7	+	1371	10	NNC	ENSMUSG00000003549.10	novel	1375	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGGCTCTGCGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	19078702	19090449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086557_19086631_19088250_19088351_19089025_19089098_19089217_19089287_19090343
ONT_simulated_read_14626883	chr11	-	688	5	ISM	ENSMUSG00000020388.13	ENSMUST00000018755.10	1182	7	9003	162	8921	-142	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGGATATGATGTGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	53950837	53945915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_53946066_53946182_53946301_53946615_53946780_53946968_53947151_53950763
ONT_simulated_read_14628455	chr10	-	1308	9	ISM	ENSMUSG00000020238.15	ENSMUST00000020463.14	3118	14	5119	985	5053	-777	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCACCTGACAGTGTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	81327107	81323067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324193_81324261_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003
ONT_simulated_read_14628665	chr7	+	758	6	ISM	ENSMUSG00000030555.17	ENST00000394129.6	1625	10	8169	32603	0	-32554	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCGTTCTATCAAAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	67305194	67328675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_67305318_67312074_67312275_67316910_67317035_67319445_67319597_67319799_67319926_67328641
ONT_simulated_read_14629538	chr11	+	1157	8	ISM	ENSMUSG00000019102.11	ENSMUST00000019246.4	1729	11	0	1307	0	-1307	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCGGTGATGCAGGAGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	61099570	61107940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_61099740_61103052_61103220_61104276_61104509_61105010_61105097_61105375_61105585_61106315_61106434_61107104_61107247_61107906
ONT_simulated_read_14629872	chrX	+	928	4	ISM	ENSMUSG00000025597.14	ENSMUST00000113371.8	3566	11	0	35085	0	-32967	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCAAACTGCCTAGGGAT	NA	NA	NA	NA	NA	NA	NA	NA	113384029	113435441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_113384543_113431311_113431477_113431995_113432133_113435328
ONT_simulated_read_14633210	chr7	-	726	5	ISM	ENSMUSG00000030697.8	ENSMUST00000206570.2	1400	8	4122	291	4122	-291	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCCCCAGCCCCTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	126387390	126385330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288
ONT_simulated_read_14634764	chr7	-	551	5	ISM	ENSMUSG00000030737.18	ENSMUST00000107086.9	3993	14	30877	1741	30877	-51	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1107	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTTAGTTTTGGCCATC	NA	NA	NA	NA	NA	NA	NA	NA	99314139	99309336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_99309384_99310310_99310432_99310724_99310790_99311653_99311818_99313985
ONT_simulated_read_14635828	chr9	+	456	1	ISM	ENSMUSG00000031870.17	ENSMUST00000189181.7	6889	8	635	67688	0	-64215	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGTGTCCCTGCTACCAA	NA	NA	NA	NA	NA	NA	NA	NA	8900468	8900924	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_8900500_8900900
ONT_simulated_read_14637477	chrX	+	1059	9	ISM	ENSMUSG00000031295.14	ENSMUST00000033652.9	4133	33	55353	14416	55322	-14416	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCTCAGGAAGAAAGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	159340782	159359721	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597
ONT_simulated_read_14639064	chr17	-	676	1	ISM	ENSMUSG00000024251.11	ENSMUST00000047524.10	7784	38	273795	1570	273795	-1570	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTTACATGTCTCTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	84499749	84499073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_84499100_84499700
ONT_simulated_read_14640429	chr2	-	733	4	ISM	ENSMUSG00000026922.14	ENSMUST00000028286.12	1489	6	7865	319	7775	34	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAGATGTGGCCATCCAG	NA	NA	NA	NA	NA	NA	NA	NA	26486479	26483387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302
ONT_simulated_read_14641732	chr6	-	533	4	ISM	ENSMUSG00000029817.12	ENSMUST00000204189.3	1777	8	0	5185	0	-5181	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGAAGTGTTTTCTCG	NA	NA	NA	NA	NA	NA	NA	NA	49240944	49226042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_49226109_49227796_49227957_49229315_49229450_49240771
ONT_simulated_read_14644583	chr7	-	1681	14	NNC	ENSMUSG00000038520.16	novel	8750	17	NA	NA	2020	3825	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTCTTGAGATTCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	44496290	44490693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_44490845_44490966_44491054_44491406_44491524_44491626_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495501_44496184
ONT_simulated_read_14645773	chr5	-	762	7	ISM	ENSMUSG00000029472.14	ENSMUST00000197074.5	2413	17	21835	257	21835	-249	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACTTTGCACAAGTCGAC	NA	NA	NA	NA	NA	NA	NA	NA	122937508	122926042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401
ONT_simulated_read_14646576	chr4	-	179	1	ISM	ENSMUSG00000028648.14	ENSMUST00000106207.8	680	2	3438	0	3438	0	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	NA	NA	NA	NA	NA	NA	NA	NA	123606681	123606502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_123606500_123606700
ONT_simulated_read_14649719	chr16	-	756	6	ISM	ENSMUSG00000022537.19	ENSMUST00000140402.8	2405	10	6743	15796	6672	-14691	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATCCAGGTCATCCAGGC	NA	NA	NA	NA	NA	NA	NA	NA	30362653	30348304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_30348389_30356271_30356377_30358206_30358357_30359556_30359728_30362219_30362307_30362494
ONT_simulated_read_14650660	chr10	-	167	3	ISM	ENSMUSG00000019809.17	ENSMUST00000105539.2	1961	12	17345	10651	17063	-10651	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAAAAGAAATCAGAATTC	NA	NA	NA	NA	NA	NA	NA	NA	13411519	13410536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_13410582_13411298_13411354_13411452
ONT_simulated_read_14653454	chr2	-	981	5	ISM	ENSMUSG00000085385.8	ENSMUST00000141809.8	1553	6	481	299	446	159	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTTGAGATAGCTGAACA	NA	NA	NA	NA	NA	NA	NA	NA	158202949	158197525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_158197962_158199117_158199184_158201101_158201353_158202378_158202520_158202862
ONT_simulated_read_14655606	chr19	-	2073	1	ISM	ENSMUSG00000039148.6	ENSMUST00000044207.5	5091	20	8585	523	8585	-523	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGAAAAATGTGGTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	5430146	5428073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5428100_5430100
ONT_simulated_read_1465615	chr4	-	609	1	ISM	ENSMUSG00000045573.10	ENSMUST00000070375.8	1449	2	3994	344	3994	-344	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAGAAAAGATACGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	4134483	4133874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_4133900_4134500
ONT_simulated_read_14657465	chr6	-	143	1	ISM	ENSMUSG00000032899.15	ENSMUST00000049150.8	3380	9	13236	1307	13236	-316	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCAGATGTGGCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	131277554	131277411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_131277400_131277600
ONT_simulated_read_14658473	chr13	+	840	1	ISM	ENSMUSG00000021481.12	ENSMUST00000021937.12	3333	7	27635	1024	27629	-1024	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTCCACTTAAAGAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	55280774	55281614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_55280800_55281600
ONT_simulated_read_14663114	chr5	-	266	1	ISM	ENSMUSG00000029119.10	ENSMUST00000031002.10	3330	19	23467	0	23467	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATGTTCAAGCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	36964530	36964264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_36964300_36964500
ONT_simulated_read_14665074	chr7	-	1602	13	ISM	ENSMUSG00000002968.10	ENSMUST00000208551.2	2678	17	6462	670	6460	-660	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCTCCAGGGGCCCCTA	NA	NA	NA	NA	NA	NA	NA	NA	44535328	44529484	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207
ONT_simulated_read_14667008	chr5	-	1784	9	ISM	ENSMUSG00000025745.13	ENSMUST00000156859.3	4017	20	26228	934	26228	-934	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	136	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTCGGGAGAGTGGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	30333932	30324235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797
ONT_simulated_read_14670321	chr4	-	502	1	FSM	ENSMUSG00000083328.4	ENSMUST00000118781.2	438	1	0	-64	0	64	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCCTTTCTTATTTTGAC	NA	NA	NA	NA	NA	NA	NA	NA	13483192	13482690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_13482700_13483200
ONT_simulated_read_14670773	chr8	+	906	6	ISM	ENSMUSG00000003033.16	ENST00000444449.6	1390	12	12732	-322	12732	-301	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	275	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGGCTGTCCTGTCACC	NA	NA	NA	NA	NA	NA	NA	NA	73006698	73010928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_73006822_73007052_73007125_73007318_73007478_73009540_73009667_73009950_73010027_73010578
ONT_simulated_read_14672726	chr6	-	558	1	ISM	ENSMUSG00000000441.18	ENSMUST00000112949.8	2946	17	56581	257	56581	-236	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCAAGCGCGGTGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	115596344	115595786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_115595800_115596300
ONT_simulated_read_14674467	chr17	-	618	6	ISM	ENSMUSG00000024120.13	ENSMUST00000112308.9	4393	38	41392	21406	24166	-21406	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCGGATGCTGCGTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	85056594	85034080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_85034101_85038572_85038664_85039176_85039246_85047497_85047605_85047971_85048097_85056388
ONT_simulated_read_146749	chr10	+	1377	6	ISM	ENSMUSG00000019923.15	ENSMUST00000020081.11	1834	8	1392	234	1341	-234	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCAGTTTCAAACACGGCA	NA	NA	NA	NA	NA	NA	NA	NA	72492068	72510562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72509797
ONT_simulated_read_14675947	chr11	+	795	1	ISM	ENSMUSG00000020453.18	ENSMUST00000094471.10	2930	3	464	4178	0	-4178	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGCCACAGGTGCTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	3240456	3241251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_3240500_3241300
ONT_simulated_read_14676243	chr10	-	2259	14	ISM	ENSMUSG00000020048.14	ENSMUST00000020238.14	2825	18	3482	0	3482	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	834	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	NA	NA	NA	NA	NA	NA	NA	86537891	86526703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560
ONT_simulated_read_14678690	chr7	-	537	5	ISM	ENSMUSG00000019539.12	ENSMUST00000211352.2	1453	7	767	767	767	-767	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACGGGCGACTGGA	NA	NA	NA	NA	NA	NA	NA	NA	44740878	44733103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864
ONT_simulated_read_14679389	chr9	+	1249	11	ISM	ENSMUSG00000062867.14	ENST00000678724.1	1673	14	23	660	23	-660	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTTCTCAGATGGGATC	NA	NA	NA	NA	NA	NA	NA	NA	108437678	108442112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108437831_108438232_108438282_108438795_108438898_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441111_108441184_108441833_108441978_108442064
ONT_simulated_read_14683426	chr6	+	519	2	ISM	ENSMUSG00000064080.13	ENSMUST00000113498.9	4644	17	376	39028	376	-38372	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGGCCATACCGTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	91189812	91210493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_91189883_91210044
ONT_simulated_read_14684576	chr5	-	1993	14	ISM	ENSMUSG00000041890.18	ENSMUST00000086564.11	2984	20	11771	295	11743	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAAACATTTTCTTAAGA	NA	NA	NA	NA	NA	NA	NA	NA	114899752	114867930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633
ONT_simulated_read_14685179	chr17	-	773	5	ISM	ENSMUSG00000025735.14	ENST00000352681.8	1416	9	1239	240	1192	-103	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTTCCCCACAGGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	26054864	26053678	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_26054031_26054110_26054172_26054250_26054352_26054443_26054557_26054718
ONT_simulated_read_14685617	chrM	+	984	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	840	0	-840	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTACCCACGCATTCTT	NA	NA	NA	NA	NA	NA	NA	NA	11741	12725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrM_+_11700_12700
ONT_simulated_read_14685718	chr10	-	1087	1	ISM	ENSMUSG00000075266.6	ENSMUST00000216853.2	4143	2	3295	1542	3295	-102	mono-exon	FALSE	NA	NA	NA	NA	NA	204	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCTAGGAAAAATGCCTA	NA	NA	NA	NA	NA	NA	NA	NA	30073193	30072106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_30072100_30073200
ONT_simulated_read_14691163	chr14	-	2137	12	ISM	ENSMUSG00000022185.20	ENSMUST00000022793.15	4735	19	24687	227	-8543	-221	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTGGGGACAGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	54899701	54879844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54899624
ONT_simulated_read_14691712	chr8	+	2922	14	ISM	ENSMUSG00000036879.16	ENSMUST00000053771.14	5351	32	176430	562	141800	-562	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATCTAAAGCCTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	86744060	86787443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
ONT_simulated_read_14691994	chr16	+	689	7	ISM	ENSMUSG00000022770.18	ENST00000667971.1	3518	23	171453	14576	81487	-13736	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGAGCAGTGGCAGAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	31655087	31676863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_31655123_31656867_31657045_31661587_31661658_31665651_31665752_31675258_31675310_31676364_31676467_31676709
ONT_simulated_read_14692424	chr12	-	1168	7	ISM	ENSMUSG00000021224.16	ENST00000559312.5	1413	8	13120	206	0	-203	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGCAGCTTTCAATGGT	NA	NA	NA	NA	NA	NA	NA	NA	83889117	83842415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_83842929_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991
ONT_simulated_read_14692845	chr17	-	371	2	ISM	ENSMUSG00000059409.10	ENSMUST00000002839.9	2926	15	20647	860	20647	-860	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCGGGATGCCCAGAGCG	NA	NA	NA	NA	NA	NA	NA	NA	46995281	46994776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_46995053_46995186
ONT_simulated_read_14693163	chr4	-	1134	1	ISM	ENSMUSG00000036002.13	ENSMUST00000107958.8	3280	9	6630	111	6630	-111	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTGCTGAAACTTGAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	43033658	43032524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_43032500_43033700
ONT_simulated_read_1469368	chr13	-	1514	1	Genic_Genomic	ENSMUSG00000046573.8	novel	NA	NA	NA	NA	137619	1	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACCCAGCTAAACTGGACA	NA	NA	NA	NA	NA	NA	NA	NA	36163890	36162376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr13_-_36162400_36163900
ONT_simulated_read_14696077	chr1	-	985	3	ISM	ENSMUSG00000026021.16	ENSMUST00000091374.9	1215	5	26240	0	10941	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGCTCCTTTTATTTTA	NA	NA	NA	NA	NA	NA	NA	NA	59683753	59678592	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_59679428_59681576_59681649_59683675
ONT_simulated_read_14699668	chr4	-	351	4	ISM	ENSMUSG00000028649.22	ENSMUST00000106220.9	17608	92	15560	161047	15560	-161045	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAGTCAGATGTCATTA	NA	NA	NA	NA	NA	NA	NA	NA	123405692	123404557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_123404593_123404738_123404833_123404910_123405039_123405598
ONT_simulated_read_14700141	chr7	-	1124	10	ISM	ENSMUSG00000003438.18	ENSMUST00000081946.5	1515	11	1067	229	1043	6	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	255	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGGGCTGGGTGCCATG	NA	NA	NA	NA	NA	NA	NA	NA	28010430	28005169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293
ONT_simulated_read_14701960	chr14	-	1055	3	ISM	ENSMUSG00000022120.5	ENSMUST00000022716.4	3420	6	16326	2010	16326	-2010	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGCTCCACAAGCTAT	NA	NA	NA	NA	NA	NA	NA	NA	104743742	104716981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_104717734_104740782_104740872_104743528
ONT_simulated_read_14702000	chr1	-	359	1	ISM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	99	13069	99	-13069	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGGAGGTCCCTGGCGAG	NA	NA	NA	NA	NA	NA	NA	NA	10108253	10107894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_10107900_10108300
ONT_simulated_read_14711722	chr1	+	411	2	ISM	ENSMUSG00000026604.18	ENSMUST00000027898.7	2666	18	0	71423	0	-71423	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAATGTGTCACGGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	189518868	189530842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_189519146_189530708
ONT_simulated_read_14713844	chr12	-	627	4	ISM	ENSMUSG00000002020.16	ENSMUST00000163189.8	6470	35	89995	1965	89995	-1965	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCAGCCAGCCGGGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	84833258	84832067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_84832260_84832501_84832670_84832747_84832886_84833129
ONT_simulated_read_1471585	chr10	-	772	8	ISM	ENSMUSG00000019467.16	ENSMUST00000218654.2	2475	15	1449	2402	1449	-2209	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAGTGCAGCGAATCATG	NA	NA	NA	NA	NA	NA	NA	NA	127023192	127020796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_127020849_127020951_127021042_127021155_127021226_127021443_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976
ONT_simulated_read_14717265	chr17	-	396	3	ISM	ENSMUSG00000023883.14	ENSMUST00000024657.12	1663	12	10557	1249	10557	-1249	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTGTGTGACAGAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	15170978	15166519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_15166650_15166916_15167026_15170821
ONT_simulated_read_147196	chr4	+	1306	9	ISM	ENSMUSG00000074088.7	ENSMUST00000105994.4	1584	10	2495	61	2495	-61	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTCGGTGTTTGAGTC	NA	NA	NA	NA	NA	NA	NA	NA	130256419	130283758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_130256551_130258867_130258962_130261981_130262148_130271838_130271962_130277186_130277308_130278274_130278358_130279746_130279809_130282367_130282472_130283336
ONT_simulated_read_14719942	chr11	-	1030	5	ISM	ENSMUSG00000042148.9	ENSMUST00000049091.9	2915	7	7651	1599	7648	-1599	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTCTGCAGCCTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	63962641	63855051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_63855355_63867069_63867303_63884711_63884783_63936052_63936178_63962343
ONT_simulated_read_1472271	chr7	-	873	6	ISM	ENSMUSG00000038650.16	ENSMUST00000210314.2	1658	10	5165	222	5165	-220	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAAATGAGGTGGAAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	140743437	140740460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266
ONT_simulated_read_14723354	chr11	-	336	1	NIC	ENSMUSG00000018476.8	novel	6654	23	NA	NA	13825	-1002	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCACATACGGGTTCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	69290676	69290340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_69290300_69290700
ONT_simulated_read_14723614	chr8	-	2490	5	ISM	ENSMUSG00000038506.14	ENSMUST00000045366.10	2748	7	9158	1	9150	-1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGTGATGTCCTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	13328683	13305964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_13307977_13308946_13309044_13311384_13311468_13321589_13321721_13328516
ONT_simulated_read_14723947	chr17	+	1403	12	ISM	ENSMUSG00000002365.11	ENST00000681186.1	2472	18	16	10519	16	-10519	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCATGGATGACGGCGTGA	NA	NA	NA	NA	NA	NA	NA	NA	5891626	5970880	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_5891822_5937271_5937359_5940349_5940425_5942048_5942175_5949601_5949771_5952638_5952790_5955163_5955249_5958628_5958755_5958856_5958975_5968654_5968786_5970345_5970450_5970844
ONT_simulated_read_1472444	chr4	-	671	4	ISM	ENSMUSG00000028447.12	ENSMUST00000171641.2	885	6	3240	0	3209	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACAGTGGGGCATTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	41719923	41714797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_41715239_41716395_41716455_41717356_41717441_41719836
ONT_simulated_read_14726650	chr2	-	1489	14	ISM	ENSMUSG00000027620.17	ENSMUST00000109587.9	2810	17	7216	855	6558	-559	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGGAAGATACAGTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	156014942	155990013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747
ONT_simulated_read_14733441	chr5	-	1852	1	NIC	ENSMUSG00000029433.17	novel	1576	6	NA	NA	5332	63	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTGGTTTACCCTGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	123656115	123654263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_123654300_123656100
ONT_simulated_read_14735608	chr6	-	3861	1	ISM	ENSMUSG00000001156.10	ENSMUST00000001184.10	4666	6	18116	143	18116	-143	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGACTGGAGAATGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	86628027	86624166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_86624200_86628000
ONT_simulated_read_14735996	chr7	-	436	1	FSM	ENSMUSG00000086583.4	ENSMUST00000071523.5	894	1	0	458	0	-458	mono-exon	FALSE	NA	NA	NA	NA	NA	510	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATGCAGGTCTTGCCCGA	NA	NA	NA	NA	NA	NA	NA	NA	114305398	114304962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_114305000_114305400
ONT_simulated_read_14737147	chr9	-	1064	1	ISM	ENSMUSG00000032119.6	ENSMUST00000216508.2	5333	10	9097	3071	9097	-3071	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGGAAGGAAGCTCCAT	NA	NA	NA	NA	NA	NA	NA	NA	44207871	44206807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44206800_44207900
ONT_simulated_read_14737815	chr2	-	2968	1	ISM	ENSMUSG00000026918.17	ENSMUST00000028282.15	5419	12	26831	21	15549	0	mono-exon	FALSE	NA	NA	NA	NA	NA	245	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAATAAAAAGGGAAAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	27338579	27335611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_27335600_27338600
ONT_simulated_read_14738458	chr3	-	1390	1	NIC	ENSMUSG00000028020.17	novel	3029	10	NA	NA	66831	61	mono-exon	FALSE	NA	NA	NA	NA	NA	448	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGTCTAGATATTGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	80752565	80751175	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_80751200_80752600
ONT_simulated_read_14740204	chr11	-	432	1	FSM	ENSMUSG00000082530.2	ENSMUST00000119051.2	368	1	0	-64	0	64	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTAATGATTTGTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	46342174	46341742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_46341700_46342200
ONT_simulated_read_14743784	chr2	-	1584	11	ISM	ENSMUSG00000055371.18	ENSMUST00000102759.8	4717	14	22421	2816	22421	-2816	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTTCTGGGCCCTTACT	NA	NA	NA	NA	NA	NA	NA	NA	52609791	52584491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_52584950_52590016_52590184_52593113_52593265_52596410_52596466_52597929_52598018_52598154_52598238_52599607_52599703_52604829_52605017_52605699_52605770_52606436_52606584_52609708
ONT_simulated_read_14743885	chr1	-	1043	3	ISM	ENSMUSG00000033845.14	ENSMUST00000146665.3	1569	4	1633	360	1604	-360	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTACTCAAAACTGGAACT	NA	NA	NA	NA	NA	NA	NA	NA	4854329	4851803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_4852525_4852790_4852957_4854173
ONT_simulated_read_14744536	chr8	-	339	1	NIC	ENSMUSG00000052934.15	novel	4358	9	NA	NA	26360	-2668	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTGTGTAACATACTCTT	NA	NA	NA	NA	NA	NA	NA	NA	122279185	122278846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_122278800_122279200
ONT_simulated_read_14744576	chr6	-	1211	1	ISM	ENSMUSG00000038648.6	ENSMUST00000041093.6	7082	12	109646	4035	109646	-4035	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTTGGTCATTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	37309435	37308224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_37308200_37309400
ONT_simulated_read_14744936	chr5	+	969	7	ISM	ENSMUSG00000029004.16	ENSMUST00000115128.8	7317	27	44106	11912	44106	-11912	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAGAGAAAAGACGAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	23683552	23697321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344_23690610_23691299_23691399_23697265
ONT_simulated_read_14749269	chr16	-	496	1	NIC	ENSMUSG00000116925.2	novel	608	5	NA	NA	2715	-9896	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTATGGTTCTTTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	18073470	18072974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_18073000_18073500
ONT_simulated_read_1474948	chr5	+	1857	10	ISM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	10440	0	10440	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATAAGGTTTATTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	64260732	64285694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
ONT_simulated_read_14753561	chr14	-	1187	1	FSM	ENSMUSG00000115801.2	ENSMUST00000226445.2	93147	1	54030	37930	54030	-37930	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGTCAGATGAATAACCTT	NA	NA	NA	NA	NA	NA	NA	NA	44820628	44819441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_44819400_44820600
ONT_simulated_read_14754265	chr2	-	3025	4	ISM	ENSMUSG00000057133.15	ENSMUST00000039782.14	10515	37	148637	906	148637	-906	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATCTCAAAGAAGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	160802305	160789803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_160792108_160798002_160798123_160798955_160799148_160801896
ONT_simulated_read_14755653	chr10	+	1691	1	ISM	ENSMUSG00000063334.17	ENSMUST00000163048.8	5023	10	12987	1091	12858	-1091	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATAAATGTTCATACATG	NA	NA	NA	NA	NA	NA	NA	NA	111821555	111823246	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_111821600_111823200
ONT_simulated_read_14757246	chr3	-	478	4	ISM	ENSMUSG00000028029.12	ENST00000684504.1	1019	6	2357	6970	2357	-6970	internal_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTGTGCCAGTTCACCA	NA	NA	NA	NA	NA	NA	NA	NA	132380537	132373238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_132373315_132377739_132377949_132379725_132379891_132380509
ONT_simulated_read_14761043	chr1	-	1751	12	ISM	ENSMUSG00000041303.8	ENSMUST00000041638.8	4582	18	11443	3148	11443	-3148	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCCCTCCACTTGTGGTC	NA	NA	NA	NA	NA	NA	NA	NA	54466687	54438310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554_54459659_54462659_54462733_54463167_54463316_54466558
ONT_simulated_read_14762242	chr2	-	422	5	ISM	ENSMUSG00000039660.17	ENSMUST00000100220.5	1805	12	1981	1560	1981	-1560	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGCAGTGGATGCTGACC	NA	NA	NA	NA	NA	NA	NA	NA	30066481	30065042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373
ONT_simulated_read_14762264	chr4	-	474	1	ISM	ENSMUSG00000040128.10	ENSMUST00000049357.10	1648	2	2025	589	2025	-589	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGGAAACGGATACAGCA	NA	NA	NA	NA	NA	NA	NA	NA	33246485	33246011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_33246000_33246500
ONT_simulated_read_14763135	chr11	+	581	2	ISM	ENSMUSG00000016940.19	ENSMUST00000103035.10	1764	6	9225	434	9203	-434	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGTTGCTGAAGGACCCA	NA	NA	NA	NA	NA	NA	NA	NA	115320178	115321666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_115320232_115321138
ONT_simulated_read_14764324	chr4	-	414	1	ISM	ENSMUSG00000040025.18	ENSMUST00000152796.8	4129	5	25366	1612	25154	-234	mono-exon	FALSE	NA	NA	NA	NA	NA	363	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCCCCATTTTGACATTT	NA	NA	NA	NA	NA	NA	NA	NA	131914248	131913834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_131913800_131914200
ONT_simulated_read_14765986	chr4	+	754	7	ISM	ENSMUSG00000043411.16	ENSMUST00000105840.8	5741	27	39223	14054	39156	-14054	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAGAATTGAAGATTCA	NA	NA	NA	NA	NA	NA	NA	NA	137360673	137371788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653
ONT_simulated_read_14770405	chr4	+	1484	9	ISM	ENSMUSG00000028405.10	ENSMUST00000102973.4	3832	21	0	19343	0	-19343	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATTCAGAAGTATCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	40143080	40178995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_40143542_40163718_40163846_40164608_40164778_40167053_40167192_40175664_40175735_40175841_40176026_40176495_40176636_40177778_40177951_40178972
ONT_simulated_read_14771084	chr17	+	290	1	ISM	ENSMUSG00000019432.16	ENSMUST00000173731.8	2848	10	0	11521	0	-11517	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCTCGCATCTCCCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	35460845	35461135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35460800_35461100
ONT_simulated_read_14771162	chr7	-	1339	1	ISM	ENSMUSG00000015133.18	ENSMUST00000015277.14	7465	34	128260	7	128260	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGAAAACATGGCCTTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	65909838	65908499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_65908500_65909800
ONT_simulated_read_1477420	chr1	-	1471	1	ISM	ENSMUSG00000026014.16	ENSMUST00000140485.8	10024	14	76470	6547	43097	-539	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCACCCCCTCCACCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	60529468	60527997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_60528000_60529500
ONT_simulated_read_1477602	chr8	-	1201	10	ISM	ENSMUSG00000053693.17	ENST00000591495.5	1372	13	10737	0	2035	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	357	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGCCATCTTTGGGCACCG	NA	NA	NA	NA	NA	NA	NA	NA	85661947	85650357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85650569_85650656_85650743_85651903_85651972_85652037_85652171_85652273_85652376_85655208_85655419_85655578_85655655_85655850_85656012_85657448_85657528_85661872
ONT_simulated_read_14776881	chr3	-	784	1	ISM	ENSMUSG00000038170.16	ENST00000369349.7	4558	23	93931	698	37446	-696	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTTTAATTACATACACC	NA	NA	NA	NA	NA	NA	NA	NA	97637879	97637095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_97637100_97637900
ONT_simulated_read_14777718	chr16	-	207	2	ISM	ENSMUSG00000033581.18	ENST00000440915.1	1399	13	99334	1	99334	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTCCCACAGCACCAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	21880723	21879542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_21879636_21880609
ONT_simulated_read_14777994	chr2	-	1435	14	FSM	ENSMUSG00000027634.15	ENST00000359675.6	1754	14	3	316	3	-316	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCATGTGTGTGCGAGCAC	NA	NA	NA	NA	NA	NA	NA	NA	156812059	156770322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156811956
ONT_simulated_read_14778487	chr10	-	1632	4	ISM	ENSMUSG00000040415.16	ENSMUST00000038217.14	1944	6	1913	64	670	-62	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGAATTGCTGCCAGACT	NA	NA	NA	NA	NA	NA	NA	NA	127029665	127026310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_127026909_127027204_127027423_127028477_127029227_127029598
ONT_simulated_read_1477877	chr8	+	949	8	ISM	ENSMUSG00000060038.15	ENSMUST00000078665.13	1333	9	49	409	49	-384	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTATATCAACACAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	85798434	85801382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_85798683_85799080_85799246_85799923_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362
ONT_simulated_read_14780638	chr4	+	397	1	ISM	ENSMUSG00000028618.12	ENSMUST00000030361.11	1775	8	0	22201	0	-21903	mono-exon	FALSE	NA	NA	NA	NA	NA	229	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGCGCTGGCCGGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	107035595	107035992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_107035600_107036000
ONT_simulated_read_14780903	chr2	-	525	1	ISM	ENSMUSG00000027639.17	ENSMUST00000057725.10	3926	16	35779	1429	22459	-1429	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCCTCGCCATGATGGTG	NA	NA	NA	NA	NA	NA	NA	NA	156941406	156940881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_156940900_156941400
ONT_simulated_read_14781094	chr3	-	1360	1	ISM	ENSMUSG00000086968.9	ENSMUST00000131345.8	5407	3	2708	3296	2187	-675	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGAATTAGGTATCTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	107800821	107799461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_107799500_107800800
ONT_simulated_read_14782006	chr7	-	1769	1	ISM	ENSMUSG00000057342.16	ENSMUST00000107737.11	3548	7	6226	541	3431	259	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTCTGCATCATGACG	NA	NA	NA	NA	NA	NA	NA	NA	45361200	45359431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45359400_45361200
ONT_simulated_read_14786099	chr5	+	1990	14	ISM	ENSMUSG00000042605.17	ENST00000389153.10	3873	24	65934	3990	65888	-3473	internal_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGCCAGCATGGTGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	121915991	121949014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935849_121940143_121940329_121941010_121941144_121944284_121944339_121948913
ONT_simulated_read_14787910	chr16	-	498	4	NIC	ENSMUSG00000022890.14	novel	680	4	NA	NA	498	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTTTAAATTCTTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	84631893	84624753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_84624884_84625312_84625438_84628216_84628396_84631829
ONT_simulated_read_1478949	chr3	-	949	6	ISM	ENSMUSG00000028136.16	ENSMUST00000200642.5	1308	11	42852	-378	42852	362	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGAGCAGAATTTAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	94426487	94408985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_94409373_94409476_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354
ONT_simulated_read_14791170	chr9	-	865	6	ISM	ENSMUSG00000032562.14	ENSMUST00000055704.12	2215	9	15509	898	15454	-898	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGCTTCTCCCATCTTT	NA	NA	NA	NA	NA	NA	NA	NA	107497057	107492221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_107492298_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895
ONT_simulated_read_14791838	chr17	-	995	2	ISM	ENSMUSG00000023832.15	ENSMUST00000159697.2	1800	8	15861	-294	15861	-111	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	267	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGCTTGACGGGATGGG	NA	NA	NA	NA	NA	NA	NA	NA	13163397	13162035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_13162920_13163286
ONT_simulated_read_14793255	chr2	-	1566	1	ISM	ENSMUSG00000027438.15	ENSMUST00000028926.13	4412	11	34990	1927	34990	744	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTAAACCCAGGAATTCC	NA	NA	NA	NA	NA	NA	NA	NA	148539397	148537831	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_148537800_148539400
ONT_simulated_read_14793313	chr7	-	2099	1	ISM	ENSMUSG00000070348.6	ENSMUST00000093962.5	3740	5	7119	721	7026	-721	mono-exon	FALSE	NA	NA	NA	NA	NA	330	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCGCTGTATTCCAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	144486487	144484388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_144484400_144486500
ONT_simulated_read_14795765	chr15	-	207	1	ISM	ENSMUSG00000056258.10	ENSMUST00000070256.9	11824	15	290763	9286	35591	-779	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGGCCCTTACGGGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	65867728	65867521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_65867500_65867700
ONT_simulated_read_14798277	chr11	-	741	3	ISM	ENSMUSG00000020696.19	ENST00000584655.5	1728	5	58397	599	16253	-432	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	280	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAGAGCAGTGCACGTCT	NA	NA	NA	NA	NA	NA	NA	NA	82703604	82696864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_82697016_82700833_82701045_82703225
ONT_simulated_read_14799349	chr1	-	862	8	ISM	ENSMUSG00000003458.13	ENSMUST00000003550.11	2901	17	115	6237	115	-6237	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGGCCCCAGGGGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	171910247	171899816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
ONT_simulated_read_1480247	chr15	+	1259	11	ISM	ENSMUSG00000056851.15	ENSMUST00000229618.2	1576	14	3594	0	913	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	102382681	102407316	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ONT_simulated_read_14804520	chr19	-	549	1	ISM	ENSMUSG00000007338.11	ENSMUST00000007482.8	1764	4	2822	793	2795	-518	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAGTCTCGTTTAAATGGG	NA	NA	NA	NA	NA	NA	NA	NA	6104993	6104444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6104400_6105000
ONT_simulated_read_14805966	chr7	+	1105	1	ISM	ENSMUSG00000089847.9	ENSMUST00000106783.8	3273	3	1127	1350	593	438	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAGTACTTGTGCTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	105290389	105291494	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105290400_105291500
ONT_simulated_read_1480609	chr10	-	1628	5	ISM	ENSMUSG00000019942.14	ENSMUST00000119827.8	1253	9	7741	-776	4980	758	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGTTTACCAGTACCTC	NA	NA	NA	NA	NA	NA	NA	NA	69180992	69173377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890
ONT_simulated_read_14812701	chr2	-	494	3	ISM	ENSMUSG00000027082.16	ENSMUST00000111722.8	1232	8	29648	143	29648	-138	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTCCATTGGTGACCAT	NA	NA	NA	NA	NA	NA	NA	NA	84274480	84263341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_84263529_84264585_84264766_84274353
ONT_simulated_read_14816339	chr11	+	2700	16	ISM	ENSMUSG00000032740.18	ENST00000642200.1	6523	33	96373	3644	96006	2356	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGTCTAGGGAGCAACAAA	NA	NA	NA	NA	NA	NA	NA	NA	29420353	29457161	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_29420457_29427293_29427459_29430489_29430652_29432108_29432387_29432597_29432742_29435824_29436012_29439581_29439728_29443699_29443793_29443878_29444094_29447342_29447427_29448408_29448613_29449334_29449407_29450975_29451057_29453382_29453652_29453851_29454312_29457124
ONT_simulated_read_14822371	chr5	-	314	1	ISM	ENSMUSG00000000149.11	ENSMUST00000000153.9	3416	4	69313	2397	69313	-2397	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGACCTCCTGGTGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	140746873	140746559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_140746600_140746900
ONT_simulated_read_14825619	chr7	-	295	1	ISM	ENSMUSG00000040725.14	ENSMUST00000206832.2	3784	15	32408	890	32339	-215	mono-exon	FALSE	NA	NA	NA	NA	NA	509	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTGAGCTTTTCTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	25421774	25421479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_25421500_25421800
ONT_simulated_read_1482564	chr8	+	588	3	ISM	ENSMUSG00000005481.19	ENSMUST00000109810.2	1794	11	0	3460	0	-3460	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTTGTGCTGGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	84442176	84446517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_84442476_84446015_84446228_84446440
ONT_simulated_read_14825796	chr2	-	1345	8	ISM	ENSMUSG00000013465.20	ENSMUST00000059849.15	2637	13	6273	200	6273	-200	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGATGTCAGTGCTGACTG	NA	NA	NA	NA	NA	NA	NA	NA	25095228	25089923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138
ONT_simulated_read_14826158	chr4	+	1597	5	ISM	ENSMUSG00000028820.14	ENSMUST00000030623.8	3465	10	0	5269	0	-5269	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACATGAAGGATGCTAAA	NA	NA	NA	NA	NA	NA	NA	NA	126915116	126919760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_126916014_126916608_126916798_126917059_126917362_126917466_126917563_126919647
ONT_simulated_read_14826380	chr3	-	1490	9	FSM	ENSMUSG00000028134.12	ENST00000675401.1	2746	9	24	1232	24	-1001	multi-exon	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGAATTAAAATATGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	119541581	119513643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_119514107_119514255_119514334_119514437_119514655_119517742_119517836_119518260_119518295_119519714_119519870_119533963_119534160_119541240_119541352_119541438
ONT_simulated_read_14828882	chr5	-	380	1	NIC	ENSMUSG00000029416.18	novel	2732	8	NA	NA	20643	-730	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTCTCACTGAAGGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	127673837	127673457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_127673500_127673800
ONT_simulated_read_14830552	chr12	+	172	2	ISM	ENSMUSG00000021277.17	ENSMUST00000117269.8	6972	10	116	29537	23	-29528	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCCTAACCCACCCCTAA	NA	NA	NA	NA	NA	NA	NA	NA	111132919	111204050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_111133037_111203995
ONT_simulated_read_14831102	chr16	-	631	4	ISM	ENSMUSG00000022722.19	ENSMUST00000118438.8	875	8	11201	-221	11201	-56	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGTAATTAGTATATATGA	NA	NA	NA	NA	NA	NA	NA	NA	59441682	59433746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_59434208_59439028_59439042_59439157_59439214_59441581
ONT_simulated_read_1483203	chr10	-	802	1	FSM	ENSMUSG00000096858.5	ENSMUST00000078876.4	960	1	0	158	0	-158	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAAAGGTGTAGCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	129559411	129558609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_129558600_129559400
ONT_simulated_read_14832778	chr12	-	828	1	ISM	ENSMUSG00000073158.5	ENSMUST00000101538.5	2245	4	52422	795	52422	-795	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAATGATAAGCCCCGGC	NA	NA	NA	NA	NA	NA	NA	NA	24094825	24093997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_24094000_24094800
ONT_simulated_read_14836022	chr11	+	440	6	ISM	ENSMUSG00000004018.10	ENSMUST00000109509.8	1187	14	0	48961	0	-48961	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTGGTAGGAAGCACCTA	NA	NA	NA	NA	NA	NA	NA	NA	26337201	26372460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407
ONT_simulated_read_14836873	chr9	-	323	3	ISM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	18574	7621	26	-7216	internal_fragment	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAGTGGTGTGACTGAT	NA	NA	NA	NA	NA	NA	NA	NA	96227921	96222328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_96222440_96225320_96225429_96227817
ONT_simulated_read_14838847	chr18	+	1220	9	ISM	ENSMUSG00000024560.8	ENSMUST00000025444.8	2620	15	2710	264	2710	-264	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCATTCAGTTAGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	74351911	74354300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_74352049_74352201_74352310_74352453_74352639_74352908_74353117_74353191_74353303_74353427_74353478_74353579_74353677_74353898_74354052_74354129
ONT_simulated_read_14839446	chr5	+	1842	14	ISM	ENSMUSG00000038828.14	ENSMUST00000201203.4	6110	17	3806	2013	2187	123	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGGGCAGCAGCAGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	31029161	31034511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31029200_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
ONT_simulated_read_14839483	chr13	-	390	1	FSM	ENSMUSG00000078180.5	ENSMUST00000078729.9	472	1	0	82	0	-82	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACGGAGAGAAGAAGGCGT	NA	NA	NA	NA	NA	NA	NA	NA	120766201	120765811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_120765800_120766200
ONT_simulated_read_14840756	chr7	+	1897	1	FSM	ENSMUSG00000044030.5	ENSMUST00000053713.5	2734	1	0	837	0	-837	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTACCCTGTGCAGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	18737968	18739865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_18738000_18739900
ONT_simulated_read_14841018	chr4	-	1103	1	ISM	ENSMUSG00000028629.10	ENSMUST00000030375.9	1996	2	2342	365	2342	-359	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGAAGTTTAAATGAATGA	NA	NA	NA	NA	NA	NA	NA	NA	120779860	120778757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_120778800_120779900
ONT_simulated_read_14842995	chr11	-	249	1	NIC	ENSMUSG00000045545.9	novel	1698	8	NA	NA	2244	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGCCTCCCTGGTCATT	NA	NA	NA	NA	NA	NA	NA	NA	100094236	100093987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_100094000_100094200
ONT_simulated_read_14843820	chr9	+	1308	4	ISM	ENSMUSG00000032058.15	ENSMUST00000114437.9	3430	15	21148	628	21119	-628	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATATGTCCAGAAATTTAA	NA	NA	NA	NA	NA	NA	NA	NA	50789384	50792103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_50789493_50789997_50790141_50790509_50790602_50791138
ONT_simulated_read_14856628	chr2	-	835	1	ISM	ENSMUSG00000041219.15	ENSMUST00000110948.8	4878	11	14225	2110	10889	-341	mono-exon	FALSE	NA	NA	NA	NA	NA	216	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGATCACATACAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	113664781	113663946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_113663900_113664800
ONT_simulated_read_14860307	chr13	-	588	1	ISM	ENSMUSG00000025869.12	ENSMUST00000026987.12	1756	5	4686	632	4592	-281	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTGTTTGTTTGTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	54733217	54732629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_54732600_54733200
ONT_simulated_read_14860867	chr19	+	948	6	ISM	ENSMUSG00000024989.16	ENST00000371485.8	2634	9	78	4757	0	-3831	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCATCTCTTGGAAAATG	NA	NA	NA	NA	NA	NA	NA	NA	38043536	38058115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_38043766_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087
ONT_simulated_read_14861027	chr7	-	1596	7	ISM	ENSMUSG00000036634.16	ENST00000537831.2	2278	9	3595	211	3595	127	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	205	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTCCTGGGGGCCTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	30608697	30598828	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_30599124_30600062_30600163_30600487_30600585_30601073_30601362_30606330_30606592_30607789_30608048_30608400
ONT_simulated_read_14861958	chr8	+	963	10	ISM	ENSMUSG00000089704.10	ENSMUST00000034458.9	4113	16	117	13113	117	-13113	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTTTGAAGAGCTGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	124958246	125059348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_124958389_125022096_125022191_125032253_125032408_125050410_125050510_125050730_125050799_125051009_125051076_125054830_125054953_125056451_125056540_125058747_125058836_125059306
ONT_simulated_read_1486399	chr7	+	2404	14	FSM	ENSMUSG00000006599.14	ENST00000534641.5	2524	14	-5	125	-5	-125	multi-exon	FALSE	canonical	NA	NA	NA	NA	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTTAAAGATGGCATG	NA	NA	NA	NA	NA	NA	NA	NA	46445537	46473096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_46445713_46451095_46451265_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
ONT_simulated_read_14866218	chr10	-	990	6	ISM	ENSMUSG00000035781.15	ENSMUST00000171416.2	1543	9	3660	383	3660	-383	internal_fragment	FALSE	canonical	NA	NA	NA	NA	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTAGCGCCAGCCGGTA	NA	NA	NA	NA	NA	NA	NA	NA	79749180	79746454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_79746974_79747775_79747832_79747908_79747995_79748229_79748316_79748482_79748604_79749058
ONT_simulated_read_14867438	chr7	-	1381	2	ISM	ENSMUSG00000078768.3	ENSMUST00000088785.6	1709	4	9338	0	9338	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTGTGTGGCAGTGTAA	NA	NA	NA	NA	NA	NA	NA	NA	29780614	29776761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_29778044_29780515
ONT_simulated_read_14868082	chr8	+	564	5	ISM	ENSMUSG00000031862.12	ENSMUST00000034326.7	3915	26	7233	7959	7233	-7959	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCAGGGGCTGAAAATTCA	NA	NA	NA	NA	NA	NA	NA	NA	70251045	70252440	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70251164_70251233_70251372_70251461_70251583_70251970_70252129_70252411
ONT_simulated_read_148698	chr9	-	1295	1	FSM	ENSMUSG00000070282.7	ENSMUST00000133495.3	1008	1	-47	-240	-47	42	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAACGAAGAACCAGGCACA	NA	NA	NA	NA	NA	NA	NA	NA	109660496	109659201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_109659200_109660500
ONT_simulated_read_14870570	chr17	-	581	4	ISM	ENSMUSG00000024097.12	ENSMUST00000234095.2	2403	8	2659	1064	2659	121	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAACATCATTAACTGTT	NA	NA	NA	NA	NA	NA	NA	NA	80511627	80508617	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550
ONT_simulated_read_14871504	chr6	+	1209	12	ISM	ENSMUSG00000056832.15	ENST00000430935.5	1792	16	9432	98	9432	-98	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAATCTCCCTGGCCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	38368441	38402339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_38368500_38371956_38372129_38375217_38375293_38377981_38378085_38380401_38380458_38381416_38381471_38382871_38382936_38386349_38386439_38387708_38387793_38388958_38389029_38398473_38398581_38402062
ONT_simulated_read_14871641	chr1	-	2209	8	ISM	ENSMUSG00000025977.16	ENST00000321801.11	2440	10	11816	3	11816	-3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1504	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATTGAACAAAGAATTCT	NA	NA	NA	NA	NA	NA	NA	NA	55388095	55308223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_55309825_55339245_55339345_55343656_55343786_55344834_55344883_55362808_55362881_55379631_55379760_55385535_55385612_55388039
ONT_simulated_read_14872294	chr1	-	1330	8	ISM	ENSMUSG00000025950.17	ENSMUST00000097709.11	2302	9	3850	743	3850	-741	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAATTTGTTTAGAAGACA	NA	NA	NA	NA	NA	NA	NA	NA	65214490	65198517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389
ONT_simulated_read_14872764	chr17	-	239	2	ISM	ENSMUSG00000036775.14	ENSMUST00000150534.9	1684	8	7346	449	7266	-449	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATCTGTACGTCCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	26301928	26301075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_26301236_26301849
ONT_simulated_read_14873986	chr9	+	1585	9	ISM	ENSMUSG00000032290.8	ENSMUST00000034832.8	4101	13	173	14592	173	-14592	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATGGTTACAAGCAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	56902379	56955499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_56902941_56927187_56927332_56929491_56929582_56930242_56930368_56934659_56934766_56940389_56940501_56943766_56944096_56951658_56951753_56955474
ONT_simulated_read_1487420	chr9	-	2244	1	ISM	ENSMUSG00000047220.6	ENSMUST00000076592.4	2890	7	22630	0	22630	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAGTATTTGTGAATGA	NA	NA	NA	NA	NA	NA	NA	NA	108283053	108280809	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_108280800_108283100
ONT_simulated_read_14878139	chr1	-	253	1	FSM	ENSMUSG00000046334.5	ENSMUST00000063059.5	357	1	0	104	0	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCTGTTTAAGTAATCGC	NA	NA	NA	NA	NA	NA	NA	NA	9872778	9872525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_9872500_9872800
ONT_simulated_read_14878627	chr15	-	433	1	ISM	ENSMUSG00000055737.13	ENSMUST00000069451.11	4175	11	262516	2522	150930	-1273	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGCGAAACTGAGGCAAC	NA	NA	NA	NA	NA	NA	NA	NA	3350196	3349763	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_3349800_3350200
ONT_simulated_read_1487866	chr3	+	729	4	NIC	ENSMUSG00000027896.16	novel	1781	10	NA	NA	0	-6668	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAACTTTTAGATATC	NA	NA	NA	NA	NA	NA	NA	NA	107198630	107208365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_+_107198732_107199723_107199842_107206435_107206598_107208017
ONT_simulated_read_14879477	chr17	-	1881	1	ISM	ENSMUSG00000024212.10	ENSMUST00000025053.10	3636	12	40845	79	40845	-79	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCCCGCATTTTAAACTT	NA	NA	NA	NA	NA	NA	NA	NA	57201570	57199689	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_57199700_57201600
ONT_simulated_read_14880434	chr3	+	1361	10	ISM	ENSMUSG00000027936.19	ENSMUST00000029545.15	2747	14	3132	1466	2968	-1461	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACATGGGCAACAGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	90164601	90169966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_90164719_90165771_90165834_90166460_90166530_90166692_90166800_90166889_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003_90168411_90169757
ONT_simulated_read_148846	chr10	-	2010	12	ISM	ENSMUSG00000042570.15	ENSMUST00000062855.15	2562	14	5412	443	5412	-442	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCACTTCAGGAAAAGCCG	NA	NA	NA	NA	NA	NA	NA	NA	79385513	79376521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384738_79385017_79385144_79385370
ONT_simulated_read_14886540	chr14	-	1403	12	ISM	ENSMUSG00000021870.18	ENST00000295952.7	4366	21	73547	1765	73433	-642	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGCTGTATGTACCAGG	NA	NA	NA	NA	NA	NA	NA	NA	26181340	26136092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_26136144_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26174692_26174756_26181196
ONT_simulated_read_1488696	chr9	-	478	3	ISM	ENSMUSG00000025646.10	ENSMUST00000161521.8	2381	12	0	12055	0	-12055	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCGTGACTCTCTGCGT	NA	NA	NA	NA	NA	NA	NA	NA	108903120	108900907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_108900957_108901674_108901806_108902822
ONT_simulated_read_1488715	chr13	-	1463	5	ISM	ENSMUSG00000113204.2	ENSMUST00000220478.2	1989	6	4779	0	4315	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTTAGAATGCAATCAATG	NA	NA	NA	NA	NA	NA	NA	NA	74761042	74754903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_74755855_74757240_74757302_74758318_74758446_74759382_74759507_74760842
ONT_simulated_read_14887721	chr18	+	536	1	ISM	ENSMUSG00000024483.20	ENST00000297183.10	7604	33	87276	10064	87169	-10064	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTCAAGGTCCACCGGCT	NA	NA	NA	NA	NA	NA	NA	NA	36780912	36781448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_36780900_36781400
ONT_simulated_read_14888100	chr7	-	680	5	ISM	ENSMUSG00000030655.16	ENST00000522841.6	1697	11	12293	245	12293	-223	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTGGGAGAAATGACTT	NA	NA	NA	NA	NA	NA	NA	NA	117799982	117792862	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_117792943_117794258_117794361_117795033_117795259_117797413_117797588_117799883
ONT_simulated_read_14888583	chr18	+	852	6	ISM	ENSMUSG00000024317.16	ENSMUST00000234107.2	2422	8	0	6548	0	-6542	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTTCCTGTGGTGAGTAC	NA	NA	NA	NA	NA	NA	NA	NA	21134397	21154044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944
ONT_simulated_read_14890628	chr2	-	632	1	ISM	ENSMUSG00000049950.7	ENSMUST00000062672.7	1042	2	2802	261	2802	-261	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCGGAAAGCCAGGACAACGA	NA	NA	NA	NA	NA	NA	NA	NA	3330878	3330246	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_3330200_3330900
ONT_simulated_read_14890825	chr3	-	199	2	ISM	ENSMUSG00000047557.3	ENSMUST00000058981.3	1112	6	2468	3009	2468	-3009	internal_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCGCCTGCGGTTATGTAA	NA	NA	NA	NA	NA	NA	NA	NA	67368791	67368339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_67368392_67368644
ONT_simulated_read_14890952	chr4	-	266	1	ISM	ENSMUSG00000035495.16	ENSMUST00000107772.8	3726	10	6340	17124	6303	-16138	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTTAGCCCCCAGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	46132135	46131869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_46131900_46132100
ONT_simulated_read_1489151	chr6	+	347	4	ISM	ENSMUSG00000064080.13	ENSMUST00000041544.8	4786	18	43949	12821	23327	-12164	internal_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGCTGTGTGCAGAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	91233385	91236701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_91233427_91233861_91233976_91234706_91234809_91236611
ONT_simulated_read_14893059	chr6	+	569	2	Fusion	ENSMUSG00000098470.2_ENSMUSG00000055172.11	novel	2981	11	NA	NA	0	-9643	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCAGTTTGACGTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	124489363	124548487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Fusion_chr6_+_124489760_124548314
ONT_simulated_read_14894004	chr9	-	1379	2	ISM	ENSMUSG00000057367.13	ENSMUST00000190341.7	3331	8	0	15842	0	2618	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGTCACCTCTGGAACGAG	NA	NA	NA	NA	NA	NA	NA	NA	7837058	7834069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_7835381_7836990
ONT_simulated_read_14895434	chr1	+	321	3	ISM	ENSMUSG00000033793.13	ENSMUST00000192698.3	1811	13	10	73352	10	-73273	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCCGAGGACAAGCAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	5153386	5159290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_5153502_5154639_5154787_5159231
ONT_simulated_read_1489559	chr3	+	356	1	ISM	ENSMUSG00000001418.14	ENSMUST00000177005.8	4219	6	4886	1049	4827	-1049	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATTTAAAATTTAAGTTGG	NA	NA	NA	NA	NA	NA	NA	NA	88237215	88237571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_88237200_88237600
ONT_simulated_read_14896286	chr6	-	933	5	ISM	ENSMUSG00000039130.19	ENSMUST00000080812.14	1824	10	16103	250	16082	-156	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGGTCAGCTGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	30374919	30366628	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_30366745_30370263_30370471_30372736_30372950_30373241_30373483_30374763
ONT_simulated_read_14897	chr18	-	830	6	ISM	ENSMUSG00000006740.15	ENSMUST00000025083.14	6032	26	20527	13060	20527	-13060	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTACCTTCAGAATGTAG	NA	NA	NA	NA	NA	NA	NA	NA	6220996	6214061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_6214088_6214511_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801
ONT_simulated_read_1489720	chr11	+	4084	24	ISM	ENSMUSG00000020747.19	ENSMUST00000239299.2	5014	31	8255	-191	8253	-142	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAATAGTTACAGAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	115679779	115690050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_115679858_115680069_115680187_115680444_115680502_115680750_115680856_115680995_115681161_115681792_115682003_115682572_115682889_115683142_115683317_115683686_115683790_115683882_115684101_115684833_115685016_115685091_115685231_115685488_115685605_115685806_115685907_115686142_115686252_115686450_115686641_115686891_115686970_115687215_115687302_115687561_115687644_115687955_115688105_115688192_115688288_115688388_115688483_115688633_115688805_115689100
ONT_simulated_read_14899811	chr10	-	180	2	ISM	ENSMUSG00000003344.15	ENSMUST00000126980.8	2449	9	12184	1225	12184	-1225	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGCCACGCTGAAGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	80480144	80479675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80479807_80480095
ONT_simulated_read_14902829	chr11	-	1075	1	ISM	ENSMUSG00000017400.11	ENSMUST00000017544.9	3050	11	15409	356	15409	-356	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTTCCTCAAGAGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	97928879	97927804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97927800_97928900
ONT_simulated_read_14903156	chrX	+	292	1	ISM	ENSMUSG00000031065.15	ENSMUST00000033380.7	3120	16	0	11171	0	-11166	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGAAAAGGAGGTCGCGC	NA	NA	NA	NA	NA	NA	NA	NA	20554656	20554948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_20554700_20554900
ONT_simulated_read_14903755	chr16	-	827	5	ISM	ENSMUSG00000044626.14	ENST00000296252.9	1617	9	16143	98	16143	-98	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	390	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAGACAGAAATAGCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	21786878	21774626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734
ONT_simulated_read_14905795	chr13	-	3340	18	ISM	ENSMUSG00000021301.10	ENST00000453890.5	4850	27	62460	34605	62460	-34605	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACAAGCTCTACATCACC	NA	NA	NA	NA	NA	NA	NA	NA	14546618	14439734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_14439812_14440542_14440664_14445543_14445654_14446591_14446676_14452862_14452960_14455000_14455107_14460132_14460268_14471854_14472041_14474910_14475033_14480560_14480704_14481367_14481519_14490601_14491946_14493458_14493560_14497062_14497206_14515329_14515500_14520604_14520681_14531717_14531813_14546539
ONT_simulated_read_14905805	chr8	+	843	3	ISM	ENSMUSG00000070047.15	ENST00000614102.4	14621	26	94036	1073	94027	-238	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCATGTAGAGAACCCTACA	NA	NA	NA	NA	NA	NA	NA	NA	45497277	45504208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_45497592_45498067_45498206_45503817
ONT_simulated_read_14909118	chr16	-	231	3	ISM	ENSMUSG00000003528.16	ENSMUST00000003622.16	1666	9	1698	853	1698	-853	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGACTGCGGCTTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	17744385	17743939	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17743968_17744052_17744169_17744298
ONT_simulated_read_1490963	chr11	+	1390	10	ISM	ENSMUSG00000005417.18	ENSMUST00000108751.8	4021	24	0	32414	0	-32414	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATGAGGATGGCCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	59553332	59634635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_59553775_59586951_59587030_59587783_59587850_59618377_59618530_59622333_59622419_59626769_59626891_59627897_59628055_59631945_59632088_59632816_59632925_59634596
ONT_simulated_read_14909817	chr13	-	633	6	ISM	ENSMUSG00000021493.16	ENSMUST00000046246.13	1697	13	5144	6356	5132	2001	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTCCTGGAAGAGGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	55656115	55652584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_55652652_55653746_55653982_55654118_55654181_55655142_55655180_55655300_55655438_55656020
ONT_simulated_read_14912292	chr16	-	318	1	FSM	ENSMUSG00000061361.3	ENSMUST00000078554.2	939	1	-37	658	-37	-658	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGGTGTGCAGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	19349705	19349387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_19349400_19349700
ONT_simulated_read_14913034	chr2	-	1552	6	ISM	ENSMUSG00000034101.15	ENSMUST00000036811.13	5126	19	24934	14439	24934	-14424	internal_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCATGCGCTACATGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	84454890	84445565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613
ONT_simulated_read_14913471	chr2	+	1548	5	ISM	ENSMUSG00000001855.16	ENSMUST00000065398.13	6605	36	59540	4793	775	2	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCAGGTGGGACCTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	31923987	31937590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_31924982_31928113_31928185_31929334_31929489_31932428_31932582_31937414
ONT_simulated_read_14917634	chr6	-	1186	5	ISM	ENSMUSG00000030059.16	ENSMUST00000095664.6	5732	17	18798	1778	18798	-1778	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAGAAGTCACACTGAC	NA	NA	NA	NA	NA	NA	NA	NA	97137285	97131735	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_97132459_97133804_97133931_97135006_97135160_97135421_97135524_97137203
ONT_simulated_read_14918055	chr3	-	2466	8	NIC	ENSMUSG00000039735.17	novel	4151	16	NA	NA	61584	-743	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	280	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTATTGGATTTCAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	122351755	122333116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_122334574_122335773_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122350060_122350220_122351551
ONT_simulated_read_14919525	chr3	-	435	4	ISM	ENSMUSG00000039795.15	ENSMUST00000108377.8	936	8	5307	198	2548	-103	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAATGGAGGAAATGTTA	NA	NA	NA	NA	NA	NA	NA	NA	10411066	10405876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_10405966_10406053_10406206_10409860_10409983_10410994
ONT_simulated_read_14919992	chr14	-	1077	4	ISM	ENSMUSG00000000776.14	ENSMUST00000180358.3	2032	8	2523	294	2523	-294	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACTGAAGACTTAAAACTC	NA	NA	NA	NA	NA	NA	NA	NA	70678207	70676529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038
ONT_simulated_read_14921198	chr8	+	541	3	ISM	ENSMUSG00000019428.17	ENST00000608443.6	1530	9	3369	2416	3278	-2416	internal_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGCGTTGCAACCATAG	NA	NA	NA	NA	NA	NA	NA	NA	70983773	70985396	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70983924_70984171_70984393_70985226
ONT_simulated_read_14926496	chr15	-	2933	1	ISM	ENSMUSG00000022479.16	ENSMUST00000023119.15	4370	10	50685	268	50685	-268	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGAGAAAGTAGGGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	97755506	97752573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_97752600_97755500
ONT_simulated_read_14927937	chr19	-	633	1	ISM	ENSMUSG00000024736.16	ENSMUST00000025645.14	3657	11	10822	664	10660	-652	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAATCAGGAGGAACTGAG	NA	NA	NA	NA	NA	NA	NA	NA	10836482	10835849	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_10835800_10836500
ONT_simulated_read_14928372	chr3	-	773	4	ISM	ENSMUSG00000039103.13	ENSMUST00000199423.5	2016	13	12438	0	10932	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTCTGTCCTTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	151948510	151943202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_151943217_151943301_151943660_151943883_151944070_151948295
ONT_simulated_read_14928773	chr7	-	1315	1	ISM	ENSMUSG00000030824.18	ENSMUST00000211765.2	4853	13	16472	2162	9351	488	mono-exon	FALSE	NA	NA	NA	NA	NA	200	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGTCCTTTGAGTTCAAG	NA	NA	NA	NA	NA	NA	NA	NA	45143358	45142043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45142000_45143400
ONT_simulated_read_14930481	chr15	-	365	5	ISM	ENSMUSG00000054277.9	ENSMUST00000226124.2	2461	16	19581	14605	19581	-13746	internal_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAGAAAGATGAAAGACT	NA	NA	NA	NA	NA	NA	NA	NA	83214794	83198626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_83198670_83206774_83206915_83208304_83208352_83211805_83211866_83214719
ONT_simulated_read_1493395	chr11	-	1190	8	ISM	ENSMUSG00000020530.15	ENSMUST00000172405.8	2950	14	16570	2151	16478	-1540	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCACCGTGACAAGACCAA	NA	NA	NA	NA	NA	NA	NA	NA	84744994	84725337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879
ONT_simulated_read_1493496	chr10	-	533	1	NIC	ENSMUSG00000004937.7	novel	1969	12	NA	NA	15163	-395	mono-exon	FALSE	NA	NA	NA	NA	NA	609	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAACTTTGTGTCCAGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	80880838	80880305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_80880300_80880800
ONT_simulated_read_1493580	chr7	-	667	7	ISM	ENSMUSG00000037469.12	ENST00000594229.1	870	8	592	0	592	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1638	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGAGCAGGTGGGAAGGGA	NA	NA	NA	NA	NA	NA	NA	NA	28316089	28313644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28313716_28313817_28313886_28313960_28314019_28314104_28314213_28314285_28314401_28314497_28314561_28315905
ONT_simulated_read_14937259	chr5	-	1336	1	ISM	ENSMUSG00000039706.12	ENSMUST00000199534.5	2541	9	326144	8	326127	0	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGAATCTGGCTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	44630817	44629481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_44629500_44630800
ONT_simulated_read_14937565	chr3	-	308	3	ISM	ENSMUSG00000028179.13	ENSMUST00000118539.2	1815	12	4965	19382	4965	-19382	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAACACCTTCATGTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	157625749	157619266	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_157619369_157624062_157624173_157625653
ONT_simulated_read_1494096	chr2	-	389	1	ISM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	49690	603	49690	-603	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTCAGCAATAAAGAATACT	NA	NA	NA	NA	NA	NA	NA	NA	139962794	139962405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_139962400_139962800
ONT_simulated_read_14940971	chr16	+	719	6	ISM	ENSMUSG00000022837.15	ENSMUST00000023535.4	2257	15	22844	427	22844	-427	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCACCCTGAAGCACATACA	NA	NA	NA	NA	NA	NA	NA	NA	36671613	36692648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
ONT_simulated_read_1494219	chr7	-	1089	1	ISM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	89498	1247	89498	-1247	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTTGGAATCCTTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	80363666	80362577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80362600_80363700
ONT_simulated_read_14943814	chr6	+	653	8	ISM	ENSMUSG00000030281.17	ENSMUST00000058300.14	2302	17	856	4113	856	-4113	internal_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGGGTACTGTCCCCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	113449243	113455988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_113449345_113449587_113449651_113449738_113449849_113451121_113451234_113453386_113453500_113453695_113453756_113455824_113455880_113455949
ONT_simulated_read_14944985	chr5	-	751	1	ISM	ENSMUSG00000040464.16	ENSMUST00000115441.9	2972	10	20096	1238	20074	541	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTTATCGATATATGTAT	NA	NA	NA	NA	NA	NA	NA	NA	5589442	5588691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_5588700_5589400
ONT_simulated_read_14945352	chrX	+	635	5	ISM	ENSMUSG00000045103.20	ENST00000474231.5	5148	35	522554	385608	-449102	-254235	internal_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGACAGAGCAGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	83642806	83860968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_83642857_83690642_83690833_83817187_83817361_83825524_83825682_83860903
ONT_simulated_read_14948359	chr2	-	732	1	ISM	ENSMUSG00000040591.19	ENSMUST00000064652.14	2896	9	167507	1316	167507	-1316	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCGGGCTAATCCCAAATAA	NA	NA	NA	NA	NA	NA	NA	NA	91107460	91106728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_91106700_91107500
ONT_simulated_read_14948504	chr8	-	455	1	ISM	ENSMUSG00000007950.10	ENSMUST00000008094.10	1978	5	1706	4790	1706	-4790	mono-exon	FALSE	NA	NA	NA	NA	NA	196	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCAGGCTGATGTGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	71914593	71914138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71914100_71914600
ONT_simulated_read_14949891	chr2	-	531	1	ISM	ENSMUSG00000039725.7	ENSMUST00000039007.7	1880	2	1635	1049	1635	-1049	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGGTCTGTGATCGTG	NA	NA	NA	NA	NA	NA	NA	NA	165333609	165333078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_165333100_165333600
ONT_simulated_read_14953730	chr8	+	723	5	ISM	ENSMUSG00000019428.17	ENSMUST00000119353.9	1720	9	38	3700	7	-3534	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGCCAACCGCAAGCGG	NA	NA	NA	NA	NA	NA	NA	NA	70980411	70984278	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984174
ONT_simulated_read_1495474	chr3	-	1650	1	ISM	ENSMUSG00000027893.15	ENSMUST00000029490.15	3863	17	31477	314	18813	-314	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACTTGTCTTGGCTAACA	NA	NA	NA	NA	NA	NA	NA	NA	107572399	107570749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_107570700_107572400
ONT_simulated_read_14954796	chr16	+	1086	10	ISM	ENSMUSG00000038084.17	ENST00000361510.8	4310	31	72	45120	63	-44153	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGATTATGATGCCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	29398260	29426541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500
ONT_simulated_read_14956962	chr14	+	339	4	ISM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	52	10266	52	-6677	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATGGTCCAACTGCCCG	NA	NA	NA	NA	NA	NA	NA	NA	63359962	63373106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056
ONT_simulated_read_14958617	chr8	-	243	1	NIC	ENSMUSG00000031513.9	novel	2879	4	NA	NA	8954	0	mono-exon	FALSE	NA	NA	NA	NA	NA	642	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTCGCCTCCTGTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	34604993	34604750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_34604800_34605000
ONT_simulated_read_14962121	chr6	-	2383	11	ISM	ENSMUSG00000061436.16	ENSMUST00000160962.8	3972	15	17945	18257	32	-12712	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTGCGCCATGGTACACAG	NA	NA	NA	NA	NA	NA	NA	NA	38796214	38693071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_38693157_38695688_38695869_38698389_38698530_38706855_38706978_38707803_38707931_38714292_38714456_38720010_38720196_38722598_38722686_38724381_38724502_38724808_38724933_38795164
ONT_simulated_read_14963255	chr12	+	498	1	ISM	ENSMUSG00000020591.12	ENST00000306928.6	1325	4	61	5986	0	-5749	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGCCCATGGCGGTTAT	NA	NA	NA	NA	NA	NA	NA	NA	16703500	16703998	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_16703500_16704000
ONT_simulated_read_14968306	chr6	-	1130	9	ISM	ENSMUSG00000029752.13	ENST00000444334.5	1679	11	4051	808	4051	-808	internal_fragment	FALSE	canonical	NA	NA	NA	NA	157	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTGGCGACCCAAAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	7685400	7676083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168
ONT_simulated_read_14968449	chr11	-	441	1	FSM	ENSMUSG00000099681.2	ENSMUST00000190120.2	3708	1	662	2605	662	-2605	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTTGTACATTCTCCAT	NA	NA	NA	NA	NA	NA	NA	NA	105071597	105071156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_105071200_105071600
ONT_simulated_read_1497307	chr8	-	962	1	ISM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	77642	1106	77642	-1092	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGTTTTCCCCGAAT	NA	NA	NA	NA	NA	NA	NA	NA	61966534	61965572	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_61965600_61966500
ONT_simulated_read_14975285	chr5	-	532	7	ISM	ENSMUSG00000045102.13	ENST00000382865.5	2589	24	45894	6907	45894	-6907	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCCATCTTGGGTAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	34261299	34171689	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_34171698_34181649_34181782_34190089_34190173_34234440_34234556_34236259_34236338_34237245_34237304_34261241
ONT_simulated_read_14976222	chr8	-	793	1	NIC	ENSMUSG00000034424.6	novel	1443	5	NA	NA	10810	-125	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTGACTGCTAGTTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	117709466	117708673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_117708700_117709500
ONT_simulated_read_14978829	chr11	-	1197	5	FSM	ENSMUSG00000018168.9	ENST00000377958.6	1197	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCAATGCGAGGGTCAAC	NA	NA	NA	NA	NA	NA	NA	NA	98407763	98357804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_98358513_98367752_98367870_98376399_98376517_98379677_98379846_98407676
ONT_simulated_read_1497921	chr17	-	1549	1	ISM	ENSMUSG00000056692.14	ENSMUST00000114863.10	3892	5	66643	1199	66470	773	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTCCATGTCCCAAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	27972956	27971407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_27971400_27973000
ONT_simulated_read_14979215	chr5	-	1257	8	ISM	ENSMUSG00000029096.16	ENSMUST00000087629.10	2750	9	320	2121	10	-2121	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACCCAGACTTTCCAGCG	NA	NA	NA	NA	NA	NA	NA	NA	35836806	35811487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_35811511_35812887_35812937_35821306_35821422_35822757_35822791_35823393_35823589_35825526_35825750_35828375_35828476_35836287
ONT_simulated_read_14981194	chr4	-	1268	5	ISM	ENSMUSG00000028909.18	ENST00000428026.6	5274	29	51360	360	48910	-228	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCACAAGGCTGAATCACA	NA	NA	NA	NA	NA	NA	NA	NA	131499917	131496126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_131496872_131497063_131497200_131498477_131498636_131498757_131498884_131499814
ONT_simulated_read_1498214	chr7	+	686	6	ISM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	55	1254	55	-1254	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	394	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCACTGACCACACTGACTA	NA	NA	NA	NA	NA	NA	NA	NA	142606530	142620417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397
ONT_simulated_read_14982829	chr18	-	673	5	ISM	ENSMUSG00000024304.15	ENSMUST00000025166.14	4843	16	34642	55152	34642	-55006	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTGACATTGTCATCAAT	NA	NA	NA	NA	NA	NA	NA	NA	16907661	16777085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_16777132_16779528_16779685_16781543_16781691_16783328_16783556_16907564
ONT_simulated_read_14985389	chr1	+	1551	9	FSM	ENSMUSG00000026596.14	ENST00000392043.4	1847	9	259	37	0	-37	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAACAATGTTCCATGA	NA	NA	NA	NA	NA	NA	NA	NA	156386618	156464440	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_156386776_156450054_156450226_156452857_156453154_156457422_156457696_156458914_156459000_156460649_156460828_156461322_156461508_156462634_156462788_156464387
ONT_simulated_read_14985842	chr15	-	907	7	ISM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	2374	0	2374	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12905	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	79965233	79961991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096
ONT_simulated_read_14986853	chr2	-	703	1	ISM	ENSMUSG00000026853.16	ENSMUST00000102855.8	4224	15	12986	1612	10462	415	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAAGGTGCCATCTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	30292797	30292094	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_30292100_30292800
ONT_simulated_read_14988058	chr11	-	658	4	ISM	ENSMUSG00000001891.17	ENSMUST00000102875.11	2683	10	0	12542	0	-11897	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTGGTGTAAGAAATGAGA	NA	NA	NA	NA	NA	NA	NA	NA	21320477	21283679	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_21283811_21303348_21303457_21304278_21304407_21320186
ONT_simulated_read_14993089	chr11	-	929	1	ISM	ENSMUSG00000020173.18	ENSMUST00000172919.8	2566	8	226765	503	174105	-433	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACATTCTGTGGCTTACA	NA	NA	NA	NA	NA	NA	NA	NA	12188039	12187110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_12187100_12188000
ONT_simulated_read_14996304	chr9	-	1313	1	NIC	ENSMUSG00000043923.9	novel	1725	11	NA	NA	4509	704	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCATCATGAGACTCACTC	NA	NA	NA	NA	NA	NA	NA	NA	44324809	44323496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_44323500_44324800
ONT_simulated_read_14997398	chr5	-	2117	11	ISM	ENSMUSG00000049550.18	ENSMUST00000031382.14	4387	25	38196	-634	38196	223	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTACTGGTTTTACA	NA	NA	NA	NA	NA	NA	NA	NA	123755885	123716672	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_123717566_123718062_123718188_123720782_123720833_123721346_123721498_123721583_123721702_123728855_123728909_123741661_123741783_123747301_123747409_123749884_123750002_123755398_123755615_123755719
ONT_simulated_read_14998716	chr3	-	246	1	ISM	ENSMUSG00000037892.14	ENSMUST00000035931.13	5168	4	12057	1718	12023	-593	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCATCTCTGCTATCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	49699708	49699462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_49699500_49699700
ONT_simulated_read_1500015	chr7	-	158	3	ISM	ENSMUSG00000030742.8	ENST00000395456.7	512	8	473	390	473	-390	internal_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAGAGTGAGGAGAGCGC	NA	NA	NA	NA	NA	NA	NA	NA	125967251	125963764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_125963794_125967047_125967143_125967217
ONT_simulated_read_15001724	chr1	+	220	1	ISM	ENSMUSG00000054412.6	ENSMUST00000067468.6	2616	6	0	14956	0	-14956	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGCAGCTTTTTCTCG	NA	NA	NA	NA	NA	NA	NA	NA	135512510	135512730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_135512500_135512700
ONT_simulated_read_15002199	chr11	-	1689	7	ISM	ENSMUSG00000034621.15	ENSMUST00000143842.2	6871	8	17881	5024	17881	-5024	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCAGGCTCCTCAAAGGATC	NA	NA	NA	NA	NA	NA	NA	NA	102429144	102371764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_102372914_102378325_102378457_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102429107
ONT_simulated_read_15002917	chr11	-	864	1	FSM	ENSMUSG00000084384.4	ENSMUST00000117893.2	792	1	0	-72	0	72	mono-exon	FALSE	NA	NA	NA	NA	NA	624	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTCTCCTTCAAAAAAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	58284386	58283522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_58283500_58284400
ONT_simulated_read_15005978	chr11	-	1242	1	NIC	ENSMUSG00000025173.14	novel	2321	10	NA	NA	25926	0	mono-exon	FALSE	NA	NA	NA	NA	NA	356	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAGAGCCATATGTAATG	NA	NA	NA	NA	NA	NA	NA	NA	121219291	121218049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_121218000_121219300
ONT_simulated_read_15006067	chr3	-	1330	1	ISM	ENSMUSG00000068798.11	ENSMUST00000090678.11	2407	8	72393	347	72342	-347	mono-exon	FALSE	NA	NA	NA	NA	NA	384	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATGTTCTCCATGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	105636259	105634929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_105634900_105636300
ONT_simulated_read_15007666	chr16	-	390	1	ISM	ENSMUSG00000062203.16	ENSMUST00000167571.8	3716	15	33427	1162	33366	-402	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTCTGCACATGTTAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	11038707	11038317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_11038300_11038700
ONT_simulated_read_15008952	chr2	-	323	1	ISM	ENSMUSG00000027305.10	ENSMUST00000110801.8	1478	5	7052	0	4893	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	119486249	119485926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_119485900_119486200
ONT_simulated_read_15009757	chr6	+	595	4	ISM	ENSMUSG00000046947.13	ENSMUST00000140364.8	3542	8	2519	4707	2428	-3690	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGATCCACTGGGGTTGG	NA	NA	NA	NA	NA	NA	NA	NA	39553325	39560996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_39553444_39556596_39556726_39557929_39558026_39560744
ONT_simulated_read_15011030	chr13	-	397	1	ISM	ENSMUSG00000016018.5	ENSMUST00000022281.5	3689	27	59407	177	59407	-177	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCGGGCCAGCGCCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	113004525	113004128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_113004100_113004500
ONT_simulated_read_15011540	chr14	+	464	4	ISM	ENSMUSG00000022139.18	ENST00000345429.10	4607	9	120758	2549	71754	-477	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCCTAAGATAGTTAACCA	NA	NA	NA	NA	NA	NA	NA	NA	120633898	120666561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_120634017_120640747_120640784_120642049_120642145_120666346
ONT_simulated_read_15012365	chrX	-	1370	1	ISM	ENSMUSG00000036502.15	ENSMUST00000089054.11	3311	9	52787	977	52777	-971	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATGAACACATTCACTGG	NA	NA	NA	NA	NA	NA	NA	NA	37288529	37287159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_37287200_37288500
ONT_simulated_read_15014736	chr13	+	1337	12	ISM	ENSMUSG00000057649.7	ENSMUST00000099384.4	2407	16	2878	483	2878	-482	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTCTCATCCTCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	74088834	74108531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_74088910_74090062_74090174_74090809_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
ONT_simulated_read_1501479	chr7	-	623	4	ISM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	3992	5677	3992	-5677	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCTTATCGTCTTTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	19651093	19643179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_19643229_19644529_19644682_19648662_19648790_19650798
ONT_simulated_read_1501499	chr9	-	764	1	ISM	ENSMUSG00000036777.9	ENSMUST00000040912.9	4605	24	56015	398	56015	-398	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTACAATAAGGACAAATGTA	NA	NA	NA	NA	NA	NA	NA	NA	22244469	22243705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_22243700_22244500
ONT_simulated_read_15015410	chr7	-	290	3	ISM	ENSMUSG00000061787.16	ENSMUST00000080813.5	494	5	245	1037	245	-1037	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATCCCGACACCAAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	80994757	80993517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80993549_80994058_80994165_80994604
ONT_simulated_read_15018799	chr11	+	498	4	ISM	ENSMUSG00000059474.14	ENST00000586178.6	5295	17	26	38128	0	-21427	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAACGAAACGTTTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	93777044	93799677	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_93777243_93777847_93777900_93795984_93796185_93799629
ONT_simulated_read_15019715	chr15	-	2500	1	ISM	ENSMUSG00000048546.9	ENSMUST00000050467.9	4151	2	6613	1101	6613	-1101	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTGGGAACTGCTGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	81736073	81733573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81733600_81736100
ONT_simulated_read_15020316	chr5	-	757	1	ISM	ENSMUSG00000029270.11	ENSMUST00000031198.11	2721	5	76897	1379	76897	-482	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATTTCCTACACAAATG	NA	NA	NA	NA	NA	NA	NA	NA	108058054	108057297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_108057300_108058100
ONT_simulated_read_15022211	chr11	+	309	1	ISM	ENSMUSG00000003581.15	ENSMUST00000003677.11	1874	9	12	5650	12	-5650	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGGTCCGGAACCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	4085213	4085522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_4085200_4085500
ONT_simulated_read_15022509	chr11	-	196	1	ISM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	4276	439	4276	-439	mono-exon	FALSE	NA	NA	NA	NA	NA	528	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACCTTCATGACCTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	97668987	97668791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97668800_97669000
ONT_simulated_read_15029322	chr19	-	289	1	FSM	ENSMUSG00000092341.4	ENSMUST00000172812.3	6983	1	733	5961	732	265	mono-exon	FALSE	NA	NA	NA	NA	NA	249	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTCAAATTTCTGATGG	NA	NA	NA	NA	NA	NA	NA	NA	5851967	5851678	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5851700_5852000
ONT_simulated_read_15029431	chr5	-	945	1	ISM	ENSMUSG00000037411.11	ENSMUST00000041388.11	3011	9	9081	730	9076	-722	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCCCCCCCCCCCCCCCGT	NA	NA	NA	NA	NA	NA	NA	NA	137092032	137091087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137091100_137092000
ONT_simulated_read_15032650	chr12	-	753	3	ISM	ENSMUSG00000061533.17	ENSMUST00000141429.8	4807	26	94786	261878	94714	29140	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCACCTGGAGGAAGAAAT	NA	NA	NA	NA	NA	NA	NA	NA	91256397	91227143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_91227411_91233509_91233861_91256262
ONT_simulated_read_15033543	chr17	+	955	1	FSM	ENSMUSG00000118053.2	ENSMUST00000237205.2	418	1	0	-537	0	537	mono-exon	FALSE	NA	NA	NA	NA	NA	213	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCAATGCATACAGAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	30810481	30811436	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_30810500_30811400
ONT_simulated_read_1503711	chr7	-	2191	15	ISM	ENSMUSG00000051910.14	ENSMUST00000166207.3	2825	16	44524	529	23129	-375	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTATCCTGGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	115400816	115076421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_115076457_115085782_115086000_115088897_115089132_115111895_115112005_115140856_115141042_115143704_115143889_115149244_115149395_115178250_115178374_115179799_115179880_115196730_115196852_115258750_115258820_115261506_115261680_115300930_115301021_115376285_115376494_115400603
ONT_simulated_read_15038029	chr15	-	2465	1	NIC	ENSMUSG00000022462.8	novel	4660	16	NA	NA	9501	-373	mono-exon	FALSE	NA	NA	NA	NA	NA	272	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATTACTTGTACAGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	96588110	96585645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_96585600_96588100
ONT_simulated_read_15042138	chr1	-	1179	7	ISM	ENSMUSG00000040225.16	ENSMUST00000028016.16	8815	35	56305	4633	56236	-4633	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCATGATGGCGACCACAG	NA	NA	NA	NA	NA	NA	NA	NA	162511814	162505603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_162505798_162507068_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623
ONT_simulated_read_15042627	chr14	-	2064	11	ISM	ENSMUSG00000021870.18	ENST00000428312.6	4606	20	73956	935	73433	115	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTGCATAATTTCAATGC	NA	NA	NA	NA	NA	NA	NA	NA	26181340	26135335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26159833_26159894_26160102_26160184_26163729_26163790_26181196
ONT_simulated_read_15042987	chr4	-	187	2	NIC	ENSMUSG00000028441.13	novel	582	4	NA	NA	383	-606	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTGTTACAACTCCCCCG	NA	NA	NA	NA	NA	NA	NA	NA	41507242	41505616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_41505655_41507093
ONT_simulated_read_1504303	chr12	+	1964	1	ISM	ENSMUSG00000035614.12	ENST00000361462.7	6435	20	64	54803	0	-54803	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGGTCAAGCCATTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	65012577	65014541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_65012600_65014500
ONT_simulated_read_15043347	chr16	+	551	1	FSM	ENSMUSG00000103847.2	ENSMUST00000194813.2	519	1	0	-32	0	32	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTATTATGAACTGAAACT	NA	NA	NA	NA	NA	NA	NA	NA	32227353	32227904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_32227400_32227900
ONT_simulated_read_15044748	chr7	+	433	3	ISM	ENSMUSG00000044876.16	ENSMUST00000108566.8	1648	5	1522	2263	0	-1688	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCAGCAATGAGGGCACCT	NA	NA	NA	NA	NA	NA	NA	NA	6177033	6191157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_6177101_6186860_6187202_6191132
ONT_simulated_read_15045053	chr13	-	1971	13	ISM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	10713	2124	6487	263	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGATGGCTGGTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	96796731	96787598	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625
ONT_simulated_read_15045293	chr12	-	555	1	ISM	ENSMUSG00000021124.14	ENSMUST00000055262.13	1490	6	16096	0	16096	0	mono-exon	FALSE	NA	NA	NA	NA	NA	280	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTCATTTTCTGATTCGT	NA	NA	NA	NA	NA	NA	NA	NA	79203345	79202790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_79202800_79203300
ONT_simulated_read_1504573	chr19	+	1440	11	ISM	ENSMUSG00000083282.4	ENSMUST00000119694.3	1980	14	1116	0	992	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGTAAGTGCTTAGTC	NA	NA	NA	NA	NA	NA	NA	NA	4906273	4910946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4906337_4906539_4906616_4907997_4908112_4908214_4908361_4908443_4908541_4908619_4908701_4909430_4909551_4909629_4909695_4909785_4909877_4910277_4910337_4910418
ONT_simulated_read_1504619	chr3	-	1953	11	FSM	ENSMUSG00000028063.16	ENST00000675667.1	2622	11	12	657	-2	607	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCGGGGGACCCCGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	88410644	88389904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_88389920_88390624_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88410054
ONT_simulated_read_15047036	chr8	-	262	2	ISM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	8799	578	8799	-578	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCTGACTACATAGCCGG	NA	NA	NA	NA	NA	NA	NA	NA	108142882	108139698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_108139816_108142737
ONT_simulated_read_15052707	chr9	-	899	4	ISM	ENSMUSG00000050627.14	ENSMUST00000146623.8	4391	8	23026	2690	-1885	1315	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCATTTATATGCAAGGGA	NA	NA	NA	NA	NA	NA	NA	NA	114740029	114731098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_114731571_114732728_114732836_114733842_114734077_114739943
ONT_simulated_read_15059414	chr9	-	829	3	ISM	ENSMUSG00000031988.11	ENSMUST00000034470.11	3575	6	17165	1757	17165	-1757	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGCATTTACCTGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	26924196	26920823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_26921334_26921659_26921803_26924020
ONT_simulated_read_1505955	chr2	-	1561	13	FSM	ENSMUSG00000027634.15	ENST00000373773.7	1563	13	3	-1	3	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGGTGGCAGTCACCTC	NA	NA	NA	NA	NA	NA	NA	NA	156812059	156770005	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156800386_156800423_156811956
ONT_simulated_read_1506128	chr14	-	1301	2	ISM	ENSMUSG00000021738.6	ENST00000484332.1	2682	9	32233	0	32233	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTCACTCTTGAAGTAG	NA	NA	NA	NA	NA	NA	NA	NA	8369828	8366122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_8366457_8368861
ONT_simulated_read_15062296	chr5	+	1882	16	ISM	ENSMUSG00000038828.14	ENSMUST00000201203.4	6110	17	1623	2760	4	-624	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGCCATAGCGTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	31026978	31033764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31027163_31027932_31028133_31028763_31028915_31029064_31029200_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706
ONT_simulated_read_15063068	chr11	+	1780	10	ISM	ENSMUSG00000020272.9	ENSMUST00000102821.4	5026	19	0	23717	0	-23717	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAAGTCCAGGGAGGCACC	NA	NA	NA	NA	NA	NA	NA	NA	32483304	32550870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_32483560_32505123_32505289_32524498_32524548_32527623_32527774_32537312_32537386_32538755_32538951_32539409_32539492_32546614_32546750_32548438_32548985_32550740
ONT_simulated_read_15063273	chr7	-	1332	10	ISM	ENSMUSG00000053158.11	ENST00000414248.6	2195	17	594	2907	-8	-2907	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGCAGCCCACGGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	80037090	80030585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80030641_80030912_80031036_80032060_80032145_80032268_80032456_80032558_80032682_80032817_80032938_80033016_80033155_80033581_80033766_80033938_80034036_80036869
ONT_simulated_read_15063478	chr1	-	510	1	ISM	ENSMUSG00000025978.15	ENSMUST00000027121.15	3677	9	54720	1394	54720	-1394	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGGCTCACTTCCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	55211221	55210711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_55210700_55211200
ONT_simulated_read_15067421	chr1	-	469	1	ISM	ENSMUSG00000057335.12	ENSMUST00000057037.13	6930	20	71147	1856	14075	71	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTCAGACAGCCACTTGA	NA	NA	NA	NA	NA	NA	NA	NA	176563543	176563074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_176563100_176563500
ONT_simulated_read_15074042	chr7	-	610	1	NIC	ENSMUSG00000078566.9	novel	1756	6	NA	NA	6870	-516	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCGTCCTGCTTTGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	138493690	138493080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_138493100_138493700
ONT_simulated_read_15074089	chr15	-	2195	5	ISM	ENSMUSG00000036061.11	ENSMUST00000229371.2	3882	7	2389	1424	2389	-1407	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTCTGTTCACGTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	103073130	103063140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_103064629_103066043_103066346_103066583_103066655_103071698_103071865_103072962
ONT_simulated_read_15075114	chr7	+	1112	7	ISM	ENSMUSG00000002409.19	ENSMUST00000172761.8	2018	11	0	1799	0	-1799	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTATGACCTGGCCATTGA	NA	NA	NA	NA	NA	NA	NA	NA	27878918	27884549	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_27879066_27880933_27881098_27881785_27881906_27882003_27882193_27882488_27882637_27883665_27883953_27884492
ONT_simulated_read_15075857	chr12	+	1498	11	FSM	ENSMUSG00000042472.12	ENST00000540593.5	1520	11	22	0	-5	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGTTGTCTGATCCCA	NA	NA	NA	NA	NA	NA	NA	NA	84363832	84389824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
ONT_simulated_read_15077085	chr11	-	1677	1	ISM	ENSMUSG00000020546.15	ENSMUST00000143203.8	5985	18	157415	2501	157396	-2501	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGATCTTAGGATGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	90371495	90369818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_90369800_90371500
ONT_simulated_read_15078140	chr18	+	521	4	ISM	ENSMUSG00000117783.2	ENSMUST00000236106.2	937	6	8021	0	8021	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATCTCCATCTATCTCC	NA	NA	NA	NA	NA	NA	NA	NA	83381730	83386270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_83381799_83385018_83385238_83385879_83385988_83386144
ONT_simulated_read_15078197	chr17	-	1436	13	ISM	ENSMUSG00000023977.16	ENSMUST00000113335.4	5691	47	53806	10855	53782	-10855	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGAGGAGCGTCCGGGC	NA	NA	NA	NA	NA	NA	NA	NA	47267652	47252029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_47252061_47253645_47253737_47254262_47254399_47255433_47255502_47255716_47255814_47255971_47256028_47256943_47257093_47259498_47259578_47262807_47262912_47264823_47264986_47265795_47265890_47266707_47266908_47267483
ONT_simulated_read_15078571	chr5	-	1138	8	ISM	ENSMUSG00000025534.18	ENSMUST00000026613.14	2687	12	2980	1067	2796	-1067	internal_fragment	TRUE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTAAAGAATACGTGGTCGG	NA	NA	NA	NA	NA	NA	NA	NA	130028910	130018918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767
ONT_simulated_read_15080574	chr17	-	684	1	ISM	ENSMUSG00000023909.5	ENSMUST00000024702.5	2575	3	2420	1109	2420	-1109	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTAACCTGTGAGAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	23956952	23956268	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_23956300_23957000
ONT_simulated_read_15081053	chr14	+	1383	10	ISM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	50	4492	50	-4492	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGAAGACCTGGCCATGTT	NA	NA	NA	NA	NA	NA	NA	NA	30271137	30292185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159
ONT_simulated_read_1508308	chr16	-	508	1	FSM	ENSMUSG00000102101.2	ENSMUST00000186480.2	1350	1	0	842	0	-842	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCGTCAGGTAGCGCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	55794980	55794472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_55794500_55795000
ONT_simulated_read_15084965	chr11	-	441	1	Antisense	novelGene_ENSMUSG00000017715.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTGTCAGACTGATAGC	NA	NA	NA	NA	NA	NA	NA	NA	117877732	117877291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr11_-_117877300_117877700
ONT_simulated_read_15085293	chr16	-	928	1	ISM	ENSMUSG00000052516.20	ENSMUST00000117785.9	8591	28	515181	3042	151124	-112	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATTAAGTCAGACTATAAC	NA	NA	NA	NA	NA	NA	NA	NA	73692696	73691768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_73691800_73692700
ONT_simulated_read_15085953	chr10	-	358	4	ISM	ENSMUSG00000020130.10	ENST00000550746.5	3259	18	42497	1269	42488	-1269	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGAAAATGTTGGCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	115044884	115035598	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801
ONT_simulated_read_15086866	chr17	-	897	7	ISM	ENSMUSG00000042625.17	ENSMUST00000075510.12	3277	21	16970	612	16970	-612	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAACATGACGGGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	56874615	56870550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56870625_56871503_56871635_56872218_56872262_56872944_56873083_56873325_56873617_56873878_56874016_56874532
ONT_simulated_read_15086991	chr8	+	1419	9	ISM	ENSMUSG00000031785.17	ENSMUST00000093271.8	3574	14	21827	1091	21827	-1091	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGAAGGCGTAGGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	95732825	95739736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_95732960_95733449_95733567_95733897_95733944_95734192_95734297_95734998_95735118_95736133_95736403_95737129_95737239_95738172_95738442_95739484
ONT_simulated_read_15087029	chr10	+	1541	7	ISM	ENSMUSG00000034889.9	ENSMUST00000050867.8	2715	9	0	1362	0	-1362	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCAAGATGTTCTTAGAC	NA	NA	NA	NA	NA	NA	NA	NA	81156936	81160714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_81157281_81158271_81158840_81158954_81159101_81159452_81159616_81159743_81159859_81160136_81160330_81160702
ONT_simulated_read_15089665	chr17	-	1705	13	ISM	ENSMUSG00000040356.17	ENSMUST00000046022.16	3951	28	3571	1907	3571	-1907	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCCAAGGGACAAGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	35065615	35060126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_35060195_35060417_35060523_35060646_35060785_35060919_35061058_35061787_35062019_35063313_35063425_35063590_35063804_35063979_35064077_35064143_35064291_35064624_35064732_35064803_35064889_35065002_35065150_35065497
ONT_simulated_read_15090270	chr6	-	912	5	ISM	ENSMUSG00000041540.17	ENSMUST00000111748.8	1734	8	85600	444	85600	-183	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACAAGCCAACTGATAAGG	NA	NA	NA	NA	NA	NA	NA	NA	143807232	143779004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_143779294_143780921_143781139_143786899_143787074_143790461_143790571_143807109
ONT_simulated_read_15091331	chr9	+	1645	10	ISM	ENSMUSG00000006932.18	ENSMUST00000178812.9	2702	15	0	3939	0	-3939	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTTGCCCAGCAAATCAT	NA	NA	NA	NA	NA	NA	NA	NA	120762637	120784907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_120762683_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879
ONT_simulated_read_15094905	chr3	-	1745	1	ISM	ENSMUSG00000028176.14	ENST00000651989.2	7175	27	477224	147	368256	106	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGTAGTCTTATAGACTT	NA	NA	NA	NA	NA	NA	NA	NA	157790170	157788425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_157788400_157790200
ONT_simulated_read_15096363	chr17	+	904	6	ISM	ENSMUSG00000052712.18	ENSMUST00000234773.2	1367	9	0	7150	0	-7146	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCCTGAGAGGTGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	29488696	29513351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_29488830_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248
ONT_simulated_read_15096678	chr19	-	3161	23	ISM	ENSMUSG00000024960.10	ENSMUST00000025912.10	4257	31	5051	229	4995	-229	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTCCTGGGACCTCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	6942131	6931309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6931668_6931748_6931836_6932072_6932131_6932208_6932299_6932391_6932469_6932574_6932726_6933081_6933275_6933390_6933427_6933514_6933669_6934994_6935087_6935265_6935371_6935453_6935554_6936163_6936326_6936418_6936574_6937155_6937281_6937500_6937586_6937659_6937757_6939242_6939452_6940060_6940248_6940329_6940415_6940581_6940823_6941740_6941888_6941964
ONT_simulated_read_15097284	chr19	-	953	1	ISM	ENSMUSG00000061451.14	ENSMUST00000077066.8	4006	2	2471	2778	2427	-2778	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAGCTACTCGGAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	5133088	5132135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5132100_5133100
ONT_simulated_read_15098811	chr4	-	192	1	Genic_Genomic	ENSMUSG00000078552.11	novel	NA	NA	NA	NA	5914	182	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAAATCCTTTTAATGCTT	NA	NA	NA	NA	NA	NA	NA	NA	129502133	129501941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr4_-_129501900_129502100
ONT_simulated_read_1510037	chr11	+	1882	12	FSM	ENSMUSG00000020271.18	ENST00000393802.6	1920	12	38	0	38	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCCAGCGCTTCCCATGC	NA	NA	NA	NA	NA	NA	NA	NA	32592783	32694753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_32592936_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
ONT_simulated_read_15101361	chr14	-	976	6	ISM	ENSMUSG00000063410.9	ENST00000455035.1	1240	10	-268	5218	133	-5218	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGAAGGGAACTACAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	121616613	121534615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_121534733_121539597_121539756_121540158_121540268_121545426_121545484_121574833_121575065_121616309
ONT_simulated_read_15105205	chr9	-	1371	9	ISM	ENSMUSG00000032254.11	ENST00000395392.6	2636	19	9903	2288	9903	-2288	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAAGCCTGCCTCTAATGT	NA	NA	NA	NA	NA	NA	NA	NA	61834916	61828468	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835
ONT_simulated_read_15105510	chr3	-	721	7	ISM	ENSMUSG00000055436.19	ENSMUST00000072875.15	2654	12	12360	1198	12232	-813	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCCCTAAAACAAAGGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	157725043	157717753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948
ONT_simulated_read_15105588	chr16	-	570	1	NIC	ENSMUSG00000022914.18	novel	8547	42	NA	NA	13801	-1390	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCATGATTTCTTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	95869827	95869257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_95869300_95869800
ONT_simulated_read_15112231	chr9	-	545	1	ISM	ENSMUSG00000032470.18	ENSMUST00000035045.15	4701	6	48909	2508	37424	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGCTGTTGTCTTCTTAA	NA	NA	NA	NA	NA	NA	NA	NA	99270525	99269980	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_99270000_99270500
ONT_simulated_read_15112804	chr4	+	757	1	ISM	ENSMUSG00000043411.16	ENSMUST00000105840.8	5741	27	63255	380	63188	-380	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGGATAACCTTAACTTCT	NA	NA	NA	NA	NA	NA	NA	NA	137384705	137385462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_137384700_137385500
ONT_simulated_read_15115185	chr17	+	677	5	ISM	ENSMUSG00000011589.10	ENSMUST00000011733.9	1748	13	8899	91	7288	-45	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTTTCTGCTGCTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	56302409	56303790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_56302517_56302857_56302938_56303071_56303324_56303420_56303510_56303641
ONT_simulated_read_1511868	chr8	+	467	3	ISM	ENSMUSG00000031556.7	ENSMUST00000033961.7	1281	4	48	2777	-48	-2407	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGAGCCCTGGAGGGAAT	NA	NA	NA	NA	NA	NA	NA	NA	25507274	25510499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_25507609_25508081_25508170_25510454
ONT_simulated_read_15119859	chr7	-	1091	7	ISM	ENSMUSG00000030557.18	ENST00000557785.5	2842	11	104440	1155	104440	-688	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTGACCGGGAGGATCCA	NA	NA	NA	NA	NA	NA	NA	NA	66918149	66884740	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_66884977_66886271_66886399_66890061_66890189_66901404_66901593_66914612_66914673_66915690_66915911_66918016
ONT_simulated_read_151207	chr19	+	795	1	FSM	ENSMUSG00000061387.4	ENSMUST00000080162.2	951	1	0	156	0	-156	mono-exon	FALSE	NA	NA	NA	NA	NA	204	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCATCCCAAGCAAGATCA	NA	NA	NA	NA	NA	NA	NA	NA	13631809	13632604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_13631800_13632600
ONT_simulated_read_15122841	chr1	-	865	1	ISM	ENSMUSG00000026478.15	ENSMUST00000027752.15	7622	28	111073	1927	111073	-1927	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGACTAGGAAGATGAATG	NA	NA	NA	NA	NA	NA	NA	NA	153097459	153096594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_153096600_153097500
ONT_simulated_read_15125016	chr19	-	1586	1	ISM	ENSMUSG00000040451.19	ENSMUST00000099514.10	3665	10	264020	180	86521	-177	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGTGATATTTGTATTGT	NA	NA	NA	NA	NA	NA	NA	NA	32101892	32100306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_32100300_32101900
ONT_simulated_read_15126775	chr7	+	1348	9	ISM	ENSMUSG00000030852.19	ENST00000513429.5	3475	16	12682	13538	12682	-10202	internal_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGGTCCACCGAGGTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	130331112	130352977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130345273_130345415_130346256_130346347_130352919
ONT_simulated_read_15129101	chr5	+	1190	9	ISM	ENSMUSG00000037108.14	ENSMUST00000035852.14	2222	17	23031	0	18968	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGCTTTGTGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	137809090	137820883	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_137809196_137809836_137809913_137810263_137810363_137815154_137815239_137815719_137815787_137816059_137816155_137817225_137817287_137817703_137817839_137820415
ONT_simulated_read_15130790	chr6	-	292	1	NIC	ENSMUSG00000050732.10	novel	820	3	NA	NA	4257	-135	mono-exon	FALSE	NA	NA	NA	NA	NA	182	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGGAGGAGACAGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	72362637	72362345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_72362300_72362600
ONT_simulated_read_15131785	chr7	-	1338	8	ISM	ENSMUSG00000002068.17	ENST00000262643.8	1939	11	4312	219	-2462	-219	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACGCCATGGCGGTTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	37802590	37797628	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_37798063_37798416_37798575_37798671_37798784_37798892_37799028_37799213_37799310_37799979_37800127_37802210_37802347_37802470
ONT_simulated_read_1513332	chr7	-	379	1	ISM	ENSMUSG00000063535.8	ENSMUST00000211240.2	4073	4	6082	3191	6082	411	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACCCAATTTTTTCAGCG	NA	NA	NA	NA	NA	NA	NA	NA	7133641	7133262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_7133300_7133600
ONT_simulated_read_15133658	chr4	-	212	2	ISM	ENSMUSG00000035495.16	ENSMUST00000107770.2	2700	10	2851	16414	2851	-16414	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGGTCAAAACCAAACAAG	NA	NA	NA	NA	NA	NA	NA	NA	46135587	46132145	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_46132157_46135386
ONT_simulated_read_15134427	chr2	-	2090	16	ISM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	14061	1543	14061	-1543	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAATACTCAGATTCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	103613388	103596905	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300
ONT_simulated_read_15135477	chr2	-	4586	7	ISM	ENSMUSG00000034723.12	ENSMUST00000038228.11	5488	8	4308	598	4204	-598	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTATGTATTCTGTGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	134481757	134436702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_134440786_134441929_134441994_134442807_134442910_134451450_134451497_134462474_134462604_134463307_134463354_134481641
ONT_simulated_read_1513593	chr17	-	440	1	ISM	ENSMUSG00000024118.15	ENSMUST00000024930.8	2166	10	4805	492	4805	-492	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTTGGTTTCTTGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	24434959	24434519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24434500_24435000
ONT_simulated_read_15137258	chr4	+	587	1	ISM	ENSMUSG00000046862.15	ENSMUST00000059790.11	3886	5	0	8079	0	-8079	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCACTTGGAGTCCGAGC	NA	NA	NA	NA	NA	NA	NA	NA	143138995	143139582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_143139000_143139600
ONT_simulated_read_15137329	chr10	-	331	3	ISM	ENSMUSG00000000711.4	ENST00000628569.1	496	4	3966	0	3966	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	125	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGTGGCTCGAAGCAAATA	NA	NA	NA	NA	NA	NA	NA	NA	128518813	128515398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128515515_128517254_128517349_128518692
ONT_simulated_read_15141692	chr5	-	624	5	ISM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	15816	305	7540	-305	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGGTTAAGGACAACGC	NA	NA	NA	NA	NA	NA	NA	NA	129848697	129842926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539
ONT_simulated_read_15142207	chr14	+	1111	5	ISM	ENSMUSG00000022139.18	ENST00000397601.5	4228	6	54508	2346	54508	-274	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTTAAGTACCTATTCCA	NA	NA	NA	NA	NA	NA	NA	NA	120616652	120666764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_120616727_120622802_120623004_120626311_120626576_120633862_120634017_120666346
ONT_simulated_read_15142433	chr15	-	556	3	ISM	ENSMUSG00000051359.16	ENST00000395923.5	1618	4	23	2575	23	-225	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGCCGGCCAGTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	37397673	37369092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_37369170_37372359_37372466_37397300
ONT_simulated_read_15144895	chr18	-	1433	9	ISM	ENSMUSG00000048799.9	ENSMUST00000237062.2	3261	20	287	36125	-71	-36125	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTGATTTTGTTCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	53877393	53854691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_53854873_53856154_53856378_53857425_53857654_53860618_53860817_53864162_53864312_53868714_53868857_53871549_53871665_53873123_53873281_53877353
ONT_simulated_read_15151678	chr8	+	1925	7	NIC	ENSMUSG00000031568.17	novel	2921	8	NA	NA	22	-971	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCGTGATGTTTTGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	47986720	48004889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_+_47986979_47990313_47990395_47995726_47995837_47995916_47996065_47997145_47997264_48000823_48000874_48003729
ONT_simulated_read_15152997	chr8	-	521	1	NIC	ENSMUSG00000035439.14	novel	2013	11	NA	NA	131	-21158	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTGGGATCTCAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	71725447	71724926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_71724900_71725400
ONT_simulated_read_15155047	chr19	-	898	1	ISM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	18931	553	18494	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	922	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTCCAGGTCTATACATT	NA	NA	NA	NA	NA	NA	NA	NA	15883492	15882594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_15882600_15883500
ONT_simulated_read_15157254	chr12	-	338	3	ISM	ENSMUSG00000021276.11	ENSMUST00000222457.2	723	5	9302	165	9283	-165	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCACTTGGGAGGCAGAT	NA	NA	NA	NA	NA	NA	NA	NA	110846248	110841632	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_110841711_110843274_110843405_110846118
ONT_simulated_read_15159901	chr5	+	1086	7	ISM	ENSMUSG00000029106.15	ENSMUST00000114340.9	3761	15	40374	1567	12905	-75	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCCCATCCAAAAAGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	34771590	34788085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34787813
ONT_simulated_read_15165477	chr11	-	270	2	ISM	ENSMUSG00000078627.10	ENST00000311269.10	2733	10	86634	164	86634	-164	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCAGCCAGCACAGGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	105255373	105251787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_105252026_105255341
ONT_simulated_read_15169568	chr5	-	2620	10	ISM	ENSMUSG00000038593.19	ENSMUST00000111738.8	5717	14	9894	2353	9894	-2353	3prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGGTTAGGGTTCATAAAG	NA	NA	NA	NA	NA	NA	NA	NA	122392629	122378263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_122379899_122380668_122380789_122383563_122383727_122384547_122384689_122385594_122385681_122385982_122386109_122386911_122387047_122388509_122388531_122389674_122389785_122392546
ONT_simulated_read_1517433	chr7	-	1793	12	ISM	ENSMUSG00000031078.16	ENSMUST00000103079.4	3286	18	14525	665	14261	-665	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTGACACCCCAGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	144010221	143990136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144004714_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177
ONT_simulated_read_1517521	chr5	+	503	1	ISM	ENSMUSG00000079109.12	ENSMUST00000148011.8	5482	15	23071	431	19581	-431	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGGCAGGCATGGAGTGCC	NA	NA	NA	NA	NA	NA	NA	NA	143869852	143870355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_143869900_143870400
ONT_simulated_read_15175889	chr2	-	1103	3	ISM	ENSMUSG00000002458.14	ENSMUST00000108778.8	1427	6	2040	0	2040	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGTTGTTATGGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	181331570	181330296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_181331089_181331169_181331405_181331494
ONT_simulated_read_15177001	chr7	-	695	4	ISM	ENSMUSG00000000605.10	ENSMUST00000210061.2	2445	13	6888	5126	4963	-5079	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCAGCAAGTGGGTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	7294917	7292179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_7292273_7293397_7293585_7294409_7294726_7294818
ONT_simulated_read_15183979	chr2	+	996	1	ISM	ENSMUSG00000027245.12	ENSMUST00000110612.8	4170	5	0	4225	0	-3960	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGCTTTTGGTTCATTT	NA	NA	NA	NA	NA	NA	NA	NA	121283770	121284766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_121283800_121284800
ONT_simulated_read_15186640	chr14	-	347	1	ISM	ENSMUSG00000041594.19	ENSMUST00000037726.14	3416	18	63177	789	58188	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGAAACCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	123157518	123157171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_123157200_123157500
ONT_simulated_read_15190691	chr11	-	961	1	ISM	ENSMUSG00000087050.2	ENSMUST00000150471.2	2429	2	772	921	772	-921	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTTGCATCTCAGATATC	NA	NA	NA	NA	NA	NA	NA	NA	77922719	77921758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_77921800_77922700
ONT_simulated_read_15192387	chr9	+	645	4	NIC	ENSMUSG00000048758.15	novel	710	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGCAGATGACCAGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	106306737	106308707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_106306839_106307174_106307214_106307506_106307572_106308267
ONT_simulated_read_15193297	chr9	-	569	3	ISM	ENSMUSG00000032470.18	ENSMUST00000119472.8	1190	6	32863	125	32863	-125	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGCACCAGACAAGCCATGA	NA	NA	NA	NA	NA	NA	NA	NA	99275086	99270156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_99270558_99271785_99271866_99274998
ONT_simulated_read_1519356	chr4	-	1394	10	ISM	ENSMUSG00000029060.18	ENST00000504599.6	2877	18	10	2533	10	-2533	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCAGGTGGCTGCTTACC	NA	NA	NA	NA	NA	NA	NA	NA	155745800	155741742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743350_155743459_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562
ONT_simulated_read_15194240	chr9	-	1869	1	NIC	ENSMUSG00000000168.11	novel	4035	14	NA	NA	22938	-54	mono-exon	FALSE	NA	NA	NA	NA	NA	249	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGTCAAGAACAATTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	50547855	50545986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_50546000_50547900
ONT_simulated_read_15194569	chr1	+	490	3	ISM	ENSMUSG00000025777.9	ENST00000434412.3	1156	7	12863	715	12863	-715	internal_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAAAGGGCCCCAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	17228593	17231591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_17228728_17230147_17230263_17231350
ONT_simulated_read_15195775	chr6	-	1063	1	NIC	ENSMUSG00000059182.9	novel	3382	13	NA	NA	152944	657	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTTGGAGTAAATGGGA	NA	NA	NA	NA	NA	NA	NA	NA	51836551	51835488	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_51835500_51836600
ONT_simulated_read_15198648	chr11	-	1278	5	ISM	ENSMUSG00000049659.16	ENSMUST00000035350.12	3998	9	32855	199	18873	-199	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGCTATGGTTTAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	20658734	20635282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_20636199_20642464_20642589_20648312_20648374_20653710_20653834_20658680
ONT_simulated_read_15199527	chr10	-	367	1	ISM	ENSMUSG00000019989.9	ENSMUST00000020169.9	4253	25	62153	1300	62064	-1300	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTATATACACATATGTGT	NA	NA	NA	NA	NA	NA	NA	NA	24649970	24649603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_24649600_24650000
ONT_simulated_read_15201667	chr4	-	1336	1	ISM	ENSMUSG00000049969.4	ENSMUST00000054776.4	2977	2	16354	1325	16354	-1325	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTTTCTCCAATCTTAT	NA	NA	NA	NA	NA	NA	NA	NA	10991322	10989986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_10990000_10991300
ONT_simulated_read_15202163	chr9	+	1859	10	ISM	ENSMUSG00000032374.15	ENSMUST00000070522.14	3649	19	53122	465	53081	-457	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCTTCTAGTCCCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	92477397	92490016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_92477437_92478388_92478494_92480640_92480767_92482793_92482936_92485000_92485115_92486831_92486898_92487425_92487531_92488560_92488708_92488816_92488943_92489127
ONT_simulated_read_15202912	chr8	-	1714	13	ISM	ENSMUSG00000038225.16	ENSMUST00000209787.2	1833	14	4806	0	-1723	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTAAATTAGTGCCGG	NA	NA	NA	NA	NA	NA	NA	NA	47065437	47031897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404
ONT_simulated_read_15203423	chr8	+	621	3	ISM	ENSMUSG00000031666.16	ENSMUST00000211136.2	4504	21	44917	1097	44881	-1097	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTCCTGAATCCAGCAAC	NA	NA	NA	NA	NA	NA	NA	NA	91841666	91849148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_91841878_91842289_91842455_91848903
ONT_simulated_read_15204863	chr14	-	791	1	ISM	ENSMUSG00000021814.18	ENSMUST00000065504.17	2851	13	23553	530	23331	-513	mono-exon	FALSE	NA	NA	NA	NA	NA	369	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCATGGTAACCAGAATG	NA	NA	NA	NA	NA	NA	NA	NA	20506648	20505857	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20505900_20506600
ONT_simulated_read_15207120	chr11	-	417	1	FSM	ENSMUSG00000049489.6	ENSMUST00000059468.6	1224	1	0	807	0	-807	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCTACGAGACAGCATTG	NA	NA	NA	NA	NA	NA	NA	NA	78642555	78642138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_78642100_78642600
ONT_simulated_read_15208289	chr7	+	587	4	ISM	ENSMUSG00000030774.14	ENSMUST00000033040.12	3065	15	0	46255	0	-45757	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCACAGGCTGTTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	97492141	97515333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_97492349_97503642_97503857_97514678_97514780_97515268
ONT_simulated_read_15208297	chr7	-	366	3	ISM	ENSMUSG00000007833.16	ENST00000455361.6	1968	14	7058	3019	7058	-1700	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCCCAGGCCGAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	44796923	44795634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44795714_44796046_44796233_44796822
ONT_simulated_read_15208325	chr7	-	1056	1	ISM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	4787	0	3751	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3647	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGTATGCAATTATT	NA	NA	NA	NA	NA	NA	NA	NA	99128158	99127102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_99127100_99128200
ONT_simulated_read_15209587	chr17	-	917	1	NIC	ENSMUSG00000024026.14	novel	9865	6	NA	NA	18375	-445	mono-exon	FALSE	NA	NA	NA	NA	NA	255	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCGGGAGTCTGGCCTA	NA	NA	NA	NA	NA	NA	NA	NA	30813201	30812284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_30812300_30813200
ONT_simulated_read_15209632	chr5	-	1372	12	ISM	ENSMUSG00000005378.18	ENSMUST00000085984.11	1516	13	492	0	-96	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTCCCTGGCCCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	135093028	135081810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092737_135092776_135092867
ONT_simulated_read_15210660	chr13	-	1412	7	ISM	ENSMUSG00000021713.10	ENST00000538977.5	2009	10	8345	151	8337	-151	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	223	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAAGTAACTGCTTCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	104356993	104342020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_104342156_104343606_104343790_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104353788_104356544
ONT_simulated_read_15212354	chr5	-	555	2	ISM	ENSMUSG00000029287.15	ENST00000370399.6	2946	14	96583	108	96583	-108	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGTAAAGGAGACGGTG	NA	NA	NA	NA	NA	NA	NA	NA	107266362	107257146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_107257624_107266284
ONT_simulated_read_152125	chr2	-	1599	8	ISM	ENSMUSG00000027489.16	ENST00000246190.11	1731	10	967	-22	967	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCCCCTGTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	154396646	154386318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_154387088_154387174_154387267_154387945_154388024_154388147_154388261_154388589_154388801_154388956_154389076_154389344_154389482_154396566
ONT_simulated_read_15213064	chr18	-	1575	18	ISM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	127891	1064	127891	-1064	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACCATAAAAACCATCC	NA	NA	NA	NA	NA	NA	NA	NA	34012081	33930443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964
ONT_simulated_read_15214615	chr7	-	339	1	ISM	ENSMUSG00000030849.19	ENSMUST00000120187.9	4311	16	18	103456	0	-101948	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAAGGAATCGTTCTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	129867975	129867636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_129867600_129868000
ONT_simulated_read_1521482	chr3	-	944	6	ISM	ENSMUSG00000028136.16	ENSMUST00000107283.8	3531	12	63369	1577	42852	1151	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTTGCACTGTTCAAGC	NA	NA	NA	NA	NA	NA	NA	NA	94426487	94408196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_94408579_94409476_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354
ONT_simulated_read_15214857	chr1	+	647	5	ISM	ENSMUSG00000026172.13	ENSMUST00000113732.2	1679	8	1892	267	1892	-202	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGCAAGCACCTTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	74629424	74631081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
ONT_simulated_read_15216168	chr1	-	859	4	ISM	ENSMUSG00000026049.12	ENST00000376019.5	1573	5	8441	71	8441	-68	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTGTCTATAATTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	44130741	44125843	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520
ONT_simulated_read_15216573	chr18	-	1562	1	FSM	ENSMUSG00000117634.2	ENSMUST00000235010.2	2365	1	151	652	151	-652	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATTGGGAACGGAACCT	NA	NA	NA	NA	NA	NA	NA	NA	11790690	11789128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_11789100_11790700
ONT_simulated_read_15217400	chr7	+	1190	8	ISM	ENSMUSG00000015165.17	ENSMUST00000038572.15	2142	13	50	3347	50	-3330	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGGTGAGCTTGCTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	28510364	28518344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28517958_28518068
ONT_simulated_read_15217868	chr4	+	933	8	ISM	ENSMUSG00000029063.17	ENSMUST00000105612.2	2737	10	0	3030	0	-3026	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGTCATTCCGGCCTATC	NA	NA	NA	NA	NA	NA	NA	NA	155666951	155672428	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155667106_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317
ONT_simulated_read_15218392	chrX	-	982	1	ISM	ENSMUSG00000023074.12	ENSMUST00000096447.9	1773	6	24513	0	24513	0	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCCTAAGCACAACGACT	NA	NA	NA	NA	NA	NA	NA	NA	52434866	52433884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_52433900_52434900
ONT_simulated_read_15219513	chr18	-	947	1	FSM	ENSMUSG00000045730.5	ENSMUST00000053640.5	2144	1	0	1197	0	-1197	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGAGCAGGATGGGCGGA	NA	NA	NA	NA	NA	NA	NA	NA	62313030	62312083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_62312100_62313000
ONT_simulated_read_15220383	chr10	-	441	4	ISM	ENSMUSG00000019942.14	ENST00000316629.8	925	6	4980	258	4980	-240	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGCAAAATGGCCCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	69180992	69174393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_69174427_69176310_69176453_69176544_69176709_69180890
ONT_simulated_read_15221240	chr1	+	1699	14	ISM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	73	49082	30	-49082	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATGCACAAGAGACTCAAC	NA	NA	NA	NA	NA	NA	NA	NA	85992413	86017791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715
ONT_simulated_read_1522239	chr9	-	1120	5	ISM	ENSMUSG00000036057.12	ENST00000265562.5	5025	27	18428	3091	18428	-3091	internal_fragment	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACATCGGAGTTGGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	110218833	110217379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_110217720_110217808_110217989_110218079_110218232_110218308_110218464_110218540
ONT_simulated_read_15228037	chr8	+	1557	12	FSM	ENSMUSG00000003808.19	ENST00000423140.6	1560	12	3	0	3	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGGGCAGGGTTCTAAGT	NA	NA	NA	NA	NA	NA	NA	NA	85583648	85595741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
ONT_simulated_read_15231705	chr13	-	443	4	ISM	ENSMUSG00000021764.9	ENSMUST00000022286.8	1698	5	36765	922	36765	-922	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCACTATTTATAGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	114488029	114425252	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_114425403_114444352_114444427_114453392_114453566_114487983
ONT_simulated_read_1523308	chr1	-	295	2	ISM	ENSMUSG00000004451.15	ENSMUST00000004565.15	2289	5	21166	7659	21166	-7659	internal_fragment	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTCCATCACAGAGCAC	NA	NA	NA	NA	NA	NA	NA	NA	119411358	119405693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_119405854_119411223
ONT_simulated_read_15233250	chr13	-	1090	7	ISM	ENSMUSG00000041431.17	ENSMUST00000091295.14	2140	8	582	946	498	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCAATAGACTGCTACATC	NA	NA	NA	NA	NA	NA	NA	NA	100922412	100916185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100921964_100922127_100922240
ONT_simulated_read_15234273	chr14	-	541	1	ISM	ENSMUSG00000021814.18	ENSMUST00000065504.17	2851	13	24332	1	24110	0	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATTTGTATGTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	20505869	20505328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20505300_20505900
ONT_simulated_read_15234814	chr17	+	172	2	ISM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	12	2235	0	-1090	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTTGCGCCGTGATTGCG	NA	NA	NA	NA	NA	NA	NA	NA	29312754	29317461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_29312836_29317370
ONT_simulated_read_15235552	chr16	-	1620	3	ISM	ENSMUSG00000040681.17	ENSMUST00000050884.16	2174	6	526	354	401	-354	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1143	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCAGGCCTGGCTAATGT	NA	NA	NA	NA	NA	NA	NA	NA	95928403	95922171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_95923618_95925922_95926046_95928352
ONT_simulated_read_15235881	chr4	-	613	1	ISM	ENSMUSG00000046671.19	ENSMUST00000102550.10	2025	7	8756	350	6215	-336	mono-exon	FALSE	NA	NA	NA	NA	NA	253	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACATCTGGGCTGCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	134253823	134253210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_134253200_134253800
ONT_simulated_read_15237145	chr11	-	2813	9	ISM	ENSMUSG00000010803.14	ENST00000637827.1	1788	10	631	-1211	631	-1090	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	414	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTGAGTAATATTATTACA	NA	NA	NA	NA	NA	NA	NA	NA	42070455	42022855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_42024618_42026234_42026438_42031075_42031229_42037916_42038061_42044160_42044244_42045635_42045857_42053380_42053449_42066728_42066839_42070386
ONT_simulated_read_15237708	chr11	-	454	3	ISM	ENSMUSG00000039096.11	ENSMUST00000040487.4	4143	9	4436	3859	4436	-3859	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGCACGGATCCAGACAC	NA	NA	NA	NA	NA	NA	NA	NA	94435589	94434482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_94434529_94434930_94434995_94435245
ONT_simulated_read_15239531	chr2	-	895	1	ISM	ENSMUSG00000026889.13	ENSMUST00000028251.10	2617	6	18811	989	18649	558	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTAACCCGGGTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	36007974	36007079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_36007100_36008000
ONT_simulated_read_15241055	chr5	-	3954	1	ISM	ENSMUSG00000041298.16	ENSMUST00000047257.15	6157	11	52343	767	52343	-767	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATTTGCATAGTGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	148813114	148809160	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_148809200_148813100
ONT_simulated_read_15241141	chr11	-	749	7	ISM	ENSMUSG00000040667.12	ENSMUST00000108530.2	2389	17	24593	150	24593	-150	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAATGAACATAACTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	70836187	70834077	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028
ONT_simulated_read_15243737	chr4	-	275	2	ISM	ENSMUSG00000028494.13	ENSMUST00000000466.13	1888	8	7874	3683	7874	-3683	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATTTGATATGGTTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	86580423	86578484	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_86578507_86580170
ONT_simulated_read_15245362	chr5	+	391	1	ISM	ENSMUSG00000029723.17	ENSMUST00000100540.10	2730	6	266	22064	0	-13046	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCTCGGTGGCCGAGG	NA	NA	NA	NA	NA	NA	NA	NA	137744257	137744648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_137744300_137744600
ONT_simulated_read_1524558	chr7	+	619	4	ISM	ENSMUSG00000011096.18	ENSMUST00000054343.15	1592	5	71	1385	71	-700	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCGGTGCCAGTGTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	44498718	44503460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_44498773_44501994_44502384_44503203_44503282_44503362
ONT_simulated_read_15246909	chr15	-	1092	10	ISM	ENSMUSG00000022610.11	ENSMUST00000088827.8	1808	12	3177	297	2825	-297	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGGGACTAGCCTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	89021647	89015083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_89015422_89016697_89016872_89016955_89017035_89017103_89017184_89017281_89017354_89018814_89018930_89019325_89019374_89019629_89019660_89019779_89019892_89021603
ONT_simulated_read_15249578	chr11	-	1427	6	ISM	ENSMUSG00000020682.18	ENSMUST00000108137.9	2451	8	11501	617	11391	568	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAGCCCCTGGACTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	83342396	83333318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_83333772_83334584_83334753_83335036_83335187_83335646_83335893_83338345_83338571_83342211
ONT_simulated_read_1525128	chr13	-	1003	1	ISM	ENSMUSG00000041747.4	ENSMUST00000040972.4	4120	13	13690	1504	11614	877	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTGTCCTTCACTT	NA	NA	NA	NA	NA	NA	NA	NA	98385859	98384856	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_98384900_98385900
ONT_simulated_read_15252121	chr8	-	342	1	FSM	ENSMUSG00000060019.7	ENSMUST00000073722.7	342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTGCTTTTGTTAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	107299982	107299640	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_107299600_107300000
ONT_simulated_read_15252773	chr3	+	1593	12	ISM	ENSMUSG00000028256.17	ENSMUST00000029920.15	2239	15	9237	159	-7766	-155	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAGAATTATTCTTATG	NA	NA	NA	NA	NA	NA	NA	NA	144833617	144859491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ONT_simulated_read_1525363	chr2	-	390	1	ISM	ENSMUSG00000039826.14	ENSMUST00000048044.12	3408	8	10550	1453	9670	194	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAATGAGATCAGGGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	29667964	29667574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_29667600_29668000
ONT_simulated_read_15253793	chr12	-	1932	1	ISM	ENSMUSG00000021114.10	ENSMUST00000021536.9	3667	9	18035	947	17955	-947	mono-exon	FALSE	NA	NA	NA	NA	NA	536	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGACTCATGTGAACT	NA	NA	NA	NA	NA	NA	NA	NA	78890377	78888445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_78888400_78890400
ONT_simulated_read_15254030	chr6	-	717	1	ISM	ENSMUSG00000046806.14	ENSMUST00000055097.11	3681	4	5283	251	5271	-182	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTGCCTCCTTCCCCG	NA	NA	NA	NA	NA	NA	NA	NA	34849673	34848956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_34849000_34849700
ONT_simulated_read_15254123	chr11	+	279	1	NIC	ENSMUSG00000020781.15	novel	1979	11	NA	NA	6090	-1660	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGGTGGGACCTATATAG	NA	NA	NA	NA	NA	NA	NA	NA	115711671	115711950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_115711700_115712000
ONT_simulated_read_15254886	chr14	-	1359	10	ISM	ENSMUSG00000021870.18	ENSMUST00000090359.11	4076	22	90963	1396	90963	-500	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGCAAAGTGCAAGAATAC	NA	NA	NA	NA	NA	NA	NA	NA	26163810	26135950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_26136144_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729
ONT_simulated_read_15256028	chr6	-	708	3	ISM	ENSMUSG00000030034.13	ENSMUST00000032109.5	1038	5	632	90	632	-90	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTTGCAGCCTACAGTG	NA	NA	NA	NA	NA	NA	NA	NA	83101378	83098898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_83099346_83100974_83101145_83101287
ONT_simulated_read_15256243	chr11	-	352	2	ISM	ENSMUSG00000017747.14	ENST00000428494.6	1703	8	599	2475	599	-2475	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGATGGTGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	100660583	100660105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100660356_100660481
ONT_simulated_read_15256793	chrX	-	216	1	FSM	ENSMUSG00000083621.2	ENSMUST00000119571.2	408	1	0	192	0	-192	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCAGGAAGAAGAGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	51861626	51861410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_51861400_51861600
ONT_simulated_read_15257450	chr5	+	907	4	ISM	ENSMUSG00000063646.19	ENSMUST00000121010.9	2496	20	0	46164	0	-23460	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTAGAGGACAGGAACACC	NA	NA	NA	NA	NA	NA	NA	NA	37242713	37259181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_37242843_37248470_37248966_37257979_37258190_37259108
ONT_simulated_read_15260349	chr13	-	891	1	FSM	ENSMUSG00000049233.8	ENSMUST00000061241.8	586	1	0	-305	0	305	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATTGTCAAGTGTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	107551229	107550338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_107550300_107551200
ONT_simulated_read_15260419	chr6	-	1527	1	ISM	ENSMUSG00000045962.17	ENSMUST00000060043.13	10575	28	112007	1170	37068	-518	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAACGAGATCTAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	119903626	119902099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_119902100_119903600
ONT_simulated_read_15262390	chr11	+	442	5	ISM	ENSMUSG00000010358.14	ENSMUST00000010502.13	1362	7	163	1044	162	-739	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTTTTCCTGCTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	101339395	101348480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_101339449_101347391_101347491_101348015_101348164_101348241_101348349_101348445
ONT_simulated_read_15263647	chr13	+	656	5	ISM	ENSMUSG00000054728.18	ENST00000675203.1	2162	13	116	75723	116	-75594	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCTGGAGTCCTCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	43070126	43213071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_43070344_43110092_43110258_43190925_43191007_43210654_43210823_43213046
ONT_simulated_read_15266927	chr2	-	644	1	ISM	ENSMUSG00000041777.13	ENSMUST00000058615.10	2821	10	27690	1263	27690	-1263	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCTGAGCGCCCAGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	73115355	73114711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_73114700_73115400
ONT_simulated_read_15267075	chr10	-	2285	16	NNC	ENSMUSG00000020115.4	novel	2700	18	NA	NA	6697	-99	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	188	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCATTGTTTAAACTATT	NA	NA	NA	NA	NA	NA	NA	NA	121407930	121382513	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_121383094_121387391_121387499_121388104_121388198_121388312_121388415_121388933_121388974_121389649_121389727_121389807_121389930_121391891_121391971_121393106_121393209_121395751_121395844_121396145_121396205_121397481_121397679_121399830_121400011_121403933_121404045_121406535_121406697_121407747
ONT_simulated_read_15267924	chr6	-	1754	4	ISM	ENSMUSG00000036667.15	ENSMUST00000045140.5	5256	8	6100	6489	6100	-4143	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGACAAGGGCCAGCAAGC	NA	NA	NA	NA	NA	NA	NA	NA	42663893	42654451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_42654478_42655003_42655102_42655359_42656355_42663258
ONT_simulated_read_15268372	chr18	+	629	1	FSM	ENSMUSG00000085172.2	ENSMUST00000153606.2	772	1	0	143	0	-143	mono-exon	FALSE	NA	NA	NA	NA	NA	256	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCACACTAACAAGAGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	36743010	36743639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_36743000_36743600
ONT_simulated_read_15270920	chr10	-	1089	6	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	14144	96134	14144	-96134	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGAGTGCCTCTTAAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	75586006	75578079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_75578297_75579035_75579173_75581062_75581232_75582321_75582609_75583659_75583810_75585877
ONT_simulated_read_15273050	chr2	-	213	1	ISM	ENSMUSG00000027375.15	ENSMUST00000028854.15	2778	4	21641	1616	21079	32	mono-exon	FALSE	NA	NA	NA	NA	NA	557	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGCCATATTCAAGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	127476974	127476761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_127476800_127477000
ONT_simulated_read_15273673	chr4	-	920	1	ISM	ENSMUSG00000028675.13	ENSMUST00000030436.12	1919	3	1421	592	632	-592	mono-exon	FALSE	NA	NA	NA	NA	NA	385	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACATGTAATAAGCTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	135599740	135598820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_135598800_135599700
ONT_simulated_read_15274299	chr13	-	1175	10	ISM	ENSMUSG00000006191.18	ENSMUST00000006353.14	2629	16	146530	834	146519	-834	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTCCCAGTATGACTGC	NA	NA	NA	NA	NA	NA	NA	NA	29893127	29510117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_29510212_29538612_29538778_29541482_29541567_29627990_29628054_29658511_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077
ONT_simulated_read_15274702	chr6	-	360	1	NIC	ENSMUSG00000071477.11	novel	3111	6	NA	NA	22295	-1255	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGGCTGAAGATTAACCT	NA	NA	NA	NA	NA	NA	NA	NA	48002753	48002393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_48002400_48002800
ONT_simulated_read_15275578	chr4	-	1658	10	ISM	ENSMUSG00000028452.8	ENST00000417448.2	3305	17	13722	462	13722	-462	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGGAGGGGGCGCTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	42986280	42980481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145
ONT_simulated_read_15276624	chr12	-	1301	10	ISM	ENSMUSG00000035021.14	ENST00000360310.6	5659	27	11005	34079	10984	-34079	internal_fragment	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGGCGATGGCTGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	55022137	54974414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_54974496_54976311_54976451_54977036_54977133_54981524_54981692_54982266_54982367_54988286_54988422_54990761_54990850_54993586_54993689_55001482_55001627_55021888
ONT_simulated_read_1527879	chr7	-	484	5	ISM	ENSMUSG00000051007.16	ENST00000524550.5	553	6	2196	0	2196	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	243	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCTCCCGGGCAAGGGT	NA	NA	NA	NA	NA	NA	NA	NA	140991786	140989000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_140989114_140989243_140989338_140989758_140989854_140990898_140991005_140991710
ONT_simulated_read_15279206	chr5	+	483	1	FSM	ENSMUSG00000081071.2	ENSMUST00000117132.2	216	1	0	-267	0	267	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTGGGTTTGTGAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	24461819	24462302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_24461800_24462300
ONT_simulated_read_15281435	chr9	-	268	1	FSM	ENSMUSG00000111027.2	ENSMUST00000213947.2	694	1	0	426	0	-426	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATGGATGCAAAAGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	74969329	74969061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_74969100_74969300
ONT_simulated_read_15282113	chr3	-	2249	1	ISM	ENSMUSG00000045092.9	ENSMUST00000055676.4	3046	2	1993	398	636	-253	mono-exon	FALSE	NA	NA	NA	NA	NA	1422	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTGTTTAAAGAACATT	NA	NA	NA	NA	NA	NA	NA	NA	115506728	115504479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_115504500_115506700
ONT_simulated_read_15284070	chr9	+	932	2	ISM	ENSMUSG00000074001.4	ENSMUST00000098272.4	2370	6	449	3752	449	-3752	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGCTACGACAGGCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	121607205	121609132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_121607994_121608988
ONT_simulated_read_15288105	chr11	-	649	1	ISM	ENSMUSG00000041189.10	ENSMUST00000045971.9	2155	11	11207	52	11207	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATCGCCTACAATTGCA	NA	NA	NA	NA	NA	NA	NA	NA	69675562	69674913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69674900_69675600
ONT_simulated_read_15289982	chr2	-	244	2	ISM	ENSMUSG00000027544.17	ENSMUST00000029057.13	2310	7	22905	17212	22905	-17212	internal_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGGATCACTGGGAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	168409206	168378229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_168378326_168409058
ONT_simulated_read_15290239	chr2	-	626	1	FSM	ENSMUSG00000096006.2	ENSMUST00000178049.2	1316	1	0	690	0	-690	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATATTGCTGCCTACAGA	NA	NA	NA	NA	NA	NA	NA	NA	113751486	113750860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_113750900_113751500
ONT_simulated_read_15292288	chr19	-	920	1	ISM	ENSMUSG00000075289.6	ENSMUST00000167055.2	3968	10	8961	1275	8961	-1275	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGTCCCAGCACCTACA	NA	NA	NA	NA	NA	NA	NA	NA	4216517	4215597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4215600_4216500
ONT_simulated_read_15293404	chr10	-	1885	1	ISM	ENSMUSG00000025417.9	ENSMUST00000013970.9	3307	10	12420	184	12412	-184	mono-exon	FALSE	NA	NA	NA	NA	NA	208	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCCCCTGTTGAATGCAA	NA	NA	NA	NA	NA	NA	NA	NA	127035004	127033119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_127033100_127035000
ONT_simulated_read_1529362	chr14	-	475	4	ISM	ENSMUSG00000061244.15	ENSMUST00000161504.8	2582	17	48841	527	48841	-527	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTAAAACAAGTCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	49255012	49251738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_49251807_49252873_49253090_49253654_49253764_49254930
ONT_simulated_read_15293804	chr3	-	389	1	ISM	ENSMUSG00000050931.8	ENSMUST00000090246.5	5801	6	2481	23079	2481	-23079	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATACCCGGACTACATC	NA	NA	NA	NA	NA	NA	NA	NA	131136101	131135712	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_131135700_131136100
ONT_simulated_read_15295263	chr17	-	1029	6	ISM	ENSMUSG00000004865.17	ENSMUST00000130643.9	4653	16	22839	2337	22581	-2337	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTCAGGGCAAAGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	28818844	28808958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444
ONT_simulated_read_15295348	chr2	+	414	5	ISM	ENSMUSG00000026718.18	ENSMUST00000028050.14	3981	13	54858	6213	54858	-6213	internal_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACCTCTCATTGATGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	14133857	14142963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_14133983_14135834_14135930_14139163_14139253_14142297_14142386_14142946
ONT_simulated_read_15295664	chr10	+	175	1	ISM	ENSMUSG00000019857.8	ENSMUST00000020004.8	2201	4	12037	62	11232	-62	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCAGTTCATAGATTTTA	NA	NA	NA	NA	NA	NA	NA	NA	53485084	53485259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_53485100_53485300
ONT_simulated_read_15295681	chr5	+	536	4	ISM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	8817	370	8817	-370	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATATTTAAAGAAAATCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	122519330	122520595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_122519369_122519460_122519558_122520110_122520240_122520323
ONT_simulated_read_15296416	chr11	-	828	1	ISM	ENSMUSG00000019590.17	ENSMUST00000019734.11	2741	6	8874	1009	8601	373	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACAGTGAGGGCTGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	105826364	105825536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_105825500_105826400
ONT_simulated_read_15296770	chr10	+	627	4	ISM	ENSMUSG00000037542.14	ENST00000367847.2	1316	6	6	6584	6	-6584	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTGAGGATGCCAACCT	NA	NA	NA	NA	NA	NA	NA	NA	21253245	21265157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_21253378_21256728_21256877_21258190_21258347_21264966
ONT_simulated_read_15296942	chrX	-	686	1	ISM	ENSMUSG00000051579.11	ENSMUST00000163584.8	2358	4	1228	1354	1228	-257	mono-exon	FALSE	NA	NA	NA	NA	NA	708	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTACAGTGCTTATTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	135071772	135071086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_135071100_135071800
ONT_simulated_read_15299186	chr19	-	1225	9	ISM	ENSMUSG00000118668.1	ENSMUST00000239527.1	3140	17	2973	1438	2973	-1438	internal_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCCTGGACGGGGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	6815031	6808015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6808115_6808358_6808554_6808641_6808816_6809135_6809230_6809318_6809453_6809623_6809753_6812468_6812634_6814694_6814846_6814947
ONT_simulated_read_15304848	chr7	-	2142	14	ISM	ENSMUSG00000051910.14	ENSMUST00000166207.3	2825	16	68846	366	47451	-212	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	236	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTAATGGAGAGGATGAAA	NA	NA	NA	NA	NA	NA	NA	NA	115376494	115076258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_115076457_115085782_115086000_115088897_115089132_115111895_115112005_115140856_115141042_115143704_115143889_115149244_115149395_115178250_115178374_115179799_115179880_115196730_115196852_115258750_115258820_115261506_115261680_115300930_115301021_115376285
ONT_simulated_read_15310857	chr11	-	275	1	ISM	ENSMUSG00000035042.3	ENSMUST00000035938.3	532	3	4466	0	4466	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCTCCTAGTGTGACTT	NA	NA	NA	NA	NA	NA	NA	NA	83416878	83416603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_83416600_83416900
ONT_simulated_read_15312890	chr1	+	994	4	ISM	ENSMUSG00000026031.16	ENSMUST00000114309.8	2010	5	0	1981	0	-1981	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAGACTTGAACACAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	58752452	58770405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_58752819_58765464_58765892_58768214_58768321_58770310
ONT_simulated_read_15314846	chr18	-	1155	3	ISM	ENSMUSG00000033016.17	ENSMUST00000236310.2	4315	10	58209	1185	58209	-802	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	333	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTCAGCCCCCTCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	80693179	80650604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_80651241_80678905_80679292_80693046
ONT_simulated_read_1531622	chr4	-	1186	4	ISM	ENSMUSG00000028901.14	ENSMUST00000030733.9	2485	9	19708	652	19708	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAACAAA	NA	NA	NA	NA	NA	NA	NA	NA	131959455	131952981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322
ONT_simulated_read_15316302	chr3	+	685	1	NIC	ENSMUSG00000074182.9	novel	1127	11	NA	NA	42	-23606	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCGAGTGGGCAGCAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	145282028	145282713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_+_145282000_145282700
ONT_simulated_read_15317404	chr5	-	255	2	ISM	ENSMUSG00000037344.15	ENSMUST00000039991.14	3330	14	12060	1169	11142	-1169	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGTCGCCAGCCCTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	137319799	137313988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137314100_137319655
ONT_simulated_read_15317422	chr6	-	206	1	ISM	ENSMUSG00000030032.15	ENSMUST00000153148.8	4634	10	3508	3324	3508	25	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCACACCAAGCTCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	83129871	83129665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_83129700_83129900
ONT_simulated_read_15318377	chr14	+	560	4	ISM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	11378	214	11297	-214	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTGTTTGGACACCACTCA	NA	NA	NA	NA	NA	NA	NA	NA	29711671	29714962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_29711758_29712660_29712926_29713548_29713713_29714917
ONT_simulated_read_15319917	chr18	+	488	4	ISM	ENSMUSG00000042660.9	ENSMUST00000049323.9	1619	7	0	1418	0	-1418	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGTTACGGGGGACGAC	NA	NA	NA	NA	NA	NA	NA	NA	36893272	36895445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407
ONT_simulated_read_15320045	chr7	+	485	5	ISM	ENSMUSG00000025503.6	ENSMUST00000026576.5	1229	8	44	1343	44	-1341	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCCTTCGCCCAGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	140972155	140981538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_140972232_140975961_140976086_140978407_140978516_140980200_140980333_140981493
ONT_simulated_read_15320145	chrX	-	472	4	ISM	ENSMUSG00000031304.19	ENSMUST00000033664.14	1670	8	821	1307	821	-878	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCACCATGGGGTTGATT	NA	NA	NA	NA	NA	NA	NA	NA	100311040	100309290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_100309333_100309786_100309950_100310583_100310727_100310916
ONT_simulated_read_15324274	chr13	-	149	1	ISM	ENSMUSG00000021427.11	ENSMUST00000225246.2	1825	10	26674	730	26600	-157	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTATGAAATTTAGGACAG	NA	NA	NA	NA	NA	NA	NA	NA	38151459	38151310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_38151300_38151500
ONT_simulated_read_15324901	chr19	-	451	2	ISM	ENSMUSG00000025035.10	ENSMUST00000026009.10	843	6	30582	0	30582	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTAAATGTCTCAGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	46530950	46519534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_46519826_46530790
ONT_simulated_read_15325911	chr19	-	1631	13	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	7078	-1279	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCTCTGTGGTTGAATG	NA	NA	NA	NA	NA	NA	NA	NA	27400147	27367376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376501_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053
ONT_simulated_read_15330223	chr12	-	1459	9	ISM	ENSMUSG00000004698.12	ENSMUST00000209667.2	1635	10	90943	137	18	-137	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCAAGGAGGAACCCGTG	NA	NA	NA	NA	NA	NA	NA	NA	34487360	34423962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_34424138_34439243_34439462_34440140_34440352_34443281_34443405_34452750_34452867_34479496_34479619_34481861_34481989_34483079_34483222_34487135
ONT_simulated_read_1533564	chr7	-	291	3	ISM	ENSMUSG00000003190.13	ENSMUST00000003290.12	1075	7	914	2968	897	-1318	internal_fragment	FALSE	canonical	NA	NA	NA	NA	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACCAAAAGGTGACCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	44646089	44643613	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44643696_44643786_44643874_44645967
ONT_simulated_read_15336705	chr11	-	149	2	ISM	ENSMUSG00000035441.15	ENSMUST00000070997.6	3106	21	105312	87144	105312	-87144	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGGCATCATTGCAATC	NA	NA	NA	NA	NA	NA	NA	NA	80565539	80561796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_80561846_80565439
ONT_simulated_read_15338535	chr6	+	710	5	FSM	ENSMUSG00000034245.11	ENST00000404040.5	739	5	47	-18	47	18	multi-exon	FALSE	canonical	NA	NA	NA	NA	944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATACCTGCCCCCCCACC	NA	NA	NA	NA	NA	NA	NA	NA	91134429	91150265	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_91134528_91136142_91136244_91146376_91146474_91149146_91149326_91150030
ONT_simulated_read_15340042	chr14	-	825	2	ISM	ENSMUSG00000022023.7	ENSMUST00000022601.7	3704	10	15201	1505	15201	-1505	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTACTCCATTTAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	79703759	79698881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_79699570_79703622
ONT_simulated_read_153403	chr4	-	1233	2	ISM	ENSMUSG00000040738.11	ENST00000523731.6	4438	28	45306	390	45306	-390	internal_fragment	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGGGAGTGAAGTCACC	NA	NA	NA	NA	NA	NA	NA	NA	11208852	11203377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_11204584_11208825
ONT_simulated_read_15341463	chr2	-	632	4	ISM	ENSMUSG00000026835.16	ENST00000371806.4	832	7	3238	0	3238	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCTAGCTTCCCACACAG	NA	NA	NA	NA	NA	NA	NA	NA	27969760	27966594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_27966835_27968258_27968394_27969133_27969264_27969633
ONT_simulated_read_15343415	chr9	-	547	3	ISM	ENSMUSG00000023249.16	ENSMUST00000112479.9	2030	11	1800	3078	1507	-3078	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGCTGGTGAGGGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	106352068	106351265	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_106351484_106351595_106351735_106351878
ONT_simulated_read_15344175	chr10	-	1875	8	ISM	ENSMUSG00000020329.13	ENST00000578759.1	2746	14	-374	2350	-374	-2350	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGCTGTATGCCCTTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	79579541	79575446	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_79575766_79575977_79576200_79576412_79576584_79576666_79576832_79576960_79577111_79577541_79577729_79577821_79577953_79579011
ONT_simulated_read_15344289	chr3	-	557	1	ISM	ENSMUSG00000074513.10	ENST00000451320.6	2968	9	84828	1263	84627	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCATGTTTGTGTATTA	NA	NA	NA	NA	NA	NA	NA	NA	84405165	84404608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_84404600_84405200
ONT_simulated_read_15348263	chr6	-	719	5	ISM	ENSMUSG00000040649.16	ENST00000619374.4	1321	8	8578	5283	2326	387	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATACTTTCCTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	122441168	122429672	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_122429723_122433476_122433623_122436050_122436255_122437919_122438007_122440936
ONT_simulated_read_15351272	chr9	+	661	6	ISM	ENSMUSG00000002825.9	ENSMUST00000002902.8	1316	10	34	1960	34	-1960	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCGGAGGTCTGAGTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	21323166	21329610	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579
ONT_simulated_read_1535148	chr5	+	2104	9	NNC	ENSMUSG00000025858.13	novel	2107	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTAGTCCTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	139238078	139255806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_+_139238375_139248235_139248315_139248627_139248707_139249233_139249384_139251381_139251521_139252758_139252900_139252981_139253058_139253157_139253231_139254735
ONT_simulated_read_15352871	chr3	-	602	1	NIC	ENSMUSG00000027882.19	novel	2419	19	NA	NA	46645	-76	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATGTTTGAGATCATGT	NA	NA	NA	NA	NA	NA	NA	NA	108701181	108700579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_108700600_108701200
ONT_simulated_read_1535647	chr7	-	521	1	ISM	ENSMUSG00000063550.9	ENSMUST00000210682.2	6694	33	89512	746	89203	-742	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTAGGGAATTCTTTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	101769871	101769350	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_101769400_101769900
ONT_simulated_read_15360800	chr4	-	1024	9	ISM	ENSMUSG00000033191.15	ENSMUST00000047421.6	4091	23	11510	1447	8113	-1244	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTATGAGCGCCCCCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	118335748	118329834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_118329869_118329988_118330086_118330164_118330206_118331306_118331378_118331496_118331611_118332620_118332812_118333007_118333119_118333256_118333468_118335594
ONT_simulated_read_15363262	chr2	+	1153	9	ISM	ENSMUSG00000027469.17	ENSMUST00000028969.9	3654	18	87	13589	87	-13589	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCCTCACAGATGAGCGA	NA	NA	NA	NA	NA	NA	NA	NA	152690001	152722985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_152690218_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934
ONT_simulated_read_153693	chr6	+	644	6	ISM	ENSMUSG00000004633.18	ENSMUST00000046856.14	2418	13	466	80019	466	-79542	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGCCCAGGGCACGG	NA	NA	NA	NA	NA	NA	NA	NA	54017023	54197687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_54017141_54150448_54150488_54171010_54171067_54192646_54192679_54195508_54195623_54197401
ONT_simulated_read_15370504	chr7	-	730	6	ISM	ENSMUSG00000030655.16	ENST00000522841.6	1697	11	6037	2597	6037	-2575	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTTTCTGAGGCTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	117806238	117795214	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_117795259_117797413_117797588_117799883_117799982_117801752_117801826_117802226_117802353_117806023
ONT_simulated_read_1537226	chr3	-	464	1	FSM	ENSMUSG00000045327.8	ENSMUST00000159536.2	1102	1	0	638	0	-638	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGTATACCATAGACTTA	NA	NA	NA	NA	NA	NA	NA	NA	96516041	96515577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_96515600_96516000
ONT_simulated_read_15373758	chr7	+	228	1	ISM	ENSMUSG00000025481.13	ENSMUST00000211372.2	688	4	2467	0	2442	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATCTGAACCTATCATT	NA	NA	NA	NA	NA	NA	NA	NA	140417651	140417879	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_140417700_140417900
ONT_simulated_read_15375308	chr3	-	755	6	ISM	ENSMUSG00000028064.18	ENST00000355014.6	2827	13	2509	2568	2509	-2568	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCTCAGGACAGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	88357918	88345844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_88345869_88348004_88348186_88355297_88355449_88356986_88357160_88357294_88357420_88357817
ONT_simulated_read_15385225	chr1	-	581	1	ISM	ENSMUSG00000025909.17	ENSMUST00000132064.8	4165	20	934959	1560	440328	22	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAGCAAATGACCTCAAA	NA	NA	NA	NA	NA	NA	NA	NA	8433839	8433258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_8433300_8433800
ONT_simulated_read_15387280	chr3	-	583	1	ISM	ENSMUSG00000027534.17	ENSMUST00000099223.11	2512	7	20909	794	20894	326	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAGATGACTTTCTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	10484253	10483670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_10483700_10484300
ONT_simulated_read_1539010	chr16	+	569	1	ISM	ENSMUSG00000022967.14	ENSMUST00000023689.11	3909	11	20066	1569	20040	-1569	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGACCGTGTCCAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	91302191	91302760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_91302200_91302800
ONT_simulated_read_15390785	chr11	+	1053	7	ISM	ENSMUSG00000036620.15	ENSMUST00000041725.14	2429	15	0	2771	0	-2771	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCTTCCTCATGATGTAT	NA	NA	NA	NA	NA	NA	NA	NA	50116161	50123159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_50116567_50121506_50121693_50121787_50121929_50122017_50122152_50122565_50122613_50122850_50122965_50123133
ONT_simulated_read_15391462	chr7	-	383	3	ISM	ENSMUSG00000038187.15	ENSMUST00000119278.8	2394	9	436	17152	383	-17152	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGCCAGTCAAGCTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	112968163	112932001	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_112932103_112934528_112934726_112968078
ONT_simulated_read_15392206	chr18	-	1350	1	NIC	ENSMUSG00000038524.14	novel	4270	20	NA	NA	10079	-723	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAAGTTCAGTTCTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	38092708	38091358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_38091400_38092700
ONT_simulated_read_15393188	chr4	-	1749	5	ISM	ENSMUSG00000028882.14	ENST00000373931.8	2374	7	8342	114	8339	-108	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTTTGTACAGATTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	132562095	132554347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_132555518_132556683_132556749_132557935_132558081_132560207_132560429_132561947
ONT_simulated_read_15393216	chr7	-	2030	9	ISM	ENSMUSG00000030986.14	ENSMUST00000033290.12	2955	12	16891	2185	16789	-2017	internal_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCCCTATGCAGAGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	133361641	133324855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128
ONT_simulated_read_15393342	chr8	-	1045	1	Antisense	novelGene_ENSMUSG00000054823.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACAACCTCGGCGGACTT	NA	NA	NA	NA	NA	NA	NA	NA	26164470	26163425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr8_-_26163400_26164500
ONT_simulated_read_1539748	chr19	-	1870	1	ISM	ENSMUSG00000025092.8	ENSMUST00000066285.6	5734	12	61009	2356	60992	-2356	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCCATCAAACCTGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	58788407	58786537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_58786500_58788400
ONT_simulated_read_15397630	chr3	-	325	1	ISM	ENSMUSG00000057609.7	ENSMUST00000074142.7	705	2	1131	317	0	-118	mono-exon	FALSE	NA	NA	NA	NA	NA	355	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTGGCAGCAGTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	92554483	92554158	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_92554200_92554500
ONT_simulated_read_15399762	chr4	-	390	2	ISM	ENSMUSG00000028394.10	ENSMUST00000030091.10	1805	4	646	1177	646	-1177	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAGCTGACCAGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	62442659	62442062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_62442348_62442554
ONT_simulated_read_15400373	chr13	-	1200	1	ISM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	11392	238	11322	-238	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGCTCAAAATAATGAACC	NA	NA	NA	NA	NA	NA	NA	NA	14226681	14225481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_14225500_14226700
ONT_simulated_read_15401295	chr8	-	706	5	ISM	ENSMUSG00000036356.16	ENSMUST00000130214.8	3029	11	346437	479	346437	-479	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCAGCAGTAAAAAGACAT	NA	NA	NA	NA	NA	NA	NA	NA	68841329	68811097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_68811366_68814719_68814802_68825271_68825367_68826190_68826370_68841247
ONT_simulated_read_15402513	chr2	-	991	7	ISM	ENSMUSG00000049252.18	ENSMUST00000167270.5	10071	63	506813	384534	506813	-384534	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCCCTGATGCCAATATCA	NA	NA	NA	NA	NA	NA	NA	NA	41172277	41075938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_41076014_41078824_41078951_41083549_41083691_41135951_41136102_41158348_41158444_41159166_41159342_41172048
ONT_simulated_read_15403912	chr11	+	1229	5	ISM	ENSMUSG00000037992.17	ENST00000425707.7	2938	7	3	3180	0	-2402	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGCCATCTGCCTCATC	NA	NA	NA	NA	NA	NA	NA	NA	98828543	98862585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_98828706_98841070_98841622_98860982_98861144_98861318_98861496_98862407
ONT_simulated_read_15404156	chr17	-	3040	14	ISM	ENSMUSG00000003534.18	ENST00000376569.7	3594	17	7514	153	860	-153	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTAGCTACCACATTG	NA	NA	NA	NA	NA	NA	NA	NA	36003949	35992636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35998036_35998203_35999430_35999583_35999677_35999762_36000558_36000806_36000885_36001073_36002019_36002123_36002338_36002487_36003747
ONT_simulated_read_15407471	chr9	-	1347	6	ISM	ENSMUSG00000011114.19	ENSMUST00000117654.3	1984	9	4173	0	4173	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	508	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGATTCTGACCCTAGTT	NA	NA	NA	NA	NA	NA	NA	NA	37564435	37560058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564058_37564328
ONT_simulated_read_15407488	chr4	+	582	5	ISM	ENSMUSG00000028601.19	ENSMUST00000116307.8	893	9	8292	-91	8292	91	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACTTACTTACTCTCACA	NA	NA	NA	NA	NA	NA	NA	NA	108031006	108036356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
ONT_simulated_read_15410955	chr19	+	1241	10	ISM	ENSMUSG00000024949.18	ENSMUST00000113488.8	2282	14	153	2455	41	-2455	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCAGAGAATCGGCCCTA	NA	NA	NA	NA	NA	NA	NA	NA	6413992	6424087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039
ONT_simulated_read_15411401	chr10	+	2546	13	ISM	ENSMUSG00000035206.11	ENSMUST00000035597.10	2869	15	6994	0	925	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCCTCCTGTCCTGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	80698102	80704542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_80698197_80698532_80698623_80698788_80698929_80699013_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333_80702495_80703233
ONT_simulated_read_15412765	chr7	-	1016	1	ISM	ENSMUSG00000030747.6	ENSMUST00000033001.6	2262	8	28046	0	27936	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTTGTTGCTTAATGC	NA	NA	NA	NA	NA	NA	NA	NA	98803880	98802864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_98802900_98803900
ONT_simulated_read_15414009	chr7	-	197	1	ISM	ENSMUSG00000030533.17	ENSMUST00000107368.9	3685	23	20521	0	14731	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTGTTTGTTGTTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	79975236	79975039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_79975000_79975200
ONT_simulated_read_15414582	chr14	-	566	1	ISM	ENSMUSG00000021835.16	ENSMUST00000074077.12	2064	4	5983	601	5864	-414	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGATTGGATTGTGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	46622143	46621577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_46621600_46622100
ONT_simulated_read_15417283	chr13	-	496	1	FSM	ENSMUSG00000114598.2	ENSMUST00000223763.2	2800	1	0	2304	0	-2304	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTCCAGGCTCCTGTACA	NA	NA	NA	NA	NA	NA	NA	NA	98937918	98937422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_98937400_98937900
ONT_simulated_read_15421620	chr9	-	1617	11	ISM	ENSMUSG00000032534.19	ENST00000683190.1	1971	13	4411	90	4411	-90	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGCCTTCAGTGCTAGA	NA	NA	NA	NA	NA	NA	NA	NA	102492554	102465996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_102466187_102467526_102467733_102471706_102471794_102473320_102473519_102475367_102475483_102478515_102478654_102479616_102479748_102480040_102480275_102484524_102484639_102490493_102490617_102492473
ONT_simulated_read_1542373	chr9	+	1162	9	ISM	ENSMUSG00000025887.11	ENSMUST00000027009.11	2649	11	46	14719	-28	-510	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTACTGTTGGTGTTATCA	NA	NA	NA	NA	NA	NA	NA	NA	5345475	5358313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_5345526_5346481_5346734_5348898_5348959_5350399_5350478_5352196_5352292_5352671_5352846_5353633_5353869_5354533_5354684_5358245
ONT_simulated_read_154292	chr6	-	385	3	ISM	ENSMUSG00000051169.15	ENST00000424438.5	644	6	851	5	716	-5	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1122	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTCTCAACAGTAGACT	NA	NA	NA	NA	NA	NA	NA	NA	113394187	113392508	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113392684_113393749_113393874_113394101
ONT_simulated_read_15430644	chr7	+	1788	5	ISM	ENSMUSG00000030852.19	ENSMUST00000207282.2	3464	15	0	29775	0	-26440	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATGAGGAGAAGCTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	130294494	130336739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_130294718_130318432_130318570_130330252_130331559_130335235_130335297_130336678
ONT_simulated_read_15435636	chr3	-	313	3	ISM	ENSMUSG00000068922.15	ENSMUST00000126245.2	1875	14	2559	1169	2491	-1169	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCACTGGTTCGAGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	88818747	88818090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_88818118_88818189_88818322_88818593
ONT_simulated_read_15436740	chr5	+	1308	1	FSM	ENSMUSG00000070697.5	ENSMUST00000090413.6	1629	1	0	321	0	-321	mono-exon	FALSE	NA	NA	NA	NA	NA	463	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGAAGAACAGGCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	88702320	88703628	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_88702300_88703600
ONT_simulated_read_15438391	chr11	-	1602	15	ISM	ENSMUSG00000009073.17	ENST00000361676.8	1719	16	30361	0	30361	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	374	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCCACCTCCTGCCACATC	NA	NA	NA	NA	NA	NA	NA	NA	4768624	4718213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504
ONT_simulated_read_15438449	chr4	-	2435	1	ISM	ENSMUSG00000040842.18	ENSMUST00000102487.4	3244	4	24073	258	24073	-258	mono-exon	FALSE	NA	NA	NA	NA	NA	231	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCCCTGGTAAGCAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	140843004	140840569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_140840600_140843000
ONT_simulated_read_1543998	chr6	-	1008	1	ISM	ENSMUSG00000029569.10	ENSMUST00000031554.9	4587	5	4621	21785	4621	-21785	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATTTTCGGATTTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	13603478	13602470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_13602500_13603500
ONT_simulated_read_15440883	chr2	-	507	5	ISM	ENSMUSG00000078919.11	ENST00000683466.1	642	7	7390	0	7390	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACATGAGCCAAAGGTAAGA	NA	NA	NA	NA	NA	NA	NA	NA	168062034	168052364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_168052557_168053285_168053401_168059600_168059697_168061139_168061166_168061956
ONT_simulated_read_15440920	chr11	-	164	2	ISM	ENSMUSG00000018171.10	ENSMUST00000018315.10	2787	12	40206	51411	40206	-51411	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTTCATGGCCAGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	86534456	86526101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_86526133_86534323
ONT_simulated_read_15442096	chr19	+	555	4	ISM	ENSMUSG00000038812.17	ENSMUST00000088257.14	957	5	49	431	0	-410	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCTATGAGCACGACGAGA	NA	NA	NA	NA	NA	NA	NA	NA	6887114	6887986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_6887224_6887321_6887631_6887730_6887833_6887951
ONT_simulated_read_15442927	chr11	+	523	7	ISM	ENSMUSG00000018906.15	ENSMUST00000019050.12	2230	16	23710	381	23682	-381	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCTCCTCCCTGGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	54015498	54022097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_54015554_54015771_54015872_54016588_54016643_54017171_54017238_54019873_54019943_54020291_54020389_54022015
ONT_simulated_read_15442982	chr5	+	444	1	Antisense	novelGene_ENSMUSG00000038690.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	853	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCACAGCTGACACCTGC	NA	NA	NA	NA	NA	NA	NA	NA	145128312	145128756	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr5_+_145128300_145128800
ONT_simulated_read_15443097	chr6	-	1104	1	NIC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	26729	532	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAACAGATGGGATGTG	NA	NA	NA	NA	NA	NA	NA	NA	30482985	30481881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_30481900_30483000
ONT_simulated_read_1544590	chr12	+	1868	8	ISM	ENSMUSG00000032705.10	ENST00000409018.7	3049	9	361	898	357	-898	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTGTGTGCAAAAGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	80522853	80543997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_80522963_80527228_80527486_80531019_80531147_80536175_80536508_80537554_80537662_80537868_80538005_80539315_80539673_80543554
ONT_simulated_read_15448486	chr11	-	1212	5	ISM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	2585	389	2585	-389	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	462	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATTTACCAAACACCGTG	NA	NA	NA	NA	NA	NA	NA	NA	51888726	51876712	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644
ONT_simulated_read_15449082	chr7	-	451	3	ISM	ENSMUSG00000030733.11	ENSMUST00000205733.2	2956	9	5870	690	5870	-684	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGCGCCAGAAGTTGCGG	NA	NA	NA	NA	NA	NA	NA	NA	126068124	126066860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126066946_126067644_126067814_126067927
ONT_simulated_read_1544911	chr8	+	524	4	ISM	ENSMUSG00000031766.5	ENSMUST00000034218.5	3299	25	27110	163	27099	-163	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAAGTTCTACTGTATCA	NA	NA	NA	NA	NA	NA	NA	NA	95082938	95092679	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_95083027_95083637_95083774_95085083_95085152_95092447
ONT_simulated_read_15449409	chr4	-	636	4	ISM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	12190	369	12190	-369	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATGAATATGAAATTCC	NA	NA	NA	NA	NA	NA	NA	NA	119139611	119135546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342
ONT_simulated_read_1545180	chr17	+	793	9	ISM	ENSMUSG00000036636.11	ENST00000262318.12	2445	24	-7	10408	-7	-10408	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATTTTGTCTCAGCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	25352438	25369194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_25352589_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25365854_25366683_25366765_25368012_25368076_25368184_25368269_25369160
ONT_simulated_read_15453910	chr17	-	142	1	ISM	ENSMUSG00000052142.16	ENSMUST00000063824.14	3681	17	10815	1968	10585	-582	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGCACACAGAGCGTCC	NA	NA	NA	NA	NA	NA	NA	NA	32611742	32611600	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32611600_32611700
ONT_simulated_read_154540	chr15	+	1478	7	NNC	ENSMUSG00000022551.9	novel	1520	7	NA	NA	38	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	150	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCCATGGTGTGTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	76227760	76230460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_76227893_76228505_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
ONT_simulated_read_15455090	chr3	+	1979	1	FSM	ENSMUSG00000093577.2	ENSMUST00000176760.2	2427	1	0	448	0	-448	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTTCGAGACAGGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	96146708	96148687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_96146700_96148700
ONT_simulated_read_15455401	chr11	-	934	1	NIC	ENSMUSG00000025140.16	novel	2914	8	NA	NA	2877	0	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	120531175	120530241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_120530200_120531200
ONT_simulated_read_15458293	chr10	+	867	1	ISM	ENSMUSG00000035370.10	ENSMUST00000178231.2	4516	6	794	8102	794	-8102	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCTCGACATCTGCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	80442648	80443515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_80442600_80443500
ONT_simulated_read_15459770	chr9	-	183	1	ISM	ENSMUSG00000003410.9	ENST00000359227.8	4741	8	35425	1411	35412	-1411	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTTGCTTTCTTCCGGTG	NA	NA	NA	NA	NA	NA	NA	NA	21927894	21927711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21927700_21927900
ONT_simulated_read_1546122	chr9	+	946	3	ISM	ENSMUSG00000032481.18	ENSMUST00000199896.2	5773	29	102871	1673	102871	-1673	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGGTATCCTTTCGATTT	NA	NA	NA	NA	NA	NA	NA	NA	110063975	110067573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_110064122_110065783_110065897_110066886
ONT_simulated_read_15462126	chr16	-	796	6	ISM	ENSMUSG00000022515.7	ENSMUST00000023157.6	2398	17	13422	2149	13422	-2149	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGCTTGCCATTCAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	4768615	4761448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476
ONT_simulated_read_15462215	chr14	-	324	1	ISM	ENSMUSG00000055538.8	ENSMUST00000069180.8	4556	4	53654	3420	53654	-3420	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCAGAGGTCTCGATGT	NA	NA	NA	NA	NA	NA	NA	NA	25715809	25715485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_25715500_25715800
ONT_simulated_read_15465910	chr14	-	1203	1	FSM	ENSMUSG00000115801.2	ENSMUST00000226445.2	93147	1	49556	42388	49556	-42388	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTATTTTTGTATCTAT	NA	NA	NA	NA	NA	NA	NA	NA	44825102	44823899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_44823900_44825100
ONT_simulated_read_15466007	chr5	-	696	5	ISM	ENSMUSG00000037373.13	ENSMUST00000201575.4	2091	8	23939	810	23928	-539	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCTCCTGGCCAGACTG	NA	NA	NA	NA	NA	NA	NA	NA	33408397	33405907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_33406031_33406450_33406569_33406930_33407059_33407714_33407846_33408201
ONT_simulated_read_15467418	chr13	+	3136	1	ISM	ENSMUSG00000021578.18	ENSMUST00000022063.14	9559	3	11060	1279	11025	-1279	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGAAACAATTTCACCGAA	NA	NA	NA	NA	NA	NA	NA	NA	74509487	74512623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_74509500_74512600
ONT_simulated_read_15471775	chr11	-	439	1	ISM	ENSMUSG00000020832.15	ENSMUST00000021183.4	2014	10	6241	328	6241	-328	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACCCTAGAACCCATGGT	NA	NA	NA	NA	NA	NA	NA	NA	77964968	77964529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_77964500_77965000
ONT_simulated_read_15475244	chr18	-	1343	12	ISM	ENSMUSG00000038524.14	ENST00000435817.7	4121	20	2114	5115	2080	-3609	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGGAGTGGATGATGGC	NA	NA	NA	NA	NA	NA	NA	NA	38100707	38095750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_38095847_38095972_38096091_38096180_38096265_38096345_38096475_38097060_38097223_38097366_38097472_38097843_38097964_38098703_38098800_38098951_38099075_38099493_38099623_38100415_38100480_38100590
ONT_simulated_read_15477694	chr14	+	475	1	ISM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	42741	262	42640	97	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCATCAAATGGCTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	73832845	73833320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_73832800_73833300
ONT_simulated_read_1547933	chr2	-	949	8	ISM	ENSMUSG00000049252.18	ENST00000389484.8	15286	89	1159267	108584	-174175	97565	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACACTGCAGTGGTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	40691523	40593839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_40593952_40605383_40605507_40615393_40615527_40615859_40615967_40620708_40620839_40632773_40632881_40640911_40641029_40691403
ONT_simulated_read_15479334	chr12	+	1275	8	ISM	ENSMUSG00000021144.15	ENSMUST00000069690.5	2697	20	33009	170	33009	-170	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTTGAAGGTGCCATTTT	NA	NA	NA	NA	NA	NA	NA	NA	113094951	113100623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113097160_113097197_113099416_113099449_113099900_113100053_113100137
ONT_simulated_read_15480261	chr9	-	825	1	ISM	ENSMUSG00000032127.10	ENSMUST00000034644.10	3536	16	13097	0	13097	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTTCTGGATAGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	44259870	44259045	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44259000_44259900
ONT_simulated_read_15481447	chr6	-	219	1	ISM	ENSMUSG00000030216.13	ENSMUST00000116514.4	2739	12	13620	741	13620	-741	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGCACTGAGGGTACGCC	NA	NA	NA	NA	NA	NA	NA	NA	136791611	136791392	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_136791400_136791600
ONT_simulated_read_15482204	chr7	+	962	9	ISM	ENSMUSG00000030779.17	ENSMUST00000071590.6	5728	17	0	12660	0	5505	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGATGCTTTAATTGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	122570140	122589120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_122570351_122575158_122575259_122577798_122577836_122582185_122582231_122584215_122584305_122584423_122584524_122584882_122585023_122587824_122587998_122589052
ONT_simulated_read_15483565	chr2	-	2684	13	ISM	ENSMUSG00000075316.12	ENST00000409435.6	5952	26	27638	9758	27638	-9758	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACATTTATTTTGTCATCT	NA	NA	NA	NA	NA	NA	NA	NA	66370970	66323522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_66323561_66324229_66324284_66324952_66325235_66331956_66332080_66335192_66335367_66338863_66339019_66345658_66345777_66356951_66357429_66363405_66363763_66364457_66364632_66366441_66366681_66367613_66367744_66370607
ONT_simulated_read_15484781	chr6	+	2600	1	ISM	ENSMUSG00000032712.17	ENSMUST00000046689.13	6066	5	16030	7606	0	-6873	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGCACAGACCAAATAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	149226955	149229555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_149227000_149229600
ONT_simulated_read_15489497	chr11	+	1039	5	ISM	ENSMUSG00000020486.20	ENST00000426861.5	1778	9	5551	-14	5551	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCAGGTGTCTCTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	87479693	87481363	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_87479912_87480000_87480103_87480293_87480391_87480481_87480882_87481141
ONT_simulated_read_1549056	chr7	-	339	1	ISM	ENSMUSG00000030733.11	ENSMUST00000205440.2	3089	11	2012	5746	1744	-5735	mono-exon	FALSE	NA	NA	NA	NA	NA	200	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTCCATTGAGCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	126072250	126071911	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126071900_126072200
ONT_simulated_read_15492386	chr6	-	661	1	ISM	ENSMUSG00000000627.16	ENSMUST00000000641.15	4086	14	25679	1545	25628	-137	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACTGAACCTGGGAGACG	NA	NA	NA	NA	NA	NA	NA	NA	82891071	82890410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_82890400_82891100
ONT_simulated_read_15492551	chr9	-	337	1	ISM	ENSMUSG00000032298.14	ENST00000355059.9	1860	6	5639	0	5628	0	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCCCAGAGCCCCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	57048690	57048353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_57048400_57048700
ONT_simulated_read_15493198	chr15	-	1117	1	ISM	ENSMUSG00000023008.19	ENSMUST00000081224.14	4137	25	52108	0	52108	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTTGCACCAAGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	99216222	99215105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_99215100_99216200
ONT_simulated_read_15494632	chr8	-	1561	1	NIC	ENSMUSG00000031640.12	novel	2753	17	NA	NA	1362	-35873	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGACTAATGTTACTATC	NA	NA	NA	NA	NA	NA	NA	NA	45760141	45758580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_45758600_45760100
ONT_simulated_read_15495933	chr15	+	452	5	ISM	ENSMUSG00000022386.13	ENST00000643137.1	1071	9	9905	731	9905	-731	internal_fragment	FALSE	canonical	NA	NA	NA	NA	488	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAGGAGCCACCTGCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	85776777	85780627	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_85776941_85778026_85778081_85778154_85778222_85779126_85779228_85780560
ONT_simulated_read_15497092	chr12	-	176	1	ISM	ENSMUSG00000002679.15	ENSMUST00000161211.8	1059	8	21076	198	21028	-190	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAACACTATCGCAGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	81620704	81620528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_81620500_81620700
ONT_simulated_read_15497382	chr3	+	402	1	ISM	ENSMUSG00000023087.16	ENSMUST00000144826.2	9797	2	0	11017	0	-11017	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCGAATTCAGAACTCAT	NA	NA	NA	NA	NA	NA	NA	NA	51147626	51148028	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_51147600_51148000
ONT_simulated_read_15498746	chr18	-	351	2	ISM	ENSMUSG00000042680.9	ENSMUST00000049260.7	4923	6	168639	2638	168624	-1352	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTCTGCTCGATCCGAG	NA	NA	NA	NA	NA	NA	NA	NA	21264556	21262895	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_21263080_21264389
ONT_simulated_read_15499910	chr4	-	588	1	ISM	ENSMUSG00000043872.15	ENSMUST00000106102.9	3852	8	11550	1921	9384	-1373	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGGTGACTGGGGTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	126943395	126942807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126942800_126943400
ONT_simulated_read_15501106	chr13	-	1676	1	ISM	ENSMUSG00000021687.15	ENSMUST00000022197.15	4259	9	81700	1144	42429	920	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTATTGGATTATACATC	NA	NA	NA	NA	NA	NA	NA	NA	94340637	94338961	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_94339000_94340600
ONT_simulated_read_15503216	chr8	+	1851	15	NNC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	-7	-526	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTGGTAATGTTGTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	85415885	85425888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_+_85416006_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423978_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767
ONT_simulated_read_15505203	chr4	-	427	4	ISM	ENSMUSG00000028546.18	ENSMUST00000102722.9	4107	7	73654	2869	73654	-665	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCACACAGGGACAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	110070432	110063802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_110063857_110066936_110066976_110068622_110068849_110070324
ONT_simulated_read_15505525	chr6	-	1171	7	ISM	ENSMUSG00000030127.16	ENST00000229251.7	1671	8	555	418	519	-418	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCTGGCTCTTAACCACC	NA	NA	NA	NA	NA	NA	NA	NA	124941892	124936261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686
ONT_simulated_read_15507194	chr8	+	451	5	ISM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	13443	453	13443	-453	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCTATCCGAAAGGTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	75849694	75853863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
ONT_simulated_read_15508797	chr4	-	1111	12	ISM	ENSMUSG00000028245.16	ENSMUST00000029910.12	3507	31	25777	20390	25777	-20390	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTGTTTGTGACACCACA	NA	NA	NA	NA	NA	NA	NA	NA	6428494	6416596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_6416664_6417164_6417208_6417745_6417878_6418260_6418382_6418471_6418524_6419863_6419928_6420049_6420141_6421056_6421137_6423321_6423499_6424878_6424988_6426401_6426474_6428391
ONT_simulated_read_15509877	chr13	-	808	1	NIC	ENSMUSG00000033799.11	novel	8338	20	NA	NA	44082	-184	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	510	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAGTCAATTGAGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	3617026	3616218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_3616200_3617000
ONT_simulated_read_15510204	chr13	-	209	1	FSM	ENSMUSG00000072421.5	ENSMUST00000159886.2	264	1	0	55	0	-55	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGAGATGCCAAAACAGAC	NA	NA	NA	NA	NA	NA	NA	NA	8340149	8339940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_8339900_8340100
ONT_simulated_read_15512879	chr4	-	414	6	ISM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	38825	2921	38791	-2921	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGTACAGTCATTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	56826363	56813855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273
ONT_simulated_read_15512906	chr18	-	411	3	ISM	ENSMUSG00000063889.17	ENST00000374734.7	657	5	30329	0	4304	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTTGATTTGGACCTT	NA	NA	NA	NA	NA	NA	NA	NA	3295148	3267984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_3268130_3273421_3273579_3295039
ONT_simulated_read_15515151	chr9	+	504	2	ISM	ENSMUSG00000042487.7	ENSMUST00000048937.6	2180	12	0	20794	0	-20794	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGACGAGAAGCTGCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	75348817	75352920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_75348918_75352516
ONT_simulated_read_15515640	chr6	-	612	5	ISM	ENSMUSG00000001158.14	ENSMUST00000001186.11	885	6	1557	186	12	55	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCCTTGTTCCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	86659947	86652318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837
ONT_simulated_read_15518561	chr1	-	1621	6	ISM	ENSMUSG00000026219.15	ENST00000675423.1	6590	43	108013	-653	108013	427	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCTCACTCATTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	84708417	84701557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252
ONT_simulated_read_1552023	chr19	+	1119	9	ISM	ENSMUSG00000042179.7	ENSMUST00000048644.6	1619	13	1609	2909	521	0	internal_fragment	FALSE	canonical	NA	NA	NA	NA	306	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCTTCCTTTGCTGAGTT	NA	NA	NA	NA	NA	NA	NA	NA	58718927	58729692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_58719033_58720455_58720591_58721787_58721897_58723074_58723195_58723304_58723425_58725422_58725542_58726577_58726708_58728877_58728987_58729520
ONT_simulated_read_15526753	chr12	+	171	1	NIC	ENSMUSG00000021140.10	novel	8318	36	NA	NA	112882	-22970	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTATATAGTCACCCGATC	NA	NA	NA	NA	NA	NA	NA	NA	82019960	82020131	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_+_82020000_82020100
ONT_simulated_read_15526860	chr2	-	2070	9	ISM	ENSMUSG00000026869.13	ENSMUST00000028225.12	4397	10	3924	2115	3884	726	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	229	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACCAATGTTTATATCTAA	NA	NA	NA	NA	NA	NA	NA	NA	34757050	34741860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34756904
ONT_simulated_read_15528015	chr7	+	1145	9	ISM	ENSMUSG00000015165.17	ENSMUST00000038572.15	2142	13	2455	1599	2455	-1582	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCGCATCCAGCACCCTA	NA	NA	NA	NA	NA	NA	NA	NA	28512769	28520092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28517958_28518068_28518350_28519577_28519700_28519969
ONT_simulated_read_15528481	chr7	-	1799	2	ISM	ENSMUSG00000061374.15	ENSMUST00000208944.2	2306	3	242	451	242	-167	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATTTTAACCACCCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	5015995	5010724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_5012205_5015676
ONT_simulated_read_1552849	chr8	+	935	6	ISM	ENSMUSG00000054320.17	ENSMUST00000067305.8	2082	11	0	12036	0	-12024	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAACGTGGAGCAACAGCT	NA	NA	NA	NA	NA	NA	NA	NA	106154271	106178682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_106154456_106158156_106158246_106170365_106170494_106172839_106172889_106176018_106176460_106178638
ONT_simulated_read_15528747	chr14	-	1007	1	ISM	ENSMUSG00000021959.17	ENSMUST00000022531.14	5191	8	54373	1082	42550	-1082	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTGTGGAGAGTACTGC	NA	NA	NA	NA	NA	NA	NA	NA	57929207	57928200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_57928200_57929200
ONT_simulated_read_15530111	chr11	-	880	5	ISM	ENSMUSG00000020439.18	ENST00000358743.5	3013	20	4878	12445	-4572	-12445	internal_fragment	FALSE	canonical	NA	NA	NA	NA	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGCTCTCAGGTCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	3482509	3479967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410
ONT_simulated_read_155319	chr7	+	1037	8	ISM	ENSMUSG00000030890.17	ENST00000528995.5	1483	10	3413	142	3413	-111	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTTATGGGACTTGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	105389717	105391983	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105389816_105390166_105390251_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
ONT_simulated_read_15532312	chr6	+	975	5	ISM	ENSMUSG00000029761.17	ENSMUST00000115021.8	4041	12	48	19763	48	-17984	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGGAGCTGCGCCGACGC	NA	NA	NA	NA	NA	NA	NA	NA	34686424	34732645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_34686633_34718723_34718871_34722553_34722951_34730377_34730524_34732568
ONT_simulated_read_15535364	chr2	+	197	1	ISM	ENSMUSG00000037514.19	ENSMUST00000150843.9	4266	7	36045	447	36045	-447	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGCTAAACGACAAGACTA	NA	NA	NA	NA	NA	NA	NA	NA	131140464	131140661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_131140500_131140700
ONT_simulated_read_15535615	chr5	+	1166	7	ISM	ENSMUSG00000025340.15	ENSMUST00000026390.8	2828	8	59	2318	59	-2318	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCCCCTCGCCTGCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	130216060	130240860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_130216428_130219717_130219885_130226790_130226958_130235849_130235932_130237526_130237660_130239264_130239357_130240702
ONT_simulated_read_15536436	chr3	+	1698	13	ISM	ENSMUSG00000068823.11	ENSMUST00000197488.5	3827	19	8431	6732	8431	-6077	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAGACATGGTTGAATACA	NA	NA	NA	NA	NA	NA	NA	NA	102936410	102958388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355
ONT_simulated_read_15537077	chr16	-	318	1	NIC	ENSMUSG00000022771.18	novel	2333	21	NA	NA	22347	-1233	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCCAGTGCTGCCACCT	NA	NA	NA	NA	NA	NA	NA	NA	16906730	16906412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_16906400_16906700
ONT_simulated_read_15544085	chr12	+	176	1	NIC	ENSMUSG00000020570.16	novel	4999	6	NA	NA	0	-22545	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGCAGCTTGCGACGC	NA	NA	NA	NA	NA	NA	NA	NA	33004182	33004358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_+_33004200_33004400
ONT_simulated_read_15544884	chr1	-	580	5	ISM	ENSMUSG00000013593.13	ENSMUST00000111318.8	1545	12	8245	1773	8245	-1752	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCATTGAAGCTCCTAAG	NA	NA	NA	NA	NA	NA	NA	NA	171066446	171064194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066278
ONT_simulated_read_15549568	chr7	+	1439	6	ISM	ENSMUSG00000052707.9	ENSMUST00000094053.7	8183	24	0	25016	0	-25012	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCACTGAAACGACTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	122723403	122769503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_122723556_122723890_122723939_122742972_122743061_122751386_122751409_122761716_122762101_122768758
ONT_simulated_read_15549928	chrX	-	304	1	FSM	ENSMUSG00000081752.4	ENSMUST00000121773.2	1101	1	0	797	0	-797	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACAGTACTGGGCGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	61820291	61819987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_61820000_61820300
ONT_simulated_read_15551107	chr14	-	2607	12	ISM	ENSMUSG00000034893.10	ENSMUST00000049168.9	4268	23	23841	337	23805	-337	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTACATTGGGTGTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	75968157	75940146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_75941501_75944529_75944629_75945361_75945490_75950640_75950717_75954307_75954443_75954548_75954638_75957131_75957253_75959541_75959632_75962150_75962276_75965147_75965254_75966710_75966872_75968034
ONT_simulated_read_15551369	chr3	-	1590	1	ISM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	36847	430	36847	-430	mono-exon	FALSE	NA	NA	NA	NA	NA	397	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCCTTTGTTGGCAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	108016615	108015025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_108015000_108016600
ONT_simulated_read_15552281	chr3	-	1096	1	ISM	ENSMUSG00000028149.13	ENSMUST00000098574.9	3669	15	147522	682	147391	-674	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGAGGAAACCTGAAGTA	NA	NA	NA	NA	NA	NA	NA	NA	138633440	138632344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_138632300_138633400
ONT_simulated_read_15552685	chr7	-	1644	1	ISM	ENSMUSG00000030706.18	ENSMUST00000150042.8	4285	8	33742	1966	-1740	992	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTGGGCTGGCTAACTA	NA	NA	NA	NA	NA	NA	NA	NA	100198567	100196923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_100196900_100198600
ONT_simulated_read_15553007	chr7	-	818	1	ISM	ENSMUSG00000039176.18	ENSMUST00000073889.14	7837	23	16851	2463	16851	-2463	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGCTAAGATTAGTCCC	NA	NA	NA	NA	NA	NA	NA	NA	79099259	79098441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_79098400_79099300
ONT_simulated_read_15554573	chrX	+	473	4	FSM	ENSMUSG00000031132.2	ENST00000370628.2	1698	4	10	1215	0	-714	multi-exon	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGCTCTAATCGGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	56257502	56268688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_56257671_56259324_56259457_56263083_56263139_56268570
ONT_simulated_read_15554873	chr2	-	506	3	ISM	ENSMUSG00000027175.11	ENSMUST00000028597.4	3512	10	26638	1808	26632	-1808	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCCTTAGTAAGCTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	104515869	104512132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_104512304_104514438_104514612_104515707
ONT_simulated_read_15557622	chr10	-	1000	5	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	69272	11046	69272	-11046	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCGCCACTCAGACTTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	75530878	75492991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_75493287_75493629_75493727_75494467_75494632_75520125_75520240_75530548
ONT_simulated_read_15557808	chr11	+	2306	13	ISM	ENSMUSG00000018507.17	ENSMUST00000102643.2	2650	15	5142	-216	5142	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAACGTTGCCTCTGGTCGT	NA	NA	NA	NA	NA	NA	NA	NA	62472092	62491341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_62472132_62473668_62473960_62475201_62475501_62480476_62480651_62480988_62481145_62481732_62481832_62483051_62483123_62483576_62483743_62484978_62485046_62485748_62486078_62487735_62487864_62489059_62489140_62490934
ONT_simulated_read_1555865	chr6	+	425	2	ISM	ENSMUSG00000029781.8	ENSMUST00000031795.8	3009	10	0	29665	0	-29665	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGGACCAAGCTCTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	56809043	56826678	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_56809413_56826622
ONT_simulated_read_15559226	chr18	-	211	1	ISM	ENSMUSG00000024583.4	ENSMUST00000237004.2	4343	8	28121	3012	28006	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAAGTCTTCGTCATTCT	NA	NA	NA	NA	NA	NA	NA	NA	63797387	63797176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_63797200_63797400
ONT_simulated_read_15561728	chr2	+	411	3	ISM	ENSMUSG00000027649.16	ENSMUST00000029178.7	2442	16	0	111740	0	-111216	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACCAGGAGCTGCGGAT	NA	NA	NA	NA	NA	NA	NA	NA	157579320	157621794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_157579480_157616330_157616520_157621731
ONT_simulated_read_15563762	chr13	-	1737	1	ISM	ENSMUSG00000021690.11	ENSMUST00000065537.9	8776	11	64394	3577	64323	-3577	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCCTGCTGTGTAGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	93571922	93570185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_93570200_93571900
ONT_simulated_read_15566391	chr18	+	677	5	FSM	ENSMUSG00000024317.16	ENST00000257190.9	1886	5	-14	1223	0	-1223	multi-exon	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCCTAATACCATTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	21135047	21159363	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_21135227_21150875_21150933_21153944_21154057_21157465_21157574_21159142
ONT_simulated_read_1557239	chr4	-	182	2	ISM	ENSMUSG00000028441.13	ENSMUST00000030152.13	1114	7	10091	608	383	-606	internal_fragment	FALSE	canonical	NA	NA	NA	NA	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTGTTACAACTCCCCCG	NA	NA	NA	NA	NA	NA	NA	NA	41507242	41505616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_41505655_41507098
ONT_simulated_read_15574015	chr2	-	389	1	ISM	ENSMUSG00000039660.17	ENSMUST00000100220.5	1805	12	4297	294	4297	-294	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGTGGGCACTGCCACG	NA	NA	NA	NA	NA	NA	NA	NA	30064165	30063776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_30063800_30064200
ONT_simulated_read_15576691	chr14	+	770	8	ISM	ENSMUSG00000021996.17	ENSMUST00000176957.8	1117	9	0	4274	0	-4151	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTATTCGGGTTCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	74969823	74983014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_74969962_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989
ONT_simulated_read_15576946	chr19	-	528	5	ISM	ENSMUSG00000025027.19	ENSMUST00000237294.2	2956	20	19895	15570	19894	-15028	internal_fragment	FALSE	canonical	NA	NA	NA	NA	197	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCCCGAGGGAGAAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	53000682	52994653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619
ONT_simulated_read_15578081	chr1	-	1341	7	ISM	ENSMUSG00000026098.14	ENST00000624204.3	2682	11	4	17628	4	-9853	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGACGATTGGAGCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	53321227	53246089	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53314228_53314412_53321099
ONT_simulated_read_15579496	chr10	-	1290	7	ISM	ENSMUSG00000034602.16	ENSMUST00000073792.11	9301	36	62515	13952	62035	-10451	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCGTGACTCGGGGCCGCT	NA	NA	NA	NA	NA	NA	NA	NA	122849895	122841916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_122842041_122842876_122842938_122844040_122844232_122845407_122845537_122845817_122845836_122846398_122846543_122849272
ONT_simulated_read_15582374	chr5	+	866	4	ISM	ENSMUSG00000040532.15	ENSMUST00000046999.12	1493	6	157	794	0	-610	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACGCACGCCCCCCCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	135038309	135040235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_135038694_135038835_135038972_135039740_135039915_135040063
ONT_simulated_read_15586029	chr19	+	2448	16	ISM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	0	7322	0	-6815	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGCCTGTTTTCTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	10582690	10599861	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653
ONT_simulated_read_15586319	chr14	+	1452	1	FSM	ENSMUSG00000036339.19	ENSMUST00000226400.2	2281	1	101	728	16	-728	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGTTACCAATTTCCTAA	NA	NA	NA	NA	NA	NA	NA	NA	48683854	48685306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_48683900_48685300
ONT_simulated_read_15588255	chr18	+	487	3	ISM	ENSMUSG00000042660.9	ENSMUST00000049323.9	1619	7	2438	502	2438	-502	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGGCTTGGAGCACGGA	NA	NA	NA	NA	NA	NA	NA	NA	36895710	36896361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_36895811_36895901_36896072_36896144
ONT_simulated_read_15588413	chr4	-	629	1	NIC	ENSMUSG00000039911.14	novel	3092	3	NA	NA	0	-8447	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACGGCAAGAACCAGC	NA	NA	NA	NA	NA	NA	NA	NA	149991746	149991117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_149991100_149991700
ONT_simulated_read_1558901	chr17	+	1852	1	NIC	ENSMUSG00000019320.15	novel	2238	9	NA	NA	1944	-500	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTCTCTGTGTGGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	24917151	24919003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_+_24917200_24919000
ONT_simulated_read_15589082	chr11	+	1268	3	ISM	ENSMUSG00000018387.13	ENST00000319854.7	2394	7	2242	68	2242	-68	intron_retention	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCGGTTCCTTAAGGACCA	NA	NA	NA	NA	NA	NA	NA	NA	53356322	53357790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_53356872_53356950_53357084_53357204
ONT_simulated_read_15589621	chr10	-	2411	8	ISM	ENSMUSG00000001211.16	ENSMUST00000105387.8	1316	9	7369	-1203	7369	-845	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTTTTAATGTCATTCAT	NA	NA	NA	NA	NA	NA	NA	NA	78123859	78108241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680
ONT_simulated_read_1559058	chr17	-	1064	6	ISM	ENSMUSG00000023927.16	ENSMUST00000176669.8	4407	10	1640	43328	1640	-43304	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAACCACCCTCCCCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	52116307	52089807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_52090095_52092556_52092669_52110458_52110583_52111341_52111469_52112224_52112402_52116070
ONT_simulated_read_1559618	chr1	-	269	2	ISM	ENSMUSG00000090553.9	ENSMUST00000166291.8	360	4	1273	-5	1256	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTTCATTCTGGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	133536697	133531608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_133531815_133536634
ONT_simulated_read_15597342	chr11	-	891	5	FSM	ENSMUSG00000018168.9	ENST00000467757.5	1280	5	0	389	0	-389	multi-exon	FALSE	canonical	NA	NA	NA	NA	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACAGTGCCCAGGACTCC	NA	NA	NA	NA	NA	NA	NA	NA	98407763	98358200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_98358513_98367752_98367870_98376399_98376517_98381157_98381416_98407676
ONT_simulated_read_15597924	chr2	-	2956	1	ISM	ENSMUSG00000074934.4	ENSMUST00000099575.4	4148	2	8517	1010	8517	-1010	mono-exon	FALSE	NA	NA	NA	NA	NA	571	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAGACCATCAGAAATATGT	NA	NA	NA	NA	NA	NA	NA	NA	113580474	113577518	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_113577500_113580500
ONT_simulated_read_15603145	chr1	+	967	6	ISM	ENSMUSG00000042451.13	ENSMUST00000191577.2	2320	10	0	3394	0	-3393	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAGTACAGAAGGCAGACA	NA	NA	NA	NA	NA	NA	NA	NA	134121194	134125576	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_134121465_134121551_134121687_134122314_134122483_134124707_134124797_134125088_134125285_134125467
ONT_simulated_read_15603981	chr5	-	331	1	ISM	ENSMUSG00000029238.12	ENSMUST00000202651.4	9744	23	87955	6639	57175	-2654	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGACACAGCCAATTCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	76364684	76364353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_76364400_76364700
ONT_simulated_read_15604908	chr14	-	1574	12	ISM	ENSMUSG00000025278.10	ENST00000493452.5	7197	43	17782	45951	17782	-45951	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCCCTTCTCGGAAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	14582211	14565230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_14565312_14567771_14567890_14573217_14573388_14573592_14573684_14575085_14575247_14575515_14575640_14575885_14576030_14576786_14576901_14577499_14577694_14578906_14579044_14580511_14580639_14582098
ONT_simulated_read_15605008	chr1	-	640	2	ISM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	2352	1842	2352	-1842	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGATGGTGAAATGTGACC	NA	NA	NA	NA	NA	NA	NA	NA	75193586	75192713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_75193238_75193470
ONT_simulated_read_15607745	chr11	-	1660	13	ISM	ENSMUSG00000020400.18	ENST00000521591.6	2705	16	6699	557	6665	-557	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGCGCCCACCAGGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	54825007	54802173	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814
ONT_simulated_read_15608670	chr3	-	1473	12	ISM	ENSMUSG00000027712.14	ENSMUST00000029266.14	1731	13	370	0	370	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	2302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTAGGTTTGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	36529673	36503071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_36503556_36504460_36504584_36504786_36504846_36506335_36506432_36507619_36507714_36511141_36511199_36511607_36511688_36514591_36514683_36516029_36516144_36518116_36518212_36519399_36519485_36529578
ONT_simulated_read_15610309	chr5	-	935	4	ISM	ENSMUSG00000029713.16	ENSMUST00000150063.9	1569	9	1818	-372	1818	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACCTAGTCTCCTTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	137527741	137526392	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137526872_137526952_137527170_137527265_137527468_137527704
ONT_simulated_read_15611219	chr15	-	1869	12	ISM	ENSMUSG00000042632.18	ENST00000332509.8	2822	17	10240	3078	9952	-3078	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGAGAGCCCCGCTGCAACC	NA	NA	NA	NA	NA	NA	NA	NA	79202212	79173834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960
ONT_simulated_read_15611424	chr17	-	1241	1	ISM	ENSMUSG00000038500.16	ENSMUST00000172429.8	1878	4	5190	0	4778	0	mono-exon	FALSE	NA	NA	NA	NA	NA	306	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	36284673	36283432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_36283400_36284700
ONT_simulated_read_15613566	chr1	+	835	12	NIC	ENSMUSG00000026414.14	novel	1112	15	NA	NA	0	4	intron_retention	FALSE	non_canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCTGCTCACTGTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	135768594	135779180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_+_135768651_135769746_135769765_135771522_135771553_135773292_135773383_135773635_135773672_135774459_135774494_135775446_135775511_135775718_135775836_135776548_135776627_135777087_135777199_135778448_135778559_135779089
ONT_simulated_read_15613654	chr19	-	501	5	ISM	ENSMUSG00000025188.16	ENSMUST00000026194.15	2647	19	18218	508	17834	-506	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTGGTGCAGCAGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	42748868	42744142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802
ONT_simulated_read_15619179	chr9	-	749	7	ISM	ENSMUSG00000032382.15	ENST00000561026.5	1372	13	27315	1025	27315	-1025	internal_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTGACACGATTTGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	66004732	65996827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680
ONT_simulated_read_15619288	chr2	-	1324	10	ISM	ENSMUSG00000009207.16	ENSMUST00000064503.13	3195	13	9821	1609	9096	97	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATTCATATTCAGATTG	NA	NA	NA	NA	NA	NA	NA	NA	74399471	74352286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284
ONT_simulated_read_1562102	chr3	-	871	8	ISM	ENSMUSG00000074238.7	ENSMUST00000051737.8	2662	10	14878	1402	14878	-1402	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGCAGCAAAAAACCATGT	NA	NA	NA	NA	NA	NA	NA	NA	127616282	127602062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_127602403_127605864_127605994_127606182_127606257_127606888_127606945_127609244_127609344_127610558_127610656_127614408_127614435_127616232
ONT_simulated_read_15622237	chr3	-	2839	4	ISM	ENSMUSG00000027506.16	ENSMUST00000091354.12	2193	6	16427	-972	16427	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTTCTTTTTTATGTATT	NA	NA	NA	NA	NA	NA	NA	NA	9012679	8993685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540
ONT_simulated_read_15623833	chrX	+	906	7	ISM	ENSMUSG00000054453.12	ENSMUST00000067529.9	2301	17	0	45696	0	-45696	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGAAAACACCTGTGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	9751860	9815086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_9752019_9771756_9771967_9780141_9780258_9781744_9781854_9798971_9799107_9809278_9809421_9815050
ONT_simulated_read_15627518	chr4	+	325	1	FSM	ENSMUSG00000078238.5	ENSMUST00000128518.2	297	1	0	-28	0	28	mono-exon	FALSE	NA	NA	NA	NA	NA	330	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCACCTCCCCCGACCCC	NA	NA	NA	NA	NA	NA	NA	NA	115924464	115924789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_115924500_115924800
ONT_simulated_read_15631196	chr12	-	1610	7	ISM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	1946	441	1946	-441	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTTAACATTTAAAACATC	NA	NA	NA	NA	NA	NA	NA	NA	110660777	110657902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456
ONT_simulated_read_15631920	chr7	+	1079	8	ISM	ENSMUSG00000030451.17	ENST00000430598.5	3847	24	9	21674	0	-18678	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACATTGCCTAAATCTGT	NA	NA	NA	NA	NA	NA	NA	NA	55700624	55785076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_55700697_55744012_55744187_55780916_55781088_55781546_55781651_55782169_55782321_55784343_55784559_55784778_55784912_55785017
ONT_simulated_read_15633867	chr11	-	603	5	ISM	ENSMUSG00000020917.18	ENSMUST00000165111.8	4162	27	41299	2014	41299	-2014	internal_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCGTTTGTGGACATGCT	NA	NA	NA	NA	NA	NA	NA	NA	100373125	100369197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970
ONT_simulated_read_15634041	chrX	+	1395	2	FSM	ENSMUSG00000006373.11	ENST00000535419.2	1711	2	11	305	0	-305	multi-exon	FALSE	canonical	NA	NA	NA	NA	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTCATTCCTAAGGTAACA	NA	NA	NA	NA	NA	NA	NA	NA	35861858	35869426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_35862268_35868440
ONT_simulated_read_15635265	chr10	+	368	4	ISM	ENSMUSG00000044005.14	ENST00000610413.4	2049	15	182	8354	182	-8354	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGCTGGTGCCATTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	128030674	128037449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_128030777_128036754_128036835_128037074_128037239_128037427
ONT_simulated_read_15637551	chr6	+	766	2	ISM	ENSMUSG00000038451.14	ENSMUST00000047760.10	1213	3	0	746	0	-746	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCGTGGACTGAAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	124785623	124786836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_124785743_124786189
ONT_simulated_read_15639015	chr6	-	1989	4	ISM	ENSMUSG00000014748.14	ENSMUST00000014892.8	2984	6	1949	756	1949	-756	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	317	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGGAGGAAGTCAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	83750846	83746622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_83748286_83748428_83748532_83749223_83749292_83750691
ONT_simulated_read_15639447	chr1	-	712	6	ISM	ENSMUSG00000026193.16	ENSMUST00000188674.7	7680	45	54732	4574	54721	-4573	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCTGGTTGGCGTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	71637599	71629255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636547_71637532
ONT_simulated_read_15640814	chr8	+	957	5	NIC	ENSMUSG00000038365.9	novel	2035	11	NA	NA	12036	-209	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATACTCAGCCCCATATT	NA	NA	NA	NA	NA	NA	NA	NA	13976978	13989947	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_+_13977042_13979255_13979441_13981184_13981365_13985145_13985290_13989562
ONT_simulated_read_15641510	chr19	-	225	1	NIC	ENSMUSG00000024797.15	novel	2675	10	NA	NA	729	-344	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATCCACTGCTGCTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	6126501	6126276	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_6126300_6126500
ONT_simulated_read_15642190	chr5	+	358	4	ISM	ENSMUSG00000029387.11	ENSMUST00000031333.4	2672	13	26	13410	26	-13410	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCTGAGGAGATCAAGGATC	NA	NA	NA	NA	NA	NA	NA	NA	124717228	124722333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_124717265_124720510_124720591_124721996_124722104_124722198
ONT_simulated_read_1564506	chr3	-	203	1	ISM	ENSMUSG00000042672.16	ENSMUST00000070820.7	2342	16	14739	93	13802	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATCCGCCCACAGCGACA	NA	NA	NA	NA	NA	NA	NA	NA	89257821	89257618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_89257600_89257800
ONT_simulated_read_15647518	chr6	-	879	7	ISM	ENSMUSG00000005362.15	ENSMUST00000013882.10	2072	11	9096	630	9096	-630	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTACCAAGTTCAAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	106767930	106757791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_106758072_106758663_106758796_106759423_106759489_106759871_106759988_106760385_106760471_106761377_106761441_106767792
ONT_simulated_read_15649027	chrX	-	1122	1	FSM	ENSMUSG00000083670.2	ENSMUST00000119858.2	360	1	0	-762	0	762	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCCCAGCTCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	9194347	9193225	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_9193200_9194300
ONT_simulated_read_15650470	chr16	-	1999	1	ISM	ENSMUSG00000022772.13	ENSMUST00000231360.2	6332	10	39789	1828	39665	1006	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGATCTTCTGTTTAATA	NA	NA	NA	NA	NA	NA	NA	NA	31782316	31780317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_31780300_31782300
ONT_simulated_read_15651482	chr16	+	1216	6	ISM	ENSMUSG00000022708.17	ENSMUST00000114691.8	2891	7	0	9066	0	-9033	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCCACCACCCCTGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	43067646	43430393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_43067783_43122931_43122979_43283309_43283350_43390043_43390145_43397923_43398112_43429689
ONT_simulated_read_15652630	chrX	-	1376	11	ISM	ENSMUSG00000031099.17	ENST00000371123.5	3959	24	5307	48959	5234	15998	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAGGATTATTGTATGT	NA	NA	NA	NA	NA	NA	NA	NA	46976075	46947208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_46947255_46949297_46949525_46950155_46950266_46963031_46963101_46964040_46964173_46965261_46965418_46968322_46968503_46972224_46972326_46972452_46972554_46972913_46973081_46975988
ONT_simulated_read_15654090	chr2	-	829	4	ISM	ENSMUSG00000075316.12	ENST00000644316.1	6000	25	27638	50941	27638	-50737	internal_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCAGATGTGGAAGGATTA	NA	NA	NA	NA	NA	NA	NA	NA	66370970	66364501	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_66364632_66366441_66366681_66367613_66367744_66370640
ONT_simulated_read_15654463	chr9	+	1395	9	ISM	ENSMUSG00000032193.10	ENSMUST00000213114.2	4318	17	9	10461	9	-10461	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCAGTCTGCTCCCCAAC	NA	NA	NA	NA	NA	NA	NA	NA	21634936	21650750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681
ONT_simulated_read_15655275	chr5	+	1696	17	ISM	ENSMUSG00000029221.16	ENSMUST00000162372.8	5711	18	10	5771	10	-5768	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGAACAATTAGAAGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	67464307	67510015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_67464541_67473020_67473189_67482016_67482077_67484195_67484296_67485040_67485134_67485784_67485868_67487235_67487295_67490396_67490465_67491908_67492012_67497293_67497350_67499436_67499573_67501872_67501913_67502968_67503041_67503468_67503577_67505262_67505429_67507124_67507255_67509994
ONT_simulated_read_15655428	chr13	+	1406	1	ISM	ENSMUSG00000091264.4	ENSMUST00000165561.4	4483	2	23924	1404	23924	-1404	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACACCTTATGGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	41427243	41428649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_41427200_41428600
ONT_simulated_read_15656135	chr1	+	1587	1	ISM	ENSMUSG00000033701.14	ENSMUST00000035560.9	5592	8	128869	2753	128865	-2753	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCGTTCATTTAAACATG	NA	NA	NA	NA	NA	NA	NA	NA	155562736	155564323	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_155562700_155564300
ONT_simulated_read_15660352	chr9	+	3967	4	NIC	ENSMUSG00000007656.14	novel	3963	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGTTTTGTCTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	74944895	74967595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_74945002_74945188_74945248_74959514_74959638_74963916
ONT_simulated_read_15661004	chr3	+	255	1	ISM	ENSMUSG00000027827.18	ENST00000618897.4	3652	13	552	268519	51	-267191	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAATCCCCCCAACTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	65016855	65017110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_65016900_65017100
ONT_simulated_read_1566284	chr19	+	1050	8	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	0	1142	0	-760	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	234	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGCGTAAGTACTCCAAT	NA	NA	NA	NA	NA	NA	NA	NA	8944404	8954701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681
ONT_simulated_read_15667128	chr7	-	107	1	Antisense	novelGene_ENSMUSG00000042918.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGGAACAGAAGCCGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	45293823	45293716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr7_-_45293700_45293800
ONT_simulated_read_15668739	chr3	-	752	5	ISM	ENSMUSG00000028108.17	ENSMUST00000117507.10	1901	11	1708	1823	1706	-1822	internal_fragment	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCCACGCAACCTCCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	95645173	95643281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95643534_95643783_95644104_95644324_95644370_95644944_95645026_95645119
ONT_simulated_read_15672681	chr15	-	831	4	ISM	ENSMUSG00000022992.18	ENSMUST00000230542.2	3596	10	7608	1503	7588	-340	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGAGACATTCTGTAATG	NA	NA	NA	NA	NA	NA	NA	NA	98424537	98417041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455
ONT_simulated_read_15673273	chrX	-	716	6	ISM	ENSMUSG00000031167.17	ENSMUST00000115621.9	1338	7	808	379	607	-370	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAATATTTTTCCTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	8011311	8008976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193
ONT_simulated_read_15674349	chr11	-	241	1	NIC	ENSMUSG00000020814.14	novel	757	5	NA	NA	9016	0	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTTTGCTCCCCACAGC	NA	NA	NA	NA	NA	NA	NA	NA	116698795	116698554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_116698600_116698800
ONT_simulated_read_15675141	chr12	+	1086	10	ISM	ENSMUSG00000007411.17	ENST00000678237.1	3253	16	520	27149	0	-26575	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCCAGTCTCCTCATCAC	NA	NA	NA	NA	NA	NA	NA	NA	111541484	111595474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_111541536_111559010_111559203_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395
ONT_simulated_read_15675689	chr7	-	2187	4	ISM	ENSMUSG00000030583.17	ENSMUST00000183096.8	7713	23	104310	66907	-33332	-65163	internal_fragment	TRUE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGAGCTCAGAGGAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	29100575	29086709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_29086753_29087387_29087577_29096575_29096707_29098751
ONT_simulated_read_15677687	chr6	-	670	1	NIC	ENSMUSG00000029922.16	novel	2992	8	NA	NA	8729	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1364	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGTGAAATGTCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	39378357	39377687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_39377700_39378400
ONT_simulated_read_15679073	chr6	-	237	3	ISM	ENSMUSG00000030216.13	ENSMUST00000116514.4	2739	12	2686	9226	2686	-9226	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGATATTTACAAAGAACTG	NA	NA	NA	NA	NA	NA	NA	NA	136802545	136799877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_136799989_136801327_136801422_136802513
ONT_simulated_read_15681069	chr10	+	2093	10	ISM	ENSMUSG00000020024.8	ENSMUST00000020212.6	3639	16	51430	230	51430	-230	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAGCAAACGGAAGCTTAA	NA	NA	NA	NA	NA	NA	NA	NA	94575945	94626485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_94576051_94584802_94584918_94586120_94586266_94586371_94586522_94602303_94602380_94604680_94604839_94606806_94606937_94622605_94622710_94624508_94624699_94625565
ONT_simulated_read_15682209	chr2	+	1351	10	FSM	ENSMUSG00000038696.15	ENST00000394063.5	2865	10	41	1473	0	-89	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAACAAAGAAAACTGA	NA	NA	NA	NA	NA	NA	NA	NA	34296897	34513487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_34297102_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
ONT_simulated_read_1568580	chr1	-	553	1	ISM	ENSMUSG00000026024.15	ENSMUST00000027178.13	6342	34	73035	718	29952	414	mono-exon	FALSE	NA	NA	NA	NA	NA	215	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAACTGTAGTTTTAACC	NA	NA	NA	NA	NA	NA	NA	NA	59203355	59202802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_59202800_59203400
ONT_simulated_read_15687304	chr4	+	594	1	FSM	ENSMUSG00000070934.7	ENSMUST00000091064.8	1618	1	0	1024	0	-1024	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTCACCTGACGCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	86493904	86494498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_86493900_86494500
ONT_simulated_read_15689595	chrM	-	353	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	0	166	0	-166	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGGGAGATTGGTTGA	NA	NA	NA	NA	NA	NA	NA	NA	14070	13717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrM_-_13700_14100
ONT_simulated_read_15690903	chr10	-	2833	13	ISM	ENSMUSG00000037012.19	ENSMUST00000099691.11	4278	18	44446	388	44446	-135	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCAGTCCTGTGGGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	62131875	62105021	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774
ONT_simulated_read_15693370	chr4	-	1718	12	ISM	ENSMUSG00000040183.14	ENST00000522441.5	2364	16	36964	86	33274	-86	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAGGATGAGGCCACATT	NA	NA	NA	NA	NA	NA	NA	NA	32827168	32806196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_32806643_32808683_32808811_32810197_32810312_32815234_32815388_32816910_32817097_32817418_32817551_32818604_32818710_32821256_32821335_32822152_32822252_32823405_32823505_32824395_32824495_32827088
ONT_simulated_read_15694521	chr12	+	708	1	ISM	ENSMUSG00000035597.20	ENSMUST00000120580.8	4069	14	26346	0	26346	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCCTGTGGTCTCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	65109452	65110160	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_65109500_65110200
ONT_simulated_read_15695427	chr19	-	1138	11	ISM	ENSMUSG00000024908.16	ENST00000534534.5	2950	19	90868	711	59394	-711	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCACCCAGGGGCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	3534852	3506960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3528277_3528365_3534830
ONT_simulated_read_1569787	chr7	+	949	5	FSM	ENSMUSG00000030643.15	ENST00000260056.6	1399	5	299	151	299	-151	multi-exon	FALSE	canonical	NA	NA	NA	NA	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGCACTAAGCGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	92426790	92485368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_92426899_92469190_92469292_92473005_92473090_92478733_92478918_92484896
ONT_simulated_read_15698250	chr9	-	519	2	ISM	ENSMUSG00000064145.13	ENSMUST00000013338.14	3924	16	43996	1744	43996	-1744	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCACCCTTTAGCTA	NA	NA	NA	NA	NA	NA	NA	NA	108482583	108481884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_108482353_108482532
ONT_simulated_read_15698584	chr14	-	2733	1	NIC	ENSMUSG00000021930.15	novel	4002	5	NA	NA	21388	-517	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATTTATTTTATTTACA	NA	NA	NA	NA	NA	NA	NA	NA	61772691	61769958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_61770000_61772700
ONT_simulated_read_15699636	chr1	-	520	4	ISM	ENSMUSG00000025978.15	ENSMUST00000114428.3	2012	6	504	4899	504	-4899	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCACTGTAATGGAGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	55265437	55245708	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_55245775_55250308_55250421_55253278_55253463_55265279
ONT_simulated_read_15700143	chr16	-	396	2	ISM	ENSMUSG00000062203.16	ENSMUST00000080030.14	2898	15	31456	601	31456	-601	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGTTGAATTTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	11040617	11038516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_11038744_11040448
ONT_simulated_read_15700415	chr6	-	371	1	ISM	ENSMUSG00000053907.11	ENSMUST00000205335.2	3387	8	6265	122	1749	-122	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGCTTGCCCTAAGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	72410274	72409903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_72409900_72410300
ONT_simulated_read_15701042	chr11	+	817	6	ISM	ENSMUSG00000020128.16	ENST00000354504.7	2972	19	9120	14692	9120	-14692	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAACTAGCAAGTAACATC	NA	NA	NA	NA	NA	NA	NA	NA	21227902	21255688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_21228061_21241032_21241160_21245340_21245397_21248753_21248851_21249977_21250319_21255650
ONT_simulated_read_15703821	chr5	-	2656	1	ISM	ENSMUSG00000038593.19	ENSMUST00000111738.8	5717	14	22638	1319	22638	-1319	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCCCTGCACAAGACTGA	NA	NA	NA	NA	NA	NA	NA	NA	122379885	122377229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_122377200_122379900
ONT_simulated_read_15703935	chr8	+	1436	1	ISM	ENSMUSG00000031618.14	ENSMUST00000109913.9	5916	9	8501	335305	0	-332823	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGATAGTAGCTGTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	77634900	77636336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_77634900_77636300
ONT_simulated_read_15708795	chr16	-	242	1	ISM	ENSMUSG00000022972.11	ENSMUST00000023694.11	1430	7	9064	0	8673	0	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGTGTCATGAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	90722938	90722696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_90722700_90722900
ONT_simulated_read_15708920	chr9	-	1752	1	ISM	ENSMUSG00000032018.15	ENSMUST00000052725.15	4787	6	8483	2427	8427	711	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCACTGTGTGCAAACATC	NA	NA	NA	NA	NA	NA	NA	NA	42167069	42165317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_42165300_42167100
ONT_simulated_read_15709556	chr14	+	235	1	ISM	ENSMUSG00000019297.10	ENSMUST00000019441.9	3694	10	9573	0	9573	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGCAGTTCTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	55992722	55992957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_55992700_55993000
ONT_simulated_read_1571570	chr6	-	343	2	ISM	ENSMUSG00000030315.16	ENST00000424529.6	749	4	3418	101	3418	-101	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	413	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACTCCCCCTCTGTGGTC	NA	NA	NA	NA	NA	NA	NA	NA	114839813	114839151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_114839398_114839716
ONT_simulated_read_15719747	chr12	-	547	1	ISM	ENSMUSG00000020671.10	ENSMUST00000021001.10	3513	6	60136	1859	60136	-1859	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGTGGAAAGGAACGTCT	NA	NA	NA	NA	NA	NA	NA	NA	3299833	3299286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_3299300_3299800
ONT_simulated_read_157202	chr14	-	510	3	ISM	ENSMUSG00000058351.12	ENSMUST00000064032.10	791	4	4304	0	4182	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGCCATCATTCTTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	30846566	30810615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_30810984_30845678_30845733_30846478
ONT_simulated_read_15720260	chr2	-	492	1	NIC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	5520	49	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTGATAGGTATCTAAA	NA	NA	NA	NA	NA	NA	NA	NA	106795216	106794724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_106794700_106795200
ONT_simulated_read_15720710	chr14	-	472	3	ISM	ENSMUSG00000021792.16	ENSMUST00000022317.15	1537	6	14790	733	14790	-733	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGATGAGCTGTGCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	40720942	40716429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_40716595_40719669_40719835_40720800
ONT_simulated_read_15720721	chr15	-	140	2	ISM	ENSMUSG00000022574.8	ENST00000426292.7	1498	12	2601	258	2601	-258	internal_fragment	FALSE	canonical	NA	NA	NA	NA	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAGCCCTGCACTGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	75763482	75763264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75763351_75763428
ONT_simulated_read_15721549	chr11	+	1354	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	0	272	0	-272	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGAAGGGGGGCTGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	120653619	120654973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_120653600_120655000
ONT_simulated_read_15721667	chr4	-	749	4	ISM	ENSMUSG00000037306.14	ENSMUST00000054096.13	4715	12	135189	1889	135189	-1889	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTCCTCTGTGAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	134296412	134290889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_134291144_134291815_134291932_134293138_134293312_134296206
ONT_simulated_read_15722661	chr10	+	407	4	ISM	ENSMUSG00000020111.16	ENSMUST00000092508.12	2294	13	124593	843	124593	-843	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCATGTGGAAATGTGCC	NA	NA	NA	NA	NA	NA	NA	NA	59663042	59699102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_59663149_59675496_59675606_59697384_59697475_59699000
ONT_simulated_read_15724194	chr19	-	679	5	ISM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	8179	10769	8179	-10769	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGAGAGAGAAGGTTCG	NA	NA	NA	NA	NA	NA	NA	NA	5337304	5334728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096
ONT_simulated_read_15724362	chr16	-	810	7	ISM	ENSMUSG00000022515.7	ENSMUST00000023157.6	2398	17	16747	514	16747	-514	internal_fragment	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACAGATGCTGAATGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	4765290	4759813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128
ONT_simulated_read_1572448	chr1	+	446	2	ISM	ENSMUSG00000003464.14	ENSMUST00000075895.9	1917	8	7205	716	7198	-716	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTACACATGGCAGTACTC	NA	NA	NA	NA	NA	NA	NA	NA	171961526	171962134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_171961612_171961773
ONT_simulated_read_15727661	chr17	-	2184	15	ISM	ENSMUSG00000052752.16	ENSMUST00000088464.12	2504	20	5275	-117	5275	117	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGCTGAGCTCCATTACC	NA	NA	NA	NA	NA	NA	NA	NA	24732907	24727706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872
ONT_simulated_read_15729448	chr10	-	116	1	ISM	ENSMUSG00000019987.10	ENST00000673427.1	980	4	5036	429	5036	-427	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGCCAGGGACTGACTAC	NA	NA	NA	NA	NA	NA	NA	NA	24791661	24791545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_24791500_24791700
ONT_simulated_read_15730918	chr5	-	864	8	ISM	ENSMUSG00000029472.14	ENSMUST00000199406.5	2413	17	3315	11743	3315	-11739	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCACTGCAACAAGCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	122956028	122937532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883
ONT_simulated_read_15732352	chr6	-	452	4	ISM	ENSMUSG00000030035.15	ENST00000393972.7	1325	5	187	833	0	-434	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTGAGTGACCTGAAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	83098255	83096850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_83097026_83097165_83097269_83097752_83097855_83098183
ONT_simulated_read_15733306	chr11	-	458	3	ISM	ENSMUSG00000018405.8	ENSMUST00000018549.8	2477	5	4491	1230	4491	-1230	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTCCTCAGGCTTGGATGT	NA	NA	NA	NA	NA	NA	NA	NA	84705850	84705116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_84705338_84705514_84705635_84705733
ONT_simulated_read_15733928	chr6	-	745	2	ISM	ENSMUSG00000038507.7	ENSMUST00000038398.7	3231	12	29224	634	29224	-634	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTCAGTCTCCTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	39066059	39063977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_39064575_39065911
ONT_simulated_read_15734243	chr15	-	1089	1	ISM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	80184	316	51240	-315	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCTGCGCACTGCACCTC	NA	NA	NA	NA	NA	NA	NA	NA	77646191	77645102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_77645100_77646200
ONT_simulated_read_15734761	chr4	+	454	5	ISM	ENSMUSG00000028863.14	ENSMUST00000055213.11	872	6	1037	259	1011	-259	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCCATCGAGAAGTGCACA	NA	NA	NA	NA	NA	NA	NA	NA	124979980	125003423	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125003369
ONT_simulated_read_15735700	chr11	-	254	1	NIC	ENSMUSG00000025158.8	novel	2118	8	NA	NA	1455	326	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAAAGATGCTGAGTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	120672730	120672476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_120672500_120672700
ONT_simulated_read_15736022	chr12	-	349	3	ISM	ENSMUSG00000021234.10	ENST00000555916.1	532	4	4	7681	4	-1498	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTCAAGGAATCTCACCG	NA	NA	NA	NA	NA	NA	NA	NA	84395507	84393588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_84393710_84395050_84395151_84395379
ONT_simulated_read_15736813	chr3	+	804	5	FSM	ENSMUSG00000015749.13	ENST00000533654.5	851	5	88	-41	-41	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATTCTCATTCATCTTC	NA	NA	NA	NA	NA	NA	NA	NA	95836852	95852754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95845193_95845352_95852491
ONT_simulated_read_15738978	chr13	+	234	1	FSM	ENSMUSG00000043889.7	ENSMUST00000082300.5	1117	1	0	883	0	-883	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGACGACATGGAGAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	81212802	81213036	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_81212800_81213000
ONT_simulated_read_1574435	chr7	-	579	6	NIC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	1057	-2	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCCGCCAACTAGGGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	44776993	44775322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776919
ONT_simulated_read_15746601	chr5	-	1963	15	ISM	ENSMUSG00000041890.18	ENSMUST00000086564.11	2984	20	8985	432	8957	-137	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTCTGTCCTGTCAGATT	NA	NA	NA	NA	NA	NA	NA	NA	114902538	114868067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407
ONT_simulated_read_15749283	chr11	-	1005	10	ISM	ENSMUSG00000075528.14	ENSMUST00000070395.9	1516	12	384	1348	384	-1348	internal_fragment	FALSE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCTCTTCTTACTGGC	NA	NA	NA	NA	NA	NA	NA	NA	101308057	101299012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302026_101302119_101302277_101302765_101302824_101304762_101304923_101307928
ONT_simulated_read_15751091	chr9	-	346	1	ISM	ENSMUSG00000039163.11	ENSMUST00000044220.11	1169	4	84829	481	84815	92	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACAGTGCTAACTGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	117894416	117894070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_117894100_117894400
ONT_simulated_read_15753179	chrX	-	1273	1	FSM	ENSMUSG00000082319.4	ENSMUST00000118948.2	2347	1	0	1074	0	-1074	mono-exon	FALSE	NA	NA	NA	NA	NA	593	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGGGGTCAGGGAGATGG	NA	NA	NA	NA	NA	NA	NA	NA	80866336	80865063	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_80865100_80866300
ONT_simulated_read_15753833	chr11	-	408	5	ISM	ENSMUSG00000025377.15	ENSMUST00000093901.12	2770	13	1149	4999	1149	-4999	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACTGGGGACCACCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	119988408	119986355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_119986436_119986629_119986698_119987406_119987501_119987703_119987796_119988334
ONT_simulated_read_1575494	chr1	+	686	6	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	21538	28246	21538	-28126	internal_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAGAACAGGTCAATGAC	NA	NA	NA	NA	NA	NA	NA	NA	150290538	150297440	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_150290566_150291819_150291983_150293132_150293268_150293698_150293840_150295588_150295755_150297386
ONT_simulated_read_1575844	chr2	-	1260	5	ISM	ENSMUSG00000090213.2	ENSMUST00000006587.7	2329	6	6874	840	6874	-256	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAAGGGCTTGGTCATCT	NA	NA	NA	NA	NA	NA	NA	NA	167496602	167485367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_167486103_167486683_167486897_167487951_167488097_167488887_167488980_167496527
ONT_simulated_read_15762383	chr5	-	1142	11	ISM	ENSMUSG00000028944.15	ENSMUST00000114975.8	2205	12	19317	883	19317	79	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCAATGCTGTATGTCA	NA	NA	NA	NA	NA	NA	NA	NA	25094150	25068628	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079
ONT_simulated_read_15762409	chr5	-	1961	17	ISM	ENSMUSG00000041890.18	ENSMUST00000086564.11	2984	20	6939	593	6911	-298	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTGCCCATAGACTATAC	NA	NA	NA	NA	NA	NA	NA	NA	114904584	114868228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512
ONT_simulated_read_15763042	chr2	-	923	9	ISM	ENSMUSG00000017670.17	ENSMUST00000071699.11	3247	20	7838	4479	7251	-4479	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCTGCCCTCTAAACCC	NA	NA	NA	NA	NA	NA	NA	NA	165150985	165137515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_165137547_165138760_165138898_165139266_165139376_165139460_165139566_165140128_165140264_165140539_165140663_165143860_165143912_165146819_165146899_165150832
ONT_simulated_read_15766842	chr2	+	1083	10	ISM	ENSMUSG00000002718.15	ENSMUST00000168599.8	2748	23	12544	5826	12544	-5826	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCGTCTTCCTATATGG	NA	NA	NA	NA	NA	NA	NA	NA	166769643	166781887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829
ONT_simulated_read_15769092	chr19	-	2104	19	NIC	ENSMUSG00000024942.20	novel	3062	22	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGATAATCCCCCCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	6064498	6040021	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6047720_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230
ONT_simulated_read_15769674	chr8	+	189	3	ISM	ENSMUSG00000031839.8	ENSMUST00000212468.2	638	5	0	2708	0	-2708	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACGACCTGGAGAAGAATAT	NA	NA	NA	NA	NA	NA	NA	NA	120071260	120072374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_120071360_120071674_120071742_120072351
ONT_simulated_read_15770841	chr14	+	741	7	ISM	ENSMUSG00000054423.15	ENST00000283269.13	4561	28	333434	81014	333221	-81014	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGCAGCGGCTAAAACTG	NA	NA	NA	NA	NA	NA	NA	NA	9980245	10015544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_9980287_9980658_9980783_9983169_9983239_9996247_9996355_10002583_10002741_10003762_10003905_10015443
ONT_simulated_read_1577450	chr11	+	1397	9	ISM	ENSMUSG00000000632.14	ENSMUST00000000646.14	3964	16	37999	2231	37999	-2231	internal_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTCACCCAGCAGGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	77859836	77867635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_77859914_77863673_77863843_77863919_77864087_77864608_77864804_77865016_77865156_77865265_77865463_77865971_77866167_77867297_77867490_77867569
ONT_simulated_read_15775687	chr13	-	3175	18	FSM	ENSMUSG00000021670.15	ENST00000343975.9	3462	18	0	287	0	-287	multi-exon	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATATCAGAGCTCTTAGT	NA	NA	NA	NA	NA	NA	NA	NA	96803218	96786441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028
ONT_simulated_read_15775938	chr12	-	730	7	ISM	ENSMUSG00000001729.15	ENSMUST00000001780.10	2690	14	14999	3112	12287	-2260	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACGAGATGATGTGTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	112625711	112623366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_112623426_112623501_112623631_112623701_112623828_112624100_112624170_112624831_112624898_112624979_112625112_112625562
ONT_simulated_read_15776046	chr5	-	993	10	ISM	ENSMUSG00000029617.11	ENSMUST00000031621.11	1769	15	5593	277	5552	-270	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCAGCAGAACATCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	143946078	143925003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_143925068_143927455_143927584_143928289_143928449_143929326_143929445_143930043_143930078_143934980_143935093_143935361_143935424_143938194_143938277_143940860_143941037_143946020
ONT_simulated_read_15776564	chr4	+	896	10	ISM	ENSMUSG00000028708.17	ENSMUST00000019677.12	2543	13	0	4573	0	-4573	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTATGACAAGCGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	115696394	115731874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816
ONT_simulated_read_15777504	chr4	-	310	1	ISM	ENSMUSG00000028840.11	ENSMUST00000030644.8	1994	3	1786	208	1786	-208	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACCTGTTAGCCACTTGA	NA	NA	NA	NA	NA	NA	NA	NA	133971117	133970807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_133970800_133971100
ONT_simulated_read_15778177	chr12	-	634	8	ISM	ENSMUSG00000021038.18	ENST00000327028.8	1417	18	14535	1569	14535	-1569	internal_fragment	FALSE	canonical	NA	NA	NA	NA	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAGGAGCAAAGTAGACAA	NA	NA	NA	NA	NA	NA	NA	NA	87296236	87288076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161
ONT_simulated_read_15780613	chr6	+	986	9	ISM	ENSMUSG00000029757.17	ENSMUST00000115554.4	2518	16	31607	66090	31607	-66081	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCCAGAGGACCCCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	5757418	5961949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_5757495_5767029_5767145_5769700_5769792_5800774_5800891_5905104_5905195_5913315_5913479_5915829_5915930_5923164_5923291_5961840
ONT_simulated_read_15782486	chr11	-	1343	1	ISM	ENSMUSG00000046417.15	ENSMUST00000057194.9	1984	4	42297	0	42297	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGGACTGTGCTTTATTAG	NA	NA	NA	NA	NA	NA	NA	NA	62497052	62495709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_62495700_62497100
ONT_simulated_read_15783623	chr19	+	825	5	FSM	ENSMUSG00000024818.16	ENST00000534028.5	989	5	164	0	-27	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCAGGCGATACTGGCAA	NA	NA	NA	NA	NA	NA	NA	NA	5928655	5935022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5928720_5929876_5929921_5930467_5930654_5934372_5934632_5934750
ONT_simulated_read_15785561	chr1	-	765	1	NIC	ENSMUSG00000026705.17	novel	4072	12	NA	NA	40999	-1373	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTGGCTCTCAGCCTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	160918082	160917317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_160917300_160918100
ONT_simulated_read_15788510	chr3	-	1646	1	ISM	ENSMUSG00000036513.16	ENSMUST00000160959.8	2992	5	4859	862	4859	-862	mono-exon	FALSE	NA	NA	NA	NA	NA	350	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACACCAAGATAAAAGCATAT	NA	NA	NA	NA	NA	NA	NA	NA	57554277	57552631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_57552600_57554300
ONT_simulated_read_1579087	chr5	-	320	2	ISM	ENSMUSG00000070733.14	ENSMUST00000094700.11	9852	60	106562	13852	106562	-13852	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGGCTTACGAGGACGA	NA	NA	NA	NA	NA	NA	NA	NA	73198917	73192405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_73192497_73198688
ONT_simulated_read_15792378	chr9	+	1946	15	ISM	ENSMUSG00000032612.15	ENSMUST00000035237.12	3662	22	60	13223	0	-13198	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGCAATGGCTCTAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	108225111	108256521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243028_108243170_108243959_108244078_108245017_108245192_108248099_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463
ONT_simulated_read_15794496	chr10	+	685	5	ISM	ENSMUSG00000025373.15	ENSMUST00000096386.13	3144	7	0	3834	0	-3834	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTAAGCACCTGCGCTC	NA	NA	NA	NA	NA	NA	NA	NA	128247614	128272373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_128247695_128250987_128251171_128264459_128264573_128271181_128271454_128272336
ONT_simulated_read_15794521	chr8	-	652	1	ISM	ENSMUSG00000036306.14	ENSMUST00000185176.8	5019	4	48085	2820	4813	14	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAGGGCTGGGGACTGGA	NA	NA	NA	NA	NA	NA	NA	NA	69588792	69588140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_69588100_69588800
ONT_simulated_read_15795372	chr14	-	175	2	ISM	ENSMUSG00000021831.10	ENST00000395686.8	2224	14	24100	7895	24100	-7895	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCCACGAAGGCTGAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	45531855	45530554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_45530635_45531760
ONT_simulated_read_1579745	chr4	+	480	4	ISM	ENSMUSG00000045751.17	ENSMUST00000138567.9	1350	5	1434	208	1352	-208	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATGAAGCTCTGATCTG	NA	NA	NA	NA	NA	NA	NA	NA	24497895	24503205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_24497964_24500036_24500087_24502747_24502836_24502931
ONT_simulated_read_15799333	chr11	-	341	3	ISM	ENSMUSG00000001552.15	ENSMUST00000107403.2	2386	13	15897	7311	15897	-7311	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGCACTTGACAAGCAACA	NA	NA	NA	NA	NA	NA	NA	NA	100272678	100270432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100270452_100271369_100271515_100272501
ONT_simulated_read_15800558	chr6	-	1531	6	ISM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	5671	192	1601	-192	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	679	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCACCAAAGAACTGTCAGC	NA	NA	NA	NA	NA	NA	NA	NA	83288917	83282864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793
ONT_simulated_read_15801196	chr12	-	1947	5	ISM	ENSMUSG00000021114.10	ENSMUST00000021536.9	3667	9	11855	1233	11775	1028	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	148	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAGACTAGCAGGCTAACA	NA	NA	NA	NA	NA	NA	NA	NA	78896557	78888731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78895274_78896513
ONT_simulated_read_15801698	chr14	-	223	1	Antisense	novelGene_ENSMUSG00000022216.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGGCCCGCCTCCCAACC	NA	NA	NA	NA	NA	NA	NA	NA	55816039	55815816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr14_-_55815800_55816000
ONT_simulated_read_15802213	chr11	-	666	3	ISM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	6038	73	6038	-73	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGTAGCCTGTGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	106140867	106140040	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106140443_106140529_106140625_106140698
ONT_simulated_read_15803046	chr3	+	1374	1	FSM	ENSMUSG00000091421.4	ENSMUST00000169025.4	733	1	0	-641	0	641	mono-exon	FALSE	NA	NA	NA	NA	NA	1512	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAAATGTTTTAGGCAA	NA	NA	NA	NA	NA	NA	NA	NA	92596732	92598106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_92596700_92598100
ONT_simulated_read_15804839	chrX	+	667	1	ISM	ENSMUSG00000031156.19	ENSMUST00000115660.12	3094	4	8469	1329	8164	0	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCATGACCCTGTGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	7758735	7759402	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_7758700_7759400
ONT_simulated_read_1580673	chr1	-	583	7	ISM	ENSMUSG00000026309.15	ENST00000622223.4	937	9	8056	219	8056	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCTGTTGATGCCCGCT	NA	NA	NA	NA	NA	NA	NA	NA	91318376	91303775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91318328
ONT_simulated_read_15807837	chr5	-	992	11	ISM	ENSMUSG00000023079.15	ENSMUST00000100650.10	3487	29	65656	18239	65326	-18239	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGATGAGGAAGAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	134419784	134405746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675
ONT_simulated_read_15807945	chr13	+	2312	12	ISM	ENSMUSG00000021413.10	ENSMUST00000077853.5	7844	15	12899	3691	12899	-3691	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAATCAACTTGCTATA	NA	NA	NA	NA	NA	NA	NA	NA	35072183	35086356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375
ONT_simulated_read_1580956	chr2	-	577	1	NIC	ENSMUSG00000070953.14	novel	2968	8	NA	NA	17906	258	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCCTAGTGCAAATAATTC	NA	NA	NA	NA	NA	NA	NA	NA	34669542	34668965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_34669000_34669500
ONT_simulated_read_15810724	chr2	-	540	1	NIC	ENSMUSG00000085741.9	novel	904	2	NA	NA	18004	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTAGCTTCTCCTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	156686810	156686270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_156686300_156686800
ONT_simulated_read_15811821	chr14	-	1474	1	FSM	ENSMUSG00000105194.2	ENSMUST00000100598.2	864	1	0	-610	0	610	mono-exon	FALSE	NA	NA	NA	NA	NA	392	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAATCAGGGTGCATTTA	NA	NA	NA	NA	NA	NA	NA	NA	53411047	53409573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_53409600_53411000
ONT_simulated_read_15815190	chr7	+	1721	1	FSM	ENSMUSG00000041117.9	ENSMUST00000094805.5	4809	1	0	3088	0	-3088	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGCTTCCTTCCGTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	16726632	16728353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_16726600_16728400
ONT_simulated_read_15816360	chr7	-	704	6	ISM	ENSMUSG00000035596.15	ENSMUST00000038608.14	2878	8	635	8186	635	-8186	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCAGCCTGAGGCCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	3695887	3688973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695739
ONT_simulated_read_15821218	chr16	-	1345	16	ISM	ENSMUSG00000022685.10	ENSMUST00000058884.10	2906	24	16333	822	16228	-822	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGGGGAGTTTTGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	13469701	13356645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661
ONT_simulated_read_15822827	chr18	-	1277	8	ISM	ENSMUSG00000061802.7	ENST00000672877.1	2158	13	50547	38971	50547	-38971	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCACGATGTTGTATGTG	NA	NA	NA	NA	NA	NA	NA	NA	7222730	7127397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_7127434_7129398_7129588_7181733_7181849_7211398_7211642_7214568_7214724_7216934_7217046_7217747_7217991_7222545
ONT_simulated_read_15826120	chr13	-	1167	11	ISM	ENSMUSG00000025878.17	ENSMUST00000099496.4	1678	13	14605	253	-8241	-212	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGCAGAGGAAGGAGGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	55233508	55176360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55225215_55225341_55233422
ONT_simulated_read_1582816	chr4	-	1366	1	FSM	ENSMUSG00000081309.4	ENSMUST00000117674.2	615	1	0	-751	0	751	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCCAAGTTTCAATAGA	NA	NA	NA	NA	NA	NA	NA	NA	40913355	40911989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_40912000_40913400
ONT_simulated_read_15829066	chr10	-	351	1	ISM	ENSMUSG00000035890.10	ENSMUST00000047203.9	1639	9	7740	347	7611	225	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCGTCTTAACCTCACCC	NA	NA	NA	NA	NA	NA	NA	NA	79595046	79594695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_79594700_79595000
ONT_simulated_read_15829922	chr16	-	972	1	NIC	ENSMUSG00000022500.16	novel	2235	4	NA	NA	14527	743	mono-exon	FALSE	NA	NA	NA	NA	NA	558	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTCTGTTTTTCTTTGAC	NA	NA	NA	NA	NA	NA	NA	NA	10778916	10777944	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_10777900_10778900
ONT_simulated_read_15829953	chr2	-	1789	1	NIC	ENSMUSG00000026872.19	novel	9123	9	NA	NA	26046	-7766	mono-exon	FALSE	NA	NA	NA	NA	NA	582	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCATTTCCCCCTGCCACT	NA	NA	NA	NA	NA	NA	NA	NA	44888008	44886219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_44886200_44888000
ONT_simulated_read_1582999	chr11	-	953	9	ISM	ENSMUSG00000069631.15	ENST00000638276.1	1536	12	6345	1099	4	-201	internal_fragment	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCCGCTCCATCGCCAAC	NA	NA	NA	NA	NA	NA	NA	NA	106078004	106055705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106075387_106075446_106077926
ONT_simulated_read_15830918	chr6	-	825	3	ISM	ENSMUSG00000079560.14	ENST00000317201.7	2759	5	17234	1534	17234	-1534	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCAACCTGCTGAACCTC	NA	NA	NA	NA	NA	NA	NA	NA	52160719	52147578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_52147723_52149100_52149750_52160687
ONT_simulated_read_15838735	chr1	+	1407	6	ISM	ENSMUSG00000026027.14	ENSMUST00000027185.11	2960	12	17536	660	17536	-660	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTGTAAATTATAGATCAT	NA	NA	NA	NA	NA	NA	NA	NA	59030216	59034214	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_59030296_59031362_59031535_59031809_59031915_59032051_59032297_59032719_59032763_59033451
ONT_simulated_read_1583991	chr2	+	1969	19	ISM	ENSMUSG00000026806.16	ENSMUST00000113853.3	3271	20	4443	836	4443	-836	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGGGGCCGTGGAGAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	28734913	28794747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_28735107_28735209_28735286_28736005_28736050_28737452_28737524_28738297_28738363_28744782_28744828_28746206_28746249_28747131_28747197_28748747_28748868_28748999_28749107_28749880_28750090_28750727_28750905_28753727_28753788_28764142_28764194_28765701_28765842_28771154_28771237_28776902_28777015_28782390_28782554_28794600
ONT_simulated_read_1584083	chr7	+	910	5	ISM	ENSMUSG00000005566.15	ENST00000341753.10	2582	15	5142	68	5142	-68	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCATCGTCCCCTCAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	12763630	12764884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
ONT_simulated_read_15842356	chr14	-	2586	11	ISM	ENSMUSG00000021870.18	ENSMUST00000038522.10	4501	23	91085	484	90963	-259	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGGAAGGCCAGTGAGTT	NA	NA	NA	NA	NA	NA	NA	NA	26163810	26134813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729
ONT_simulated_read_1584360	chr5	+	1908	5	ISM	ENSMUSG00000002748.8	ENSMUST00000002825.6	6492	19	10868	28338	10868	-28338	internal_fragment	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGATGTCCAGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	135226985	135246645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_135227170_135233843_135234046_135237896_135238019_135239594_135239793_135245443
ONT_simulated_read_15847390	chr12	-	714	5	ISM	ENSMUSG00000021068.18	ENST00000382043.8	4069	27	72737	3319	72735	-2124	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGCAGGAGGAGCTCGAA	NA	NA	NA	NA	NA	NA	NA	NA	70076893	70067657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_70067806_70072153_70072256_70073527_70073678_70074785_70074966_70076759
ONT_simulated_read_15847420	chr8	+	1048	10	ISM	ENSMUSG00000050357.10	ENST00000545661.5	4075	37	4348	4058	4348	-4058	internal_fragment	FALSE	canonical	NA	NA	NA	NA	205	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTGCACGCGGCTCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	106417537	106420717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_106417552_106417714_106417878_106417958_106418058_106418932_106419062_106419148_106419263_106419434_106419596_106419669_106419758_106419887_106420029_106420156_106420224_106420645
ONT_simulated_read_15847698	chr17	-	1306	1	ISM	ENSMUSG00000024006.18	ENSMUST00000009138.13	3351	14	35349	461	28045	377	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATTATTTGCACCTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	29191620	29190314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_29190300_29191600
ONT_simulated_read_15847773	chr7	-	941	4	ISM	ENSMUSG00000058420.9	ENSMUST00000203485.3	1932	7	11251	415	6589	-415	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGACATCATTCTTACGA	NA	NA	NA	NA	NA	NA	NA	NA	118036194	118007352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_118007404_118009146_118009268_118033055_118033676_118036045
ONT_simulated_read_15852561	chr2	+	258	3	ISM	ENSMUSG00000039041.16	ENSMUST00000061437.5	1535	10	669	2330	669	-2330	internal_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTGAACAACCCCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	179813946	179815749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_179814041_179814648_179814766_179815702
ONT_simulated_read_15853384	chrX	-	2157	13	ISM	ENSMUSG00000031328.17	ENSMUST00000033699.13	8312	47	6006	12297	5923	-12297	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGCTCTGAGGCAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	73284155	73279443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_73279824_73280348_73280612_73280727_73280846_73281026_73281197_73281287_73281379_73281461_73281623_73281709_73281834_73282704_73282849_73282939_73283054_73283257_73283452_73283551_73283689_73283810_73283935_73284018
ONT_simulated_read_15856768	chr3	+	232	1	NIC	ENSMUSG00000028128.14	novel	1872	6	NA	NA	5786	-5494	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTAGCTTGGTTTGTAA	NA	NA	NA	NA	NA	NA	NA	NA	121522971	121523203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_+_121523000_121523200
ONT_simulated_read_15857010	chr10	+	512	1	ISM	ENSMUSG00000078429.10	ENSMUST00000105256.10	4817	8	0	20741	0	-20741	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGTTAGATGGAACACGG	NA	NA	NA	NA	NA	NA	NA	NA	126814585	126815097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_126814600_126815100
ONT_simulated_read_15858945	chr15	+	2412	15	FSM	ENSMUSG00000033128.10	ENST00000325180.12	2403	15	-9	0	-9	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCTGCTCTTGTCACCCT	NA	NA	NA	NA	NA	NA	NA	NA	78761750	78778785	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_78761818_78765237_78765323_78766327_78766404_78767467_78767567_78768284_78768409_78769455_78769557_78770063_78770145_78772310_78772449_78772617_78772700_78775636_78775702_78776113_78776287_78776652_78776841_78777366_78777537_78777738_78777850_78777933
ONT_simulated_read_1586292	chr9	+	1459	8	ISM	ENSMUSG00000040875.13	ENST00000438237.6	2216	10	88752	110	0	-110	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACGCAGCCACAGAGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	114896346	115058972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_114896394_114996149_114996361_115004995_115005151_115036581_115036732_115045616_115046098_115052660_115052848_115055748_115055932_115058927
ONT_simulated_read_15863570	chr3	-	456	3	ISM	ENSMUSG00000027953.14	ENST00000484157.5	535	4	930	-1	930	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATGCAATAGGTTGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	89176518	89175731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_89175906_89175979_89176100_89176356
ONT_simulated_read_15863750	chr14	-	746	1	ISM	ENSMUSG00000022052.10	ENSMUST00000089230.7	4010	10	57212	431	55078	187	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTATGGTTTGGCTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	67252681	67251935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_67251900_67252700
ONT_simulated_read_1586489	chr16	-	509	1	ISM	ENSMUSG00000022687.13	ENST00000682979.1	4478	20	73072	216	35554	-210	mono-exon	FALSE	NA	NA	NA	NA	NA	215	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAAGGCCATCATGCCGCA	NA	NA	NA	NA	NA	NA	NA	NA	44306136	44305627	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_44305600_44306100
ONT_simulated_read_1586635	chr9	-	2582	12	ISM	ENSMUSG00000032376.13	ENSMUST00000174387.2	1901	14	45069	-983	18968	135	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAATTTTATGCAGAACA	NA	NA	NA	NA	NA	NA	NA	NA	66455219	66424373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66449794_66449909_66451227_66451311_66453025_66453108_66455153
ONT_simulated_read_15868091	chr4	-	1662	8	ISM	ENSMUSG00000008575.18	ENSMUST00000107248.8	3294	12	152064	0	151665	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAGGGAAAAAAAAAACAGT	NA	NA	NA	NA	NA	NA	NA	NA	82271880	82214284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_82215049_82228539_82228629_82238710_82238794_82241781_82241948_82245965_82246151_82248528_82248664_82268625_82268745_82271759
ONT_simulated_read_1587030	chr10	-	1346	1	NIC	ENSMUSG00000003348.11	novel	2682	4	NA	NA	14681	-576	mono-exon	FALSE	NA	NA	NA	NA	NA	207	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACAGTATCTGGGCTAAC	NA	NA	NA	NA	NA	NA	NA	NA	80523008	80521662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_80521700_80523000
ONT_simulated_read_15870625	chr3	-	509	4	ISM	ENSMUSG00000038170.16	ENST00000464103.5	600	5	337	0	171	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGCTGCCTTTTTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	97731639	97700437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_97700637_97700800_97700925_97704047_97704125_97731530
ONT_simulated_read_15872636	chr8	-	119	1	ISM	ENSMUSG00000057788.14	ENSMUST00000008004.10	2137	13	8829	676	8829	-676	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGAGCCAGCCCAGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	70746310	70746191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70746200_70746300
ONT_simulated_read_15873040	chr4	+	117	1	ISM	ENSMUSG00000084761.2	ENSMUST00000155382.2	697	2	0	1922	0	1	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTACCTTTCCCTGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	41639377	41639494	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_41639400_41639500
ONT_simulated_read_15875932	chr2	-	522	3	ISM	ENSMUSG00000063972.14	ENSMUST00000168098.8	5877	9	43909	7754	43909	-3523	internal_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCTATATCACAAGTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	38630618	38621139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_38621180_38628898_38629154_38630391
ONT_simulated_read_15875975	chr11	-	1388	5	ISM	ENSMUSG00000019173.12	ENSMUST00000107364.8	1915	6	18046	390	18046	-388	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGGGTGGGTGGGTAAGG	NA	NA	NA	NA	NA	NA	NA	NA	100610995	100606224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100606989_100607583_100607678_100608667_100608791_100609256_100609409_100610740
ONT_simulated_read_15880679	chr6	-	855	1	ISM	ENSMUSG00000079343.5	ENSMUST00000068797.3	2662	11	10154	452	10154	-153	mono-exon	FALSE	NA	NA	NA	NA	NA	510	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGTGGGAGTATGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	124602890	124602035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124602000_124602900
ONT_simulated_read_15884325	chr4	-	1193	6	ISM	ENSMUSG00000042446.17	ENSMUST00000106108.9	7102	30	42122	49239	42122	-49239	internal_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCATTGTTACCATAAAC	NA	NA	NA	NA	NA	NA	NA	NA	126819806	126804970	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126805078_126808864_126809121_126809373_126809459_126816856_126817028_126817361_126817424_126819294
ONT_simulated_read_15886538	chr15	+	383	1	ISM	ENSMUSG00000008690.16	ENSMUST00000036987.12	3223	20	16725	0	16708	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTGATCCTCTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	89256646	89257029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_89256600_89257000
ONT_simulated_read_1588934	chr5	+	802	1	ISM	ENSMUSG00000019518.12	ENSMUST00000019662.11	3479	15	7141	485	7141	-485	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTGTTTCTGTAGAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	138177404	138178206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_138177400_138178200
ONT_simulated_read_15890597	chr7	-	125	2	ISM	ENSMUSG00000003380.12	ENST00000601891.5	509	4	730	109	730	-109	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTGCCTTCCACCAGATG	NA	NA	NA	NA	NA	NA	NA	NA	24671283	24669407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_24669435_24671185
ONT_simulated_read_15891307	chr7	-	1054	10	ISM	ENSMUSG00000038502.18	ENST00000599732.5	1539	13	2376	228	2376	-226	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACCAATATCCCTGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	44516678	44512723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44512869_44512958_44513157_44513806_44513912_44514035_44514094_44514185_44514260_44514336_44514427_44514895_44515052_44516233_44516342_44516483_44516542_44516616
ONT_simulated_read_15891356	chr4	+	1555	12	ISM	ENSMUSG00000028862.7	ENST00000374040.7	3976	28	6173	1423	6173	-1423	internal_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCGTGTTGGACTCGCT	NA	NA	NA	NA	NA	NA	NA	NA	132974512	132978694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_132974609_132974724_132974813_132974891_132975026_132975323_132975452_132975698_132975836_132976102_132976209_132976972_132977131_132977240_132977434_132977518_132977658_132977959_132978117_132978234_132978412_132978652
ONT_simulated_read_1589230	chr15	-	871	8	ISM	ENSMUSG00000023015.15	ENSMUST00000171702.8	3052	18	11826	8227	11826	-8226	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTTTGGTCTCCCATCCA	NA	NA	NA	NA	NA	NA	NA	NA	99537698	99526603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494
ONT_simulated_read_15893190	chr3	-	1411	5	ISM	ENSMUSG00000014599.11	ENSMUST00000120243.8	2097	9	9792	103	529	-103	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTACTCGTGCAGATTAAGA	NA	NA	NA	NA	NA	NA	NA	NA	107657766	107653013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_107653157_107654041_107654101_107654422_107654476_107655469_107656486_107657626
ONT_simulated_read_15893385	chr9	-	1909	1	NIC	ENSMUSG00000032030.17	novel	5942	18	NA	NA	49496	921	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACCACGTGGAGGATGGA	NA	NA	NA	NA	NA	NA	NA	NA	53529311	53527402	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_53527400_53529300
ONT_simulated_read_15902689	chr5	+	837	1	ISM	ENSMUSG00000019518.12	ENSMUST00000019662.11	3479	15	6948	643	6948	-643	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTGAGTGTGGTCCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	138177211	138178048	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_138177200_138178000
ONT_simulated_read_1590411	chr7	+	1484	15	NNC	ENSMUSG00000002963.18	novel	1447	15	NA	NA	-26	-8	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACTCTGTGCACAGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	44506817	44512065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511617_44511706_44511789_44511852_44511926
ONT_simulated_read_15905253	chr3	-	716	1	ISM	ENSMUSG00000050144.14	ENSMUST00000168755.7	3418	3	12230	1664	12230	-1663	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAACATCTGTGAATGAG	NA	NA	NA	NA	NA	NA	NA	NA	88320184	88319468	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_88319500_88320200
ONT_simulated_read_1591213	chr14	+	1872	16	ISM	ENSMUSG00000022211.10	ENSMUST00000076236.7	4602	40	6539	4277	6539	-4268	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTCCACCCCCACCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	55735088	55741448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_55735203_55735302_55735400_55735544_55735600_55735675_55735849_55736058_55736128_55736304_55736399_55736499_55736599_55736914_55737044_55737208_55737323_55737749_55737926_55738688_55738777_55738915_55739051_55739286_55739351_55739681_55739891_55740387_55740489_55741293
ONT_simulated_read_1591236	chr5	-	248	2	ISM	ENSMUSG00000025747.13	ENSMUST00000026846.11	3163	7	9461	4409	9461	-4409	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTTTCTTTCGGAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	30269154	30268233	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_30268410_30269082
ONT_simulated_read_15916050	chr5	-	1057	8	NNC	ENSMUSG00000029722.16	novel	2893	12	NA	NA	21076	-1076	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCCTGGTCTGCCGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	137661866	137649822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137659625_137659752_137661697
ONT_simulated_read_15920167	chr7	+	1981	10	ISM	ENSMUSG00000031016.10	ENSMUST00000033326.10	3419	11	0	3686	0	-3686	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGAGCTGGTGAAGCATTC	NA	NA	NA	NA	NA	NA	NA	NA	109721252	109738807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_109722133_109723662_109723869_109725013_109725075_109725202_109725376_109725907_109726030_109730035_109730183_109733961_109734058_109734844_109734931_109738355_109738527_109738768
ONT_simulated_read_1592026	chr11	-	771	6	ISM	ENSMUSG00000018501.18	ENSMUST00000037575.15	4246	24	32546	199	32546	-199	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGATGCTCAGCAGTACACC	NA	NA	NA	NA	NA	NA	NA	NA	62218071	62208821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931
ONT_simulated_read_1592286	chr8	-	747	2	ISM	ENSMUSG00000062991.10	ENSMUST00000208819.3	2246	13	190038	117	99247	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACCTAAATAAACACATAGA	NA	NA	NA	NA	NA	NA	NA	NA	32309172	32308055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_32308711_32309080
ONT_simulated_read_15924847	chr10	-	264	1	ISM	ENSMUSG00000019982.16	ENSMUST00000188495.8	3693	16	34648	1059	30203	-718	mono-exon	FALSE	NA	NA	NA	NA	NA	208	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAAAAGGATTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	21002156	21001892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_21001900_21002200
ONT_simulated_read_15925444	chr17	-	630	5	ISM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	5705	27790	5705	-27790	internal_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGAATTACCAGGCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	45738958	45730599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864
ONT_simulated_read_15925534	chr6	-	459	4	ISM	ENSMUSG00000029810.16	ENSMUST00000204073.3	986	7	5174	84	5017	-84	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCCCGGCCAAAGAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	48812897	48811023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_48811074_48811440_48811561_48812378_48812610_48812839
ONT_simulated_read_15926141	chr15	-	1067	8	ISM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	823	294	823	-294	internal_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGGGCCCTGGAGAAGATT	NA	NA	NA	NA	NA	NA	NA	NA	79966784	79962285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590
ONT_simulated_read_15926570	chr5	-	326	2	ISM	ENSMUSG00000070733.14	ENSMUST00000094700.11	9852	60	93929	29124	93929	-29124	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGCAAGCCAGATCCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	73211550	73207677	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_73207849_73211395
ONT_simulated_read_15926741	chr3	-	630	5	ISM	ENSMUSG00000027905.16	ENSMUST00000090680.11	2905	11	4814	1139	4814	-1139	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGCTGGAAGAGCAAGTTA	NA	NA	NA	NA	NA	NA	NA	NA	105590076	105586724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_105587029_105587659_105587762_105587865_105587972_105588296_105588380_105590041
ONT_simulated_read_15935590	chr4	-	2993	1	ISM	ENSMUSG00000061894.16	ENSMUST00000097877.9	5364	8	23290	269	17772	-269	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAAAGACCTGGGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	128480601	128477608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_128477600_128480600
ONT_simulated_read_15937780	chr19	+	278	2	ISM	ENSMUSG00000024924.15	ENSMUST00000047645.13	3260	17	101	19493	101	-19493	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATGGCCGCTGCATTACC	NA	NA	NA	NA	NA	NA	NA	NA	27194857	27207634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_27195097_27207595
ONT_simulated_read_15938575	chr9	+	878	8	NIC	ENSMUSG00000001833.18	novel	2533	14	NA	NA	-41	-3623	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGTTCTTTTCAGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	25163871	25209204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107
ONT_simulated_read_15940582	chr9	-	457	1	ISM	ENSMUSG00000032298.14	ENSMUST00000190245.7	1693	10	4802	69	3709	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAATGTAAGCCATCTTC	NA	NA	NA	NA	NA	NA	NA	NA	57050609	57050152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_57050200_57050600
ONT_simulated_read_15941098	chr7	-	507	1	ISM	ENSMUSG00000003123.16	ENSMUST00000003207.11	3613	10	16212	134	9057	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGGCCTTTTAAAAATAGG	NA	NA	NA	NA	NA	NA	NA	NA	25079592	25079085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_25079100_25079600
ONT_simulated_read_15942549	chr3	+	861	6	FSM	ENSMUSG00000027942.18	ENST00000640799.1	823	6	-38	0	33	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACGTGCAGCCGTGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	89960210	89969148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89968944
ONT_simulated_read_15944041	chr1	-	1099	1	ISM	ENSMUSG00000026618.12	ENSMUST00000027921.11	5471	23	42222	1350	42222	-1350	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAATCATATATTACGAAG	NA	NA	NA	NA	NA	NA	NA	NA	185019371	185018272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_185018300_185019400
ONT_simulated_read_15947001	chr4	-	472	1	NIC	ENSMUSG00000028906.18	novel	4948	17	NA	NA	49632	-124	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCACAGTTGCAAGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	131685110	131684638	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_131684600_131685100
ONT_simulated_read_15956978	chr6	+	247	1	ISM	ENSMUSG00000000693.11	ENSMUST00000000707.9	4098	14	17576	567	16270	-567	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGTTAGAACTTAAGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	83028729	83028976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_83028700_83029000
ONT_simulated_read_15959362	chr7	-	1707	5	ISM	ENSMUSG00000030930.15	ENSMUST00000077472.10	5041	8	45714	12174	45714	-12174	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGAGGCTCTGCAGCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	131872729	131849682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_131849750_131864411_131864569_131868385_131868533_131870647_131870988_131871733
ONT_simulated_read_15959879	chr11	-	2448	15	ISM	ENSMUSG00000020538.16	ENSMUST00000020846.8	4299	19	14546	943	14546	-943	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGAGGCGGCACGCACC	NA	NA	NA	NA	NA	NA	NA	NA	60096884	60090857	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681
ONT_simulated_read_15964041	chr6	-	745	1	ISM	ENSMUSG00000092134.2	ENSMUST00000171098.2	1394	4	9751	58	9751	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACGTTGGGACAAATGTAC	NA	NA	NA	NA	NA	NA	NA	NA	134210923	134210178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_134210200_134210900
ONT_simulated_read_15964391	chr8	+	4103	1	FSM	ENSMUSG00002076582.1	ENSMUST00020183743.1	87	1	0	-4016	0	4016	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGAGTGGGTGGGGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	72865077	72869180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_72865100_72869200
ONT_simulated_read_15967271	chr1	-	190	1	NIC	ENSMUSG00000067071.9	novel	1335	4	NA	NA	201	-493	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCTGGGTGAGCC	NA	NA	NA	NA	NA	NA	NA	NA	91340502	91340312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_91340300_91340500
ONT_simulated_read_15967718	chr2	-	705	1	FSM	ENSMUSG00000074890.5	ENSMUST00000110674.4	3056	1	164	2187	-111	-2187	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTCTATCGCCGCCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	120970970	120970265	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_120970300_120971000
ONT_simulated_read_15969781	chr15	+	785	6	ISM	ENSMUSG00000022553.17	ENSMUST00000160853.8	1651	8	115	1002	64	-1001	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGAAGATGGAAGCCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	76235608	76237571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76235860_76236666_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540
ONT_simulated_read_15970085	chr19	-	1631	5	ISM	ENSMUSG00000040451.19	ENSMUST00000151289.9	3262	6	50676	1419	50676	-1417	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCATGCACTGTAGACATT	NA	NA	NA	NA	NA	NA	NA	NA	32137737	32101546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923
ONT_simulated_read_1597095	chr5	-	511	5	NNC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	2217	-1538	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTGACAGGGGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	124714977	124709813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_124709950_124711140_124711217_124711748_124711814_124712656_124712774_124714860
ONT_simulated_read_15971245	chr9	-	387	5	ISM	ENSMUSG00000032026.8	ENSMUST00000034524.5	1077	7	5441	374	5409	-81	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAGACAGACGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	48386470	48380185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_48380247_48383119_48383174_48384331_48384441_48385701_48385814_48386419
ONT_simulated_read_15975223	chr10	-	259	2	ISM	ENSMUSG00000019982.16	ENST00000525369.5	2871	13	17109	1152	17109	-814	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCTGAGAGAAGAGCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	21015250	21001988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_21002189_21015191
ONT_simulated_read_15975859	chr1	-	808	1	NIC	ENSMUSG00000026019.16	novel	10012	13	NA	NA	19666	-567	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGCTTCATAACTAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	60117401	60116593	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_60116600_60117400
ONT_simulated_read_1597943	chr11	+	1467	12	FSM	ENSMUSG00000007850.17	ENST00000510411.5	2062	12	-6	601	-6	-601	multi-exon	FALSE	canonical	NA	NA	NA	NA	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAATTTTTTAAAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	50269127	50276750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274597_50275470_50275564_50275967_50276018_50276603
ONT_simulated_read_15987916	chr14	-	943	1	ISM	ENSMUSG00000057156.11	ENSMUST00000081162.6	5609	2	2250	4562	2250	-667	mono-exon	FALSE	NA	NA	NA	NA	NA	863	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCTTTCCCCAGATATG	NA	NA	NA	NA	NA	NA	NA	NA	55095697	55094754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55094800_55095700
ONT_simulated_read_15990609	chr11	+	2931	1	FSM	ENSMUSG00000049323.9	ENSMUST00000102667.5	3544	1	1	612	0	-612	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGAAAGCCTGCTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	60668350	60671281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_60668400_60671300
ONT_simulated_read_15990741	chr5	-	838	1	FSM	ENSMUSG00000105033.2	ENSMUST00000198390.2	2094	1	0	1256	0	-1256	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGGAAGATGGCAGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	107308437	107307599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_107307600_107308400
ONT_simulated_read_15995562	chr13	-	1378	12	NIC	ENSMUSG00000021546.19	novel	2626	15	NA	NA	431	-365	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCTTCATAGGTGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	58547805	58540128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706
ONT_simulated_read_1599576	chr17	-	1821	12	ISM	ENSMUSG00000059208.16	ENSMUST00000148178.8	3934	16	17782	291	16310	-285	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGTTCGAATTGATAGAA	NA	NA	NA	NA	NA	NA	NA	NA	33888052	33865497	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958
ONT_simulated_read_15996250	chrX	-	781	1	NIC	ENSMUSG00000036022.16	novel	4334	9	NA	NA	22729	-1765	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAATGTAGAATGAACTAG	NA	NA	NA	NA	NA	NA	NA	NA	52335168	52334387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_52334400_52335200
ONT_simulated_read_15996274	chr12	-	1992	1	ISM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	23229	1626	23229	-1626	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCCCCTTCATGTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	11292538	11290546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_11290500_11292500
ONT_simulated_read_16001587	chr1	+	815	6	FSM	ENSMUSG00000026254.18	ENST00000409322.5	792	6	9	-32	9	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTCATGCTCTTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	87141700	87155786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_87141742_87147302_87147418_87152074_87152180_87153571_87153725_87153818_87153956_87155522
ONT_simulated_read_16004208	chr19	-	1400	7	ISM	ENSMUSG00000041731.14	ENSMUST00000047666.5	3239	11	45277	1053	45277	-1053	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTCTAGGAAACACCCC	NA	NA	NA	NA	NA	NA	NA	NA	24793942	24661432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_24661939_24686591_24686727_24705032_24705217_24710905_24711042_24727728_24727845_24793021_24793177_24793774
ONT_simulated_read_16006902	chr13	-	460	4	ISM	ENSMUSG00000021427.11	ENST00000479365.5	1114	8	6368	3889	6307	-3889	internal_fragment	FALSE	canonical	NA	NA	NA	NA	1411	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGATGTTGACATGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	38171752	38167418	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_38167463_38169239_38169319_38169950_38170028_38171492
ONT_simulated_read_16007583	chrX	+	339	1	FSM	ENSMUSG00000051851.6	ENSMUST00000063384.4	401	1	0	62	0	-62	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGGACTTCTAGGCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	52609998	52610337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_52610000_52610300
ONT_simulated_read_16009041	chr2	+	290	2	ISM	ENSMUSG00000034850.16	ENSMUST00000035871.15	4811	4	0	12503	0	-8917	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGCGGAGAAGCCCGGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	127089827	127090524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_127090005_127090411
ONT_simulated_read_16011531	chr18	-	197	1	ISM	ENSMUSG00000024529.15	ENSMUST00000025409.9	4741	7	10441	2970	10441	-2968	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTTTAAATCCTTACT	NA	NA	NA	NA	NA	NA	NA	NA	52652305	52652108	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_52652100_52652300
ONT_simulated_read_16012566	chr8	-	856	5	ISM	ENSMUSG00000031715.15	ENSMUST00000043359.9	6113	24	33941	2316	33941	-2316	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTTCTAATAGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	81432185	81427451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_81427758_81428756_81428865_81431233_81431447_81431847_81431967_81432075
ONT_simulated_read_16015183	chr8	-	1797	11	ISM	ENSMUSG00000037103.9	ENSMUST00000210279.2	2199	13	1881	158	1880	-158	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCCAGTCCTGCTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	84829511	84823858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_84824138_84824365_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374
ONT_simulated_read_16015529	chr11	-	2340	1	NIC	ENSMUSG00000037001.11	novel	3890	5	NA	NA	12677	-1056	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTACACAAGGGAAACTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	58782374	58780034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_58780000_58782400
ONT_simulated_read_16018461	chr7	-	556	1	ISM	ENSMUSG00000025790.15	ENSMUST00000098371.9	2709	11	278545	114	278526	-114	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTCTGTATTTTTGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	73925836	73925280	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_73925300_73925800
ONT_simulated_read_1601891	chr14	-	593	5	ISM	ENSMUSG00000004558.16	ENST00000554104.5	1816	14	3499	620	3499	-126	internal_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTTTGGTGTTGAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	52144754	52143358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702
ONT_simulated_read_16019180	chr19	-	769	1	ISM	ENSMUSG00000024878.10	ENSMUST00000025815.10	1929	15	40917	0	40803	0	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAGTGTGATGGTACTTT	NA	NA	NA	NA	NA	NA	NA	NA	24898048	24897279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_24897300_24898000
ONT_simulated_read_1601994	chr11	-	1439	6	ISM	ENSMUSG00000042709.16	ENSMUST00000108721.9	1813	8	7674	0	7674	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGGTCTAAGCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	60300203	60291451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085
ONT_simulated_read_1602010	chr19	-	1516	5	ISM	ENSMUSG00000024816.13	ENST00000355991.9	1294	10	9819	-657	9819	657	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGGGCGTGGCAACTC	NA	NA	NA	NA	NA	NA	NA	NA	5915319	5901950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5902771_5906612_5906818_5912278_5912423_5913251_5913376_5915096
ONT_simulated_read_16021994	chr2	-	774	6	ISM	ENSMUSG00000009566.13	ENSMUST00000028148.11	2273	15	7300	618	5837	-527	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATCTTTCAGCCCCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	32576897	32573238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_32573481_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576656_32576749
ONT_simulated_read_16022311	chr7	-	194	1	ISM	ENSMUSG00000030528.13	ENSMUST00000081314.11	4598	22	79696	237	59269	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATCTGACCATCTGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	80105171	80104977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80105000_80105200
ONT_simulated_read_16023321	chr13	+	845	1	FSM	ENSMUSG00000113637.2	ENSMUST00000223520.2	1712	1	0	867	0	-867	mono-exon	FALSE	NA	NA	NA	NA	NA	178	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCTTCGAATTACCAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	62960889	62961734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_62960900_62961700
ONT_simulated_read_16025896	chr9	+	1284	10	ISM	ENSMUSG00000032058.15	ENSMUST00000114437.9	3430	15	26	11271	0	-9774	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACTGGCTGAAGATGCCA	NA	NA	NA	NA	NA	NA	NA	NA	50768262	50781460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362
ONT_simulated_read_16029247	chr7	-	686	1	ISM	ENSMUSG00000062300.15	ENSMUST00000108450.5	1955	6	24687	0	24687	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGGGTGTTTTGTAATC	NA	NA	NA	NA	NA	NA	NA	NA	19458771	19458085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_19458100_19458800
ONT_simulated_read_1602956	chr15	-	300	2	ISM	ENSMUSG00000075602.11	ENSMUST00000023248.13	819	3	1097	388	1097	-315	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTCCTCCCAATGAC	NA	NA	NA	NA	NA	NA	NA	NA	74868386	74867114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_74867329_74868300
ONT_simulated_read_16030378	chr14	-	561	1	ISM	ENSMUSG00000033186.10	ENSMUST00000042662.10	2240	3	9627	1389	9600	-147	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGGCAGTTAAAGGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	99273929	99273368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_99273400_99273900
ONT_simulated_read_16031640	chr2	+	1874	16	ISM	ENSMUSG00000036202.17	ENST00000430328.6	7466	34	16439	12980	16439	-12980	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAAAGTCTACCGACTTT	NA	NA	NA	NA	NA	NA	NA	NA	51979584	51998503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451
ONT_simulated_read_16034212	chr13	-	1614	12	NNC	ENSMUSG00000021156.18	novel	4117	15	NA	NA	10621	84	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAACACTTTTCGTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	9760343	9736813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745218_9745774_9745863_9747679_9747773_9748663_9748742_9760181
ONT_simulated_read_16034411	chr2	+	961	7	ISM	ENSMUSG00000027411.18	ENST00000380469.7	2161	20	17282	-157	17243	157	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTATTGAGGTTGGGAATA	NA	NA	NA	NA	NA	NA	NA	NA	130283527	130285739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
ONT_simulated_read_16034699	chr3	-	1144	3	ISM	ENSMUSG00000027746.14	ENSMUST00000146598.8	4890	6	3557	3549	3493	1886	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTACAAGGATTTACATAAGA	NA	NA	NA	NA	NA	NA	NA	NA	53767694	53764345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_53765417_53766662_53766696_53767654
ONT_simulated_read_1603606	chr8	-	826	3	ISM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	56555	370	56555	-370	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACCCTGTCTCTAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	14083746	14077930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_14078154_14080592_14080785_14083335
ONT_simulated_read_16037209	chr5	-	869	5	ISM	ENSMUSG00000042726.15	ENSMUST00000120784.8	2425	12	5889	4078	5889	-4078	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGACCATCAGGTGTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	121517745	121513870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608
ONT_simulated_read_16040365	chr17	-	1928	1	ISM	ENSMUSG00000023965.14	ENSMUST00000024761.13	4925	9	439631	1007	432367	-677	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAACATGTACCAAAACCA	NA	NA	NA	NA	NA	NA	NA	NA	63367381	63365453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_63365500_63367400
ONT_simulated_read_16041895	chr7	-	1054	6	ISM	ENSMUSG00000014402.16	ENSMUST00000014546.15	1949	10	12792	431	12792	-431	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	586	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATAATTTTTCTCTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	46556925	46539127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798
ONT_simulated_read_16044940	chr14	-	654	1	NIC	ENSMUSG00000021905.15	novel	1057	4	NA	NA	2363	165	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGCCTTTCCTAGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	31805203	31804549	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_31804500_31805200
ONT_simulated_read_16047477	chr4	-	367	2	ISM	ENSMUSG00000066196.12	ENST00000484764.5	1194	6	1330	10	1330	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTAATTCATTGATTCT	NA	NA	NA	NA	NA	NA	NA	NA	43651793	43651334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_43651655_43651746
ONT_simulated_read_16047836	chr1	-	2105	8	ISM	ENSMUSG00000026425.16	ENST00000573034.8	6670	21	205946	2333	205354	-2333	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTGTGGTGGCAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	131247388	131216563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_131217479_131220258_131220584_131224057_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262
ONT_simulated_read_16047984	chr5	-	803	6	ISM	ENSMUSG00000062234.15	ENST00000618573.4	1231	8	48688	0	48688	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCCTGTGATGGCTATG	NA	NA	NA	NA	NA	NA	NA	NA	108728823	108717723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772
ONT_simulated_read_16050671	chr18	-	820	9	ISM	ENSMUSG00000006740.15	ENSMUST00000025083.14	6032	26	26855	8182	26855	-8182	internal_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCCTAAGTTAGAGAAACG	NA	NA	NA	NA	NA	NA	NA	NA	6214668	6209183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_6209217_6210699_6210805_6211023_6211096_6211191_6211253_6212516_6212619_6213186_6213297_6213392_6213455_6213969_6214088_6214511
ONT_simulated_read_16051575	chr13	-	894	1	ISM	ENSMUSG00000074865.12	ENSMUST00000222746.2	2206	3	39948	993	1770	-288	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACTGGAGAGAAACCCTA	NA	NA	NA	NA	NA	NA	NA	NA	62666495	62665601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_62665600_62666500
ONT_simulated_read_16052858	chr17	-	160	2	ISM	ENSMUSG00000023966.9	ENSMUST00000024762.3	966	5	9108	204	9108	-204	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCAACGCACTGGTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	46446034	46440400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_46440425_46445898
ONT_simulated_read_16053248	chr9	+	167	2	ISM	ENSMUSG00000034275.19	ENSMUST00000115247.8	2857	15	27712	1571	27695	-1571	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGGCTCCCACCTG	NA	NA	NA	NA	NA	NA	NA	NA	27238235	27239860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_27238318_27239775
ONT_simulated_read_16056642	chr7	+	1447	9	NIC	ENSMUSG00000030409.17	novel	2761	15	NA	NA	3534	-85	intron_retention	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGCTGGTAGCCACCGC	NA	NA	NA	NA	NA	NA	NA	NA	18821417	18827256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_+_18821626_18821925_18822190_18822835_18822922_18824853_18824966_18825605_18825770_18825863_18825962_18826132_18826180_18826471_18826558_18826874
ONT_simulated_read_1605698	chr7	-	617	5	ISM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	16036	6902	16036	-6902	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAGGCATCCAGGATGTG	NA	NA	NA	NA	NA	NA	NA	NA	126597757	126592933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126592974_126594907_126595145_126595409_126595505_126597397_126597530_126597644
ONT_simulated_read_16062412	chr17	-	1739	1	ISM	ENSMUSG00000002017.11	ENSMUST00000112507.4	2817	8	13122	0	13038	0	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGGAGTTTTCTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	75845819	75844080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_75844100_75845800
ONT_simulated_read_16062994	chr10	-	2117	17	NNC	ENSMUSG00000020115.4	novel	3024	21	NA	NA	6697	60	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTGCCTAAAGAAAGTATT	NA	NA	NA	NA	NA	NA	NA	NA	121407930	121382753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_121383094_121387155_121387228_121387391_121387499_121388104_121388198_121388312_121388415_121388933_121388974_121389649_121389727_121389807_121389930_121391891_121391971_121393106_121393209_121395751_121395844_121396145_121396205_121397481_121397679_121399830_121400011_121403933_121404045_121406535_121406697_121407747
ONT_simulated_read_16064263	chr11	-	2027	4	ISM	ENSMUSG00000020876.15	ENSMUST00000021246.9	2551	9	4658	142	4658	-142	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCCAGAGAGCTAGGATG	NA	NA	NA	NA	NA	NA	NA	NA	96663699	96658522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607
ONT_simulated_read_1606589	chr2	-	1587	4	ISM	ENSMUSG00000032869.16	ENSMUST00000042452.11	3809	7	11663	1657	11663	796	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGACCAGGGCCAGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	151571567	151559388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410
ONT_simulated_read_16068794	chr2	+	454	6	ISM	ENSMUSG00000039356.16	ENST00000372352.7	872	9	15	3874	15	-3874	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTCTCTGCACACGAGG	NA	NA	NA	NA	NA	NA	NA	NA	31560754	31566710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31565917_31566679
ONT_simulated_read_16069584	chr18	-	377	1	ISM	ENSMUSG00000042680.9	ENSMUST00000049260.7	4923	6	170135	2426	170120	-1140	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGCAGCTGGCATGACCA	NA	NA	NA	NA	NA	NA	NA	NA	21263060	21262683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_21262700_21263100
ONT_simulated_read_16070077	chr18	-	187	1	ISM	ENSMUSG00000041840.9	ENSMUST00000236234.2	1226	10	16133	0	9287	0	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTTATCTGTTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	77845453	77845266	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_77845300_77845500
ONT_simulated_read_16072688	chr5	-	549	1	ISM	ENSMUSG00000009013.6	ENSMUST00000009157.4	2030	3	2187	1154	2100	241	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCCACAGGTCTGAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	115436871	115436322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_115436300_115436900
ONT_simulated_read_16073930	chr4	+	112	2	ISM	ENSMUSG00000028899.12	ENSMUST00000030731.11	3787	6	38	12936	15	-10259	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATCTTGACAAGCTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	132001723	132010141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_132001799_132010104
ONT_simulated_read_1607767	chr8	-	341	1	ISM	ENSMUSG00000031451.7	ENSMUST00000033828.7	2548	15	28621	155	28621	-155	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGGGAGCTGGCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	13515869	13515528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_13515500_13515900
ONT_simulated_read_16079241	chr7	+	156	1	Antisense	novelGene_ENSMUSG00000030742.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTTCAAAGAGAGAGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	125967229	125967385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr7_+_125967200_125967400
ONT_simulated_read_16080651	chr15	+	636	5	ISM	ENSMUSG00000037119.5	ENSMUST00000037270.5	5560	24	17029	14773	17029	-14773	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGAGGCTTTCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	58304345	58314816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_58304477_58304742_58304830_58306512_58306646_58313426_58313576_58314680
ONT_simulated_read_16082697	chr6	-	834	12	FSM	ENSMUSG00000033720.13	ENST00000410065.5	846	12	12	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGACCAGCCGGCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	85310404	85192650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_85192729_85206175_85206294_85233324_85233416_85244853_85244920_85246079_85246137_85246891_85246946_85264031_85264058_85266158_85266214_85266743_85266771_85276521_85276600_85296503_85296573_85310289
ONT_simulated_read_16087422	chr6	-	258	3	ISM	ENSMUSG00000004347.18	ENSMUST00000164752.8	3449	18	17658	74417	17159	-73963	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGATGAGAAGCCCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	56322137	56157119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_56157237_56158668_56158783_56322110
ONT_simulated_read_16088531	chr13	-	425	5	ISM	ENSMUSG00000003062.14	ENST00000434197.5	1146	7	3444	1290	3444	-1155	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTTCTGCTCTGTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	19557383	19543166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_19543222_19551913_19552010_19554419_19554538_19556757_19556836_19557305
ONT_simulated_read_16090343	chr7	-	358	1	ISM	ENSMUSG00000030541.17	ENSMUST00000107384.10	1745	11	20189	0	20101	0	mono-exon	FALSE	NA	NA	NA	NA	NA	443	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGATGTGTTTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	79744951	79744593	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_79744600_79745000
ONT_simulated_read_16091510	chr12	+	566	6	ISM	ENSMUSG00000064215.14	ENSMUST00000085065.12	977	7	33	769	33	-737	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTCTAGCAGCTAAGATGA	NA	NA	NA	NA	NA	NA	NA	NA	103400550	103405729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_103400610_103401680_103401833_103402821_103402942_103403648_103403784_103403934_103403965_103405659
ONT_simulated_read_160918	chr19	-	1450	5	ISM	ENSMUSG00000034321.15	ENSMUST00000112123.4	2296	6	258	675	0	599	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGTTGTGCCTGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	41921604	41911405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_41912528_41913149_41913235_41913627_41913679_41919794_41919870_41921487
ONT_simulated_read_16092056	chr13	-	762	5	ISM	ENSMUSG00000021557.16	ENST00000337006.8	4269	25	83497	443	70622	-443	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACACCTGATTTGAAATT	NA	NA	NA	NA	NA	NA	NA	NA	59621631	59597966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_59598129_59608282_59608444_59609810_59609988_59613798_59613931_59621501
ONT_simulated_read_16093740	chr10	+	334	4	ISM	ENSMUSG00000020153.15	ENSMUST00000105364.8	983	9	0	3687	0	-3686	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTAGCCACTGAGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	80084954	80088940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_80085039_80085145_80085326_80088230_80088268_80088907
ONT_simulated_read_16095941	chr11	-	469	1	ISM	ENSMUSG00000018405.8	ENSMUST00000018549.8	2477	5	5040	946	5040	-946	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGGGATGATGGGGATA	NA	NA	NA	NA	NA	NA	NA	NA	84705301	84704832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_84704800_84705300
ONT_simulated_read_16097353	chr11	-	795	6	ISM	ENSMUSG00000020451.18	ENSMUST00000101640.10	3711	16	10789	9152	-2288	-7646	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCAGCCGGGACATAAGC	NA	NA	NA	NA	NA	NA	NA	NA	3310587	3303407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450
ONT_simulated_read_16098118	chr16	-	1648	1	ISM	ENSMUSG00000050312.13	ENSMUST00000063089.12	3813	6	51366	1320	51366	-1320	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTTTATTTCACTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	62555774	62554126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_62554100_62555800
ONT_simulated_read_16098197	chr2	-	561	4	ISM	ENSMUSG00000063972.14	ENSMUST00000168098.8	5877	9	45373	4512	45373	-281	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCCTCCTCTTTAAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	38629154	38617897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_38617928_38619494_38619648_38621057_38621180_38628898
ONT_simulated_read_16098463	chr10	-	693	1	FSM	ENSMUSG00000074780.3	ENSMUST00000218771.2	399	1	0	-294	0	294	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGTCCCCCCCCCCCAAAA	NA	NA	NA	NA	NA	NA	NA	NA	95509251	95508558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_95508600_95509300
ONT_simulated_read_16103202	chr8	-	483	5	ISM	ENSMUSG00000031781.15	ENST00000569370.5	1167	6	52	1077	52	-1077	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACGTACTGCACCTCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	95558490	95550280	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_95550360_95553262_95553337_95554904_95555068_95555781_95555859_95558400
ONT_simulated_read_16103964	chr11	-	164	1	ISM	ENSMUSG00000018171.10	ENSMUST00000018315.10	2787	12	98401	1407	98401	-1407	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCTGCCTTACACTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	86476261	86476097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_86476100_86476300
ONT_simulated_read_16105232	chr6	+	1164	9	ISM	ENSMUSG00000030079.16	ENSMUST00000032165.16	1675	11	0	6028	0	-6028	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCCCGTTGGATCTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	88442390	88468526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_88442651_88444547_88444635_88450058_88450192_88456108_88456261_88459099_88459190_88459944_88460095_88461389_88461454_88462694_88462894_88468497
ONT_simulated_read_1610689	chr14	-	614	4	NIC	ENSMUSG00000004558.16	novel	1816	14	NA	NA	3499	-69	combination_of_known_splicesites	TRUE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAACAATGAGCTGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	52144754	52143301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_52143764_52143969_52144022_52144405_52144454_52144702
ONT_simulated_read_16113245	chrX	-	123	1	ISM	ENSMUSG00000034403.17	ENSMUST00000036354.7	2563	2	2103	2353	2083	-2321	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGAACCCTTACACCTGC	NA	NA	NA	NA	NA	NA	NA	NA	98512195	98512072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_98512100_98512200
ONT_simulated_read_1611534	chr11	-	907	8	ISM	ENSMUSG00000038967.14	ENSMUST00000038431.8	2246	11	9334	909	9334	-909	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACCTGTAGGATGCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	94922846	94917992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_94918149_94918690_94918805_94919304_94919413_94919523_94919623_94919747_94919825_94920479_94920558_94920742_94920833_94922661
ONT_simulated_read_16115678	chr10	+	192	1	ISM	ENSMUSG00000019857.8	ENSMUST00000020004.8	2201	4	0	12082	0	-10769	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGCCGCCAGCCCCGGC	NA	NA	NA	NA	NA	NA	NA	NA	53473047	53473239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_53473000_53473200
ONT_simulated_read_16117668	chr5	-	737	7	ISM	ENSMUSG00000045078.13	ENSMUST00000200607.5	3704	17	31910	36152	17375	-36152	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGACATCAAGTACCGGAC	NA	NA	NA	NA	NA	NA	NA	NA	143066825	143013726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717
ONT_simulated_read_1612189	chr17	+	451	3	ISM	ENSMUSG00000002308.17	ENSMUST00000002379.15	2209	5	62	2094	62	-1071	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCCACCCAGACTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	34062126	34066654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34062266_34064989_34065116_34066468
ONT_simulated_read_16122951	chr3	-	983	1	ISM	ENSMUSG00000004591.17	ENSMUST00000043812.15	6207	22	88031	2089	87685	820	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTCTACACGTATTTCA	NA	NA	NA	NA	NA	NA	NA	NA	142499734	142498751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_142498800_142499700
ONT_simulated_read_16123235	chr3	-	728	9	ISM	ENSMUSG00000033439.13	ENSMUST00000041524.11	3402	12	22076	1774	2205	-1541	internal_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACCTTTAGCCAAACGC	NA	NA	NA	NA	NA	NA	NA	NA	116386160	116376515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_116376573_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112
ONT_simulated_read_161269	chr11	+	537	6	ISM	ENSMUSG00000018411.18	ENST00000535772.6	1314	10	50907	17872	0	-17818	internal_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCGGGAGCCCAAGAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	104173206	104201195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_104173307_104177948_104178036_104185684_104185751_104193186_104193237_104197451_104197585_104201094
ONT_simulated_read_16128700	chr9	+	132	1	ISM	ENSMUSG00000084786.10	ENSMUST00000129414.9	2114	5	753	2762	0	-2567	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCCTGTCTGCTAAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	20555366	20555498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_20555400_20555500
ONT_simulated_read_16130321	chrX	-	275	4	ISM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	11077	1687	11077	-1687	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTGATCCTGAGCCCCCG	NA	NA	NA	NA	NA	NA	NA	NA	158910332	158906891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286
ONT_simulated_read_16130347	chr1	-	754	6	ISM	ENSMUSG00000026313.17	ENSMUST00000008995.15	3937	26	193014	446	193014	-446	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCCTGGACCACAGGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	91883101	91860924	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_91861109_91861377_91861520_91862323_91862409_91873621_91873756_91875139_91875259_91883011
ONT_simulated_read_16132328	chr2	+	775	1	ISM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	2945	506	2757	-506	mono-exon	FALSE	NA	NA	NA	NA	NA	476	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAGGATGAAATGAAATGA	NA	NA	NA	NA	NA	NA	NA	NA	121282620	121283395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_121282600_121283400
ONT_simulated_read_16132977	chr1	+	767	1	ISM	ENSMUSG00000026123.12	ENSMUST00000027297.11	3279	8	27664	1158	27664	-1158	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCCGCCGTGCTGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	34916736	34917503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_34916700_34917500
ONT_simulated_read_16134609	chr5	+	664	1	ISM	ENSMUSG00000029108.15	ENSMUST00000191837.6	8785	3	0	414600	0	-10835	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTGCTGTCAGGCGGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	57875308	57875972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_57875300_57876000
ONT_simulated_read_16137171	chr1	+	241	4	ISM	ENSMUSG00000026043.19	ENSMUST00000087883.13	5564	51	28420	8732	28420	-8732	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGCTGGACAGCCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	45379117	45380134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_45379142_45379414_45379469_45379789_45379844_45380025
ONT_simulated_read_16138429	chr12	-	1267	1	ISM	ENSMUSG00000020964.15	ENSMUST00000021347.12	6300	21	39105	2743	39077	-2165	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCCTGGGTGCACCGTTG	NA	NA	NA	NA	NA	NA	NA	NA	91776826	91775559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_91775600_91776800
ONT_simulated_read_1613930	chr18	-	1171	3	ISM	ENSMUSG00000051469.15	ENSMUST00000153337.2	1513	4	2157	234	2157	-234	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAAGGTTTAAGAAATTAG	NA	NA	NA	NA	NA	NA	NA	NA	24151220	24147215	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_24147743_24150340_24150489_24150724
ONT_simulated_read_16140482	chr8	-	457	1	ISM	ENSMUSG00000001995.10	ENSMUST00000108775.2	6365	21	73440	751	73337	-738	mono-exon	FALSE	NA	NA	NA	NA	NA	407	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTATGGCAGGGCTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	126146009	126145552	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_126145600_126146000
ONT_simulated_read_16143783	chr14	-	434	1	NIC	ENSMUSG00000021810.4	novel	3132	14	NA	NA	25824	209	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCTGTGCAGGTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	20371020	20370586	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_20370600_20371000
ONT_simulated_read_16145839	chr17	+	420	3	ISM	ENSMUSG00000073471.4	ENSMUST00000097423.3	2189	8	408	9589	408	-9589	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACGAACGCCTGAGCCCG	NA	NA	NA	NA	NA	NA	NA	NA	8164892	8189067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_8165136_8171380_8171469_8188978
ONT_simulated_read_16146401	chr9	+	1133	5	ISM	ENSMUSG00000032531.16	ENSMUST00000035121.14	4328	10	2619	5092	2619	-5087	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACAGGAACAGGAGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	102597485	102605525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_102598076_102600767_102601063_102601885_102602031_102602301_102602395_102605515
ONT_simulated_read_16147260	chr4	+	430	6	ISM	ENSMUSG00000028863.14	ENST00000448519.2	666	8	4721	7	4721	-7	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATCAGCCAGACAACTTAG	NA	NA	NA	NA	NA	NA	NA	NA	124983690	125002153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_124983756_124983894_124983941_124996631_124996825_125001309_125001340_125001444_125001503_125002115
ONT_simulated_read_1614868	chr4	-	3365	10	ISM	ENSMUSG00000028803.19	ENSMUST00000102549.10	5153	12	12088	1239	11971	-1239	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACGCAAAGAAGTAAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	135209846	135177441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_135179884_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135206846_135207019_135209782
ONT_simulated_read_161498	chr8	+	2147	6	FSM	ENSMUSG00000037492.17	ENST00000315769.11	2151	6	4	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1569	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGTTTTTGTTTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	24159673	24551314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_24159818_24238415_24238522_24287357_24287448_24392030_24392188_24505131_24505229_24549761
ONT_simulated_read_16153032	chr6	-	699	6	ISM	ENSMUSG00000030051.11	ENST00000303795.9	1792	10	-8	24122	-8	-24106	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGATAGAACCCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	87648976	87630836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
ONT_simulated_read_1615590	chr16	-	1134	2	ISM	ENSMUSG00000097397.3	ENSMUST00000181498.3	1694	3	495	271	495	-271	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGTGACAAGTGAAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	4757002	4753183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4754047_4756731
ONT_simulated_read_16167276	chr3	-	1140	7	ISM	ENSMUSG00000034109.16	ENSMUST00000167078.8	2902	16	53626	9019	53618	-9019	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGGTAAGATAATGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	75810618	75793984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_75794148_75797828_75797939_75799195_75799279_75800089_75800344_75802141_75802445_75805277_75805440_75810553
ONT_simulated_read_1616735	chr4	+	768	7	ISM	ENSMUSG00000000085.17	ENSMUST00000064991.13	2548	16	0	46431	0	-45528	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCGCATTTGACTACTGG	NA	NA	NA	NA	NA	NA	NA	NA	120310439	120340928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_120310504_120310948_120310973_120319209_120319353_120320271_120320343_120325431_120325667_120335198_120335288_120340786
ONT_simulated_read_16171235	chr4	+	264	1	FSM	ENSMUSG00000083496.2	ENSMUST00000121853.2	749	1	0	485	0	-485	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGGAGAGAGGAAGCGCAA	NA	NA	NA	NA	NA	NA	NA	NA	79245944	79246208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_79245900_79246200
ONT_simulated_read_16171894	chr5	+	1279	9	ISM	ENSMUSG00000029466.12	ENSMUST00000119792.2	3599	10	0	3299	0	-3299	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGCCAACAATGTTTACAA	NA	NA	NA	NA	NA	NA	NA	NA	122560543	122578198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148
ONT_simulated_read_16176564	chr15	-	731	1	ISM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	16896	129	12442	-129	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTTTTTTAGATAT	NA	NA	NA	NA	NA	NA	NA	NA	98543874	98543143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_98543100_98543900
ONT_simulated_read_16180439	chr11	-	579	1	ISM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	9988	0	9988	0	mono-exon	FALSE	NA	NA	NA	NA	NA	522	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	NA	NA	NA	NA	NA	NA	NA	117706930	117706351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_117706400_117706900
ONT_simulated_read_16180715	chr9	-	1933	9	ISM	ENSMUSG00000034533.11	ENST00000643924.1	5869	27	46146	13858	46114	-13858	internal_fragment	TRUE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAGTCAACTTCGACAAC	NA	NA	NA	NA	NA	NA	NA	NA	119477277	119451882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_119452115_119453086_119453210_119456136_119456311_119459150_119459306_119460520_119460645_119462806_119462945_119464508_119464962_119467501_119467862_119477103
ONT_simulated_read_16184002	chr15	+	661	9	ISM	ENSMUSG00000056851.15	ENSMUST00000078404.15	3222	14	5900	9385	5303	-7849	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCCGTCAGATGTCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	102387071	102399111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068
ONT_simulated_read_16184660	chr9	-	1117	1	ISM	ENSMUSG00000042396.11	ENSMUST00000213276.2	2629	4	5305	172	5305	-172	mono-exon	FALSE	NA	NA	NA	NA	NA	595	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAGGATTGTAATTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	48401289	48400172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_48400200_48401300
ONT_simulated_read_16184802	chr14	-	936	7	ISM	ENSMUSG00000063410.9	ENST00000455035.1	1240	10	41298	2262	41298	-2262	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCCCAAGAATCTGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	121575047	121531659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_121531726_121532066_121532213_121534546_121534733_121539597_121539756_121540158_121540268_121545426_121545484_121574833
ONT_simulated_read_16186677	chr6	+	1115	11	ISM	ENSMUSG00000051855.16	ENSMUST00000163949.9	2561	12	5	2167	2	-2167	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTATCCAGAGTTTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	30738053	30746294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_30738335_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260
ONT_simulated_read_16190483	chr14	-	898	1	ISM	ENSMUSG00000022016.18	ENSMUST00000123853.9	9364	12	40865	2800	40865	-2800	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCCACTAGTTTATTCT	NA	NA	NA	NA	NA	NA	NA	NA	78733383	78732485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_78732500_78733400
ONT_simulated_read_16191987	chr8	-	2334	1	NIC	ENSMUSG00000031683.17	novel	3792	5	NA	NA	4968	538	mono-exon	FALSE	NA	NA	NA	NA	NA	519	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTGACTTTTGGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	79534875	79532541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_79532500_79534900
ONT_simulated_read_16195612	chr3	-	1471	11	ISM	ENSMUSG00000027889.18	ENST00000528454.5	2645	18	2393	1190	2393	-1190	internal_fragment	FALSE	canonical	NA	NA	NA	NA	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCGCACTGTGGGGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	107987490	107983379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378
ONT_simulated_read_16195761	chr11	+	3135	1	FSM	ENSMUSG00000044068.8	ENSMUST00000049506.8	4492	1	0	1357	0	-1357	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGTGTGTGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	22922004	22925139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_22922000_22925100
ONT_simulated_read_16199940	chr5	-	568	4	ISM	ENSMUSG00000039747.12	ENSMUST00000196454.5	3990	5	2153	3332	2153	-3332	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACAACCTCAACTCCATC	NA	NA	NA	NA	NA	NA	NA	NA	136197329	136179649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_136179807_136190340_136190579_136196678_136196742_136197219
ONT_simulated_read_16200903	chr5	-	753	3	ISM	ENSMUSG00000029401.9	ENSMUST00000031347.8	1391	4	56	5357	56	-5357	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCGAGAAGGAGGAGAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	124616373	124606684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_124606755_124607760_124607913_124615842
ONT_simulated_read_16202636	chr17	+	3183	16	FSM	ENSMUSG00000024068.9	ENST00000644954.1	3150	16	-33	0	-33	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTAGGATCATATGCTG	NA	NA	NA	NA	NA	NA	NA	NA	74646130	74696840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_74646441_74658944_74659032_74663080_74663165_74674242_74674431_74675822_74675957_74676186_74676281_74678424_74678500_74679253_74679326_74680278_74680355_74680657_74680750_74681117_74681198_74682077_74682121_74684035_74684116_74688964_74689036_74694028_74694070_74695184
ONT_simulated_read_16202966	chr7	-	960	5	ISM	ENSMUSG00000058420.9	ENSMUST00000203796.4	2957	8	163	53337	163	-26342	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGACGGGAGTCAAACGC	NA	NA	NA	NA	NA	NA	NA	NA	118047279	118033279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_118033676_118036045_118036195_118041570_118041720_118042341_118042365_118047036
ONT_simulated_read_16205692	chr10	-	529	4	ISM	ENSMUSG00000020167.15	ENSMUST00000105340.8	2826	19	18346	605	15723	-177	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAGAAGGTGTCTGGCGT	NA	NA	NA	NA	NA	NA	NA	NA	80251123	80246064	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80246109_80246231_80246456_80249038_80249172_80250995
ONT_simulated_read_16213436	chr1	+	464	1	ISM	ENSMUSG00000026208.10	ENSMUST00000027409.10	3028	9	0	7787	0	-7787	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTTCTTGGAGCAGCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	75336972	75337436	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_75337000_75337400
ONT_simulated_read_16213677	chr9	-	265	1	ISM	ENSMUSG00000031927.10	ENSMUST00000191047.7	654	4	12558	0	12558	0	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACAGTTCTTCTGTTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	14669751	14669486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_14669500_14669800
ONT_simulated_read_16213879	chr1	-	2249	1	ISM	ENSMUSG00000026667.15	ENSMUST00000150821.8	7676	8	14747	4319	14747	-4319	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTAGAGTTGACACTGTA	NA	NA	NA	NA	NA	NA	NA	NA	170027556	170025307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_170025300_170027600
ONT_simulated_read_16220232	chr8	+	1152	6	ISM	ENSMUSG00000007888.16	ENST00000684169.1	1282	8	-108	2363	0	-2363	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCACCTCTCCAGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	70945807	70953928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70946051_70951246_70951529_70951742_70951873_70951979_70952150_70953533_70953692_70953759
ONT_simulated_read_16224936	chr7	+	483	6	ISM	ENSMUSG00000030880.15	ENST00000615879.4	3016	20	34	15384	0	-14849	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCTACAGCTTCGGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	120517006	120530129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_120517134_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101
ONT_simulated_read_16225411	chrX	-	219	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	0	531	0	-531	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCTGCTGTTGAGTAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	68649851	68649632	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_68649600_68649900
ONT_simulated_read_16227502	chr11	+	809	6	ISM	ENSMUSG00000020459.15	ENSMUST00000093239.11	2741	14	6833	5083	6833	-5083	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGGAAAAATACTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	29483289	29490165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067
ONT_simulated_read_16229051	chr10	+	1111	5	ISM	ENSMUSG00000020156.17	ENSMUST00000020365.15	2640	14	0	11100	0	-9058	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGAGCCCTGTGCCGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	80062267	80068637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_80062539_80064155_80064273_80064828_80064915_80065890_80065962_80068071
ONT_simulated_read_16231548	chr3	+	169	1	ISM	ENSMUSG00000027985.15	ENSMUST00000029611.14	3482	12	0	113717	0	-112544	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGCTGGAACATTTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	130904119	130904288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_130904100_130904300
ONT_simulated_read_16235342	chr16	+	702	4	ISM	ENSMUSG00000022884.17	ENSMUST00000187168.7	1238	12	-279	3884	0	-3884	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTCAGGTTTCACAACT	NA	NA	NA	NA	NA	NA	NA	NA	22926228	22928050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869
ONT_simulated_read_16235583	chrX	+	1198	1	FSM	ENSMUSG00000048040.9	ENSMUST00000058119.9	1532	1	0	334	0	-334	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATCTTCTAGGGTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	134894572	134895770	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_134894600_134895800
ONT_simulated_read_16238963	chr15	+	444	1	NIC	ENSMUSG00000033728.15	novel	4849	4	NA	NA	0	-3861	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTGCCTTAAGGACTCGTA	NA	NA	NA	NA	NA	NA	NA	NA	76594930	76595374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_+_76594900_76595400
ONT_simulated_read_16239073	chr9	+	737	5	ISM	ENSMUSG00000032220.11	ENSMUST00000034745.9	4625	28	0	83103	0	-83103	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCCAAGGTCCAGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	70114649	70223945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_70114986_70194193_70194338_70204548_70204639_70208974_70209070_70223873
ONT_simulated_read_16240585	chr10	+	358	3	ISM	ENSMUSG00000078451.6	ENST00000424445.6	628	4	85	281	38	-281	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGATCTTTCTCCAAT	NA	NA	NA	NA	NA	NA	NA	NA	41366472	41377644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_41366618_41374357_41374547_41377620
ONT_simulated_read_16243645	chr19	-	721	1	ISM	ENSMUSG00000035783.10	ENSMUST00000039631.10	2035	9	13780	0	13780	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5491	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAAGCCTTGCGTATTAT	NA	NA	NA	NA	NA	NA	NA	NA	34219210	34218489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_34218500_34219200
ONT_simulated_read_16244193	chr3	-	1306	1	NIC	ENSMUSG00000014599.11	novel	3058	9	NA	NA	7833	-793	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCTCCAGACCTGACCC	NA	NA	NA	NA	NA	NA	NA	NA	107650462	107649156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_107649200_107650500
ONT_simulated_read_16246874	chr11	-	278	1	ISM	ENSMUSG00000020774.10	ENSMUST00000021119.9	1530	6	19013	352	19013	-352	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGCCTGGCCCCGTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	73196447	73196169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_73196200_73196400
ONT_simulated_read_16248718	chr17	-	3430	7	NIC	ENSMUSG00000052105.18	novel	5830	14	NA	NA	71891	-187	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAGACAATGGCTCCATT	NA	NA	NA	NA	NA	NA	NA	NA	66673497	66644177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_66645150_66647478_66647536_66649820_66651361_66655237_66655517_66661117_66661373_66665016_66665185_66673338
ONT_simulated_read_16249205	chr5	+	1829	12	ISM	ENSMUSG00000028883.20	ENSMUST00000030714.9	5930	17	268	32332	268	-30755	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGGTGAGTGCTGACTAAT	NA	NA	NA	NA	NA	NA	NA	NA	13449543	13620201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_13450037_13501070_13501229_13505510_13505574_13523365_13523486_13566170_13566265_13573020_13573141_13606494_13606638_13606976_13607092_13607231_13607302_13611730_13611876_13615717_13615938_13620113
ONT_simulated_read_16250760	chr5	+	481	5	ISM	ENSMUSG00000029518.16	ENSMUST00000031492.15	2820	6	233	4039	233	-4039	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTAAGCTCCGGCTGAGCC	NA	NA	NA	NA	NA	NA	NA	NA	115770199	115781756	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_115770258_115775774_115775826_115778138_115778263_115781426_115781552_115781633
ONT_simulated_read_16253779	chr9	+	766	3	FSM	ENSMUSG00000036972.15	ENST00000491672.5	829	3	13	50	13	-50	multi-exon	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCTCTGCGGCGGT	NA	NA	NA	NA	NA	NA	NA	NA	91250864	91266332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_91251280_91254660_91254746_91266066
ONT_simulated_read_16255037	chr7	-	1807	13	ISM	ENSMUSG00000037606.19	ENST00000525498.5	2546	19	6543	0	6543	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	159	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCAGTGTGCCCCTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	143257048	143243293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143243695_143245624_143245728_143246594_143246722_143247508_143247636_143247934_143248121_143248545_143248683_143248776_143248867_143249251_143249350_143252970_143253070_143254450_143254548_143254928_143255028_143256426_143256509_143256887
ONT_simulated_read_16257062	chr17	-	734	3	ISM	ENSMUSG00000067212.9	ENSMUST00000102678.5	1472	7	433	934	433	-934	internal_fragment	FALSE	canonical	NA	NA	NA	NA	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTCGTGGTGCCTCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	36343314	36341801	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_36341990_36342529_36342806_36343044
ONT_simulated_read_16257239	chr4	+	471	2	ISM	ENSMUSG00000025791.19	ENSMUST00000058351.16	2371	11	0	25766	0	-25669	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTATTGGTGGGATCATT	NA	NA	NA	NA	NA	NA	NA	NA	99786610	99818725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_99787009_99818652
ONT_simulated_read_16260782	chr19	+	1034	8	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	1175	879	1175	-497	internal_fragment	FALSE	canonical	NA	NA	NA	NA	453	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGACAAACTGAGGAAGAATG	NA	NA	NA	NA	NA	NA	NA	NA	8945579	8954964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948
ONT_simulated_read_16264255	chr11	-	781	4	ISM	ENSMUSG00000040481.18	ENST00000342579.8	10504	31	70999	21228	-15914	-12425	internal_fragment	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTCCCAAGCACAGACATC	NA	NA	NA	NA	NA	NA	NA	NA	106951407	106945926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106946145_106946697_106946933_106949459_106949678_106951297
ONT_simulated_read_16264821	chr3	+	665	3	ISM	ENSMUSG00000027963.15	ENSMUST00000106502.2	2840	5	0	4682	0	-4682	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGTGATCGTGGTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	115801868	115817927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_115802187_115804270_115804346_115817655
ONT_simulated_read_16264903	chr15	-	1007	1	ISM	ENSMUSG00000037343.9	ENSMUST00000041733.9	5031	26	56015	0	56015	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTCTGCCTTTGTTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	54879533	54878526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_54878500_54879500
ONT_simulated_read_16264937	chr3	-	1612	6	ISM	ENSMUSG00000042642.14	ENSMUST00000107426.8	2238	8	2707	275	23	242	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCAACCACAGCCAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	89316469	89310248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728
ONT_simulated_read_16265348	chr12	-	2037	1	NIC	ENSMUSG00000004698.12	novel	7940	25	NA	NA	63198	141	mono-exon	FALSE	NA	NA	NA	NA	NA	437	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTATCACCAATATGTTT	NA	NA	NA	NA	NA	NA	NA	NA	34424108	34422071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_34422100_34424100
ONT_simulated_read_16266377	chr7	-	722	1	ISM	ENSMUSG00000040857.16	ENSMUST00000045847.15	3505	4	5253	2226	4732	660	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGTTCAAGTTTAAGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	24944933	24944211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_24944200_24944900
ONT_simulated_read_16267071	chr7	-	1311	6	ISM	ENSMUSG00000003420.9	ENSMUST00000003512.9	1770	7	603	222	497	-148	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGCTGTGTGACCTCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	44752672	44742635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426
ONT_simulated_read_1626774	chr9	+	469	2	NIC	ENSMUSG00000095547.2	novel	681	5	NA	NA	0	199	intron_retention	TRUE	canonical	NA	NA	NA	NA	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTCATTTTCCATGAT	NA	NA	NA	NA	NA	NA	NA	NA	3020154	3021090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_3020319_3020785
ONT_simulated_read_16267960	chr5	-	477	2	FSM	ENSMUSG00000037822.13	ENST00000511809.5	477	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAGTGACAGAGCCACAC	NA	NA	NA	NA	NA	NA	NA	NA	65617912	65607349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_65607781_65617866
ONT_simulated_read_16268919	chr1	-	702	4	ISM	ENSMUSG00000037351.10	ENSMUST00000043951.10	3248	11	8700	1641	8700	-1641	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAGCTCTGAGACCAGA	NA	NA	NA	NA	NA	NA	NA	NA	36740389	36738835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214
ONT_simulated_read_16269851	chrX	-	450	1	ISM	ENSMUSG00000087591.8	ENSMUST00000146535.8	1409	4	14157	608	14157	-608	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCTTTGATCCTCGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	12207078	12206628	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_12206600_12207100
ONT_simulated_read_16270148	chr11	+	512	5	ISM	ENSMUSG00000038845.12	ENST00000355202.9	983	7	-19	4419	-9	-4419	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGGTGAGCGATGACCTC	NA	NA	NA	NA	NA	NA	NA	NA	95557825	95566444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395
ONT_simulated_read_16271756	chr6	+	907	6	ISM	ENSMUSG00000029686.16	ENST00000662132.1	3037	21	12	23620	0	17325	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTTTTGGCTGACACAG	NA	NA	NA	NA	NA	NA	NA	NA	47431321	47479436	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_47431418_47461677_47461979_47472000_47472176_47474154_47474323_47478632_47478724_47479360
ONT_simulated_read_16272575	chr9	-	814	1	ISM	ENSMUSG00000031988.11	ENSMUST00000034470.11	3575	6	20046	1435	20046	-1435	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACACATGGATGGCAAGG	NA	NA	NA	NA	NA	NA	NA	NA	26921315	26920501	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_26920500_26921300
ONT_simulated_read_16276421	chr6	-	1781	1	ISM	ENSMUSG00000030203.18	ENSMUST00000129433.4	3993	7	74400	827	43355	-822	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGATTGCTGAAACCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	134695038	134693257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_134693300_134695000
ONT_simulated_read_16276965	chr7	-	83	1	ISM	ENSMUSG00000030760.15	ENSMUST00000033020.14	11340	11	92654	10413	92578	0	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGTAGTTCTGCCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	97866091	97866008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_97866000_97866100
ONT_simulated_read_16282279	chr14	+	2114	16	ISM	ENSMUSG00000021975.10	ENSMUST00000043914.8	2674	17	0	2349	0	-2349	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGCTGGTGGCCTGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	65187493	65274932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422_65230563_65232430_65232518_65244694_65244816_65245439_65245575_65253978_65254091_65257764_65257946_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274794
ONT_simulated_read_16282812	chr9	+	1058	8	ISM	ENSMUSG00000034739.18	ENST00000360167.4	1577	10	34	1316	18	-1316	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGATGCACCAGCTGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	44013084	44016485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_44013244_44013330_44013434_44013547_44013662_44013762_44013937_44014078_44014293_44014513_44014645_44014754_44014881_44016448
ONT_simulated_read_16283353	chr13	-	226	2	ISM	ENSMUSG00000060147.16	ENSMUST00000043552.17	1547	7	115	13665	0	-13656	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGGTGAAGACAGCTCAAA	NA	NA	NA	NA	NA	NA	NA	NA	34120066	34115565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_34115630_34119904
ONT_simulated_read_16287302	chr1	-	1093	10	ISM	ENSMUSG00000041670.20	ENST00000401910.7	3126	24	3430	139325	3430	-139139	internal_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGCCTCCCGAAGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	22522304	22497784	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_22497838_22498715_22498873_22503022_22503095_22504097_22504252_22504353_22504526_22507271_22507403_22511805_22511919_22514768_22514816_22518515_22518640_22522234
ONT_simulated_read_16289253	chr2	-	759	6	ISM	ENSMUSG00000027566.16	ENSMUST00000029082.9	914	7	2953	0	2930	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	2528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	179681273	179678166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145
ONT_simulated_read_1629098	chr9	-	694	3	ISM	ENSMUSG00000032040.16	ENSMUST00000119847.2	1445	7	49669	0	49669	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTGATGGTGTAGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	35037686	35035707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_35036141_35036462_35036640_35037602
ONT_simulated_read_16293714	chr3	+	322	3	ISM	ENSMUSG00000025757.14	ENSMUST00000204702.3	9479	19	153	42895	153	-36376	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCCCATTGTGCAAACGG	NA	NA	NA	NA	NA	NA	NA	NA	40700014	40707643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_40700217_40705106_40705165_40707581
ONT_simulated_read_16295512	chr15	-	185	2	ISM	ENSMUSG00000062906.13	ENSMUST00000082197.12	2412	20	4997	127	4616	-127	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGGGCGATTCACACGT	NA	NA	NA	NA	NA	NA	NA	NA	89007906	89007636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_89007683_89007767
ONT_simulated_read_16299846	chr15	-	285	5	ISM	ENSMUSG00000022555.13	ENSMUST00000023214.11	1888	17	8345	987	8345	-987	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTCTGCAGTTTGGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	76387806	76387201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76387272_76387353_76387399_76387473_76387516_76387589_76387629_76387717
ONT_simulated_read_16300354	chrX	-	1181	9	ISM	ENSMUSG00000031174.18	ENSMUST00000115534.8	2795	17	7630	7984	7630	-5592	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACTGTAGAAGAAGAAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	10075062	10032438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911
ONT_simulated_read_16302609	chr2	-	1008	5	ISM	ENSMUSG00000074577.10	ENST00000327979.8	2704	19	10641	3720	10641	-3720	internal_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTCCTGGCCTGCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	167831726	167826462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_167826527_167826992_167827129_167827568_167827693_167828392_167828524_167831173
ONT_simulated_read_16302886	chr18	-	399	4	ISM	ENSMUSG00000024357.11	ENSMUST00000025215.10	1703	10	60552	74774	60485	-74774	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGACCTCAAGAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	35571430	35474222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_35474251_35481692_35481814_35551109_35551249_35571319
ONT_simulated_read_16305497	chrX	-	1384	2	ISM	ENSMUSG00000034403.17	ENSMUST00000113790.8	2108	3	2402	624	2387	-216	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGGGGAAAGGAAACTTTC	NA	NA	NA	NA	NA	NA	NA	NA	98511891	98509967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_98511189_98511728
ONT_simulated_read_16307010	chr16	-	2168	4	ISM	ENSMUSG00000022828.11	ENSMUST00000023525.9	3084	5	3615	760	3615	-760	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	141	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGTGTAGAAGTGCTGAT	NA	NA	NA	NA	NA	NA	NA	NA	37356536	37330911	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_37332182_37336080_37336323_37343112_37343315_37356082
ONT_simulated_read_16308638	chr4	-	471	1	NIC	ENSMUSG00000003731.14	novel	664	2	NA	NA	1	-198	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCAATTTGCACCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	129541945	129541474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_129541500_129541900
ONT_simulated_read_16313381	chr1	-	663	6	ISM	ENSMUSG00000061816.16	ENSMUST00000027151.12	1082	7	156	728	156	-725	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGACATCTATCCTCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	66984146	66964181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_66964225_66965366_66965445_66965692_66965867_66969344_66969489_66973404_66973433_66983950
ONT_simulated_read_1631463	chr2	-	328	1	ISM	ENSMUSG00000010914.11	ENSMUST00000011058.9	2506	11	51270	841	51219	-841	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCTGTACATGTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	102852588	102852260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_102852300_102852600
ONT_simulated_read_16314763	chr3	+	337	1	ISM	ENSMUSG00000028137.10	ENST00000290583.9	3427	13	166	13540	0	-13358	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCCAGATCTCTGGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	94385800	94386137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_94385800_94386100
ONT_simulated_read_16316496	chr10	-	461	3	ISM	ENSMUSG00000020079.16	ENSMUST00000020273.16	2604	15	17363	401	17363	-401	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAAGGCCACAGAGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	62268154	62265388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62265614_62266249_62266399_62268067
ONT_simulated_read_16319780	chr13	-	2929	1	FSM	ENSMUSG00000113440.2	ENSMUST00000221461.2	4114	1	0	1185	0	-1185	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGTACTTCTATAATTTT	NA	NA	NA	NA	NA	NA	NA	NA	23630105	23627176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_23627200_23630100
ONT_simulated_read_16324557	chr5	-	1790	9	ISM	ENSMUSG00000034826.15	ENSMUST00000038514.15	2352	12	6893	109	6893	-109	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	125	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGGATATGACAAAATCACC	NA	NA	NA	NA	NA	NA	NA	NA	92576185	92563507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573670_92575958
ONT_simulated_read_16324981	chr10	-	1177	6	ISM	ENSMUSG00000013833.16	ENSMUST00000165684.8	2950	15	5469	3446	4204	-3105	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGTGTGACTACCACAC	NA	NA	NA	NA	NA	NA	NA	NA	79739263	79734214	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_79734281_79734730_79734938_79735034_79735244_79735930_79736087_79738256_79738363_79738830
ONT_simulated_read_16325542	chr18	-	943	7	ISM	ENSMUSG00000024500.21	ENSMUST00000117687.8	2271	9	161253	655	161253	-196	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAACAGCAAACCCCGGG	NA	NA	NA	NA	NA	NA	NA	NA	42871106	42778988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_42779073_42781738_42781831_42796174_42796345_42821366_42821532_42834534_42834713_42864851_42864965_42870965
ONT_simulated_read_16326523	chr14	+	4152	16	ISM	ENSMUSG00000021767.20	ENST00000372714.6	5910	17	16024	1281	0	-1140	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAAACGGCTCTTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	21566942	21719801	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
ONT_simulated_read_16328264	chr13	-	472	1	ISM	ENSMUSG00000038042.12	ENSMUST00000035824.11	4402	10	45832	1489	13528	-151	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCATTTTAGTAGTAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	48733308	48732836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_48732800_48733300
ONT_simulated_read_16329090	chr14	-	793	6	NIC	ENSMUSG00000022090.11	novel	1523	10	NA	NA	2879	0	combination_of_known_junctions	TRUE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGGTGATAGCAGGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	70409052	70401995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_70402243_70403538_70403657_70405109_70405235_70405413_70405494_70408668_70408748_70408908
ONT_simulated_read_1633299	chr1	-	385	4	ISM	ENSMUSG00000057173.9	ENST00000646446.1	1860	14	37561	5243	37561	-5062	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTCACATCCTGGAGTC	NA	NA	NA	NA	NA	NA	NA	NA	39720138	39709705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_39709744_39711345_39711461_39717816_39717912_39720001
ONT_simulated_read_16335212	chr6	+	302	3	ISM	ENSMUSG00000000693.11	ENST00000409986.5	1762	10	14389	329	14389	-329	internal_fragment	FALSE	canonical	NA	NA	NA	NA	845	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGGGCATCACCGTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	83026848	83027324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_83026999_83027096_83027213_83027288
ONT_simulated_read_16335498	chr7	+	834	5	FSM	ENSMUSG00000025439.6	ENST00000532069.5	784	5	-50	0	-50	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTCAGCTGCAAGATTC	NA	NA	NA	NA	NA	NA	NA	NA	97345901	97367684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_97346077_97354795_97354933_97363113_97363288_97365657_97365747_97367425
ONT_simulated_read_16338315	chr7	+	979	12	ISM	ENSMUSG00000030880.15	ENST00000564209.5	2452	21	-2	11878	0	-11878	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTACATTGCCTCTGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	120517006	120533100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101_120530210_120530483_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055
ONT_simulated_read_16339341	chr13	-	1655	5	ISM	ENSMUSG00000057554.14	ENSMUST00000143693.8	2457	9	8714	262	6477	-256	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGATATTGGGGGCTCAA	NA	NA	NA	NA	NA	NA	NA	NA	12467660	12454560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602
ONT_simulated_read_16339716	chr4	-	350	3	ISM	ENSMUSG00000038816.15	ENSMUST00000107612.3	850	5	20521	131	20521	-131	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGATCCCCACATGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	56844633	56840876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_56840920_56841560_56841681_56844446
ONT_simulated_read_16341558	chr6	+	504	5	ISM	ENSMUSG00000025702.16	ENSMUST00000203193.3	4245	7	54468	3476	54468	-294	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCCATCGGCTTCACTGG	NA	NA	NA	NA	NA	NA	NA	NA	116369484	116383023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_116369536_116377997_116378084_116380380_116380562_116382595_116382744_116382985
ONT_simulated_read_16341712	chr5	+	691	6	ISM	ENSMUSG00000042605.17	ENST00000673283.1	3462	23	85318	3109	85318	-2891	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGACAGTCTTCACCATCC	NA	NA	NA	NA	NA	NA	NA	NA	121935421	121949596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_121935439_121935787_121935849_121940143_121940329_121941010_121941144_121948913_121949060_121949447
ONT_simulated_read_16344443	chr9	-	1912	13	ISM	ENSMUSG00000034533.11	ENSMUST00000214408.2	5877	27	0	42112	0	-42078	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGAAGTACCTGATATGG	NA	NA	NA	NA	NA	NA	NA	NA	119523391	119480102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_119480151_119487468_119487581_119490188_119490483_119493846_119494018_119494952_119495151_119495431_119495574_119499019_119499084_119499408_119499601_119500586_119500679_119501183_119501313_119516945_119517027_119520509_119520629_119523121
ONT_simulated_read_16344488	chr7	-	643	2	ISM	ENSMUSG00000019370.11	ENST00000594523.5	534	6	6744	-497	6744	489	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCAGGACCGAGGGAGTT	NA	NA	NA	NA	NA	NA	NA	NA	16651090	16650349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_16650902_16650999
ONT_simulated_read_16346363	chr2	-	3137	19	ISM	ENSMUSG00000058594.16	ENSMUST00000071564.14	3567	21	9870	124	9870	-124	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCCTCAGGCCAGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	11772523	11747509	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932
ONT_simulated_read_1634757	chr7	-	2451	2	ISM	ENSMUSG00000035227.8	ENSMUST00000036274.8	2909	5	14142	0	14064	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCTTTTCCTTTCAGTA	NA	NA	NA	NA	NA	NA	NA	NA	99494042	99486775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_99489091_99493906
ONT_simulated_read_16348786	chr17	-	617	4	ISM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	25346	1202	25346	-1202	internal_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGGGACCAGATTGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	45719317	45704011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_45704132_45715519_45715718_45718721_45718965_45719261
ONT_simulated_read_16351825	chr7	+	1488	7	ISM	ENSMUSG00000062031.14	ENST00000409479.5	2139	12	1	1136	1	-1136	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGACTCTGAGCAGAACTT	NA	NA	NA	NA	NA	NA	NA	NA	140522267	140525626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_140522479_140522898_140523110_140523189_140523626_140524557_140524678_140524863_140524996_140525150_140525441_140525538
ONT_simulated_read_16354249	chr1	-	782	3	ISM	ENSMUSG00000026398.15	ENSMUST00000168126.7	3446	7	8524	38104	8524	-36917	internal_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCGCGTTCAACAACCTCC	NA	NA	NA	NA	NA	NA	NA	NA	136868776	136810117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_136810150_136818420_136818541_136868146
ONT_simulated_read_16355576	chr7	+	1247	13	ISM	ENSMUSG00000002963.18	ENSMUST00000098478.7	1550	15	1154	0	1076	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCACAGCCATCTTGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	44507919	44512073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_44508174_44509146_44509227_44509311_44509370_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
ONT_simulated_read_16357200	chr2	-	2680	11	ISM	ENSMUSG00000068742.12	ENST00000443527.6	3835	13	6987	1039	6987	-1039	internal_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGCACCTGAGCAAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	92257333	92235032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_92236166_92241970_92242113_92242958_92243052_92243293_92243497_92243611_92243764_92243980_92244293_92246498_92246640_92252506_92252596_92253222_92253408_92254889_92255033_92257246
ONT_simulated_read_16358465	chr11	+	654	6	ISM	ENSMUSG00000033857.13	ENSMUST00000135383.9	4064	14	7661	2321	5597	-600	internal_fragment	FALSE	canonical	NA	NA	NA	NA	327	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGCCGGGAGGAGGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	118375315	118377714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_118375348_118375665_118375775_118375949_118376141_118376582_118376732_118377273_118377380_118377647
ONT_simulated_read_16359101	chr7	-	1400	3	ISM	ENSMUSG00000074364.7	ENSMUST00000098799.5	5119	6	9663	3014	9663	-3014	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATACACAGACATCCATC	NA	NA	NA	NA	NA	NA	NA	NA	15691829	15683896	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_15684718_15685990_15686156_15691415
ONT_simulated_read_16360843	chr9	+	1539	12	ISM	ENSMUSG00000031129.10	ENSMUST00000033463.10	3468	16	23	174940	23	-174940	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCACTGTCTGGGTGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	94551984	94937558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_94552290_94567107_94567311_94593396_94593475_94594947_94595025_94691979_94692096_94737743_94737850_94818362_94818502_94821508_94821615_94842450_94842540_94901157_94901272_94902653_94902766_94937464
ONT_simulated_read_16361124	chr19	-	430	4	ISM	ENSMUSG00000024914.17	ENSMUST00000136579.3	734	6	591	88	591	-88	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTCCTAGCGCCCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	5473951	5472958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5473054_5473358_5473448_5473587_5473682_5473799
ONT_simulated_read_1636274	chrX	-	380	1	ISM	ENSMUSG00000031161.16	ENSMUST00000115642.8	4069	29	17386	4	16501	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGAAAGTGCTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	7796742	7796362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_7796400_7796700
ONT_simulated_read_16365579	chr4	-	2411	1	ISM	ENSMUSG00000040842.18	ENSMUST00000102487.4	3244	4	23923	432	23923	-432	mono-exon	FALSE	NA	NA	NA	NA	NA	265	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTCAATCAGGGTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	140843154	140840743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_140840700_140843200
ONT_simulated_read_16366397	chrX	+	963	1	FSM	ENSMUSG00000050900.6	ENSMUST00000120925.2	652	1	0	-311	0	311	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTTTCCACAGTATTCGA	NA	NA	NA	NA	NA	NA	NA	NA	60828986	60829949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_60829000_60829900
ONT_simulated_read_16368913	chr2	-	795	1	ISM	ENSMUSG00000037820.16	ENSMUST00000103122.10	3596	13	29240	0	29240	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGCCTTGTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	157959116	157958321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_157958300_157959100
ONT_simulated_read_16373950	chr9	-	277	1	ISM	ENSMUSG00000111692.2	ENSMUST00000213826.2	1945	7	5199	5221	5199	-5221	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGATGGGTCTCCATCTT	NA	NA	NA	NA	NA	NA	NA	NA	20979193	20978916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_20978900_20979200
ONT_simulated_read_16376573	chr19	-	406	3	ISM	ENSMUSG00000024787.15	ENSMUST00000025702.14	1635	8	6803	531	6646	-78	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTGTGAAGAAGAAGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	6171531	6169959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6169985_6170515_6170774_6171408
ONT_simulated_read_16377541	chr5	-	1168	1	ISM	ENSMUSG00000001687.16	ENSMUST00000079324.14	2537	5	46491	369	46491	125	mono-exon	FALSE	NA	NA	NA	NA	NA	249	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGCATTATAAACCAGTATT	NA	NA	NA	NA	NA	NA	NA	NA	148442981	148441813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_148441800_148443000
ONT_simulated_read_16381842	chr19	-	321	3	ISM	ENSMUSG00000024792.10	ENSMUST00000025707.9	1287	8	2471	1103	2471	-1103	internal_fragment	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCCCAGCTGCTCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	6132502	6131894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6131995_6132210_6132358_6132428
ONT_simulated_read_16382452	chr6	-	1753	11	ISM	ENSMUSG00000003500.14	ENSMUST00000078155.12	2437	14	5299	305	2270	-304	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCCTCTCAGCCATGTG	NA	NA	NA	NA	NA	NA	NA	NA	29206997	29200740	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921
ONT_simulated_read_16384023	chr10	-	450	1	NIC	ENSMUSG00000000435.2	novel	2083	3	NA	NA	1923	-854	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTCTGTTGGAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	107320072	107319622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_107319600_107320100
ONT_simulated_read_16385097	chr7	+	581	5	ISM	ENSMUSG00000030691.16	ENST00000311172.11	4123	19	150782	6911	-16968	-5407	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATCTTGAACAAAGAAAACC	NA	NA	NA	NA	NA	NA	NA	NA	100908875	100926695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_100908981_100920776_100920912_100925824_100925909_100926032_100926211_100926616
ONT_simulated_read_16388491	chr1	-	2391	4	ISM	ENSMUSG00000033845.14	ENSMUST00000156816.7	4203	5	1633	1646	1604	-1646	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	197	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTTGAGTTAGTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	4854329	4845079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_4847025_4847747_4847872_4852790_4852957_4854173
ONT_simulated_read_16389747	chr14	-	636	3	ISM	ENSMUSG00000021782.15	ENSMUST00000090398.11	7851	32	55428	42553	55428	-42553	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTCCGAGCTGGACAAGC	NA	NA	NA	NA	NA	NA	NA	NA	24240560	24226575	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_24226777_24227795_24228056_24240385
ONT_simulated_read_16390147	chr3	-	1366	5	ISM	ENSMUSG00000027962.15	ENST00000347652.6	2453	7	4159	490	4159	-234	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACCAAGCCATGCATTCA	NA	NA	NA	NA	NA	NA	NA	NA	115918298	115904442	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_115904687_115908001_115908269_115909533_115909801_115910871_115911193_115918031
ONT_simulated_read_16390808	chr4	-	408	5	ISM	ENSMUSG00000028873.17	ENSMUST00000030690.12	1264	10	10157	1193	9971	-1193	internal_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGCAAAGAGATCTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	124820509	124814096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457
ONT_simulated_read_16391398	chr5	-	337	1	ISM	ENSMUSG00000032741.10	ENSMUST00000046426.10	4712	28	52458	1726	52458	45	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACCATGGAAAACTCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	120674280	120673943	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_120673900_120674300
ONT_simulated_read_16391617	chr11	-	1350	11	ISM	ENSMUSG00000001507.17	ENSMUST00000107739.8	4636	25	5980	12286	5980	-12286	internal_fragment	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCATTGCTCACCCTAGAG	NA	NA	NA	NA	NA	NA	NA	NA	94954044	94947585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_94947678_94947909_94948008_94948096_94948247_94948792_94948930_94949037_94949106_94950149_94950237_94950381_94950519_94950604_94950694_94952703_94952901_94953378_94953590_94953960
ONT_simulated_read_16391880	chr7	+	2314	16	ISM	ENSMUSG00000035632.17	ENSMUST00000038913.16	2822	18	0	2368	0	-2358	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACAGCAGGGCCCCCGGGG	NA	NA	NA	NA	NA	NA	NA	NA	3648350	3661740	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607
ONT_simulated_read_16393257	chr5	+	392	3	ISM	ENSMUSG00000029577.14	ENSMUST00000074002.12	5194	28	226	33915	226	-32414	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCGACTGCACAGAGACA	NA	NA	NA	NA	NA	NA	NA	NA	114518893	114525315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_114519037_114522375_114522464_114525154
ONT_simulated_read_16393806	chr3	-	3740	1	ISM	ENSMUSG00000028106.14	ENSMUST00000090791.8	7756	11	52345	2333	52345	-2333	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTCTCCTGCTTTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	95673725	95669985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95670000_95673700
ONT_simulated_read_1639384	chr12	-	2476	13	ISM	ENSMUSG00000015143.16	ENST00000684639.1	3474	21	76552	179	76468	35	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCTGCTTTTCAAAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	80230397	80214509	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_80215255_80215631_80215791_80216956_80217023_80217459_80217541_80218502_80218650_80219736_80219917_80220853_80220989_80221233_80221417_80222929_80223071_80223961_80224071_80225075_80225227_80228134_80228283_80230166
ONT_simulated_read_16394173	chr15	-	493	1	NIC	ENSMUSG00000051359.16	novel	3538	7	NA	NA	28526	190	mono-exon	FALSE	NA	NA	NA	NA	NA	323	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACACATGCCCTGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	37369170	37368677	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_37368700_37369200
ONT_simulated_read_16399354	chr2	-	534	3	ISM	ENSMUSG00000018770.10	ENSMUST00000111996.8	723	5	1383	0	1355	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	NA	NA	NA	NA	NA	NA	NA	73740286	73738790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_73739052_73739527_73739722_73740207
ONT_simulated_read_16401311	chr7	-	1324	12	ISM	ENSMUSG00000030824.18	ENSMUST00000211765.2	4853	13	570	3434	490	-784	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTCCCAGAGCAGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	45159260	45143315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45143374_45143540_45143638_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129
ONT_simulated_read_16401697	chr2	-	2058	10	ISM	ENSMUSG00000057182.16	ENST00000639244.1	8899	28	42460	39581	42460	-37366	internal_fragment	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGGGAGTGGATAGAG	NA	NA	NA	NA	NA	NA	NA	NA	65355205	65327817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_65328071_65329210_65329385_65336360_65336600_65337490_65337624_65338709_65339007_65344815_65345107_65351166_65351374_65352135_65352278_65354489_65354554_65354947
ONT_simulated_read_1640457	chr5	-	1421	4	ISM	ENSMUSG00000029513.15	ENSMUST00000031486.14	2089	7	4378	4	4378	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACTTTTGACTCGGCACA	NA	NA	NA	NA	NA	NA	NA	NA	116158143	116151648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062
ONT_simulated_read_16406602	chrX	+	1256	3	NIC	ENSMUSG00000073008.12	novel	3093	3	NA	NA	0	-1864	intron_retention	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGAAAGAAACCAAAAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	106299633	106336330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_+_106300106_106312487_106312570_106335628
ONT_simulated_read_16406644	chr11	-	2109	1	NIC	ENSMUSG00000017802.15	novel	3179	8	NA	NA	21222	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTTCGTTGTGTACT	NA	NA	NA	NA	NA	NA	NA	NA	100989447	100987338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_100987300_100989400
ONT_simulated_read_16407097	chr9	+	2321	1	ISM	ENSMUSG00000038145.18	ENSMUST00000118886.9	4811	7	49444	638	49441	-638	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTGGTCTCCAGTGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	121995809	121998130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_121995800_121998100
ONT_simulated_read_16407626	chr5	+	714	5	FSM	ENSMUSG00000054434.15	ENST00000540377.1	868	5	67	87	67	-87	multi-exon	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTCTCTTCCTACTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	123242548	123255167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_123242575_123253162_123253256_123253723_123253789_123254264_123254334_123254706
ONT_simulated_read_16414365	chr16	+	969	10	ISM	ENSMUSG00000045983.17	ENST00000346169.7	5394	33	12	13547	-3	-13212	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGGGTCTGAGTCTAATC	NA	NA	NA	NA	NA	NA	NA	NA	20491569	20498086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962
ONT_simulated_read_16414392	chr8	+	1687	4	ISM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	39432	294	32476	-256	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAAAAGTGATTCTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	106402642	106409260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_106402811_106403846_106403983_106406702_106406892_106408066
ONT_simulated_read_16414624	chr8	-	281	3	ISM	ENSMUSG00000031736.12	ENSMUST00000034183.10	1238	7	11080	212	10791	-212	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGAACCCCAGCTCTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	93071668	93052877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_93052895_93053014_93053091_93071480
ONT_simulated_read_16418208	chr6	-	822	5	ISM	ENSMUSG00000029752.13	ENST00000641079.1	1068	6	7041	0	6994	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1691	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGCTCTGAAGGTCGAGACA	NA	NA	NA	NA	NA	NA	NA	NA	7682457	7675275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_7675525_7675992_7676149_7681249_7681378_7681933_7682036_7682270
ONT_simulated_read_16419915	chr17	+	799	7	ISM	ENSMUSG00000069135.12	ENSMUST00000024636.15	3077	12	0	14025	0	-13846	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGAGTAGACTCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	8384371	8401282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8401059
ONT_simulated_read_16423566	chr7	-	702	1	NIC	ENSMUSG00000025147.8	novel	1646	6	NA	NA	16496	-328	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGGAGTTCTGCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	141563316	141562614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_141562600_141563300
ONT_simulated_read_16425007	chr8	+	468	5	ISM	ENSMUSG00000031813.9	ENSMUST00000034272.9	1062	9	13	2450	13	-2450	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATCCAAAGCCCCAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	71995586	71998220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_71995702_71995776_71995876_71996030_71996128_71997867_71997995_71998190
ONT_simulated_read_16425841	chr6	-	204	2	ISM	ENSMUSG00000030243.17	ENSMUST00000111803.9	3389	15	19715	5325	19664	-5325	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGATGGTGTCATACTGC	NA	NA	NA	NA	NA	NA	NA	NA	142313098	142312426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_142312532_142312999
ONT_simulated_read_1642603	chr2	-	1405	6	ISM	ENSMUSG00000040591.19	ENSMUST00000094835.9	1498	8	139846	-149	139788	149	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGCCGTTCAAAGCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	91135179	91108439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_91109303_91109534_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093
ONT_simulated_read_16429032	chr10	+	758	5	NIC	ENSMUSG00000019978.17	novel	3621	16	NA	NA	-6503	-92	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGCTCAAATGACAGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	25360178	25398519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_+_25360279_25364848_25364992_25383674_25383756_25388870_25388980_25398194
ONT_simulated_read_16429373	chr3	-	213	1	Genic_Genomic	ENSMUSG00000103396.2	novel	NA	NA	NA	NA	383	26	mono-exon	FALSE	NA	NA	NA	NA	NA	1132	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAACCACTAATGATACAG	NA	NA	NA	NA	NA	NA	NA	NA	71372612	71372399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr3_-_71372400_71372600
ONT_simulated_read_16430006	chr16	-	578	1	ISM	ENSMUSG00000023143.11	ENSMUST00000147567.2	2230	9	8038	98	8038	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGGGAGGGAAGGAAGTCG	NA	NA	NA	NA	NA	NA	NA	NA	5013828	5013250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_5013200_5013800
ONT_simulated_read_16430464	chr6	-	947	1	ISM	ENSMUSG00000039159.17	ENSMUST00000102993.10	4657	7	89476	2828	89459	744	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGGTTTTTTGTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	30215062	30214115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_30214100_30215100
ONT_simulated_read_164330	chr11	+	1330	12	ISM	ENSMUSG00000037926.16	ENST00000649863.1	4463	14	-5	13634	-5	-13634	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAATGGGGGTGAGTCGC	NA	NA	NA	NA	NA	NA	NA	NA	77239113	77332712	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_77239380_77283875_77283980_77289030_77289096_77298951_77299074_77307243_77307310_77308291_77308358_77312041_77312237_77316126_77316221_77316348_77316478_77320611_77320659_77328451_77328599_77332683
ONT_simulated_read_16433839	chr19	-	429	1	Antisense	novelGene_ENSMUSG00000024661.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3379	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAAAGTGCGTGTTGTTA	NA	NA	NA	NA	NA	NA	NA	NA	9960158	9959729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr19_-_9959700_9960200
ONT_simulated_read_16436233	chr9	+	726	8	ISM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	73	34946	73	-34946	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCAGAAGCAGTCATCAAG	NA	NA	NA	NA	NA	NA	NA	NA	86904139	86924881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832
ONT_simulated_read_16440677	chr13	-	429	4	ISM	ENSMUSG00000016018.5	ENSMUST00000022281.5	3689	27	12868	42459	12868	-42459	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGCAACACTACATATTTC	NA	NA	NA	NA	NA	NA	NA	NA	113051064	113046410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_113046449_113047443_113047569_113049633_113049725_113050889
ONT_simulated_read_16442246	chr8	+	305	3	ISM	ENSMUSG00000031697.13	ENSMUST00000034132.13	1287	7	132	5171	132	-5171	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCTGTACAGTTCAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	86026551	86029529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_86026622_86027737_86027868_86029424
ONT_simulated_read_16442630	chr5	-	1136	9	ISM	ENSMUSG00000004530.13	ENSMUST00000004646.13	3491	11	43008	1996	43008	-1996	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAATCCATAAAGGAAACA	NA	NA	NA	NA	NA	NA	NA	NA	114003811	113982492	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699
ONT_simulated_read_16442830	chr14	-	1088	1	ISM	ENSMUSG00000022048.9	ENSMUST00000022629.9	4520	14	63286	1451	63286	-1451	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATATTGTCACATGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	67042851	67041763	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_67041800_67042900
ONT_simulated_read_16449729	chr4	+	410	2	ISM	ENSMUSG00000037266.19	ENSMUST00000078084.7	1749	5	53	3510	53	-3159	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACCAGCGCAAGTACAGG	NA	NA	NA	NA	NA	NA	NA	NA	134650955	134651472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_134651079_134651185
ONT_simulated_read_16451264	chr12	-	751	7	ISM	ENSMUSG00000020664.11	ENST00000440410.5	1866	13	6437	2949	6437	-2949	internal_fragment	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCGGCGGCCCTTTACTC	NA	NA	NA	NA	NA	NA	NA	NA	31394901	31384719	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_31384783_31385464_31385656_31390278_31390381_31390862_31391007_31391376_31391478_31392742_31392813_31394821
ONT_simulated_read_16451784	chr7	-	341	4	ISM	ENSMUSG00000003873.12	ENSMUST00000033093.10	867	6	854	238	731	-74	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGCAGACAGTGACCATCT	NA	NA	NA	NA	NA	NA	NA	NA	45115468	45111358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45111391_45112822_45112928_45114612_45114749_45115400
ONT_simulated_read_16455288	chr4	-	498	1	ISM	ENSMUSG00000028391.17	ENSMUST00000120095.8	2549	11	16971	787	16971	215	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTATTTTGTCCACACA	NA	NA	NA	NA	NA	NA	NA	NA	62372153	62371655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_62371700_62372200
ONT_simulated_read_16455952	chr17	-	2332	19	ISM	ENSMUSG00000024170.16	ENSMUST00000024987.6	3434	21	643	1791	21	280	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTACCCACAGAGCGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	25334236	25320341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326370_25329200_25329304_25329680_25329829_25330089_25330159_25331953_25332232_25333910
ONT_simulated_read_16458441	chr4	-	866	4	ISM	ENSMUSG00000042558.17	ENSMUST00000102617.5	1672	6	3538	421	3538	-421	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	173	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACTGAAGGTACCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	126211958	126210260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126210659_126211095_126211197_126211512_126211698_126211776
ONT_simulated_read_16461321	chr16	+	801	3	ISM	ENSMUSG00000022507.7	ENSMUST00000023150.7	4072	4	1221	2685	1221	-2685	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCTAGCAGAGGACTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	8649184	8674101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_8649266_8660831_8661108_8673657
ONT_simulated_read_16462049	chr3	-	719	1	ISM	ENSMUSG00000037111.10	ENSMUST00000037141.9	7411	8	39419	5423	39419	-5423	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGTTCCTCTCCTAGTG	NA	NA	NA	NA	NA	NA	NA	NA	51428881	51428162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_51428200_51428900
ONT_simulated_read_16464078	chr18	+	556	4	ISM	ENSMUSG00000024483.20	ENST00000394722.7	2001	11	20386	16576	20386	-16576	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTGCAGATCAAGAGCACAA	NA	NA	NA	NA	NA	NA	NA	NA	36714129	36724534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_36714269_36716664_36716813_36722400_36722635_36724499
ONT_simulated_read_16466619	chr16	-	317	1	NIC	ENSMUSG00000041974.11	novel	3282	20	NA	NA	257065	-246	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTACAAGTTTGATAACATG	NA	NA	NA	NA	NA	NA	NA	NA	15707650	15707333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_15707300_15707600
ONT_simulated_read_1646796	chr2	-	382	1	ISM	ENSMUSG00000039117.17	ENSMUST00000041618.13	4416	15	609	63504	609	-63504	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGGGCGCGGCGGGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	179617830	179617448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_179617400_179617800
ONT_simulated_read_16468994	chr19	+	1246	1	FSM	ENSMUSG00000074811.4	ENSMUST00000099393.4	2666	1	0	1420	0	-1420	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTCAGCCTTGGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	45991946	45993192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_45991900_45993200
ONT_simulated_read_16474029	chr13	+	635	9	ISM	ENSMUSG00000003992.16	ENST00000509053.5	1475	15	209256	382	209250	-283	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACATTAGCATTGCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	91818555	91849004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91848784
ONT_simulated_read_16476255	chr7	-	1245	10	ISM	ENSMUSG00000059146.13	ENST00000355254.6	2938	18	60854	163725	60290	-55405	internal_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCATCCCAGTCATTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	78167241	78005842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_78005964_78100634_78100738_78101638_78101704_78110028_78110326_78110792_78110935_78111333_78111477_78112532_78112691_78127611_78127681_78166476_78166549_78167166
ONT_simulated_read_16478025	chr11	-	1482	2	ISM	ENSMUSG00000042363.15	ENST00000409537.2	3100	3	221	1546	221	-1546	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGCAGAACCACCAGTAGG	NA	NA	NA	NA	NA	NA	NA	NA	20780127	20775123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_20776516_20780037
ONT_simulated_read_16478867	chr1	-	184	1	ISM	ENSMUSG00000026185.9	ENSMUST00000027377.9	6006	4	12391	4378	12391	-4378	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAGGACGTCACTCATTT	NA	NA	NA	NA	NA	NA	NA	NA	72901652	72901468	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_72901500_72901700
ONT_simulated_read_16478947	chr7	-	842	7	ISM	ENSMUSG00000011751.17	ENST00000392025.5	8596	35	8261	62208	8261	-62207	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCTTACTGTACGCTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	27133739	27118020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_27118178_27118412_27118526_27123133_27123250_27126250_27126332_27127608_27127701_27132472_27132647_27133630
ONT_simulated_read_16479922	chr12	-	163	1	ISM	ENSMUSG00000091277.3	ENSMUST00000169406.3	1184	2	3547	868	3547	-868	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGACTGGGGCATTACTT	NA	NA	NA	NA	NA	NA	NA	NA	48603121	48602958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_48603000_48603100
ONT_simulated_read_16480225	chr8	-	796	6	ISM	ENSMUSG00000037363.10	ENSMUST00000079160.8	2126	11	10725	103	9630	-103	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGACACCAAGTTCAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	26076804	26068608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26068821_26069735_26069811_26070331_26070425_26071688_26071803_26075364_26075485_26076622
ONT_simulated_read_16480896	chr15	-	921	1	NIC	ENSMUSG00000045281.6	novel	2144	2	NA	NA	10942	-1039	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGTGGCTTCCAGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	73568412	73567491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_73567500_73568400
ONT_simulated_read_16481981	chr11	+	567	4	FSM	ENSMUSG00000004837.3	ENST00000573099.5	540	4	-27	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACACAAGACCAGAGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	61544090	61562684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_61544251_61551047_61551146_61555010_61555134_61562498
ONT_simulated_read_16482330	chr8	-	812	1	ISM	ENSMUSG00000036840.6	ENST00000356721.3	2102	2	2735	1072	2735	-998	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGGCAATCAAATATTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	87452444	87451632	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_87451600_87452400
ONT_simulated_read_16484492	chr5	-	764	5	ISM	ENSMUSG00000029096.16	ENSMUST00000114233.3	1901	7	11066	509	11066	-509	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCGAGACACCTTCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	35825750	35819411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_35819609_35821306_35821422_35822757_35822791_35823393_35823589_35825526
ONT_simulated_read_1648521	chr5	-	385	1	ISM	ENSMUSG00000032867.9	ENSMUST00000049474.9	5000	11	87262	2853	87262	-2853	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCGTTCCATAGGCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	118206267	118205882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_118205900_118206300
ONT_simulated_read_1648993	chr17	+	1304	7	ISM	ENSMUSG00000024422.15	ENSMUST00000025292.15	3351	20	6	9455	6	-9455	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCGAGAGGAGCTTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	36190716	36194107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_36191011_36192169_36192415_36192521_36192688_36192913_36192971_36193333_36193589_36193736_36193941_36194024
ONT_simulated_read_16490066	chr1	-	286	1	ISM	ENSMUSG00000026155.14	ENSMUST00000027339.14	2289	10	75776	631	63148	40	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTGAGAAACCATCTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	23885622	23885336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_23885300_23885600
ONT_simulated_read_16492275	chr12	+	2312	10	ISM	ENSMUSG00000061911.16	ENST00000648316.1	6115	20	76115	1333	11338	-492	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGCTTGCCCTGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	29901546	29971528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_29901770_29904231_29904354_29905213_29905283_29936121_29936185_29943360_29943445_29945091_29945314_29960765_29960858_29964232_29964337_29969893_29970038_29970339
ONT_simulated_read_16493000	chr9	-	1806	1	NIC	ENSMUSG00000092541.8	novel	889	9	NA	NA	2374	-45005	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGTTACTGGTATAGCT	NA	NA	NA	NA	NA	NA	NA	NA	88336295	88334489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_88334500_88336300
ONT_simulated_read_16493173	chr15	-	1206	7	ISM	ENSMUSG00000005360.15	ENSMUST00000005493.14	4163	10	1926	8237	1571	-8237	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACTTTCAAGTGCCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	8738322	8671844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_8671861_8672383_8672618_8675143_8675437_8679026_8679070_8680332_8680538_8717771_8717910_8738045
ONT_simulated_read_16495710	chr2	-	195	1	ISM	ENSMUSG00000074678.2	ENSMUST00000099203.2	293	2	503	0	503	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTGTGTTCTGCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	152464470	152464275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_152464300_152464500
ONT_simulated_read_1649772	chr18	-	1138	11	ISM	ENSMUSG00000047879.18	ENST00000400266.7	1673	15	17821	0	17804	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAGCTCTAAAGAAAATGA	NA	NA	NA	NA	NA	NA	NA	NA	10012263	9996028	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212
ONT_simulated_read_16499344	chr8	-	136	2	ISM	ENSMUSG00000031545.7	ENST00000547237.1	1016	9	5117	974	5117	-974	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGTTTGGTACCTGCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	23669470	23665556	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_23665653_23669430
ONT_simulated_read_16499599	chr12	-	583	1	ISM	ENSMUSG00000025323.11	ENST00000222584.8	5625	7	63030	2860	62912	166	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTCTGTTTGGAAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	118202105	118201522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_118201500_118202100
ONT_simulated_read_16502281	chr13	-	1945	11	ISM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	11847	1361	7621	-681	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCACAGATGTGAGCTACA	NA	NA	NA	NA	NA	NA	NA	NA	96795597	96786835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378
ONT_simulated_read_16508728	chr15	+	808	1	FSM	ENSMUSG00000116145.2	ENSMUST00000230081.2	1608	1	0	800	0	-800	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTATATAACTACTGTAAAC	NA	NA	NA	NA	NA	NA	NA	NA	76474319	76475127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76474300_76475100
ONT_simulated_read_16509919	chr11	-	468	4	ISM	ENSMUSG00000025572.19	ENST00000591436.5	1009	8	3814	0	3814	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	477	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCCAGCCTGCCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	117661371	117659746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_117659827_117659931_117660109_117660218_117660353_117661294
ONT_simulated_read_16510180	chr10	-	1533	8	ISM	ENSMUSG00000020074.8	ENST00000630771.2	3771	24	38877	36	38831	-36	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATAGCATGCTCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	62589179	62580147	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952
ONT_simulated_read_16514144	chrX	+	1648	9	ISM	ENSMUSG00000036769.15	ENST00000371825.7	4032	20	61	35973	61	-35973	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTGAACGTGCTATAAATAA	NA	NA	NA	NA	NA	NA	NA	NA	23559397	23636192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_23559779_23598556_23598591_23616144_23616220_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128
ONT_simulated_read_1651858	chr1	+	1657	13	ISM	ENSMUSG00000033021.17	ENSMUST00000113584.8	1692	14	170	-1	139	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGCTTGGACTCCTACT	NA	NA	NA	NA	NA	NA	NA	NA	75412756	75419818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ONT_simulated_read_16520680	chr4	-	373	1	ISM	ENSMUSG00000028943.19	ENSMUST00000030785.15	3406	16	30967	537	7685	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAGAAAGATGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	152205697	152205324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_152205300_152205700
ONT_simulated_read_1652221	chr15	+	694	2	FSM	ENSMUSG00000042406.9	ENST00000680446.1	950	2	-27	283	-27	-283	multi-exon	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGTCTCCTCGGCCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	80139723	80141365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_80139887_80140834
ONT_simulated_read_1652432	chr3	-	955	1	ISM	ENSMUSG00000028136.16	ENSMUST00000029783.16	6261	12	81468	2750	60784	-981	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCAACAGGGGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	94408555	94407600	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_94407600_94408600
ONT_simulated_read_16524541	chr4	-	796	1	ISM	ENSMUSG00000042558.17	ENSMUST00000102617.5	1672	6	4861	0	4861	0	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGTCCTGTTCCTGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	126210635	126209839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126209800_126210600
ONT_simulated_read_16524953	chr7	-	1580	7	ISM	ENSMUSG00000000605.10	ENSMUST00000210594.2	2539	12	4081	4922	1700	-4922	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCGGTACTAACCCAGGACA	NA	NA	NA	NA	NA	NA	NA	NA	7298180	7292022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_7292273_7293397_7293585_7294409_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994
ONT_simulated_read_16525533	chr9	+	1933	15	ISM	ENSMUSG00000032212.11	ENSMUST00000216816.2	3755	21	144	8233	28	-8231	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGGAACGCTTACAGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	70450179	70491283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480792_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213
ONT_simulated_read_16526174	chr9	-	1917	6	ISM	ENSMUSG00000032449.14	ENSMUST00000085206.11	5227	7	10937	3044	10937	-2440	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTCCTAGTTCCCTAA	NA	NA	NA	NA	NA	NA	NA	NA	96982273	96960057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_96961293_96962245_96962536_96967109_96967177_96975129_96975231_96979155_96979234_96982127
ONT_simulated_read_16529491	chr17	-	305	3	FSM	ENSMUSG00000039183.7	ENST00000568706.1	374	3	11	58	11	-58	multi-exon	FALSE	canonical	NA	NA	NA	NA	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCTGCAGGTGATAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	25104792	25103159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_25103210_25103374_25103530_25104692
ONT_simulated_read_16529583	chr2	-	653	1	ISM	ENSMUSG00000038312.11	ENSMUST00000040833.5	2290	11	26893	253	26815	94	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATCTCTCTTCCTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	155544502	155543849	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155543800_155544500
ONT_simulated_read_16534726	chr2	-	559	3	ISM	ENSMUSG00000005233.17	ENSMUST00000112320.8	1527	7	6085	257	6085	-256	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACAGCAGACGTGGCACC	NA	NA	NA	NA	NA	NA	NA	NA	69030394	69024495	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_69024890_69027478_69027578_69030328
ONT_simulated_read_16542121	chr14	-	653	1	NIC	ENSMUSG00000022130.11	novel	1594	12	NA	NA	19619	0	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTAATGTCTTTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	118350540	118349887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_118349900_118350500
ONT_simulated_read_16542928	chr11	+	641	6	ISM	ENSMUSG00000000378.16	ENST00000544363.5	1620	8	42	3138	23	-3100	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGAGGCCTGCCGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	6496909	6543622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_6497030_6519963_6520138_6534519_6534604_6535033_6535218_6543066_6543125_6543601
ONT_simulated_read_16544296	chr13	-	464	1	ISM	ENSMUSG00000039114.17	ENSMUST00000224323.2	1779	3	3824	1032	3812	65	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTGAGCGAGCGAGCACA	NA	NA	NA	NA	NA	NA	NA	NA	36910830	36910366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_36910400_36910800
ONT_simulated_read_1654619	chr11	-	2309	12	ISM	ENSMUSG00000061306.17	ENSMUST00000103018.11	4578	17	13364	1501	13330	-1009	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCACCCAGAACCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	120028808	119996286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_119996863_119997259_119997437_119999292_119999317_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682
ONT_simulated_read_16547158	chr13	-	308	3	ISM	ENSMUSG00000021681.9	ENSMUST00000022189.9	3249	14	21277	938	21277	-938	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAGAGCAAAAAACACTGG	NA	NA	NA	NA	NA	NA	NA	NA	95490583	95488128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_95488211_95489254_95489355_95490457
ONT_simulated_read_1655193	chr1	-	498	1	ISM	ENSMUSG00000056050.16	ENSMUST00000194543.4	6330	28	42410	305	42410	-305	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATATCCTTCAAACTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	183108484	183107986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_183108000_183108500
ONT_simulated_read_16552905	chr11	+	2393	8	ISM	ENSMUSG00000020697.17	ENSMUST00000092849.12	4560	20	14577	101	14482	-101	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCCTGTGAGCTAGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	82686510	82693587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82692106
ONT_simulated_read_16555361	chr1	-	968	1	ISM	ENSMUSG00000002459.18	ENSMUST00000002533.15	1778	5	108885	111	108081	-111	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAAGGGTGACTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	4980877	4979909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_4979900_4980900
ONT_simulated_read_16559454	chr19	+	608	1	NIC	ENSMUSG00000024959.15	novel	1452	4	NA	NA	8203	-186	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTCCTCCTCCTTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	6928134	6928742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_+_6928100_6928700
ONT_simulated_read_16559807	chr1	-	1038	4	ISM	ENSMUSG00000016179.12	ENSMUST00000016323.11	2469	13	21491	452	13316	-451	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCGCTCCTGCCTATCTG	NA	NA	NA	NA	NA	NA	NA	NA	193031115	193029105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_193029511_193029639_193029756_193030364_193030793_193031026
ONT_simulated_read_16562174	chr5	+	1996	14	ISM	ENSMUSG00000042605.17	ENST00000389153.10	3873	24	71912	424	71866	93	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGAGGATGTTTTGGACC	NA	NA	NA	NA	NA	NA	NA	NA	121921969	121952580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_121922103_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935849_121940143_121940329_121941010_121941144_121944284_121944339_121948913_121949060_121949447_121949676_121951447_121951617_121952400
ONT_simulated_read_16563043	chr1	+	300	2	ISM	ENSMUSG00000026270.12	ENST00000404753.7	2212	10	8943	214	8943	-214	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGCGGGGCTAGAACTC	NA	NA	NA	NA	NA	NA	NA	NA	92874606	92875441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_92874696_92875230
ONT_simulated_read_16563061	chr4	-	729	3	ISM	ENSMUSG00000028906.18	ENST00000644780.1	4049	17	91310	1275	49643	1066	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACCTGCTATGTCCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	131685099	131680972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_131681505_131682838_131682890_131684953
ONT_simulated_read_16563647	chr16	-	503	1	ISM	ENSMUSG00000060166.7	ENSMUST00000076957.7	4868	11	11802	2079	11676	-1773	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCACGGCCTTTCACTGA	NA	NA	NA	NA	NA	NA	NA	NA	18041198	18040695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_18040700_18041200
ONT_simulated_read_1656393	chr11	-	1069	1	ISM	ENSMUSG00000017677.12	ENSMUST00000017821.12	2476	9	14231	0	14166	0	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTCATGGGTTGCATT	NA	NA	NA	NA	NA	NA	NA	NA	79131266	79130197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_79130200_79131300
ONT_simulated_read_16567355	chr7	-	624	7	ISM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	31700	93	18158	-93	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGCCCTGATCATGTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	143122093	143111536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051
ONT_simulated_read_16568133	chr5	-	638	1	ISM	ENSMUSG00000029406.16	ENST00000280562.9	6615	26	94864	2233	65622	-1176	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGCCCTGCCTGCCACC	NA	NA	NA	NA	NA	NA	NA	NA	124259623	124258985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_124259000_124259600
ONT_simulated_read_16568487	chr18	-	2451	2	ISM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	23217	1075	23217	-1075	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTCGTTAATGTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	24640044	24619091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_24621389_24639890
ONT_simulated_read_16571906	chr3	-	829	1	ISM	ENSMUSG00000028114.17	ENSMUST00000090371.14	7197	7	16254	552	16254	-552	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCAGGCAGAGCATGGG	NA	NA	NA	NA	NA	NA	NA	NA	123163326	123162497	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_123162500_123163300
ONT_simulated_read_1657216	chr8	-	252	2	ISM	ENSMUSG00000040263.17	ENST00000622456.4	1088	10	29825	0	29824	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTCAGATGAAGAGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	122526395	122523724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_122523768_122526186
ONT_simulated_read_16575025	chr11	+	619	5	ISM	ENSMUSG00000002741.10	ENSMUST00000002818.9	2541	7	0	5070	0	-5070	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATGAGTAAAGTGCAGGC	NA	NA	NA	NA	NA	NA	NA	NA	5905692	5912710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_5906005_5909296_5909380_5911187_5911289_5912336_5912442_5912692
ONT_simulated_read_16575935	chr12	-	1194	1	ISM	ENSMUSG00000033713.13	ENSMUST00000046859.12	7705	6	197004	5522	192109	-506	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTCCCAGGCTGAATAC	NA	NA	NA	NA	NA	NA	NA	NA	99163052	99161858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_99161900_99163100
ONT_simulated_read_16578138	chr9	-	729	4	ISM	ENSMUSG00000037742.15	ENST00000610520.5	1735	8	1523	723	1523	-712	internal_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATCAGTGCTGGCTACGC	NA	NA	NA	NA	NA	NA	NA	NA	78387430	78386450	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_78386475_78386559_78386817_78386905_78387057_78387133
ONT_simulated_read_16579535	chr8	-	855	1	ISM	ENSMUSG00000031715.15	ENSMUST00000043359.9	6113	24	38371	1765	38371	-1765	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTGTTATAATACTAATAG	NA	NA	NA	NA	NA	NA	NA	NA	81427755	81426900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_81426900_81427800
ONT_simulated_read_16580455	chr8	-	1168	10	ISM	ENSMUSG00000057672.17	ENST00000342216.8	2882	21	19227	-5	19227	5	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATGCATTTTCAGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	84400340	84396727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_84396998_84397367_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535_84398599_84398784_84398962_84399930_84400023_84400109_84400186_84400259
ONT_simulated_read_16582133	chr2	+	970	4	FSM	ENSMUSG00000027524.10	ENST00000371025.7	1079	4	3	106	0	-106	multi-exon	TRUE	canonical	NA	NA	NA	NA	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAGTCCAAAAGACCCCA	NA	NA	NA	NA	NA	NA	NA	NA	174602591	174623934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_174602812_174603305_174603619_174620380_174620558_174623674
ONT_simulated_read_16582153	chr12	-	1972	1	ISM	ENSMUSG00000041702.8	ENSMUST00000223554.2	8157	12	92498	3140	92370	701	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGATTTTGTTTTCAGTAA	NA	NA	NA	NA	NA	NA	NA	NA	102752167	102750195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_102750200_102752200
ONT_simulated_read_16583230	chr8	-	937	4	ISM	ENSMUSG00000031880.8	ENSMUST00000034351.8	1577	5	464	318	464	-318	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGATGTCTCAGAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	105357495	105355019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_105355361_105356152_105356358_105356457_105356532_105357178
ONT_simulated_read_16583411	chr15	-	807	1	ISM	ENSMUSG00000022404.9	ENSMUST00000023040.9	1724	9	41036	59	41036	-59	mono-exon	FALSE	NA	NA	NA	NA	NA	617	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTGCAAGCTCCAATCACAT	NA	NA	NA	NA	NA	NA	NA	NA	81203977	81203170	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81203200_81204000
ONT_simulated_read_16584872	chr15	-	2143	13	ISM	ENSMUSG00000022246.15	ENSMUST00000227506.2	4732	17	23651	5800	23093	-5800	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCATTTGCAAGTGATAA	NA	NA	NA	NA	NA	NA	NA	NA	10690533	10574854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456
ONT_simulated_read_16587365	chr6	-	820	9	ISM	ENSMUSG00000015112.16	ENSMUST00000015256.15	3067	18	102045	11671	66042	-11668	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGGGACATTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	6115073	6052888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969
ONT_simulated_read_16587829	chr7	-	268	1	NIC	ENSMUSG00000030533.17	novel	3685	23	NA	NA	14341	9	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGGCCCACAGCTCACGCA	NA	NA	NA	NA	NA	NA	NA	NA	79975626	79975358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_79975400_79975600
ONT_simulated_read_16587897	chr14	-	303	2	ISM	ENSMUSG00000063142.16	ENST00000457953.6	3476	28	494044	83	202276	61	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGATCAACCAATATAAATC	NA	NA	NA	NA	NA	NA	NA	NA	23359327	23350027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_23350111_23359107
ONT_simulated_read_165891	chr14	+	2997	14	ISM	ENSMUSG00000033060.17	ENSMUST00000159314.8	5774	27	43471	17031	43471	-17031	internal_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTATTAGACTTTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	102121554	102155092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_102121851_102122726_102123009_102124372_102125093_102126112_102126143_102133902_102134021_102135992_102136136_102137506_102138081_102139499_102139806_102148201_102148317_102149434_102149597_102150675_102150783_102151712_102151774_102153123_102153181_102155066
ONT_simulated_read_16589180	chr12	-	1285	1	ISM	ENSMUSG00000036295.6	ENSMUST00000043884.6	3865	2	31760	1719	31282	-1717	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAGAAAAATAGAAGCTAC	NA	NA	NA	NA	NA	NA	NA	NA	41504670	41503385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_41503400_41504700
ONT_simulated_read_1659052	chr1	-	397	4	ISM	ENSMUSG00000052748.15	ENSMUST00000064771.12	3688	20	48954	744	48954	-744	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCTCTGTCTTCATAAGT	NA	NA	NA	NA	NA	NA	NA	NA	151255252	151244193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133
ONT_simulated_read_16592846	chr6	-	1086	7	ISM	ENSMUSG00000029790.17	ENST00000675563.1	1122	10	27394	-168	27339	-93	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATGACCACAAAAACCAGA	NA	NA	NA	NA	NA	NA	NA	NA	30666336	30655530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_30655850_30656477_30656694_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265
ONT_simulated_read_16593657	chr1	-	1356	6	ISM	ENSMUSG00000026098.14	ENST00000624204.3	2682	11	6819	17486	6819	-9711	internal_fragment	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCCTTGTAGCAGAACATC	NA	NA	NA	NA	NA	NA	NA	NA	53314412	53245947	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53314228
ONT_simulated_read_16595308	chr1	-	450	1	ISM	ENSMUSG00000013698.13	ENSMUST00000013842.12	2501	4	8141	1486	8141	-1486	mono-exon	FALSE	NA	NA	NA	NA	NA	276	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAACCAGTGGGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	172026230	172025780	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_172025800_172026200
ONT_simulated_read_16596774	chr11	-	768	2	ISM	ENSMUSG00000044502.17	ENSMUST00000058060.14	1394	4	4952	116	4794	-116	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCTGGCACCTCCCCAT	NA	NA	NA	NA	NA	NA	NA	NA	31616933	31615296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_31615868_31616736
ONT_simulated_read_16597000	chr2	+	1046	8	ISM	ENSMUSG00000027306.16	ENSMUST00000028771.8	3526	10	12	7351	12	-6267	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAAGGTATGTGGGATAG	NA	NA	NA	NA	NA	NA	NA	NA	119449209	119474374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119465958_119466069_119468928_119469045_119470057_119470216_119474264
ONT_simulated_read_16597155	chr7	-	685	6	ISM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	8289	541	7360	-402	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGCAGTGGTGGTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	45036877	45026417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812
ONT_simulated_read_16601000	chr2	-	432	5	ISM	ENSMUSG00000033808.17	ENSMUST00000090042.12	2874	20	40634	1018	40634	-1018	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATCCACGGGATGAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	120193916	120186810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842
ONT_simulated_read_16601092	chr2	-	1947	5	ISM	ENSMUSG00000026932.15	ENSMUST00000114159.9	6675	6	1695	4301	1695	-4301	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTCTGCCTGTATTTAA	NA	NA	NA	NA	NA	NA	NA	NA	25980494	25949847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25950486_25951584_25951683_25952203_25952310_25954465_25954631_25979554
ONT_simulated_read_16611347	chr15	-	1354	4	ISM	ENSMUSG00000048307.9	ENSMUST00000057486.9	2509	5	861	1027	861	542	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGATTGATCCGATCAGG	NA	NA	NA	NA	NA	NA	NA	NA	36496105	36478840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_36479620_36484126_36484286_36485940_36486274_36496022
ONT_simulated_read_16613004	chr10	-	444	1	ISM	ENSMUSG00000052681.9	ENSMUST00000064667.9	2724	8	30279	1442	30175	1	mono-exon	FALSE	NA	NA	NA	NA	NA	224	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATACAAAATAAGCGCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	117651661	117651217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_117651200_117651700
ONT_simulated_read_1661363	chr1	+	1620	13	ISM	ENSMUSG00000026575.16	ENSMUST00000193683.6	1740	14	425	0	24	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTTGGTTTTATTTCA	NA	NA	NA	NA	NA	NA	NA	NA	164135665	164264869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_164135820_164140421_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
ONT_simulated_read_16614659	chr10	-	425	4	ISM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	13487	5341	13487	-5341	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTCTGGCCCACATCT	NA	NA	NA	NA	NA	NA	NA	NA	62424573	62421370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62421464_62423242_62423317_62423782_62423903_62424435
ONT_simulated_read_16614942	chr11	-	977	1	ISM	ENSMUSG00000011254.17	ENSMUST00000109254.2	2202	7	6894	475	6894	-475	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGTCGAGTCGGGCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	45839121	45838144	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_45838100_45839100
ONT_simulated_read_16616806	chr11	-	1502	8	ISM	ENSMUSG00000020387.16	ENST00000681498.1	1688	10	9981	-1	9981	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	312	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCGCCCCCTGCTGGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	51737528	51711898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_51712024_51715769_51716235_51717385_51717503_51719092_51719261_51721242_51721455_51722079_51722241_51726399_51726558_51737432
ONT_simulated_read_16617195	chr11	-	593	1	ISM	ENSMUSG00000046909.10	ENSMUST00000050207.10	1309	4	4905	0	4905	0	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTTCTTTGCTTAA	NA	NA	NA	NA	NA	NA	NA	NA	80028096	80027503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_80027500_80028100
ONT_simulated_read_1661736	chr6	-	681	4	ISM	ENSMUSG00000029669.15	ENSMUST00000120965.8	2157	7	16569	1176	16569	-1176	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTATTTCAGAAATTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	21835518	21772569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_21772936_21799877_21799986_21806237_21806313_21835386
ONT_simulated_read_16618568	chr5	+	2370	16	ISM	ENSMUSG00000029250.6	ENSMUST00000031167.6	4145	25	344	12803	-5	-12650	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTACTATCCTCAGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	77458337	77484368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_77458478_77460997_77461071_77463696_77463848_77467810_77467924_77468057_77468278_77468801_77468961_77471400_77471566_77473585_77473783_77473894_77474015_77474381_77474569_77478979_77479124_77479796_77479937_77480033_77480146_77482263_77482419_77483480_77483680_77484273
ONT_simulated_read_1661891	chr9	-	718	6	ISM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	15273	14761	15203	10755	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGTGTTTCCCAGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	36663702	36655400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625
ONT_simulated_read_1662288	chr18	+	759	1	FSM	ENSMUSG00000078240.3	ENSMUST00000105038.3	1656	1	598	299	598	-299	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTGGGAAGCGGATTCGA	NA	NA	NA	NA	NA	NA	NA	NA	34870009	34870768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_34870000_34870800
ONT_simulated_read_16623322	chr11	-	954	9	ISM	ENSMUSG00000019373.12	ENSMUST00000019517.10	1646	12	2903	2253	87	-32	internal_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGTATAATAACCCAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	59727761	59710873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_59710945_59712125_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59720972_59721066_59723709_59723760_59723857_59723971_59727716
ONT_simulated_read_16625169	chr9	-	566	1	ISM	ENSMUSG00000033629.7	ENSMUST00000036615.7	2709	11	33179	966	33179	294	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTACTTCATTTCTAGCT	NA	NA	NA	NA	NA	NA	NA	NA	64895796	64895230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_64895200_64895800
ONT_simulated_read_16625908	chr15	-	829	1	NIC	ENSMUSG00000023169.16	novel	6966	16	NA	NA	65149	2	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGGTTTGTTTCCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	96474694	96473865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_96473900_96474700
ONT_simulated_read_16627780	chr4	-	1273	4	ISM	ENSMUSG00000028568.17	ENSMUST00000102739.2	723	6	5751	-875	5751	-758	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	393	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGTGCTTCCTAATTAAC	NA	NA	NA	NA	NA	NA	NA	NA	108683377	108673153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296
ONT_simulated_read_16628596	chr12	-	890	5	ISM	ENSMUSG00000033713.13	ENST00000325117.8	1435	6	47371	0	47371	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAACAAGTCTCTGATTT	NA	NA	NA	NA	NA	NA	NA	NA	99307790	99162529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_99163073_99175719_99175826_99185856_99185923_99257495_99257561_99307680
ONT_simulated_read_16628657	chr6	+	665	5	ISM	ENSMUSG00000030281.17	ENSMUST00000058300.14	2302	17	0	10297	0	-10297	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCCAGGTGCCCGCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	113448387	113449804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_113448749_113449031_113449054_113449191_113449345_113449587_113449651_113449738
ONT_simulated_read_16628696	chrX	-	1322	1	NIC	ENSMUSG00000025059.17	novel	4229	20	NA	NA	72227	-1139	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTGGTTATAACTCATTAA	NA	NA	NA	NA	NA	NA	NA	NA	84748003	84746681	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_84746700_84748000
ONT_simulated_read_16629903	chr2	+	389	1	ISM	ENSMUSG00000027248.14	ENSMUST00000028683.14	2770	13	0	24524	0	-24524	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTCGGCGGGGCTCATGC	NA	NA	NA	NA	NA	NA	NA	NA	121244255	121244644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_121244300_121244600
ONT_simulated_read_1663105	chr11	+	239	2	ISM	ENSMUSG00000059278.10	ENSMUST00000144531.2	671	3	167	424	13	-418	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCGTATGACAGATGGAA	NA	NA	NA	NA	NA	NA	NA	NA	69286639	69287082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_69286799_69287002
ONT_simulated_read_16631245	chr16	-	276	1	ISM	ENSMUSG00000022889.8	ENSMUST00000116584.2	2294	10	17391	500	17391	-500	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACCCCTAGGCCCCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	84515239	84514963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_84515000_84515200
ONT_simulated_read_16632597	chr18	-	540	2	ISM	ENSMUSG00000054008.10	ENSMUST00000169273.2	6070	14	23323	2950	23323	-93	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTCCCTCACTGTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	60823138	60821999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_60822437_60823035
ONT_simulated_read_16633340	chr1	-	547	1	ISM	ENSMUSG00000025956.11	ENSMUST00000114079.9	2030	4	9136	1087	9062	-1080	mono-exon	FALSE	NA	NA	NA	NA	NA	207	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTTCTGCAAGTGGACTT	NA	NA	NA	NA	NA	NA	NA	NA	64647265	64646718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_64646700_64647300
ONT_simulated_read_16635216	chr13	+	1344	12	ISM	ENSMUSG00000057649.7	ENSMUST00000099384.4	2407	16	19	9326	19	-9325	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAAGATGGTAGATGACC	NA	NA	NA	NA	NA	NA	NA	NA	74085975	74099688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090809_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652
ONT_simulated_read_16636295	chr7	+	1012	4	ISM	ENSMUSG00000042606.10	ENSMUST00000037248.10	2766	7	495	1477	495	-1477	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCAAGGTCAGGACCCAG	NA	NA	NA	NA	NA	NA	NA	NA	126461638	126463072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_126461689_126461771_126461893_126461989_126462099_126462340
ONT_simulated_read_16640916	chr7	-	581	1	ISM	ENSMUSG00000040167.17	ENST00000368886.10	4290	5	19848	3	19838	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTTGTTTTTTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	130990961	130990380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_130990400_130991000
ONT_simulated_read_16643477	chr18	-	497	3	ISM	ENSMUSG00000024579.8	ENSMUST00000025472.7	2017	6	8142	985	8142	-985	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGCTCCTTCCAGCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	61832564	61830892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_61831048_61831434_61831576_61832363
ONT_simulated_read_16646551	chr5	-	869	7	ISM	ENSMUSG00000001844.11	ENSMUST00000001900.9	1364	8	0	3893	0	-3885	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCTGACGCTGACGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	143315011	143306136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314920
ONT_simulated_read_16646994	chr5	+	581	1	ISM	ENSMUSG00000029361.19	ENST00000618760.4	5295	30	25375	86377	0	-86114	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAAGGCCGTGGACAGGG	NA	NA	NA	NA	NA	NA	NA	NA	118005183	118005764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_118005200_118005800
ONT_simulated_read_16648253	chr3	-	733	5	ISM	ENSMUSG00000040412.18	ENST00000529753.5	2888	20	68461	4653	68461	-4653	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTGCAGTTCTGGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	108375332	108370290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_108370308_108370785_108370883_108371570_108371752_108372921_108373096_108375068
ONT_simulated_read_16656563	chr2	-	859	7	ISM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	5508	4526	5508	-4526	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGTGAAGTGGCTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	154910909	154905755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747
ONT_simulated_read_16658700	chr1	-	707	1	ISM	ENSMUSG00000048874.16	ENSMUST00000186733.7	7567	16	42064	28472	31739	-28469	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCTATGGTGAGGACAC	NA	NA	NA	NA	NA	NA	NA	NA	30870598	30869891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_30869900_30870600
ONT_simulated_read_16659489	chr14	-	512	4	ISM	ENSMUSG00000021792.16	ENSMUST00000022317.15	1537	6	9602	3992	9602	-3992	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAGGATCTGGAAAACAGG	NA	NA	NA	NA	NA	NA	NA	NA	40726130	40719688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_40719835_40720800_40720942_40724392_40724485_40725997
ONT_simulated_read_16659503	chr5	+	1219	8	ISM	ENSMUSG00000033773.15	ENSMUST00000112651.8	2321	13	39	41389	0	-22473	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTATATGGCCAGAACCA	NA	NA	NA	NA	NA	NA	NA	NA	107745600	107768315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_107745727_107746387_107746434_107749596_107749726_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687
ONT_simulated_read_16662499	chr8	+	416	1	FSM	ENSMUSG00000094530.3	ENSMUST00000180210.3	597	1	0	181	0	-181	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCGACAGATAACAATAAATG	NA	NA	NA	NA	NA	NA	NA	NA	129979478	129979894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_129979500_129979900
ONT_simulated_read_16663842	chr15	+	672	8	ISM	ENSMUSG00000056851.15	ENSMUST00000230114.2	1086	14	0	12485	0	11276	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGAGGGGATGTTCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	102381768	102394475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382
ONT_simulated_read_16663935	chr4	+	573	5	ISM	ENSMUSG00000029063.17	ENSMUST00000030939.14	2946	12	0	5770	0	-5770	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGAAGAAGAAGTTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	155646834	155669684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155646913_155661449_155661655_155663767_155663852_155668593_155668724_155669608
ONT_simulated_read_16664540	chrX	-	2068	1	ISM	ENSMUSG00000042225.4	ENSMUST00000041317.3	5437	6	111102	2413	111102	-2413	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCTAGGAAAAGAGAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	141638622	141636554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_141636600_141638600
ONT_simulated_read_16666051	chr8	-	287	1	ISM	ENSMUSG00000005150.17	ENSMUST00000093357.12	1238	9	5425	0	5425	0	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	NA	NA	NA	NA	NA	NA	NA	85801950	85801663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85801700_85802000
ONT_simulated_read_16666173	chr15	+	1262	6	ISM	ENSMUSG00000022436.17	ENSMUST00000001226.11	2375	18	6515	0	6515	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGTAACTGGCCAAACG	NA	NA	NA	NA	NA	NA	NA	NA	78790617	78796247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78795538
ONT_simulated_read_16666664	chr10	+	691	6	ISM	ENSMUSG00000020260.10	ENSMUST00000020493.9	2290	9	3230	2320	3230	-2320	internal_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGACGGAGGCGTCGCC	NA	NA	NA	NA	NA	NA	NA	NA	77098281	77103089	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_77098416_77099098_77099210_77100789_77100857_77101669_77101796_77102746_77102928_77103017
ONT_simulated_read_16667743	chr15	+	1802	13	ISM	ENSMUSG00000022364.15	ENST00000287380.6	2959	20	3704	11128	3704	-11128	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAATTAGAGAAGTTTATC	NA	NA	NA	NA	NA	NA	NA	NA	57779408	57816189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151
ONT_simulated_read_16668316	chr15	-	187	3	ISM	ENSMUSG00000022323.12	ENSMUST00000022946.6	1004	6	8575	454	8575	-454	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGCCATGCTGATGTTG	NA	NA	NA	NA	NA	NA	NA	NA	34486826	34484620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_34484682_34485745_34485802_34486756
ONT_simulated_read_1666945	chr11	-	1577	1	ISM	ENSMUSG00000034282.4	ENSMUST00000037007.4	6384	22	13886	2056	13838	-1836	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGGAGGAGGAGGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	116115017	116113440	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_116113400_116115000
ONT_simulated_read_1667153	chr10	-	603	4	ISM	ENSMUSG00000000901.18	ENSMUST00000120281.8	1793	9	5240	2419	5240	-2419	internal_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGGCCCTGCACCACTCT	NA	NA	NA	NA	NA	NA	NA	NA	75763069	75761474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_75761512_75762244_75762462_75762581_75762824_75762962
ONT_simulated_read_16674179	chr12	-	165	1	NIC	ENSMUSG00000044573.17	novel	2754	6	NA	NA	312	0	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGACCACCCTGTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	30954830	30954665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_30954700_30954800
ONT_simulated_read_16674830	chr9	-	288	1	NIC	ENSMUSG00000111497.2	novel	2988	17	NA	NA	16510	-7686	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACCAGCTGGAGCTCAAG	NA	NA	NA	NA	NA	NA	NA	NA	20986783	20986495	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_20986500_20986800
ONT_simulated_read_16678653	chr7	+	1128	10	ISM	ENSMUSG00000061079.15	ENST00000396597.7	1954	15	24	11036	0	-11036	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGACTGCTGGGGTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	109660916	109682578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_109660983_109668690_109668810_109670578_109670663_109671325_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397
ONT_simulated_read_16679817	chrX	-	576	3	ISM	ENSMUSG00000031310.17	ENSMUST00000120201.8	1859	7	3348	374	3337	-346	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTGTGGGGCTTACATC	NA	NA	NA	NA	NA	NA	NA	NA	100460067	100458909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_100459013_100459366_100459545_100459772
ONT_simulated_read_16680105	chr13	-	756	1	ISM	ENSMUSG00000045410.19	ENSMUST00000091848.7	3463	10	15890	1779	9515	727	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACTGTTAGTTGGAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	4643283	4642527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_4642500_4643300
ONT_simulated_read_1668116	chr15	-	1094	3	ISM	ENSMUSG00000022994.10	ENSMUST00000228566.2	3707	21	0	8287	0	-8287	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATAAGATCTACATCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	98502612	98498311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_98498398_98498791_98498942_98501754
ONT_simulated_read_16682128	chr1	-	1123	1	ISM	ENSMUSG00000056536.15	ENSMUST00000070699.15	6528	29	136910	2554	136910	-2550	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTTAAGTGCTTGGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	105449823	105448700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_105448700_105449800
ONT_simulated_read_16683115	chr1	+	261	2	ISM	ENSMUSG00000026043.19	ENSMUST00000087883.13	5564	51	135	28109	135	-28109	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCGATGACATAATCTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	45350832	45360757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_45350993_45360656
ONT_simulated_read_16688236	chrX	+	631	6	ISM	ENSMUSG00000000787.13	ENST00000441189.4	4139	16	6260	4210	6260	-4210	internal_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCTCAGATACGAAGAATAG	NA	NA	NA	NA	NA	NA	NA	NA	13153522	13155681	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13155018_13155180_13155633
ONT_simulated_read_16688867	chr7	-	1095	2	ISM	ENSMUSG00000030879.11	ENSMUST00000124482.3	7300	3	598	5896	495	578	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACCATGCTTACCACCAC	NA	NA	NA	NA	NA	NA	NA	NA	105459708	105458308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105459352_105459656
ONT_simulated_read_16689498	chrX	-	910	7	ISM	ENSMUSG00000031283.17	ENSMUST00000063029.13	3550	11	64016	2198	42379	-57	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAGACACAACAGCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	142109079	142070867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_142070993_142074090_142074181_142077169_142077338_142082864_142083060_142086344_142086514_142094077_142094146_142108984
ONT_simulated_read_16689972	chr2	+	1381	9	FSM	ENSMUSG00000015094.17	ENST00000371601.5	1407	9	26	0	-2	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGCTTCTGGGTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	25293180	25299503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_25293378_25296226_25296374_25297607_25297749_25297855_25298027_25298125_25298193_25298271_25298360_25298618_25298699_25298916_25299014_25299110
ONT_simulated_read_1669094	chr1	-	466	1	ISM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	45289	1726	45289	-1726	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCATTTTACACTTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	189374994	189374528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_189374500_189375000
ONT_simulated_read_16692283	chr2	+	557	5	ISM	ENSMUSG00000027168.22	ENST00000638965.1	791	6	15	2672	15	-252	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAACACGTACAGTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	105499279	105523130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_105499395_105521909_105522069_105522538_105522622_105522814_105522966_105523081
ONT_simulated_read_16692549	chr12	-	1073	1	FSM	ENSMUSG00000093847.3	ENSMUST00000177747.2	435	1	0	-638	0	-287	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTTAGCTTCTGTATTG	NA	NA	NA	NA	NA	NA	NA	NA	88288251	88287178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_88287200_88288300
ONT_simulated_read_16694685	chr4	-	218	1	NIC	ENSMUSG00000054428.13	novel	462	2	NA	NA	2664	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTTGGTCTGTGTGCTAC	NA	NA	NA	NA	NA	NA	NA	NA	132258135	132257917	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_132257900_132258100
ONT_simulated_read_16695777	chr18	-	343	1	NIC	ENSMUSG00000033184.15	novel	1436	4	NA	NA	8656	-284	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGACACCTTTTTTATTTG	NA	NA	NA	NA	NA	NA	NA	NA	46721725	46721382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_46721400_46721700
ONT_simulated_read_16696059	chr13	+	666	1	FSM	ENSMUSG00000038415.11	ENSMUST00000042118.11	4843	1	0	4177	0	-4177	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCACCTTGCACTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	31740116	31740782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_31740100_31740800
ONT_simulated_read_16697395	chr5	-	440	4	ISM	ENSMUSG00000040473.16	ENST00000497910.5	2292	19	68654	50	68654	-50	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCAAGCCCTTCAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	5639196	5634700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_5634849_5636355_5636433_5637140_5637279_5639119
ONT_simulated_read_16697646	chr11	-	754	4	ISM	ENSMUSG00000039055.5	ENST00000393271.6	2138	8	3226	261	3226	-261	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATCCCAGTTGACCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	94538552	94536082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453
ONT_simulated_read_16698404	chr17	-	1036	1	ISM	ENSMUSG00000007021.6	ENSMUST00000007236.5	1965	4	3524	304	3395	-289	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATAGCAGACTACTCATA	NA	NA	NA	NA	NA	NA	NA	NA	24905405	24904369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24904400_24905400
ONT_simulated_read_16703661	chr7	-	247	1	ISM	ENSMUSG00000030737.18	ENSMUST00000032985.11	4381	14	51238	2052	35707	-90	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGCCTTGCTTGCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	99309309	99309062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_99309100_99309300
ONT_simulated_read_1670411	chr2	-	3435	2	ISM	ENSMUSG00000068134.14	ENSMUST00000089207.13	4127	4	17093	411	17027	-411	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGAAGAGATTCTGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	149961535	149956736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_149960121_149961484
ONT_simulated_read_16705679	chr2	-	975	6	ISM	ENSMUSG00000049252.18	ENSMUST00000167270.5	10071	63	290677	647910	290677	604816	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATCTGTAAACCTGGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	41388413	41339314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_41339339_41348311_41348435_41358833_41359024_41360953_41361174_41366646_41366828_41388176
ONT_simulated_read_1670659	chr5	-	562	1	NIC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	-916	-1254	mono-exon	FALSE	NA	NA	NA	NA	NA	2726	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATCCCCCCTGACCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	125465329	125464767	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_125464800_125465300
ONT_simulated_read_16706864	chr17	+	462	4	ISM	ENSMUSG00000041199.4	ENSMUST00000047273.3	1745	6	15	2606	15	-1925	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAACTATGCCATTGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	25946705	25947832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_25946822_25947176_25947366_25947496_25947621_25947799
ONT_simulated_read_16709498	chr4	-	795	5	ISM	ENSMUSG00000028622.12	ENSMUST00000030365.6	1498	7	2367	101	2367	-101	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGTCCTGGGACGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	106921698	106913171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_106913302_106914568_106914773_106917679_106917838_106919079_106919266_106921581
ONT_simulated_read_16710644	chr14	-	428	3	ISM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	47552	16814	47552	-16814	internal_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGTACTACAGCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	45720023	45713065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_45713133_45713344_45713571_45719888
ONT_simulated_read_16710748	chr7	-	244	1	ISM	ENSMUSG00000030407.3	ENSMUST00000032566.3	2710	7	7995	1351	7995	-1351	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTACAACCATGTGAAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	18875221	18874977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_18875000_18875200
ONT_simulated_read_16713974	chr5	-	685	5	ISM	ENSMUSG00000029406.16	ENSMUST00000161938.8	5866	25	61718	3404	61718	-3404	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGTCACCCTGACTGGG	NA	NA	NA	NA	NA	NA	NA	NA	124263527	124261213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_124261305_124261605_124261723_124262001_124262151_124262860_124263023_124263361
ONT_simulated_read_16714124	chr7	-	589	3	ISM	ENSMUSG00000003420.9	ENSMUST00000210642.2	1602	7	497	9049	497	-9049	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCTCAATGGTGAGGAGT	NA	NA	NA	NA	NA	NA	NA	NA	44752672	44751536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44751610_44751825_44752096_44752426
ONT_simulated_read_16714223	chr19	-	684	6	ISM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	1077	13656	1077	-13656	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGTCAGCATCAGAGACT	NA	NA	NA	NA	NA	NA	NA	NA	5344406	5337615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326
ONT_simulated_read_16716666	chr6	+	951	1	ISM	ENSMUSG00000073096.12	ENSMUST00000114545.8	2913	3	14975	1	14966	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGTCTTGGTCATGGTA	NA	NA	NA	NA	NA	NA	NA	NA	48546704	48547655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_48546700_48547700
ONT_simulated_read_16717370	chr7	+	732	4	ISM	ENSMUSG00000011096.18	ENSMUST00000107882.8	1160	5	2942	50	2564	-50	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCGGCTCAATACCAGCG	NA	NA	NA	NA	NA	NA	NA	NA	44501994	44504110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_44502384_44503203_44503282_44503362_44503533_44504015
ONT_simulated_read_16718480	chr18	-	1260	1	NIC	ENSMUSG00000043079.18	novel	5060	3	NA	NA	13616	-1240	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCACTGCCATGCTGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	60729561	60728301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_60728300_60729600
ONT_simulated_read_16719806	chr11	+	505	2	ISM	ENSMUSG00000002064.11	ENSMUST00000002133.9	1268	3	0	4401	0	-4401	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGTGTGAAAGGGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	78136571	78141921	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_78136997_78141841
ONT_simulated_read_16721355	chr6	-	1431	1	ISM	ENSMUSG00000037788.15	ENSMUST00000114297.5	2919	5	70493	971	70470	-971	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGCTGACATTGTAAATG	NA	NA	NA	NA	NA	NA	NA	NA	57731651	57730220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_57730200_57731700
ONT_simulated_read_167214	chr2	-	2048	2	ISM	ENSMUSG00000007659.19	ENST00000307677.5	2553	3	553	217	234	-196	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTGCGCGTGCCCGTG	NA	NA	NA	NA	NA	NA	NA	NA	152671996	152622804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_152624203_152671346
ONT_simulated_read_16721959	chr6	+	708	1	FSM	ENSMUSG00000040078.10	ENSMUST00000160012.2	480	1	0	-228	0	228	mono-exon	FALSE	NA	NA	NA	NA	NA	267	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGCTAAGGCAGTATCCT	NA	NA	NA	NA	NA	NA	NA	NA	85820961	85821669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_85821000_85821700
ONT_simulated_read_16724790	chr2	+	557	5	ISM	ENSMUSG00000074797.12	ENSMUST00000103193.5	1390	8	0	7342	0	-7342	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTATCCCTGTTGTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	130509529	130516192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_130509856_130513320_130513379_130513475_130513541_130513979_130514054_130516158
ONT_simulated_read_16727258	chr2	-	2772	6	ISM	ENSMUSG00000026723.11	ENSMUST00000124488.7	3788	11	22538	574	22538	-574	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGCTACTCCGTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	13526941	13514398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888
ONT_simulated_read_16730622	chr2	+	1688	13	ISM	ENSMUSG00000040084.10	ENSMUST00000038341.8	3668	23	1907	14661	1907	-14661	internal_fragment	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAATGAGGATGTGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	118430598	118457411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333
ONT_simulated_read_16731481	chr10	-	1188	6	ISM	ENSMUSG00000013833.16	ENSMUST00000165684.8	2950	15	10471	108	9206	-108	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCGGGAGGCAGAGGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	79734261	79730876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_79731245_79731460_79731545_79732181_79732399_79732592_79732786_79733398_79733533_79734069
ONT_simulated_read_16731885	chr2	-	1638	1	ISM	ENSMUSG00000049922.9	ENSMUST00000067631.7	3139	2	5044	349	5044	-346	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGGAGCACTAGCCCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	92285095	92283457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_92283500_92285100
ONT_simulated_read_16737157	chr10	+	1161	9	ISM	ENSMUSG00000019907.11	ENSMUST00000219263.2	3355	25	207	34299	0	-34299	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCAGGCAGCCCCTGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	107998260	108078913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866
ONT_simulated_read_16739381	chr2	-	227	1	FSM	ENSMUSG00000069188.6	ENSMUST00000101199.3	208	1	0	-19	0	19	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGGATATCCATTACTTA	NA	NA	NA	NA	NA	NA	NA	NA	4964563	4964336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_4964300_4964600
ONT_simulated_read_16741315	chr8	-	1596	1	ISM	ENSMUSG00000044600.15	ENSMUST00000167290.8	2892	5	3280	1025	3241	-1025	mono-exon	FALSE	NA	NA	NA	NA	NA	532	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGTCTAAGTTCAGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	73321652	73320056	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_73320100_73321700
ONT_simulated_read_16744378	chr12	-	2516	18	ISM	ENSMUSG00000015143.16	ENST00000684639.1	3474	21	63183	546	63099	219	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTACGTTAAAAAAAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	80243766	80214876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_80215255_80215631_80215791_80216956_80217023_80217459_80217541_80218502_80218650_80219736_80219917_80220853_80220989_80221233_80221417_80222929_80223071_80223961_80224071_80225075_80225227_80228134_80228283_80230166_80230398_80231580_80231674_80239141_80239228_80240409_80240492_80243168_80243248_80243699
ONT_simulated_read_16745514	chr11	-	585	5	ISM	ENSMUSG00000020917.18	ENSMUST00000165111.8	4162	27	25261	16210	25261	8011	internal_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTCACCAAGCCAGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	100389163	100383393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010
ONT_simulated_read_16748847	chr7	+	1973	16	ISM	ENSMUSG00000025133.10	ENSMUST00000026126.10	3240	23	20823	275	44	-275	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCGAGGGCACCATCCCC	NA	NA	NA	NA	NA	NA	NA	NA	97150985	97190326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
ONT_simulated_read_16751533	chr4	-	1042	10	ISM	ENSMUSG00000028678.14	ENSMUST00000106436.8	2378	19	5023	5303	5023	-5303	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGAACGAGGGGCCGACA	NA	NA	NA	NA	NA	NA	NA	NA	117030918	117022642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_117022760_117023508_117023652_117024077_117024170_117024245_117024310_117024490_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798
ONT_simulated_read_16753581	chr17	+	673	8	ISM	ENSMUSG00000041057.11	ENSMUST00000047086.10	3450	18	26490	1429	26490	-1429	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAATTAAATGGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	71949699	71964597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
ONT_simulated_read_16753713	chr17	+	448	3	ISM	ENSMUSG00000067629.14	ENST00000449372.7	3919	18	20862	5668	9420	-2973	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTCCCAGGAAGAACAGAC	NA	NA	NA	NA	NA	NA	NA	NA	27181279	27183887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_27181473_27181887_27182062_27183806
ONT_simulated_read_16754373	chr1	-	295	2	ISM	ENSMUSG00000026155.14	ENSMUST00000129254.8	1365	10	61146	253	61146	-253	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCCATGAACCTCAGTAG	NA	NA	NA	NA	NA	NA	NA	NA	23887624	23885629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_23885645_23887344
ONT_simulated_read_16755101	chr1	-	1268	7	ISM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	20876	778	20728	509	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	193	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGAAACCATTGCAAAATT	NA	NA	NA	NA	NA	NA	NA	NA	177603201	177591305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146
ONT_simulated_read_16756064	chr2	-	1191	11	ISM	ENSMUSG00000027244.15	ENST00000530500.5	1881	15	21771	136	21738	-136	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTAGCCTTCATGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	91519126	91506662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985
ONT_simulated_read_16756277	chr2	-	309	1	ISM	ENSMUSG00000026966.7	ENSMUST00000028342.7	862	3	861	208	861	-208	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCTCTCTCTGAAGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	25161567	25161258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25161300_25161600
ONT_simulated_read_16757038	chr4	-	584	1	NIC	ENSMUSG00000028607.17	novel	2372	5	NA	NA	18936	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGTTCCTTTTTCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	107761761	107761177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_107761200_107761800
ONT_simulated_read_16757144	chr11	-	1554	6	ISM	ENSMUSG00000042302.15	ENST00000405015.7	3771	22	139206	82868	139172	-82868	internal_fragment	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGGAGCTGAAAGAAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	22096666	22039648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_22039669_22045317_22046200_22050421_22050471_22051051_22051231_22087837_22088058_22096462
ONT_simulated_read_16761199	chr5	-	572	5	ISM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	431	5142	431	-5142	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTCACTCAGCGCCTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	129864082	129847763	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_129847805_129848539_129848697_129856085_129856313_129856425_129856509_129864018
ONT_simulated_read_16761955	chr15	-	1408	1	NIC	ENSMUSG00000022440.10	novel	2402	3	NA	NA	4193	-644	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTAGAAGACTCCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	78409599	78408191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_78408200_78409600
ONT_simulated_read_16762103	chr11	-	249	1	NIC	ENSMUSG00000059534.9	novel	536	2	NA	NA	2110	0	mono-exon	FALSE	NA	NA	NA	NA	NA	643	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCTTTTGCACGAGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	4652221	4651972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_4652000_4652200
ONT_simulated_read_16765565	chr17	+	2568	11	ISM	ENSMUSG00000038545.14	ENSMUST00000043464.14	5530	26	1086	6612	1086	-6612	internal_fragment	TRUE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGGCTCCCACTTCATCA	NA	NA	NA	NA	NA	NA	NA	NA	46962348	46968678	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_46962945_46963385_46963538_46963650_46964125_46964675_46964815_46964911_46965109_46965359_46965586_46966440_46966679_46966769_46966876_46967919_46968148_46968369_46968461_46968557
ONT_simulated_read_16766365	chr8	-	2295	1	ISM	ENSMUSG00000031652.12	ENSMUST00000034074.8	6469	7	40223	1602	40156	894	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGAGTGCCTCTGCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	87571663	87569368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_87569400_87571700
ONT_simulated_read_16767618	chr19	+	852	8	ISM	ENSMUSG00000024993.16	ENSMUST00000025957.9	2307	9	0	3602	0	-3602	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTGTGCAATCTGCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	60800048	60821063	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021
ONT_simulated_read_16768641	chr17	-	1668	7	ISM	ENSMUSG00000055660.10	ENSMUST00000171284.3	2560	8	1612	248	-396	-85	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGTTGGATGAGTTGG	NA	NA	NA	NA	NA	NA	NA	NA	95055835	95034760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95055044
ONT_simulated_read_16773457	chr8	+	757	1	FSM	ENSMUSG00000031731.17	ENSMUST00000179104.2	1096	1	-423	762	-423	-762	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAACTGAGAGAGAACAACA	NA	NA	NA	NA	NA	NA	NA	NA	110589316	110590073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_110589300_110590100
ONT_simulated_read_16773489	chr7	+	518	4	ISM	ENSMUSG00000002957.12	ENST00000332231.9	3270	22	20	32859	20	-32859	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAATCCTACGTTTATGGG	NA	NA	NA	NA	NA	NA	NA	NA	141142120	141178701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_141142340_141168198_141168268_141177385_141177529_141178614
ONT_simulated_read_16774873	chr1	-	435	4	ISM	ENSMUSG00000010609.16	ENST00000678320.1	1805	9	10544	1919	10544	-1490	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTTCTACAGCGTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	180062775	180056499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_180056527_180056950_180057053_180057406_180057491_180062553
ONT_simulated_read_1677521	chr8	-	312	3	ISM	ENSMUSG00000052934.15	ENSMUST00000059018.14	4358	9	22477	4942	22477	-4942	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTGGAGAACCTCCGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	122283068	122281120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_122281191_122281944_122282099_122282980
ONT_simulated_read_16776597	chrX	-	646	1	ISM	ENSMUSG00000016382.16	ENSMUST00000114059.10	3149	16	88283	600	40054	-586	mono-exon	FALSE	NA	NA	NA	NA	NA	224	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCTTTTAGTCTTAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	74830505	74829859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_74829900_74830500
ONT_simulated_read_16780895	chr16	+	2279	14	ISM	ENSMUSG00000040785.20	ENSMUST00000232660.2	8298	45	60358	877	57927	-754	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATTAGTATTGGCTA	NA	NA	NA	NA	NA	NA	NA	NA	94244124	94269325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_94244351_94245343_94245410_94248857_94249008_94251878_94252019_94253822_94253892_94255285_94255383_94257569_94257671_94258179_94258271_94258789_94258892_94260620_94260962_94263080_94263208_94263354_94263490_94267761_94267855_94268784
ONT_simulated_read_16782524	chr3	-	1409	7	ISM	ENSMUSG00000027715.10	ENSMUST00000029270.10	2965	8	1170	1044	571	69	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	468	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTACAGTGGGGAGTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	36625129	36620057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_36620432_36620689_36620824_36621148_36621263_36621872_36622081_36622736_36622961_36623128_36623239_36624884
ONT_simulated_read_16784540	chr5	+	421	2	ISM	ENSMUSG00000090326.3	ENST00000357504.7	2264	9	1	69752	0	-69752	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATGGGACTGACCCTCAA	NA	NA	NA	NA	NA	NA	NA	NA	62969016	62975898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_62969421_62975881
ONT_simulated_read_16786550	chr13	-	500	1	ISM	ENSMUSG00000021765.10	ENSMUST00000223640.3	2833	6	5167	995	4802	57	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATAAGTGTATGCTTAT	NA	NA	NA	NA	NA	NA	NA	NA	114590320	114589820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_114589800_114590300
ONT_simulated_read_1678856	chr10	+	672	6	ISM	ENSMUSG00000075706.12	ENSMUST00000105372.9	959	7	0	373	0	-328	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGCGCTATGGTCCCAT	NA	NA	NA	NA	NA	NA	NA	NA	79889321	79891900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873
ONT_simulated_read_16788894	chr18	-	989	9	ISM	ENSMUSG00000024493.10	ENST00000674398.1	3424	30	5310	32987	5310	-32987	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATGTGAGTGTTTACAGG	NA	NA	NA	NA	NA	NA	NA	NA	42379138	42368546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004
ONT_simulated_read_16788924	chr11	+	640	7	ISM	ENSMUSG00000020901.14	ENSMUST00000021283.8	4370	19	39	7336	19	-5737	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGCTGTGGCAGACAAGC	NA	NA	NA	NA	NA	NA	NA	NA	68322985	68381339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_68323089_68364620_68364737_68366228_68366330_68367130_68367200_68368269_68368409_68377376_68377447_68381297
ONT_simulated_read_16789051	chrX	+	1206	7	ISM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	14	2685	14	-2685	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTGCCATATACATTTG	NA	NA	NA	NA	NA	NA	NA	NA	73348617	73352783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681
ONT_simulated_read_16789724	chr11	-	497	4	ISM	ENSMUSG00000017288.16	ENSMUST00000094015.11	2645	21	116563	102	116462	-102	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGCCAGAGTCCTGAACAG	NA	NA	NA	NA	NA	NA	NA	NA	75953880	75937224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_75937409_75937890_75937996_75939265_75939404_75953810
ONT_simulated_read_16791326	chr16	-	1126	8	ISM	ENSMUSG00000012114.18	ENST00000382974.6	2183	16	37321	3224	37321	-3224	internal_fragment	TRUE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTGTCCAAGTACATCGA	NA	NA	NA	NA	NA	NA	NA	NA	17503369	17473071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17473146_17473307_17473436_17473541_17473670_17489408_17489538_17490932_17491263_17492268_17492523_17501022_17501053_17503316
ONT_simulated_read_16800	chr15	+	2578	11	FSM	ENSMUSG00000022456.19	ENST00000396426.7	2586	11	8	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCTGGTCTTTGTCTTAT	NA	NA	NA	NA	NA	NA	NA	NA	82159439	82178775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_82159688_82163615_82163808_82167259_82167389_82167877_82167960_82168572_82168711_82169987_82170106_82170637_82170734_82173395_82173496_82174604_82174657_82174938_82175033_82177446
ONT_simulated_read_16800230	chr5	-	689	5	ISM	ENSMUSG00000029434.13	ENST00000267199.9	1816	13	7911	5506	7911	-5506	internal_fragment	FALSE	canonical	NA	NA	NA	NA	1997	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTGGGGCCATTCTACAGT	NA	NA	NA	NA	NA	NA	NA	NA	123703138	123674593	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_123674664_123685064_123685192_123696676_123696877_123701488_123701664_123703021
ONT_simulated_read_16802722	chr2	-	1201	1	ISM	ENSMUSG00000009621.19	ENSMUST00000056176.8	5221	28	162840	889	162840	-889	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGTCCCCACTGGAGT	NA	NA	NA	NA	NA	NA	NA	NA	27154205	27153004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_27153000_27154200
ONT_simulated_read_16803611	chr16	-	1109	4	ISM	ENSMUSG00000022680.15	ENSMUST00000023361.12	4228	24	64950	1007	64844	5	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTGTTGCTGTTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	13656041	13652018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_13652711_13654249_13654480_13654906_13655012_13655959
ONT_simulated_read_1680372	chr12	-	1373	1	ISM	ENSMUSG00000021266.17	ENSMUST00000161410.8	2764	10	31796	0	21507	0	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	108827328	108825955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_108826000_108827300
ONT_simulated_read_16803793	chr10	-	2076	1	ISM	ENSMUSG00000035397.9	ENSMUST00000038558.9	2674	2	8122	0	8122	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCCCTTCTGTCTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	80405033	80402957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80403000_80405000
ONT_simulated_read_168062	chr8	+	366	3	ISM	ENSMUSG00000031543.19	ENSMUST00000033947.15	1030	4	988	325	988	62	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTTCTGAGCTCCCCG	NA	NA	NA	NA	NA	NA	NA	NA	23630108	23638385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_23630245_23631179_23631321_23638296
ONT_simulated_read_16806369	chr16	-	1355	1	ISM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	93737	0	73228	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTGTTGTATAAAACAG	NA	NA	NA	NA	NA	NA	NA	NA	20151407	20150052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_20150100_20151400
ONT_simulated_read_16807941	chr2	-	1863	7	ISM	ENSMUSG00000057147.14	ENSMUST00000102542.10	2734	9	10061	631	9984	-407	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACATTGGTAGATCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	114475384	114347531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_114348774_114350192_114350281_114353524_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201
ONT_simulated_read_16810099	chr6	-	808	7	ISM	ENSMUSG00000015112.16	ENSMUST00000015256.15	3067	18	85397	67960	49394	43231	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGGCACCGAGCGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	6131721	6109177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628
ONT_simulated_read_1681419	chr1	+	1094	6	ISM	ENSMUSG00000026150.15	ENSMUST00000073025.12	1706	8	4353	281	43	-244	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGATAGATGCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	82706992	82729827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_82707158_82708833_82709004_82713136_82713229_82724803_82724864_82728240_82728326_82729305
ONT_simulated_read_16815149	chr5	-	392	3	ISM	ENSMUSG00000029428.14	ENSMUST00000100680.10	2769	10	17464	1695	17464	-1695	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCTAGCGCCGAGCACTG	NA	NA	NA	NA	NA	NA	NA	NA	129068135	129063321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_129063495_129065865_129065977_129068027
ONT_simulated_read_16818516	chr7	-	1335	5	ISM	ENSMUSG00000030602.14	ENSMUST00000108283.8	2899	10	28321	4165	-1617	-4158	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCGGCGCCCTCACGGATA	NA	NA	NA	NA	NA	NA	NA	NA	28269289	28262408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28262507_28263630_28264072_28264237_28264697_28267458_28267724_28269217
ONT_simulated_read_16819065	chr11	-	912	1	ISM	ENSMUSG00000034187.19	ENSMUST00000103075.11	3766	21	130818	545	130818	-545	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAAGAGGAACTCAGCGAG	NA	NA	NA	NA	NA	NA	NA	NA	103714064	103713152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_103713200_103714100
ONT_simulated_read_16819089	chr1	-	1822	10	ISM	ENSMUSG00000026341.17	ENSMUST00000178474.8	2565	12	19167	424	18996	-424	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	176	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTTCTTATTAAAACAATAA	NA	NA	NA	NA	NA	NA	NA	NA	125344117	125321066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992
ONT_simulated_read_16819261	chr9	-	170	1	FSM	ENSMUSG00000066270.4	ENSMUST00000139408.2	343	1	0	173	0	-173	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACTAGTGAAGGCATTT	NA	NA	NA	NA	NA	NA	NA	NA	118667023	118666853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_118666900_118667000
ONT_simulated_read_16820097	chr6	-	318	1	NIC	ENSMUSG00000093661.2	novel	2593	9	NA	NA	39718	-1601	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAGAAAGAAAGAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	99604014	99603696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_99603700_99604000
ONT_simulated_read_16822456	chr10	+	874	6	FSM	ENSMUSG00000040034.16	ENST00000367404.8	858	6	-15	-1	-15	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	1908	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAGTGAAAAAACCTAGT	NA	NA	NA	NA	NA	NA	NA	NA	7543303	7554558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_7543446_7543765_7543889_7545316_7545395_7546702_7546884_7552003_7552127_7554331
ONT_simulated_read_16823439	chr4	+	403	4	ISM	ENSMUSG00000037266.19	ENSMUST00000078084.7	1749	5	868	585	518	-234	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGGGTTTGTGTCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	134651770	134654397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_134651794_134652603_134652744_134654045_134654130_134654241
ONT_simulated_read_16828127	chr16	-	1096	1	ISM	ENSMUSG00000022680.15	ENSMUST00000023361.12	4228	24	68792	92	68686	-92	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGGCTGGCCTCTACCT	NA	NA	NA	NA	NA	NA	NA	NA	13652199	13651103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_13651100_13652200
ONT_simulated_read_16831177	chr2	-	1464	12	ISM	ENSMUSG00000017412.16	ENST00000397327.7	2139	13	2185	397	292	-310	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	317	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGACATAGGCTTTGAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	52446373	52324516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_52324762_52326897_52327084_52341880_52342033_52345611_52345722_52354621_52354681_52355609_52355691_52355905_52355926_52357255_52357333_52359488_52359620_52364874_52364998_52367703_52367824_52446213
ONT_simulated_read_16833628	chr18	-	714	5	ISM	ENSMUSG00000056162.15	ENSMUST00000070139.9	2829	12	18033	7661	5905	-7649	internal_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAACCATCAAAACAGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	84650187	84636294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_84636421_84637640_84637806_84640276_84640438_84646920_84647006_84650010
ONT_simulated_read_16834227	chr2	-	1931	1	ISM	ENSMUSG00000026932.15	ENSMUST00000114159.9	6675	6	33163	1549	33163	-1549	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGGAGCTACTGGGACAGA	NA	NA	NA	NA	NA	NA	NA	NA	25949026	25947095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25947100_25949000
ONT_simulated_read_16835232	chr7	-	466	3	ISM	ENSMUSG00000032875.9	ENSMUST00000209041.2	4516	21	17800	1391	17800	-1391	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGCTGGTCATCAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	100526097	100522732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_100522804_100525619_100525890_100525972
ONT_simulated_read_16837433	chr5	+	463	6	ISM	ENSMUSG00000029389.18	ENSMUST00000111438.2	2737	14	44	11551	44	-11551	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGGATGTGCTGGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	124691020	124696172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_124691103_124692605_124692657_124692733_124692821_124694819_124694912_124695024_124695088_124696084
ONT_simulated_read_16838002	chr13	-	1460	1	NIC	ENSMUSG00000056749.8	novel	2026	2	NA	NA	12051	-354	mono-exon	FALSE	NA	NA	NA	NA	NA	168	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAATAGCAAACTTATCTG	NA	NA	NA	NA	NA	NA	NA	NA	53123058	53121598	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_53121600_53123100
ONT_simulated_read_16838306	chrX	-	246	3	ISM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	8947	5424	8947	-5424	internal_fragment	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGAGCAGCAGCCAGCAC	NA	NA	NA	NA	NA	NA	NA	NA	158912462	158910628	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_158910725_158911460_158911554_158912405
ONT_simulated_read_16838604	chr1	-	1379	6	ISM	ENSMUSG00000026098.14	ENST00000639501.1	1925	8	6819	9674	6819	-9674	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGGACGGCTTACAGCC	NA	NA	NA	NA	NA	NA	NA	NA	53314412	53245910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_53246572_53246734_53246879_53247121_53247245_53295787_53295952_53306986_53307090_53314228
ONT_simulated_read_16840162	chr10	+	1840	15	ISM	ENSMUSG00000038822.16	ENST00000369125.6	3073	19	12	25637	0	-25637	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCGTATGACAAGAGCCATT	NA	NA	NA	NA	NA	NA	NA	NA	45453924	45562725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_45454247_45464475_45464531_45465576_45465667_45466363_45466469_45481604_45481681_45494593_45494726_45514416_45514500_45524686_45524784_45524949_45525052_45525976_45526084_45528683_45528835_45546441_45546777_45547227_45547297_45547534_45547623_45562697
ONT_simulated_read_1684050	chr12	+	639	6	ISM	ENSMUSG00000004789.11	ENSMUST00000053811.10	2764	15	12961	1366	12961	-1366	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCCAAGAGTCCTCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	85170567	85179496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
ONT_simulated_read_16840782	chr11	+	713	8	ISM	ENSMUSG00000034940.16	ENST00000619541.4	3733	21	7	51236	0	-51194	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTTTATCCCATTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	83855301	83880560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_83855373_83862377_83862419_83867908_83868028_83869745_83869877_83872242_83872349_83873021_83873134_83878738_83878817_83880505
ONT_simulated_read_16840957	chr17	-	2136	13	ISM	ENSMUSG00000052752.16	ENSMUST00000088464.12	2504	20	6124	-288	6124	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCATGTTCAGATGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	24732058	24727535	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923
ONT_simulated_read_16841379	chr12	-	862	1	ISM	ENSMUSG00000047832.10	ENSMUST00000062092.7	2425	2	7301	998	7301	-990	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTCTAGTCTATTTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	112785708	112784846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_112784800_112785700
ONT_simulated_read_16843350	chr16	+	588	5	ISM	ENSMUSG00000052133.17	ENSMUST00000050625.15	4350	22	119734	1116	119734	-1108	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGAGCCAACTTCTACC	NA	NA	NA	NA	NA	NA	NA	NA	35481674	35483515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_35481833_35481935_35482086_35482659_35482705_35483062_35483269_35483486
ONT_simulated_read_16844901	chr7	-	1686	1	ISM	ENSMUSG00000038520.16	ENSMUST00000047085.16	8750	17	12767	0	12578	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCCCATGTTAGTGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	44485732	44484046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44484000_44485700
ONT_simulated_read_16845127	chr15	+	1180	1	ISM	ENSMUSG00000037075.8	ENSMUST00000036904.7	4348	2	11788	194	11788	-194	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCCAAGGGCACGGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	58772865	58774045	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_58772900_58774000
ONT_simulated_read_16845249	chr11	+	1630	8	ISM	ENSMUSG00000020463.16	ENSMUST00000102856.9	2410	12	57	10811	57	-10811	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGATACTGACCCTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	29122946	29148830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792
ONT_simulated_read_16849148	chr3	-	606	5	ISM	ENSMUSG00000027882.19	ENSMUST00000102621.11	2419	19	40366	505	40365	-493	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATGTGGTTTTCAAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	108707461	108700996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_108701181_108702117_108702270_108704696_108704783_108706539_108706633_108707370
ONT_simulated_read_16850895	chr10	-	1891	6	ISM	ENSMUSG00000020114.13	ENSMUST00000020315.13	7766	15	23356	11939	23356	-11939	internal_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCATTGCCAAATGTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	119052604	119047098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_119048054_119048344_119048487_119049451_119049745_119051106_119051253_119052047_119052154_119052355
ONT_simulated_read_16854603	chr3	-	378	3	ISM	ENSMUSG00000027981.15	ENSMUST00000106535.2	2616	15	13286	7468	13286	-7468	internal_fragment	FALSE	canonical	NA	NA	NA	NA	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTTCTAGAAAAGAGTT	NA	NA	NA	NA	NA	NA	NA	NA	113410512	113407452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_113407566_113409011_113409161_113410396
ONT_simulated_read_1685774	chr19	-	725	1	FSM	ENSMUSG00000095098.3	ENSMUST00000179549.3	4715	1	0	3990	0	-3985	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGCGACCTCTGCTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	5507922	5507197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5507200_5507900
ONT_simulated_read_16860153	chrY	+	1160	1	ISM	ENSMUSG00000096768.9	ENSMUST00000238471.2	3347	2	0	24855	0	-24837	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGGTTACAGGACACTGTA	NA	NA	NA	NA	NA	NA	NA	NA	90801719	90802879	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrY_+_90801700_90802900
ONT_simulated_read_16864345	chr19	-	357	1	ISM	ENSMUSG00000016495.13	ENSMUST00000143467.8	1020	6	13015	0	12918	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAATGTCCTGCTGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	29326355	29325998	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_29326000_29326400
ONT_simulated_read_16865190	chr7	-	322	1	Antisense	novelGene_ENSMUSG00000030852.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCCCCACTCCACAGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	130330503	130330181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr7_-_130330200_130330500
ONT_simulated_read_16865756	chr17	+	983	5	ISM	ENSMUSG00000041354.17	ENSMUST00000047503.16	3252	18	5806	229	5806	-229	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTAACCATGTTGGATACCT	NA	NA	NA	NA	NA	NA	NA	NA	34154361	34156432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
ONT_simulated_read_16866915	chr9	+	790	8	ISM	ENSMUSG00000034973.17	ENSMUST00000034987.15	8933	37	47596	10422	47596	-9243	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATACAAGGTAAACCATTA	NA	NA	NA	NA	NA	NA	NA	NA	86415055	86427437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_86415088_86417960_86418028_86418167_86418313_86418495_86418576_86424411_86424522_86424787_86424938_86425061_86425124_86427293
ONT_simulated_read_16866992	chr10	-	486	5	ISM	ENSMUSG00000020079.16	ENSMUST00000020273.16	2604	15	199	14295	199	-14295	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAAGACTTACCATGCCA	NA	NA	NA	NA	NA	NA	NA	NA	62285318	62279282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62279343_62280817_62280933_62282802_62282911_62283474_62283553_62285193
ONT_simulated_read_16870612	chr7	-	548	2	ISM	ENSMUSG00000032776.10	ENST00000543482.5	1355	10	46932	35515	-34	-35515	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGAAGAATCTGTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	71909345	71896869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_71896919_71908846
ONT_simulated_read_16871718	chr5	+	535	3	ISM	ENSMUSG00000029591.15	ENSMUST00000031587.13	1985	7	0	7043	0	-7038	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGCTGGGGTCTGGCTA	NA	NA	NA	NA	NA	NA	NA	NA	114268446	114270341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_114268687_114269379_114269575_114270241
ONT_simulated_read_16875377	chr17	-	2300	1	ISM	ENSMUSG00000048027.10	ENSMUST00000170578.3	5698	3	18804	2295	18649	-817	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTGAGCTTTCAAGCAT	NA	NA	NA	NA	NA	NA	NA	NA	16028044	16025744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_16025700_16028000
ONT_simulated_read_16877526	chr6	+	743	5	ISM	ENSMUSG00000042389.14	ENSMUST00000040234.9	2106	12	0	18686	0	5670	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCCCCCAGGAAACCCTC	NA	NA	NA	NA	NA	NA	NA	NA	115521624	115536903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_115521690_115524782_115524992_115526873_115526956_115530951_115530989_115536553
ONT_simulated_read_16878933	chr9	+	680	3	NIC	ENSMUSG00000096385.8	novel	672	5	NA	NA	0	0	intron_retention	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTCCATGTCTTACAGT	NA	NA	NA	NA	NA	NA	NA	NA	3005158	3006948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_3005362_3006180_3006552_3006842
ONT_simulated_read_16878987	chr15	-	1053	1	NIC	ENSMUSG00000016757.12	novel	3774	14	NA	NA	18108	-907	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTCCTAATTTTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	83461250	83460197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_83460200_83461200
ONT_simulated_read_16879964	chrX	-	275	1	ISM	ENSMUSG00000031232.18	ENSMUST00000238718.2	4524	10	40459	3082	40340	-688	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTCAAAACTACTATAGT	NA	NA	NA	NA	NA	NA	NA	NA	105015046	105014771	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_105014800_105015000
ONT_simulated_read_16880428	chr15	-	1019	2	ISM	ENSMUSG00000022994.10	ENSMUST00000228566.2	3707	21	11933	-561	11933	561	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGCCAAAGAATGCAGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	98490679	98489463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_98490357_98490553
ONT_simulated_read_1688255	chr11	+	851	7	ISM	ENSMUSG00000002059.19	ENSMUST00000108322.9	1685	10	1574	0	1431	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	NA	NA	NA	NA	NA	NA	NA	NA	78081178	78083014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
ONT_simulated_read_1688398	chr14	-	1159	7	ISM	ENSMUSG00000060373.16	ENSMUST00000227536.2	1301	8	19577	62	0	-59	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTTTTGCTTTAATTTT	NA	NA	NA	NA	NA	NA	NA	NA	52321849	52312317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571
ONT_simulated_read_16885339	chr4	-	2633	2	ISM	ENSMUSG00000038668.15	ENSMUST00000107570.2	3244	3	12217	457	12217	-457	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCTCCAGCAATCACCCA	NA	NA	NA	NA	NA	NA	NA	NA	58487186	58435711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_58437635_58486476
ONT_simulated_read_16886052	chr7	-	841	6	ISM	ENSMUSG00000003435.10	ENST00000402194.6	3318	28	21622	36	21622	-36	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTCCGCTTCCTAGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	28016310	28014584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208
ONT_simulated_read_16886099	chr3	+	1515	3	ISM	ENSMUSG00000047213.15	ENST00000617200.1	5051	4	62	12004	0	-9365	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGATGCAGCTTATCGTT	NA	NA	NA	NA	NA	NA	NA	NA	16237399	16259194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_16237685_16238085_16238111_16257989
ONT_simulated_read_16886440	chr14	-	949	5	ISM	ENSMUSG00000035953.15	ENSMUST00000049312.14	1594	7	1166	231	1122	-231	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTCCTGTGGGGTGGGGTA	NA	NA	NA	NA	NA	NA	NA	NA	51167147	51164902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_51165495_51166277_51166369_51166462_51166516_51166658_51166765_51167040
ONT_simulated_read_1688704	chr5	-	692	5	ISM	ENSMUSG00000039753.17	ENSMUST00000121736.6	2144	9	13887	1894	13852	-1894	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCAGACCGACATTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	43925592	43917120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405
ONT_simulated_read_16887441	chr2	-	631	1	ISM	ENSMUSG00000050619.15	ENST00000396976.6	2660	6	8747	160119	8606	-192	mono-exon	FALSE	NA	NA	NA	NA	NA	4158	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGGAGAGAGACCCCATGT	NA	NA	NA	NA	NA	NA	NA	NA	120991999	120991368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_120991400_120992000
ONT_simulated_read_1688855	chr11	-	290	4	ISM	ENSMUSG00000001441.14	ENSMUST00000167806.8	2307	18	45404	20939	32594	8264	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGAGATGAGTGTGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	97125908	97117606	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97117695_97120655_97120720_97122714_97122825_97125880
ONT_simulated_read_16888797	chr9	+	623	6	ISM	ENSMUSG00000032607.13	ENST00000538581.6	1316	9	69	1716	52	-1716	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGGAGGTGTTCGGTG	NA	NA	NA	NA	NA	NA	NA	NA	108174120	108177016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108174225_108174340_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943
ONT_simulated_read_1689	chr12	-	2016	12	ISM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	4725	2858	4725	-2858	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGAAAACTGCGGGGCGA	NA	NA	NA	NA	NA	NA	NA	NA	11311042	11291778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_11292578_11293190_11293335_11296289_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882
ONT_simulated_read_16891164	chr15	-	429	3	ISM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	5960	3411	5960	-3411	internal_fragment	FALSE	canonical	NA	NA	NA	NA	379	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTTGAGCCACCTAAACC	NA	NA	NA	NA	NA	NA	NA	NA	31595990	31594356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_31594393_31594479_31594673_31595790
ONT_simulated_read_16891767	chr10	-	1303	14	ISM	ENSMUSG00000035189.18	ENSMUST00000182790.8	4018	27	222119	29786	221955	-29422	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCGACAAGAACATGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	88871043	88814649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_88814681_88816805_88816904_88817020_88817079_88818038_88818151_88819616_88819654_88828736_88828902_88831085_88831227_88833939_88834023_88851936_88851998_88859737_88859835_88860827_88860963_88863056_88863179_88865120_88865177_88870936
ONT_simulated_read_16893164	chr15	-	153	3	ISM	ENSMUSG00000022403.16	ENSMUST00000023039.15	1089	12	9888	17571	-1304	-17571	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAGAAGAAGGGGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	81273907	81267221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81267248_81272530_81272602_81273851
ONT_simulated_read_1689349	chr19	-	1379	1	NIC	ENSMUSG00000034659.15	novel	2188	4	NA	NA	9851	-112	mono-exon	FALSE	NA	NA	NA	NA	NA	1037	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTTTGATGTGGAATCAT	NA	NA	NA	NA	NA	NA	NA	NA	10849514	10848135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_10848100_10849500
ONT_simulated_read_1689622	chr8	+	1501	9	FSM	ENSMUSG00000054162.16	ENST00000541354.5	2661	9	0	1160	0	-81	multi-exon	TRUE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGTGTGCTTGGGATCA	NA	NA	NA	NA	NA	NA	NA	NA	63404833	63808729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_63405023_63566576_63566623_63673673_63673798_63698132_63698248_63781897_63782018_63798698_63798921_63801953_63802017_63805214_63805353_63808245
ONT_simulated_read_16898538	chr11	+	206	1	ISM	ENSMUSG00000018567.15	ENST00000571253.1	838	3	16	2512	16	-2512	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGAGCTTGACAACCCAG	NA	NA	NA	NA	NA	NA	NA	NA	69882632	69882838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_69882600_69882800
ONT_simulated_read_16903324	chr4	+	1298	2	ISM	ENSMUSG00000044496.7	ENSMUST00000103232.2	2731	3	0	2572	0	-2572	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCAACGCTCAACTAT	NA	NA	NA	NA	NA	NA	NA	NA	148025351	148029199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_148026515_148029064
ONT_simulated_read_16904181	chr1	-	652	8	ISM	ENSMUSG00000026245.17	ENSMUST00000068333.14	1951	17	17740	33549	17702	-33549	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGCAACAAAGGCAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	78447794	78435253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719
ONT_simulated_read_16905013	chrX	-	285	2	ISM	ENSMUSG00000015289.5	ENSMUST00000015433.4	761	3	616	182	573	-181	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGCAATACAATTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	73396608	73395948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_73396105_73396479
ONT_simulated_read_16905197	chr14	-	3443	16	ISM	ENSMUSG00000021910.16	ENSMUST00000022469.13	5559	21	2289	3497	2188	-3497	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCTGGCACAAGCAGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	30926469	30896383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_30896844_30898286_30899670_30901792_30901843_30902778_30902907_30906898_30907008_30907268_30907383_30908715_30908845_30909015_30909202_30909606_30909676_30910595_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398
ONT_simulated_read_16911199	chr6	-	238	2	ISM	ENSMUSG00000030008.10	ENSMUST00000032080.9	1038	5	3615	398	3580	-173	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGCAACCTCCGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	85424650	85424189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_85424280_85424502
ONT_simulated_read_16911989	chr7	+	1876	1	FSM	ENSMUSG00000063902.14	ENSMUST00000051522.16	1378	1	0	-498	0	498	mono-exon	FALSE	NA	NA	NA	NA	NA	1411	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAGTGAATCTAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	83405111	83406987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_83405100_83407000
ONT_simulated_read_16912098	chr2	+	784	9	ISM	ENSMUSG00000027575.20	ENST00000547204.5	1230	12	2463	56	2448	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCTAGCACCCTAGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	180615295	180623163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620204_180620235_180620963_180621021_180621453_180621514_180622196_180622268_180622829
ONT_simulated_read_16912199	chr1	-	385	3	ISM	ENSMUSG00000058407.13	ENSMUST00000162031.8	3381	5	72	8881	0	-6427	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCGAGAGAGACTTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	38036324	38033150	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_38033192_38034713_38034923_38036189
ONT_simulated_read_16913190	chr4	-	540	1	ISM	ENSMUSG00000037752.5	ENSMUST00000045550.5	4245	3	4000	3110	4000	-3110	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTGGATGGGACCCTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	132455857	132455317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_132455300_132455900
ONT_simulated_read_16914706	chr11	+	588	6	ISM	ENSMUSG00000020859.17	ENST00000510283.5	4667	27	38639	31942	38423	-31942	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCAGGTGAAGGCTCACGT	NA	NA	NA	NA	NA	NA	NA	NA	93973613	93982638	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_93973739_93974773_93974826_93977072_93977204_93980424_93980482_93981383_93981558_93982589
ONT_simulated_read_16916234	chr16	-	176	2	ISM	ENSMUSG00000022505.10	ENSMUST00000078357.5	3440	5	97	10560	97	-10560	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACATCGTGTCCACGGCA	NA	NA	NA	NA	NA	NA	NA	NA	10131735	10110172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_10110289_10131675
ONT_simulated_read_16920864	chr2	+	794	5	ISM	ENSMUSG00000074570.15	ENSMUST00000228775.2	2629	6	0	6142	0	-2836	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGATTCATGACACTCCGG	NA	NA	NA	NA	NA	NA	NA	NA	172235820	172268638	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_172235926_172258039_172258463_172265518_172265621_172266519_172266601_172268555
ONT_simulated_read_16920979	chr8	-	1639	2	ISM	ENSMUSG00000031832.16	ENSMUST00000093099.13	3236	15	5532	0	5532	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGGTGTGTAAAGCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	120326429	120324713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_120326243_120326319
ONT_simulated_read_1692406	chr7	-	1267	1	NIC	ENSMUSG00000058886.10	novel	2135	12	NA	NA	25918	-75	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGCTGTGGCCTCCCAA	NA	NA	NA	NA	NA	NA	NA	NA	140881573	140880306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_140880300_140881600
ONT_simulated_read_16924524	chr12	-	1098	2	ISM	ENSMUSG00000021253.8	ENSMUST00000003687.8	3383	7	390	13139	390	-13139	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTCTAAGGTTTTTCGT	NA	NA	NA	NA	NA	NA	NA	NA	86125425	86116657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_86116685_86124354
ONT_simulated_read_16926839	chr6	-	3158	6	ISM	ENSMUSG00000030352.16	ENSMUST00000112171.8	2584	9	169436	-874	169436	-532	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATCCTGTCTCCGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	127944236	127938890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_127941463_127942200_127942285_127942661_127942794_127943344_127943447_127943691_127943767_127944043
ONT_simulated_read_16927173	chr19	-	1196	6	ISM	ENSMUSG00000056999.17	ENSMUST00000131070.3	5059	25	81867	1535	81867	-1283	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAATGCCATGTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	37258143	37247676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983
ONT_simulated_read_169274	chr8	+	695	4	FSM	ENSMUSG00000005161.16	ENST00000334482.9	698	4	5	-2	0	2	multi-exon	FALSE	canonical	NA	NA	NA	NA	1488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTAAGTCTGTGTTGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	85696867	85700940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_85696974_85697064_85697219_85697915_85698039_85700628
ONT_simulated_read_16928450	chr3	+	272	2	ISM	ENSMUSG00000045328.12	ENSMUST00000062893.12	7910	46	46705	13506	46705	-13506	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCTTAAGAGCACCATC	NA	NA	NA	NA	NA	NA	NA	NA	134965002	134965866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_134965148_134965739
ONT_simulated_read_16930264	chr11	-	405	1	ISM	ENSMUSG00000005043.14	ENSMUST00000005173.11	4357	8	8737	2913	8711	-2897	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTCAGCTTGTCAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	119237625	119237220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_119237200_119237600
ONT_simulated_read_16930490	chr16	-	1600	1	ISM	ENSMUSG00000040681.17	ENSMUST00000050884.16	2174	6	5312	200	5187	-200	mono-exon	FALSE	NA	NA	NA	NA	NA	4355	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCCAATTGCACAGACTT	NA	NA	NA	NA	NA	NA	NA	NA	95923617	95922017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_95922000_95923600
ONT_simulated_read_16933040	chr8	-	820	7	ISM	ENSMUSG00000031645.5	ENSMUST00000034064.5	2240	15	11889	4603	26	-4337	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGGTGGCATTGTAAATCA	NA	NA	NA	NA	NA	NA	NA	NA	45703179	45698813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_45698842_45699783_45699944_45701590_45701704_45701780_45701944_45702047_45702158_45702541_45702702_45703093
ONT_simulated_read_16934389	chr7	-	1556	10	ISM	ENSMUSG00000030894.6	ENSMUST00000033184.6	3558	13	1904	1726	1398	-147	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTGCCTGCTGCAGATA	NA	NA	NA	NA	NA	NA	NA	NA	105399538	105395743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386
ONT_simulated_read_16934668	chr3	-	710	6	ISM	ENSMUSG00000040774.16	ENSMUST00000121231.8	2121	9	16305	695	16305	-695	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATACATGTCTTCAGAATT	NA	NA	NA	NA	NA	NA	NA	NA	106438593	106410993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452
ONT_simulated_read_16934968	chr6	-	770	7	ISM	ENSMUSG00000030268.18	ENSMUST00000032402.12	7833	11	15910	6429	6735	-1106	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGCAAAGCTCAGGGTATC	NA	NA	NA	NA	NA	NA	NA	NA	144978628	144945989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508
ONT_simulated_read_16937466	chr14	+	284	2	ISM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	25176	1681	25176	-1681	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGATTTTTTTTGGGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	56930880	56933206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_56931036_56933077
ONT_simulated_read_16937607	chr6	+	455	4	ISM	ENSMUSG00000030166.15	ENSMUST00000032269.12	1617	12	12476	3820	2249	2974	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTCCGGGAACAGATGG	NA	NA	NA	NA	NA	NA	NA	NA	119892212	119895964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_119892314_119892927_119893004_119895547_119895748_119895886
ONT_simulated_read_16939191	chr18	-	112	2	ISM	ENSMUSG00000041923.16	ENSMUST00000081423.13	3309	11	116746	227500	116746	-226346	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCAATCACAATGGCGTA	NA	NA	NA	NA	NA	NA	NA	NA	23054967	23053937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_23053985_23054902
ONT_simulated_read_1694220	chr4	-	762	5	ISM	ENSMUSG00000028684.15	ENST00000636836.1	1076	8	666	66	666	-66	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCCTTTCTGCTCAAGT	NA	NA	NA	NA	NA	NA	NA	NA	116850219	116847481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_116847646_116848589_116848691_116848817_116848956_116849760_116849923_116850022
ONT_simulated_read_16943755	chr4	-	749	1	ISM	ENSMUSG00000028603.16	ENSMUST00000030340.15	2640	16	73708	237	26538	-223	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAATAAAAATAACTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	107902021	107901272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_107901300_107902000
ONT_simulated_read_16944668	chr6	-	1004	4	ISM	ENSMUSG00000030203.18	ENSMUST00000100857.10	5104	7	52654	3019	21459	-1316	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCCACATCCCCAAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	134716934	134695454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_134696015_134697456_134697581_134702798_134702959_134716774
ONT_simulated_read_1694964	chr16	+	1733	1	FSM	ENSMUSG00000118559.3	ENSMUST00000239037.2	3972	1	0	2239	0	-2239	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTGACAGTTTCCCCG	NA	NA	NA	NA	NA	NA	NA	NA	13572429	13574162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_13572400_13574200
ONT_simulated_read_16952576	chr10	-	997	3	ISM	ENSMUSG00000019927.7	ENSMUST00000020085.7	1431	7	26976	78	26976	-78	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGCAATATTATATTGACA	NA	NA	NA	NA	NA	NA	NA	NA	71094116	71090887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_71091705_71092444_71092539_71094030
ONT_simulated_read_16953707	chr5	-	336	3	ISM	ENSMUSG00000070733.14	ENSMUST00000094700.11	9852	60	-75	112088	-75	-112088	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGACGATGAATCCTACGG	NA	NA	NA	NA	NA	NA	NA	NA	73305554	73290641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_73290729_73293664_73293719_73305359
ONT_simulated_read_16958117	chr17	-	1066	6	ISM	ENSMUSG00000024002.19	ENST00000360016.9	2406	11	59049	3633	58418	-3633	internal_fragment	FALSE	canonical	NA	NA	NA	NA	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAGCCAGTTGTTACAG	NA	NA	NA	NA	NA	NA	NA	NA	32444653	32433773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549
ONT_simulated_read_16959218	chr9	-	1618	1	ISM	ENSMUSG00000032503.19	ENSMUST00000178410.2	3419	5	5112	1165	2955	-214	mono-exon	FALSE	NA	NA	NA	NA	NA	1179	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTGATGGTTCAGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	112011882	112010264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_112010300_112011900
ONT_simulated_read_16960116	chr14	+	396	4	ISM	ENSMUSG00000032925.17	ENST00000376180.8	1881	11	1223	129827	1223	-129827	internal_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTGGCATGGCGATAAATG	NA	NA	NA	NA	NA	NA	NA	NA	123898835	124081249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_123898921_124065163_124065311_124077974_124078098_124081208
ONT_simulated_read_16960911	chr3	-	280	1	ISM	ENSMUSG00000074653.11	ENST00000523069.1	1347	7	11979	3	11979	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGTGCTGCTTTGTAAAC	NA	NA	NA	NA	NA	NA	NA	NA	30733486	30733206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_30733200_30733500
ONT_simulated_read_16961826	chr15	+	1031	8	ISM	ENSMUSG00000116378.2	ENSMUST00000171999.9	1736	9	0	5758	0	-5758	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGTTTTACTGTCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	78915100	78920973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919976_78920132_78920219_78920303_78920466_78920639_78920952
ONT_simulated_read_16962139	chr11	-	363	1	ISM	ENSMUSG00000020801.9	ENST00000575197.1	443	2	2140	0	2140	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3739	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCACTTTGATTTCTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	72102903	72102540	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_72102500_72102900
ONT_simulated_read_1696385	chr2	-	3382	1	ISM	ENSMUSG00000051747.16	ENSMUST00000099980.10	16891	45	62021	3109	59748	-3061	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAACAACCTGCTTCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	76750778	76747396	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_76747400_76750800
ONT_simulated_read_16963978	chr1	-	1329	11	NIC	ENSMUSG00000026024.15	novel	6542	33	NA	NA	2097	1435	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTTTGAAGAATGCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	59231210	59217810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_59217859_59218218_59218353_59219264_59219343_59219707_59219820_59222322_59222488_59222939_59223039_59224371_59224438_59224555_59224759_59226479_59226609_59226893_59227026_59231047
ONT_simulated_read_16964994	chr17	-	1917	16	ISM	ENSMUSG00000024066.10	ENSMUST00000024866.6	4600	36	23566	22844	23488	-20396	internal_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAGCACTCTGATATCCAC	NA	NA	NA	NA	NA	NA	NA	NA	74233611	74213733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_74213824_74214615_74214741_74216241_74216339_74217160_74217281_74219411_74219536_74220865_74221036_74222671_74222756_74223782_74223958_74225367_74225553_74227387_74227498_74228261_74228356_74229407_74229560_74230037_74230131_74231909_74232052_74233168_74233256_74233542
ONT_simulated_read_16965121	chr2	+	904	10	ISM	ENSMUSG00000017858.13	ENST00000373030.8	1343	13	4943	4684	4943	-4684	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGTCCAACCTCAGTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	162864362	162882586	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546
ONT_simulated_read_16966204	chr1	-	632	5	ISM	ENSMUSG00000060771.16	ENST00000674128.1	3027	16	14717	52268	14716	25368	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATGAGCTGGGTCAGATT	NA	NA	NA	NA	NA	NA	NA	NA	37879739	37846115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_37846187_37873266_37873419_37874338_37874417_37874502_37874674_37879579
ONT_simulated_read_16969817	chr1	-	399	1	ISM	ENSMUSG00000000817.11	ENSMUST00000000834.4	1937	4	6529	879	6323	3	mono-exon	FALSE	NA	NA	NA	NA	NA	272	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTTTAAAATGATCTACT	NA	NA	NA	NA	NA	NA	NA	NA	161609535	161609136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_161609100_161609500
ONT_simulated_read_16974504	chr3	-	1483	1	NIC	ENSMUSG00000027833.17	novel	3283	5	NA	NA	4537	352	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAGGGCATCGTGATA	NA	NA	NA	NA	NA	NA	NA	NA	66881243	66879760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_66879800_66881200
ONT_simulated_read_16975388	chr2	+	1658	1	FSM	ENSMUSG00000095824.2	ENSMUST00000099948.3	2493	1	705	130	0	-130	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATGACAGAAGCCATGAGA	NA	NA	NA	NA	NA	NA	NA	NA	83815791	83817449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_83815800_83817400
ONT_simulated_read_16975549	chr7	+	1572	11	ISM	ENSMUSG00000006649.18	ENST00000353632.6	3561	27	2587	15957	2587	-15955	internal_fragment	FALSE	canonical	NA	NA	NA	NA	130	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGTAACTTCGAGGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	30162333	30170186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_30162412_30162576_30162735_30162936_30163082_30163202_30163328_30164890_30165078_30165176_30165307_30165433_30165607_30166644_30166786_30166865_30167007_30167327_30167450_30170014
ONT_simulated_read_1697566	chr3	+	895	8	ISM	ENSMUSG00000028256.17	ENSMUST00000098538.9	2564	17	19	21220	8	-18408	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAAGCAAGAGGCTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	144824368	144838436	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_144824544_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392
ONT_simulated_read_16976717	chr9	+	1290	5	ISM	ENSMUSG00000032294.18	ENST00000389093.7	2108	9	15117	-3	15013	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	59578868	59586658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ONT_simulated_read_16976961	chr15	-	128	2	ISM	ENSMUSG00000022403.16	ENST00000453250.1	866	9	10632	9412	10632	-9412	internal_fragment	FALSE	canonical	NA	NA	NA	NA	402	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTAAACTGGATTATGACG	NA	NA	NA	NA	NA	NA	NA	NA	81261971	81259062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81259108_81261888
ONT_simulated_read_1697790	chr10	-	306	2	ISM	ENSMUSG00000039497.9	ENST00000647244.1	899	3	21196	99	21195	-99	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	200	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGACTTATGGAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	34038962	34029895	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_34029971_34038731
ONT_simulated_read_16978426	chr5	+	1648	7	ISM	ENSMUSG00000029516.20	ENSMUST00000141101.5	6794	46	0	121317	0	-121292	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCGGACCTTCAACAACAT	NA	NA	NA	NA	NA	NA	NA	NA	115983702	116023095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924
ONT_simulated_read_16978779	chr19	-	4134	11	ISM	ENSMUSG00000006464.10	ENSMUST00000053506.8	5602	17	3748	889	3740	-889	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGACCGTGAGAAGCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	4952908	4937794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4940787_4941017_4941105_4941680_4941816_4942915_4943050_4944288_4944448_4944989_4945060_4947307_4947467_4947601_4947723_4949227_4949335_4950518_4950651_4952870
ONT_simulated_read_16982391	chr9	-	1353	11	ISM	ENSMUSG00000041361.14	ENSMUST00000093823.8	2283	13	27807	660	27712	51	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCGAGACAGAGAGAGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	71471835	71412288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_71412512_71422350_71422452_71432063_71432148_71453950_71454057_71456005_71456086_71457460_71457590_71459520_71459647_71462866_71463020_71466129_71466244_71468236_71468330_71471691
ONT_simulated_read_1698240	chr17	-	341	2	ISM	ENSMUSG00000033475.16	ENSMUST00000113302.10	749	3	924	94	809	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATTTTATTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	47998184	47997664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_47997934_47998112
ONT_simulated_read_16984557	chr2	-	1438	3	ISM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	736	381	736	-381	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCACTCACCATGTGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	152185216	152179722	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_152180608_152181634_152181928_152184956
ONT_simulated_read_16986190	chr13	-	1216	1	ISM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	9033	2581	8963	994	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAGTTCACCAACACCTG	NA	NA	NA	NA	NA	NA	NA	NA	14229040	14227824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_14227800_14229000
ONT_simulated_read_16986862	chrX	-	1421	2	ISM	ENSMUSG00000034403.17	ENSMUST00000113797.4	1676	3	2387	170	2387	-170	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATACATTTTCTAACCTG	NA	NA	NA	NA	NA	NA	NA	NA	98511891	98509921	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_98511180_98511728
ONT_simulated_read_16990447	chr10	-	938	1	ISM	ENSMUSG00000019961.18	ENST00000266732.8	2957	5	8166	1984	7829	-1980	mono-exon	FALSE	NA	NA	NA	NA	NA	267	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCAGCTGCCCTCGGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	90999196	90998258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_90998300_90999200
ONT_simulated_read_16995606	chr2	-	579	4	ISM	ENSMUSG00000006469.14	ENST00000673835.1	1870	13	1721	2605	1721	-2605	internal_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCAGAGGAAGGTACCTG	NA	NA	NA	NA	NA	NA	NA	NA	25122506	25121667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25121876_25121962_25122075_25122158_25122303_25122391
ONT_simulated_read_1699807	chr15	+	236	4	ISM	ENSMUSG00000060992.10	ENST00000549116.5	380	7	5	2130	0	-2130	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTCTCTGCCCTGCCCG	NA	NA	NA	NA	NA	NA	NA	NA	103181336	103205038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_103181369_103197527_103197597_103203148_103203205_103204959
ONT_simulated_read_17001357	chr2	+	554	3	ISM	ENSMUSG00000044308.18	ENSMUST00000055758.16	8072	39	123266	2206	123266	-2206	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTAACCACAGTAATGGT	NA	NA	NA	NA	NA	NA	NA	NA	69850855	69852151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_69851005_69851455_69851596_69851886
ONT_simulated_read_17001406	chr13	+	775	1	ISM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	0	3998	0	-3690	mono-exon	FALSE	NA	NA	NA	NA	NA	410	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGGTGTGAGGAAGGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	55468312	55469087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_55468300_55469100
ONT_simulated_read_1700202	chr1	-	1692	1	NIC	ENSMUSG00000025920.20	novel	3030	14	NA	NA	173221	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAAGACTTTGATTCA	NA	NA	NA	NA	NA	NA	NA	NA	16416214	16414522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_16414500_16416200
ONT_simulated_read_17008135	chr16	+	2278	11	ISM	ENSMUSG00000040785.20	ENSMUST00000232660.2	8298	45	42240	25850	39809	-25727	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTCTTAAAGAGAAAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	94226006	94244352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329
ONT_simulated_read_1700831	chr2	-	608	2	ISM	ENSMUSG00000026766.17	ENST00000422782.2	1246	6	11765	-45	11765	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	NA	NA	NA	NA	NA	NA	NA	50171200	50169892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_50170415_50171114
ONT_simulated_read_1701034	chr18	-	349	2	ISM	ENSMUSG00000033184.15	ENSMUST00000151189.2	1348	3	4057	538	3836	-538	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTATTGGTCGGTGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	46726545	46721636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_46721756_46726315
ONT_simulated_read_17011157	chr13	+	515	1	ISM	ENSMUSG00000021518.5	ENSMUST00000021990.4	3424	13	64203	854	64203	-854	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAGCTTCAAAGCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	67145096	67145611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_67145100_67145600
ONT_simulated_read_17012028	chr1	+	239	3	ISM	ENSMUSG00000056569.12	ENSMUST00000111334.2	1278	6	4079	428	4074	-428	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGAGTCCTCCAAAGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	170987162	170987648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_170987203_170987342_170987404_170987510
ONT_simulated_read_17014466	chr14	-	1329	5	ISM	ENSMUSG00000021738.6	ENST00000484332.1	2682	9	22326	3025	22326	-2867	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAAGAGGATGAGTGTAA	NA	NA	NA	NA	NA	NA	NA	NA	8379735	8369147	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_8369829_8373447_8373570_8373864_8374064_8374161_8374407_8379653
ONT_simulated_read_17019627	chr7	-	254	2	ISM	ENSMUSG00000036989.17	ENSMUST00000147044.4	2972	12	15955	2603	15955	-2603	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGTGAGAAGCTTGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	105266737	105262459	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105262624_105266647
ONT_simulated_read_17020103	chr2	+	777	1	FSM	ENSMUSG00000061897.6	ENSMUST00000118761.2	456	1	0	-321	0	321	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAGAAGTCTTAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	178819217	178819994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_178819200_178820000
ONT_simulated_read_17021349	chr12	-	959	7	ISM	ENSMUSG00000020962.15	ENSMUST00000063314.7	2265	9	3699	4248	3221	-4248	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTGTCGTCTGCCAGTA	NA	NA	NA	NA	NA	NA	NA	NA	91553562	91529709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_91529773_91534313_91534635_91534910_91535045_91536536_91536613_91539339_91539408_91542357_91542566_91553473
ONT_simulated_read_17021995	chr4	-	497	3	ISM	ENSMUSG00000041459.16	ENST00000456601.1	803	5	4	1696	0	-1696	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGGAGAAGTGGTAGATG	NA	NA	NA	NA	NA	NA	NA	NA	148709819	148703716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_148703812_148706405_148706570_148709581
ONT_simulated_read_17022081	chr4	-	308	1	FSM	ENSMUSG00000083757.3	ENSMUST00000119415.2	392	1	0	84	0	-84	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGACAACCTAGGCTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	131947748	131947440	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_131947400_131947700
ONT_simulated_read_17026741	chr2	-	1719	1	ISM	ENSMUSG00000027104.19	ENSMUST00000112010.9	4037	13	73388	921	44142	836	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAATTAAAAAAAAAGTA	NA	NA	NA	NA	NA	NA	NA	NA	73649492	73647773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_73647800_73649500
ONT_simulated_read_17027186	chr4	-	313	1	ISM	ENSMUSG00000028840.11	ENSMUST00000030644.8	1994	3	698	1293	698	-1293	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAGCTTTGGAACGGGTA	NA	NA	NA	NA	NA	NA	NA	NA	133972205	133971892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_133971900_133972200
ONT_simulated_read_17029573	chr12	-	911	1	NIC	ENSMUSG00000021079.17	novel	794	4	NA	NA	6483	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAAGGAGAAAAATA	NA	NA	NA	NA	NA	NA	NA	NA	71172330	71171419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_71171400_71172300
ONT_simulated_read_17033783	chr6	+	966	9	ISM	ENSMUSG00000029757.17	ENSMUST00000115554.4	2518	16	6	104820	6	-104811	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATGGAGTGGCCTTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	5725817	5923219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_5725937_5757377_5757495_5767029_5767145_5769700_5769792_5800774_5800891_5905104_5905195_5913315_5913479_5915829_5915930_5923164
ONT_simulated_read_17035050	chr16	+	351	1	ISM	ENSMUSG00000025616.15	ENSMUST00000026710.12	3205	18	0	28464	0	-28257	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGGCTCCGGGCCCGTCGCG	NA	NA	NA	NA	NA	NA	NA	NA	87251590	87251941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_87251600_87251900
ONT_simulated_read_1703559	chr18	+	288	3	ISM	ENSMUSG00000024302.17	ENST00000681241.1	3152	19	116407	912	54134	-677	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATCCGTCTGTCCATTCT	NA	NA	NA	NA	NA	NA	NA	NA	23784624	23791819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_23784706_23786385_23786435_23791661
ONT_simulated_read_17038880	chr9	-	504	1	ISM	ENSMUSG00000032609.13	ENSMUST00000193286.6	2956	11	13105	337	3901	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCTGACCAGGCCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	108325675	108325171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_108325200_108325700
ONT_simulated_read_17039298	chr4	-	309	4	ISM	ENSMUSG00000028447.12	ENST00000378916.8	492	6	3209	0	3209	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCCCCACCAGGGGAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	41719923	41715156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_41715260_41715395_41715456_41716395_41716455_41719836
ONT_simulated_read_17044967	chr9	-	449	3	ISM	ENSMUSG00000025646.10	ENSMUST00000045011.9	2572	13	13421	38	13349	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCACTGATTAAAACTGCAC	NA	NA	NA	NA	NA	NA	NA	NA	108889771	108888852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_108888977_108889330_108889581_108889696
ONT_simulated_read_17045021	chr3	-	944	1	Antisense	novelGene_ENSMUSG00000039756.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	235	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATCTGAGTCCTCTGAAC	NA	NA	NA	NA	NA	NA	NA	NA	122070423	122069479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr3_-_122069500_122070400
ONT_simulated_read_17045885	chr17	-	1301	12	ISM	ENSMUSG00000025733.18	ENSMUST00000043897.16	3189	19	2580	1321	2580	-1321	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTGCCCCAGCTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	26061245	26058751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_26058866_26058958_26059082_26059228_26059310_26059411_26059543_26059624_26059726_26059809_26059953_26060025_26060111_26060335_26060457_26060532_26060642_26060730_26060830_26060963_26061066_26061153
ONT_simulated_read_17046230	chr4	-	658	6	ISM	ENSMUSG00000040044.12	ENSMUST00000108142.8	2266	20	36901	53	36901	-53	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAGTACTTCAAAGACTA	NA	NA	NA	NA	NA	NA	NA	NA	34578012	34570848	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952
ONT_simulated_read_17048651	chr15	-	743	1	ISM	ENSMUSG00000005354.17	ENSMUST00000005487.12	1298	4	13149	68	13111	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	1171	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGGTCCCTGAGCAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	77800057	77799314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_77799300_77800100
ONT_simulated_read_17049650	chr4	-	1359	3	ISM	ENSMUSG00000055900.15	ENSMUST00000106478.9	1962	5	2207	403	2206	-403	3prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTATAGTCATGTACCT	NA	NA	NA	NA	NA	NA	NA	NA	116410926	116409232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_116409321_116409518_116409542_116409678
ONT_simulated_read_17051672	chr2	+	766	7	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	20058	1429	20058	-359	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCACACATCTCGGACC	NA	NA	NA	NA	NA	NA	NA	NA	162916664	162925179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
ONT_simulated_read_1705289	chr6	-	854	7	ISM	ENSMUSG00000056305.5	ENST00000450066.6	1493	11	6530	712	6530	-712	internal_fragment	FALSE	canonical	NA	NA	NA	NA	189	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCAGATGATCACACTGT	NA	NA	NA	NA	NA	NA	NA	NA	72313432	72296759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_72296810_72298238_72298375_72302628_72302772_72305500_72305690_72306432_72306501_72310092_72310171_72313242
ONT_simulated_read_17054633	chr1	+	550	4	ISM	ENSMUSG00000013973.13	ENST00000458050.6	2259	6	-5	3464	-5	-2749	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATGTGACCCCCAGAGCC	NA	NA	NA	NA	NA	NA	NA	NA	171157177	171166435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_171157261_171158820_171158854_171165819_171166209_171166390
ONT_simulated_read_17056042	chr14	+	435	1	ISM	ENSMUSG00000022066.17	ENSMUST00000185072.8	3589	13	29456	206	29432	-206	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTCCTCATCTCTTCAACA	NA	NA	NA	NA	NA	NA	NA	NA	69822328	69822763	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_69822300_69822800
ONT_simulated_read_1705789	chr12	+	879	10	ISM	ENSMUSG00000020978.11	ENST00000554589.5	1343	12	5419	141	5419	-141	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCCACTTGCATGGAG	NA	NA	NA	NA	NA	NA	NA	NA	69349174	69357071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_69349216_69350307_69350424_69350654_69350737_69351317_69351402_69352401_69352483_69352556_69352616_69353963_69354074_69354391_69354465_69355731_69355820_69356926
ONT_simulated_read_17058220	chr11	-	1949	1	ISM	ENSMUSG00000020516.16	ENSMUST00000154617.8	5531	15	41864	2122	14697	335	mono-exon	FALSE	NA	NA	NA	NA	NA	543	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGGAGAGATGACTCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	86393767	86391818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_86391800_86393800
ONT_simulated_read_17059700	chr8	-	135	2	ISM	ENSMUSG00000035559.10	ENSMUST00000038626.10	980	5	1478	532	1478	-532	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCCGAGTCACCTATAT	NA	NA	NA	NA	NA	NA	NA	NA	71212114	71211826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71211884_71212036
ONT_simulated_read_17060299	chr3	-	2374	11	ISM	ENSMUSG00000028024.15	ENST00000265162.10	4118	20	33709	-15	33709	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGGCTCAGGGTGACAA	NA	NA	NA	NA	NA	NA	NA	NA	129092613	129062823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_129064072_129064993_129065073_129070290_129070432_129074071_129074243_129074333_129074439_129074550_129074625_129075192_129075344_129077516_129077573_129077698_129077833_129086854_129086935_129092478
ONT_simulated_read_17062812	chr14	-	1014	4	ISM	ENSMUSG00000021816.12	ENSMUST00000161445.8	3298	14	25826	8168	25719	-365	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCAAACGTTCTATGTATA	NA	NA	NA	NA	NA	NA	NA	NA	20570789	20558103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20558790_20559483_20559566_20565590_20565669_20570621
ONT_simulated_read_17063598	chr7	-	870	3	ISM	ENSMUSG00000070436.13	ENST00000530284.5	1039	4	2413	124	2413	-124	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTTGGAGAAGCTGCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	98998664	98996248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_98996365_98996472_98996572_98998009
ONT_simulated_read_17064846	chr8	+	3110	21	ISM	ENSMUSG00000025812.19	ENST00000350537.9	4703	25	249	137851	2	41290	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGATCCAAGATTTCCAT	NA	NA	NA	NA	NA	NA	NA	NA	127791096	128200915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036_128136099_128137209_128137255_128142050_128142279_128153002_128153235_128186754_128186866_128200859
ONT_simulated_read_17066384	chr10	-	722	5	ISM	ENSMUSG00000020048.14	ENST00000614327.2	2608	17	11388	50	11383	-50	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTTTAGTTGAATTTT	NA	NA	NA	NA	NA	NA	NA	NA	86529990	86526819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_86526993_86527492_86527613_86528249_86528329_86529240_86529378_86529777
ONT_simulated_read_1707153	chr7	-	1050	7	ISM	ENSMUSG00000025586.18	ENST00000616959.4	1772	10	10423	2325	10423	-2096	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGATCAAAACCACCAAGT	NA	NA	NA	NA	NA	NA	NA	NA	81011526	81000123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_81000188_81001491_81001691_81005622_81005760_81006656_81006747_81007052_81007167_81009476_81009730_81011333
ONT_simulated_read_17071817	chr1	+	1151	2	ISM	ENSMUSG00000006403.14	ENSMUST00000219033.2	4386	9	0	7996	0	-7996	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCTGCCGCTAAAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	171077991	171080209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_171079039_171080105
ONT_simulated_read_17072441	chr15	-	665	6	ISM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	5814	2676	5814	-2676	internal_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGCCAACGGGGAAGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	77849199	77845873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102
ONT_simulated_read_17074000	chr19	-	234	1	NIC	ENSMUSG00000025006.19	novel	2582	24	NA	NA	18789	-81703	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGCCAGACGTCACCACCC	NA	NA	NA	NA	NA	NA	NA	NA	40365429	40365195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_40365200_40365400
ONT_simulated_read_1707607	chr5	-	579	5	ISM	ENSMUSG00000005103.13	ENSMUST00000201260.4	2139	15	475	13214	475	-13214	internal_fragment	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGAACTGGGGCAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	38718503	38698143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_38698222_38703016_38703198_38704286_38704435_38708719_38708811_38718422
ONT_simulated_read_17079545	chr8	+	762	5	ISM	ENSMUSG00000004637.16	ENSMUST00000160862.8	1715	9	8515	6442	8508	-6442	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCAAGTCCATGGTAAGT	NA	NA	NA	NA	NA	NA	NA	NA	115174949	115438977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726
ONT_simulated_read_17082476	chrM	+	533	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	0	151	0	-151	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAAATCAAGCAACAGTAA	NA	NA	NA	NA	NA	NA	NA	NA	7012	7545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrM_+_7000_7500
ONT_simulated_read_17082848	chr11	+	458	3	ISM	ENSMUSG00000034121.13	ENST00000678463.1	1714	17	8709	0	8709	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAAACTGGATGATCTAG	NA	NA	NA	NA	NA	NA	NA	NA	87752762	87753940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_87752945_87753566_87753665_87753762
ONT_simulated_read_17083538	chr14	-	377	2	ISM	ENSMUSG00000021953.15	ENST00000525246.5	874	6	1749	1127	1749	-1127	internal_fragment	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTCCGCAAGCACGCGCC	NA	NA	NA	NA	NA	NA	NA	NA	63733342	63731257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_63731461_63733168
ONT_simulated_read_17084102	chr2	+	742	5	ISM	ENSMUSG00000026977.18	ENSMUST00000102748.11	3594	10	26	15272	26	-14018	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACCAAAAGAGAATGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	60040256	60064283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064242
ONT_simulated_read_17085132	chr8	-	1871	13	ISM	ENSMUSG00000031788.15	ENST00000562903.5	2369	16	492	1838	150	-1826	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAGCGAGACTCTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	95836902	95828755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_95828775_95828974_95829205_95829290_95829421_95830038_95830163_95830522_95830654_95832347_95832453_95833090_95833273_95834051_95834164_95834982_95835114_95835202_95835351_95835809_95835984_95836411_95836652_95836757
ONT_simulated_read_17086597	chr16	+	1013	8	ISM	ENSMUSG00000003234.17	ENSMUST00000003319.6	3090	21	0	9825	0	-9825	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGTAAAGCCCCACTTGG	NA	NA	NA	NA	NA	NA	NA	NA	20367326	20370304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_20367496_20367715_20367864_20367984_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223
ONT_simulated_read_17090541	chr2	+	1013	3	ISM	ENSMUSG00000007476.19	ENSMUST00000095078.3	4301	4	0	7803	0	-7798	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGATCAAGTTCGCCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	30127733	30145999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_30127818_30130580_30130690_30145179
ONT_simulated_read_17094173	chr2	-	308	1	NIC	ENSMUSG00000038765.15	novel	4887	8	NA	NA	75717	49	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCCCACCGGGCACAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	33454806	33454498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_33454500_33454800
ONT_simulated_read_17096128	chr9	-	121	1	ISM	ENSMUSG00000066892.15	ENSMUST00000131128.2	4182	2	674	6212	666	-5198	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATATGTTCCAGTCTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	20555377	20555256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_20555300_20555400
ONT_simulated_read_17096399	chr14	+	1311	7	ISM	ENSMUSG00000000957.12	ENSMUST00000089688.6	2596	10	52	2157	31	-2157	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTACGAGAGGAAGGATG	NA	NA	NA	NA	NA	NA	NA	NA	54669120	54676565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_54669431_54673201_54673351_54673594_54673718_54674071_54674380_54675057_54675220_54676121_54676283_54676467
ONT_simulated_read_17096723	chr11	-	926	1	ISM	ENSMUSG00000020807.16	ENSMUST00000238653.2	4390	19	52013	396	52013	-396	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGGACTCGGGATTGAG	NA	NA	NA	NA	NA	NA	NA	NA	72046244	72045318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_72045300_72046200
ONT_simulated_read_17098147	chr8	-	1763	1	ISM	ENSMUSG00000038069.7	ENSMUST00000038738.7	3464	3	1649	1177	1648	-1076	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAAGAACAAGAAGAGTT	NA	NA	NA	NA	NA	NA	NA	NA	48165318	48163555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_48163600_48165300
ONT_simulated_read_17098711	chr4	+	1109	3	ISM	ENSMUSG00000001089.15	ENSMUST00000105849.9	7438	4	42	8006	42	-5081	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATCAGGAAGACAACAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	136197113	136268624	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_136197162_136248651_136248755_136267666
ONT_simulated_read_17098866	chr16	-	837	3	ISM	ENSMUSG00000059003.13	ENST00000675398.1	4516	10	25	92704	25	-91932	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGAGACCTGCGTCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	9579824	9487622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_9487775_9525467_9525583_9579254
ONT_simulated_read_17099197	chrX	-	1371	7	ISM	ENSMUSG00000031386.15	ENSMUST00000114372.3	8262	26	18833	1443	18833	-1443	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGATTGGAAAGAACAGCGA	NA	NA	NA	NA	NA	NA	NA	NA	72991124	72987845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796
ONT_simulated_read_17101961	chr15	-	1532	6	ISM	ENSMUSG00000053137.8	ENSMUST00000088823.5	2461	12	3729	302	3729	-302	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGGACCTTGATTCAAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	89030102	89026991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_89028021_89028343_89028518_89028595_89028675_89029298_89029379_89029577_89029650_89030004
ONT_simulated_read_17102223	chr8	+	1666	1	FSM	ENSMUSG00000097084.2	ENSMUST00000181609.2	2705	1	0	1039	0	-1039	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTTGGCTTATAAACCAG	NA	NA	NA	NA	NA	NA	NA	NA	121854678	121856344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_121854700_121856300
ONT_simulated_read_17106043	chr6	-	919	8	ISM	ENSMUSG00000004266.16	ENST00000456013.5	2168	15	353	6434	312	-6406	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACTCTAAGACCTACAT	NA	NA	NA	NA	NA	NA	NA	NA	124709805	124704476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700
ONT_simulated_read_17108523	chr1	-	336	1	ISM	ENSMUSG00000057173.9	ENST00000428343.6	1649	11	52903	0	52903	0	mono-exon	FALSE	NA	NA	NA	NA	NA	222	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGTCTTGCCTCTTGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	39704796	39704460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_39704500_39704800
ONT_simulated_read_1711370	chr9	-	575	5	ISM	ENSMUSG00000003309.15	ENSMUST00000003397.9	1706	11	9546	973	2990	0	internal_fragment	FALSE	canonical	NA	NA	NA	NA	345	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAAGGTGGCAGGCCGGGC	NA	NA	NA	NA	NA	NA	NA	NA	21214061	21207729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21207805_21209495_21209622_21210574_21210734_21213751_21213824_21213918
ONT_simulated_read_17115688	chr17	-	478	1	ISM	ENSMUSG00000019579.14	ENSMUST00000019723.8	1710	6	6947	752	6947	-752	mono-exon	FALSE	NA	NA	NA	NA	NA	299	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCCTCTCCTAATAGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	56483973	56483495	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56483500_56484000
ONT_simulated_read_17116441	chr19	+	1107	8	ISM	ENSMUSG00000071646.10	ENSMUST00000096240.3	3135	18	0	5233	0	-5233	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCTCAATTCGGCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	8919238	8924434	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400
ONT_simulated_read_17116650	chr16	+	822	3	ISM	ENSMUSG00000022507.7	ENSMUST00000023150.7	4072	4	0	15800	0	-15800	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAACTCTAGAGCTCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	8647963	8660986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_8648550_8649184_8649266_8660831
ONT_simulated_read_17116911	chr10	+	647	5	ISM	ENSMUSG00000038822.16	ENSMUST00000037044.13	3785	24	94729	25611	94729	-25532	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGAAGAGCATGTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	45548653	45562830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_45548733_45548869_45548958_45552476_45552627_45553162_45553360_45562697
ONT_simulated_read_17122191	chr14	+	1179	6	ISM	ENSMUSG00000039367.12	ENST00000339365.2	4502	24	17338	751	17337	-751	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGAGGCAGCTGGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	20741747	20744156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
ONT_simulated_read_17122525	chr5	-	2966	13	ISM	ENSMUSG00000029576.18	ENSMUST00000110784.8	3106	14	1355	-25	1355	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTGGGGATGTAGGATCT	NA	NA	NA	NA	NA	NA	NA	NA	142494059	142470596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_142471004_142471167_142471308_142471609_142471747_142472509_142472862_142473201_142473393_142474157_142474309_142479982_142480156_142480490_142480729_142481080_142481194_142483592_142483754_142489667_142489706_142492213_142492844_142493824
ONT_simulated_read_17123216	chr1	-	754	1	ISM	ENSMUSG00000003458.13	ENSMUST00000003550.11	2901	17	16029	0	16029	0	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGTTTGGTATTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	171894333	171893579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_171893600_171894300
ONT_simulated_read_17124697	chr12	+	463	4	FSM	ENSMUSG00000042523.13	ENST00000554339.5	469	4	15	-9	-1	9	multi-exon	FALSE	canonical	NA	NA	NA	NA	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTCAGTGTTTATCCCA	NA	NA	NA	NA	NA	NA	NA	NA	84161163	84185312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_84161174_84182340_84182468_84183270_84183412_84185127
ONT_simulated_read_1712490	chr15	-	389	1	FSM	ENSMUSG00000047565.6	ENSMUST00000052910.6	1537	1	0	1148	0	-1148	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTACGAGACAAATATGTG	NA	NA	NA	NA	NA	NA	NA	NA	20666836	20666447	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_20666400_20666800
ONT_simulated_read_17128036	chr2	-	976	5	ISM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	3576	327	-7	191	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAGAGAACCTGTAAAATT	NA	NA	NA	NA	NA	NA	NA	NA	174311298	174307186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129
ONT_simulated_read_17128049	chr10	-	2301	8	ISM	ENSMUSG00000036112.16	ENST00000261220.13	1817	10	10069	-766	10069	766	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGAAGTTTTCCGGG	NA	NA	NA	NA	NA	NA	NA	NA	93715504	93696022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401
ONT_simulated_read_17133039	chr4	+	1156	1	FSM	ENSMUSG00000074738.3	ENSMUST00000099265.3	2140	1	0	984	0	-984	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATCATGAACCTGAACTT	NA	NA	NA	NA	NA	NA	NA	NA	155778798	155779954	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_155778800_155780000
ONT_simulated_read_17135363	chr9	-	361	3	ISM	ENSMUSG00000004771.13	ENSMUST00000172298.8	2336	5	10941	1604	10806	40	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCCGCCCACCACTGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	64634099	64624184	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_64624271_64632783_64632865_64633905
ONT_simulated_read_17135816	chr13	-	974	4	ISM	ENSMUSG00000021638.13	ENSMUST00000160859.8	2443	9	40866	246	29563	-246	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	327	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTGTAGCCCTGGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	100648123	100634867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919
ONT_simulated_read_17135892	chr11	-	268	1	ISM	ENSMUSG00000000538.19	ENSMUST00000095254.12	4940	14	122689	3235	50065	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1298	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTTGCCACCTTCTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	60121042	60120774	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_60120800_60121000
ONT_simulated_read_17136739	chr13	-	808	6	ISM	ENSMUSG00000034675.18	ENSMUST00000109921.9	2378	14	6378	1355	6378	-1355	internal_fragment	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACACCATTGAGACCACCA	NA	NA	NA	NA	NA	NA	NA	NA	55629496	55623111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_55623350_55623958_55624130_55625363_55625494_55625589_55625650_55629161_55629226_55629351
ONT_simulated_read_17137588	chr7	-	390	4	ISM	ENSMUSG00000003099.12	ENST00000391919.1	1878	12	19117	2272	19117	-2272	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCAGCCCCCAGACTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	16742610	16740850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_16740920_16741028_16741172_16741650_16741757_16742538
ONT_simulated_read_17142627	chr5	-	521	1	ISM	ENSMUSG00000029103.17	ENSMUST00000030986.15	2981	8	12410	1335	12410	-1335	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATCTGGCCCCAGACAGT	NA	NA	NA	NA	NA	NA	NA	NA	35250700	35250179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_35250200_35250700
ONT_simulated_read_17143265	chr17	-	633	1	ISM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	17055	373	17055	-373	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCAGCTGGCACGTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	79227440	79226807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_79226800_79227400
ONT_simulated_read_17144700	chrX	-	824	7	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	97361	8525	97361	-8525	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAGATAGAAAAGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	40903417	40892392	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_40892410_40895278_40895440_40895521_40895592_40895910_40896049_40901335_40901372_40902826_40902886_40903074
ONT_simulated_read_17146064	chr10	-	516	1	ISM	ENSMUSG00000034591.6	ENSMUST00000039956.6	4742	11	104158	2361	104158	-2361	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTAGCCTTGTCTTACA	NA	NA	NA	NA	NA	NA	NA	NA	83069588	83069072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_83069100_83069600
ONT_simulated_read_17147702	chr4	-	196	2	ISM	ENSMUSG00000028495.15	ENSMUST00000102814.5	878	5	1088	1337	1088	-1337	internal_fragment	FALSE	canonical	NA	NA	NA	NA	636	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTGACAGACACTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	86774561	86774233	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_86774251_86774382
ONT_simulated_read_17147851	chr9	-	2149	13	ISM	ENSMUSG00000034684.13	ENSMUST00000192727.6	2383	18	15794	-346	15794	346	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTGCTGATGCGCGTT	NA	NA	NA	NA	NA	NA	NA	NA	107566961	107559270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_107560039_107560758_107560893_107561171_107561240_107561420_107561579_107561748_107561791_107561886_107561976_107562523_107562747_107564388_107564534_107564688_107564759_107564928_107565044_107565147_107565288_107565428_107565549_107566884
ONT_simulated_read_17152275	chr7	-	115	1	ISM	ENSMUSG00000030754.10	ENSMUST00000033012.9	3346	22	38796	242	38796	-242	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCATGCTTTATGTTAT	NA	NA	NA	NA	NA	NA	NA	NA	113815150	113815035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_113815000_113815200
ONT_simulated_read_17152381	chr9	-	2412	5	ISM	ENSMUSG00000066829.8	ENSMUST00000086278.7	3238	8	17004	544	17004	-544	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTATGAAAGTGAAAACACAT	NA	NA	NA	NA	NA	NA	NA	NA	22201930	22188587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_22190577_22191748_22191856_22194463_22194557_22195312_22195440_22201834
ONT_simulated_read_1715330	chr2	-	1855	7	ISM	ENSMUSG00000026836.16	ENSMUST00000112599.8	2891	10	38470	435	38470	280	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	398	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTTTGTTTGAAACCGCCT	NA	NA	NA	NA	NA	NA	NA	NA	58367814	58336880	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_58337686_58338325_58338457_58348896_58349095_58352892_58353169_58358525_58358673_58364184_58364285_58367616
ONT_simulated_read_17156753	chr4	+	580	7	ISM	ENSMUSG00000028601.19	ENSMUST00000116309.10	1238	11	52	5278	0	-5039	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGAGCTCATCTTCACAG	NA	NA	NA	NA	NA	NA	NA	NA	108022714	108031226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183
ONT_simulated_read_17157685	chr1	-	1687	7	ISM	ENSMUSG00000026249.11	ENSMUST00000027467.11	2210	9	41740	57	41740	-57	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATTTTTGTATTTTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	79794673	79771970	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_79772760_79774542_79774627_79777184_79777272_79779172_79779274_79780563_79780763_79788270_79788469_79794444
ONT_simulated_read_17160008	chr4	-	283	3	ISM	ENSMUSG00000028494.13	ENSMUST00000000466.13	1888	8	1537	5606	1537	-5606	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGACGACTACCATGGCT	NA	NA	NA	NA	NA	NA	NA	NA	86586760	86580407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_86580451_86582665_86582749_86586603
ONT_simulated_read_17162553	chr13	+	522	5	ISM	ENSMUSG00000021518.5	ENSMUST00000021990.4	3424	13	43937	1196	43937	-1196	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGTAAGTCTTGTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	67124830	67145269	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_67124876_67135817_67135918_67142016_67142086_67143410_67143481_67145031
ONT_simulated_read_1716407	chr1	-	1632	1	ISM	ENSMUSG00000032997.17	ENSMUST00000079205.14	2892	4	3064	7	3064	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATAATGAGTGGAAACTG	NA	NA	NA	NA	NA	NA	NA	NA	75452851	75451219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_75451200_75452900
ONT_simulated_read_17164161	chr3	-	430	4	ISM	ENSMUSG00000042997.14	ENST00000379599.6	707	5	13	1156	13	-1156	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAGGAGCATGGGACAACT	NA	NA	NA	NA	NA	NA	NA	NA	53369860	53361013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_53361076_53363846_53363939_53369052_53369201_53369732
ONT_simulated_read_17165374	chr6	+	941	8	ISM	ENSMUSG00000052337.16	ENSMUST00000114151.10	2518	13	22	12775	14	-12448	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTCTTTAGTCTTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	71808415	71839466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71833895_71834033_71837986_71838091_71839328
ONT_simulated_read_17165983	chr11	-	704	5	ISM	ENSMUSG00000000753.16	ENST00000254722.9	1250	7	1583	879	1583	-879	internal_fragment	TRUE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTATGAGCATCATCTTC	NA	NA	NA	NA	NA	NA	NA	NA	75307234	75301848	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_75301871_75304732_75304876_75305746_75305951_75306400_75306557_75307055
ONT_simulated_read_17167352	chr17	-	546	1	NIC	ENSMUSG00000118135.2	novel	757	4	NA	NA	247	-4367	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGTGAGCTGGTAGAATA	NA	NA	NA	NA	NA	NA	NA	NA	26014386	26013840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_26013800_26014400
ONT_simulated_read_17167548	chr2	-	1366	1	ISM	ENSMUSG00000026761.13	ENSMUST00000028098.11	4066	14	43698	1389	43656	1197	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGAAGCTGTAATATCA	NA	NA	NA	NA	NA	NA	NA	NA	48795590	48794224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_48794200_48795600
ONT_simulated_read_17167781	chr10	-	2110	15	ISM	ENSMUSG00000037012.19	ENSMUST00000072357.14	3639	20	59109	2658	41289	-1857	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGTGCGACGACAGTATCC	NA	NA	NA	NA	NA	NA	NA	NA	62135032	62107544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62127753_62127823_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928
ONT_simulated_read_1717135	chr12	+	1671	13	ISM	ENSMUSG00000021288.20	ENSMUST00000120544.9	2261	14	0	1227	0	-1227	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTTAAATGACTTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	111738752	111760102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755921_111760082
ONT_simulated_read_17173215	chrX	-	495	1	ISM	ENSMUSG00000072955.15	ENSMUST00000127404.8	816	4	21387	0	21387	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTTGAGCAGATTGCACA	NA	NA	NA	NA	NA	NA	NA	NA	135856231	135855736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_135855700_135856200
ONT_simulated_read_17174708	chr11	-	1902	1	ISM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	6276	0	6276	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2234	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTCATTTATTTATTC	NA	NA	NA	NA	NA	NA	NA	NA	106673082	106671180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106671200_106673100
ONT_simulated_read_17175003	chr9	+	727	10	ISM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	5057	21919	5057	-21919	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGGTGCCAGTTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	86909123	86937908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817
ONT_simulated_read_1717502	chr11	+	341	2	ISM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	6862	2857	6862	-2857	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCACCAAGATGGTCATA	NA	NA	NA	NA	NA	NA	NA	NA	72339042	72339737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_72339204_72339557
ONT_simulated_read_17176334	chr6	-	509	1	ISM	ENSMUSG00000029840.9	ENSMUST00000031866.9	3960	4	27589	2885	27589	-2885	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGATAAGCAATTAGCTATA	NA	NA	NA	NA	NA	NA	NA	NA	35489234	35488725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_35488700_35489200
ONT_simulated_read_17176782	chr2	-	750	1	ISM	ENSMUSG00000053916.5	ENSMUST00000066640.5	1394	2	8529	435	8529	-435	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTGCTGCTGTTGATAA	NA	NA	NA	NA	NA	NA	NA	NA	150872789	150872039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_150872000_150872800
ONT_simulated_read_17178185	chr1	-	1303	1	ISM	ENSMUSG00000026196.8	ENSMUST00000027393.8	5659	11	72301	2045	72301	-2045	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTCTCCTTTCCTCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	71070004	71068701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_71068700_71070000
ONT_simulated_read_17181458	chr18	-	644	4	ISM	ENSMUSG00000024420.10	ENSMUST00000234410.2	5032	7	154400	496	154400	-1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTCAAAGTGAACAAAATGG	NA	NA	NA	NA	NA	NA	NA	NA	13950377	13821768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_13822082_13848197_13848314_13850672_13850805_13950294
ONT_simulated_read_17183905	chr14	-	247	2	ISM	ENSMUSG00000023110.13	ENST00000553897.5	1830	16	6362	2066	6315	-2066	internal_fragment	FALSE	canonical	NA	NA	NA	NA	1037	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGGACCGCGATCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	54748493	54747311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_54747401_54748335
ONT_simulated_read_17189582	chr19	-	641	3	ISM	ENSMUSG00000024736.16	ENSMUST00000120524.2	3895	10	4209	5650	4209	-5650	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATCCCTCTGGCCAAGG	NA	NA	NA	NA	NA	NA	NA	NA	10842933	10840847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_10841025_10841318_10841469_10842619
ONT_simulated_read_1719129	chr13	+	1086	7	ISM	ENSMUSG00000021610.9	ENSMUST00000022102.9	2340	17	0	8929	0	-8906	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTCTTAGCATTGACCT	NA	NA	NA	NA	NA	NA	NA	NA	73752124	73759795	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_73752519_73753048_73753150_73754340_73754531_73755838_73755988_73757022_73757102_73759262_73759381_73759740
ONT_simulated_read_17193685	chr15	-	2879	1	ISM	ENSMUSG00000022594.15	ENSMUST00000023259.15	4023	4	1619	697	1619	-697	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCTAGAGTTGCAATCTG	NA	NA	NA	NA	NA	NA	NA	NA	74623276	74620397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_74620400_74623300
ONT_simulated_read_17195077	chr13	-	2867	12	ISM	ENSMUSG00000034152.7	ENSMUST00000035934.7	4922	13	1616	1999	1616	-1999	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCCTCTGGAACTCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	74355212	74319605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_74320364_74321414_74321543_74322105_74322268_74328553_74328677_74330162_74330314_74330395_74330507_74332791_74332893_74337279_74337406_74338188_74338307_74340726_74341409_74347574_74347795_74355025
ONT_simulated_read_17197849	chr7	-	2119	5	ISM	ENSMUSG00000042502.11	ENSMUST00000206026.2	2906	7	780	656	717	-627	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGGTACCTGGCATCTT	NA	NA	NA	NA	NA	NA	NA	NA	126794330	126791823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194
ONT_simulated_read_17198191	chr1	-	487	1	NIC	ENSMUSG00000026558.14	novel	4731	7	NA	NA	58798	-3153	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATAAGTATCCTGTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	167054091	167053604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_167053600_167054100
ONT_simulated_read_17198517	chr8	-	290	1	ISM	ENSMUSG00000038143.17	ENSMUST00000079195.6	10467	4	102833	6232	16705	2	mono-exon	FALSE	NA	NA	NA	NA	NA	1091	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACAGGTTGGGGGTTACTT	NA	NA	NA	NA	NA	NA	NA	NA	47639604	47639314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_47639300_47639600
ONT_simulated_read_17200435	chr9	-	508	5	NIC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	34252	-5687	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTACTTGTTCTACTT	NA	NA	NA	NA	NA	NA	NA	NA	108492327	108485827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_108485953_108487095_108487147_108488831_108488950_108490924_108491035_108492223
ONT_simulated_read_17203619	chr3	-	1764	10	ISM	ENSMUSG00000028163.18	ENSMUST00000164430.7	3007	23	64003	-306	64003	306	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTTGTGCATTCAAATT	NA	NA	NA	NA	NA	NA	NA	NA	135309557	135290732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_135291277_135295087_135295266_135296076_135296250_135296540_135296608_135297314_135297440_135299591_135299695_135299969_135300140_135300625_135300828_135307186_135307302_135309470
ONT_simulated_read_17206205	chr5	-	1270	8	ISM	ENSMUSG00000045302.14	ENSMUST00000074840.12	6300	9	948	4640	753	-430	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGGAGCTCTTGCCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	31116757	31112836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566
ONT_simulated_read_1720755	chr19	-	1893	12	ISM	ENSMUSG00000024777.11	ENST00000164133.7	2710	14	1891	0	1891	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGCTTGCTTTATTGAG	NA	NA	NA	NA	NA	NA	NA	NA	6283982	6277794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6278562_6278971_6279074_6279251_6279380_6280185_6280306_6280415_6280467_6280531_6280586_6280936_6281046_6281145_6281206_6282299_6282431_6282557_6282651_6282796_6282899_6283806
ONT_simulated_read_1720885	chr12	-	609	1	FSM	ENSMUSG00000049751.7	ENSMUST00000110619.2	1276	1	27	640	0	-637	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGCTTGAAGTGGTAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	69230760	69230151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_69230200_69230800
ONT_simulated_read_17208952	chr3	+	232	1	ISM	ENSMUSG00000027827.18	ENST00000618897.4	3652	13	501	268593	0	-267265	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCTGAAGTCAGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	65016804	65017036	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_65016800_65017000
ONT_simulated_read_17211285	chr8	-	353	4	ISM	ENSMUSG00000055553.17	ENSMUST00000118850.8	992	5	3232	523	3054	-172	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCCCACCCAGTATCACC	NA	NA	NA	NA	NA	NA	NA	NA	70972697	70966776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586
ONT_simulated_read_17213470	chr17	-	450	5	ISM	ENSMUSG00000051977.17	ENSMUST00000167994.10	3438	10	380	12562	21	-2417	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTACAGGCTGCGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	15783183	15775902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_15775930_15777562_15777720_15779284_15779335_15782676_15782785_15783075
ONT_simulated_read_17216475	chr12	-	209	1	NIC	ENSMUSG00000021094.11	novel	1385	7	NA	NA	14291	-57	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCCTTTGTACAAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	72697392	72697183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_72697200_72697400
ONT_simulated_read_17216681	chr14	-	328	1	FSM	ENSMUSG00000115143.2	ENSMUST00000227724.2	328	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGTGGCCTCCTCCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	76874304	76873976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_76874000_76874300
ONT_simulated_read_17220481	chr15	-	840	1	ISM	ENSMUSG00000022992.18	ENSMUST00000230542.2	3596	10	14717	1050	14697	100	mono-exon	FALSE	NA	NA	NA	NA	NA	521	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGAGGTGGTGCTTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	98417428	98416588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_98416600_98417400
ONT_simulated_read_17222316	chr11	-	1041	1	ISM	ENSMUSG00000042148.9	ENSMUST00000049091.9	2915	7	115219	580	115216	-580	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGTCCAGAAGTTGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	63855073	63854032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_63854000_63855100
ONT_simulated_read_17225288	chr9	-	1781	14	ISM	ENSMUSG00000032312.8	ENSMUST00000215396.2	2390	15	1669	224	1669	-204	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGACCCACCTATAGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	57559245	57534419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57541277_57541329_57559114
ONT_simulated_read_17226077	chr1	-	4231	1	ISM	ENSMUSG00000052534.16	ENSMUST00000176540.8	6876	9	273080	1045	178008	-1045	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATATTGAAAAGAAAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	167986386	167982155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_167982200_167986400
ONT_simulated_read_17228295	chr6	+	1654	2	ISM	ENSMUSG00000029683.8	ENSMUST00000031694.8	1976	3	0	854	0	-854	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGACAGCTCCCGACCCTC	NA	NA	NA	NA	NA	NA	NA	NA	24597760	24604559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_24598155_24603299
ONT_simulated_read_1722846	chr17	-	386	1	NIC	ENSMUSG00000040260.9	novel	3380	24	NA	NA	40138	0	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTGAAAGAGGGGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	49765776	49765390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_49765400_49765800
ONT_simulated_read_17229236	chr15	-	453	1	ISM	ENSMUSG00000000555.9	ENSMUST00000023128.8	4382	30	21413	612	21413	-612	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCAAAGATGCATCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	103253777	103253324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_103253300_103253800
ONT_simulated_read_17229487	chr12	+	814	7	ISM	ENSMUSG00000073079.7	ENST00000546080.6	2035	14	78	11816	17	-11440	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGACGGTCATGCGAAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	55127310	55148236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_55127522_55135954_55136065_55142599_55142705_55143893_55143961_55144040_55144099_55146697_55146849_55148124
ONT_simulated_read_17231383	chrX	-	1842	13	ISM	ENSMUSG00000031229.17	ENSMUST00000113573.8	10275	35	77335	28529	-6057	-28529	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGAAATTCTTCGAATG	NA	NA	NA	NA	NA	NA	NA	NA	104895674	104869749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_104869861_104874453_104874627_104874800_104874881_104876052_104876184_104879915_104880034_104881844_104882021_104883446_104883585_104889102_104889281_104889400_104889548_104890291_104890402_104891187_104891330_104894642_104894877_104895570
ONT_simulated_read_17233864	chr2	-	279	1	NIC	ENSMUSG00000026650.16	novel	643	4	NA	NA	9257	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGTCCAGTTATCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	3410361	3410082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_3410100_3410400
ONT_simulated_read_172340	chr8	-	624	7	ISM	ENSMUSG00000031591.15	ENST00000636128.1	751	8	854	-1	854	1	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	203	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGAGGACGTACTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	41807096	41794618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41804930_41805010_41807050
ONT_simulated_read_1723566	chr9	-	1229	7	ISM	ENSMUSG00000059890.17	ENST00000252108.8	5847	20	7024	23156	7024	-230	internal_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCCAGATCCTCCCGGC	NA	NA	NA	NA	NA	NA	NA	NA	44864414	44857582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239
ONT_simulated_read_17240563	chr11	-	730	5	ISM	ENSMUSG00000020530.15	ENSMUST00000100686.10	2275	14	9949	7398	9855	-7398	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCTTTATGAACGACTGC	NA	NA	NA	NA	NA	NA	NA	NA	84751617	84731195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370
ONT_simulated_read_17242671	chr17	+	1001	7	ISM	ENSMUSG00000041354.17	ENSMUST00000047503.16	3252	18	322	4628	322	-4628	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGAGACCGGCCAGGACA	NA	NA	NA	NA	NA	NA	NA	NA	34148877	34152033	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34149019_34149218_34149416_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34151726_34151982
ONT_simulated_read_17243059	chr12	+	1830	11	ISM	ENSMUSG00000018707.14	ENST00000644881.2	14073	77	38921	16823	38921	-16823	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGCAATTTGGGGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	110606957	110616413	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_110607167_110607252_110607460_110607535_110607658_110608444_110608611_110609556_110609721_110612627_110612758_110614694_110614829_110615433_110615549_110615648_110615811_110615895_110616111_110616207
ONT_simulated_read_17243270	chr5	+	541	4	ISM	ENSMUSG00000029577.14	ENST00000342494.8	3424	28	17603	17053	17603	-17053	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGCAACATTTGCGTGC	NA	NA	NA	NA	NA	NA	NA	NA	114536844	114540676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_114536944_114537850_114538029_114539328_114539499_114540582
ONT_simulated_read_17244284	chr10	-	496	4	ISM	ENSMUSG00000061904.13	ENSMUST00000170810.8	1341	8	297	2047	-9	649	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCCAGTGCTGAATTCTT	NA	NA	NA	NA	NA	NA	NA	NA	90959568	90954700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_90954743_90955388_90955569_90958068_90958194_90959419
ONT_simulated_read_17246178	chr13	-	643	1	ISM	ENSMUSG00000114172.2	ENSMUST00000223394.2	1732	3	1838	886	1838	-886	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGGTAATCTCCAAATTC	NA	NA	NA	NA	NA	NA	NA	NA	62789228	62788585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_62788600_62789200
ONT_simulated_read_17248531	chr10	+	1071	7	NIC	ENSMUSG00000019977.17	novel	2793	18	NA	NA	0	8111	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGCTATTTTAGCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	21171916	21221094	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_+_21172076_21175076_21175143_21183483_21183679_21212874_21212975_21217612_21217879_21218297_21218464_21220975
ONT_simulated_read_17250567	chr3	+	420	4	ISM	ENSMUSG00000068744.13	ENSMUST00000090561.10	1686	8	40	2946	20	-2946	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCGGGAGACCTTCGTCC	NA	NA	NA	NA	NA	NA	NA	NA	108291194	108292549	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_108291243_108291551_108291602_108291689_108291748_108292285
ONT_simulated_read_17251752	chr5	-	1378	5	ISM	ENSMUSG00000029475.18	ENSMUST00000031435.14	3532	12	19543	1037	19543	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTAAATATGGAGGGTT	NA	NA	NA	NA	NA	NA	NA	NA	123018875	123009767	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235
ONT_simulated_read_17253006	chr1	+	209	2	ISM	ENSMUSG00000026199.18	ENSMUST00000152233.9	2739	13	6343	541	6311	-541	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTTGCTAGTGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	75175146	75175490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_75175289_75175423
ONT_simulated_read_17253269	chr14	+	602	6	ISM	ENSMUSG00000022212.16	ENSMUST00000171643.2	2016	15	0	3603	0	-3603	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGCTGGGAGCCATTCC	NA	NA	NA	NA	NA	NA	NA	NA	55749441	55751283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_55749610_55750038_55750219_55750628_55750704_55750844_55750920_55751090_55751175_55751263
ONT_simulated_read_17254300	chr9	+	2063	14	ISM	ENSMUSG00000032409.16	ENST00000661310.1	7777	46	57254	8978	57254	-8960	internal_fragment	TRUE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATACTGCTGGCTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	95797026	95824737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_95797155_95798482_95798575_95802397_95802490_95802719_95802898_95803705_95803886_95804800_95804961_95809221_95809402_95814382_95814526_95817531_95817630_95818347_95818581_95819566_95819702_95821202_95821404_95822922_95823067_95824638
ONT_simulated_read_17254412	chr2	-	2949	11	ISM	ENSMUSG00000026918.17	ENSMUST00000028282.15	5419	12	11210	2208	-72	56	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAACAAACCTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	27354200	27337798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900
ONT_simulated_read_17257600	chr12	-	353	4	ISM	ENSMUSG00000002799.7	ENST00000347004.2	5014	25	13872	6709	13783	-6671	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCAAGCCCCTGCCTCAA	NA	NA	NA	NA	NA	NA	NA	NA	112879613	112878109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_112878128_112878817_112878992_112879090_112879138_112879499
ONT_simulated_read_17260955	chr9	+	486	4	ISM	ENSMUSG00000006932.18	ENST00000643992.1	2827	16	20	9078	17	-8843	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCCATGTTCCCTGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	120762551	120780003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_120762705_120779238_120779300_120779587_120779816_120779959
ONT_simulated_read_17264585	chr15	-	538	1	ISM	ENSMUSG00000064284.13	ENSMUST00000071876.13	997	5	4187	0	3581	0	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	NA	NA	NA	NA	NA	NA	NA	NA	85691710	85691172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_85691200_85691700
ONT_simulated_read_1726670	chr5	+	122	1	ISM	ENSMUSG00000013622.16	ENSMUST00000013766.13	966	7	0	5867	0	-5637	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACAGAAGAAAGTTTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	31205978	31206100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31206000_31206100
ONT_simulated_read_17266857	chr18	-	898	1	ISM	ENSMUSG00000024501.21	ENSMUST00000121805.9	5479	14	113890	2515	48876	728	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTCTATTTAGGGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	43457461	43456563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_43456600_43457500
ONT_simulated_read_17271001	chr5	-	5329	13	ISM	ENSMUSG00000039477.17	ENSMUST00000151477.8	6487	16	28929	184	-1387	-184	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGCTTGCCCAAGGAACA	NA	NA	NA	NA	NA	NA	NA	NA	142774488	142740727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_142741415_142745465_142745827_142748744_142748917_142750523_142750653_142750805_142750943_142751667_142751844_142757059_142758059_142759373_142759801_142760963_142761155_142761583_142761731_142761930_142762137_142762400_142762498_142772888
ONT_simulated_read_17273743	chr9	-	1325	1	ISM	ENSMUSG00000037419.10	ENSMUST00000167549.2	4470	2	23386	2542	23127	-2542	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAAATGTTCAGGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	14269152	14267827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_14267800_14269200
ONT_simulated_read_17278874	chr4	-	429	1	ISM	ENSMUSG00000028538.13	ENSMUST00000030263.9	2549	12	201765	543	174538	-277	mono-exon	FALSE	NA	NA	NA	NA	NA	4047	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTTTAAATTAGATGT	NA	NA	NA	NA	NA	NA	NA	NA	117790322	117789893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_117789900_117790300
ONT_simulated_read_17279085	chr7	-	336	3	ISM	ENSMUSG00000043262.17	ENSMUST00000094398.13	4616	12	13202	16950	13202	-16950	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACGCTGTCTTGCTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	46595073	46589913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_46590052_46593535_46593639_46594978
ONT_simulated_read_17279091	chr14	-	425	1	ISM	ENSMUSG00000049960.5	ENSMUST00000061444.5	2572	3	2195	1711	2195	-1711	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGAGTGTTCTTGGCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	20441507	20441082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20441100_20441500
ONT_simulated_read_1728036	chr11	-	1644	7	ISM	ENSMUSG00000020740.14	ENSMUST00000019135.14	3816	17	15541	1007	6484	-444	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGTGGCCCAGAGTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	115479336	115476087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137
ONT_simulated_read_17280663	chr1	+	594	5	ISM	ENSMUSG00000026429.10	ENSMUST00000027687.8	1116	7	26	2212	26	-2210	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCTCATGGCAGAACCCA	NA	NA	NA	NA	NA	NA	NA	NA	134890328	134899688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_134890525_134895464_134895637_134896978_134897049_134898987_134899094_134899638
ONT_simulated_read_17281229	chr18	+	1095	1	ISM	ENSMUSG00000103088.2	ENSMUST00000003599.9	4684	4	0	98685	0	-20842	mono-exon	FALSE	NA	NA	NA	NA	NA	227	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGAAGTAGAAGCGAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	37875146	37876241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_37875100_37876200
ONT_simulated_read_17281410	chr3	-	902	1	FSM	ENSMUSG00000104773.3	ENSMUST00000196051.3	57	1	-596	-249	-596	249	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAACTCAGTGGAGGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	122335926	122335024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_122335000_122335900
ONT_simulated_read_17282067	chr9	-	1137	1	ISM	ENSMUSG00000032468.12	ENSMUST00000035043.12	4647	22	88146	1245	87896	1094	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTGCTGGGAGACTAG	NA	NA	NA	NA	NA	NA	NA	NA	99362806	99361669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_99361700_99362800
ONT_simulated_read_17282352	chr17	+	410	3	ISM	ENSMUSG00000006705.14	ENSMUST00000237748.2	1238	8	11010	270	11010	-270	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGACGAGTCGGTGGATA	NA	NA	NA	NA	NA	NA	NA	NA	31821711	31823838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_31821837_31822160_31822334_31823726
ONT_simulated_read_17282358	chr14	-	252	1	ISM	ENSMUSG00000022013.5	ENSMUST00000226459.2	6193	6	48466	5528	48466	-5528	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTTTTCCACATCATTT	NA	NA	NA	NA	NA	NA	NA	NA	78063900	78063648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_78063600_78063900
ONT_simulated_read_17283081	chr10	-	1666	3	ISM	ENSMUSG00000037855.16	ENSMUST00000064656.8	4259	5	15084	1506	15084	-1506	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTAAAAAATCTCCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	67733408	67723438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_67724922_67725782_67725821_67733263
ONT_simulated_read_17284413	chrM	+	458	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	0	223	0	-223	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCATTAGCAGTCCGGC	NA	NA	NA	NA	NA	NA	NA	NA	7926	8384	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrM_+_7900_8400
ONT_simulated_read_17287691	chr11	-	1093	7	ISM	ENSMUSG00000041278.11	ENSMUST00000048578.3	1438	8	2534	285	2534	-273	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	362	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTAATTTCCATTTTAAGG	NA	NA	NA	NA	NA	NA	NA	NA	43636275	43621120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_43621435_43627245_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911
ONT_simulated_read_17288213	chr3	-	398	4	ISM	ENSMUSG00000027770.6	ENST00000308361.10	3334	24	22595	7562	22595	-7562	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCCATTTAGCCCGACT	NA	NA	NA	NA	NA	NA	NA	NA	62391696	62385064	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_62385101_62386740_62386840_62388222_62388341_62391551
ONT_simulated_read_17292153	chr4	-	424	4	ISM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	20555	26941	20521	2870	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAGCCCACACAAACAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	56844633	56837875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_56837903_56838965_56839056_56841560_56841681_56844446
ONT_simulated_read_17292967	chr11	+	853	1	ISM	ENSMUSG00000025161.17	ENSMUST00000168579.8	4335	6	10182	753	10182	-753	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGGAAGACTTAAGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	120850088	120850941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_120850100_120850900
ONT_simulated_read_17293970	chr5	+	843	8	ISM	ENSMUSG00000062761.8	ENSMUST00000202244.4	3045	13	-36	11295	-36	-11295	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAAGAGCCGAGGCGGCA	NA	NA	NA	NA	NA	NA	NA	NA	31609823	31627798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31609922_31610498_31610558_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701
ONT_simulated_read_17294645	chr18	-	446	6	ISM	ENSMUSG00000024493.10	ENST00000674191.1	3133	28	7497	32174	7497	-32174	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATGAGCTGAAAATTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	42376951	42367733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42376031_42376096_42376841
ONT_simulated_read_17296475	chr5	-	1520	1	ISM	ENSMUSG00000029156.12	ENSMUST00000081170.9	3786	6	12092	1430	12092	-1430	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAACCTTGATCTCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	73793041	73791521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_73791500_73793000
ONT_simulated_read_17296731	chr7	-	1641	13	NNC	ENSMUSG00000002968.10	novel	2619	18	NA	NA	6896	-58	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGCGTCATGGAGGACGA	NA	NA	NA	NA	NA	NA	NA	NA	44534892	44528882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_44528939_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533675_44533986_44534181_44534256_44534345_44534503_44534635_44534762
ONT_simulated_read_17297237	chr3	+	732	6	ISM	ENSMUSG00000028047.12	ENST00000541990.5	2763	20	7650	33	7650	-33	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	537	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCCAGGGAAGAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	89131636	89133870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89131772_89131883_89131933_89132116_89132314_89132558_89132732_89133610_89133751_89133832
ONT_simulated_read_1729733	chr5	+	651	3	ISM	ENSMUSG00000029659.17	ENSMUST00000093110.12	2953	5	23	4733	23	-4712	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAGGGATGGACATGGTC	NA	NA	NA	NA	NA	NA	NA	NA	149335236	149350455	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_149335721_149345598_149345709_149350398
ONT_simulated_read_172977	chr10	+	1354	1	ISM	ENSMUSG00000020185.17	ENSMUST00000174857.8	2865	3	8867	952	8760	-952	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCCCAGAGACACACCTCC	NA	NA	NA	NA	NA	NA	NA	NA	110590192	110591546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_110590200_110591500
ONT_simulated_read_1729849	chr9	+	438	1	ISM	ENSMUSG00000031963.9	ENSMUST00000071982.7	3791	15	0	261687	0	-261398	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGCCTCCCTCAGCCGAC	NA	NA	NA	NA	NA	NA	NA	NA	23134371	23134809	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_23134400_23134800
ONT_simulated_read_17300402	chr14	-	1009	1	ISM	ENSMUSG00000037824.7	ENSMUST00000047652.6	2475	9	58709	645	26181	-597	mono-exon	FALSE	NA	NA	NA	NA	NA	356	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAGGGAGCCCCAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	40630055	40629046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_40629000_40630100
ONT_simulated_read_17301306	chr6	-	317	5	ISM	ENSMUSG00000033420.13	ENST00000409349.7	1022	14	29644	38711	29644	-38711	internal_fragment	TRUE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGACGGCCTGTCCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	87259731	87217986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_87218011_87219468_87219539_87232764_87232864_87246224_87246286_87259668
ONT_simulated_read_17303151	chr3	-	1687	7	ISM	ENSMUSG00000074238.7	ENSMUST00000200409.5	2580	9	14890	492	14878	-487	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTCACTTTGGCAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	127616282	127601147	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_127602403_127605864_127605994_127606182_127606257_127606888_127606945_127610558_127610656_127614408_127614435_127616232
ONT_simulated_read_17310739	chr10	-	947	1	ISM	ENSMUSG00000062075.14	ENSMUST00000057623.14	3531	12	15369	727	3536	-566	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGAGCTGCCACAACTGG	NA	NA	NA	NA	NA	NA	NA	NA	80738710	80737763	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80737800_80738700
ONT_simulated_read_17311428	chr12	+	752	8	ISM	ENSMUSG00000021144.15	ENSMUST00000109726.8	2775	20	45	9537	0	-9504	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGCACATGAGTGCCGC	NA	NA	NA	NA	NA	NA	NA	NA	113061942	113091289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_113062066_113075765_113075834_113080607_113080702_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234
ONT_simulated_read_17311575	chr18	-	635	1	ISM	ENSMUSG00000024304.15	ENSMUST00000025166.14	4843	16	218916	819	79739	-673	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGATTTTGTTACCTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	16723387	16722752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_16722800_16723400
ONT_simulated_read_17312592	chr1	-	1155	1	ISM	ENSMUSG00000040225.16	ENSMUST00000182149.8	11289	35	66872	1774	66828	390	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTCACACCATCCTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	162501222	162500067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_162500100_162501200
ONT_simulated_read_17313968	chrX	-	280	1	ISM	ENSMUSG00000071708.12	ENSMUST00000112529.8	3717	11	46148	2005	46148	-2005	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTTTGGGTTTTCATTTT	NA	NA	NA	NA	NA	NA	NA	NA	156229135	156228855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_156228900_156229100
ONT_simulated_read_1731588	chr6	-	2108	1	NIC	ENSMUSG00000030256.12	novel	6133	5	NA	NA	1563	1873	mono-exon	FALSE	NA	NA	NA	NA	NA	240	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCTGTGTTTAAACAACGT	NA	NA	NA	NA	NA	NA	NA	NA	145809465	145807357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_145807400_145809500
ONT_simulated_read_17316006	chr3	+	908	9	ISM	ENSMUSG00000034544.18	ENSMUST00000162036.8	1406	10	51	1041	51	-1040	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCATCCGCAGCTGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	66888773	67262851	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_66888876_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806
ONT_simulated_read_17321747	chr14	-	684	1	ISM	ENSMUSG00000037580.11	ENSMUST00000089959.7	2775	6	33526	1309	33378	-1294	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGTTAAAAAGACAAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	47393344	47392660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_47392700_47393300
ONT_simulated_read_17322044	chr14	-	401	3	ISM	ENSMUSG00000063142.16	ENST00000404771.8	3505	29	494044	14	202276	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCAGGAGACCAGAACTA	NA	NA	NA	NA	NA	NA	NA	NA	23359327	23349958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_23350111_23356792_23356822_23359107
ONT_simulated_read_17322419	chr6	+	431	1	FSM	ENSMUSG00000057696.5	ENSMUST00000119767.2	348	1	0	-83	0	83	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAACATTCTCCCAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	38353741	38354172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_38353700_38354200
ONT_simulated_read_17323680	chr5	-	206	1	ISM	ENSMUSG00000059518.15	ENSMUST00000156963.8	1208	5	5626	26	4506	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTCATTCTGGGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	137011249	137011043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137011000_137011200
ONT_simulated_read_17326028	chr2	-	879	7	ISM	ENSMUSG00000002107.19	ENSMUST00000142941.8	2338	12	117446	900	117446	-806	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGCTTGAAGGTGCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	6608978	6551950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_6552025_6554642_6554787_6558595_6558794_6565481_6565602_6590784_6590920_6604844_6604909_6608834
ONT_simulated_read_17326943	chr7	-	812	1	ISM	ENSMUSG00000039176.18	ENSMUST00000073889.14	7837	23	16357	2963	16357	-2963	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGGCACCAACCTCTTCG	NA	NA	NA	NA	NA	NA	NA	NA	79099753	79098941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_79098900_79099800
ONT_simulated_read_17328279	chr18	-	917	1	ISM	ENSMUSG00000024500.21	ENST00000394411.9	2622	10	253539	324	253325	216	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAACACTTTAGAGAACTTA	NA	NA	NA	NA	NA	NA	NA	NA	42779034	42778117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_42778100_42779000
ONT_simulated_read_17328807	chr6	+	1237	7	ISM	ENSMUSG00000040187.16	ENSMUST00000080530.6	1740	15	17083	-498	17083	-385	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATTCCCAGCTTAAATAC	NA	NA	NA	NA	NA	NA	NA	NA	146724110	146734642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_146724194_146724591_146724743_146726664_146726727_146728713_146728823_146729596_146729685_146731190_146731300_146734007
ONT_simulated_read_17332129	chr4	-	185	1	ISM	ENSMUSG00000040616.4	ENSMUST00000036572.4	1875	3	52211	917	5697	-303	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCAGCCCAGGGCATGCTC	NA	NA	NA	NA	NA	NA	NA	NA	141759404	141759219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_141759200_141759400
ONT_simulated_read_17333355	chr7	-	2204	15	ISM	ENSMUSG00000001248.16	ENSMUST00000001280.14	2713	19	8427	0	8359	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	30842080	30829551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835021_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975
ONT_simulated_read_17334961	chr8	-	665	4	ISM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	336	332	336	-332	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCCCATGGTCTGGATTC	NA	NA	NA	NA	NA	NA	NA	NA	106937229	106927680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996
ONT_simulated_read_17338067	chr5	-	440	4	ISM	ENSMUSG00000029012.12	ENSMUST00000030872.12	2103	14	3778	42744	3778	-42744	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTACGCTGCCTACATTAA	NA	NA	NA	NA	NA	NA	NA	NA	22751595	22734230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_22734284_22738760_22738873_22742519_22742595_22751395
ONT_simulated_read_17338650	chr12	-	708	1	ISM	ENSMUSG00000020634.13	ENSMUST00000020962.12	2696	7	26979	987	26538	-670	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAATCTATATACACAGTT	NA	NA	NA	NA	NA	NA	NA	NA	4930726	4930018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_4930000_4930700
ONT_simulated_read_17339128	chr7	+	377	3	ISM	ENSMUSG00000002781.20	ENSMUST00000209350.2	2466	7	322	10464	322	-10464	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGACCCTGGACCAGCCG	NA	NA	NA	NA	NA	NA	NA	NA	45546846	45556369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_45547091_45549055_45549161_45556341
ONT_simulated_read_17339764	chr3	-	815	8	ISM	ENSMUSG00000005625.16	ENSMUST00000107237.8	1332	10	6725	234	6654	-223	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	227	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTCCAGGTGTGGATCC	NA	NA	NA	NA	NA	NA	NA	NA	94943200	94940238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941228_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120
ONT_simulated_read_1734322	chr11	+	1109	11	ISM	ENSMUSG00000020385.17	ENSMUST00000093132.13	1949	13	8885	324	-1452	-324	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTCTCTAGGAGCAGTTA	NA	NA	NA	NA	NA	NA	NA	NA	51162825	51172267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ONT_simulated_read_17345130	chr10	-	408	1	ISM	ENSMUSG00000020029.7	ENSMUST00000020217.7	3210	5	14682	2050	3132	-215	mono-exon	FALSE	NA	NA	NA	NA	NA	344	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATTCCTTTGGTTTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	95385326	95384918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_95384900_95385300
ONT_simulated_read_17345818	chr10	-	1896	2	ISM	ENSMUSG00000020114.13	ENSMUST00000020315.13	7766	15	33247	2148	33247	-2148	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGGGTTATGTGATGTGC	NA	NA	NA	NA	NA	NA	NA	NA	119042713	119037307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_119039111_119042620
ONT_simulated_read_17346656	chr13	-	2006	10	ISM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	12741	201	5959	-201	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	835	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACTGTGGGCACCATCAT	NA	NA	NA	NA	NA	NA	NA	NA	74485658	74470573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509
ONT_simulated_read_17350381	chr16	-	2118	4	ISM	ENSMUSG00000022656.16	ENSMUST00000023334.15	3062	6	37857	248	-10600	-248	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTAGTTATTTAATGT	NA	NA	NA	NA	NA	NA	NA	NA	46279473	46267779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_46269332_46274986_46275139_46278476_46278595_46279177
ONT_simulated_read_17356958	chr9	-	1453	1	ISM	ENSMUSG00000032253.14	ENSMUST00000034787.12	10756	40	103656	4249	103656	-4249	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTGAGTTATATCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	82753913	82752460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_82752500_82753900
ONT_simulated_read_1735729	chr7	-	960	1	NIC	ENSMUSG00000059981.13	novel	4274	19	NA	NA	17358	-279	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAGGAGGCCTTCCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	126466088	126465128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_126465100_126466100
ONT_simulated_read_17357345	chr6	-	666	1	ISM	ENSMUSG00000040029.16	ENSMUST00000048418.14	5360	25	58670	1449	58667	-1441	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCGTTTTCCATCACTT	NA	NA	NA	NA	NA	NA	NA	NA	148674295	148673629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_148673600_148674300
ONT_simulated_read_17357417	chr4	-	607	2	ISM	ENSMUSG00000066149.12	ENSMUST00000084525.12	819	4	5751	0	5734	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGACGTCCTTAAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	62321128	62312819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_62313259_62320960
ONT_simulated_read_17362166	chr16	+	1300	4	ISM	ENSMUSG00000023147.18	ENSMUST00000232832.2	2678	5	6399	1026	6392	869	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGTTTTTGAAGCACTTT	NA	NA	NA	NA	NA	NA	NA	NA	95953009	95958026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_95953179_95954170_95954239_95955280_95955396_95957078
ONT_simulated_read_17363507	chr17	+	909	9	ISM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	15634	15572	15634	-15572	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTATCACCAGCAGGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	29895202	29909381	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281
ONT_simulated_read_17363970	chr17	-	388	1	FSM	ENSMUSG00000021631.9	ENSMUST00000061311.9	306	1	0	-82	0	82	mono-exon	FALSE	NA	NA	NA	NA	NA	198	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATATTAAACAACCTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	54174048	54173660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_54173700_54174000
ONT_simulated_read_17365180	chr12	+	617	6	ISM	ENSMUSG00000021076.7	ENSMUST00000021479.6	4022	13	0	14946	0	-14946	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTTTCTTGTGTGTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	70984630	70996546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477
ONT_simulated_read_17367511	chr19	-	644	1	FSM	ENSMUSG00000075268.3	ENSMUST00000099988.3	561	1	0	-83	0	83	mono-exon	FALSE	NA	NA	NA	NA	NA	660	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAGTTCTTAGCTGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	16244985	16244341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_16244300_16245000
ONT_simulated_read_17367781	chr12	-	181	3	ISM	ENSMUSG00000005656.10	ENSMUST00000218934.2	1441	12	38407	5397	38407	-5397	internal_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACTGGACAAGGCAAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	54803860	54798831	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_54798886_54801074_54801162_54803820
ONT_simulated_read_17368783	chr10	-	494	1	ISM	ENSMUSG00000019868.17	ENSMUST00000154132.8	1974	8	49731	581	31879	0	mono-exon	FALSE	NA	NA	NA	NA	NA	978	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCGGGTTGGAGATCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	14531573	14531079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_14531100_14531600
ONT_simulated_read_17374136	chr5	+	2417	15	ISM	ENSMUSG00000042605.17	ENST00000673557.1	3865	25	71916	-45	71866	45	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGACTTGGAACGCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	121921969	121952797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121944284_121944339_121948913_121949060_121949447_121949676_121951447_121951617_121952400
ONT_simulated_read_17375275	chr17	+	219	2	NIC	ENSMUSG00000023067.15	novel	2080	3	NA	NA	0	-1037	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACGGTGGAACTTTGAC	NA	NA	NA	NA	NA	NA	NA	NA	29312754	29317514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_+_29312836_29317376
ONT_simulated_read_17380577	chr4	-	786	1	ISM	ENSMUSG00000029030.15	ENSMUST00000030896.15	1724	4	2101	295	2067	-295	mono-exon	FALSE	NA	NA	NA	NA	NA	234	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTTTAAAAGGGACTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	154243022	154242236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_154242200_154243000
ONT_simulated_read_1738263	chr12	-	1427	7	ISM	ENSMUSG00000021071.18	ENST00000684578.1	4359	13	79089	1347	79089	-781	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCGTGATGTTAGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	70314975	70292660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_70293226_70295038_70295202_70297730_70298035_70298793_70298818_70299216_70299259_70301811_70302001_70314835
ONT_simulated_read_17383298	chr9	-	952	11	ISM	ENSMUSG00000025235.9	ENSMUST00000026265.8	2518	16	7656	5258	7656	-5258	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTCAGTGCAGCCATCAA	NA	NA	NA	NA	NA	NA	NA	NA	59253135	59234530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_59234642_59234738_59234892_59235862_59235932_59237700_59237756_59240762_59240891_59243646_59243701_59247093_59247167_59248369_59248482_59249770_59249835_59251342_59251423_59253082
ONT_simulated_read_17383522	chr4	-	464	3	ISM	ENSMUSG00000040387.17	ENST00000539200.5	2799	7	85	33897	85	-32844	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCAACGAGGCCCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	24792714	24650116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_24650267_24682054_24682271_24792616
ONT_simulated_read_1738527	chr13	+	580	6	ISM	ENSMUSG00000025875.15	ENST00000503045.5	801	8	3196	32	3145	-32	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGACATCAAGGCGGTG	NA	NA	NA	NA	NA	NA	NA	NA	54940552	54944000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_54940700_54941076_54941179_54942865_54942992_54943223_54943281_54943778_54943896_54943969
ONT_simulated_read_1738980	chr11	-	478	1	FSM	ENSMUSG00000099681.2	ENSMUST00000190120.2	3708	1	0	3230	0	-3230	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCCACGCCACGCCACGC	NA	NA	NA	NA	NA	NA	NA	NA	105072259	105071781	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_105071800_105072300
ONT_simulated_read_17391600	chr14	+	458	1	ISM	ENSMUSG00000022010.20	ENSMUST00000110888.8	4999	5	1153	91191	527	-89166	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTAGGTGAGCCTGAACG	NA	NA	NA	NA	NA	NA	NA	NA	76653553	76654011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_76653600_76654000
ONT_simulated_read_17391877	chr17	+	655	1	FSM	ENSMUSG00000036430.9	ENSMUST00000040434.9	1164	1	0	509	0	-509	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACACCTTGCGGCTTGCG	NA	NA	NA	NA	NA	NA	NA	NA	47201609	47202264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_47201600_47202300
ONT_simulated_read_17392337	chr8	+	229	3	ISM	ENSMUSG00000031628.10	ENSMUST00000210534.2	583	5	-35	7184	12	-5778	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCCTGAAATGGGCATAT	NA	NA	NA	NA	NA	NA	NA	NA	47070441	47085417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_47070537_47082768_47082837_47085351
ONT_simulated_read_17392416	chr7	-	168	2	ISM	ENSMUSG00000034825.15	ENST00000531090.5	691	5	14991	3868	14945	-3868	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAATATAATCTCATCTCC	NA	NA	NA	NA	NA	NA	NA	NA	109365807	109364715	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_109364756_109365679
ONT_simulated_read_17395602	chr4	+	1791	15	ISM	ENSMUSG00000029062.15	ENST00000340677.9	2420	20	8638	-5	8638	5	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGACGTGGCCCGACTAG	NA	NA	NA	NA	NA	NA	NA	NA	155718624	155734250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
ONT_simulated_read_17397152	chrX	+	1245	10	ISM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	315	1200	315	-1200	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCCATTGATGATGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	73348918	73354268	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243
ONT_simulated_read_17398027	chr15	-	1117	8	ISM	ENSMUSG00000037458.16	ENST00000683787.1	4228	13	20451	2059	20422	-695	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTACATTCCAGTGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	38499085	38490555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_38490717_38491719_38491935_38492487_38492601_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912
ONT_simulated_read_17398740	chr4	+	1091	10	ISM	ENSMUSG00000033985.18	ENSMUST00000045542.13	3033	11	20735	1566	0	-1426	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTACTATCTGGCTGTCTCG	NA	NA	NA	NA	NA	NA	NA	NA	116598879	116659873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_116599116_116608301_116608424_116628996_116629046_116649284_116649432_116657729_116657813_116658356_116658442_116658645_116658730_116658916_116659004_116659420_116659539_116659793
ONT_simulated_read_17408459	chr11	-	372	1	ISM	ENSMUSG00000025377.15	ENSMUST00000093901.12	2770	13	6760	1069	6760	-1069	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCCAGACAGATTTACAGA	NA	NA	NA	NA	NA	NA	NA	NA	119982797	119982425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_119982400_119982800
ONT_simulated_read_17410005	chr15	-	488	5	ISM	ENSMUSG00000022336.4	ENST00000677272.1	1210	11	19363	90	19363	-90	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGATTGAAAAGACCAAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	43126731	43114964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604
ONT_simulated_read_17410309	chrX	+	441	2	ISM	ENSMUSG00000006373.11	ENSMUST00000073339.7	1857	3	0	3927	0	-3926	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCCAGGGGCCTTGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	35861858	35865805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_35862268_35865773
ONT_simulated_read_17411433	chr9	+	655	6	ISM	ENSMUSG00000032393.16	ENSMUST00000167773.2	3142	21	22240	14558	22240	-14558	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATGACCTACAACCTG	NA	NA	NA	NA	NA	NA	NA	NA	64962243	64973714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_64962288_64963073_64963234_64967484_64967565_64970708_64970862_64971100_64971237_64973632
ONT_simulated_read_17412035	chr4	-	1675	11	ISM	ENSMUSG00000008575.18	ENSMUST00000107248.8	3294	12	6937	643	6538	-584	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAACTGAGGGGAAAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	82417007	82214927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_82215049_82228539_82228629_82238710_82238794_82241781_82241948_82245965_82246151_82248528_82248664_82268625_82268745_82271759_82271881_82277968_82278038_82301844_82301899_82416474
ONT_simulated_read_17413281	chr7	-	814	6	ISM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	3930	375	3930	-375	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTTTTTTTTAACTTCA	NA	NA	NA	NA	NA	NA	NA	NA	139692459	139685997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331
ONT_simulated_read_17413520	chr19	-	2042	9	ISM	ENSMUSG00000042694.18	ENSMUST00000049369.16	1992	10	762	-370	0	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAGCCTTTGACGTAGCT	NA	NA	NA	NA	NA	NA	NA	NA	47524796	47489101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634
ONT_simulated_read_17421520	chr16	+	1522	10	FSM	ENSMUSG00000022812.15	ENST00000650344.2	1731	10	229	-20	0	20	multi-exon	FALSE	canonical	NA	NA	NA	NA	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTTCATTTTAGTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	37910649	38061051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_37910976_37964621_37964816_37991025_37991110_38004796_38004908_38008172_38008304_38011889_38011997_38014258_38014357_38028356_38028453_38040333_38040521_38060863
ONT_simulated_read_17421668	chr7	-	441	3	ISM	ENSMUSG00000040139.15	ENSMUST00000068996.13	1126	4	23060	563	23030	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAATAAAATAAAATA	NA	NA	NA	NA	NA	NA	NA	NA	136989431	136977865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_136978081_136989099_136989163_136989268
ONT_simulated_read_17425038	chr7	+	853	4	ISM	ENSMUSG00000058454.16	ENSMUST00000207143.2	1652	9	11087	127	11087	-127	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATAGAGAGGTGTCATT	NA	NA	NA	NA	NA	NA	NA	NA	143395070	143401267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_143395109_143396850_143397056_143399177_143399310_143400789
ONT_simulated_read_17425811	chr16	+	1171	11	ISM	ENSMUSG00000022663.4	ENSMUST00000023343.4	2057	12	0	2311	0	-2311	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATATGTATCCTTATGTG	NA	NA	NA	NA	NA	NA	NA	NA	44979147	45006590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_44979535_44982768_44982811_44987342_44987393_44990228_44990300_44992008_44992117_44995611_44995662_44998592_44998675_45003018_45003054_45003183_45003340_45004044_45004173_45006528
ONT_simulated_read_17427829	chr15	+	656	8	ISM	ENSMUSG00000003352.15	ENSMUST00000230490.2	2477	13	4384	2844	4384	-2844	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACCATCATTGAGCGCTC	NA	NA	NA	NA	NA	NA	NA	NA	98537369	98539566	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_98537492_98537694_98537818_98538219_98538336_98538566_98538632_98538839_98538860_98539057_98539139_98539280_98539340_98539496
ONT_simulated_read_17428449	chr6	-	389	1	ISM	ENSMUSG00000004446.13	ENSMUST00000004560.12	2189	6	22561	1050	22561	-1050	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCGGCCCATGAGCGTGA	NA	NA	NA	NA	NA	NA	NA	NA	120871253	120870864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_120870900_120871300
ONT_simulated_read_17431139	chr2	-	1832	6	ISM	ENSMUSG00000027366.13	ENSMUST00000028844.11	5616	15	15964	2521	15964	-2521	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGCAGAGGCAGGCGGAT	NA	NA	NA	NA	NA	NA	NA	NA	126759191	126734831	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_126736207_126746829_126746991_126750025_126750101_126754562_126754666_126755451_126755509_126759130
ONT_simulated_read_17431539	chr17	-	1187	1	NIC	ENSMUSG00000024087.5	novel	3398	4	NA	NA	4363	-2539	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGCAGTAGGTTTTAGAG	NA	NA	NA	NA	NA	NA	NA	NA	80018107	80016920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_80016900_80018100
ONT_simulated_read_17434813	chr10	-	2199	1	ISM	ENSMUSG00000039810.12	ENSMUST00000040572.10	3721	3	2241	1372	2241	-1372	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGTGCTATTCCCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	128381402	128379203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128379200_128381400
ONT_simulated_read_17440718	chr8	-	1488	9	ISM	ENSMUSG00000036180.16	ENSMUST00000065169.12	3812	13	78310	3220	56197	-3033	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGAGCACAGGTACACC	NA	NA	NA	NA	NA	NA	NA	NA	70370724	70364339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369102_70369218_70369351_70370092_70370183_70370372_70370505_70370595
ONT_simulated_read_17441710	chr4	-	384	3	ISM	ENSMUSG00000028923.15	ENST00000443980.6	763	7	5668	-2	5668	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGACCCACGGAAGGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	140799948	140794826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_140794924_140797366_140797545_140799839
ONT_simulated_read_17441800	chr4	+	883	9	ISM	ENSMUSG00000028708.17	ENSMUST00000106513.10	2552	14	17799	3793	17799	-3793	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGACCTCATCTCTAAGC	NA	NA	NA	NA	NA	NA	NA	NA	115714228	115732654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577
ONT_simulated_read_17445015	chr2	+	980	3	ISM	ENSMUSG00000027333.19	ENSMUST00000110189.9	1919	6	28243	293	28193	-288	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTGTCCTCACTGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	131362105	131366799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_131362189_131362331_131363092_131366662
ONT_simulated_read_17446812	chr18	+	1065	1	FSM	ENSMUSG00000044022.6	ENSMUST00000061405.6	4705	1	0	3640	0	-3640	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCGAAATCCACCCAACCT	NA	NA	NA	NA	NA	NA	NA	NA	37646673	37647738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_37646700_37647700
ONT_simulated_read_17450664	chrX	-	876	3	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	108390	2015	108390	-2015	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTCTTTAGTACATTGAC	NA	NA	NA	NA	NA	NA	NA	NA	40892388	40885882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_40886657_40891823_40891870_40892332
ONT_simulated_read_17451276	chr11	+	1531	3	ISM	ENSMUSG00000044950.8	ENSMUST00000094294.5	1814	4	0	3354	0	-3354	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGTGACGAGTCCTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	43572884	43607884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_43573444_43595360_43596305_43607856
ONT_simulated_read_17452847	chr19	-	380	1	ISM	ENSMUSG00000024787.15	ENSMUST00000025702.14	1635	8	8366	160	8209	-160	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGAGCCTTCCTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	6169968	6169588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6169600_6170000
ONT_simulated_read_17453163	chr17	-	1316	1	ISM	ENSMUSG00000034647.16	ENSMUST00000038116.13	10821	13	106749	3311	106749	-3311	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTCAAGTGAGATACTTG	NA	NA	NA	NA	NA	NA	NA	NA	66277319	66276003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_66276000_66277300
ONT_simulated_read_17454066	chr17	-	1086	9	ISM	ENSMUSG00000024426.18	ENSMUST00000061052.12	1452	13	1114	0	1084	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACTTGTCATTATTCAAA	NA	NA	NA	NA	NA	NA	NA	NA	36219853	36208486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744
ONT_simulated_read_17457250	chr16	+	993	11	ISM	ENSMUSG00000022808.6	ENSMUST00000023502.6	3161	14	0	10139	0	-10139	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACCTGGAGACAGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	33071813	33110500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_33071972_33084628_33084751_33087119_33087256_33088387_33088538_33090025_33090074_33097311_33097368_33101002_33101076_33104779_33104842_33106356_33106423_33108061_33108152_33110468
ONT_simulated_read_17460749	chr10	-	987	6	ISM	ENSMUSG00000035835.15	ENSMUST00000092325.11	2766	7	7078	1147	7014	-1147	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCCCCATGGGCAAAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	79703390	79701761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_79702016_79702245_79702420_79702501_79702560_79702668_79702865_79703005_79703142_79703221
ONT_simulated_read_17461689	chr4	-	1290	1	ISM	ENSMUSG00000028568.17	ENST00000313334.13	2375	7	16713	2364	15052	-391	mono-exon	FALSE	NA	NA	NA	NA	NA	1174	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCACTCAGGTTTTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	108674076	108672786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_108672800_108674100
ONT_simulated_read_17462380	chr13	-	500	2	ISM	ENSMUSG00000021765.10	ENSMUST00000223640.3	2833	6	4458	1230	4093	-178	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCCCCATCTAGCCATCT	NA	NA	NA	NA	NA	NA	NA	NA	114591029	114590055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_114590342_114590815
ONT_simulated_read_17464628	chr19	-	443	1	Genic_Genomic	ENSMUSG00000040913.12	novel	NA	NA	NA	NA	13555	409	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTGTCACACCACCATC	NA	NA	NA	NA	NA	NA	NA	NA	45566726	45566283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr19_-_45566300_45566700
ONT_simulated_read_17466223	chr8	+	134	1	ISM	ENSMUSG00000033751.6	ENSMUST00000036734.6	2494	2	2773	1054	2773	-1054	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCCCTTCCCAATAAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	85560923	85561057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_85560900_85561100
ONT_simulated_read_17467747	chr2	+	483	5	ISM	ENSMUSG00000026790.20	ENST00000546203.5	2134	16	91	20260	0	-20260	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCATGAGAACACGGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	29780167	29792288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_29780224_29782197_29782289_29783455_29783525_29791088_29791260_29792192
ONT_simulated_read_1746779	chr12	-	407	1	NIC	ENSMUSG00000021248.10	novel	1482	5	NA	NA	30405	221	mono-exon	FALSE	NA	NA	NA	NA	NA	372	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAAGCCAGCCTTCGTCC	NA	NA	NA	NA	NA	NA	NA	NA	85390324	85389917	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_85389900_85390300
ONT_simulated_read_17473192	chr2	+	1721	13	ISM	ENSMUSG00000027006.14	ENSMUST00000028392.8	4042	23	0	18548	0	-13893	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTATGTCTTCCAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	80145809	80165839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_80146150_80147592_80147944_80149503_80149667_80151587_80151639_80155003_80155087_80155338_80155471_80155961_80156056_80157001_80157080_80158415_80158460_80161612_80161751_80163272_80163363_80164069_80164184_80165796
ONT_simulated_read_17473228	chr4	-	305	2	ISM	ENSMUSG00000028992.14	ENSMUST00000105693.2	1378	5	15400	441	15400	-441	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGACATCAGAGCAACATCC	NA	NA	NA	NA	NA	NA	NA	NA	149554229	149553496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_149553669_149554096
ONT_simulated_read_17473831	chr10	-	703	5	ISM	ENSMUSG00000035365.16	ENSMUST00000048518.16	3594	11	13743	20252	13743	-20252	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGCTCCTACCAGAAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	87969060	87947545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955
ONT_simulated_read_1748266	chr11	-	631	4	NNC	ENSMUSG00000000753.16	novel	1250	7	NA	NA	1563	1497	at_least_one_novel_splicesite	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCCATGATGTCAGATCC	NA	NA	NA	NA	NA	NA	NA	NA	75307254	75304798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_75304871_75305746_75305951_75306400_75306557_75307055
ONT_simulated_read_17485430	chr1	-	1781	4	ISM	ENSMUSG00000042066.17	ENSMUST00000132435.2	3514	5	9172	1281	-4409	-98	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCAGCACCGCCCTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	132308884	132285341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_132285556_132286640_132286777_132288012_132288954_132308394
ONT_simulated_read_17485486	chr6	-	936	5	ISM	ENSMUSG00000002870.9	ENSMUST00000058011.8	3371	16	1263	8359	1263	-8359	internal_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCACCGGAGTCCTGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	88874499	88868814	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268
ONT_simulated_read_17493257	chr7	+	1441	1	ISM	ENSMUSG00000052707.9	ENST00000395799.8	8355	25	46479	23221	46450	-23221	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCCGCAAGTGCCGTCT	NA	NA	NA	NA	NA	NA	NA	NA	122769853	122771294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_122769900_122771300
ONT_simulated_read_17494790	chr2	+	2440	4	ISM	ENSMUSG00000075027.11	ENSMUST00000111270.8	2909	5	0	1797	0	-1797	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATCATGGGTTATTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	92858300	92861960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_92859993_92860482_92860520_92860739_92861301_92861810
ONT_simulated_read_17497548	chr17	+	1487	9	ISM	ENSMUSG00000024151.14	ENSMUST00000024967.14	3283	16	16612	2726	16612	-2726	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACATTGGAACCTCGCTG	NA	NA	NA	NA	NA	NA	NA	NA	87996369	88028415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310
ONT_simulated_read_17497884	chr7	+	445	1	FSM	ENSMUSG00002076121.1	ENSMUST00020183289.1	71	1	0	-374	0	374	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCAAACTTGGGACTTTG	NA	NA	NA	NA	NA	NA	NA	NA	142130589	142131034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_142130600_142131000
ONT_simulated_read_17500533	chrM	-	421	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTACCGCCAAGTCCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	1024	603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chrM_-_600_1000
ONT_simulated_read_17502612	chr17	-	974	1	ISM	ENSMUSG00000077450.14	ENSMUST00000057373.14	6109	5	13037	4036	12797	230	mono-exon	FALSE	NA	NA	NA	NA	NA	213	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTAGCGTAGTACCTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	33966467	33965493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_33965500_33966500
ONT_simulated_read_17503499	chr13	-	1659	14	ISM	ENSMUSG00000021546.19	ENSMUST00000225674.2	2704	16	2150	883	431	-172	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTAATTATTGTGAACAC	NA	NA	NA	NA	NA	NA	NA	NA	58547805	58539935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706
ONT_simulated_read_17503676	chr6	-	291	1	FSM	ENSMUSG00000051695.7	ENSMUST00000053015.7	1830	1	0	1539	0	-1539	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCCCCGCTCGCCTCGCG	NA	NA	NA	NA	NA	NA	NA	NA	86503303	86503012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_86503000_86503300
ONT_simulated_read_17504666	chr4	-	559	1	ISM	ENSMUSG00000028607.17	ENSMUST00000030345.15	2372	5	15421	3650	15311	-3435	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAACCCTGAGGAAAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	107765386	107764827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_107764800_107765400
ONT_simulated_read_17505590	chr13	-	1238	1	ISM	ENSMUSG00000041417.16	ENSMUST00000055518.13	7113	16	83157	3260	7570	-159	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTTTTCTTGTACAGAA	NA	NA	NA	NA	NA	NA	NA	NA	101821568	101820330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_101820300_101821600
ONT_simulated_read_17505658	chr14	-	454	1	ISM	ENSMUSG00000021768.16	ENSMUST00000184703.8	902	4	7625	4	6550	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTGGTTTGTATGACAG	NA	NA	NA	NA	NA	NA	NA	NA	21783919	21783465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_21783500_21783900
ONT_simulated_read_17507440	chr5	-	956	1	ISM	ENSMUSG00000043059.17	ENSMUST00000114590.8	2228	4	2204	163	1943	-161	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGGACTTGTCTTAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	31357443	31356487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_31356500_31357400
ONT_simulated_read_17508217	chr9	-	617	1	ISM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	18297	400	9876	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAAGAAGACTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	13720106	13719489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_13719500_13720100
ONT_simulated_read_17510478	chr17	-	1636	3	ISM	ENSMUSG00000002289.17	ENSMUST00000002360.17	3308	7	4435	541	4435	-541	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATATAACTCATGCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	33996369	33993264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_33994543_33995923_33996206_33996293
ONT_simulated_read_17513080	chr7	-	1332	1	ISM	ENSMUSG00000078817.5	ENSMUST00000108653.4	6928	10	8123	21331	8036	-17642	mono-exon	FALSE	NA	NA	NA	NA	NA	274	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATCTCCCCTCAGGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	3290120	3288788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_3288800_3290100
ONT_simulated_read_17513943	chr1	-	510	5	ISM	ENSMUSG00000061816.16	ENSMUST00000119429.8	803	7	5024	190	5003	-190	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGCAGAAGATCAAACAATC	NA	NA	NA	NA	NA	NA	NA	NA	66969489	66963646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_66963717_66964181_66964225_66965366_66965445_66965692_66965867_66969344
ONT_simulated_read_17517962	chr12	+	707	7	ISM	ENSMUSG00000041712.8	ENSMUST00000046404.8	3261	11	0	9594	0	-9594	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGGCATGGGAGATGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	102724225	102734372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328
ONT_simulated_read_17523715	chr10	-	1117	13	NIC	ENSMUSG00000052798.14	novel	3114	28	NA	NA	15485	-8387	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGGCATGGAGAGCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	117613118	117595152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_117595238_117597149_117597253_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033
ONT_simulated_read_17527189	chr2	+	1551	5	FSM	ENSMUSG00000001855.16	ENST00000483497.6	2324	5	775	-2	775	2	multi-exon	FALSE	canonical	NA	NA	NA	NA	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCAGGTGGGACCTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	31923987	31937590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_31924982_31928113_31928185_31929331_31929489_31932428_31932582_31937414
ONT_simulated_read_17527606	chrX	-	275	1	NIC	ENSMUSG00000031370.13	novel	2735	11	NA	NA	828	-2996	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCCAAATGGTTCTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	162736652	162736377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_162736400_162736700
ONT_simulated_read_1752918	chr17	-	901	5	ISM	ENSMUSG00000042625.17	ENSMUST00000075510.12	3277	21	5641	12492	5641	-12492	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGACGCTTGTAATGAC	NA	NA	NA	NA	NA	NA	NA	NA	56885944	56882430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56883013_56883877_56883906_56884842_56884906_56885640_56885845_56885920
ONT_simulated_read_17532113	chr16	+	620	7	ISM	ENSMUSG00000022681.16	ENSMUST00000023362.15	1175	10	26	3791	26	-3788	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTAGCGTTTGTATCCG	NA	NA	NA	NA	NA	NA	NA	NA	13637140	13649524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470
ONT_simulated_read_17534508	chr3	+	794	6	ISM	ENSMUSG00000068823.11	ENSMUST00000029446.13	4318	20	8576	14947	8338	-13910	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAGTTAATAAACTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	102936317	102950555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472
ONT_simulated_read_17536192	chr15	-	2501	16	NNC	ENSMUSG00000022565.16	novel	14917	32	NA	NA	7084	-10657	at_least_one_novel_splicesite	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGGTGGAGGCTGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	76072826	76065832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_-_76066100_76067109_76067209_76067290_76067396_76067561_76067646_76067722_76068080_76068166_76068306_76069510_76069690_76069804_76069967_76070053_76070238_76070340_76070468_76070559_76070715_76070810_76070964_76071836_76071963_76072178_76072275_76072372_76072478_76072663
ONT_simulated_read_17536963	chr6	-	513	1	ISM	ENSMUSG00000002797.10	ENSMUST00000131475.2	3960	4	6965	2893	6822	401	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAGTACAAAGATGGTAC	NA	NA	NA	NA	NA	NA	NA	NA	54962970	54962457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_54962500_54963000
ONT_simulated_read_17537031	chr8	+	752	1	FSM	ENSMUSG00000108955.2	ENSMUST00000207266.2	1456	1	-712	1416	-712	-1416	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTCATCCATCCCTAGTA	NA	NA	NA	NA	NA	NA	NA	NA	3507326	3508078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_3507300_3508100
ONT_simulated_read_17537306	chr2	-	625	7	ISM	ENSMUSG00000039128.14	ENST00000378900.6	875	11	21724	0	21724	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAGTACATGGAAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	5828009	5800359	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_5800498_5803171_5803301_5808757_5808787_5812241_5812318_5815606_5815656_5826086_5826194_5827912
ONT_simulated_read_17537319	chr11	-	1188	10	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	1758	18099	1758	-18099	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACTTATCCTGACTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	98913257	98901867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165
ONT_simulated_read_17537610	chr4	-	1102	11	ISM	ENSMUSG00000029016.14	ENST00000312413.10	2621	21	12376	5546	12254	-5546	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTCGCATGCTGGACTT	NA	NA	NA	NA	NA	NA	NA	NA	148111016	148098696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_148098743_148098957_148099085_148101308_148101436_148101952_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108673_148110989
ONT_simulated_read_17538337	chr18	-	531	1	NIC	ENSMUSG00000054008.10	novel	5262	3	NA	NA	24025	1	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTCTGTCCTCCAGACA	NA	NA	NA	NA	NA	NA	NA	NA	60822436	60821905	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_60821900_60822400
ONT_simulated_read_17538886	chr1	+	2075	13	ISM	ENSMUSG00000041642.19	ENST00000422435.2	5352	35	50	20456	50	-20456	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAGGTCGTGAGGATGAG	NA	NA	NA	NA	NA	NA	NA	NA	136059191	136080967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_136059501_136072336_136072560_136072867_136073051_136075235_136075386_136075471_136075607_136075944_136076116_136076363_136076480_136076998_136077195_136078868_136079059_136079780_136079845_136079934_136080154_136080495_136080578_136080930
ONT_simulated_read_17540019	chr12	-	487	3	ISM	ENSMUSG00000019718.9	ENSMUST00000019862.3	1831	5	7974	362	7974	-362	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAAAGTATGTTTAGTAT	NA	NA	NA	NA	NA	NA	NA	NA	72124239	72120563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_72120811_72123917_72124056_72124137
ONT_simulated_read_17540521	chr11	-	1142	1	ISM	ENSMUSG00000004044.10	ENSMUST00000060792.6	3491	2	11572	1441	11572	-1441	mono-exon	FALSE	NA	NA	NA	NA	NA	3491	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCAAGAGGAAAGAGCAAAT	NA	NA	NA	NA	NA	NA	NA	NA	100850141	100848999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100849000_100850100
ONT_simulated_read_17540740	chr19	+	456	2	ISM	ENSMUSG00000025034.10	ENSMUST00000026008.9	3580	6	12958	1412	12958	-1412	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCGTGGCCAACCACGGT	NA	NA	NA	NA	NA	NA	NA	NA	46503098	46503875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_46503177_46503497
ONT_simulated_read_17543595	chr15	-	403	1	ISM	ENSMUSG00000002524.18	ENSMUST00000100527.13	1881	12	10321	8	10298	0	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAAGTCCCTGTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	75942441	75942038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75942000_75942400
ONT_simulated_read_17544577	chr15	-	121	1	ISM	ENSMUSG00000022620.15	ENSMUST00000165199.8	3492	9	3906	923	3906	-923	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGAAACACATCCAACTC	NA	NA	NA	NA	NA	NA	NA	NA	89357722	89357601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_89357600_89357700
ONT_simulated_read_17546705	chr17	-	3410	10	ISM	ENSMUSG00000052105.18	ENSMUST00000097291.10	7274	15	63840	6651	52483	-3135	internal_fragment	FALSE	canonical	NA	NA	NA	NA	267	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGCCGAGCCACACGTCA	NA	NA	NA	NA	NA	NA	NA	NA	66692905	66650631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_66651361_66653348_66653381_66655237_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66684847_66685007_66686123_66687432_66692854
ONT_simulated_read_17547174	chr3	-	1177	11	ISM	ENSMUSG00000033285.16	ENSMUST00000052120.14	3432	27	17783	324	17783	-324	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACGGATTTAGTTTAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	100051940	100045819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874
ONT_simulated_read_1754788	chr3	-	1952	1	NIC	ENSMUSG00000038256.16	novel	6102	10	NA	NA	5790	-4138	mono-exon	FALSE	NA	NA	NA	NA	NA	367	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTCCAATGCTGGGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	97118033	97116081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_97116100_97118000
ONT_simulated_read_17548859	chr2	+	296	2	ISM	ENSMUSG00000027628.11	ENSMUST00000029158.4	3427	4	28	18288	28	-17472	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTCATGTCTTCCATG	NA	NA	NA	NA	NA	NA	NA	NA	156389543	156392604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_156389804_156392568
ONT_simulated_read_17550244	chr7	-	628	1	ISM	ENSMUSG00000050855.17	ENSMUST00000085792.5	2764	5	7424	1661	7424	-1661	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCACATCAGAAAATTCACA	NA	NA	NA	NA	NA	NA	NA	NA	29545649	29545021	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_29545000_29545600
ONT_simulated_read_17550851	chr9	+	403	2	ISM	ENSMUSG00000039285.13	ENSMUST00000134433.8	2499	7	37	13012	37	-13012	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAGAGGCAGTGACTCCA	NA	NA	NA	NA	NA	NA	NA	NA	117869683	117876540	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_117870027_117876480
ONT_simulated_read_17551338	chr3	-	527	4	ISM	ENSMUSG00000027932.15	ENSMUST00000029541.12	2259	10	2487	1288	2487	-1288	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGACTTCCTTCAGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	90294747	90293833	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_90293885_90294054_90294254_90294370_90294462_90294561
ONT_simulated_read_175545	chr10	+	1407	8	ISM	ENSMUSG00000019920.19	ENSMUST00000105468.2	1205	10	13669	-562	13669	357	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATACTGGGAACTGTATG	NA	NA	NA	NA	NA	NA	NA	NA	58243878	58257962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_58243959_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
ONT_simulated_read_17555180	chr2	-	321	2	ISM	ENSMUSG00000027224.15	ENSMUST00000028653.14	1026	6	1982	152	1982	-152	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTGGGGCTCTGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	122135325	122134377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_122134480_122135106
ONT_simulated_read_17555919	chr18	-	682	1	ISM	ENSMUSG00000036223.17	ENSMUST00000040188.16	2630	7	10754	1045	7364	558	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGCAGATACCATGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	74330096	74329414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_74329400_74330100
ONT_simulated_read_17555992	chr15	+	1060	4	ISM	ENSMUSG00000022471.15	ENSMUST00000069530.13	2114	13	146	17155	146	-16954	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGCGACGTCCAGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	81900715	81907131	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_81901400_81903181_81903295_81906645_81906785_81907007
ONT_simulated_read_17556163	chr13	-	406	1	NIC	ENSMUSG00000113909.2	novel	757	3	NA	NA	4222	-155	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGTCTTCAACACACCAA	NA	NA	NA	NA	NA	NA	NA	NA	70799684	70799278	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_70799300_70799700
ONT_simulated_read_17556366	chr7	+	348	4	ISM	ENSMUSG00000061286.8	ENSMUST00000079634.8	1020	6	5223	278	5196	-278	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGGAATCACTGCAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	25363811	25367179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_25363874_25364845_25364987_25365677_25365768_25367124
ONT_simulated_read_17558093	chr4	+	921	6	ISM	ENSMUSG00000029063.17	ENSMUST00000105612.2	2737	10	4282	1289	4282	-1285	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGGTGTCCTACATCTCT	NA	NA	NA	NA	NA	NA	NA	NA	155671233	155674169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
ONT_simulated_read_17558971	chr17	-	1494	10	ISM	ENSMUSG00000012296.17	ENSMUST00000164342.10	2559	11	574	1011	560	-1008	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCCAGCTAGTTCGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	46593365	46569810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46582725_46582856_46593271
ONT_simulated_read_17559510	chr7	-	1565	8	ISM	ENSMUSG00000002983.18	ENSMUST00000098754.5	2203	12	11523	0	11523	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTTGGGGGTCTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	19351840	19340147	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686
ONT_simulated_read_17560137	chr16	-	899	1	ISM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	19139	1419	8381	480	mono-exon	FALSE	NA	NA	NA	NA	NA	268	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCAGGTCCTTTGCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	22065616	22064717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_22064700_22065600
ONT_simulated_read_17561533	chr7	+	1033	1	NIC	ENSMUSG00000089847.9	novel	3273	3	NA	NA	430	203	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCTTCTCTATTCTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	105290226	105291259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_+_105290200_105291300
ONT_simulated_read_17565890	chr5	+	1975	1	ISM	ENSMUSG00000029267.18	ENSMUST00000081567.11	4060	15	41193	95	41191	-95	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGTTCACATGGCTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	108254800	108256775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_108254800_108256800
ONT_simulated_read_17570468	chr3	+	2646	1	ISM	ENSMUSG00000050947.10	ENSMUST00000050909.7	5030	2	1708	1088	1685	-1088	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCCCATATCTCCATGGA	NA	NA	NA	NA	NA	NA	NA	NA	108095358	108098004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_108095400_108098000
ONT_simulated_read_17571746	chr8	+	943	8	ISM	ENSMUSG00000003033.16	ENSMUST00000003117.15	2084	12	92	4142	-13	-3519	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCATTCCCACAGCCGCA	NA	NA	NA	NA	NA	NA	NA	NA	72993953	73007087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_72994088_73000482_73000640_73002956_73003025_73003592_73003724_73004524_73004673_73005586_73005714_73006678_73006822_73007052
ONT_simulated_read_17579857	chr9	+	858	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	0	-60	0	60	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGACACATCCTTGGG	NA	NA	NA	NA	NA	NA	NA	NA	84306036	84306894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_84306000_84306900
ONT_simulated_read_17581787	chr2	+	473	4	ISM	ENSMUSG00000026821.17	ENSMUST00000100241.10	3102	18	7184	8996	7184	-8627	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGCTTATGTACAGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	28430737	28433652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_28430834_28432301_28432496_28432866_28432963_28433565
ONT_simulated_read_17584898	chr9	+	186	1	ISM	ENSMUSG00000036138.17	ENSMUST00000039784.12	1762	12	163	8657	-58	-8391	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGCGCACCCCCATCGGCC	NA	NA	NA	NA	NA	NA	NA	NA	119170522	119170708	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_119170500_119170700
ONT_simulated_read_17587126	chr13	-	954	1	ISM	ENSMUSG00000021482.11	ENSMUST00000222570.2	3011	6	21606	354	21606	-333	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTCTCAAAAACAGAACAATT	NA	NA	NA	NA	NA	NA	NA	NA	64438918	64437964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_64438000_64438900
ONT_simulated_read_17588510	chr6	-	2386	11	ISM	ENSMUSG00000061436.16	ENSMUST00000162359.8	3867	15	56643	18253	32	-12712	internal_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTGCGCCATGGTACACAG	NA	NA	NA	NA	NA	NA	NA	NA	38796214	38693071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_38693157_38695688_38695869_38698389_38698533_38706855_38706978_38707803_38707931_38714292_38714456_38720010_38720196_38722598_38722686_38724381_38724502_38724808_38724933_38795164
ONT_simulated_read_17588749	chr5	-	426	4	ISM	ENSMUSG00000029416.18	ENSMUST00000031367.15	2732	8	13634	1088	13634	-1088	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTACTACTTCTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	127680846	127673815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_127673837_127677483_127677643_127678921_127679078_127680756
ONT_simulated_read_17589862	chr5	-	523	4	ISM	ENSMUSG00000029406.16	ENSMUST00000086123.11	6620	24	90954	4461	61718	-3404	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGTCACCCTGACTGGG	NA	NA	NA	NA	NA	NA	NA	NA	124263527	124261213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_124261305_124261605_124261723_124262001_124262151_124263361
ONT_simulated_read_17590945	chr12	-	1826	5	ISM	ENSMUSG00000052593.17	ENSMUST00000101551.10	4469	20	43429	643	43375	-341	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCTGAATTCTGATTTCT	NA	NA	NA	NA	NA	NA	NA	NA	21380165	21374152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_21375628_21376119_21376171_21378045_21378135_21379054_21379134_21380033
ONT_simulated_read_17593336	chr6	-	1759	14	ISM	ENSMUSG00000038429.11	ENSMUST00000047510.10	3213	20	5936	597	5887	-578	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCAAGGACCTGGGCTAC	NA	NA	NA	NA	NA	NA	NA	NA	124800511	124792578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795437_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415
ONT_simulated_read_17595447	chr15	+	1515	13	NNC	ENSMUSG00000022550.19	novel	2040	15	NA	NA	16	-628	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGAAACATCAACACAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	76460604	76479388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477635_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213
ONT_simulated_read_17595502	chr12	-	3762	19	ISM	ENSMUSG00000042350.14	ENSMUST00000043169.14	5446	20	19531	1400	-216	-1385	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGGCAGTGCTAAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	84998143	84966323	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_84967355_84967453_84967630_84968031_84968122_84970633_84970693_84970769_84970900_84972467_84972594_84973007_84973188_84974074_84974185_84974642_84974719_84976891_84977014_84977122_84977265_84978472_84978551_84980925_84981174_84981343_84981525_84981727_84981898_84986933_84987172_84988504_84988732_84990105_84990167_84997826
ONT_simulated_read_17595850	chr14	-	1549	13	ISM	ENSMUSG00000033166.12	ENSMUST00000042471.11	5150	21	304	10667	304	-10667	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTGTTATGATTCATTTC	NA	NA	NA	NA	NA	NA	NA	NA	99336902	99323308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_99323395_99323482_99323548_99324824_99324927_99325169_99325287_99326197_99326345_99327053_99327192_99327400_99327515_99328763_99328929_99332608_99332777_99334192_99334267_99335020_99335215_99336118_99336277_99336881
ONT_simulated_read_17596115	chr3	+	764	5	FSM	ENSMUSG00000027942.18	ENST00000362076.8	726	5	-38	0	33	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACGTGCAGCCGTGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	89960210	89969148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89960427_89963513_89963632_89965791_89965959_89966048_89966108_89968944
ONT_simulated_read_17599648	chr18	-	817	9	ISM	ENSMUSG00000025420.14	ENST00000356157.12	1557	15	8231	2693	8231	-2693	internal_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATCTACCACTGGCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	77098718	77067778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_77067858_77082089_77082201_77085294_77085387_77090126_77090246_77090432_77090497_77092418_77092518_77095203_77095282_77095480_77095580_77098642
ONT_simulated_read_17600565	chr7	+	1016	1	FSM	ENSMUSG00000081788.3	ENSMUST00000121016.3	2071	1	0	1055	0	-1055	mono-exon	FALSE	NA	NA	NA	NA	NA	688	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAGGAGCAGGAGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	63192226	63193242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_63192200_63193200
ONT_simulated_read_17602087	chr13	+	253	2	FSM	ENSMUSG00000021481.12	ENST00000512315.5	282	2	0	29	0	-29	multi-exon	FALSE	canonical	NA	NA	NA	NA	1003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTCAGTGGCTTCAAACACA	NA	NA	NA	NA	NA	NA	NA	NA	55253145	55278413	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_55253332_55278346
ONT_simulated_read_17602290	chr7	-	383	3	ISM	ENSMUSG00000025486.18	ENST00000532956.5	834	5	1720	0	1457	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	280	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAACACGTTTACAAACATG	NA	NA	NA	NA	NA	NA	NA	NA	140456340	140443897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_140443997_140444887_140445098_140456266
ONT_simulated_read_17603382	chr2	+	374	1	ISM	ENSMUSG00000026960.7	ENSMUST00000028336.7	2548	4	0	26759	0	-26759	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGCTGCTGTTCGCCGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	53082099	53082473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_53082100_53082500
ONT_simulated_read_17605941	chr5	-	411	1	FSM	ENSMUSG00000067719.6	ENSMUST00000088299.6	309	1	0	-102	0	102	mono-exon	FALSE	NA	NA	NA	NA	NA	1379	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAACAAAACAA	NA	NA	NA	NA	NA	NA	NA	NA	24786860	24786449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_24786400_24786900
ONT_simulated_read_17606047	chr1	-	369	1	FSM	ENSMUSG00000084093.2	ENSMUST00000118577.2	171	1	-1	-197	-1	197	mono-exon	FALSE	NA	NA	NA	NA	NA	446	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCACAGACCACATGAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	166259445	166259076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_166259100_166259400
ONT_simulated_read_17606061	chr16	+	350	5	ISM	ENSMUSG00000038084.17	ENST00000361150.6	4188	29	7683	47268	997	-46301	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAGAAGGACGACAAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	29405831	29424393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_29405885_29408498_29408567_29416403_29416515_29421029_29421084_29424329
ONT_simulated_read_1761381	chr5	-	704	3	ISM	ENSMUSG00000015653.14	ENSMUST00000164219.8	10089	4	5237	8837	5237	-1938	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGACCTTCCACGTGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	5727826	5723667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_5723697_5725840_5726006_5727316
ONT_simulated_read_1761482	chr16	-	1628	1	ISM	ENSMUSG00000022848.9	ENSMUST00000023554.9	5395	9	71356	2311	71356	-2311	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATCTTTCTTAAAGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	35518370	35516742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_35516700_35518400
ONT_simulated_read_17616319	chr7	+	281	1	Antisense	novelGene_ENSMUSG00000030680.7_AS_novelGene_ENSMUSG00000107068.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCGCAGGAAACACGCTCG	NA	NA	NA	NA	NA	NA	NA	NA	126616027	126616308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr7_+_126616000_126616300
ONT_simulated_read_17617742	chr18	+	404	3	ISM	ENSMUSG00000024238.16	ENSMUST00000025081.13	5801	8	27	26648	27	-26648	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGCACACCAGAAGCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	5591890	5748819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_5591968_5705042_5705244_5748693
ONT_simulated_read_17619824	chr19	-	631	6	ISM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	10752	5386	10752	-5386	internal_fragment	TRUE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAACTCATTGAGCTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	5334731	5329345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602
ONT_simulated_read_17620056	chr19	-	1245	10	NNC	ENSMUSG00000024926.11	novel	1386	13	NA	NA	1075	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACACTACCCATTGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	5658982	5653445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657984_5658282_5658358_5658665_5658741_5658829
ONT_simulated_read_1762304	chr14	-	2400	13	ISM	ENSMUSG00000021820.19	ENSMUST00000080440.14	3604	20	28521	652	28457	-652	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCAGGAAGAAAAGGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	20815577	20785602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20795859_20795929_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463
ONT_simulated_read_17625892	chr5	+	342	1	ISM	ENSMUSG00000029108.15	ENSMUST00000191837.6	8785	3	3946	410976	0	-7211	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAGTAACAAGTACAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	57879254	57879596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_57879300_57879600
ONT_simulated_read_17626296	chr7	+	1153	6	ISM	ENSMUSG00000025326.13	ENSMUST00000200758.4	9856	13	423	35185	423	-13468	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCTCAAGGAAAACTGAT	NA	NA	NA	NA	NA	NA	NA	NA	58878972	58926099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_58879020_58890714_58890782_58893097_58893218_58896920_58896966_58921694_58921985_58925515
ONT_simulated_read_17628221	chr5	-	631	1	ISM	ENSMUSG00000039244.11	ENSMUST00000046418.3	2208	6	13388	135	13388	-135	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGGCACAGCTCAGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	143287727	143287096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_143287100_143287700
ONT_simulated_read_17628310	chr9	+	597	3	ISM	ENSMUSG00000032583.8	ENSMUST00000035202.4	2042	6	0	2877	0	-2859	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCCAGGGCGCAGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	107765380	107777461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_107765602_107775870_107776011_107777225
ONT_simulated_read_17628354	chr7	-	2915	1	ISM	ENSMUSG00000005610.18	ENSMUST00000162415.9	7995	22	10300	2066	10287	-2066	mono-exon	FALSE	NA	NA	NA	NA	NA	283	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCGTTGGTAGAACCAATC	NA	NA	NA	NA	NA	NA	NA	NA	110671937	110669022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_110669000_110671900
ONT_simulated_read_17628637	chr8	-	132	2	ISM	ENSMUSG00000038215.16	ENSMUST00000040330.15	1690	11	5392	12672	5392	-12672	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAAAATTGAAATTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	56998500	56997228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_56997300_56998439
ONT_simulated_read_1762920	chr6	+	763	1	NIC	ENSMUSG00000034930.17	novel	2597	13	NA	NA	0	-14703	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCCTCTGCAGCTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	83114090	83114853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_+_83114100_83114900
ONT_simulated_read_17629397	chr4	+	1400	11	ISM	ENSMUSG00000028405.10	ENSMUST00000102973.4	3832	21	20638	15513	20638	-15513	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGCGGGGCTGAGTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	40163718	40182825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_40163846_40164608_40164778_40167053_40167192_40175664_40175735_40175841_40176026_40176495_40176636_40177778_40177951_40178972_40179074_40180171_40180289_40181382_40181543_40182803
ONT_simulated_read_17629706	chr10	-	1335	12	ISM	ENSMUSG00000035189.18	ENSMUST00000182790.8	4018	27	264289	754	264125	-390	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAATTTTGTTTACTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	88828873	88785617	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_88785645_88788051_88788248_88790526_88790633_88796443_88796564_88807129_88807278_88808600_88808754_88814537_88814681_88816805_88816904_88817020_88817079_88818038_88818151_88819616_88819654_88828736
ONT_simulated_read_17632855	chr2	+	757	7	ISM	ENSMUSG00000059540.16	ENSMUST00000103042.10	1183	10	2856	1137	2856	-1137	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCAACAAGTGCAGGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	181324958	181328727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_181325069_181325340_181325447_181326235_181326327_181327584_181327716_181327982_181328040_181328390_181328546_181328620
ONT_simulated_read_17633388	chrX	-	864	1	ISM	ENSMUSG00000036022.16	ENSMUST00000071023.12	4334	9	24457	1070	23672	-739	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATCACTGTCATAAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	52334225	52333361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_52333400_52334200
ONT_simulated_read_17633469	chr11	-	924	8	ISM	ENSMUSG00000034187.19	ENSMUST00000103075.11	3766	21	92007	1297	92007	-1297	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGATGTTCTCGTGTTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	103752875	103713904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718
ONT_simulated_read_17635528	chr3	+	809	13	ISM	ENSMUSG00000027966.21	ENST00000512756.5	5420	65	98777	65201	98777	-65201	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTGTAAGTATGAAGATAA	NA	NA	NA	NA	NA	NA	NA	NA	113923037	113947339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_113923077_113925207_113925316_113926784_113926839_113932048_113932103_113932226_113932272_113932392_113932447_113932569_113932615_113936692_113936747_113941418_113941473_113945023_113945078_113946257_113946366_113946747_113946838_113947289
ONT_simulated_read_17637099	chr2	-	2050	10	ISM	ENSMUSG00000039536.17	ENSMUST00000109238.9	2976	12	32699	527	32537	-401	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAGATCAAAAGATATGGT	NA	NA	NA	NA	NA	NA	NA	NA	166805486	166790593	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797051_166801942_166802042_166805348
ONT_simulated_read_17637340	chr1	-	221	1	ISM	ENSMUSG00000026239.15	ENSMUST00000027444.15	1159	5	39333	0	39333	0	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTGGACTGTGACTCT	NA	NA	NA	NA	NA	NA	NA	NA	86470936	86470715	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_86470700_86470900
ONT_simulated_read_17638775	chr2	+	307	1	ISM	ENSMUSG00000039849.7	ENSMUST00000041643.5	5780	17	12895	1896	12895	-1896	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTACCTTGCTCATACT	NA	NA	NA	NA	NA	NA	NA	NA	164734171	164734478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_164734200_164734500
ONT_simulated_read_17639171	chr18	-	185	2	ISM	ENSMUSG00000042211.8	ENST00000513826.1	3483	20	7368	26720	7368	-26627	internal_fragment	FALSE	canonical	NA	NA	NA	NA	164	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACATGAAGTGGGTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	62666719	62663852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_62663898_62666579
ONT_simulated_read_17640691	chr13	-	581	1	NIC	ENSMUSG00000021567.16	novel	4016	10	NA	NA	25480	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1382	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAACAAGCACTCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	73969657	73969076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_73969100_73969700
ONT_simulated_read_17642166	chr11	-	1158	1	NIC	ENSMUSG00000035575.12	novel	2308	20	NA	NA	26269	-1000	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACAGGCCAAGAATGGCAT	NA	NA	NA	NA	NA	NA	NA	NA	79826936	79825778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_79825800_79826900
ONT_simulated_read_17645172	chr5	-	550	1	ISM	ENSMUSG00000029287.15	ENSMUST00000031224.15	6087	17	179907	2603	105357	0	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCCATAGCCAATCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	107257588	107257038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_107257000_107257600
ONT_simulated_read_17645228	chr1	+	1478	13	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	44185	120	44185	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGATTGACGAATCTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	150313185	150325566	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_150313238_150314832_150315028_150315817_150315950_150316189_150316281_150317809_150317995_150318934_150319004_150319085_150319181_150320118_150320226_150321618_150321715_150321835_150321993_150323262_150323382_150324893_150324990_150325482
ONT_simulated_read_17649020	chr13	+	1611	11	FSM	ENSMUSG00000005583.17	ENST00000625674.2	4440	11	0	2829	0	-156	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTGAGCAGCTGTAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	83652358	83810594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_83652496_83668503_83668600_83723656_83723850_83740896_83741101_83773588_83773727_83781173_83781361_83783540_83783589_83800932_83801106_83803625_83803756_83804335_83804472_83810425
ONT_simulated_read_17649925	chr6	+	532	6	ISM	ENSMUSG00000030330.16	ENST00000619641.4	1269	7	25	842	9	-197	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGACAACCAAACCTCGAG	NA	NA	NA	NA	NA	NA	NA	NA	125016807	125025173	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_125016861_125020916_125020989_125024173_125024289_125024441_125024551_125024755_125024904_125025138
ONT_simulated_read_17653807	chr5	-	844	1	ISM	ENSMUSG00000042121.17	ENSMUST00000159592.8	8436	15	50441	5516	46290	-418	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTCCAACCTGACCCGG	NA	NA	NA	NA	NA	NA	NA	NA	114081514	114080670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_114080700_114081500
ONT_simulated_read_17654167	chr1	-	1752	15	ISM	ENSMUSG00000026024.15	ENST00000680497.1	6542	33	28622	10322	2097	6820	internal_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTGCGGTGTATAGAATGA	NA	NA	NA	NA	NA	NA	NA	NA	59231210	59212425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_59212473_59214082_59214201_59217690_59217859_59218218_59218353_59219264_59219343_59219707_59219820_59222322_59222488_59222939_59223039_59224371_59224438_59224555_59224759_59225170_59225238_59225614_59225686_59226479_59226609_59226893_59227026_59231047
ONT_simulated_read_1765474	chr17	-	531	1	ISM	ENSMUSG00000040097.17	ENSMUST00000045517.10	2798	6	7831	0	7831	0	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTGTTTGACTACAG	NA	NA	NA	NA	NA	NA	NA	NA	23974918	23974387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_23974400_23974900
ONT_simulated_read_17655191	chr11	-	826	2	ISM	ENSMUSG00000018160.16	ENST00000394287.7	2815	18	34845	259	34511	-259	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTATTATCTTAGAAACTAG	NA	NA	NA	NA	NA	NA	NA	NA	98049270	98043241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_98043952_98049154
ONT_simulated_read_17657144	chr2	-	1122	12	ISM	ENSMUSG00000017754.14	ENSMUST00000109316.8	2226	15	3121	219	2570	-73	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCCCCACCCTCTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	164696341	164681656	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185
ONT_simulated_read_17662054	chr12	-	665	1	ISM	ENSMUSG00000034126.6	ENSMUST00000037788.6	5064	21	38630	1747	38238	437	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCTTCTGCTACTGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	87156046	87155381	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_87155400_87156000
ONT_simulated_read_17662121	chr5	-	371	1	ISM	ENSMUSG00000029015.10	ENSMUST00000115176.8	2768	18	50657	316	36028	1	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACAGGCCTCTTGCACTT	NA	NA	NA	NA	NA	NA	NA	NA	22016339	22015968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_22016000_22016300
ONT_simulated_read_17664648	chr5	-	1061	1	NIC	ENSMUSG00000029627.13	novel	1967	3	NA	NA	5421	26	mono-exon	FALSE	NA	NA	NA	NA	NA	309	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGTGACTCACGTGGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	145133010	145131949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_145131900_145133000
ONT_simulated_read_17665994	chr4	-	236	1	NIC	ENSMUSG00000028556.16	novel	7127	49	NA	NA	112599	-70670	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACTTTTACATGGGATGAA	NA	NA	NA	NA	NA	NA	NA	NA	98896400	98896164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_98896200_98896400
ONT_simulated_read_17670315	chr4	-	4521	5	ISM	ENSMUSG00000028411.16	ENST00000436040.7	838	6	2240	-3728	2240	-458	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTCTGGCACTCAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	40695107	40682839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851
ONT_simulated_read_17672018	chr18	-	1675	14	ISM	ENSMUSG00000024598.10	ENST00000508989.5	4704	33	125263	2184	125263	-2184	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAACGCCCAGTGTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	58217738	58196664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_58196702_58199065_58199189_58201337_58201464_58202199_58202326_58202478_58202602_58203019_58203146_58204864_58204991_58205625_58205755_58209051_58209178_58209683_58209912_58213217_58213344_58213795_58213847_58214379_58214518_58217648
ONT_simulated_read_17672149	chr8	-	152	1	ISM	ENSMUSG00000002343.12	ENSMUST00000019679.12	2263	8	8998	5145	8998	-5145	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTGCCACTAGCAACCAG	NA	NA	NA	NA	NA	NA	NA	NA	70678118	70677966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70678000_70678100
ONT_simulated_read_17672707	chr9	-	351	1	ISM	ENSMUSG00000053310.12	ENSMUST00000065668.12	1453	4	7600	462	870	-460	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAGAAAAAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	37456600	37456249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_37456200_37456600
ONT_simulated_read_17672780	chr19	+	1502	13	FSM	ENSMUSG00000083282.4	ENST00000310325.10	1714	13	-1	213	-1	-120	multi-exon	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTCAGGACCTATGTTG	NA	NA	NA	NA	NA	NA	NA	NA	4905280	4910499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_4905515_4905725_4905825_4906097_4906337_4906539_4906616_4907997_4908112_4908214_4908361_4908443_4908541_4908619_4908701_4909430_4909551_4909629_4909695_4909785_4909877_4910277_4910337_4910418
ONT_simulated_read_17673604	chr5	-	1911	7	ISM	ENSMUSG00000062604.12	ENSMUST00000088392.9	6491	15	90789	3636	90789	-3636	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACGAGGTGCCATGCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	23730743	23711897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_23712719_23718949_23719043_23719631_23719702_23723413_23723522_23723616_23723718_23729145_23729614_23730493
ONT_simulated_read_17676724	chr15	-	760	6	ISM	ENSMUSG00000022404.9	ENSMUST00000023040.9	1724	9	22725	700	22725	-700	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	317	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGAGACGCAGGTGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	81222288	81203811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136
ONT_simulated_read_1767720	chr11	-	655	1	ISM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	4727	0	4727	0	mono-exon	FALSE	NA	NA	NA	NA	NA	899	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	69558416	69557761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69557800_69558400
ONT_simulated_read_17678724	chr16	-	495	1	NIC	ENSMUSG00000061751.17	novel	10438	27	NA	NA	81763	-510	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCCCCAACTCGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	33834567	33834072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_33834100_33834600
ONT_simulated_read_17684347	chr2	+	632	5	ISM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	48444	318	48444	-318	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACTGATCTGATCTCACT	NA	NA	NA	NA	NA	NA	NA	NA	146903359	146919602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
ONT_simulated_read_17685167	chr11	+	1091	8	ISM	ENSMUSG00000034706.17	ENST00000582036.5	1667	11	-16	4018	-16	-4018	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTTTTATGGCCACCACG	NA	NA	NA	NA	NA	NA	NA	NA	114623720	114641249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_114623922_114625353_114625516_114626690_114626813_114629441_114629585_114631242_114631357_114635126_114635267_114635880_114636004_114641163
ONT_simulated_read_1768758	chr15	+	741	4	ISM	ENSMUSG00000022553.17	ENSMUST00000160853.8	1651	8	0	1367	0	-1366	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCTGGGTAAGGATGAACAG	NA	NA	NA	NA	NA	NA	NA	NA	76235493	76237206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76235860_76236666_76236753_76236845_76236975_76237046
ONT_simulated_read_17688290	chr6	-	4002	1	ISM	ENSMUSG00000045441.6	ENSMUST00000051065.6	8339	2	70865	4202	70865	-4202	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGATTAGAGATTTAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	59332414	59328412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_59328400_59332400
ONT_simulated_read_17688459	chr14	+	608	3	ISM	ENSMUSG00000025555.15	ENSMUST00000026635.8	4885	27	0	76439	0	-76439	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGAGGGCGACTACTTC	NA	NA	NA	NA	NA	NA	NA	NA	121272975	121444717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_121273338_121339400_121339595_121444665
ONT_simulated_read_17689724	chr8	-	455	1	ISM	ENSMUSG00000031502.12	ENSMUST00000033898.10	6615	52	112944	1005	112944	-1005	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCGCTTCATCCTGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	11249882	11249427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_11249400_11249900
ONT_simulated_read_17691432	chr12	+	852	1	FSM	ENSMUSG00000113617.2	ENSMUST00000221159.2	852	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCGCCTTTCCCTATGGAG	NA	NA	NA	NA	NA	NA	NA	NA	88301393	88302245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_88301400_88302200
ONT_simulated_read_17691687	chrX	+	782	4	ISM	ENSMUSG00000031353.14	ENST00000380084.8	2039	12	13682	-116	13682	116	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	364	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCTGTTAATTTCATCA	NA	NA	NA	NA	NA	NA	NA	NA	161557573	161561904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_161557626_161558731_161558790_161560767_161560879_161561343
ONT_simulated_read_17694684	chr13	+	1861	5	ISM	ENSMUSG00000037933.17	ENSMUST00000110085.11	4588	8	0	7301	0	-7294	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGACTGGGGACAACAGT	NA	NA	NA	NA	NA	NA	NA	NA	49495071	49533201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_49495387_49522904_49523118_49528692_49528846_49531365_49531828_49532483
ONT_simulated_read_17697953	chr5	-	508	1	ISM	ENSMUSG00000029388.15	ENSMUST00000031334.15	2013	9	7806	605	7806	-605	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCAAGCCAGACAGGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	124709388	124708880	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_124708900_124709400
ONT_simulated_read_17700472	chr14	+	976	6	ISM	ENSMUSG00000016831.13	ENSMUST00000022766.8	5350	10	0	9054	0	-9054	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGCTCCCAAGAAGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	52516602	52524804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_52516690_52516844_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757
ONT_simulated_read_17700738	chr18	+	1223	9	ISM	ENSMUSG00000024560.8	ENSMUST00000025444.8	2620	15	1740	1117	1740	-1117	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTCCATGTACCCCACAC	NA	NA	NA	NA	NA	NA	NA	NA	74350941	74353447	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_74351068_74351156_74351349_74351699_74351727_74351802_74352049_74352201_74352310_74352453_74352639_74352908_74353117_74353191_74353303_74353427
ONT_simulated_read_17701266	chr1	-	611	5	ISM	ENSMUSG00000041926.16	ENSMUST00000077340.14	2288	11	6666	4457	6666	-4457	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTCAACTCTCCATGTG	NA	NA	NA	NA	NA	NA	NA	NA	135205156	135194906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_135195021_135195820_135195935_135199266_135199503_135200099_135200217_135205126
ONT_simulated_read_17704052	chr5	+	305	1	FSM	ENSMUSG00000105031.2	ENSMUST00000199823.2	204	1	0	-101	0	101	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGCTGGGCTTGGGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	113905183	113905488	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_113905200_113905500
ONT_simulated_read_17704942	chr13	-	975	1	ISM	ENSMUSG00000038546.10	ENST00000011619.6	3364	13	77630	0	75258	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAGTGTCAGTTGAATTT	NA	NA	NA	NA	NA	NA	NA	NA	43557125	43556150	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_43556200_43557100
ONT_simulated_read_17706158	chr4	-	1368	1	ISM	ENSMUSG00000040550.18	ENSMUST00000117268.9	3266	7	14839	883	14762	-874	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAATGAAACGTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	14811748	14810380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_14810400_14811700
ONT_simulated_read_17710060	chr11	-	2503	20	ISM	ENSMUSG00000020929.15	ENSMUST00000173679.8	2889	27	12937	-216	12937	-112	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGAAAATGTTTAACCCT	NA	NA	NA	NA	NA	NA	NA	NA	102755603	102729410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533
ONT_simulated_read_17710817	chr15	-	545	1	ISM	ENSMUSG00000022634.10	ENSMUST00000080299.7	1676	4	51212	774	51212	-774	mono-exon	FALSE	NA	NA	NA	NA	NA	225	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATTACATAGTGCAAGC	NA	NA	NA	NA	NA	NA	NA	NA	93183477	93182932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_93182900_93183500
ONT_simulated_read_17711821	chr7	-	1590	7	ISM	ENSMUSG00000036634.16	ENST00000361922.8	2332	11	1120	1503	1120	-1165	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCATGTCCTGTACAGCC	NA	NA	NA	NA	NA	NA	NA	NA	30611172	30600120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_30600163_30600487_30600585_30601073_30601362_30606330_30606592_30607789_30608048_30608400_30608698_30610825
ONT_simulated_read_1771341	chr6	+	968	11	ISM	ENSMUSG00000030269.15	ENSMUST00000113146.9	2676	19	22782	3457	4778	-3263	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGTCTGTAAGTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	113237585	113254896	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113254750
ONT_simulated_read_17714095	chr1	-	2192	1	ISM	ENSMUSG00000025959.14	ENSMUST00000114086.8	7662	4	85737	4116	85728	-4116	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGACAGTTGGGGCATTT	NA	NA	NA	NA	NA	NA	NA	NA	64074913	64072721	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_64072700_64074900
ONT_simulated_read_17715084	chr15	+	538	5	NNC	ENSMUSG00000023051.12	novel	912	6	NA	NA	39	-408	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGCAGGCTTTCCATGTC	NA	NA	NA	NA	NA	NA	NA	NA	102426932	102431449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_102427038_102429572_102429649_102430158_102430232_102430415_102430534_102431283
ONT_simulated_read_17718739	chr12	-	419	1	ISM	ENSMUSG00000020993.10	ENST00000347691.9	1037	5	17564	253	17564	75	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGCTTAATTTTTATTGT	NA	NA	NA	NA	NA	NA	NA	NA	59090462	59090043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_59090000_59090500
ONT_simulated_read_17720762	chr2	-	582	4	ISM	ENSMUSG00000009555.17	ENSMUST00000120105.8	1565	7	2076	734	2076	-734	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACCTCATTGACAAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	32600203	32598189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_32598302_32599478_32599628_32599784_32599957_32600054
ONT_simulated_read_17721162	chr11	-	1023	6	ISM	ENSMUSG00000020173.18	ENSMUST00000174874.8	5451	15	68233	18136	68233	-18136	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTGTTCTCCAGTAGATG	NA	NA	NA	NA	NA	NA	NA	NA	12293911	12204813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_12204972_12206144_12206243_12216855_12217145_12256957_12257129_12259613_12259753_12293743
ONT_simulated_read_17722615	chr10	-	1182	4	ISM	ENSMUSG00000035864.15	ENST00000457153.6	4157	8	63676	2295	63676	-2293	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTCACAGGCAAATAGCA	NA	NA	NA	NA	NA	NA	NA	NA	108463241	108335805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_108336608_108340257_108340392_108419734_108419853_108463113
ONT_simulated_read_17724638	chr11	+	1080	1	FSM	ENSMUSG00000050288.7	ENSMUST00000057893.7	3663	1	0	2583	0	-2583	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGTCTCTGGATCCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	102495221	102496301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_102495200_102496300
ONT_simulated_read_17727658	chr15	+	1170	6	ISM	ENSMUSG00000009585.19	ENSMUST00000023054.14	1842	8	2725	304	2725	-304	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGCGCTGCCCACTCCC	NA	NA	NA	NA	NA	NA	NA	NA	79781948	79791803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_79782173_79782311_79782427_79789644_79789802_79790541_79790804_79791051_79791165_79791504
ONT_simulated_read_17728333	chr4	-	1228	1	NIC	ENSMUSG00000043962.17	novel	4266	11	NA	NA	28777	-309	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTGAAACATTTTCAGATG	NA	NA	NA	NA	NA	NA	NA	NA	126059411	126058183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_126058200_126059400
ONT_simulated_read_17730383	chr18	+	316	4	ISM	ENSMUSG00000042705.10	ENSMUST00000234961.2	792	6	-7	68029	-7	-68029	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTAGAGATGATTCATCT	NA	NA	NA	NA	NA	NA	NA	NA	47091920	47100845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806
ONT_simulated_read_17730657	chr1	-	1057	7	ISM	ENSMUSG00000026355.12	ENSMUST00000027601.11	2910	17	18255	253	18238	-250	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGAGGAGGATTTCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	128269146	128259579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021
ONT_simulated_read_1773392	chr5	+	1012	4	ISM	ENSMUSG00000079109.12	ENST00000644110.1	2262	12	6125	5198	6125	-5198	internal_fragment	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGCACCTAAAGGCGCAG	NA	NA	NA	NA	NA	NA	NA	NA	143856396	143862779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_143856427_143858833_143858919_143860294_143860451_143862038
ONT_simulated_read_17735718	chr3	-	781	8	ISM	ENSMUSG00000055436.19	ENST00000370951.5	2138	12	4780	2686	4780	-2686	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTACAGCACAGCCAGACG	NA	NA	NA	NA	NA	NA	NA	NA	157732495	157719626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361
ONT_simulated_read_1773683	chr9	-	1473	5	ISM	ENSMUSG00000050471.18	ENSMUST00000063782.12	1662	7	32335	0	32332	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGACAGCCTTCACCTTA	NA	NA	NA	NA	NA	NA	NA	NA	35146741	35128260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35146526
ONT_simulated_read_17738631	chr3	+	695	1	ISM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	50906	646	50906	-646	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTTTTAGAAACAGGT	NA	NA	NA	NA	NA	NA	NA	NA	8625325	8626020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_8625300_8626000
ONT_simulated_read_17741578	chr14	+	164	1	ISM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	0	3124	0	-1096	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGGAGCTTGCTCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	76741917	76742081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_76741900_76742100
ONT_simulated_read_17744908	chr4	-	125	1	FSM	ENSMUSG00000100863.2	ENSMUST00000122162.2	1009	1	0	884	0	-884	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCTCCACAGTGTGTACA	NA	NA	NA	NA	NA	NA	NA	NA	91694792	91694667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_91694700_91694800
ONT_simulated_read_17747485	chr5	-	2246	6	ISM	ENSMUSG00000001467.6	ENSMUST00000001507.5	3931	10	5448	669	5448	-669	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	316	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGATATGGAAGTGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	4149298	4131813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123
ONT_simulated_read_1774807	chr10	-	1489	8	ISM	ENSMUSG00000020166.16	ENSMUST00000164088.8	2618	14	49685	406	49685	-62	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTAATAAATGTGTACATT	NA	NA	NA	NA	NA	NA	NA	NA	116335383	116321475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246
ONT_simulated_read_17752714	chr1	+	515	1	ISM	ENSMUSG00000026269.15	ENSMUST00000027487.15	3337	11	8831	713	8831	-713	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTGGAAGCCAGCATCTG	NA	NA	NA	NA	NA	NA	NA	NA	92847335	92847850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_92847300_92847800
ONT_simulated_read_1775368	chr17	-	1806	1	ISM	ENSMUSG00000040688.17	ENSMUST00000126319.8	5226	22	6910	996	5420	-996	mono-exon	FALSE	NA	NA	NA	NA	NA	194	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCCGGGTATCACAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	24919724	24917918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24917900_24919700
ONT_simulated_read_17755034	chr8	-	1059	1	ISM	ENSMUSG00000092260.8	ENSMUST00000130458.8	2291	4	6692	573	6692	-573	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAGAGCTGGGCAGATA	NA	NA	NA	NA	NA	NA	NA	NA	70195920	70194861	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70194900_70195900
ONT_simulated_read_1775536	chr5	-	405	1	ISM	ENSMUSG00000032867.9	ENSMUST00000049474.9	5000	11	90095	0	90095	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGCTCGTGTCACACAG	NA	NA	NA	NA	NA	NA	NA	NA	118203434	118203029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_118203000_118203400
ONT_simulated_read_17758528	chr16	+	482	1	FSM	ENSMUSG00000071637.6	ENSMUST00000096232.6	3746	1	1130	2134	1130	-2134	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCAAAGCTATGTGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	15706279	15706761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_15706300_15706800
ONT_simulated_read_17759592	chr19	-	2363	8	ISM	ENSMUSG00000025200.8	ENSMUST00000026218.7	3581	14	10983	508	10983	-508	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCCCACCTCCTAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	44113332	44097583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_44099100_44101387_44101486_44102112_44102233_44102962_44103173_44109311_44109392_44110287_44110400_44111582_44111724_44113246
ONT_simulated_read_17759947	chr14	+	1076	5	ISM	ENSMUSG00000021770.12	ENSMUST00000022292.10	1574	6	17	863	17	-863	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCATCTGGAGCGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	21800615	21842507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_21800849_21825030_21825624_21830153_21830250_21833746_21833865_21842471
ONT_simulated_read_17762745	chr6	-	167	2	ISM	ENSMUSG00000032667.18	ENSMUST00000057792.9	2409	9	26032	4964	26032	-4964	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTTGAAGTATTTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	5272423	5269110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_5269179_5272324
ONT_simulated_read_17764748	chr14	-	2323	3	ISM	ENSMUSG00000022180.8	ENST00000469263.5	3304	6	44145	-7	2	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	254	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGATGGAGTTAATAATCAT	NA	NA	NA	NA	NA	NA	NA	NA	54975122	54959665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_54961709_54973180_54973335_54974996
ONT_simulated_read_17764864	chr9	-	511	6	ISM	ENSMUSG00000064145.13	ENSMUST00000013338.14	3924	16	39433	2403	39433	-2403	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGACAGAGGGGTAAGTGCC	NA	NA	NA	NA	NA	NA	NA	NA	108487146	108482543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095
ONT_simulated_read_17765108	chr8	-	1754	1	ISM	ENSMUSG00000040010.11	ENSMUST00000045557.10	3517	10	24617	174	24617	-174	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGCTGTGCCACCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	122609816	122608062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_122608100_122609800
ONT_simulated_read_17765403	chr11	+	897	4	ISM	ENSMUSG00000020459.15	ENSMUST00000093239.11	2741	14	0	11851	0	-11851	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAATTTAGCACTTACTA	NA	NA	NA	NA	NA	NA	NA	NA	29476456	29483397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225
ONT_simulated_read_17766263	chr7	+	1838	10	ISM	ENSMUSG00000055116.9	ENSMUST00000211770.2	2464	20	58553	-286	58553	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGTTCCCAATTGATAA	NA	NA	NA	NA	NA	NA	NA	NA	112892382	112913333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_112892503_112894650_112894801_112898393_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
ONT_simulated_read_17766836	chr4	-	1898	3	ISM	ENSMUSG00000028992.14	ENSMUST00000119921.8	2657	4	10656	616	10626	371	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATGGCAGCTCTCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	149559003	149552644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_149554240_149557741_149557926_149558884
ONT_simulated_read_1776744	chr19	+	2045	7	FSM	ENSMUSG00000025019.18	ENST00000676123.1	4713	7	-29	2697	0	-234	multi-exon	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTGCCTGTAGAGCCCG	NA	NA	NA	NA	NA	NA	NA	NA	41471075	41547986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_41471223_41516459_41516526_41516999_41517080_41534313_41534447_41540887_41541176_41544046_41544141_41546749
ONT_simulated_read_17768539	chr1	-	123	1	ISM	ENSMUSG00000042684.9	ENSMUST00000041874.9	1735	12	46512	396	33969	-119	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGTGTAAAGGAGGGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	153379279	153379156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_153379200_153379300
ONT_simulated_read_17770200	chr19	+	202	1	ISM	ENSMUSG00000015176.12	ENSMUST00000165017.2	3634	13	17	9447	17	-8370	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCAGATTTCTGCGGGAT	NA	NA	NA	NA	NA	NA	NA	NA	46064318	46064520	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_46064300_46064500
ONT_simulated_read_17771129	chr5	-	3062	1	ISM	ENSMUSG00000039737.12	ENSMUST00000151786.8	3893	6	17500	275	17500	-275	mono-exon	FALSE	NA	NA	NA	NA	NA	407	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATACCCGGGGAGAAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	136210317	136207255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_136207300_136210300
ONT_simulated_read_17773728	chr2	+	422	4	ISM	ENSMUSG00000027298.18	ENSMUST00000028763.10	3989	19	11332	5449	9302	-4378	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGAATGGATTCTGGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	119641326	119643136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_119641423_119642078_119642172_119642540_119642663_119643025
ONT_simulated_read_17775753	chr2	-	464	1	ISM	ENSMUSG00000016252.8	ENST00000395659.1	567	3	1421	3813	1421	-1073	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAACGGTCTGGAACATGAG	NA	NA	NA	NA	NA	NA	NA	NA	174304401	174303937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_174303900_174304400
ONT_simulated_read_17777531	chr18	-	2147	15	NIC	ENSMUSG00000041482.18	novel	8335	54	NA	NA	261573	22906	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAACCTGAGAACTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	63257767	63219684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_63219826_63223950_63224112_63225873_63226089_63226454_63226488_63232123_63232166_63235091_63235266_63239248_63239398_63241045_63241345_63242935_63243060_63246948_63247180_63247971_63248121_63250719_63250859_63251976_63252016_63254293_63254414_63257636
ONT_simulated_read_17779794	chr4	+	1270	11	ISM	ENSMUSG00000028869.14	ENSMUST00000030684.8	2366	16	66	6976	66	-6976	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAGCAAAGCCAGAGTATAT	NA	NA	NA	NA	NA	NA	NA	NA	124923850	124942193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139
ONT_simulated_read_17781147	chr13	-	1029	8	NIC	ENSMUSG00000003062.14	novel	1268	9	NA	NA	21	0	combination_of_known_splicesites	TRUE	canonical	NA	NA	NA	NA	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTTGTTTCAATTCTC	NA	NA	NA	NA	NA	NA	NA	NA	19560806	19542011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_19542300_19543147_19543207_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548
ONT_simulated_read_17781156	chr1	+	1731	2	ISM	ENSMUSG00000026131.21	ENST00000370765.11	8776	24	18590	2603	18576	-2603	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCGTAGAGCCAGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	34217986	34220353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_34219580_34220215
ONT_simulated_read_17781487	chr9	+	596	5	ISM	ENSMUSG00000032178.15	ENSMUST00000216892.2	3684	19	48	12357	0	-12357	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCCTTCTGGACAAGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	21279298	21300733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601
ONT_simulated_read_17781683	chr5	-	505	3	ISM	ENSMUSG00000029270.11	ENSMUST00000031198.11	2721	5	72632	1944	72632	-1047	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATACCTCTCTGTATGGA	NA	NA	NA	NA	NA	NA	NA	NA	108062319	108057862	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_108058083_108059477_108059655_108062211
ONT_simulated_read_17783789	chr13	+	580	1	Antisense	novelGene_ENSMUSG00000025869.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTCTTACTCTGCAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	54732526	54733106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr13_+_54732500_54733100
ONT_simulated_read_17784013	chr10	-	1879	1	ISM	ENSMUSG00000020114.13	ENSMUST00000020315.13	7766	15	36876	2046	36876	-2046	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGTTAAGCCCCTAAACT	NA	NA	NA	NA	NA	NA	NA	NA	119039084	119037205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_119037200_119039100
ONT_simulated_read_17784098	chr4	-	1430	1	NIC	ENSMUSG00000041459.16	novel	6495	7	NA	NA	7567	360	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTGCAATAGGGATGAAG	NA	NA	NA	NA	NA	NA	NA	NA	148702252	148700822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_148700800_148702300
ONT_simulated_read_17784476	chr4	-	1461	9	ISM	ENSMUSG00000028789.17	ENSMUST00000106068.8	2049	11	868	343	-93	-12	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCATGTGAGCGGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	128855353	128826157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_128826285_128828249_128828465_128839849_128839963_128841251_128841412_128842584_128842751_128843382_128843518_128844392_128844566_128853576_128853751_128855155
ONT_simulated_read_17785878	chr16	-	2028	1	ISM	ENSMUSG00000022828.11	ENSMUST00000023525.9	3084	5	27972	0	27972	0	mono-exon	FALSE	NA	NA	NA	NA	NA	185	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTGGTTATACTCACTAA	NA	NA	NA	NA	NA	NA	NA	NA	37332179	37330151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_37330200_37332200
ONT_simulated_read_17786132	chr17	-	1854	1	ISM	ENSMUSG00000024142.16	ENSMUST00000234941.2	3223	9	3128	523	3111	-519	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAAGGGGCTGAGGATGGT	NA	NA	NA	NA	NA	NA	NA	NA	24694901	24693047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24693000_24694900
ONT_simulated_read_17788091	chr3	+	1076	10	ISM	ENSMUSG00000027710.15	ENST00000681367.1	1856	17	7061	1410	7061	-1410	internal_fragment	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTACTGGAACATCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	36130917	36143673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_36131046_36132586_36132661_36134369_36134446_36135959_36136031_36136257_36136378_36139562_36139692_36141868_36141949_36142636_36142764_36142963_36143042_36143480
ONT_simulated_read_17792022	chr6	-	362	3	ISM	ENSMUSG00000079477.10	ENSMUST00000095048.6	1275	6	14581	568	14581	-144	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATTCCCTGAACCCATCA	NA	NA	NA	NA	NA	NA	NA	NA	87982184	87977489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_87977513_87981152_87981282_87981974
ONT_simulated_read_17794906	chr10	-	1344	8	ISM	ENSMUSG00000019792.9	ENSMUST00000019927.7	2359	13	10640	490	10640	-490	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGATACTCAGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	30466105	30410710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020
ONT_simulated_read_17795875	chr13	+	549	1	ISM	ENSMUSG00000012422.15	ENSMUST00000161568.8	8689	4	0	22586	0	-14990	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGATAGGTCCAACCGGACC	NA	NA	NA	NA	NA	NA	NA	NA	90237241	90237790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_90237200_90237800
ONT_simulated_read_17797525	chr9	+	893	8	ISM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	0	1548	0	-1544	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTGATCCGAGAAGAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	108539296	108560292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108539532_108546964_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247
ONT_simulated_read_17800254	chr2	-	412	1	ISM	ENSMUSG00000035778.18	ENSMUST00000079424.11	3254	6	29850	2193	20544	-263	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTTTGGAGGAACGCCT	NA	NA	NA	NA	NA	NA	NA	NA	35292795	35292383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_35292400_35292800
ONT_simulated_read_1780094	chr11	-	1182	3	ISM	ENSMUSG00000004748.6	ENSMUST00000004868.6	1411	4	928	0	773	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTTCATTTCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	4044517	4041479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_4042300_4043800_4044034_4044388
ONT_simulated_read_17801098	chr3	-	396	2	ISM	ENSMUSG00000015748.14	ENST00000519029.1	1945	14	4110	14220	4110	-14220	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCTAATACCTTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	95754896	95752357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95752544_95754686
ONT_simulated_read_17803062	chr9	-	1123	11	ISM	ENSMUSG00000032468.12	ENST00000485396.5	1911	20	48089	-105	48066	105	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATCTCGGATTCATCTTG	NA	NA	NA	NA	NA	NA	NA	NA	99402636	99362658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_99362831_99365152_99365247_99366018_99366092_99369916_99370013_99378203_99378300_99379295_99379446_99381345_99381439_99384564_99384652_99387317_99387400_99387702_99387786_99402539
ONT_simulated_read_17803546	chr9	-	2033	4	ISM	ENSMUSG00000019471.11	ENSMUST00000019615.11	7851	8	7880	5056	7880	-5056	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	175	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGCAGGTCTTGTTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	21053398	21049573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306
ONT_simulated_read_17803969	chr8	+	1399	1	FSM	ENSMUSG00000110499.2	ENSMUST00000211865.2	1915	1	0	516	0	-516	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGACTGTTGTGTGATT	NA	NA	NA	NA	NA	NA	NA	NA	94775408	94776807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_94775400_94776800
ONT_simulated_read_1780586	chr11	+	261	4	ISM	ENSMUSG00000018572.11	ENSMUST00000018716.10	2006	5	217	1633	118	-1389	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCCCGTCGGACCTTCGA	NA	NA	NA	NA	NA	NA	NA	NA	69886819	69889202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889126
ONT_simulated_read_17807683	chr19	-	1635	13	ISM	ENSMUSG00000041360.9	ENSMUST00000076219.6	3471	18	7078	1279	7078	-1279	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCTCTGTGGTTGAATG	NA	NA	NA	NA	NA	NA	NA	NA	27400147	27367376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053
ONT_simulated_read_17807817	chr12	-	818	5	ISM	ENSMUSG00000021287.13	ENSMUST00000021715.6	2422	8	3912	1255	38	30	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACAGTGAGACCAGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	111776363	111770881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_111771107_111771177_111771225_111771348_111771562_111774266_111774422_111776185
ONT_simulated_read_17808419	chr12	-	1386	1	ISM	ENSMUSG00000037169.16	ENSMUST00000043396.15	2674	3	4324	112	3026	-107	mono-exon	FALSE	NA	NA	NA	NA	NA	492	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCAAAGTTCTGTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	12987591	12986205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_12986200_12987600
ONT_simulated_read_17810362	chr11	-	684	3	ISM	ENSMUSG00000020737.13	ENST00000356033.8	765	4	11126	0	11126	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGATGTCCTTGGCTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	115394001	115388683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115389126_115392830_115392929_115393857
ONT_simulated_read_17811522	chr10	+	678	6	ISM	ENSMUSG00000019794.14	ENSMUST00000019929.13	1774	11	22875	1779	22875	-1779	internal_fragment	TRUE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTACTTCTCTCACATTT	NA	NA	NA	NA	NA	NA	NA	NA	7624638	7637134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_7624662_7627307_7627414_7628507_7628667_7635460_7635588_7636498_7636634_7637006
ONT_simulated_read_17812100	chr12	-	663	7	ISM	ENSMUSG00000021028.9	ENSMUST00000021416.9	1512	9	5337	460	1800	-418	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCCCTCAAACGAGCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	56387342	56375547	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_56375585_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169
ONT_simulated_read_17814058	chr19	-	1181	4	ISM	ENSMUSG00000025024.8	ENSMUST00000237529.2	1480	6	5445	0	5445	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTAGGATGTGCGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	53373027	53368310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_53369033_53369671_53369826_53371987_53372150_53372884
ONT_simulated_read_17817097	chr15	-	2217	15	ISM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	6214	660	1760	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCGCCTGACTGGAGTA	NA	NA	NA	NA	NA	NA	NA	NA	98554556	98543674	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482
ONT_simulated_read_17819390	chr4	+	701	5	NIC	ENSMUSG00000028478.19	novel	676	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGAAACACTACGTCTAC	NA	NA	NA	NA	NA	NA	NA	NA	44012685	44032582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_+_44013003_44025448_44025561_44030214_44030269_44031399_44031436_44032400
ONT_simulated_read_17819588	chr4	-	468	5	ISM	ENSMUSG00000028218.20	ENST00000620645.1	821	7	2903	40	2903	-40	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAGATGATGAAGAATTA	NA	NA	NA	NA	NA	NA	NA	NA	12168311	12153938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_12153979_12155648_12155769_12157650_12157765_12164087_12164193_12168222
ONT_simulated_read_17820300	chr17	+	414	2	ISM	ENSMUSG00000023067.15	ENSMUST00000119901.9	922	3	0	1014	0	-890	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACTTCCTCTGCCCTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	29309952	29317661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_29310076_29317370
ONT_simulated_read_17821035	chr18	-	1187	11	ISM	ENSMUSG00000024556.5	ENST00000639255.1	1434	13	7188	-2	7188	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATTTATGCCACTTTACA	NA	NA	NA	NA	NA	NA	NA	NA	73931049	73906196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_73906300_73908449_73908521_73914112_73914216_73918765_73918909_73921424_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73929384_73929461_73930899
ONT_simulated_read_17827286	chr5	-	1768	17	ISM	ENSMUSG00000025745.13	ENSMUST00000156859.3	4017	20	200	3165	200	-3165	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGCTGGCAGACGAAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	30359960	30326466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
ONT_simulated_read_1782965	chr10	-	420	1	ISM	ENSMUSG00000074785.6	ENSMUST00000099337.5	7302	31	151545	2005	36337	0	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATCTAAGTGGTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	94629152	94628732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_94628700_94629200
ONT_simulated_read_17833307	chr19	+	2330	17	ISM	ENSMUSG00000024981.7	ENSMUST00000043150.6	4243	22	0	5921	0	-5921	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGCTACCTAAAGGACCC	NA	NA	NA	NA	NA	NA	NA	NA	55241800	55280231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_55242599_55257075_55257261_55261200_55261310_55266338_55266404_55266512_55266615_55267895_55267996_55268872_55269052_55269767_55269801_55269881_55269934_55270904_55270979_55271739_55271818_55272834_55272970_55276259_55276395_55277236_55277333_55279577_55279651_55279849_55279939_55280204
ONT_simulated_read_17833836	chr4	-	988	6	ISM	ENSMUSG00000028530.15	ENSMUST00000102781.10	4906	25	73626	25366	73626	-25366	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAACTGAAGCGGAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	101048853	101034929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_101034954_101036651_101036992_101038976_101039141_101041533_101041688_101046275_101046400_101048671
ONT_simulated_read_17834026	chr1	+	1510	5	ISM	ENSMUSG00000026578.7	ENSMUST00000027867.7	1909	6	0	1510	0	-1510	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGGAGTGTTTGTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	164103153	164113906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_164103331_164105742_164105884_164107435_164108384_164109959_164110107_164113809
ONT_simulated_read_17834068	chr17	-	425	1	ISM	ENSMUSG00000051977.17	ENSMUST00000167994.10	3438	10	17966	1832	17607	-194	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGGAGAAGCCCTATGTT	NA	NA	NA	NA	NA	NA	NA	NA	15765597	15765172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_15765200_15765600
ONT_simulated_read_17837024	chr11	-	1586	1	ISM	ENSMUSG00000020740.14	ENSMUST00000019135.14	3816	17	18211	0	9154	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	NA	NA	NA	NA	NA	NA	NA	NA	115476666	115475080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115475100_115476700
ONT_simulated_read_17837407	chr5	+	744	6	ISM	ENSMUSG00000042744.17	ENST00000550722.5	15239	76	65713	75800	65713	-75781	internal_fragment	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGCCTGATGAGAACGAG	NA	NA	NA	NA	NA	NA	NA	NA	121424292	121430859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_121424526_121424782_121424929_121427629_121427701_121429257_121429364_121430111_121430233_121430792
ONT_simulated_read_17838924	chr1	+	786	6	ISM	ENSMUSG00000026201.13	ENSMUST00000027401.11	2876	8	402	1991	4	-416	internal_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTACGATATGGTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	75187883	75190259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219
ONT_simulated_read_17840245	chr16	+	1677	1	ISM	ENSMUSG00000089774.3	ENSMUST00000113975.3	10913	2	19740	7735	19740	-7735	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTTGCCAAGAGAAAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	91874949	91876626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_91874900_91876600
ONT_simulated_read_17840329	chr12	-	795	2	ISM	ENSMUSG00000021025.9	ENST00000557140.5	1302	6	1889	-29	1889	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	348	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGTCCCGCTCGTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	55537425	55536194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_55536755_55537190
ONT_simulated_read_17841954	chr1	-	1208	1	ISM	ENSMUSG00000033845.14	ENSMUST00000130201.8	1894	5	11215	82	11215	-77	mono-exon	FALSE	NA	NA	NA	NA	NA	292	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAGCACCCAAGTCTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	4844718	4843510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_4843500_4844700
ONT_simulated_read_1784247	chrX	+	894	6	ISM	ENSMUSG00000031353.14	ENSMUST00000112326.8	1430	10	-41	3665	0	-3665	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGACCAAAGGAAGGCAAAA	NA	NA	NA	NA	NA	NA	NA	NA	161543416	161555226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200
ONT_simulated_read_17852570	chr5	+	1378	9	ISM	ENSMUSG00000028986.13	ENSMUST00000163409.5	2857	10	25	3809	25	-3802	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTGGAGGCCAATGGCC	NA	NA	NA	NA	NA	NA	NA	NA	24305645	24361981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_24305873_24331819_24331923_24332666_24332761_24332977_24333103_24339961_24340138_24343303_24343479_24346148_24346292_24354122_24354364_24361887
ONT_simulated_read_17854869	chr12	-	515	1	ISM	ENSMUSG00000114139.2	ENSMUST00000222057.2	1283	3	2823	291	2823	-291	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATACTGTGGTATCCTT	NA	NA	NA	NA	NA	NA	NA	NA	22880539	22880024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_22880000_22880500
ONT_simulated_read_17855706	chr12	-	1555	11	ISM	ENSMUSG00000021022.10	ENSMUST00000021410.10	4216	14	4482	2248	4482	-2248	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGAGACATGGTCTCA	NA	NA	NA	NA	NA	NA	NA	NA	55345301	55328023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195
ONT_simulated_read_17857287	chr2	-	799	1	ISM	ENSMUSG00000038324.14	ENSMUST00000041059.12	3204	19	57278	37	57226	0	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTATTAAAGAACTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	155477026	155476227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155476200_155477000
ONT_simulated_read_17860618	chr17	-	521	1	NIC	ENSMUSG00000024007.16	novel	1462	4	NA	NA	12460	-403	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACATCCCACGCAAAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	29470700	29470179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_29470200_29470700
ONT_simulated_read_17861048	chr2	-	1289	11	ISM	ENSMUSG00000070730.12	ENSMUST00000094695.12	2249	13	2970	620	2970	-620	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGAGTTCAGGAAGCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	118984545	118968101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_118968234_118968827_118968909_118969519_118969574_118969832_118969932_118970524_118970603_118970740_118970817_118973108_118973170_118976818_118976922_118977789_118978076_118983856_118984001_118984370
ONT_simulated_read_17862292	chr9	-	1570	1	ISM	ENSMUSG00000074829.11	ENSMUST00000177714.8	2623	4	18603	720	18603	-720	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCGAGACAGGGTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	124056723	124055153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_124055200_124056700
ONT_simulated_read_17863196	chr16	-	542	1	ISM	ENSMUSG00000075330.5	ENSMUST00000100083.5	1116	2	7156	0	7156	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTCTTTATTAATCAC	NA	NA	NA	NA	NA	NA	NA	NA	19695858	19695316	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_19695300_19695900
ONT_simulated_read_17863311	chr10	-	198	1	FSM	ENSMUSG00000094955.3	ENSMUST00000178135.3	75	1	0	-123	0	123	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTGCGATCGCCTGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	43332497	43332299	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_43332300_43332500
ONT_simulated_read_17866440	chrX	-	2709	11	ISM	ENSMUSG00000031392.19	ENSMUST00000068286.12	2537	15	971	494	801	-494	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTAGCCCAGGGCTATAG	NA	NA	NA	NA	NA	NA	NA	NA	73066550	73058025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066268_73066454
ONT_simulated_read_17867442	chr17	+	888	8	ISM	ENSMUSG00000024188.17	ENSMUST00000025023.15	1700	9	55	1355	0	-1355	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTTCAAGATCTATCACA	NA	NA	NA	NA	NA	NA	NA	NA	26471924	26498338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306
ONT_simulated_read_17867876	chr6	+	2782	25	ISM	ENSMUSG00000001376.18	ENSMUST00000001412.17	3788	28	19430	617	19390	-401	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCAACTGTGTGTGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	3517811	3602914	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_3517861_3519216_3519271_3520206_3520278_3522255_3522374_3522682_3522719_3524092_3524176_3532157_3532201_3533471_3533571_3536831_3536973_3545509_3545643_3551012_3551105_3554995_3555091_3555367_3555467_3562267_3562359_3565515_3565693_3567734_3567854_3571001_3571109_3578793_3578916_3588005_3588087_3592426_3592576_3594017_3594115_3594742_3594902_3598471_3598594_3600127_3600318_3602659
ONT_simulated_read_17868420	chr7	-	888	1	NIC	ENSMUSG00000054499.10	novel	1828	5	NA	NA	15927	-204	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGACAGACTTGCCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	24903357	24902469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_24902500_24903400
ONT_simulated_read_17868783	chr11	-	1006	8	ISM	ENSMUSG00000020792.16	ENST00000634349.1	2068	19	1440	6097	1439	-5072	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCAGGAAAGCCATCATCC	NA	NA	NA	NA	NA	NA	NA	NA	116195843	116186105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_116186153_116186369_116186516_116187555_116187625_116188396_116188490_116191091_116191260_116191929_116192153_116195402_116195509_116195689
ONT_simulated_read_17868881	chr1	-	1633	12	ISM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	1870	5022	1870	-5022	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATATTATTGAATACCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	178163492	178156929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446
ONT_simulated_read_17869001	chr4	-	712	6	ISM	ENSMUSG00000028232.14	ENSMUST00000029891.12	2690	8	5411	1466	-5184	26	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCGCTTTCATAAAGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	3569442	3550506	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3564092_3564258_3569363
ONT_simulated_read_17869028	chr10	+	320	1	ISM	ENSMUSG00000019975.13	ENSMUST00000020149.6	3232	3	12918	2363	12918	-2363	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCACACTTGCCAACCATA	NA	NA	NA	NA	NA	NA	NA	NA	90931836	90932156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_90931800_90932200
ONT_simulated_read_17871189	chr5	-	880	7	ISM	ENSMUSG00000029472.14	ENSMUST00000199406.5	2413	17	21835	115	21835	-111	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCCCATGGGGTGCCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	122937508	122925904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_122926082_122926364_122926528_122929670_122929799_122929889_122929998_122931499_122931622_122932479_122932555_122937401
ONT_simulated_read_1787169	chr17	-	161	1	ISM	ENSMUSG00000052142.16	ENSMUST00000063824.14	3681	17	9641	3123	9411	-1737	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTCCAGCTCTGCACA	NA	NA	NA	NA	NA	NA	NA	NA	32612916	32612755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32612800_32612900
ONT_simulated_read_17872103	chr2	+	688	1	ISM	ENSMUSG00000000826.17	ENSMUST00000072334.12	6578	5	28841	5120	28379	423	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCAGGTATGCCCCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	181191118	181191806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_181191100_181191800
ONT_simulated_read_17872347	chr4	+	2087	9	NNC	ENSMUSG00000028914.14	novel	3897	9	NA	NA	98	580	intron_retention	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTCCAAGTTACCAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	141521020	141541578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_+_141521298_141523748_141524146_141531131_141531167_141532672_141532850_141533140_141533231_141534425_141534574_141538849_141539030_141539517_141539628_141540905
ONT_simulated_read_17874367	chr4	+	1108	12	NIC	ENSMUSG00000035683.14	novel	2955	18	NA	NA	-21	-17082	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACGCAGCATCTAAATCAC	NA	NA	NA	NA	NA	NA	NA	NA	44303567	44347149	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_+_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44347123
ONT_simulated_read_17874992	chr15	-	511	4	ISM	ENSMUSG00000022559.9	ENSMUST00000023219.9	1710	9	1537	695	1537	-695	internal_fragment	TRUE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATGGCAGCCCCCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	76421398	76420615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76420672_76420772_76421005_76421092_76421207_76421289
ONT_simulated_read_17875074	chr2	-	1913	14	ISM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	62821	1333	62708	-1327	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGAATCTTCAATCTGG	NA	NA	NA	NA	NA	NA	NA	NA	126655329	126634817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_126634877_126637151_126637259_126637362_126637415_126639030_126639237_126639386_126639470_126639581_126639866_126641088_126641155_126641232_126641284_126643042_126643069_126644505_126644541_126646936_126647008_126649208_126649300_126652082_126652151_126654615
ONT_simulated_read_17876028	chr3	-	2135	11	FSM	ENSMUSG00000004591.17	ENST00000316005.11	2489	11	348	6	0	-6	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATAAGTGACTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	142587419	142515989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_142516627_142517287_142517364_142517674_142517819_142526297_142526408_142527279_142527466_142534641_142534856_142534944_142535091_142536257_142536376_142544968_142545124_142559174_142559476_142587371
ONT_simulated_read_17876601	chr2	-	1850	1	ISM	ENSMUSG00000027366.13	ENSMUST00000028844.11	5616	15	38958	2037	38958	-2037	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTTCTTCTAGGTACCG	NA	NA	NA	NA	NA	NA	NA	NA	126736197	126734347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_126734300_126736200
ONT_simulated_read_17877591	chr16	+	970	7	ISM	ENSMUSG00000022957.21	ENST00000381285.8	5513	38	110350	51172	-64330	-8971	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTTGTAAACCCCGATG	NA	NA	NA	NA	NA	NA	NA	NA	91636586	91658127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_91636731_91638376_91638499_91645609_91645858_91647693_91647854_91651460_91651544_91655096_91655264_91658081
ONT_simulated_read_17880982	chr15	-	266	1	NIC	ENSMUSG00000096956.3	novel	1486	2	NA	NA	2892	-940	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGATTGTCTGACCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	32241916	32241650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_32241600_32241900
ONT_simulated_read_178821	chr1	-	703	5	ISM	ENSMUSG00000037375.17	ENST00000545154.5	1481	11	22624	82781	22624	-82124	internal_fragment	TRUE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAGTCACTGTGGAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	192408634	192277259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_192277397_192343763_192343800_192376106_192376258_192399264_192399437_192408427
ONT_simulated_read_17890277	chr10	-	92	1	ISM	ENSMUSG00000020171.9	ENSMUST00000020382.8	1327	7	8696	498	8567	-49	mono-exon	FALSE	NA	NA	NA	NA	NA	446	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAATGAAATCAGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	117051716	117051624	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_117051600_117051700
ONT_simulated_read_17891296	chr15	-	650	1	ISM	ENSMUSG00000033356.4	ENSMUST00000049151.4	2840	9	19896	314	19896	-314	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGGCGAAACCTCGGTG	NA	NA	NA	NA	NA	NA	NA	NA	94421532	94420882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_94420900_94421500
ONT_simulated_read_17891698	chr10	-	977	7	ISM	ENSMUSG00000020069.17	ENSMUST00000020263.14	2213	10	5692	764	5645	-764	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	62853981	62851206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819
ONT_simulated_read_17892815	chr3	-	1833	1	NIC	ENSMUSG00000038170.16	novel	8264	46	NA	NA	26565	-758	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCTTATAATGGATGTG	NA	NA	NA	NA	NA	NA	NA	NA	97648760	97646927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_97646900_97648800
ONT_simulated_read_17893143	chr8	-	894	6	ISM	ENSMUSG00000039199.7	ENSMUST00000212303.2	2056	14	11362	4229	-1158	-4171	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCCCATGCGACTTCGTA	NA	NA	NA	NA	NA	NA	NA	NA	106212140	106203283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_106203371_106203648_106203751_106205383_106205560_106210172_106210416_106210820_106211060_106212093
ONT_simulated_read_17897043	chr7	+	554	5	ISM	ENSMUSG00000030659.15	ENST00000458064.6	1276	11	6977	-34	6977	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACACACGTTTTTATCTT	NA	NA	NA	NA	NA	NA	NA	NA	116128046	116139819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_116128112_116128209_116128303_116135096_116135268_116139179_116139262_116139676
ONT_simulated_read_1790219	chr2	-	765	6	ISM	ENSMUSG00000037110.21	ENSMUST00000131824.8	5624	39	106890	109847	106890	-97680	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTTCCCAAATACCTAC	NA	NA	NA	NA	NA	NA	NA	NA	146246929	146199965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_146200006_146203310_146203440_146229147_146229304_146229526_146229626_146230410_146230605_146246782
ONT_simulated_read_17902674	chr6	-	785	3	ISM	ENSMUSG00000056305.5	ENST00000450066.6	1493	11	21588	-387	21588	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	152	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTTGTGGGTGGGCACT	NA	NA	NA	NA	NA	NA	NA	NA	72298374	72295660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_72296223_72296722_72296810_72298238
ONT_simulated_read_17902905	chr3	-	671	1	ISM	ENSMUSG00000044864.17	ENSMUST00000120875.8	4945	4	1309	33606	408	-30786	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGCCCAGGACTCAGACA	NA	NA	NA	NA	NA	NA	NA	NA	38537684	38537013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_38537000_38537700
ONT_simulated_read_179032	chr10	+	518	6	ISM	ENSMUSG00000040287.10	ENST00000332782.7	1302	11	4442	186	4442	-186	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACACCCACTCCTCGTTC	NA	NA	NA	NA	NA	NA	NA	NA	127343093	127344369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_127343162_127343329_127343383_127343567_127343654_127343814_127343867_127343949_127344088_127344248
ONT_simulated_read_17904122	chr7	+	918	9	ISM	ENSMUSG00000030714.15	ENSMUST00000032956.10	1312	10	38	607	38	-367	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGGAGCCACCATGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	126248518	126271490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327
ONT_simulated_read_17904616	chr14	-	1256	10	ISM	ENSMUSG00000040701.17	ENSMUST00000170285.2	2596	22	3607	71	3607	-71	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGGGTGATGACCACAGT	NA	NA	NA	NA	NA	NA	NA	NA	55339997	55336382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338633_55338851_55338980_55339054_55339145_55339767_55339891_55339964
ONT_simulated_read_17904718	chr18	+	193	1	NIC	ENSMUSG00000036299.6	novel	979	3	NA	NA	0	-3501	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCCCTTTGGACCGGCA	NA	NA	NA	NA	NA	NA	NA	NA	75138970	75139163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_+_75139000_75139200
ONT_simulated_read_17906887	chr14	-	2242	1	NIC	ENSMUSG00000035296.15	novel	3515	8	NA	NA	36647	-421	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAAGTCCCATGTGCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	61459226	61456984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_61457000_61459200
ONT_simulated_read_17909025	chr11	+	174	1	ISM	ENSMUSG00000020484.20	ENSMUST00000063084.16	2129	5	0	5061	0	-4111	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGAGTTGAGCCCGCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	5470658	5470832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_5470700_5470800
ONT_simulated_read_17911066	chr11	-	2173	15	NIC	ENSMUSG00000009079.17	novel	2588	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTCCTCCTCTGTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	5049067	5019688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ONT_simulated_read_17912569	chr17	+	322	3	FSM	ENSMUSG00000059791.15	ENST00000376420.9	983	3	103	558	103	-558	multi-exon	TRUE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGCTGCTGACTGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	36172377	36175495	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_36172410_36174330_36174528_36175402
ONT_simulated_read_17915096	chr2	+	1187	1	FSM	ENSMUSG00000074916.6	ENSMUST00000099546.6	2090	1	18	885	0	-879	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCTACCTAAGTATATCC	NA	NA	NA	NA	NA	NA	NA	NA	118756994	118758181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_118757000_118758200
ONT_simulated_read_17915301	chrX	-	1080	9	ISM	ENSMUSG00000025268.16	ENSMUST00000112697.10	1851	11	1562	205	1562	-205	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGCTGGTGCCGGTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	149594149	149589917	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869
ONT_simulated_read_17915362	chrX	-	1009	1	ISM	ENSMUSG00000048007.5	ENSMUST00000054213.5	1421	2	3601	0	3601	0	mono-exon	FALSE	NA	NA	NA	NA	NA	203	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGACGAAGAGGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	133439013	133438004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_133438000_133439000
ONT_simulated_read_17915758	chr7	-	409	5	ISM	ENSMUSG00000025484.10	ENSMUST00000211624.2	769	7	1031	228	-85	-156	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTACTCACGGGGAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	140436244	140434512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_140434537_140434677_140434735_140434986_140435079_140435718_140435844_140436133
ONT_simulated_read_17917415	chr1	+	1981	14	FSM	ENSMUSG00000026289.16	ENST00000347464.9	2656	14	94	581	7	-574	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAACTCCCTTCCTGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	87683814	87719570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_87684037_87687772_87687867_87699113_87699180_87701866_87701954_87703478_87703582_87706643_87706750_87707846_87707918_87709392_87709465_87713597_87713719_87713962_87714069_87717052_87717203_87717293_87717342_87718307_87718410_87718937
ONT_simulated_read_17921803	chr10	-	2010	11	NNC	ENSMUSG00000036112.16	novel	1984	11	NA	NA	-153	-107	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATATTCTTACTTGGATGC	NA	NA	NA	NA	NA	NA	NA	NA	93725829	93696908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715499_93715934_93716001_93722855_93722961_93725399
ONT_simulated_read_17922584	chr17	+	667	4	FSM	ENSMUSG00000002768.9	ENST00000642748.1	1035	4	12	356	0	-83	multi-exon	FALSE	canonical	NA	NA	NA	NA	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCTCGGACGCTCAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	46991708	46993719	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_46991917_46992542_46992824_46992934_46993038_46993644
ONT_simulated_read_17925653	chr2	-	2659	20	ISM	ENSMUSG00000027379.14	ENSMUST00000028858.8	3421	25	7821	161	7821	-161	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTGATGCTTTCAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	127665964	127643202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663780_127663861_127663915_127665878
ONT_simulated_read_17928239	chr9	-	148	1	ISM	ENSMUSG00000010651.5	ENSMUST00000010795.5	1689	12	8709	214	8709	-214	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCACAGCACTTTAATTTA	NA	NA	NA	NA	NA	NA	NA	NA	118977452	118977304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_118977300_118977500
ONT_simulated_read_17929721	chr12	-	618	1	ISM	ENSMUSG00000002020.16	ENSMUST00000002073.13	6769	36	92170	533	92117	-416	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTGGCATGAGCTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	84831136	84830518	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_84830500_84831100
ONT_simulated_read_17930841	chr15	-	123	1	NIC	ENSMUSG00000014313.16	novel	503	4	NA	NA	5547	0	mono-exon	FALSE	NA	NA	NA	NA	NA	799	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGCTTGGTTATTAAT	NA	NA	NA	NA	NA	NA	NA	NA	35932244	35932121	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_35932100_35932200
ONT_simulated_read_17931018	chr4	+	512	4	ISM	ENSMUSG00000032890.18	ENSMUST00000171363.2	977	6	0	2530	0	-2530	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGGAAGTGATTGAAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	120735065	120746227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_120735283_120740271_120740414_120744130_120744241_120746184
ONT_simulated_read_17936482	chr1	-	276	1	ISM	ENSMUSG00000026239.15	ENSMUST00000027444.15	1159	5	38964	314	38964	-314	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCCAACCCCAGCCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	86471305	86471029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_86471000_86471300
ONT_simulated_read_17937028	chr5	+	259	1	ISM	ENSMUSG00000029125.15	ENSMUST00000114126.9	3002	11	0	98765	0	-97817	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTAGCTTCCCGATGC	NA	NA	NA	NA	NA	NA	NA	NA	38196085	38196344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_38196100_38196300
ONT_simulated_read_17939273	chrX	-	2330	11	ISM	ENSMUSG00000031109.17	ENSMUST00000114912.8	3167	15	218491	328	10998	231	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAATAGTCTGCTTTACA	NA	NA	NA	NA	NA	NA	NA	NA	48158628	48099662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_48100512_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511
ONT_simulated_read_17940765	chr6	-	786	9	ISM	ENSMUSG00000035245.13	ENST00000540955.5	1331	12	10200	125	10200	-125	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACACCCGAAGTTTACCAA	NA	NA	NA	NA	NA	NA	NA	NA	97112231	97089146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_97089168_97089641_97089745_97090803_97090924_97092961_97093024_97095841_97095911_97102480_97102585_97108312_97108420_97111239_97111345_97112136
ONT_simulated_read_17941982	chr2	+	2263	16	ISM	ENSMUSG00000002455.15	ENSMUST00000136481.8	3048	21	57	6083	54	-6083	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGGCCCGGGAGGCCTA	NA	NA	NA	NA	NA	NA	NA	NA	181243165	181291361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214
ONT_simulated_read_17943958	chr8	-	711	4	ISM	ENSMUSG00000031508.15	ENSMUST00000033905.13	2285	6	18	7574	18	-102	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCATACTGCCCACTCAC	NA	NA	NA	NA	NA	NA	NA	NA	11685736	11669157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_11669298_11678438_11678531_11682865_11683019_11685410
ONT_simulated_read_17945981	chr3	-	325	1	ISM	ENSMUSG00000027770.6	ENSMUST00000029336.6	5620	25	36285	2382	36151	-313	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCATCTAGCTACTATAAAG	NA	NA	NA	NA	NA	NA	NA	NA	62378140	62377815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_62377800_62378100
ONT_simulated_read_1794853	chr1	-	352	1	Genic_Genomic	ENSMUSG00000085653.8	novel	NA	NA	NA	NA	6608	159	mono-exon	FALSE	NA	NA	NA	NA	NA	628	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGACTGGCAGTGCCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	75345048	75344696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr1_-_75344700_75345000
ONT_simulated_read_17951596	chr7	-	231	1	NIC	ENSMUSG00000048170.15	novel	4237	16	NA	NA	41915	-574	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTTTTCCTGAAATCAAG	NA	NA	NA	NA	NA	NA	NA	NA	128300295	128300064	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_128300100_128300300
ONT_simulated_read_1795227	chr15	-	169	1	ISM	ENSMUSG00000049382.11	ENSMUST00000023952.10	1958	9	7372	244	4517	0	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGCCACTGAAGTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	101905545	101905376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_101905400_101905500
ONT_simulated_read_17952575	chr7	-	182	1	FSM	ENSMUSG00000108506.2	ENSMUST00000206719.2	339	1	0	157	0	-157	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGGCGATTAAGAAGAAAT	NA	NA	NA	NA	NA	NA	NA	NA	79440373	79440191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_79440200_79440400
ONT_simulated_read_17954843	chr3	-	766	5	ISM	ENSMUSG00000037174.19	ENSMUST00000108051.8	2514	7	10649	1876	10503	-1856	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTCCAGAGCAGAGAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	51174286	51164961	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_51165197_51166592_51166786_51168419_51168507_51172289_51172428_51174173
ONT_simulated_read_17960102	chr17	-	579	4	ISM	ENSMUSG00000023795.17	ENSMUST00000142526.9	1175	7	4949	61	4949	-61	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAACTTGAGGCTGAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	3129408	3126913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_3127058_3127567_3127722_3127962_3128110_3129274
ONT_simulated_read_17963167	chr3	+	427	1	NIC	ENSMUSG00000002228.8	novel	1721	10	NA	NA	0	-4536	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCCAGGAACCTGCACCC	NA	NA	NA	NA	NA	NA	NA	NA	104688371	104688798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_+_104688400_104688800
ONT_simulated_read_17963941	chr6	-	1320	1	FSM	ENSMUSG00000097656.2	ENSMUST00000180813.2	217	1	0	-1103	0	1103	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGAAAATTAAAGCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	57666634	57665314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_57665300_57666600
ONT_simulated_read_17965662	chr13	+	2308	1	ISM	ENSMUSG00000021413.10	ENSMUST00000077853.5	7844	15	27637	818	27637	-818	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTCCGGTGTTTGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	35086921	35089229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_35086900_35089200
ONT_simulated_read_17970886	chr10	+	501	1	FSM	ENSMUSG00000050490.8	ENSMUST00000079684.7	952	1	51	400	51	-400	mono-exon	FALSE	NA	NA	NA	NA	NA	443	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCTGGGACCTTTGTACA	NA	NA	NA	NA	NA	NA	NA	NA	85149402	85149903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_85149400_85149900
ONT_simulated_read_17971064	chr6	+	400	1	ISM	ENSMUSG00000085696.9	ENST00000518947.6	3689	2	2949	410	2949	-410	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCAGCCTTGCTAGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	52192979	52193379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_52193000_52193400
ONT_simulated_read_17972036	chr19	+	766	5	ISM	ENSMUSG00000024851.15	ENSMUST00000100022.4	4512	23	11307	264	11307	-264	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGCAAGACTCGCAGCATC	NA	NA	NA	NA	NA	NA	NA	NA	4161928	4163701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4162015_4162100_4162251_4162326_4162511_4162747_4162877_4163484
ONT_simulated_read_17975043	chr14	-	1033	4	ISM	ENSMUSG00000060373.16	ENST00000556142.5	1438	6	3084	13	3045	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGAAGGAAAGACAATT	NA	NA	NA	NA	NA	NA	NA	NA	52318765	52311908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52312618_52313069_52313184_52314859_52315021_52318716
ONT_simulated_read_17975323	chr14	-	764	6	ISM	ENSMUSG00000041594.19	ENST00000328767.9	2047	15	34936	12994	34936	-12994	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGCAGAGCTACCGGACA	NA	NA	NA	NA	NA	NA	NA	NA	123180770	123170305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566
ONT_simulated_read_1797575	chr5	+	499	2	ISM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	0	628	0	-628	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAGGAGCAGCTGAGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	137777165	137777744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_137777484_137777563
ONT_simulated_read_17975820	chr7	+	1229	6	ISM	ENSMUSG00000055319.9	ENSMUST00000042942.10	4505	19	92	27011	92	-27011	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGGCCAAGAGTTGTAAA	NA	NA	NA	NA	NA	NA	NA	NA	128346758	128359549	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_128346903_128351782_128352310_128354429_128354641_128355773_128355968_128357039_128357130_128359486
ONT_simulated_read_1797832	chr14	+	779	9	FSM	ENSMUSG00000021950.16	ENST00000613703.4	799	9	21	-1	0	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	1035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTCTCAACTGTACTGATG	NA	NA	NA	NA	NA	NA	NA	NA	33807981	33819946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_33808034_33813757_33813872_33814486_33814578_33815334_33815415_33815840_33815901_33816354_33816449_33816679_33816776_33818486_33818546_33819813
ONT_simulated_read_1798088	chr13	+	728	1	ISM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	282	3763	282	-3455	mono-exon	FALSE	NA	NA	NA	NA	NA	528	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCTGCTCCGCAGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	55468594	55469322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_55468600_55469300
ONT_simulated_read_17982082	chr8	-	526	1	ISM	ENSMUSG00000033931.10	ENSMUST00000045994.8	3424	11	21535	1839	21534	15	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCACTGTGAGAATACTGA	NA	NA	NA	NA	NA	NA	NA	NA	127676286	127675760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_127675800_127676300
ONT_simulated_read_17982294	chr10	-	291	2	ISM	ENSMUSG00000020235.17	ENSMUST00000118812.2	1215	11	2688	639	2688	-639	internal_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGTGTCCTCTACCTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	81204559	81203981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_81204070_81204356
ONT_simulated_read_17982388	chr16	-	726	5	ISM	ENSMUSG00000022544.15	ENSMUST00000064635.12	2170	8	6566	1126	6519	-1126	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTTTGAAGGTGATTT	NA	NA	NA	NA	NA	NA	NA	NA	5067281	5063141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_5063250_5065316_5065464_5066428_5066695_5066775_5066910_5067210
ONT_simulated_read_17983304	chr5	-	299	1	ISM	ENSMUSG00000028953.11	ENSMUST00000030795.10	2569	14	11493	331	11493	-331	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCATTTGGGTCTGTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	24770972	24770673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_24770700_24771000
ONT_simulated_read_17986666	chr1	-	5892	15	ISM	ENSMUSG00000026028.13	ENSMUST00000027186.12	6189	16	26895	103	-2	-103	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTCAAGTCACTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	58985694	58939710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_58943342_58945864_58945971_58947681_58947949_58949108_58949408_58950794_58950996_58951344_58951422_58954844_58954983_58957930_58958006_58958379_58958511_58960232_58960312_58960838_58961049_58962680_58962798_58965809_58965887_58974904_58975100_58985405
ONT_simulated_read_17987104	chr11	+	1141	9	ISM	ENSMUSG00000006127.10	ENSMUST00000006286.9	2679	12	67	2010	67	-1822	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCTACACCTCCACCCCA	NA	NA	NA	NA	NA	NA	NA	NA	75521880	75537687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_75522024_75523894_75524003_75524288_75524398_75527769_75527887_75528235_75528412_75528970_75529083_75530281_75530392_75536253_75536444_75537611
ONT_simulated_read_17987231	chr7	+	392	1	FSM	ENSMUSG00000047370.6	ENSMUST00000057611.6	492	1	0	100	0	-100	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACACCTTCCATCTCCACT	NA	NA	NA	NA	NA	NA	NA	NA	59805356	59805748	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_59805400_59805700
ONT_simulated_read_1798731	chr15	+	716	7	ISM	ENSMUSG00000015002.19	ENSMUST00000211878.2	2541	23	40887	13745	40887	-11738	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGATTGCGGAGTCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	65722969	65729362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_65723025_65724809_65724983_65725379_65725456_65726477_65726640_65727264_65727397_65728370_65728439_65729312
ONT_simulated_read_17988695	chr16	-	1052	10	ISM	ENSMUSG00000022680.15	ENSMUST00000023361.12	4228	24	55381	3340	55275	-2328	internal_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCACAGCCCTGAGCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	13665610	13654351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589
ONT_simulated_read_17991098	chr2	-	860	1	ISM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	13934	394	13934	-394	mono-exon	FALSE	NA	NA	NA	NA	NA	838	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGGCTGGAATATGTG	NA	NA	NA	NA	NA	NA	NA	NA	154902483	154901623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_154901600_154902500
ONT_simulated_read_1799199	chr12	+	1019	5	ISM	ENSMUSG00000021282.18	ENST00000400019.2	1249	10	2609	-384	2609	76	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTGAGTTTGATGGGTT	NA	NA	NA	NA	NA	NA	NA	NA	111508658	111511433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
ONT_simulated_read_17992	chr11	-	720	6	ISM	ENSMUSG00000004393.11	ENST00000431640.5	1368	11	1966	0	1966	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	387	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGTGAGTGTGGCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	6215757	6211620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6215511
ONT_simulated_read_17992933	chr7	-	259	1	FSM	ENSMUSG00000098802.3	ENSMUST00000183435.3	66	1	65	-258	65	258	mono-exon	FALSE	NA	NA	NA	NA	NA	368	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTTCCTGGTATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	24669435	24669176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_24669200_24669400
ONT_simulated_read_17993466	chr2	+	1050	7	ISM	ENSMUSG00000005089.16	ENSMUST00000111213.8	2093	10	-23	22022	-23	-22022	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCATTCTCCTTTTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	102489602	102586420	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_102489647_102566288_102566429_102568121_102568275_102570033_102570285_102574152_102574319_102578813_102578941_102586251
ONT_simulated_read_17995677	chr1	-	756	6	ISM	ENSMUSG00000026442.15	ENST00000513543.6	4106	26	46091	38408	46089	-8598	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACCGAGCTGGACCAGG	NA	NA	NA	NA	NA	NA	NA	NA	132547236	132536170	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_132536246_132537494_132537643_132538048_132538216_132538512_132538625_132539267_132539412_132547126
ONT_simulated_read_17997383	chr19	-	974	1	ISM	ENSMUSG00000025083.19	ENSMUST00000118800.8	3531	19	94795	69	94795	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATAAACACTTGGTGACC	NA	NA	NA	NA	NA	NA	NA	NA	56901835	56900861	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_56900900_56901800
ONT_simulated_read_18000060	chr7	-	231	1	ISM	ENSMUSG00000064179.14	ENSMUST00000071798.13	1027	14	11175	0	9568	0	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTGGGAGTACAACTTG	NA	NA	NA	NA	NA	NA	NA	NA	4507799	4507568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_4507600_4507800
ONT_simulated_read_18004184	chr16	+	479	1	NIC	ENSMUSG00000008976.17	novel	4987	10	NA	NA	0	-25713	mono-exon	FALSE	NA	NA	NA	NA	NA	167	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTCCCCCCCCGCGGC	NA	NA	NA	NA	NA	NA	NA	NA	84632011	84632490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_+_84632000_84632500
ONT_simulated_read_18006712	chr15	-	3896	1	ISM	ENSMUSG00000041935.11	ENSMUST00000046633.10	5076	6	9286	528	9256	-528	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCTGTGCATTATTTCA	NA	NA	NA	NA	NA	NA	NA	NA	4015940	4012044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_4012000_4015900
ONT_simulated_read_18007865	chr15	-	106	1	ISM	ENSMUSG00000022432.8	ENST00000357450.9	3804	26	66889	5159	66889	-278	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAGAAATGAGTATACTCT	NA	NA	NA	NA	NA	NA	NA	NA	84949273	84949167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_84949200_84949300
ONT_simulated_read_18012085	chr1	-	1405	2	ISM	ENSMUSG00000063681.15	ENST00000367397.1	3400	6	6670	8849	6670	4629	internal_fragment	FALSE	canonical	NA	NA	NA	NA	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGACCCAATTCTTGTCAA	NA	NA	NA	NA	NA	NA	NA	NA	139176770	139170772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_139171264_139175856
ONT_simulated_read_18012520	chr6	-	1046	1	ISM	ENSMUSG00000019577.7	ENSMUST00000019721.7	3484	11	10735	1178	10735	-1178	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATTGTCTTCAGAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	5485574	5484528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_5484500_5485600
ONT_simulated_read_18012802	chr2	+	708	7	ISM	ENSMUSG00000059540.16	ENSMUST00000103042.10	1183	10	0	1380	0	-1380	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGCGGAATGTGTTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	181322102	181328484	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_181322269_181325005_181325069_181325340_181325447_181326235_181326327_181327584_181327716_181327982_181328040_181328390
ONT_simulated_read_18013437	chr10	+	607	6	ISM	ENSMUSG00000004665.11	ENSMUST00000004784.11	2460	7	39	2590	0	-1023	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACCAGGAGACATCTCTA	NA	NA	NA	NA	NA	NA	NA	NA	79824456	79829306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_79824575_79827193_79827316_79828106_79828174_79828276_79828415_79829047_79829165_79829261
ONT_simulated_read_18015448	chr7	-	334	1	NIC	ENSMUSG00000057667.8	novel	3188	2	NA	NA	756	-2792	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCAGACGCGCCTGGACCA	NA	NA	NA	NA	NA	NA	NA	NA	19241536	19241202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_19241200_19241500
ONT_simulated_read_1801692	chr6	-	1045	3	ISM	ENSMUSG00000038784.14	ENSMUST00000202417.2	3296	11	80638	1061	80539	-1061	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAATAATTTTGCCATTGT	NA	NA	NA	NA	NA	NA	NA	NA	35030021	35022991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_35023294_35027996_35028495_35029776
ONT_simulated_read_18023922	chr6	+	1093	1	FSM	ENSMUSG00000072704.7	ENSMUST00000100864.7	2842	1	0	1749	0	-1749	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACATTGAATAAGAAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	133081871	133082964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_133081900_133083000
ONT_simulated_read_18023935	chr11	-	850	7	ISM	ENSMUSG00000020354.16	ENSMUST00000077221.6	1617	8	24150	497	24150	-497	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAGTGTCTGCCTTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	47246199	46870108	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_46870264_46871637_46871762_46973605_46973679_47016361_47016482_47023424_47023513_47085857_47085960_47246011
ONT_simulated_read_18024940	chr2	-	355	2	ISM	ENSMUSG00000027422.16	ENSMUST00000016072.12	5177	24	62813	295	62813	-295	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACCACCTCGAGCAGAC	NA	NA	NA	NA	NA	NA	NA	NA	143790370	143789609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_143789850_143790255
ONT_simulated_read_18025309	chr1	-	1656	1	ISM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	8390	3409	8390	-3409	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTATAGCCTGCTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	178156972	178155316	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_178155300_178157000
ONT_simulated_read_18026768	chr6	+	477	2	FSM	ENSMUSG00000030031.15	ENST00000460576.5	955	2	-33	511	0	-511	multi-exon	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCGGCTGTGGGACCTTG	NA	NA	NA	NA	NA	NA	NA	NA	95094860	95103839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_95094956_95103457
ONT_simulated_read_18026795	chr11	+	533	5	ISM	ENSMUSG00000038845.12	ENST00000504124.6	1735	7	4441	899	4431	-266	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	206	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACGGCAGGCGACGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	95562275	95570597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
ONT_simulated_read_1802708	chr5	-	1540	5	ISM	ENSMUSG00000029156.12	ENSMUST00000081170.9	3786	6	3322	2117	3322	-2117	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAAGCCATCATCATCAG	NA	NA	NA	NA	NA	NA	NA	NA	73801811	73792208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614
ONT_simulated_read_18028045	chr11	-	715	1	ISM	ENSMUSG00000078771.11	ENSMUST00000103236.4	1463	2	3314	0	3314	0	mono-exon	FALSE	NA	NA	NA	NA	NA	237	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGACTATGTATCTTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	79418100	79417385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_79417400_79418100
ONT_simulated_read_18028268	chr12	-	447	1	ISM	ENSMUSG00000021208.10	ENSMUST00000044687.7	1093	7	5879	0	5879	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGCTTGAGGTGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	103417603	103417156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_103417200_103417600
ONT_simulated_read_18028400	chr15	-	710	1	NIC	ENSMUSG00000022420.17	novel	1011	5	NA	NA	11856	319	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	373	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTCCTGTCCCCTTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	79646728	79646018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_79646000_79646700
ONT_simulated_read_1803187	chr17	+	356	1	NIC	ENSMUSG00000046711.17	novel	1045	6	NA	NA	0	-5581	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCTGAGCCCAGCCACGC	NA	NA	NA	NA	NA	NA	NA	NA	27775614	27775970	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_+_27775600_27776000
ONT_simulated_read_18032421	chr7	+	244	2	ISM	ENSMUSG00000030877.12	ENST00000420133.2	1087	3	2837	0	2837	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTAAATGCCAGGTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	120591045	120594758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_120591134_120594602
ONT_simulated_read_18032662	chr11	-	395	4	ISM	ENSMUSG00000020806.16	ENST00000591885.5	2482	17	3542	2712	3542	-2712	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTCTCGCCCTGCATCC	NA	NA	NA	NA	NA	NA	NA	NA	116494663	116492558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_116492582_116492714_116492790_116493014_116493127_116494478
ONT_simulated_read_18033522	chr11	+	423	4	ISM	ENSMUSG00000018339.13	ENSMUST00000082430.11	1594	5	154	1314	154	-1314	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCTAATTTCCAGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	54793751	54799889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_54793879_54797952_54798107_54799366_54799485_54799865
ONT_simulated_read_18035371	chr2	+	730	1	ISM	ENSMUSG00000002103.17	ENSMUST00000002172.14	4656	11	9090	1370	8399	-1369	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTGATGCACCTGAATTC	NA	NA	NA	NA	NA	NA	NA	NA	91042343	91043073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_91042300_91043100
ONT_simulated_read_18035812	chr17	+	604	3	ISM	ENSMUSG00000060586.12	ENSMUST00000235530.2	1669	6	3708	1596	-41	-502	internal_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGAGTTGGGGGCTTCGTG	NA	NA	NA	NA	NA	NA	NA	NA	34528548	34534052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34528835_34533143_34533426_34534016
ONT_simulated_read_18040337	chr17	+	782	5	NIC	ENSMUSG00000073471.4	novel	2225	8	NA	NA	408	-1020	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTACTCTGAGACCTC	NA	NA	NA	NA	NA	NA	NA	NA	8164892	8197636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_+_8165136_8171380_8171466_8192768_8192973_8194876_8195040_8197549
ONT_simulated_read_18043803	chr14	+	737	4	ISM	ENSMUSG00000040618.8	ENSMUST00000226352.2	2784	11	24	5760	7	-4738	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTACCTATCTAGGACAC	NA	NA	NA	NA	NA	NA	NA	NA	55777869	55781521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316
ONT_simulated_read_18045045	chr3	+	196	2	ISM	ENSMUSG00000038403.11	ENST00000497365.5	1322	3	-9	2127	0	-2127	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTCTCGTCCACTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	96432487	96434387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_96432647_96434350
ONT_simulated_read_18046105	chr10	-	467	1	NIC	ENSMUSG00000035189.18	novel	3888	27	NA	NA	307359	55	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAAGTTCAGATCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	88785639	88785172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_88785200_88785600
ONT_simulated_read_18048116	chr7	-	269	1	ISM	ENSMUSG00000030680.7	ENSMUST00000200948.2	1430	3	490	1561	455	-1188	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCCAGCGGCTCTATGAA	NA	NA	NA	NA	NA	NA	NA	NA	126616034	126615765	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126615800_126616000
ONT_simulated_read_18048343	chr9	-	1612	1	ISM	ENSMUSG00000049624.15	ENSMUST00000052441.12	3236	11	49742	200	49716	-182	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGCCTGCCTTATGTTT	NA	NA	NA	NA	NA	NA	NA	NA	78445581	78443969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_78444000_78445600
ONT_simulated_read_18048352	chrX	-	425	1	NIC	ENSMUSG00000031255.15	novel	3306	14	NA	NA	24184	-1224	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGGTTTAATTAAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	132838800	132838375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_132838400_132838800
ONT_simulated_read_18049323	chr8	-	749	1	ISM	ENSMUSG00000098086.2	ENSMUST00000182952.2	985	2	266	168	266	-168	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGACGATGATCACATCCT	NA	NA	NA	NA	NA	NA	NA	NA	88227593	88226844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_88226800_88227600
ONT_simulated_read_18050313	chr15	+	383	5	NNC	ENSMUSG00000022338.9	novel	558	5	NA	NA	-3	-157	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGATTTATTTCTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	44291503	44299106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_44291567_44292955_44293033_44295833_44295905_44297296_44297370_44299007
ONT_simulated_read_18051126	chr7	+	537	4	ISM	ENSMUSG00000030523.19	ENSMUST00000205731.2	2575	11	13707	14213	102	-14213	internal_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTATGGTGCTGAGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	63849009	63854270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_63849107_63851634_63851849_63852753_63852879_63854169
ONT_simulated_read_18051280	chr3	-	487	3	ISM	ENSMUSG00000001017.16	ENST00000368687.1	1095	4	3186	250	3186	-250	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGCCTACATGGCACAGA	NA	NA	NA	NA	NA	NA	NA	NA	90410588	90407251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_90407415_90409422_90409561_90410402
ONT_simulated_read_18052691	chr2	-	816	4	ISM	ENSMUSG00000035949.16	ENSMUST00000091020.10	1838	8	164	5685	0	-4771	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGAATACACTCACTGGG	NA	NA	NA	NA	NA	NA	NA	NA	34716083	34701035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_34701129_34702826_34703022_34712569_34712988_34715973
ONT_simulated_read_18056868	chr6	+	518	1	FSM	ENSMUSG00000055093.11	ENSMUST00000119780.2	471	1	0	-47	0	47	mono-exon	FALSE	NA	NA	NA	NA	NA	651	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTGCTTCACAATGCAG	NA	NA	NA	NA	NA	NA	NA	NA	122433862	122434380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_122433900_122434400
ONT_simulated_read_18058052	chr5	-	2143	15	ISM	ENSMUSG00000037364.13	ENSMUST00000040873.12	3024	20	7286	0	6799	0	3prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTATGTCCCTTCCCAA	NA	NA	NA	NA	NA	NA	NA	NA	137298650	137293965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505
ONT_simulated_read_18059128	chr10	-	628	2	ISM	ENSMUSG00000019763.12	ENSMUST00000042251.11	3139	13	28412	1062	28412	-1062	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTGTAGACCAGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	4353976	4352976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_4353502_4353873
ONT_simulated_read_18059502	chr19	-	909	8	ISM	ENSMUSG00000036748.17	ENSMUST00000235977.2	1050	9	5944	64	5914	-58	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTAGTGTTCTATTCTT	NA	NA	NA	NA	NA	NA	NA	NA	46321133	46319042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320080_46320195_46320258_46320351_46320496_46321056
ONT_simulated_read_18063045	chr12	+	1154	4	NNC	ENSMUSG00000037361.9	novel	1180	4	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTTTCTCTTGTAA	NA	NA	NA	NA	NA	NA	NA	NA	4867560	4877659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr12_+_4867820_4870593_4870713_4876757_4876897_4877022
ONT_simulated_read_18064231	chr17	-	800	7	ISM	ENSMUSG00000003200.11	ENSMUST00000233803.2	1375	9	8	1348	8	-38	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCCTGGAGGAGCTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	56343568	56325611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56325679_56325803_56325963_56326039_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
ONT_simulated_read_18064332	chr6	-	467	1	ISM	ENSMUSG00000079560.14	ENSMUST00000114434.9	2591	5	42392	1195	30250	-1192	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCCCTGACTACGACCCG	NA	NA	NA	NA	NA	NA	NA	NA	52147703	52147236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_52147200_52147700
ONT_simulated_read_18064522	chr5	+	655	6	ISM	ENSMUSG00000029141.17	ENST00000618046.4	2167	14	4680	13573	4680	3599	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAAACTTGCATTGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	31689316	31697765	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729
ONT_simulated_read_18066247	chr14	-	535	4	ISM	ENSMUSG00000021273.12	ENSMUST00000238526.2	3048	7	8190	1791	8190	-1788	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATCATCAAGCAAAACCAAG	NA	NA	NA	NA	NA	NA	NA	NA	63394184	63384389	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007
ONT_simulated_read_1806751	chr12	-	1917	1	ISM	ENSMUSG00000118667.1	ENSMUST00000239525.1	11349	7	17073	8660	17073	-8660	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGCCTGGCAAGCCCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	112749204	112747287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_112747300_112749200
ONT_simulated_read_18068488	chr17	-	347	1	ISM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	16024	1849	16024	-1849	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTGGGGTAAACTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	25163639	25163292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_25163300_25163600
ONT_simulated_read_18069358	chr14	-	605	7	NIC	ENSMUSG00000033885.16	novel	2812	18	NA	NA	46339	-103	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCGTGGGGCCTTGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	14325179	14305714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_14305839_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061
ONT_simulated_read_18070090	chr16	-	483	1	ISM	ENSMUSG00000022540.17	ENSMUST00000202281.4	1355	11	4280	25	4280	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATAAAAATCAGGTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	4827101	4826618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4826600_4827100
ONT_simulated_read_18070455	chr2	-	4702	17	ISM	ENSMUSG00000027288.17	ENST00000565611.5	3961	18	7650	-1063	7650	1063	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATTGCTTAGGAAAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	120362672	120339017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075
ONT_simulated_read_18070998	chr18	+	465	3	FSM	ENSMUSG00000002477.6	ENST00000582475.1	465	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTATCTACTATATTCACA	NA	NA	NA	NA	NA	NA	NA	NA	10617868	10628008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_10617927_10626825_10627018_10627793
ONT_simulated_read_18072037	chr11	-	1665	1	ISM	ENSMUSG00000005917.16	ENSMUST00000006071.14	2789	5	4573	614	4573	-614	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTCTTCCTCAAACGATG	NA	NA	NA	NA	NA	NA	NA	NA	21947042	21945377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_21945400_21947000
ONT_simulated_read_18073985	chrX	-	1071	1	ISM	ENSMUSG00000025656.18	ENSMUST00000113876.9	5342	10	115189	1167	114847	75	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTGACCTAGATTAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	94094778	94093707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_94093700_94094800
ONT_simulated_read_18078017	chr6	-	3012	1	ISM	ENSMUSG00000019124.11	ENSMUST00000019268.11	4810	8	57128	460	57128	-460	mono-exon	FALSE	NA	NA	NA	NA	NA	688	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTCTTGTATCACAACTA	NA	NA	NA	NA	NA	NA	NA	NA	54486346	54483334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_54483300_54486300
ONT_simulated_read_18078428	chr11	+	558	5	ISM	ENSMUSG00000020333.18	ENST00000651427.1	2589	21	48	36396	0	-12621	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGACTGTAAAGTGGGCAC	NA	NA	NA	NA	NA	NA	NA	NA	54205813	54215933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_54206034_54210977_54211094_54214066_54214182_54214815_54214881_54215891
ONT_simulated_read_18079203	chr4	-	974	1	ISM	ENSMUSG00000036078.17	ENSMUST00000059354.15	1640	4	1794	99	1794	-99	mono-exon	FALSE	NA	NA	NA	NA	NA	689	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGTGTGTGTGTGCACA	NA	NA	NA	NA	NA	NA	NA	NA	41739565	41738591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_41738600_41739600
ONT_simulated_read_18081934	chr2	-	1449	8	ISM	ENSMUSG00000074796.11	ENST00000647296.1	2682	16	5357	46	5357	-46	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCTTGATTGTATAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	130528854	130526100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803
ONT_simulated_read_18082100	chr12	-	2121	4	ISM	ENSMUSG00000054302.16	ENSMUST00000163433.8	2658	7	9928	70	9865	-70	3prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTCTAGCAACCACAGGA	NA	NA	NA	NA	NA	NA	NA	NA	54732741	54718509	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_54718648_54718863_54720636_54725294_54725409_54732644
ONT_simulated_read_18085183	chr6	+	634	5	ISM	ENSMUSG00000056666.14	ENSMUST00000176364.8	1647	10	7344	82	7344	-82	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGCCATCCTGAAACGGA	NA	NA	NA	NA	NA	NA	NA	NA	72582954	72584282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
ONT_simulated_read_18086808	chr18	-	882	5	ISM	ENSMUSG00000036501.8	ENSMUST00000040506.8	3344	21	8668	44628	8668	-44628	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAACATTTCAGTTGAGTC	NA	NA	NA	NA	NA	NA	NA	NA	34631208	34620031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_34620193_34627209_34627352_34627651_34627830_34630386_34630600_34631020
ONT_simulated_read_18087961	chr3	+	1363	1	ISM	ENSMUSG00000027806.10	ENSMUST00000099090.7	9799	4	1163	49543	1158	-44480	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATGTACCCGCGCCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	58323298	58324661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_58323300_58324700
ONT_simulated_read_18088056	chr5	+	494	5	ISM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	1534	1455	1534	-1455	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAGCCAAAAGTTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	122512047	122519510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_122512083_122516529_122516698_122518043_122518169_122519252_122519369_122519460
ONT_simulated_read_18092665	chr4	+	1589	8	ISM	ENSMUSG00000028820.14	ENSMUST00000030623.8	3465	10	2203	530	2203	-530	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCCTGTTGTTTTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	126917319	126924499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126921312_126923619
ONT_simulated_read_1809288	chr15	+	864	7	ISM	ENSMUSG00000022556.12	ENSMUST00000072838.6	2018	12	16	2923	16	-2919	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCACCAAGCTCCATGGG	NA	NA	NA	NA	NA	NA	NA	NA	76361660	76382249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151
ONT_simulated_read_1809305	chr8	-	1869	17	ISM	ENSMUSG00000037300.20	ENST00000366661.9	2911	23	26255	366	26235	-366	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTCTAAAGAAACTCTAGC	NA	NA	NA	NA	NA	NA	NA	NA	125422468	125398840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374
ONT_simulated_read_18096482	chr17	-	1614	11	ISM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	10526	1826	10526	-1826	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCCAAGAAGTCATGTTT	NA	NA	NA	NA	NA	NA	NA	NA	24459857	24442997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752
ONT_simulated_read_18096726	chr4	+	854	1	FSM	ENSMUSG00000064949.3	ENSMUST00000083015.3	130	1	-299	-425	-299	425	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGGTGGAACTAACATAG	NA	NA	NA	NA	NA	NA	NA	NA	132037251	132038105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_132037300_132038100
ONT_simulated_read_18097106	chr15	-	283	1	ISM	ENSMUSG00000022421.21	ENSMUST00000023057.10	5006	5	14856	3277	14799	-3276	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCAGCCTGTCTACACGC	NA	NA	NA	NA	NA	NA	NA	NA	79674111	79673828	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79673800_79674100
ONT_simulated_read_18100822	chr2	-	345	1	ISM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	79544	2270	53831	-711	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCATAGATTTCCTGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	62163031	62162686	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_62162700_62163000
ONT_simulated_read_18101	chr9	+	1071	9	FSM	ENSMUSG00000032086.13	ENST00000513780.5	1457	9	212	174	212	-174	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACTTATGACCATAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	45750537	45771445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_45750587_45764185_45764275_45765924_45766142_45767460_45767524_45768411_45768547_45769697_45769800_45770207_45770358_45770576_45770749_45771351
ONT_simulated_read_18102122	chr14	+	353	5	ISM	ENSMUSG00000039197.11	ENSMUST00000045376.11	1782	11	37	213682	37	-213086	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGTTTGGGGAGATCCTG	NA	NA	NA	NA	NA	NA	NA	NA	21102678	21284955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_21102769_21142434_21142510_21153887_21153942_21219867_21219947_21284900
ONT_simulated_read_18103243	chr17	-	548	1	ISM	ENSMUSG00000052031.9	ENSMUST00000063683.8	2312	4	4147	1451	4147	-1451	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTTTCACAACAAAGACAGA	NA	NA	NA	NA	NA	NA	NA	NA	7224408	7223860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_7223900_7224400
ONT_simulated_read_18103952	chr19	-	2114	13	ISM	ENSMUSG00000024862.17	ENST00000421552.5	2667	15	4503	144	335	-144	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATCCTGCCACGCCATC	NA	NA	NA	NA	NA	NA	NA	NA	5163878	5157919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160293_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808
ONT_simulated_read_18104891	chr4	+	667	5	ISM	ENSMUSG00000029056.14	ENSMUST00000030931.11	2508	19	5876	8664	5866	-8664	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAGGAGCCGAGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	155054455	155056664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155054635_155054903_155054997_155055330_155055485_155055829_155056012_155056605
ONT_simulated_read_18111504	chr15	-	195	1	ISM	ENSMUSG00000063480.9	ENSMUST00000080622.9	2077	3	5372	1507	5372	-1507	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACCAGTTACTATTATAT	NA	NA	NA	NA	NA	NA	NA	NA	81926427	81926232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81926200_81926400
ONT_simulated_read_18114023	chr1	+	887	5	ISM	ENSMUSG00000026029.15	ENSMUST00000027189.15	2585	9	103	18361	0	-15702	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGGTAATTCGCACAG	NA	NA	NA	NA	NA	NA	NA	NA	58834635	58868301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_58834898_58863073_58863407_58866365_58866472_58868031_58868171_58868254
ONT_simulated_read_18115014	chr7	+	364	4	ISM	ENSMUSG00000046223.11	ENSMUST00000002284.11	1506	7	16	4028	16	-4028	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCGTCCTGCACCTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	24161924	24171364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_24161993_24164555_24164667_24166099_24166244_24171323
ONT_simulated_read_18115513	chr14	-	1516	2	ISM	ENSMUSG00000062014.14	ENSMUST00000111817.8	4171	7	7924	2234	7924	-2234	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGTAACCAAGGCTAAACA	NA	NA	NA	NA	NA	NA	NA	NA	47051775	47047839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_47049281_47051700
ONT_simulated_read_18117810	chr13	+	1130	5	ISM	ENSMUSG00000021476.10	ENST00000375251.7	1257	6	-43	502	0	-502	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	550	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCCGTGTCGTGTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	64309682	64333229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_64310149_64317827_64317991_64329920_64330093_64332386_64332573_64333086
ONT_simulated_read_18119194	chr15	-	1714	6	ISM	ENSMUSG00000022329.16	ENSMUST00000067033.8	2471	9	83183	223	83183	-223	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACTGAGGGAAAAAAATGT	NA	NA	NA	NA	NA	NA	NA	NA	35072713	34876041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575
ONT_simulated_read_18120787	chr19	-	389	1	ISM	ENSMUSG00000043531.17	ENSMUST00000211687.2	7080	26	527146	3291	101339	22	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCCAAAATAACAAGTAAACA	NA	NA	NA	NA	NA	NA	NA	NA	50139777	50139388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_50139400_50139800
ONT_simulated_read_18121864	chr14	-	527	3	ISM	ENSMUSG00000022221.15	ENSMUST00000178399.3	1865	10	1944	1060	1112	746	internal_fragment	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCCCGGTCCTCACCCCC	NA	NA	NA	NA	NA	NA	NA	NA	56024370	56023513	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_56023816_56024039_56024108_56024213
ONT_simulated_read_18122243	chr15	-	1246	9	ISM	ENSMUSG00000022433.22	ENSMUST00000120859.9	1392	11	11837	-17	11652	17	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACAAATAAGAGAAAGGACA	NA	NA	NA	NA	NA	NA	NA	NA	79314366	79303348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254
ONT_simulated_read_18122729	chrX	+	372	1	FSM	ENSMUSG00000106264.3	ENSMUST00000196502.3	54	1	0	-318	0	318	mono-exon	FALSE	NA	NA	NA	NA	NA	374	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGTGTTGAGGGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	134647464	134647836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_134647500_134647800
ONT_simulated_read_18122957	chr9	-	2344	1	ISM	ENSMUSG00000039952.16	ENSMUST00000191899.6	5662	4	54321	2660	54099	-1336	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACCGATCACCCCCTCCG	NA	NA	NA	NA	NA	NA	NA	NA	108086836	108084492	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_108084500_108086800
ONT_simulated_read_18123702	chr4	-	2550	1	ISM	ENSMUSG00000036822.7	ENSMUST00000042575.7	3856	3	6790	910	6790	-910	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCAGTCTTCCACAGCC	NA	NA	NA	NA	NA	NA	NA	NA	40263060	40260510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_40260500_40263100
ONT_simulated_read_18123818	chr9	-	202	1	Genic_Genomic	ENSMUSG00000110834.2	novel	NA	NA	NA	NA	11586	6	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTATGAGTACTGGAATG	NA	NA	NA	NA	NA	NA	NA	NA	124033183	124032981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr9_-_124033000_124033200
ONT_simulated_read_18124453	chr18	-	2172	6	ISM	ENSMUSG00000024270.12	ENSMUST00000070726.10	3882	10	7333	0	7333	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTTGTTCTCTTTCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	24729541	24712937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_24714135_24715373_24715565_24717076_24717158_24718182_24718561_24722803_24722910_24729322
ONT_simulated_read_18126292	chr17	+	948	6	ISM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	38065	3287	38065	-3287	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTTCTTGTGGTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	29917633	29921666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
ONT_simulated_read_1812692	chr10	-	1726	5	ISM	ENSMUSG00000056758.15	ENSMUST00000159699.2	3810	6	3135	1563	3135	-1563	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTACTCTTACTCCGTCT	NA	NA	NA	NA	NA	NA	NA	NA	120309239	120198742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_120200202_120206530_120206631_120210572_120210606_120298568_120298620_120309156
ONT_simulated_read_181281	chr3	-	203	1	ISM	ENSMUSG00000028195.5	ENST00000451137.7	2001	6	2013	822	2013	-790	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCCAGTCCTGCAAATGTA	NA	NA	NA	NA	NA	NA	NA	NA	145353723	145353520	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_145353500_145353700
ONT_simulated_read_18130277	chr4	+	594	6	ISM	ENSMUSG00000066037.15	ENSMUST00000105850.8	2683	11	57	13424	0	-12889	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGACTTGTATGAGGATGAA	NA	NA	NA	NA	NA	NA	NA	NA	136038335	136054568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_136038401_136041400_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546
ONT_simulated_read_18131081	chr1	-	3062	7	ISM	ENSMUSG00000006014.17	ENSMUST00000006171.16	1869	11	9270	584	9270	-127	intron_retention	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTCCTTGAACTGATTG	NA	NA	NA	NA	NA	NA	NA	NA	150332079	150325746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_150325833_150326513_150326640_150326999_150327201_150327604_150327762_150327973_150328111_150329213_150329292_150329802
ONT_simulated_read_18132270	chr9	-	1212	6	ISM	ENSMUSG00000059890.17	ENST00000252108.8	5847	20	11927	16889	11927	6037	internal_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCTCCCCAACTTGCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	44859511	44851315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323
ONT_simulated_read_18133034	chr8	-	3715	4	ISM	ENSMUSG00000037316.10	ENSMUST00000038498.10	4876	5	7768	764	7768	-764	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAGCAAGCTAAAAGTAG	NA	NA	NA	NA	NA	NA	NA	NA	26267547	26255329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26258438_26259309_26259565_26261106_26261362_26267450
ONT_simulated_read_181336	chr12	+	1165	8	ISM	ENSMUSG00000041781.10	ENSMUST00000047357.10	5732	15	0	16500	0	-16500	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCCTGACCTGGAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	101942246	101956183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_101942394_101948172_101948355_101949434_101949595_101949678_101949785_101951479_101951610_101953516_101953633_101954891_101955080_101956047
ONT_simulated_read_18136404	chr7	-	3307	1	ISM	ENSMUSG00000074170.6	ENSMUST00000098513.6	5263	2	5888	1850	5888	-1850	mono-exon	FALSE	NA	NA	NA	NA	NA	262	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCCCACCTCTGACTCTT	NA	NA	NA	NA	NA	NA	NA	NA	37921552	37918245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_37918200_37921600
ONT_simulated_read_18136692	chr1	-	618	1	NIC	ENSMUSG00000042305.13	novel	3149	8	NA	NA	13675	435	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCCCTTTACCCTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	134275933	134275315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_134275300_134275900
ONT_simulated_read_18138635	chr9	-	895	1	NIC	ENSMUSG00000000171.6	novel	1231	4	NA	NA	6561	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1599	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTATATAATGAAAATACAT	NA	NA	NA	NA	NA	NA	NA	NA	50508551	50507656	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_50507700_50508600
ONT_simulated_read_18140280	chr18	-	483	1	ISM	ENSMUSG00000073542.4	ENSMUST00000097542.4	3576	12	21966	1088	21844	144	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTATTTTACACAAATTAG	NA	NA	NA	NA	NA	NA	NA	NA	67752440	67751957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_67752000_67752400
ONT_simulated_read_18140566	chr14	+	1871	22	ISM	ENSMUSG00000022211.10	ENSMUST00000076236.7	4602	40	1773	9384	1773	-9375	internal_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATCTCTCAAGCTTACCG	NA	NA	NA	NA	NA	NA	NA	NA	55730322	55736341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_55730424_55730676_55730728_55730834_55730895_55730980_55731097_55731284_55731383_55731635_55731707_55731804_55731879_55732109_55732186_55732261_55732351_55732860_55732956_55733180_55733268_55733437_55733548_55733681_55733760_55734243_55734321_55734397_55734503_55734594_55734665_55735120_55735203_55735302_55735400_55735544_55735600_55735675_55735849_55736058_55736128_55736304
ONT_simulated_read_1814317	chr9	+	523	1	ISM	ENSMUSG00000095891.8	ENSMUST00000075573.7	684	3	0	448	0	-448	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACATTTCTAAATTTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	3025416	3025939	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_3025400_3025900
ONT_simulated_read_18143394	chr12	+	982	7	ISM	ENSMUSG00000021175.16	ENSMUST00000021592.16	2957	10	373	3975	373	-2311	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAAAGACATCACTGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	117807622	117838466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_117807693_117828764_117828900_117833740_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418
ONT_simulated_read_18147001	chr3	-	409	5	ISM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	8715	13275	8598	3298	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGTACCTCAGTGAATG	NA	NA	NA	NA	NA	NA	NA	NA	138186561	138177991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448
ONT_simulated_read_18149816	chr2	+	313	3	ISM	ENSMUSG00000067818.7	ENSMUST00000088552.7	1128	4	37	1124	37	-627	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATCAACTTCACCATGTT	NA	NA	NA	NA	NA	NA	NA	NA	156617376	156622454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_156617427_156620438_156620649_156622401
ONT_simulated_read_18151612	chr7	-	635	5	ISM	ENSMUSG00000000605.10	ENSMUST00000210061.2	2445	13	1962	9964	37	-9917	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGGCAAAGAGGGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	7299843	7297017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7299722
ONT_simulated_read_1815375	chr13	+	686	6	ISM	ENSMUSG00000038732.16	ENSMUST00000047311.16	2905	13	0	24308	0	-24308	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACCGACTTGCTGTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	30320471	30406392	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_30320746_30378518_30378665_30379692_30379771_30386307_30386404_30403618_30403675_30406356
ONT_simulated_read_1815466	chr14	-	455	2	FSM	ENSMUSG00000022090.11	ENST00000443561.3	455	2	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCAGGTTGCTAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	70405227	70401905	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_70402243_70405109
ONT_simulated_read_18160017	chr9	-	1238	10	ISM	ENSMUSG00000048537.17	ENSMUST00000144251.8	3589	17	9348	1326	-2159	-1322	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGCAGAGGCCATGCGCA	NA	NA	NA	NA	NA	NA	NA	NA	44615189	44598930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44598996_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609048_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099
ONT_simulated_read_18162343	chr1	-	2232	7	ISM	ENSMUSG00000033557.18	ENSMUST00000086153.8	4414	8	12962	1918	12948	-1918	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATAGGTATGAACCAACA	NA	NA	NA	NA	NA	NA	NA	NA	156533694	156508058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_156509213_156513760_156513821_156514925_156515118_156518046_156518219_156526296_156526407_156529968_156530056_156533237
ONT_simulated_read_18163872	chr14	-	2439	11	ISM	ENSMUSG00000053754.15	ENSMUST00000089752.11	8190	37	29506	695	29506	-367	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCCACCCCCACCATCAC	NA	NA	NA	NA	NA	NA	NA	NA	52445523	52436302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52436610_52439087_52439205_52439600_52439781_52439960_52440075_52441333_52441637_52441889_52442042_52442246_52442964_52443052_52443262_52444307_52444516_52444691_52444747_52445446
ONT_simulated_read_18165421	chr2	-	139	1	NIC	ENSMUSG00000026971.16	novel	4806	15	NA	NA	68386	0	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGGACTCAGGAGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	60435621	60435482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_60435500_60435600
ONT_simulated_read_18165490	chr3	-	341	1	ISM	ENSMUSG00000027800.15	ENSMUST00000171384.8	2855	5	7151	1787	7151	86	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAACAAGAAAGATAT	NA	NA	NA	NA	NA	NA	NA	NA	57195159	57194818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_57194800_57195200
ONT_simulated_read_18169687	chr18	-	625	5	ISM	ENSMUSG00000024527.11	ENSMUST00000025408.10	3094	17	65	35448	65	-35448	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTCAATAACTATCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	67582177	67573281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_67573405_67573511_67573616_67575379_67575458_67575820_67575921_67581957
ONT_simulated_read_18170760	chr11	-	414	5	ISM	ENSMUSG00000025137.16	ENSMUST00000026129.16	1881	14	4862	1258	4851	-928	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTCGCTCAAAGTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	120503900	120502170	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120503855
ONT_simulated_read_18171116	chr19	+	1928	6	ISM	ENSMUSG00000004054.10	ENSMUST00000004156.10	3898	12	97	7005	97	-7005	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGCGAGATCCAGGGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	5739161	5745888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_5739295_5739504_5739541_5739716_5741017_5745188_5745370_5745524_5745674_5745759
ONT_simulated_read_1817261	chr5	+	371	4	ISM	ENSMUSG00000037736.21	ENST00000509638.5	1041	7	109	15045	0	-15045	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGCTGTAACCCCTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	66903187	67116963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_66903349_67039241_67039312_67111011_67111119_67116930
ONT_simulated_read_18172715	chr1	-	1531	7	ISM	ENSMUSG00000042807.16	ENST00000644030.1	6836	28	201419	1315	201419	-1315	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	119	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCGGGAAAATGTACACA	NA	NA	NA	NA	NA	NA	NA	NA	53878270	53851652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_53852493_53866034_53866148_53867043_53867130_53869800_53869916_53870668_53870816_53871780_53871911_53878170
ONT_simulated_read_18173713	chr15	-	291	2	ISM	ENSMUSG00000033697.17	ENSMUST00000176219.9	542	3	52454	137	52344	-133	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGTTCAAATCCCAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	76649852	76642377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76642501_76649684
ONT_simulated_read_18174677	chr16	+	337	1	NIC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	15849	-1253	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGAAAAATGGGCCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	84606294	84606631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_+_84606300_84606600
ONT_simulated_read_1817650	chr17	+	2511	1	ISM	ENSMUSG00000024143.16	ENSMUST00000024956.15	4151	5	34477	0	2964	0	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTACCTCAGGAGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	87304986	87307497	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_87305000_87307500
ONT_simulated_read_1817734	chr18	+	712	6	ISM	ENSMUSG00000034484.9	ENSMUST00000037850.7	2067	15	0	20962	0	-20962	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAGTCAGAATAATTGCT	NA	NA	NA	NA	NA	NA	NA	NA	53309387	53332975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53331257_53331302_53332828
ONT_simulated_read_18181359	chr4	+	1799	8	ISM	ENSMUSG00000040410.15	ENSMUST00000039234.10	2546	9	73	6778	73	-6778	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGCAGCACTGGGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	22357615	22427313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390676_22390922_22403531_22403746_22422716_22422789_22427149
ONT_simulated_read_18182099	chr3	-	501	6	ISM	ENSMUSG00000027782.11	ENSMUST00000194558.6	3726	17	32404	13564	6744	-11691	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTGGAACTGATGAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	69002021	68993117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_68993149_68994789_68994922_68997108_68997154_68997240_68997411_69000142_69000230_69001985
ONT_simulated_read_18187549	chr2	-	1377	8	ISM	ENSMUSG00000026791.15	ENSMUST00000028129.13	2108	10	569	389	504	206	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGAGGAGCTGTGCATCC	NA	NA	NA	NA	NA	NA	NA	NA	32871525	32863390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_32863745_32864849_32864996_32865325_32865497_32865931_32866041_32866148_32866293_32866872_32867073_32870013_32870114_32871372
ONT_simulated_read_18188505	chr9	-	669	7	ISM	ENSMUSG00000001366.15	ENSMUST00000085311.13	2155	13	8811	4817	8759	-4814	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCCATCGTTCCCCG	NA	NA	NA	NA	NA	NA	NA	NA	78007127	77993597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069
ONT_simulated_read_18192866	chr17	+	794	1	ISM	ENSMUSG00000039218.18	ENSMUST00000190686.7	8864	15	16121	4635	16087	-4635	mono-exon	FALSE	NA	NA	NA	NA	NA	347	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCCGTTCTAGGTCTCG	NA	NA	NA	NA	NA	NA	NA	NA	24038281	24039075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_24038300_24039100
ONT_simulated_read_18193825	chr11	+	2273	5	ISM	ENSMUSG00000038976.13	ENSMUST00000038696.12	4508	10	0	5651	0	-5651	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTGAAGTGGCCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	94881860	94892074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_94883745_94887360_94887494_94888819_94888941_94891032_94891138_94892044
ONT_simulated_read_18194168	chr1	-	582	1	ISM	ENSMUSG00000033722.10	ENSMUST00000186156.7	4873	10	30774	618	19070	-616	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGTGGCTTTCCTGGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	155089416	155088834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_155088800_155089400
ONT_simulated_read_18195767	chr5	-	424	4	ISM	ENSMUSG00000029014.15	ENST00000249270.11	1826	15	18420	3197	18420	-3169	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAAGGCTTTTGATAA	NA	NA	NA	NA	NA	NA	NA	NA	21971668	21965448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_21965472_21965623_21965725_21966538_21966724_21971553
ONT_simulated_read_18196127	chr12	+	1920	1	ISM	ENSMUSG00000035614.12	ENST00000361462.7	6435	20	200	54711	0	-54711	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAGGGACAGCATGCAAC	NA	NA	NA	NA	NA	NA	NA	NA	65012713	65014633	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_65012700_65014600
ONT_simulated_read_18197394	chr11	-	646	5	ISM	ENSMUSG00000020321.17	ENSMUST00000239073.2	1958	9	8973	709	8860	-58	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	225	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCAAAATGTCGTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	21512961	21507400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864
ONT_simulated_read_1819956	chr8	-	352	1	FSM	ENSMUSG00000110545.2	ENSMUST00000212486.2	454	1	0	102	0	-102	mono-exon	FALSE	NA	NA	NA	NA	NA	892	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGCAGTGATTAAGTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	70463652	70463300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_70463300_70463700
ONT_simulated_read_18203328	chr17	-	1319	3	ISM	ENSMUSG00000052397.9	ENST00000337147.11	2391	11	14890	-85	14890	85	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCATTTCCTGTCAGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	7008455	7005893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_7006867_7007028_7007281_7008361
ONT_simulated_read_18204885	chr4	-	950	7	ISM	ENSMUSG00000028960.21	ENST00000253251.12	4741	27	27984	41918	27227	-41918	internal_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCATCTCCCACACCGCAC	NA	NA	NA	NA	NA	NA	NA	NA	149483215	149455666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_149455717_149457284_149457427_149465639_149465869_149468194_149468340_149469581_149469670_149471537_149471674_149483055
ONT_simulated_read_18206090	chr6	+	2248	1	ISM	ENSMUSG00000000439.10	ENSMUST00000000449.9	6230	8	17062	1413	17062	-1413	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTAGCTACTGACCTAG	NA	NA	NA	NA	NA	NA	NA	NA	115595924	115598172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_115595900_115598200
ONT_simulated_read_18206835	chr7	-	573	1	ISM	ENSMUSG00000062116.11	ENSMUST00000056246.8	2042	5	5335	891	5335	-891	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAGGGCCTTCTGAATCA	NA	NA	NA	NA	NA	NA	NA	NA	7119152	7118579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_7118600_7119200
ONT_simulated_read_18207052	chr7	-	1525	1	FSM	ENSMUSG00000108350.2	ENSMUST00000206403.2	2296	1	0	771	0	-771	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCCCTGTACTGAGGCAT	NA	NA	NA	NA	NA	NA	NA	NA	79574615	79573090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_79573100_79574600
ONT_simulated_read_18207685	chr1	+	885	7	ISM	ENSMUSG00000064302.14	ENSMUST00000191823.6	3916	33	65938	28109	65938	-28084	internal_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTTTGACGATGACATG	NA	NA	NA	NA	NA	NA	NA	NA	118475706	118506758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_118475759_118478816_118478896_118479742_118479887_118487715_118487860_118488740_118488848_118498578_118498730_118506550
ONT_simulated_read_18214698	chr6	+	2271	1	ISM	ENSMUSG00000000439.10	ENSMUST00000000449.9	6230	8	18363	89	18363	-89	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAATGGATAATCAAAA	NA	NA	NA	NA	NA	NA	NA	NA	115597225	115599496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_115597200_115599500
ONT_simulated_read_18221539	chr4	-	3027	10	ISM	ENSMUSG00000028300.15	ENSMUST00000108127.4	3193	11	6963	74	6917	-74	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGCATGTGTAAACACTG	NA	NA	NA	NA	NA	NA	NA	NA	35218917	35191360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_35193069_35193184_35193295_35194136_35194195_35196972_35197209_35205767_35205885_35211291_35211365_35213008_35213074_35213548_35213645_35217212_35217273_35218413
ONT_simulated_read_18221924	chr5	-	365	1	FSM	ENSMUSG00000080002.3	ENSMUST00000116118.3	459	1	0	94	0	-94	mono-exon	FALSE	NA	NA	NA	NA	NA	209	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGGAGAGTGCTGAGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	149584688	149584323	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_149584300_149584700
ONT_simulated_read_1822469	chr5	-	563	4	ISM	ENSMUSG00000029276.14	ENSMUST00000100949.10	1759	17	22235	21238	22235	-21184	internal_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGAGTCTGTGGCTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	107723208	107718072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_107718184_107720145_107720249_107721550_107721789_107723097
ONT_simulated_read_18224962	chr15	-	3309	27	ISM	ENSMUSG00000022377.17	ENSMUST00000177083.8	4415	28	104148	750	104148	161	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCTTCTGCCTTCACCAG	NA	NA	NA	NA	NA	NA	NA	NA	64080340	63961134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63982754_63982926_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030766_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332
ONT_simulated_read_18226034	chr8	-	1360	1	ISM	ENSMUSG00000031821.12	ENSMUST00000034278.6	3900	5	7521	1791	7521	-1791	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGCCGTATGTGGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	121308522	121307162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_121307200_121308500
ONT_simulated_read_18226688	chr1	-	1514	3	ISM	ENSMUSG00000058076.13	ENSMUST00000081560.5	815	5	11836	-789	11836	789	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGTGCTATTTTGATAGA	NA	NA	NA	NA	NA	NA	NA	NA	170966324	170956186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_170957475_170963561_170963726_170966262
ONT_simulated_read_18231283	chr16	-	5278	17	ISM	ENSMUSG00000033149.18	ENSMUST00000036355.13	5483	18	18317	0	32	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGTGGAAACACTTTC	NA	NA	NA	NA	NA	NA	NA	NA	45646424	45566605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_45568295_45569089_45569176_45571708_45571929_45577461_45577609_45578479_45578571_45583272_45583478_45591034_45591135_45592497_45592639_45595306_45595451_45598075_45598166_45600618_45600730_45601664_45601821_45609351_45609481_45621854_45621993_45623058_45623203_45628488_45628873_45645121
ONT_simulated_read_1823144	chr7	-	613	3	ISM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	1501	1784	1501	-1784	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAGAAGCAAAATTGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	119318520	119316099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_119316293_119317244_119317494_119318349
ONT_simulated_read_18234042	chr6	+	3140	24	NNC	ENSMUSG00000030058.18	novel	4140	24	NA	NA	0	-995	at_least_one_novel_splicesite	TRUE	canonical	NA	NA	NA	NA	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGGCTCGTGCTCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	87864795	87889582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882180_87882250_87884359_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
ONT_simulated_read_18234105	chr13	+	528	3	ISM	ENSMUSG00000021701.9	ENSMUST00000022212.9	2800	14	2	4539	2	-4539	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCACCATAAGCATGTCGT	NA	NA	NA	NA	NA	NA	NA	NA	110531581	110532839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_110531972_110532548_110532657_110532809
ONT_simulated_read_1823763	chr1	-	806	8	ISM	ENSMUSG00000026601.15	ENSMUST00000213088.2	3561	25	1038	62305	23	-43715	internal_fragment	TRUE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAGCGGATGATGGACCA	NA	NA	NA	NA	NA	NA	NA	NA	156246960	156220292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_156220360_156223001_156223124_156225009_156225113_156226061_156226119_156227751_156227838_156230400_156230516_156245803_156245908_156246808
ONT_simulated_read_18238578	chr13	+	1238	3	FSM	ENSMUSG00000000078.8	ENST00000542957.1	4221	3	75	2908	59	-2804	multi-exon	FALSE	canonical	NA	NA	NA	NA	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATCTATTACTGACTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	5911539	5917589	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_5911842_5914766_5915344_5917230
ONT_simulated_read_18240949	chr5	+	1369	9	ISM	ENSMUSG00000037313.17	ENSMUST00000074849.13	2669	15	506	4021	48	-4018	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGAGCCTATTGTGGATG	NA	NA	NA	NA	NA	NA	NA	NA	33815977	33825524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824386_33824512_33825306_33825398_33825477
ONT_simulated_read_18240968	chr17	+	640	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	1750	-541	1750	541	mono-exon	FALSE	NA	NA	NA	NA	NA	605	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAAGACCCCGGGGGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	40158993	40159633	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_40159000_40159600
ONT_simulated_read_18242524	chr1	-	380	1	ISM	ENSMUSG00000041926.16	ENSMUST00000077340.14	2288	11	20993	0	20993	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTGGAGTTATAGAATG	NA	NA	NA	NA	NA	NA	NA	NA	135190829	135190449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_135190400_135190800
ONT_simulated_read_18242944	chr19	+	350	3	ISM	ENSMUSG00000025212.18	ENSMUST00000062213.13	2867	11	130	6540	0	-6244	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGATTGGCCGTATGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	45036242	45038281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_45036330_45037542_45037707_45038182
ONT_simulated_read_18246015	chr17	-	170	1	NIC	ENSMUSG00000096727.4	novel	1352	6	NA	NA	4958	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAACCAGAAGGCCGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	34401326	34401156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_34401200_34401300
ONT_simulated_read_18247536	chr1	-	433	1	ISM	ENSMUSG00000026458.14	ENSMUST00000168515.8	6067	29	34115	1598	20617	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTCCTGCTTGGACTA	NA	NA	NA	NA	NA	NA	NA	NA	134226551	134226118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_134226100_134226600
ONT_simulated_read_18248889	chr10	+	1084	1	NIC	ENSMUSG00000020212.15	novel	3074	14	NA	NA	4720	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTTTGAGATGCATTAG	NA	NA	NA	NA	NA	NA	NA	NA	117982569	117983653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_+_117982600_117983700
ONT_simulated_read_18251604	chr7	-	1214	6	ISM	ENSMUSG00000030556.14	ENSMUST00000053950.10	2923	10	27142	1298	27118	-1298	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCCTGCCTTCCCCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	67267837	67164455	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209813_67267740
ONT_simulated_read_18254771	chr11	-	1132	6	ISM	ENSMUSG00000020315.19	ENSMUST00000011877.13	8238	35	109839	770	88324	-770	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGTATGCAAGGCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	30059933	30050165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_30050715_30051612_30051656_30053247_30053422_30054435_30054675_30059088_30059153_30059870
ONT_simulated_read_18255774	chr8	-	305	1	NIC	ENSMUSG00000031796.8	novel	1295	6	NA	NA	12646	-1642	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCTGAGGTCTACTCAAA	NA	NA	NA	NA	NA	NA	NA	NA	96148826	96148521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_96148500_96148800
ONT_simulated_read_18256358	chr10	-	277	3	ISM	ENSMUSG00000019809.17	ENSMUST00000105539.2	1961	12	21767	743	21485	-743	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTTCTTTCCAGAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	13407097	13400628	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_13400713_13403484_13403582_13407001
ONT_simulated_read_18257511	chr4	+	1937	4	ISM	ENSMUSG00000039852.18	ENSMUST00000105680.9	6503	17	128873	1112	128873	-1112	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTCCTGCCCCGCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	150701722	150705307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_150701937_150702862_150703010_150703481_150703663_150703912
ONT_simulated_read_18258973	chr5	-	517	5	ISM	ENSMUSG00000005103.13	ENSMUST00000005234.13	3089	15	263	18914	92	-18140	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTGCTGCGTTCTTCGAG	NA	NA	NA	NA	NA	NA	NA	NA	38718886	38703069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_38703198_38704286_38704435_38708719_38708811_38718422_38718545_38718858
ONT_simulated_read_18260676	chr12	+	656	7	ISM	ENSMUSG00000021111.16	ENSMUST00000166735.8	1033	9	14928	276	14813	-276	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTCAGAATTTGTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	105765943	105775692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601
ONT_simulated_read_18263008	chr17	-	436	1	ISM	ENSMUSG00000024045.7	ENSMUST00000002699.7	3731	14	4548	12530	4548	-12530	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGATACGGGATTGGGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	32535611	32535175	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32535200_32535600
ONT_simulated_read_18265067	chr4	-	300	1	NIC	ENSMUSG00000028950.4	novel	2863	6	NA	NA	9398	-633	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTGCGTCAGCCCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	152113455	152113155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_152113200_152113500
ONT_simulated_read_18266495	chr13	-	2609	10	ISM	ENSMUSG00000021711.18	ENSMUST00000141557.8	3502	13	11519	375	11501	-375	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAGTTCTAAAAAATATA	NA	NA	NA	NA	NA	NA	NA	NA	104303414	104279038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_104280754_104280911_104281060_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366
ONT_simulated_read_18267370	chr18	+	1611	17	ISM	ENSMUSG00000024410.16	ENST00000590868.5	1923	18	-36	768	35	-768	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCTAAACACCAGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	12301808	12322254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_12301960_12302289_12302367_12304605_12304691_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216
ONT_simulated_read_18269070	chr7	+	568	3	ISM	ENSMUSG00000030609.19	ENSMUST00000107421.8	2007	4	17	2522	17	-2519	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCAAGGTGGTGGTGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	78545698	78555607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_78545763_78552091_78552579_78555590
ONT_simulated_read_18270831	chr19	-	418	1	ISM	ENSMUSG00000024830.18	ENSMUST00000025749.15	4586	15	8742	204	8673	-204	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTACCCACTAGCCCATCC	NA	NA	NA	NA	NA	NA	NA	NA	4204611	4204193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4204200_4204600
ONT_simulated_read_1827127	chr15	-	456	1	ISM	ENSMUSG00000022263.11	ENSMUST00000090247.7	11495	57	292832	1910	14474	-1909	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGCAAACACCAGAATGATG	NA	NA	NA	NA	NA	NA	NA	NA	27733102	27732646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_27732600_27733100
ONT_simulated_read_1827286	chr2	+	3798	24	ISM	ENSMUSG00000016933.18	ENSMUST00000109462.8	5107	32	20127	360	20127	-360	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATGTCTACCCTGGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	160593779	160604846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_160593806_160594007_160594127_160594214_160594301_160594373_160594495_160595104_160595274_160595361_160595485_160595562_160595665_160595743_160595932_160596204_160596406_160596482_160596603_160596680_160596862_160597660_160597739_160598460_160598565_160598789_160598887_160599133_160599204_160599891_160600050_160601373_160601471_160601601_160601827_160601902_160602052_160602999_160603115_160603224_160603387_160603479_160603569_160603658_160603844_160604013
ONT_simulated_read_18274428	chr7	-	1521	5	ISM	ENSMUSG00000040177.11	ENSMUST00000059438.11	6773	6	857	4966	857	-4966	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGATATTTGGTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	130963631	130944914	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_130945534_130952379_130952832_130959188_130959396_130962617_130962691_130963461
ONT_simulated_read_1827727	chr7	-	220	1	ISM	ENSMUSG00000030872.15	ENSMUST00000033160.15	4915	17	33571	710	33571	-710	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAACACAGTATAAACTTGG	NA	NA	NA	NA	NA	NA	NA	NA	121586874	121586654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_121586700_121586900
ONT_simulated_read_1827941	chr10	-	1324	1	ISM	ENSMUSG00000055053.19	ENSMUST00000105321.10	6237	9	27590	2088	27517	864	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGCCCTGAGTGTTAGG	NA	NA	NA	NA	NA	NA	NA	NA	81235431	81234107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_81234100_81235400
ONT_simulated_read_18280231	chr18	-	380	4	ISM	ENSMUSG00000024357.11	ENSMUST00000025215.10	1703	10	80746	59048	80679	-59048	internal_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCATTGAGGAGCTGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	35551236	35458496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_35458529_35474150_35474251_35481692_35481814_35551109
ONT_simulated_read_18282086	chr19	+	410	3	ISM	ENSMUSG00000011752.8	ENSMUST00000011896.8	1775	4	153	1994	153	-1994	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGACCAGCTCCCCTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	41900514	41905105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_41900626_41904043_41904319_41905081
ONT_simulated_read_18283023	chr11	-	291	1	ISM	ENSMUSG00000057897.15	ENSMUST00000109813.9	4023	21	95646	168	95436	-140	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGCTGTAGTGTGTTACT	NA	NA	NA	NA	NA	NA	NA	NA	5920102	5919811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_5919800_5920100
ONT_simulated_read_18285741	chr1	-	2559	22	ISM	ENSMUSG00000052331.15	ENST00000328737.6	3241	25	25548	1042	25548	-1042	internal_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTGCAGACGTGAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	54806143	54692912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_54692985_54694238_54694322_54694819_54694966_54696774_54696859_54698077_54698166_54700159_54700377_54701812_54701931_54703057_54703146_54706530_54706733_54720278_54720351_54762172_54762285_54766648_54766730_54768892_54769034_54772086_54772156_54774154_54774219_54775388_54775472_54782472_54782588_54792048_54792128_54801419_54801633_54802803_54802947_54805508_54805597_54805942
ONT_simulated_read_18286195	chr19	-	173	2	ISM	ENSMUSG00000041845.12	ENST00000532559.1	417	3	18	596	18	-596	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGATAGACCTGCGTAAGG	NA	NA	NA	NA	NA	NA	NA	NA	4489364	4476733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4476790_4489247
ONT_simulated_read_18286543	chr10	-	1200	1	ISM	ENSMUSG00000020132.11	ENSMUST00000020343.9	4602	7	24696	2612	24696	-2612	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGTGATGTACGTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	115126800	115125600	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_115125600_115126800
ONT_simulated_read_18287525	chr14	-	903	1	ISM	ENSMUSG00000072676.13	ENSMUST00000185006.9	2147	4	2776	694	2354	176	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGCATCTGAGTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	25925320	25924417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_25924400_25925300
ONT_simulated_read_18287568	chr7	-	221	1	NIC	ENSMUSG00000036733.17	novel	1526	9	NA	NA	8849	0	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGACTGGACTTAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	30340646	30340425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_30340400_30340600
ONT_simulated_read_18288121	chr11	-	1191	9	ISM	ENSMUSG00000032633.13	ENSMUST00000091246.11	2768	13	5733	2354	5733	-2354	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTCTGTGGATGTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	59694681	59684969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_59685018_59685098_59685231_59685966_59686091_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574
ONT_simulated_read_18289409	chr9	+	1165	1	ISM	ENSMUSG00000002820.7	ENSMUST00000065005.5	5951	10	8936	2379	8936	-2379	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCAAACTATCTTCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	21185524	21186689	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_21185500_21186700
ONT_simulated_read_18290212	chr10	+	2364	4	ISM	ENSMUSG00000063428.9	ENSMUST00000213442.2	2408	5	1558	0	1527	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTCTACTGTTCTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	40507599	40517564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_40507777_40508933_40509043_40513340_40513518_40515663
ONT_simulated_read_18292029	chr12	-	2291	1	ISM	ENSMUSG00000021127.8	ENSMUST00000021552.3	2990	2	2478	491	2459	453	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTTATTTTATTTTAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	80157309	80155018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_80155000_80157300
ONT_simulated_read_18292889	chr9	+	1160	13	ISM	ENSMUSG00000057193.9	ENSMUST00000217461.2	3478	22	50	9512	50	-8463	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGACCTTCTTCCTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	21232043	21256812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774
ONT_simulated_read_18292911	chr6	-	274	2	FSM	ENSMUSG00000030316.14	ENST00000273037.9	283	2	26	-17	26	-7	multi-exon	FALSE	canonical	NA	NA	NA	NA	882	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCTTGTCACTCTG	NA	NA	NA	NA	NA	NA	NA	NA	114989260	114981348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_114981481_114989118
ONT_simulated_read_18294518	chr2	-	1166	2	ISM	ENSMUSG00000057234.10	ENSMUST00000081631.10	1894	6	146641	0	146641	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTTATTTATTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	108961994	108922641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_108923643_108961829
ONT_simulated_read_18296844	chr2	-	423	3	ISM	ENSMUSG00000002732.15	ENSMUST00000002809.14	860	4	1248	146	1193	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATTACTTCTCTATTTG	NA	NA	NA	NA	NA	NA	NA	NA	76502166	76493533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_76493697_76496020_76496155_76502040
ONT_simulated_read_18299322	chr18	+	905	7	ISM	ENSMUSG00000003779.17	ENSMUST00000237407.2	3674	19	272	5095	-26	-4516	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTACCATGAGTGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	34758059	34761235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105
ONT_simulated_read_18302684	chr15	+	746	1	ISM	ENSMUSG00000064210.8	ENSMUST00000071874.8	4927	20	182005	1158	181956	634	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGCAGATGCAGAAGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	95870728	95871474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_95870700_95871500
ONT_simulated_read_18303334	chr4	-	2259	1	NIC	ENSMUSG00000014592.22	novel	5208	25	NA	NA	45760	-744	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGGAACAGCGACAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	151147273	151145014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_151145000_151147300
ONT_simulated_read_18304920	chrX	-	831	3	ISM	ENSMUSG00000031111.17	ENSMUST00000072037.13	2515	13	1177	4972	1177	1647	internal_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATACAACACTGTGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	48883064	48880195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_48880458_48880691_48880977_48882780
ONT_simulated_read_18305232	chr3	-	1484	8	ISM	ENSMUSG00000028134.12	ENST00000675401.1	2746	9	254	1095	254	-864	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACAGCATTTTTAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	119541351	119513506	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_119514107_119514255_119514334_119514437_119514655_119517742_119517836_119518260_119518295_119519714_119519870_119533963_119534160_119541240
ONT_simulated_read_18306178	chr8	-	1932	1	ISM	ENSMUSG00000034189.6	ENSMUST00000036049.6	3141	5	11079	184	5891	-184	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGCAGAAGACTCGAATC	NA	NA	NA	NA	NA	NA	NA	NA	120290843	120288911	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_120288900_120290800
ONT_simulated_read_18306727	chr14	-	419	1	NIC	ENSMUSG00000037712.18	novel	3293	15	NA	NA	70094	-811	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACTGACAGTAACCAAACT	NA	NA	NA	NA	NA	NA	NA	NA	45697481	45697062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_45697100_45697500
ONT_simulated_read_18306897	chr8	-	503	2	ISM	ENSMUSG00000002910.12	ENSMUST00000002989.11	2355	8	3356	508	2664	-508	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTTCCAAAGGGCATTTC	NA	NA	NA	NA	NA	NA	NA	NA	71289008	71288280	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71288639_71288863
ONT_simulated_read_18307108	chr4	+	608	2	ISM	ENSMUSG00000035649.18	ENSMUST00000107824.9	2503	9	20	169851	20	-123	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAGTACCACTTCAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	44756587	44762352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_44756693_44761849
ONT_simulated_read_18307421	chr9	-	871	1	NIC	ENSMUSG00000025786.18	novel	5376	7	NA	NA	29949	2561	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTAAGACATGGGGACAG	NA	NA	NA	NA	NA	NA	NA	NA	122899684	122898813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_122898800_122899700
ONT_simulated_read_18308623	chr8	-	1013	4	NIC	ENSMUSG00000004319.16	novel	2609	11	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	1435	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGGAATAATGATATCTC	NA	NA	NA	NA	NA	NA	NA	NA	61394448	61382083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_61382651_61390333_61390522_61391581_61391682_61394290
ONT_simulated_read_18311381	chr1	+	878	6	ISM	ENSMUSG00000026201.13	ENSMUST00000027401.11	2876	8	42	2419	42	-844	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAAGCCACTGTGTCATC	NA	NA	NA	NA	NA	NA	NA	NA	75187523	75189831	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776
ONT_simulated_read_18313802	chr15	-	2356	12	ISM	ENSMUSG00000022241.7	ENST00000455217.6	2179	18	5384	-985	5384	-738	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	125	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGGATTAACCCTCTAGT	NA	NA	NA	NA	NA	NA	NA	NA	11391948	11383124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899
ONT_simulated_read_1831501	chr6	-	509	4	ISM	ENSMUSG00000030298.11	ENSMUST00000032440.6	1353	9	9835	299	9835	-299	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	680	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAGCAGTGACAGCACAGG	NA	NA	NA	NA	NA	NA	NA	NA	113707869	113705321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113705425_113706556_113706704_113707295_113707420_113707734
ONT_simulated_read_18316468	chr13	+	966	4	ISM	ENSMUSG00000021420.14	ENSMUST00000021857.13	2125	7	468	291175	5	-291091	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTCGAGATGGAGATCAA	NA	NA	NA	NA	NA	NA	NA	NA	36301862	36430392	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_36301989_36388491_36389125_36416104_36416265_36430345
ONT_simulated_read_18316602	chr4	+	658	5	ISM	ENSMUSG00000029056.14	ENSMUST00000030931.11	2508	19	10	10386	0	-10386	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTGGAGGAGGCACCTT	NA	NA	NA	NA	NA	NA	NA	NA	155048589	155054942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903
ONT_simulated_read_18317322	chr1	-	547	1	ISM	ENSMUSG00000033722.10	ENSMUST00000186156.7	4873	10	18001	13426	6297	-13424	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGAATGGATCCGGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	155102189	155101642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_155101600_155102200
ONT_simulated_read_1831933	chr5	-	599	1	NIC	ENSMUSG00000037007.18	novel	6470	5	NA	NA	-401	-252	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACCTTTAGCTGGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	138143975	138143376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_138143400_138144000
ONT_simulated_read_18319910	chr3	+	230	3	ISM	ENSMUSG00000034349.15	ENSMUST00000107803.7	3983	24	25382	2857	25382	-2857	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATCGTAATCTACTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	68937705	68939094	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_68937766_68938740_68938886_68939069
ONT_simulated_read_18320291	chr6	+	817	6	ISM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	60	6530	0	-6233	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGGAAGAGGGTCCAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	67244054	67254765	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744
ONT_simulated_read_18321440	chr4	+	248	3	ISM	ENSMUSG00000028645.12	ENSMUST00000030398.10	3260	10	203	5768	203	-5768	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATCTTCTCTGTCGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	118966110	118989412	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_118966170_118977587_118977684_118989319
ONT_simulated_read_18321750	chr2	-	470	4	ISM	ENSMUSG00000027193.13	ENST00000420461.6	2014	13	11056	10250	11056	-10250	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTCATTTTGTGGTGACA	NA	NA	NA	NA	NA	NA	NA	NA	94257412	94253823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_94253847_94255318_94255424_94255935_94256143_94257277
ONT_simulated_read_18324000	chr4	-	512	1	NIC	ENSMUSG00000028790.14	novel	3738	9	NA	NA	25973	413	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGTTGCAGAATCCCAAAC	NA	NA	NA	NA	NA	NA	NA	NA	129609980	129609468	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_129609500_129610000
ONT_simulated_read_18325772	chr18	+	1093	6	NIC	ENSMUSG00000044024.17	novel	1767	8	NA	NA	190	-60	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAATAGCACCTTAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	38088866	38092113	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_+_38088963_38089981_38090048_38090141_38090209_38090641_38090828_38091066_38091443_38091811
ONT_simulated_read_183269	chr2	-	655	6	ISM	ENSMUSG00000075023.12	ENSMUST00000099690.4	2224	15	8040	1357	2052	2	internal_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACCTTCACCTACAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	93691462	93687062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361
ONT_simulated_read_18328554	chr5	-	771	1	ISM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	17873	1126	17730	-970	mono-exon	FALSE	NA	NA	NA	NA	NA	614	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGCGACCTGGGTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	134650471	134649700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_134649700_134650500
ONT_simulated_read_18335833	chr4	-	825	3	ISM	ENSMUSG00000039759.11	ENSMUST00000036680.8	1124	4	3157	163	3116	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGAGAGCTGGTCATTCT	NA	NA	NA	NA	NA	NA	NA	NA	152070297	152067258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_152067810_152068091_152068194_152070125
ONT_simulated_read_1833655	chr17	+	383	3	ISM	ENSMUSG00000024044.20	ENSMUST00000233509.2	2736	20	66906	3044	66906	-3044	internal_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCGCACACAGCCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	69581770	69591673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_69581891_69590879_69591003_69591533
ONT_simulated_read_18339024	chr13	-	1358	1	NIC	ENSMUSG00000052727.7	novel	11808	7	NA	NA	5851	-778	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAGGAAATGTGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	99578277	99576919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_99576900_99578300
ONT_simulated_read_18341901	chr1	-	1092	1	ISM	ENSMUSG00000039395.9	ENSMUST00000048860.9	2284	5	51326	448	51326	-448	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGTTGAAAAGCCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	72200140	72199048	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_72199000_72200100
ONT_simulated_read_18343025	chr2	-	1132	1	ISM	ENSMUSG00000038605.12	ENSMUST00000060173.9	2164	5	2610	253	2610	-253	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAGTTAATTTGGGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	181238395	181237263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_181237300_181238400
ONT_simulated_read_18343471	chr16	+	934	8	ISM	ENSMUSG00000039427.15	ENST00000684190.1	1368	12	18	4036	0	-2085	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACTAACAAGAACACCATG	NA	NA	NA	NA	NA	NA	NA	NA	5051501	5058382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_5051722_5052829_5052908_5053026_5053131_5054183_5054333_5056508_5056599_5056919_5057031_5057769_5057892_5058322
ONT_simulated_read_18343480	chr16	-	760	1	ISM	ENSMUSG00000022960.14	ENSMUST00000117159.8	2215	10	8741	0	8741	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTGGGTAAGAAACAAAT	NA	NA	NA	NA	NA	NA	NA	NA	91476912	91476152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_91476200_91476900
ONT_simulated_read_18345333	chrX	+	806	6	ISM	ENSMUSG00000025246.14	ENSMUST00000088217.12	5234	16	201	15059	201	-12873	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAATTTGGGACTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	76554819	76691530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_76554876_76677151_76677247_76684999_76685114_76687016_76687163_76689813_76690076_76691397
ONT_simulated_read_18346630	chr14	-	823	1	ISM	ENSMUSG00000022023.7	ENSMUST00000022601.7	3704	10	19421	1340	19421	-1340	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATAGAGGGGCAGCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	79699539	79698716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_79698700_79699500
ONT_simulated_read_18346731	chr16	-	1370	2	ISM	ENSMUSG00000002844.10	ENSMUST00000002923.10	2966	4	5112	1049	5112	-1049	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	631	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGGTTGTATTATGTTA	NA	NA	NA	NA	NA	NA	NA	NA	38267953	38265440	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_38266467_38267609
ONT_simulated_read_18348347	chr2	-	275	1	ISM	ENSMUSG00000054074.10	ENSMUST00000091420.6	4376	2	1646	3048	1031	-1604	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCCTCAGAGGAAGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	18052216	18051941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_18051900_18052200
ONT_simulated_read_18348839	chr18	+	940	6	ISM	ENSMUSG00000000420.16	ENSMUST00000170243.8	4108	13	192	22309	192	-22309	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCTGTTGGCCCGGATC	NA	NA	NA	NA	NA	NA	NA	NA	24339015	24397558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_24339138_24365655_24365711_24371298_24371543_24379106_24379282_24387574_24387742_24397381
ONT_simulated_read_18349389	chr1	-	1064	6	ISM	ENSMUSG00000026355.12	ENSMUST00000027601.11	2910	17	20207	100	20190	-97	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	224	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCTGCTGCATTTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	128267194	128259426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086
ONT_simulated_read_18351357	chr10	+	851	4	ISM	ENSMUSG00000003345.17	ENSMUST00000079773.14	2348	11	0	2463	0	-2059	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGACGGTGCTGATGATCG	NA	NA	NA	NA	NA	NA	NA	NA	80458671	80474112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_80458785_80470047_80470476_80473721_80473763_80473843
ONT_simulated_read_1835729	chr18	+	783	6	ISM	ENSMUSG00000037815.8	ENSMUST00000042345.8	3733	18	24	75001	24	-74819	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTACAACACCCTGATGTT	NA	NA	NA	NA	NA	NA	NA	NA	35251935	35312831	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737
ONT_simulated_read_18357820	chr13	-	2757	1	ISM	ENSMUSG00000034152.7	ENSMUST00000035934.7	4922	13	36465	0	36465	0	mono-exon	FALSE	NA	NA	NA	NA	NA	159	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGGTAGGATTTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	74320363	74317606	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_74317600_74320400
ONT_simulated_read_1835917	chr2	+	422	3	ISM	ENSMUSG00000036617.18	ENSMUST00000114604.9	4786	18	20	147967	-17	-82898	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGTCCTCAACCTCCCAA	NA	NA	NA	NA	NA	NA	NA	NA	20524621	20666729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_20524739_20534769_20535054_20666708
ONT_simulated_read_18361893	chr18	-	903	5	ISM	ENSMUSG00000047879.18	ENSMUST00000116669.2	2019	15	28204	140	28204	-140	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGGAAGGTGGAAAAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	10001863	9995733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770
ONT_simulated_read_18365603	chr2	-	733	1	NIC	ENSMUSG00000046110.16	novel	2240	10	NA	NA	4230	-554	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	968	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTTTCTGGTTCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	121282944	121282211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_121282200_121282900
ONT_simulated_read_18366983	chr2	-	144	1	ISM	ENSMUSG00000074643.13	ENSMUST00000184265.8	871	7	39887	63	39853	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATGTTACCCTTTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	155913968	155913824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155913800_155914000
ONT_simulated_read_18368746	chr14	-	412	4	ISM	ENSMUSG00000034194.19	ENSMUST00000121142.4	1958	7	3405	185	3405	-185	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCAAGTGTTCTGCCATC	NA	NA	NA	NA	NA	NA	NA	NA	69941537	69934941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402
ONT_simulated_read_1837021	chr2	+	694	5	ISM	ENSMUSG00000017760.17	ENST00000678443.1	1625	13	3128	97	3128	-97	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCCTGACCTCCCCGACT	NA	NA	NA	NA	NA	NA	NA	NA	164679101	164681367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_164679178_164679276_164679417_164679996_164680073_164680764_164680870_164681070
ONT_simulated_read_18373570	chr11	-	906	2	ISM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	7736	1747	7487	-1747	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	387	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCCCACCGGCTGGGGAT	NA	NA	NA	NA	NA	NA	NA	NA	93851611	93849551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_93850340_93851493
ONT_simulated_read_18374123	chr4	+	317	3	ISM	ENSMUSG00000042489.16	ENST00000251195.9	3969	24	15394	17067	15315	-17067	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAACAGATAAAGAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	126466207	126468482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_126466264_126466928_126467141_126468433
ONT_simulated_read_1837658	chr10	+	1816	17	ISM	ENSMUSG00000038822.16	ENST00000369125.6	3073	19	10567	2358	10555	-2358	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTATGGGTGGAAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	45464479	45586004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_45464531_45465576_45465667_45466363_45466469_45481604_45481681_45494593_45494726_45514416_45514500_45524686_45524784_45524949_45525052_45525976_45526084_45528683_45528835_45546441_45546777_45547227_45547297_45547534_45547623_45562697_45562830_45576672_45576772_45577049_45577121_45585976
ONT_simulated_read_18379244	chr18	+	552	4	ISM	ENSMUSG00000024483.20	ENST00000297183.10	7604	33	94926	18	94819	-18	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAAATATGTCAACTAAGT	NA	NA	NA	NA	NA	NA	NA	NA	36788562	36791494	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_36788731_36789738_36789916_36791026_36791192_36791452
ONT_simulated_read_18380640	chr8	-	1834	11	ISM	ENSMUSG00000031835.17	ENSMUST00000098362.11	4336	24	10857	20835	10857	-20835	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGCCAACAATCGTTAATG	NA	NA	NA	NA	NA	NA	NA	NA	120274609	120255729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138
ONT_simulated_read_1838154	chr9	-	1384	9	ISM	ENSMUSG00000032254.11	ENSMUST00000034815.9	3398	23	21087	304	11850	-304	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATCTTGCAGAAGAATGTA	NA	NA	NA	NA	NA	NA	NA	NA	61832969	61824865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811
ONT_simulated_read_18382479	chr9	-	499	6	ISM	ENSMUSG00000032314.15	ENST00000433983.6	825	10	23178	3177	23178	-3177	internal_fragment	FALSE	canonical	NA	NA	NA	NA	1253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATTCTGTGCTATAATTA	NA	NA	NA	NA	NA	NA	NA	NA	55396181	55372077	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_55372144_55389556_55389640_55392553_55392623_55393985_55394088_55394683_55394795_55396113
ONT_simulated_read_18382755	chr7	-	346	4	ISM	ENSMUSG00000030538.16	ENSMUST00000071457.12	702	5	59	904	0	-904	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGGGATGGGACCATCA	NA	NA	NA	NA	NA	NA	NA	NA	79882313	79877810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_79877831_79877909_79878029_79878145_79878297_79882257
ONT_simulated_read_18382867	chr8	-	621	4	ISM	ENSMUSG00000033282.15	ENST00000262135.9	7197	24	2245	82607	2245	-82266	internal_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAGAAAAGAAAATGAAATC	NA	NA	NA	NA	NA	NA	NA	NA	92034811	92025923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_92026001_92027405_92027509_92031346_92031646_92034669
ONT_simulated_read_18384079	chr10	-	622	1	NIC	ENSMUSG00000049858.9	novel	2497	4	NA	NA	2146	-1412	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAGGGGCCATCAGCAC	NA	NA	NA	NA	NA	NA	NA	NA	128507796	128507174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_128507200_128507800
ONT_simulated_read_18384499	chr13	-	416	1	FSM	ENSMUSG00000112969.2	ENSMUST00000221425.2	256	1	0	-160	0	160	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTGTCCGTCATCTGCAA	NA	NA	NA	NA	NA	NA	NA	NA	16606365	16605949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_16605900_16606400
ONT_simulated_read_1838488	chr3	-	1588	13	ISM	ENSMUSG00000037325.11	ENSMUST00000108155.8	2437	18	2929	906	274	-495	internal_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAGGAAAATTAATCT	NA	NA	NA	NA	NA	NA	NA	NA	36664505	36629925	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_36630002_36632544_36632710_36636774_36636915_36644800_36644867_36646513_36646589_36648516_36648710_36652414_36652518_36653487_36653573_36656977_36657109_36658554_36658672_36659832_36659906_36661669_36661857_36664328
ONT_simulated_read_18384963	chr6	-	809	1	ISM	ENSMUSG00000055239.11	ENSMUST00000068697.11	3251	7	56872	1185	56185	270	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAAAGCCAGCTCTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	72820090	72819281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_72819300_72820100
ONT_simulated_read_18387546	chr9	-	1106	10	ISM	ENSMUSG00000032422.19	ENST00000682738.1	2772	27	31345	17612	15554	-17612	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTGAAAGAAACGACAGAC	NA	NA	NA	NA	NA	NA	NA	NA	88289518	88276445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_88276622_88280291_88280425_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378
ONT_simulated_read_18388078	chr4	+	729	7	ISM	ENSMUSG00000043411.16	ENSMUST00000105840.8	5741	27	31023	20661	30956	-20661	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTATATTTCTGAACCTA	NA	NA	NA	NA	NA	NA	NA	NA	137352473	137365181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070
ONT_simulated_read_18389062	chr18	+	1295	4	ISM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	14377	1487	11585	-1487	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGAACTCTGGCCAGAT	NA	NA	NA	NA	NA	NA	NA	NA	13119356	13124520	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_13119455_13121351_13121443_13122801_13122937_13123549
ONT_simulated_read_18389547	chr5	+	518	4	ISM	ENSMUSG00000029361.19	ENSMUST00000171055.2	4388	28	69422	9930	69422	-9930	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTCCCCTGCTTCGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	118074605	118081948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_118074678_118076201_118076372_118081189_118081401_118081883
ONT_simulated_read_18394214	chr7	-	1675	1	ISM	ENSMUSG00000038520.16	ENSMUST00000047085.16	8750	17	7655	5123	7466	-5123	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGCGTCTTCTCGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	44490844	44489169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44489200_44490800
ONT_simulated_read_1839464	chr9	-	358	3	ISM	ENSMUSG00000032281.12	ENSMUST00000034822.12	2880	14	33244	22627	33244	-22627	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACATCTCTCATGACTGCC	NA	NA	NA	NA	NA	NA	NA	NA	54535910	54534787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_54534836_54535153_54535243_54535689
ONT_simulated_read_18396377	chr11	-	418	2	ISM	ENSMUSG00000000202.10	ENSMUST00000000206.4	1717	3	1781	1155	1781	-1155	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTACCACTACGCTGTTAG	NA	NA	NA	NA	NA	NA	NA	NA	114684942	114683197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_114683349_114684675
ONT_simulated_read_18396834	chr11	-	1005	6	ISM	ENSMUSG00000020937.15	ENSMUST00000103077.2	3023	15	20992	7271	20992	-7271	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGGAACCTGTCATCTA	NA	NA	NA	NA	NA	NA	NA	NA	102971492	102968400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_102968453_102968586_102968789_102969064_102969294_102970365_102970496_102971012_102971242_102971329
ONT_simulated_read_18398443	chr1	-	1031	1	ISM	ENSMUSG00000033845.14	ENSMUST00000146665.3	1569	4	3488	0	3459	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTATATAAGAGTTTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	4852474	4851443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_4851400_4852500
ONT_simulated_read_18399033	chr16	-	1494	4	ISM	ENSMUSG00000022898.14	ENSMUST00000023615.7	2547	8	22443	196	22052	-196	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	343	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGAAGACTTAGCTGAGTC	NA	NA	NA	NA	NA	NA	NA	NA	94305246	94298837	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_94299942_94302393_94302547_94302940_94303092_94305160
ONT_simulated_read_18400054	chr4	-	878	9	ISM	ENSMUSG00000029036.19	ENSMUST00000030903.12	2413	16	7475	5426	7475	-5426	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCCGGGAGATTGCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	155838075	155830523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893_155836050_155838023
ONT_simulated_read_1840033	chr11	+	493	4	NIC	ENSMUSG00000060938.15	novel	526	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCTTGTGTGGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	68792435	68795360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_68792451_68793095_68793263_68794004_68794146_68795190
ONT_simulated_read_18401196	chr7	-	1499	1	NIC	ENSMUSG00000030530.16	novel	3957	15	NA	NA	7525	-603	mono-exon	FALSE	NA	NA	NA	NA	NA	405	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGACCTTCTCATGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	80041045	80039546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_80039500_80041000
ONT_simulated_read_1840368	chr9	-	453	1	ISM	ENSMUSG00000003131.8	ENSMUST00000172450.3	6873	6	16107	5633	9785	192	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAACCAGAAGGGGACTT	NA	NA	NA	NA	NA	NA	NA	NA	45880242	45879789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_45879800_45880200
ONT_simulated_read_18404126	chr13	-	2130	8	ISM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	666	171	498	-89	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAAAGAATCCTGTCTCA	NA	NA	NA	NA	NA	NA	NA	NA	100922412	100915328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240
ONT_simulated_read_18404187	chr9	-	471	1	FSM	ENSMUSG00000101464.2	ENSMUST00000187229.2	391	1	0	-80	0	80	mono-exon	FALSE	NA	NA	NA	NA	NA	675	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACCCTGTTCTGTAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	105423026	105422555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_105422600_105423000
ONT_simulated_read_18406958	chr2	+	831	1	ISM	ENSMUSG00000050373.14	ENSMUST00000056181.7	2590	3	6989	0	6963	0	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGTGGAGTCTGGGTT	NA	NA	NA	NA	NA	NA	NA	NA	164634899	164635730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_164634900_164635700
ONT_simulated_read_18407442	chr15	-	1139	1	ISM	ENSMUSG00000022526.9	ENSMUST00000080406.7	4036	4	16862	1826	16862	-1826	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGGAAGGCCTTCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	76738773	76737634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76737600_76738800
ONT_simulated_read_18409082	chr4	-	855	8	ISM	ENSMUSG00000033365.15	ENSMUST00000036156.6	3595	20	13947	0	13947	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGCCTCCTTTCTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	117758249	117751682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_117751855_117751940_117752123_117752408_117752499_117752616_117752676_117752759_117752827_117754964_117755018_117757845_117757943_117758114
ONT_simulated_read_18409655	chr2	-	296	1	ISM	ENSMUSG00000000876.12	ENSMUST00000109703.3	560	3	8147	0	8147	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCAAGTTTTCTGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	154437461	154437165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_154437200_154437500
ONT_simulated_read_18410817	chr1	-	707	1	ISM	ENSMUSG00000044783.17	ENSMUST00000054674.15	4878	8	10993	3463	10866	-956	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAGGAATATTGCCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	88194362	88193655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_88193700_88194400
ONT_simulated_read_18411251	chr18	-	1455	6	ISM	ENSMUSG00000048799.9	ENSMUST00000049811.8	4554	21	35407	901	35110	27	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCACTTGAAGACCATGA	NA	NA	NA	NA	NA	NA	NA	NA	53842212	53815695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_53816537_53818954_53819101_53830666_53830766_53836193_53836317_53839891_53840054_53842128
ONT_simulated_read_18411347	chr16	+	2476	17	ISM	ENSMUSG00000022770.18	ENST00000661336.1	4218	23	126953	993	36988	21	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGCAGGTCTTTATTGTG	NA	NA	NA	NA	NA	NA	NA	NA	31610588	31691159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665651_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ONT_simulated_read_1841216	chr1	-	997	6	ISM	ENSMUSG00000054387.14	ENST00000616250.4	1144	7	6508	0	-4	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGAGTCAGTCACAGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	132946596	132919394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_132919964_132922240_132922322_132936874_132936931_132938802_132938937_132940374_132940450_132946514
ONT_simulated_read_18417123	chr9	+	380	5	ISM	ENSMUSG00000019659.9	ENSMUST00000019803.9	834	7	22	1444	22	-1444	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGTTGGGGGGTGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	110485592	110539230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_110485727_110521383_110521452_110537513_110537594_110538961_110539024_110539194
ONT_simulated_read_18417204	chr7	-	1511	8	ISM	ENSMUSG00000002265.18	ENSMUST00000051209.11	8694	9	3847	7019	3847	-7019	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAGGTGTGCAAGGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	6729573	6713909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_6714731_6714849_6714943_6715671_6715775_6719052_6719157_6720111_6720196_6720797_6720888_6721424_6721556_6729488
ONT_simulated_read_18418308	chrX	-	2363	1	ISM	ENSMUSG00000046873.19	ENSMUST00000058098.15	4797	11	47606	923	47541	-923	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTAATAAGAGGAAATTC	NA	NA	NA	NA	NA	NA	NA	NA	156334105	156331742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_156331700_156334100
ONT_simulated_read_18420529	chr3	-	1674	11	ISM	ENSMUSG00000104301.4	ENSMUST00000193989.4	2413	15	84639	23170	54701	-23166	internal_fragment	TRUE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCCGGAAGAGGATGTATC	NA	NA	NA	NA	NA	NA	NA	NA	75304408	75205464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_75205560_75209113_75209218_75230909_75231092_75239547_75239746_75240496_75240685_75242504_75242667_75245058_75245158_75246708_75246840_75265653_75265770_75289221_75289387_75304174
ONT_simulated_read_18421551	chr14	-	1160	11	ISM	ENSMUSG00000033487.15	ENST00000398316.7	5732	24	28334	21363	28334	-21363	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGCCCATGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	72812121	72796753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962
ONT_simulated_read_18421678	chr7	-	405	1	ISM	ENSMUSG00000092574.5	ENSMUST00000210322.2	1179	5	6072	239	5869	-178	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCCATTCAGGTACAGT	NA	NA	NA	NA	NA	NA	NA	NA	8089968	8089563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_8089600_8090000
ONT_simulated_read_18421990	chr9	-	1032	6	ISM	ENSMUSG00000032340.9	ENST00000558964.5	4474	28	146974	-34	146974	34	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAAACAAGGAATTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	58796503	58784500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_58784641_58785310_58785448_58787874_58788139_58791752_58791912_58795683_58795777_58796264
ONT_simulated_read_18426269	chr8	-	414	1	ISM	ENSMUSG00000031453.17	ENSMUST00000117551.4	4404	24	108884	1358	108884	-1358	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGCACTCTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	13618719	13618305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_13618300_13618700
ONT_simulated_read_18427356	chr1	-	1252	7	NIC	ENSMUSG00000016481.16	novel	2776	10	NA	NA	2097	134	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGGAAGACTTTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	194811534	194780832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_194781150_194789125_194789231_194793387_194793464_194796963_194797150_194799786_194800189_194805997_194806084_194811454
ONT_simulated_read_1842775	chr8	-	252	2	ISM	ENSMUSG00000039509.9	ENSMUST00000044795.8	5808	26	28335	21705	28335	-21705	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGGAGTGTGAGGTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	124647669	124645566	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_124645736_124647586
ONT_simulated_read_18432513	chr6	+	2255	1	ISM	ENSMUSG00000000439.10	ENSMUST00000000449.9	6230	8	17489	979	17489	-979	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAATAATAAAACCTT	NA	NA	NA	NA	NA	NA	NA	NA	115596351	115598606	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_115596400_115598600
ONT_simulated_read_18434633	chr1	+	563	1	ISM	ENSMUSG00000026319.14	ENST00000256858.10	5451	29	19	90669	0	-89266	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACACCGAGCTGTTGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	105591607	105592170	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_105591600_105592200
ONT_simulated_read_1843570	chr9	+	319	1	FSM	ENSMUSG00000035337.4	ENSMUST00000039011.4	1162	1	0	843	0	-843	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGGAACGATTGGAACGA	NA	NA	NA	NA	NA	NA	NA	NA	64142482	64142801	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_64142500_64142800
ONT_simulated_read_18436789	chr7	-	692	4	ISM	ENSMUSG00000059146.13	ENSMUST00000193002.6	2678	18	330404	78	330398	-78	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTCCTTTCTTCCATTTT	NA	NA	NA	NA	NA	NA	NA	NA	77897133	77842232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_77842493_77848540_77848700_77853850_77853893_77896902
ONT_simulated_read_18438120	chr6	-	1048	1	ISM	ENSMUSG00000029701.16	ENSMUST00000007993.16	4465	19	39530	853	39530	-853	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCCTGGAGAGCGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	29125475	29124427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_29124400_29125500
ONT_simulated_read_18439176	chr12	-	343	3	ISM	ENSMUSG00000002799.7	ENSMUST00000075827.5	5106	26	15270	6191	15270	-6191	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGTGCATTGACGAAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	112878126	112877629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_112877670_112877745_112877899_112877976
ONT_simulated_read_18441945	chr7	-	913	7	ISM	ENSMUSG00000053158.11	ENST00000444422.2	2260	17	374	4676	374	-4676	internal_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGAGCAAGATGGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	80036708	80032354	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80032456_80032558_80032682_80032817_80032938_80033016_80033155_80033581_80033766_80033938_80034036_80036558
ONT_simulated_read_18442760	chr8	-	229	1	Genic_Genomic	ENSMUSG00000051648.14	novel	NA	NA	NA	NA	25594	4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTAGATTTCTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	106109663	106109434	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr8_-_106109400_106109700
ONT_simulated_read_1844434	chr1	+	253	2	ISM	ENSMUSG00000048000.16	ENST00000490612.5	506	4	27416	0	0	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGGAATTGGAATAGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	87282167	87282904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_87282209_87282692
ONT_simulated_read_18444610	chr15	-	633	4	ISM	ENSMUSG00000018040.10	ENSMUST00000018184.10	4363	7	3498	3322	3498	-3322	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACTCCCAGGATACCTGG	NA	NA	NA	NA	NA	NA	NA	NA	83003504	83000955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_83001173_83001749_83001949_83002277_83002376_83003385
ONT_simulated_read_18446798	chr10	-	856	4	ISM	ENSMUSG00000037370.14	ENST00000647893.1	2843	24	63896	-182	63894	182	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTACGTGGTCTGGGGACC	NA	NA	NA	NA	NA	NA	NA	NA	24523995	24517395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_24517875_24521175_24521339_24523050_24523184_24523914
ONT_simulated_read_18447245	chrX	+	663	5	ISM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	0	13962	0	-13962	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTACACTGGGCCTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	20529136	20535456	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366
ONT_simulated_read_18447863	chr5	+	861	1	ISM	ENSMUSG00000000915.16	ENSMUST00000000939.15	6735	32	31020	50	31020	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTTTCTTTTGAAATAT	NA	NA	NA	NA	NA	NA	NA	NA	124142710	124143571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_124142700_124143600
ONT_simulated_read_18449641	chr13	-	374	1	ISM	ENSMUSG00000114662.2	ENSMUST00000224935.2	887	2	10190	0	10190	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGATCGAACCGGCTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	41061181	41060807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_41060800_41061200
ONT_simulated_read_18450261	chr3	-	1231	9	ISM	ENSMUSG00000062232.15	ENST00000644902.1	6683	23	15	30354	15	-30327	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCCAAACGAAGACTGATG	NA	NA	NA	NA	NA	NA	NA	NA	79080367	79000164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_79000211_79000301_79000410_79001591_79001757_79002119_79002273_79005526_79005686_79006400_79006538_79011269_79011448_79019477_79019610_79080214
ONT_simulated_read_18451196	chr13	-	553	7	ISM	ENSMUSG00000021493.16	ENSMUST00000046246.13	1697	13	4426	7715	4414	642	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGGATCCTGCATTTGC	NA	NA	NA	NA	NA	NA	NA	NA	55656833	55653943	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_55653982_55654118_55654181_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704
ONT_simulated_read_1845354	chr13	-	1341	1	ISM	ENSMUSG00000044934.14	ENSMUST00000059817.12	3532	5	17666	1178	17666	-1178	mono-exon	FALSE	NA	NA	NA	NA	NA	187	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGTGTCTTTCTTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	64283350	64282009	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_64282000_64283400
ONT_simulated_read_18453886	chr2	-	169	1	FSM	ENSMUSG00000083567.4	ENSMUST00000118946.2	630	1	0	461	0	-461	mono-exon	FALSE	NA	NA	NA	NA	NA	159	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGCATGCTTTTATATG	NA	NA	NA	NA	NA	NA	NA	NA	162741443	162741274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_162741300_162741400
ONT_simulated_read_18455262	chr11	-	490	1	ISM	ENSMUSG00000020142.13	ENSMUST00000109594.8	3926	8	28216	1828	15738	108	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAGTTCATGGAGGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	20254497	20254007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_20254000_20254500
ONT_simulated_read_18456482	chr8	-	935	1	ISM	ENSMUSG00000001911.17	ENSMUST00000109764.8	5476	11	64751	2999	64751	833	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCCCCCGGAGCTGAGCG	NA	NA	NA	NA	NA	NA	NA	NA	85435274	85434339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85434300_85435300
ONT_simulated_read_18457555	chr5	+	1400	5	ISM	ENSMUSG00000070498.4	ENST00000299308.7	3603	9	1	11061	1	-11061	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACGATTGTCAACTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	125699551	125855757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_125700417_125715245_125715393_125775627_125775815_125826298_125826443_125855700
ONT_simulated_read_18459653	chr14	-	983	4	ISM	ENSMUSG00000097589.10	ENSMUST00000182325.8	463	5	5332	-690	5167	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACAAATGTGAGGGTTATT	NA	NA	NA	NA	NA	NA	NA	NA	61880904	61840482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_61841256_61869885_61869933_61872973_61873041_61880808
ONT_simulated_read_18463584	chr11	+	1810	19	ISM	ENSMUSG00000001506.11	ENSMUST00000001547.8	5930	51	9144	2490	9144	-2490	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACTCTGACTGGAAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	94836193	94841378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_94836239_94836325_94836425_94836636_94836745_94837100_94837209_94837399_94837454_94837601_94837656_94837899_94838008_94838095_94838150_94838259_94838314_94838443_94838606_94838708_94838817_94839157_94839266_94839368_94839423_94839531_94839640_94840006_94840061_94840181_94840290_94840545_94840600_94840922_94841031_94841116
ONT_simulated_read_1846590	chr2	-	510	2	ISM	ENSMUSG00000026753.6	ENSMUST00000204701.3	1495	6	26467	494	26467	-494	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTTATTGAGCACTTTG	NA	NA	NA	NA	NA	NA	NA	NA	39089865	39087282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_39087602_39089674
ONT_simulated_read_18467181	chr8	-	753	3	ISM	ENSMUSG00000031660.14	ENST00000394689.2	2141	17	28109	-263	28109	263	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTGACTTTTTATTATTA	NA	NA	NA	NA	NA	NA	NA	NA	89060478	89058675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_89059172_89059508_89059653_89060365
ONT_simulated_read_18470818	chr9	+	757	1	ISM	ENSMUSG00000032086.13	ENSMUST00000078111.11	4041	8	22083	1065	6037	-806	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTGCCCAGTGGTACA	NA	NA	NA	NA	NA	NA	NA	NA	45771960	45772717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_45772000_45772700
ONT_simulated_read_18472898	chr14	+	3722	18	ISM	ENSMUSG00000021806.5	ENSMUST00000022340.5	4876	21	16972	284	16972	-284	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACTAAATCTGATTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	19818304	19861571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
ONT_simulated_read_18476739	chr2	+	461	3	ISM	ENSMUSG00000027394.14	ENSMUST00000035812.14	4567	7	43	20365	43	-20365	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATCCAACTAACCTCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	128907904	128917838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_128908224_128910774_128910854_128917775
ONT_simulated_read_18479015	chr11	-	451	4	ISM	ENSMUSG00000034449.8	ENSMUST00000047560.8	1254	7	6560	248	6560	-248	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGGGCCGGGAAGAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	84713230	84711929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_84712128_84712228_84712295_84712490_84712584_84713136
ONT_simulated_read_18480695	chr5	-	491	1	ISM	ENSMUSG00000004849.15	ENSMUST00000111080.8	1353	5	10371	281	10371	-281	mono-exon	FALSE	NA	NA	NA	NA	NA	519	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGGAGGGGCTTTGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	137064618	137064127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137064100_137064600
ONT_simulated_read_18484057	chr14	-	1424	14	ISM	ENSMUSG00000063142.16	ENSMUST00000163322.3	3162	26	274783	58576	-16986	-58576	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGATTGGCCTCCGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	23578589	23417658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_23417732_23423205_23423330_23436327_23436422_23486017_23486095_23492060_23492148_23501666_23501736_23513168_23513279_23544606_23544763_23551192_23551263_23555241_23555325_23558104_23558211_23559857_23559969_23576603_23576696_23578417
ONT_simulated_read_18484689	chr3	-	1339	12	ISM	ENSMUSG00000027709.10	ENSMUST00000029259.10	2455	19	15585	246	8922	-246	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGAGCCCAAGCCAACAG	NA	NA	NA	NA	NA	NA	NA	NA	36039242	36014227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_36014279_36015081_36015154_36017733_36017842_36018475_36018614_36022572_36022623_36026626_36026714_36028222_36028440_36029943_36030054_36030809_36030994_36033071_36033200_36037881_36037964_36039130
ONT_simulated_read_18485150	chr18	-	1637	14	ISM	ENSMUSG00000024566.11	ENST00000307671.12	3290	28	151947	0	151947	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGGGGCATGAGGCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	80809148	80779229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_80779365_80781867_80782072_80782961_80783020_80793033_80793143_80795972_80796038_80796206_80796363_80797163_80797229_80797459_80797605_80799668_80799759_80801509_80801609_80805276_80805448_80806088_80806173_80808237_80808331_80808985
ONT_simulated_read_18492367	chr3	-	952	1	ISM	ENSMUSG00000027860.16	ENSMUST00000029453.13	6531	8	46234	3925	38437	-423	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACCACAGCTGTACATGG	NA	NA	NA	NA	NA	NA	NA	NA	102065775	102064823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_102064800_102065800
ONT_simulated_read_18493497	chr12	-	621	1	FSM	ENSMUSG00000106344.3	ENSMUST00000197752.3	80	1	0	-541	0	541	mono-exon	FALSE	NA	NA	NA	NA	NA	286	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCTCTTTTATGGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	54692797	54692176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_54692200_54692800
ONT_simulated_read_18493671	chr2	-	1091	7	ISM	ENSMUSG00000038671.16	ENSMUST00000108808.8	1133	8	661	-118	661	118	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACCAGCATGGCCCCTAG	NA	NA	NA	NA	NA	NA	NA	NA	181006483	181000774	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397
ONT_simulated_read_1849415	chr6	+	351	4	ISM	ENSMUSG00000056737.15	ENSMUST00000114072.8	1388	11	0	7409	0	-7409	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTTTCTCTGGGGACT	NA	NA	NA	NA	NA	NA	NA	NA	72521519	72532555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_72521650_72521771_72521861_72532255_72532292_72532459
ONT_simulated_read_18494737	chr5	-	491	4	ISM	ENSMUSG00000040473.16	ENST00000497910.5	2292	19	63996	1705	63996	-1705	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGTACCATTTTAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	5643854	5636355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_5636433_5637140_5637279_5639119_5639313_5643771
ONT_simulated_read_18495839	chr11	+	752	5	ISM	ENSMUSG00000018548.16	ENSMUST00000041282.13	5632	24	62997	13881	62997	-13881	internal_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCCGGGCTCTGACACAC	NA	NA	NA	NA	NA	NA	NA	NA	87080899	87097628	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_87080986_87087646_87087842_87092143_87092453_87096758_87096882_87097589
ONT_simulated_read_18496650	chr15	-	1657	1	ISM	ENSMUSG00000044636.7	ENSMUST00000061457.7	4375	5	12794	1468	12794	-1468	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGGTTGTGTGGGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	100380575	100378918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_100378900_100380600
ONT_simulated_read_18497706	chr17	-	762	2	ISM	ENSMUSG00000024190.8	ENSMUST00000236661.2	1587	4	1285	501	1285	-501	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	250	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTGCTGAACTCGGCA	NA	NA	NA	NA	NA	NA	NA	NA	26726161	26725065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_26725625_26725958
ONT_simulated_read_18498033	chr10	-	1335	3	ISM	ENSMUSG00000003348.11	ENSMUST00000003438.11	2682	4	10320	1256	10320	-1256	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTAAAAAAAAATGTAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	80527369	80522342	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80523008_80525685_80525889_80526902
ONT_simulated_read_18498235	chr5	+	572	6	ISM	ENSMUSG00000014668.16	ENSMUST00000198633.5	2623	17	18977	3476	18974	-3476	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGACCTACCAGTATCGT	NA	NA	NA	NA	NA	NA	NA	NA	110302699	110316049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989
ONT_simulated_read_18499778	chr12	-	1048	3	ISM	ENSMUSG00000045679.15	ENSMUST00000222203.2	1706	6	4396	250	4284	-250	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAACTTTGTATAAGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	17045672	17038948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_17039897_17042278_17042321_17045614
ONT_simulated_read_18501564	chrX	+	1284	6	ISM	ENSMUSG00000037369.18	ENST00000536777.6	5630	28	83402	25392	83402	-25392	internal_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAACCTGTGACAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	18112283	18120698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_18112304_18112435_18112656_18114508_18114599_18115991_18116094_18116945_18117342_18120242
ONT_simulated_read_1850320	chr10	+	351	5	ISM	ENSMUSG00000020111.16	ENSMUST00000179709.8	1814	13	38156	75192	38146	-75185	internal_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGGGAACACCCTCAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	59576595	59624760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_59576645_59586325_59586370_59603959_59604075_59623762_59623846_59624700
ONT_simulated_read_18506933	chr12	-	321	1	ISM	ENSMUSG00000021036.11	ENSMUST00000021424.5	6710	12	78335	4642	78335	-4642	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTCTCACACACACACA	NA	NA	NA	NA	NA	NA	NA	NA	87356794	87356473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_87356500_87356800
ONT_simulated_read_18510111	chr9	+	824	4	ISM	ENSMUSG00000032024.11	ENSMUST00000034522.8	4154	7	23	12820	23	-12820	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACACCTGCCACCCAAAT	NA	NA	NA	NA	NA	NA	NA	NA	40597330	40683795	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_40597656_40672196_40672355_40682400_40682603_40683656
ONT_simulated_read_18515312	chr10	+	1805	15	ISM	ENSMUSG00000025369.16	ENSMUST00000105235.10	4032	28	14880	1973	14880	-1973	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACCTTGCCCCCAGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	128310069	128323252	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_128310130_128310240_128310279_128310551_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123
ONT_simulated_read_18515507	chr17	-	781	6	ISM	ENSMUSG00000042625.17	ENSMUST00000075510.12	3277	21	18522	0	18522	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGCTGCCAGGCATT	NA	NA	NA	NA	NA	NA	NA	NA	56873063	56869938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56870244_56870361_56870432_56870511_56870625_56871503_56871635_56872218_56872262_56872944
ONT_simulated_read_18519595	chr9	-	512	1	ISM	ENSMUSG00000064145.13	ENSMUST00000013338.14	3924	16	44257	1670	44257	-1670	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCCGGGGGCCCTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	108482322	108481810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_108481800_108482300
ONT_simulated_read_18520302	chr11	+	1544	4	FSM	ENSMUSG00000078607.7	ENST00000580729.3	1510	4	-34	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGCCAAGTGCAAAAACTA	NA	NA	NA	NA	NA	NA	NA	NA	106916506	106921014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_106916796_106918635_106919095_106919191_106919384_106920410
ONT_simulated_read_18521070	chr4	-	942	1	ISM	ENSMUSG00000040795.13	ENSMUST00000046675.12	2639	5	3032	0	3029	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATGTACAAATATATGTA	NA	NA	NA	NA	NA	NA	NA	NA	129509860	129508918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129508900_129509900
ONT_simulated_read_18522647	chr4	-	1196	1	NIC	ENSMUSG00000050890.16	novel	4674	4	NA	NA	8122	-2919	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCACATGAAGAAAATGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	134006428	134005232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_134005200_134006400
ONT_simulated_read_18523368	chr1	-	759	6	ISM	ENSMUSG00000026313.17	ENSMUST00000008995.15	3937	26	118227	54880	118227	-54880	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTCCGGTCCCAGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	91957888	91915358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_91915380_91919204_91919337_91923778_91923901_91929876_91929998_91940390_91940542_91957676
ONT_simulated_read_1852601	chr2	-	496	4	ISM	ENSMUSG00000036890.14	ENST00000392867.7	2134	7	190265	1065	121151	-1065	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTGCTCACAACAGAACC	NA	NA	NA	NA	NA	NA	NA	NA	44525298	44455498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_44455547_44460430_44460523_44461224_44461296_44525013
ONT_simulated_read_18527161	chr4	-	1277	1	ISM	ENSMUSG00000029007.9	ENSMUST00000030865.9	3996	5	7428	2266	7363	2248	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGCCGGGGCCCAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	148165060	148163783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_148163800_148165100
ONT_simulated_read_185275	chr16	+	1219	9	ISM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	7752	140	7752	-140	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	373	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAATTTTTTGTTTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	20478153	20482024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
ONT_simulated_read_18531711	chr6	+	1170	1	FSM	ENSMUSG00000072704.7	ENSMUST00000100864.7	2842	1	347	1325	0	-1325	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGCGTAAAACGTGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	133082218	133083388	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_133082200_133083400
ONT_simulated_read_18533234	chr4	+	522	3	ISM	ENSMUSG00000029076.15	ENSMUST00000105579.8	1670	8	39	13778	0	-6267	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTCCTGGGAAAGGACAT	NA	NA	NA	NA	NA	NA	NA	NA	156077367	156080889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_156077464_156077609_156077792_156080645
ONT_simulated_read_18533726	chr7	-	1693	7	ISM	ENSMUSG00000003269.18	ENSMUST00000107729.10	2519	12	3344	198	2911	-198	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACTGATCTGGGTAAGG	NA	NA	NA	NA	NA	NA	NA	NA	45460391	45456258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45457273_45457356_45457512_45457599_45457672_45457796_45457874_45459550_45459663_45459994_45460144_45460277
ONT_simulated_read_18534040	chr11	+	422	4	ISM	ENSMUSG00000025583.16	ENSMUST00000026671.13	6594	34	195624	82226	195624	-82226	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCGCTTCCCACAGACCT	NA	NA	NA	NA	NA	NA	NA	NA	119689598	119708007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_119689696_119690147_119690293_119702770_119702847_119707903
ONT_simulated_read_18537996	chr16	+	817	5	ISM	ENSMUSG00000022721.20	ENSMUST00000100099.10	2235	12	3063	0	3063	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	18069988	18071366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ONT_simulated_read_18538295	chr18	-	986	3	ISM	ENSMUSG00000038121.7	ENST00000402563.5	1145	4	23971	-4	23971	4	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	819	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATAGGTTTGGGGGGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	68409338	68401655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_68402024_68405633_68405746_68408832
ONT_simulated_read_18538825	chr18	-	966	10	ISM	ENSMUSG00000024493.10	ENST00000674191.1	3133	28	16661	19131	16661	-19131	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGATGCTAACTTTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	42367787	42354690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645
ONT_simulated_read_1854232	chr1	-	737	2	ISM	ENSMUSG00000030768.13	ENST00000675961.1	4575	6	39521	2947	39521	-2947	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTCCTCTACCGAGTCGT	NA	NA	NA	NA	NA	NA	NA	NA	182877905	182870795	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_182871435_182877807
ONT_simulated_read_18544404	chr11	-	656	5	ISM	ENSMUSG00000039703.16	ENSMUST00000103017.4	4025	16	33342	2054	33277	867	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTCTGGAGCGCCACATG	NA	NA	NA	NA	NA	NA	NA	NA	120295192	120273249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120273453_120274122_120274226_120275368_120275486_120280193_120280266_120295031
ONT_simulated_read_18546414	chr4	-	224	1	ISM	ENSMUSG00000042116.4	ENSMUST00000042196.4	3623	4	4049	2277	2223	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	220	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGAGGGCGCTGTCGGCT	NA	NA	NA	NA	NA	NA	NA	NA	155855106	155854882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_155854900_155855100
ONT_simulated_read_18546943	chr14	-	2784	6	ISM	ENSMUSG00000114378.2	ENSMUST00000225871.2	3124	7	3300	52	3300	-52	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAAAAGGATGGAGACAT	NA	NA	NA	NA	NA	NA	NA	NA	10182487	10145360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_10147633_10162545_10162640_10168516_10168616_10172106_10172182_10173015_10173142_10182369
ONT_simulated_read_18547580	chr6	-	535	2	ISM	ENSMUSG00000025889.14	ENST00000345009.8	975	4	11849	270	11843	-190	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	247	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGAATGACTCTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	60792742	60708752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_60709146_60792600
ONT_simulated_read_18548249	chr18	+	825	1	FSM	ENSMUSG00000078240.3	ENSMUST00000105038.3	1656	1	0	831	0	-831	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAGAGCTGAGCAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	34869411	34870236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_34869400_34870200
ONT_simulated_read_1854864	chr12	+	764	7	ISM	ENSMUSG00000042472.12	ENST00000324593.10	2245	11	10376	674	-2361	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGTTGTCTGATCCCA	NA	NA	NA	NA	NA	NA	NA	NA	84374213	84389824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84386875_84387004_84389768
ONT_simulated_read_1854869	chr13	-	1281	4	ISM	ENSMUSG00000025871.19	ENSMUST00000153065.8	2502	8	8652	686	2670	-686	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	242	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAATTTTAACATGACATT	NA	NA	NA	NA	NA	NA	NA	NA	54704464	54699721	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339
ONT_simulated_read_1854886	chr5	+	793	7	ISM	ENSMUSG00000029017.14	ENSMUST00000030882.12	1615	13	0	11155	0	-11155	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAGTTAGCAAAGTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	21942138	21950995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_21942275_21943866_21944008_21945037_21945125_21945482_21945613_21947755_21947955_21948376_21948457_21950975
ONT_simulated_read_18549258	chr11	-	447	1	NIC	ENSMUSG00000017561.17	novel	2230	7	NA	NA	33200	-799	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAGTACAAATATCAAACT	NA	NA	NA	NA	NA	NA	NA	NA	79938564	79938117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_79938100_79938600
ONT_simulated_read_18549322	chr7	-	397	1	NIC	ENSMUSG00000030493.14	novel	1857	4	NA	NA	3616	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTCTGGGCAGCCACC	NA	NA	NA	NA	NA	NA	NA	NA	35092517	35092120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_35092100_35092500
ONT_simulated_read_18551521	chr11	-	420	1	ISM	ENSMUSG00000041278.11	ENSMUST00000048578.3	1438	8	17401	153	9250	-141	mono-exon	FALSE	NA	NA	NA	NA	NA	342	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTAACCATGCAAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	43621408	43620988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_43621000_43621400
ONT_simulated_read_18551585	chr2	+	1896	5	ISM	ENSMUSG00000027439.10	ENSMUST00000028928.8	4232	6	3589	1125	3589	-1125	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTAGCTAGGTACATTT	NA	NA	NA	NA	NA	NA	NA	NA	148526531	148533744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_148526889_148528433_148528529_148529923_148530092_148531995_148532154_148532626
ONT_simulated_read_18552867	chr16	-	2018	5	ISM	ENSMUSG00000022772.13	ENSMUST00000023457.13	3370	10	25455	-684	25455	684	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGACACAGGCACAGGGT	NA	NA	NA	NA	NA	NA	NA	NA	31796526	31780639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_31782356_31783087_31783139_31784562_31784647_31787617_31787756_31796497
ONT_simulated_read_18554639	chr1	+	923	6	ISM	ENSMUSG00000042581.15	ENST00000413152.3	5788	26	17908	458884	17908	-289961	internal_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCTCAATGTGACCATT	NA	NA	NA	NA	NA	NA	NA	NA	129541011	129688128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_129541096_129556613_129556784_129595550_129595707_129605785_129605984_129686182_129686375_129688005
ONT_simulated_read_18555000	chr8	-	283	3	ISM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	6822	3749	6822	-3749	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAACCGAGTGTTCTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	108144859	108142869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_108142883_108143625_108143724_108144687
ONT_simulated_read_18555066	chr7	+	1534	6	ISM	ENSMUSG00000049643.16	ENSMUST00000187032.2	1871	9	5182	-5	5182	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	NA	NA	NA	NA	NA	NA	NA	NA	27265082	27281524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761_27280117_27280775
ONT_simulated_read_18557503	chr8	-	1035	1	FSM	ENSMUSG00000083734.2	ENSMUST00000118457.2	627	1	0	-408	0	408	mono-exon	FALSE	NA	NA	NA	NA	NA	549	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGATGGCAACCCGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	107764738	107763703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_107763700_107764700
ONT_simulated_read_1856066	chr7	-	917	7	ISM	ENSMUSG00000030605.16	ENSMUST00000032825.14	2125	10	3711	995	3704	-995	internal_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCAGGGGGCCCGTGACT	NA	NA	NA	NA	NA	NA	NA	NA	78795097	78784511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78793025_78793137_78794994
ONT_simulated_read_18562352	chr16	-	1406	11	ISM	ENSMUSG00000022899.11	ENSMUST00000165531.9	2158	21	24724	-225	24724	225	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTAAATATTAGGCAATGT	NA	NA	NA	NA	NA	NA	NA	NA	36580458	36571914	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_36572317_36572633_36572739_36573354_36573502_36574057_36574155_36574803_36574915_36576411_36576459_36576586_36576752_36577483_36577619_36578141_36578224_36579587_36579677_36580432
ONT_simulated_read_18569982	chr7	-	601	5	ISM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	12977	9028	12977	-9028	internal_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGGACACGGAAGCCCAT	NA	NA	NA	NA	NA	NA	NA	NA	126600816	126595059	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126595145_126595409_126595505_126597397_126597530_126597644_126597769_126600651
ONT_simulated_read_18573502	chr7	-	329	1	NIC	ENSMUSG00000005447.13	novel	689	5	NA	NA	1935	0	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTTCTGCTTTATG	NA	NA	NA	NA	NA	NA	NA	NA	24994802	24994473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_24994500_24994800
ONT_simulated_read_18574515	chr11	-	1214	5	ISM	ENSMUSG00000045374.19	ENSMUST00000173320.8	6908	10	6475	3399	6475	-3391	internal_fragment	TRUE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGGGCTTCATGGTGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	75339068	75335168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_75335261_75335523_75335670_75336229_75336920_75338689_75338856_75338948
ONT_simulated_read_18574743	chrX	+	653	4	ISM	ENSMUSG00000031148.15	ENSMUST00000049896.13	3579	11	0	8098	0	-8098	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTCAGTGAGTTTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	7563369	7568403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_7563635_7564731_7564893_7564994_7565120_7568301
ONT_simulated_read_18576677	chr14	+	542	6	FSM	ENSMUSG00000022210.8	ENST00000558263.5	728	6	-17	203	-12	-192	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCAGTTACATCAATGGAG	NA	NA	NA	NA	NA	NA	NA	NA	55716390	55727329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724716_55724769_55725616_55725673_55727275
ONT_simulated_read_18576683	chr12	+	735	6	ISM	ENSMUSG00000019969.15	ENSMUST00000101225.2	3023	12	36076	1106	25074	22	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTCTTCTTTGATTATC	NA	NA	NA	NA	NA	NA	NA	NA	83771412	83780867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_83771491_83774999_83775099_83775471_83775559_83777312_83777487_83778447_83778567_83780689
ONT_simulated_read_18576804	chr10	-	336	1	ISM	ENSMUSG00000019873.9	ENSMUST00000020023.9	5430	8	83193	4228	83094	-1745	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGTCTCTGCTCCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	66849531	66849195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_66849200_66849500
ONT_simulated_read_18580345	chr4	-	859	1	ISM	ENSMUSG00000028228.6	ENSMUST00000029885.5	5648	16	46818	3178	46818	-3178	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAAAGCTTTGAGGACCAA	NA	NA	NA	NA	NA	NA	NA	NA	19523290	19522431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_19522400_19523300
ONT_simulated_read_18580704	chr15	+	835	6	ISM	ENSMUSG00000033287.17	ENST00000403888.7	1329	9	5325	15	4292	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTTGTTGTGAGAATCA	NA	NA	NA	NA	NA	NA	NA	NA	78318181	78323109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_78318211_78319784_78319911_78321100_78321195_78321357_78321433_78321783_78321872_78322686
ONT_simulated_read_18581810	chr3	+	397	2	ISM	ENSMUSG00000034640.10	ENSMUST00000047906.10	4191	6	50	24071	50	-24071	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTTTGCTAGAATCTGG	NA	NA	NA	NA	NA	NA	NA	NA	65435880	65438868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_65436054_65438644
ONT_simulated_read_18582650	chr9	-	1286	7	ISM	ENSMUSG00000032175.12	ENSMUST00000214454.2	4770	25	2536	16513	-1361	2876	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGACTTCCAGGACATT	NA	NA	NA	NA	NA	NA	NA	NA	21040003	21031878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21032000_21032687_21033055_21035272_21035437_21035706_21035855_21036159_21036278_21038419_21038640_21039855
ONT_simulated_read_18583128	chr2	-	809	10	ISM	ENSMUSG00000074643.13	ENST00000352393.8	1940	18	33318	436	33310	-436	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGTGATCATCGTGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	155920511	155915863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493
ONT_simulated_read_18589627	chr4	+	1848	8	ISM	ENSMUSG00000041235.13	ENSMUST00000039267.10	9444	38	164310	810	103793	-810	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCTGCCACCGCCGGAG	NA	NA	NA	NA	NA	NA	NA	NA	8855230	8866000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_8855515_8856670_8856832_8858478_8858707_8859042_8859487_8862489_8862712_8863908_8864050_8864200_8864306_8865737
ONT_simulated_read_18592916	chr4	-	902	7	ISM	ENSMUSG00000029036.19	ENSMUST00000030903.12	2413	16	10495	461	10495	-461	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTAAGAGGTCAACATTGC	NA	NA	NA	NA	NA	NA	NA	NA	155835055	155825558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929
ONT_simulated_read_18594280	chr18	+	1898	9	ISM	ENSMUSG00000024498.17	ENSMUST00000025375.15	4101	21	41881	238	41872	-238	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTATGAACCACATTCATAA	NA	NA	NA	NA	NA	NA	NA	NA	42686446	42708381	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
ONT_simulated_read_18594786	chr16	-	545	1	ISM	ENSMUSG00000022538.21	ENSMUST00000117363.9	3180	14	25752	802	25752	-802	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGATGGCTCAGCAGTTAG	NA	NA	NA	NA	NA	NA	NA	NA	30380658	30380113	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_30380100_30380700
ONT_simulated_read_18598415	chr3	+	1364	1	ISM	ENSMUSG00000027806.10	ENSMUST00000099090.7	9799	4	5	50700	0	-45637	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCGAGTAGTGCAACTC	NA	NA	NA	NA	NA	NA	NA	NA	58322140	58323504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_58322100_58323500
ONT_simulated_read_18599026	chrX	-	1232	1	ISM	ENSMUSG00000039201.11	ENSMUST00000239441.2	2648	6	20115	363	19825	-344	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACCGCCTGGTTCGTA	NA	NA	NA	NA	NA	NA	NA	NA	8022305	8021073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_8021100_8022300
ONT_simulated_read_18600532	chr13	+	439	8	ISM	ENSMUSG00000003992.16	ENST00000401636.1	891	14	209250	0	209250	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTAATGCTGTAGTACA	NA	NA	NA	NA	NA	NA	NA	NA	91818555	91841178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_91818584_91823152_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149
ONT_simulated_read_18600953	chr18	-	912	6	ISM	ENSMUSG00000024501.21	ENSMUST00000118043.8	1986	14	39269	61	39269	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAGCCAAAATGGTACAC	NA	NA	NA	NA	NA	NA	NA	NA	43467068	43457352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_43457486_43458789_43458953_43461389_43461570_43462755_43462927_43465936_43466079_43466945
ONT_simulated_read_18601488	chr3	-	749	8	ISM	ENSMUSG00000062908.13	ENSMUST00000072697.13	2047	12	2661	7931	2661	-7368	internal_fragment	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTGTTAATCGGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	153647608	153635924	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519
ONT_simulated_read_18601776	chr2	-	2271	7	ISM	ENSMUSG00000039449.15	ENSMUST00000035721.14	3522	10	8333	886	-6534	-886	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGACTTACTTGACAAAG	NA	NA	NA	NA	NA	NA	NA	NA	4648564	4627754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_4629338_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4642028_4643659_4643807_4648461
ONT_simulated_read_18604581	chr17	-	884	1	FSM	ENSMUSG00000068141.6	ENSMUST00000089221.3	720	1	0	-164	0	164	mono-exon	FALSE	NA	NA	NA	NA	NA	580	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTCTCTCTATACCTG	NA	NA	NA	NA	NA	NA	NA	NA	3095008	3094124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_3094100_3095000
ONT_simulated_read_18608643	chr4	+	833	7	ISM	ENSMUSG00000046861.10	ENST00000372168.7	1866	13	10	2827	10	-2827	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGAAGCAGCTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	116855733	116858037	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_116856023_116856774_116856958_116857085_116857139_116857285_116857351_116857443_116857548_116857793_116857914_116858018
ONT_simulated_read_18613169	chr3	-	1503	1	ISM	ENSMUSG00000028134.12	ENST00000676292.1	3469	12	41323	522	27499	39	mono-exon	FALSE	NA	NA	NA	NA	NA	689	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTGCTTACCTCTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	119514106	119512603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_119512600_119514100
ONT_simulated_read_18613630	chr3	+	709	5	ISM	ENSMUSG00000028049.16	ENST00000355379.3	1472	8	82	1871	6	-1867	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGGTGATGGAAGGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	89084802	89088203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89084965_89086401_89086531_89086623_89086745_89087558_89087688_89088035
ONT_simulated_read_18614836	chr13	-	281	1	FSM	ENSMUSG00000069310.5	ENSMUST00000091752.5	630	1	0	349	0	-349	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGCTGCTGATCCGCAAGC	NA	NA	NA	NA	NA	NA	NA	NA	23929585	23929304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_23929300_23929600
ONT_simulated_read_18617215	chr5	+	506	4	ISM	ENSMUSG00000028962.15	ENSMUST00000115047.3	4264	22	11481	201	11481	-201	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTAGCTGCTGTCCAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	24644901	24645744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_24644989_24645078_24645249_24645401_24645576_24645669
ONT_simulated_read_18619970	chr7	-	1102	9	NIC	ENSMUSG00000003438.18	novel	1515	11	NA	NA	1043	6	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGGGCTGGGTGCCATG	NA	NA	NA	NA	NA	NA	NA	NA	28010430	28005169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009720_28009753_28010293
ONT_simulated_read_18620089	chr8	+	863	5	ISM	ENSMUSG00000031770.17	ENST00000379792.6	1761	7	4258	541	4258	-541	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCTTTTCCTCCCCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	95117417	95121442	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_95117477_95118359_95118483_95118801_95119153_95120423_95120530_95121218
ONT_simulated_read_18620253	chr8	-	898	1	ISM	ENSMUSG00000040028.11	ENSMUST00000098950.6	5743	6	35505	3629	22711	-668	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATAGTGTTGGGAGCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	4339908	4339010	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_4339000_4339900
ONT_simulated_read_18621296	chr13	-	1365	1	ISM	ENSMUSG00000094870.9	ENSMUST00000177916.8	3067	7	23807	447	23289	158	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATTTTTTCATTTAACG	NA	NA	NA	NA	NA	NA	NA	NA	120228534	120227169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_120227200_120228500
ONT_simulated_read_1862335	chr7	-	344	3	ISM	ENSMUSG00000003872.10	ENST00000391864.7	544	5	616	0	597	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	521	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGAGTGTCTTGTGTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	45019410	45017314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45017423_45017727_45017892_45019338
ONT_simulated_read_18623549	chr1	+	198	1	FSM	ENSMUSG00000081382.2	ENSMUST00000121555.2	525	1	0	327	0	-327	mono-exon	FALSE	NA	NA	NA	NA	NA	4652	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTGAGAAATCACCCCT	NA	NA	NA	NA	NA	NA	NA	NA	60940056	60940254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_60940100_60940300
ONT_simulated_read_18625653	chrX	-	985	6	ISM	ENSMUSG00000031167.17	ENSMUST00000115616.8	1225	7	701	104	607	-104	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGTGAATGTCATTTT	NA	NA	NA	NA	NA	NA	NA	NA	8011311	8008710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_8009195_8009489_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193
ONT_simulated_read_18626377	chr7	+	767	4	ISM	ENSMUSG00000011096.18	ENSMUST00000107880.9	1757	5	35	1438	35	-753	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGCCCCCGGCCACAGCC	NA	NA	NA	NA	NA	NA	NA	NA	44499465	44503407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_44499721_44501994_44502384_44503203_44503282_44503362
ONT_simulated_read_18627560	chr16	-	895	6	ISM	ENSMUSG00000012114.18	ENSMUST00000080936.14	3230	17	25203	21920	25132	-21157	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCTTTGGTGTCACAAGC	NA	NA	NA	NA	NA	NA	NA	NA	17515558	17491004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17491263_17492268_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470
ONT_simulated_read_18629735	chr1	-	256	1	NIC	ENSMUSG00000100954.5	novel	366	2	NA	NA	112	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTTCCTCAACCGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	151220375	151220119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_151220100_151220400
ONT_simulated_read_18630787	chr3	-	839	1	ISM	ENSMUSG00000052539.16	ENSMUST00000064371.14	6640	22	204335	1942	204003	1268	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCTCAGCAAAGCAGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	103923355	103922516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_103922500_103923400
ONT_simulated_read_18632755	chr4	-	4037	18	ISM	ENSMUSG00000045205.17	ENSMUST00000084892.12	6754	19	4985	2551	11	1923	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACCCCCCCAAAAAAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	11317152	11263865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_11265943_11267612_11267772_11273006_11273140_11276863_11276947_11277928_11277986_11281003_11281125_11285053_11285174_11287474_11287634_11289669_11289744_11290190_11290290_11290390_11290523_11292553_11292689_11295935_11296060_11303311_11303458_11303946_11304069_11304299_11304391_11309365_11309491_11317072
ONT_simulated_read_18632869	chr4	+	621	3	ISM	ENSMUSG00000029076.15	ENSMUST00000105578.2	1654	7	0	10823	0	-3204	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACTGCACTTCAGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	156077833	156083952	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_156078027_156080645_156080976_156083854
ONT_simulated_read_18634195	chr2	-	339	3	ISM	ENSMUSG00000035000.9	ENST00000678668.1	3070	23	12007	33352	12007	-33352	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTGATGGCTATCTGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	62204855	62195327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_62195408_62203098_62203212_62204709
ONT_simulated_read_18635614	chr1	-	1406	10	ISM	ENSMUSG00000026014.16	ENST00000439222.5	1854	13	7305	1957	7305	-1957	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACAGAGTCCGCTTATG	NA	NA	NA	NA	NA	NA	NA	NA	60565260	60534653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_60534695_60535383_60535483_60537582_60537694_60538638_60538783_60539713_60539780_60540914_60541037_60541983_60542144_60542676_60542755_60549575_60549651_60564750
ONT_simulated_read_18639337	chr1	-	237	1	Antisense	novelGene_ENSMUSG00000026156.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	197	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTGCCACACGAGAACCT	NA	NA	NA	NA	NA	NA	NA	NA	23884436	23884199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr1_-_23884200_23884400
ONT_simulated_read_18640407	chr16	+	478	4	ISM	ENSMUSG00000040666.20	ENSMUST00000233945.2	1121	8	19828	227	19828	-220	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGCGTACGCTGCCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	96021698	96029908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_96021792_96025000_96025082_96025673_96025792_96029722
ONT_simulated_read_186419	chr1	-	1124	9	ISM	ENSMUSG00000062729.13	ENSMUST00000073120.11	1821	13	1222	0	1088	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	NA	NA	NA	NA	NA	NA	NA	NA	171107538	171104564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107149_171107442
ONT_simulated_read_18642895	chr11	-	677	4	ISM	ENSMUSG00000041189.10	ENSMUST00000045971.9	2155	11	2340	1740	2340	-1740	internal_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCAGAGGAACTGATGAAT	NA	NA	NA	NA	NA	NA	NA	NA	69684429	69676601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69676706_69677706_69677931_69683524_69683735_69684290
ONT_simulated_read_18643228	chr2	-	897	1	ISM	ENSMUSG00000027082.16	ENSMUST00000111711.8	3968	8	33848	1864	30884	-1281	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACAGATCCTTTTACAAG	NA	NA	NA	NA	NA	NA	NA	NA	84273244	84272347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_84272300_84273200
ONT_simulated_read_18646104	chr11	+	623	6	FSM	ENSMUSG00000034708.13	ENST00000639447.1	796	6	-6	179	-6	-179	multi-exon	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACACCTGCAATGTGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	102324757	102326890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326849
ONT_simulated_read_1864630	chr7	-	273	1	ISM	ENSMUSG00000059772.13	ENSMUST00000144897.2	3152	6	4137	1907	4137	-1907	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGGAGGAGGGGGCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	126290819	126290546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126290500_126290800
ONT_simulated_read_18651029	chr9	+	673	3	NIC	ENSMUSG00000096519.2	novel	669	4	NA	NA	0	0	intron_retention	FALSE	non_canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTCCATGTCCCACAGT	NA	NA	NA	NA	NA	NA	NA	NA	3013139	3014344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_3013538_3014004_3014157_3014221
ONT_simulated_read_18652895	chr4	-	637	4	ISM	ENSMUSG00000028411.16	ENST00000379813.7	940	6	2240	96	2240	-96	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTGAGCTCTTGAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	40695107	40686663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_40686714_40688108_40688213_40690968_40691196_40694851
ONT_simulated_read_18653386	chr8	+	3163	14	NIC	ENSMUSG00000071064.16	novel	3150	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGACAGGAACAGACAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	79755215	79917150	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_+_79755359_79796999_79797173_79802686_79803168_79818461_79818696_79844803_79845044_79847111_79847170_79863188_79863293_79902461_79902600_79905536_79905709_79906673_79906841_79912226_79912419_79912804_79912983_79914782_79914811_79916295
ONT_simulated_read_18653826	chr6	-	1558	8	ISM	ENSMUSG00000033769.17	ENSMUST00000160197.6	5439	22	217602	2284	217494	590	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGGGTCAGGACTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	84828893	84597752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_84598494_84602106_84602220_84723882_84723957_84768222_84768365_84812022_84812203_84820990_84821126_84825747_84825860_84828832
ONT_simulated_read_18653882	chr4	-	771	4	ISM	ENSMUSG00000040520.8	ENSMUST00000041374.8	4867	5	6274	3420	380	-293	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	403	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACCCGGAACAGAGTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	26340617	26327925	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_26328309_26329085_26329163_26336620_26336731_26340416
ONT_simulated_read_18654673	chr4	-	1099	4	ISM	ENSMUSG00000040761.17	ENSMUST00000078886.10	12082	15	16099	25531	16099	-25531	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGACTGCATGGGTAGG	NA	NA	NA	NA	NA	NA	NA	NA	141249661	141220731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_141220908_141221548_141221710_141244146_141244630_141249382
ONT_simulated_read_18655382	chr12	-	1358	1	NIC	ENSMUSG00000020659.17	novel	3937	6	NA	NA	11240	-57	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTGATGCATTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	31538314	31536956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_31537000_31538300
ONT_simulated_read_18656471	chr9	-	747	1	NIC	ENSMUSG00000066456.15	novel	855	7	NA	NA	35630	-146	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGAATTTTTTCATGCA	NA	NA	NA	NA	NA	NA	NA	NA	82992893	82992146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_82992100_82992900
ONT_simulated_read_1866242	chr12	+	387	3	ISM	ENSMUSG00000018707.14	ENST00000644881.2	14073	77	63478	757	63478	-757	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGAGGAACTCTGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	110631514	110632479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_110631671_110632097_110632241_110632391
ONT_simulated_read_18664227	chr5	-	1115	1	ISM	ENSMUSG00000035898.14	ENSMUST00000039373.14	6590	33	60057	2345	59765	710	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTATGATATAATTGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	86260605	86259490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_86259500_86260600
ONT_simulated_read_1866464	chr15	-	1646	12	ISM	ENSMUSG00000037458.16	ENST00000683787.1	4228	13	4722	2159	4693	-795	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCTTGTATTCAGCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	38514814	38490655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_38490717_38491719_38491935_38492487_38492601_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38507430_38507591_38514716
ONT_simulated_read_18664842	chr16	+	1017	10	NNC	ENSMUSG00000022957.21	novel	3898	29	NA	NA	0	-16888	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATTGATGTTGCCATGTC	NA	NA	NA	NA	NA	NA	NA	NA	91526240	91612353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr16_+_91526488_91579048_91579109_91580950_91581044_91582175_91582240_91590494_91590656_91598525_91598595_91599925_91600020_91602980_91603082_91608977_91609042_91612289
ONT_simulated_read_18665692	chr3	-	1506	1	ISM	ENSMUSG00000032913.14	ENSMUST00000046316.11	7099	18	53899	2456	53887	692	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTATTTATAAGTAACTGT	NA	NA	NA	NA	NA	NA	NA	NA	104365257	104363751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_104363800_104365300
ONT_simulated_read_18666903	chr2	-	1061	1	ISM	ENSMUSG00000073236.5	ENSMUST00000128026.2	1898	2	2946	647	2946	-647	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATTCTACTCTTTAGTC	NA	NA	NA	NA	NA	NA	NA	NA	153184784	153183723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_153183700_153184800
ONT_simulated_read_18667540	chr14	-	699	1	ISM	ENSMUSG00000021884.19	ENSMUST00000022437.16	2644	17	32940	127	32854	-127	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCCTTCAGCTTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	31329981	31329282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_31329300_31330000
ONT_simulated_read_18668189	chr11	+	742	1	ISM	ENSMUSG00000057098.15	ENSMUST00000109268.2	2864	16	0	386937	0	-386937	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCATCGACTCAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	44508143	44508885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_44508100_44508900
ONT_simulated_read_18668992	chr17	-	3494	7	NIC	ENSMUSG00000052105.18	novel	5441	16	NA	NA	71851	-187	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	162	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAGACAATGGCTCCATT	NA	NA	NA	NA	NA	NA	NA	NA	66673537	66644177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_66645150_66647478_66647536_66649820_66651361_66655213_66655517_66661117_66661373_66665016_66665185_66673338
ONT_simulated_read_18670927	chr2	-	1025	1	FSM	ENSMUSG00000079043.4	ENSMUST00000179273.2	2424	1	0	1399	0	-1399	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGCAAAGACTAGAATCAC	NA	NA	NA	NA	NA	NA	NA	NA	130458588	130457563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_130457600_130458600
ONT_simulated_read_18672931	chr18	+	1226	6	ISM	ENSMUSG00000060450.15	ENSMUST00000170811.8	2886	8	71	4598	6	-132	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGAAGCTACTAAGAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	38429758	38446302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_38429852_38432806_38432980_38433481_38433644_38440917_38441449_38442537_38442767_38446264
ONT_simulated_read_18673001	chr10	-	2549	19	ISM	ENSMUSG00000019979.13	ENST00000547045.5	3737	25	12798	8406	12798	-8286	internal_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTCATCAGGGCACAG	NA	NA	NA	NA	NA	NA	NA	NA	90903088	90835601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_90835640_90836871_90836992_90844985_90845112_90849921_90850039_90854827_90854948_90856517_90856644_90867410_90867573_90872771_90872898_90875646_90875779_90883947_90884074_90885219_90885347_90890241_90890427_90891776_90891891_90894172_90894305_90895434_90895603_90895909_90896149_90897559_90897692_90897965_90898079_90902942
ONT_simulated_read_18674484	chr5	-	973	1	NIC	ENSMUSG00000051391.10	novel	1610	3	NA	NA	22936	-2237	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGTTCCAGTAAGGATT	NA	NA	NA	NA	NA	NA	NA	NA	135940472	135939499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_135939500_135940500
ONT_simulated_read_18674828	chr13	-	977	10	ISM	ENSMUSG00000021552.8	ENSMUST00000091579.6	1523	12	10867	153	10867	-153	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTCACTCATAGTCTACA	NA	NA	NA	NA	NA	NA	NA	NA	58411135	58381312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58389467_58389570_58391615_58391769_58398944_58398968_58403560_58403685_58407247_58407326_58411011
ONT_simulated_read_18675078	chr9	-	1858	1	ISM	ENSMUSG00000050730.18	ENSMUST00000093893.12	6116	23	241435	1484	241124	1143	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCTATGATTTTAAATGAA	NA	NA	NA	NA	NA	NA	NA	NA	8997671	8995813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_8995800_8997700
ONT_simulated_read_18680330	chr8	-	2243	14	ISM	ENSMUSG00000031834.16	ENSMUST00000034296.15	3165	16	1360	980	1360	-980	internal_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACACAGGCGGAGGAGATG	NA	NA	NA	NA	NA	NA	NA	NA	71227997	71221799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71221877_71221991_71222064_71222232_71222410_71222548_71222692_71223020_71223147_71223227_71223409_71223490_71223590_71223697_71223807_71223932_71224019_71224476_71224676_71224776_71224909_71224995_71225047_71225246_71225340_71227299
ONT_simulated_read_18681468	chr2	-	517	4	ISM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	11736	7810	11289	-7810	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAAGAGCAGATCCGGC	NA	NA	NA	NA	NA	NA	NA	NA	5005866	5003344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_5003454_5003540_5003652_5004490_5004592_5005670
ONT_simulated_read_18682984	chr11	-	1040	3	ISM	ENSMUSG00000017400.11	ENSMUST00000017544.9	3050	11	13313	598	13313	-598	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGGACTCCAGAAATCCCT	NA	NA	NA	NA	NA	NA	NA	NA	97930975	97928046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97928897_97930444_97930583_97930923
ONT_simulated_read_18683219	chr2	+	755	5	FSM	ENSMUSG00000027482.13	ENST00000375452.3	765	5	-7	17	0	-17	multi-exon	FALSE	canonical	NA	NA	NA	NA	638	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGCTGAAAGGCCTAGT	NA	NA	NA	NA	NA	NA	NA	NA	153972255	153979539	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_153972583_153975558_153975710_153978185_153978336_153979034_153979120_153979497
ONT_simulated_read_1868577	chr7	-	358	4	ISM	ENSMUSG00000003099.12	ENST00000391919.1	1878	12	17816	2552	17816	-2552	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGGCGAGGTGAAGGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	16743911	16741130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_16741172_16741650_16741757_16742538_16742638_16743799
ONT_simulated_read_18686339	chr7	-	474	4	ISM	ENSMUSG00000006335.17	ENSMUST00000155592.8	1091	6	5240	0	4443	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	NA	NA	NA	NA	NA	NA	NA	3627643	3623322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_3623474_3623775_3623983_3624061_3624132_3627597
ONT_simulated_read_18688714	chr2	-	228	1	FSM	ENSMUSG00000102869.3	ENSMUST00000192863.3	4915	1	0	4687	0	-4687	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATGGCGGCGGCCTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	156234899	156234671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_156234700_156234900
ONT_simulated_read_1869032	chr2	-	956	5	ISM	ENSMUSG00000026873.10	ENSMUST00000028232.7	3741	15	14231	1782	14231	-1782	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGTATTCTCTCGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	34789757	34785550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_34786074_34787068_34787165_34788085_34788172_34788935_34789024_34789594
ONT_simulated_read_18691197	chr10	+	1101	8	ISM	ENSMUSG00000019978.17	ENST00000530481.5	3748	17	42706	1096	-6503	-290	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTAAAATGCCAACAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	25360178	25398321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_25360279_25364848_25364992_25377721_25378037_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388984_25398194
ONT_simulated_read_18691587	chr9	-	580	1	ISM	ENSMUSG00000032353.10	ENSMUST00000058488.9	1346	3	5114	169	5114	-169	mono-exon	FALSE	NA	NA	NA	NA	NA	468	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTCTTGCCTTCCCTTCG	NA	NA	NA	NA	NA	NA	NA	NA	89582007	89581427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_89581400_89582000
ONT_simulated_read_18691998	chr8	-	802	1	NIC	ENSMUSG00000014470.5	novel	1783	6	NA	NA	8829	-287	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAGAAACCCTAGCACCG	NA	NA	NA	NA	NA	NA	NA	NA	123193974	123193172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_123193200_123194000
ONT_simulated_read_18693879	chr1	-	848	10	ISM	ENSMUSG00000026200.14	ENST00000409640.5	1617	13	845	602	845	-602	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCACTGAGTGGATGATG	NA	NA	NA	NA	NA	NA	NA	NA	75185024	75176736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_75176771_75176973_75177106_75177587_75177702_75177841_75177932_75178042_75178118_75178386_75178506_75178693_75178735_75178830_75178953_75179051_75179111_75184962
ONT_simulated_read_18694955	chr2	+	148	2	ISM	ENSMUSG00000027575.20	ENSMUST00000029092.13	2714	14	33	14840	-10	-13684	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTACGTGGCCCCTCAGC	NA	NA	NA	NA	NA	NA	NA	NA	180609059	180609479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_180609123_180609394
ONT_simulated_read_1869702	chr4	-	1000	3	ISM	ENSMUSG00000043962.17	ENST00000469141.6	3074	11	4	14770	4	-7201	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGGCTCTGGGTCTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	126088184	126073836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126074608_126080227_126080382_126088109
ONT_simulated_read_18697172	chr2	-	411	1	FSM	ENSMUSG00000081010.4	ENSMUST00000118421.2	474	1	0	63	0	-63	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTAACAGCTGAAGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	103649821	103649410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_103649400_103649800
ONT_simulated_read_18700025	chr12	+	203	1	FSM	ENSMUSG00000101814.2	ENSMUST00000186869.2	298	1	0	95	0	-95	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAACACCATGAAAATGA	NA	NA	NA	NA	NA	NA	NA	NA	116560872	116561075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_116560900_116561100
ONT_simulated_read_1870079	chr13	-	492	1	ISM	ENSMUSG00000035834.12	ENSMUST00000048993.12	3054	8	34940	1739	34872	-1739	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGTAGAGTTATGCTGAT	NA	NA	NA	NA	NA	NA	NA	NA	81824192	81823700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_81823700_81824200
ONT_simulated_read_18700801	chr1	-	1283	5	ISM	ENSMUSG00000016528.11	ENSMUST00000016672.11	2854	10	40897	586	40897	-586	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGAGTAGCCTCTGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	130984666	130982022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_130982973_130983495_130983577_130983665_130983752_130984150_130984276_130984625
ONT_simulated_read_18701224	chrX	-	753	9	ISM	ENSMUSG00000031171.12	ENSMUST00000115595.8	1656	13	3369	329	33	-329	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGATGTCATCTATGGGG	NA	NA	NA	NA	NA	NA	NA	NA	8115265	8106987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111889_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217
ONT_simulated_read_18701539	chr9	+	422	1	ISM	ENSMUSG00000031963.9	ENSMUST00000071982.7	3791	15	210	261493	210	-261204	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCGTCTTGCTGCTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	23134581	23135003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_23134600_23135000
ONT_simulated_read_18703979	chr9	-	494	1	ISM	ENSMUSG00000066892.15	ENSMUST00000131128.2	4182	2	1829	4684	-120	-3670	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCGGGCACTTTCCTAGA	NA	NA	NA	NA	NA	NA	NA	NA	20554222	20553728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_20553700_20554200
ONT_simulated_read_1870546	chr6	-	202	1	ISM	ENSMUSG00000092247.3	ENSMUST00000173657.2	440	2	859	0	859	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGTCGCTGATACCATT	NA	NA	NA	NA	NA	NA	NA	NA	90208911	90208709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_90208700_90208900
ONT_simulated_read_1870730	chr14	-	421	4	ISM	ENSMUSG00000037722.9	ENSMUST00000227468.2	1490	5	738	2781	738	-2625	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTATGTACACGTAACCAT	NA	NA	NA	NA	NA	NA	NA	NA	45622203	45618391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_45618456_45619012_45619141_45620850_45620914_45622037
ONT_simulated_read_1870818	chr15	-	3529	1	ISM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	6506	341	2927	-341	mono-exon	FALSE	NA	NA	NA	NA	NA	2905	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGATATGTGTTGGGAGCC	NA	NA	NA	NA	NA	NA	NA	NA	37001140	36997611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_36997600_37001100
ONT_simulated_read_18708298	chr15	-	2158	14	ISM	ENSMUSG00000022283.16	ENST00000677765.1	2230	15	2247	16	2247	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	393	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGTTATGCTTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	36606182	36595904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987
ONT_simulated_read_18708807	chr17	+	768	6	ISM	ENSMUSG00000024193.9	ENST00000374516.8	2252	15	1	2524	1	-2524	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGCTACTGCTACTGTG	NA	NA	NA	NA	NA	NA	NA	NA	27152310	27154338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_27152509_27153167_27153343_27153427_27153510_27153604_27153701_27154027_27154129_27154222
ONT_simulated_read_18709469	chr1	+	409	6	ISM	ENSMUSG00000038305.16	ENST00000409718.5	2643	13	322	61197	54	-61196	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGGCCAGAGGTGGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	57813577	57924927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_57813651_57838463_57838514_57894622_57894684_57918666_57918776_57921864_57921915_57924861
ONT_simulated_read_18710063	chr1	-	3321	1	ISM	ENSMUSG00000026600.13	ENSMUST00000189661.7	8371	16	43224	3262	35697	2006	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAATTCATTTATGATATG	NA	NA	NA	NA	NA	NA	NA	NA	156258677	156255356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_156255400_156258700
ONT_simulated_read_18715066	chr2	+	683	6	ISM	ENSMUSG00000017861.12	ENST00000217026.5	2604	14	24	15422	0	-15422	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAAAGTCGACACGGGA	NA	NA	NA	NA	NA	NA	NA	NA	162896606	162910116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_162896769_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075
ONT_simulated_read_18715805	chr10	+	459	1	FSM	ENSMUSG00000050490.8	ENSMUST00000079684.7	952	1	0	493	0	-493	mono-exon	FALSE	NA	NA	NA	NA	NA	410	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCAGATCCAGGTGCTAT	NA	NA	NA	NA	NA	NA	NA	NA	85149351	85149810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_85149400_85149800
ONT_simulated_read_18718475	chr4	-	793	7	ISM	ENSMUSG00000028631.8	ENST00000509682.6	1929	13	31814	692	31814	-692	internal_fragment	TRUE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGGAGAAGGGCGATAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	120572559	120555782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_120555826_120557088_120557221_120559582_120559683_120561551_120561773_120570208_120570298_120572181_120572278_120572447
ONT_simulated_read_18719508	chr16	+	477	5	ISM	ENSMUSG00000040666.20	ENSMUST00000171181.9	678	7	33	3969	33	-3969	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTAGTCTCTGCTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	96001903	96021791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_96001949_96007681_96007868_96015212_96015294_96020688_96020761_96021698
ONT_simulated_read_18724989	chr2	+	1029	3	ISM	ENSMUSG00000027628.11	ENSMUST00000109570.8	2766	5	40	16882	28	-16882	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCCGAGATGAGGCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	156389543	156393194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_156389804_156391804_156391948_156392568
ONT_simulated_read_18725756	chr1	+	1323	5	NNC	ENSMUSG00000015222.19	novel	5475	12	NA	NA	34749	-17327	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCCAAGACCTTCCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	66454419	66460839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_+_66455307_66455502_66455710_66455890_66456026_66459296_66459356_66460804
ONT_simulated_read_18727404	chr1	-	1073	1	ISM	ENSMUSG00000026018.13	ENSMUST00000027172.13	3650	11	51906	1041	37048	1015	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCCACAAGGGACATTTTA	NA	NA	NA	NA	NA	NA	NA	NA	60030340	60029267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_60029300_60030300
ONT_simulated_read_18729037	chr11	-	1459	1	FSM	ENSMUSG00000050107.3	ENSMUST00000052140.3	2810	1	0	1351	0	-1351	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTCAATGGGTCCCACCAG	NA	NA	NA	NA	NA	NA	NA	NA	73029120	73027661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_73027700_73029100
ONT_simulated_read_18729798	chr11	-	2368	1	ISM	ENSMUSG00000020436.18	ENSMUST00000070725.11	4041	9	88287	0	87760	0	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGGCACCTCAGTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	41803397	41801029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_41801000_41803400
ONT_simulated_read_18730149	chr2	+	886	9	ISM	ENSMUSG00000027200.18	ENSMUST00000103238.2	3165	17	0	7527	0	-7527	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGCAGTCTATAACAGAC	NA	NA	NA	NA	NA	NA	NA	NA	124495554	124499702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_124495664_124496066_124496179_124496715_124496777_124496897_124496961_124497072_124497175_124497405_124497497_124497929_124498050_124498749_124498839_124499563
ONT_simulated_read_18731781	chr6	-	750	6	ISM	ENSMUSG00000030279.16	ENST00000396028.6	3343	26	16476	55306	16457	-55179	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGGGGGCCCTTTAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	143029036	143012841	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_143012868_143019388_143019514_143023988_143024188_143025594_143025751_143027058_143027155_143028888
ONT_simulated_read_18732053	chr9	+	156	1	FSM	ENSMUSG00000063543.6	ENSMUST00000165252.3	384	1	0	228	0	-228	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTGTGATGGCAGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	48361699	48361855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_48361700_48361900
ONT_simulated_read_1873229	chr10	-	979	9	ISM	ENSMUSG00000042570.15	ENSMUST00000165028.8	2676	14	5520	2379	5412	-2378	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAAGTTTGTCTCCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	79385513	79378457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370
ONT_simulated_read_18733312	chr10	-	648	3	ISM	ENSMUSG00000019763.12	ENSMUST00000042251.11	3139	13	3220	20241	3220	-20241	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTATCACCTGGGAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	4379168	4372155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_4372191_4377170_4377692_4379076
ONT_simulated_read_18734857	chr19	-	2240	2	ISM	ENSMUSG00000006456.11	ENSMUST00000006625.8	3165	3	7635	446	7513	-93	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTCCAAGTAGGTGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	4854027	4851042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4851834_4852578
ONT_simulated_read_18739464	chr9	-	1361	1	ISM	ENSMUSG00000053110.14	ENST00000345877.6	3834	8	69609	1393	69609	807	mono-exon	FALSE	NA	NA	NA	NA	NA	497	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGCCTGCCTTCTGCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	7934708	7933347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_7933300_7934700
ONT_simulated_read_18740340	chr8	-	3119	1	ISM	ENSMUSG00000003316.15	ENSMUST00000169020.8	7021	26	101171	506	101171	-506	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGGGTATTTTAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	111884677	111881558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_111881600_111884700
ONT_simulated_read_18745170	chr9	-	1089	1	ISM	ENSMUSG00000032122.16	ENSMUST00000115068.10	5943	18	24086	2979	23762	-248	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGCATAGCAGCAGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	37142948	37141859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_37141900_37142900
ONT_simulated_read_18746038	chr7	+	1334	11	ISM	ENSMUSG00000004056.16	ENSMUST00000167435.8	2865	15	0	3032	0	-1752	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCGGGCCAGAGGCCAAGT	NA	NA	NA	NA	NA	NA	NA	NA	27291170	27335843	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688
ONT_simulated_read_18746620	chrX	+	597	5	ISM	ENSMUSG00000058254.13	ENSMUST00000076354.13	1733	8	0	10953	0	-10953	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTCTTCCTCCCAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	10351396	10451891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_10351478_10445553_10445743_10448403_10448479_10450280_10450377_10451735
ONT_simulated_read_18747660	chr6	-	769	9	ISM	ENSMUSG00000000399.11	ENSMUST00000088194.7	1238	11	4740	148	4740	-148	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTGGTGTTCAGCCCACA	NA	NA	NA	NA	NA	NA	NA	NA	126821348	126799106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_126799153_126801898_126801966_126804502_126804599_126809434_126809512_126811391_126811460_126813181_126813285_126817460_126817603_126819083_126819176_126821270
ONT_simulated_read_18750943	chr3	-	257	1	NIC	ENSMUSG00000068922.15	novel	2093	15	NA	NA	4060	0	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACGCATTTGTACATTTA	NA	NA	NA	NA	NA	NA	NA	NA	88817178	88816921	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_88816900_88817200
ONT_simulated_read_18753637	chr4	-	196	2	ISM	ENSMUSG00000028495.15	ENSMUST00000102814.5	878	5	1427	219	1427	-219	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1658	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCTCTGAAGAAGCAACG	NA	NA	NA	NA	NA	NA	NA	NA	86774222	86773115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_86773193_86774103
ONT_simulated_read_18755414	chrX	-	246	1	NIC	ENSMUSG00000018595.7	novel	1831	9	NA	NA	17975	0	mono-exon	FALSE	NA	NA	NA	NA	NA	399	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTATAAAGTACTAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	135658736	135658490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_135658500_135658700
ONT_simulated_read_18758011	chr1	-	1745	10	ISM	ENSMUSG00000026670.16	ENSMUST00000027981.8	2283	11	8012	327	8012	-327	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGGAGTTCATTTTTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	169994503	169969898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_169970142_169970965_169971033_169975564_169975613_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194
ONT_simulated_read_18758175	chr15	-	541	1	ISM	ENSMUSG00000052560.16	ENSMUST00000064391.12	3366	20	190298	1111	190254	-1111	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACGTTACTACTTTTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	90373337	90372796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_90372800_90373300
ONT_simulated_read_18760042	chr2	-	401	1	ISM	ENSMUSG00000075467.5	ENSMUST00000028295.9	2916	3	1567	2022	1567	-2022	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATCTGGTCTTGAGTTAG	NA	NA	NA	NA	NA	NA	NA	NA	26240555	26240154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_26240200_26240600
ONT_simulated_read_18760683	chr19	-	606	1	ISM	ENSMUSG00000025016.12	ENSMUST00000025989.10	8096	14	48857	3691	48840	-743	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCAACTGCATCTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	41203579	41202973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_41203000_41203600
ONT_simulated_read_18761460	chr15	-	861	7	ISM	ENSMUSG00000023015.15	ENSMUST00000171702.8	3052	18	25091	867	25091	-866	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGACACCCCTGTCTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	99524433	99519243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342
ONT_simulated_read_18762770	chr7	-	912	7	ISM	ENSMUSG00000002984.18	ENSMUST00000032555.10	1646	9	1695	190	1695	-190	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGGCGCAGAGGCGGCT	NA	NA	NA	NA	NA	NA	NA	NA	19447655	19435443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_19435783_19436772_19436876_19436990_19437068_19437193_19437317_19444657_19444764_19444842_19444945_19447593
ONT_simulated_read_1876493	chr7	-	468	5	ISM	ENSMUSG00000030417.16	ENSMUST00000120714.2	767	6	1028	-30	1028	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGATCTGCATTTTG	NA	NA	NA	NA	NA	NA	NA	NA	35345606	35341406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_35341611_35342039_35342112_35343048_35343141_35343775_35343838_35345568
ONT_simulated_read_18765453	chr10	-	301	1	ISM	ENSMUSG00000020133.9	ENSMUST00000020341.9	1649	2	1013	970	1013	-970	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTGTTCCCTCTTCCAT	NA	NA	NA	NA	NA	NA	NA	NA	80155358	80155057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80155100_80155400
ONT_simulated_read_18766123	chr9	-	300	3	ISM	ENSMUSG00000070319.7	ENSMUST00000004206.10	1101	11	2623	602	2623	-602	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTGTCACTAACCTGTCCG	NA	NA	NA	NA	NA	NA	NA	NA	20807296	20806246	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_20806266_20806384_20806493_20807123
ONT_simulated_read_187670	chr8	-	971	11	ISM	ENSMUSG00000031708.18	ENSMUST00000238997.2	1334	12	920	-2	920	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	NA	NA	NA	NA	NA	NA	NA	84300551	84298326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499
ONT_simulated_read_18768541	chr9	-	455	1	ISM	ENSMUSG00000032194.10	ENSMUST00000034717.7	5040	12	3085	28421	3085	-28421	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCCGGCCTGTCCACCCC	NA	NA	NA	NA	NA	NA	NA	NA	21706955	21706500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21706500_21707000
ONT_simulated_read_18769613	chr3	-	99	1	NIC	ENSMUSG00000023084.12	novel	3988	15	NA	NA	6846	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCTACCTAGGTCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	87646493	87646394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_87646400_87646500
ONT_simulated_read_1876964	chr15	-	224	1	ISM	ENSMUSG00000022555.13	ENSMUST00000023214.11	1888	17	9588	125	9588	-125	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTATGGGGCCTACTCC	NA	NA	NA	NA	NA	NA	NA	NA	76386563	76386339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76386300_76386600
ONT_simulated_read_18774015	chr4	-	3064	1	ISM	ENSMUSG00000028980.15	ENSMUST00000084117.13	4571	5	20216	376	20216	-376	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGGGGAGTCTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	150067371	150064307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_150064300_150067400
ONT_simulated_read_18778806	chr5	-	1085	6	ISM	ENSMUSG00000029189.11	ENSMUST00000031090.8	4512	24	12980	67698	0	-66890	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCGGTGAAATACTATCGC	NA	NA	NA	NA	NA	NA	NA	NA	53357814	53332122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_53332212_53339063_53339123_53342105_53342222_53343293_53343416_53345297_53345425_53357242
ONT_simulated_read_18779429	chr5	-	716	1	ISM	ENSMUSG00000028959.15	ENSMUST00000115043.8	3056	10	5440	599	5440	-599	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTCAGAGACCTATCCCA	NA	NA	NA	NA	NA	NA	NA	NA	24644752	24644036	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_24644000_24644800
ONT_simulated_read_1878325	chr17	-	1440	1	ISM	ENSMUSG00000024187.16	ENSMUST00000114988.8	3714	13	30516	446	30434	423	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCCACACCTTGCTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	26432681	26431241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_26431200_26432700
ONT_simulated_read_18783553	chr2	+	1690	11	ISM	ENSMUSG00000040084.10	ENSMUST00000038341.8	3668	23	0	18449	0	-18449	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCTGTCCTGTTCCATC	NA	NA	NA	NA	NA	NA	NA	NA	118428691	118453623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550
ONT_simulated_read_18784423	chr3	+	844	1	ISM	ENSMUSG00000027660.17	ENSMUST00000118470.8	6578	7	1775	24897	0	-21138	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTATTCCTGCCTCTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	31150981	31151825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_31151000_31151800
ONT_simulated_read_18789227	chr14	-	981	6	ISM	ENSMUSG00000021965.4	ENSMUST00000022536.3	2260	9	3980	1488	3980	-1488	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCCTTGGATGTTAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	58059640	58045505	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_58045536_58047399_58047601_58049036_58049123_58054101_58054209_58057610_58058020_58059492
ONT_simulated_read_18791970	chr10	+	947	5	ISM	ENSMUSG00000019943.11	ENSMUST00000020107.8	7130	21	99791	3047	46253	-3047	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTTTGGAAACATCACTC	NA	NA	NA	NA	NA	NA	NA	NA	98850804	98858958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_98850960_98851345_98851558_98852784_98852893_98854576_98854760_98858669
ONT_simulated_read_18794636	chr6	+	2610	4	ISM	ENSMUSG00000032712.17	ENSMUST00000100765.11	5356	6	254	7218	254	-7218	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTGGAAGCAAACAGAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	149211225	149229210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_149211403_149211819_149211876_149226229_149226299_149226902
ONT_simulated_read_18794783	chr1	-	663	1	ISM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	2858	1546	2858	-1546	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCAAGAGGGCTTTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	75193080	75192417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_75192400_75193100
ONT_simulated_read_18797	chr7	-	1774	6	ISM	ENSMUSG00000031078.16	ENSMUST00000033407.13	2913	17	24895	120	24895	-118	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTCCGTTGTTAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	143999587	143989589	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539
ONT_simulated_read_18798311	chr15	-	2510	13	ISM	ENSMUSG00000033762.9	ENSMUST00000036852.9	3896	22	982	1479	916	-1277	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGCCTTGGCGGCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	76593751	76589231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76589317_76589390_76589644_76589793_76590057_76590145_76590288_76590358_76590539_76590616_76590806_76590882_76590967_76591236_76591374_76591451_76591545_76592324_76592424_76592526_76592635_76592734_76592862_76593001
ONT_simulated_read_18801525	chr11	-	1455	7	ISM	ENSMUSG00000018362.15	ENSMUST00000018506.13	2054	11	7416	90	7244	-90	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCTGTCCTCTGAATTT	NA	NA	NA	NA	NA	NA	NA	NA	106882951	106879544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683
ONT_simulated_read_1880485	chr18	+	1748	8	ISM	ENSMUSG00000060450.15	ENSMUST00000236116.2	2410	10	3074	467	-685	-95	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTGTAGAAGGAAGAACAG	NA	NA	NA	NA	NA	NA	NA	NA	38432804	38449772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ONT_simulated_read_1881165	chr11	-	1529	9	ISM	ENSMUSG00000042302.15	ENST00000405015.7	3771	22	53830	89062	53796	-89062	internal_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGAACACCAGACTCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	22182042	22045842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_22046200_22050421_22050471_22051051_22051231_22087837_22088058_22096462_22096701_22101066_22101190_22119034_22119175_22122824_22123007_22182001
ONT_simulated_read_1881238	chr3	+	636	1	FSM	ENSMUSG00000036894.4	ENSMUST00000049064.4	6793	1	4279	1878	4279	-1878	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAATACAATACAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	61273337	61273973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_61273300_61274000
ONT_simulated_read_18813986	chr7	+	666	7	ISM	ENSMUSG00000053046.17	ENST00000531197.5	3170	19	43472	753	27	259	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATGTCACCTCCACGAG	NA	NA	NA	NA	NA	NA	NA	NA	141546946	141556228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_141547057_141547451_141547501_141550625_141550750_141552114_141552296_141552369_141552460_141552656_141552752_141556211
ONT_simulated_read_18814569	chr10	-	701	5	ISM	ENSMUSG00000025374.14	ENSMUST00000166608.8	979	7	879	116	879	-116	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGAGGGGTTGGAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	128244712	128237458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566
ONT_simulated_read_18814826	chr4	-	236	1	ISM	ENSMUSG00000028479.19	ENSMUST00000030201.14	5384	12	46848	3019	22899	1	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTCGGGAGCTGCTTAG	NA	NA	NA	NA	NA	NA	NA	NA	44037329	44037093	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_44037100_44037300
ONT_simulated_read_1881510	chr8	-	919	6	ISM	ENSMUSG00000031816.16	ENSMUST00000139782.8	1366	10	5306	-2	3971	-2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTATGTTTGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	121829743	121824293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_121824665_121825446_121825511_121825737_121825892_121827857_121827984_121828162_121828276_121829652
ONT_simulated_read_18817360	chr18	+	248	3	ISM	ENSMUSG00000117841.2	ENSMUST00000235919.2	358	5	110	57104	110	-57104	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTCGGATCTACAAAACAG	NA	NA	NA	NA	NA	NA	NA	NA	35933004	35934390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_35933083_35933162_35933269_35934326
ONT_simulated_read_18817694	chrX	-	158	1	ISM	ENSMUSG00000046032.17	ENSMUST00000120389.8	2415	4	10206	227	10206	-227	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACCTCGCCAGTGTCGGT	NA	NA	NA	NA	NA	NA	NA	NA	100255949	100255791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_100255800_100255900
ONT_simulated_read_18819750	chr1	-	1294	5	ISM	ENSMUSG00000033124.17	ENSMUST00000040689.15	3764	16	4114	4350	4114	-4350	internal_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAATCCCGGCTGGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	75164453	75161859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_75161946_75162309_75162490_75162594_75162749_75162833_75163583_75164328
ONT_simulated_read_18822542	chr3	-	560	4	ISM	ENSMUSG00000028029.12	ENST00000442366.6	882	5	2271	193	2271	-166	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	170	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGAGTGTGTGGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	132380623	132366434	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_132366503_132373145_132373315_132377739_132377949_132380509
ONT_simulated_read_18825278	chr3	-	801	4	ISM	ENSMUSG00000040774.16	ENSMUST00000039153.14	2020	9	-71	28180	0	-28180	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGGAACATTGCGATT	NA	NA	NA	NA	NA	NA	NA	NA	106455118	106438478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_106438595_106440670_106440819_106446505_106446920_106454995
ONT_simulated_read_18828111	chr6	-	338	4	ISM	ENSMUSG00000037709.14	ENSMUST00000173193.2	1998	17	-82	51605	-58	-51605	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCAGGATGATGTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	59001407	58964174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_58964318_58966728_58966771_58980449_58980492_59001296
ONT_simulated_read_18828400	chr5	-	744	7	ISM	ENSMUSG00000029454.16	ENSMUST00000111782.8	969	9	10769	613	10769	-613	internal_fragment	TRUE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGAGAAGCTGAATGAGG	NA	NA	NA	NA	NA	NA	NA	NA	121672494	121663820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_121663831_121664807_121664924_121665153_121665285_121666932_121667054_121669595_121669784_121671371_121671453_121672397
ONT_simulated_read_18831466	chr5	-	1411	1	FSM	ENSMUSG00000107050.2	ENSMUST00000202959.2	2331	1	0	920	0	-920	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACACTGTCTCTCTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	65839687	65838276	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_65838300_65839700
ONT_simulated_read_18837421	chr11	+	324	5	ISM	ENSMUSG00000018858.16	ENSMUST00000103036.5	749	6	65	596	52	-400	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCGAGACATGATTGCCG	NA	NA	NA	NA	NA	NA	NA	NA	115294647	115301149	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_115294700_115297376_115297414_115300305_115300366_115300885_115300969_115301057
ONT_simulated_read_18840247	chr4	-	564	1	ISM	ENSMUSG00000043872.15	ENSMUST00000106102.9	3852	8	11246	2249	9080	-1701	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCTGTTTCACCCATGAA	NA	NA	NA	NA	NA	NA	NA	NA	126943699	126943135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126943100_126943700
ONT_simulated_read_18841409	chr2	+	506	3	ISM	ENSMUSG00000039263.17	ENSMUST00000044415.16	2467	12	0	11361	0	-11361	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAGAGGACAGTCATGGT	NA	NA	NA	NA	NA	NA	NA	NA	173952141	173953502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_173952366_173952869_173953056_173953406
ONT_simulated_read_18841984	chr2	-	748	8	ISM	ENSMUSG00000037110.21	ENST00000202677.12	5729	38	26782	187058	26671	-187058	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAACAATTTACAGTACAA	NA	NA	NA	NA	NA	NA	NA	NA	146327148	146289343	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_146289396_146291129_146291269_146292371_146292488_146293602_146293781_146295328_146295373_146302633_146302692_146321296_146321350_146327040
ONT_simulated_read_18842454	chr19	-	657	6	ISM	ENSMUSG00000025188.16	ENSMUST00000069298.13	3196	18	13131	4062	11429	-3663	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGATGGACAAGTTTATC	NA	NA	NA	NA	NA	NA	NA	NA	42755273	42750581	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755124
ONT_simulated_read_18844480	chr4	-	1946	1	ISM	ENSMUSG00000057637.14	ENSMUST00000105778.8	7304	10	103369	0	52771	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGAGTGTGCGCACGCTC	NA	NA	NA	NA	NA	NA	NA	NA	142835906	142833960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_142834000_142835900
ONT_simulated_read_18852412	chr4	+	717	4	ISM	ENSMUSG00000028700.15	ENST00000396420.7	3422	19	17317	4057	3164	-3645	internal_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGACCAGGTAGCCTAGGT	NA	NA	NA	NA	NA	NA	NA	NA	116011791	116012989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_116012344_116012425_116012468_116012656_116012716_116012925
ONT_simulated_read_18856645	chr5	+	448	1	ISM	ENSMUSG00000023104.10	ENSMUST00000023867.8	4995	11	18283	385	18283	-385	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGATGCCCTCTTCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	134629826	134630274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_134629800_134630300
ONT_simulated_read_18858746	chr19	-	2116	20	ISM	ENSMUSG00000024942.20	ENSMUST00000025891.11	3062	22	738	1449	0	0	internal_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGATAATCCCCCCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	6064498	6040021	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6046808_6046821_6047720_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230
ONT_simulated_read_1886159	chr5	-	851	6	ISM	ENSMUSG00000029547.11	ENSMUST00000200393.5	7070	47	10400	11418	10400	-11418	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGACCCCCAGACCATCAGT	NA	NA	NA	NA	NA	NA	NA	NA	139750993	139748457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_139748474_139748562_139748743_139749759_139749910_139749982_139750163_139750422_139750553_139750798
ONT_simulated_read_18864354	chr4	-	812	1	ISM	ENSMUSG00000039740.7	ENSMUST00000044148.3	3021	2	1922	1767	1922	-1767	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCAGACCAGCTGTACCAG	NA	NA	NA	NA	NA	NA	NA	NA	47472411	47471599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_47471600_47472400
ONT_simulated_read_18864673	chr16	-	1157	2	ISM	ENSMUSG00000005718.9	ENSMUST00000005862.9	2247	7	12444	86	12444	-86	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAATGGGGGTAGGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	4365274	4362610	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4363612_4365118
ONT_simulated_read_18866369	chr8	-	1068	6	ISM	ENSMUSG00000031984.9	ENSMUST00000034465.9	2340	7	1848	1037	1848	-1037	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCTCTAAGTGTCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	125588011	125566263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684
ONT_simulated_read_18866374	chr18	-	174	1	ISM	ENSMUSG00000025427.16	ENST00000590330.1	1004	2	1902	519	1707	-519	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACCCTCTTCTCAGTAC	NA	NA	NA	NA	NA	NA	NA	NA	77651125	77650951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_77651000_77651100
ONT_simulated_read_18867062	chr5	-	1528	2	ISM	ENSMUSG00000045438.13	ENSMUST00000049630.13	2461	3	2586	744	2586	-744	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGTAAGTAGGTAGTAAGT	NA	NA	NA	NA	NA	NA	NA	NA	139328402	139322687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_139324131_139328317
ONT_simulated_read_18868670	chr14	-	664	6	ISM	ENSMUSG00000022177.10	ENSMUST00000022784.9	1587	10	2150	2484	2150	-2198	internal_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCAAGAGCCAGCAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	54789668	54781725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_54781808_54783182_54783280_54786322_54786458_54787125_54787258_54787350_54787494_54789593
ONT_simulated_read_18869146	chr13	+	212	1	ISM	ENSMUSG00000021598.10	ENSMUST00000022089.10	913	4	0	6052	0	-4243	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGACGGCCCGGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	69957959	69958171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_69958000_69958200
ONT_simulated_read_1887149	chr2	+	1092	6	ISM	ENSMUSG00000026821.17	ENSMUST00000113893.8	3683	18	8978	7579	8791	-6780	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTAAAGAAGACGTGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	28432344	28435499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_28432496_28432902_28432963_28433565_28433760_28434000_28434399_28435021_28435238_28435426
ONT_simulated_read_18872648	chr9	-	94	1	ISM	ENSMUSG00000070319.7	ENSMUST00000004206.10	1101	11	4181	0	4181	0	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCCTGCTTATTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	20805738	20805644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_20805600_20805700
ONT_simulated_read_18872685	chr15	-	599	1	NIC	ENSMUSG00000079018.11	novel	784	6	NA	NA	3177	0	mono-exon	FALSE	NA	NA	NA	NA	NA	453	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTTTTTCTTATGCTA	NA	NA	NA	NA	NA	NA	NA	NA	74917460	74916861	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_74916900_74917500
ONT_simulated_read_18875380	chr11	-	1325	10	ISM	ENSMUSG00000025572.19	ENSMUST00000026659.10	2865	20	1374	7477	-224	756	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGCAGGTCGTCGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	117670091	117664290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988
ONT_simulated_read_18875744	chr11	-	358	1	Genic_Genomic	ENSMUSG00000017288.16	novel	NA	NA	NA	NA	132934	1	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCATCCCTGAAGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	75937408	75937050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr11_-_75937000_75937400
ONT_simulated_read_18877056	chr7	-	2378	1	ISM	ENSMUSG00000037239.9	ENSMUST00000048923.7	4056	6	6493	948	6493	-948	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCCCATGGAGAAGAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	28861579	28859201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28859200_28861600
ONT_simulated_read_18884641	chr2	+	357	3	ISM	ENSMUSG00000045503.17	ENSMUST00000109352.8	2001	6	0	4576	0	-4572	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAATGCCCCTCGGTTGCCG	NA	NA	NA	NA	NA	NA	NA	NA	164298895	164302856	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_164298950_164299888_164300018_164302682
ONT_simulated_read_18885666	chr6	+	1067	9	ISM	ENSMUSG00000029777.11	ENSMUST00000003572.10	2380	17	10056	11412	10056	-11412	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGTTCCTGCTACGACCTC	NA	NA	NA	NA	NA	NA	NA	NA	55025047	55045073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075_55040239_55042432_55042598_55045045
ONT_simulated_read_18886597	chr15	-	1833	13	ISM	ENSMUSG00000042632.18	ENST00000332509.8	2822	17	19455	117	19167	-117	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAAACCGGTTCCCACGA	NA	NA	NA	NA	NA	NA	NA	NA	79192997	79170873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868
ONT_simulated_read_18887449	chr13	-	640	3	ISM	ENSMUSG00000021592.19	ENSMUST00000239063.2	3657	8	23640	6216	23640	-6216	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTAAGTACTGTGGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	76223139	76214756	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_76214979_76220218_76220391_76222893
ONT_simulated_read_18888810	chr17	-	533	5	ISM	ENSMUSG00000024120.13	ENST00000682104.1	2022	19	2873	15492	2873	-15492	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTATTCCATATAAGAC	NA	NA	NA	NA	NA	NA	NA	NA	85077887	85071879	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_85071974_85074420_85074540_85077022_85077131_85077427_85077534_85077781
ONT_simulated_read_18889546	chr8	-	1028	9	ISM	ENSMUSG00000003575.14	ENST00000601916.1	1438	10	2819	270	2819	-270	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	353	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGACCCTCTGACCCTG	NA	NA	NA	NA	NA	NA	NA	NA	70858839	70838877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70838986_70840190_70840372_70845571_70845706_70850395_70850605_70850945_70850987_70853268_70853355_70855080_70855176_70857908_70857971_70858727
ONT_simulated_read_18889685	chr11	+	554	6	ISM	ENSMUSG00000020739.12	ENSMUST00000021085.11	2230	19	16070	1076	16070	-1076	internal_fragment	TRUE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCGCTTTGGTGACGCT	NA	NA	NA	NA	NA	NA	NA	NA	115471329	115473735	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702
ONT_simulated_read_18889904	chr15	+	1132	8	ISM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	0	71557	0	-71557	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTCCTGGATGTCTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	85220445	85275856	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838
ONT_simulated_read_18892189	chr10	+	1198	7	NNC	ENSMUSG00000054452.11	novel	1411	7	NA	NA	0	-210	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTAAAAGTTGGTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	81395327	81401986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_+_81395503_81397052_81397151_81399928_81399993_81400506_81400552_81400681_81400745_81401125_81401201_81401308
ONT_simulated_read_18892385	chr9	+	644	4	ISM	ENSMUSG00000056267.15	ENSMUST00000191335.7	2120	16	48025	287	48025	-287	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAGAAATGCATCTAGAG	NA	NA	NA	NA	NA	NA	NA	NA	99173540	99179751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_99173749_99178079_99178227_99178328_99178498_99179631
ONT_simulated_read_18893689	chr18	-	1118	9	ISM	ENSMUSG00000024286.9	ENSMUST00000053917.6	5757	10	63341	4006	63161	-1009	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTCATGGAGGAAACAGAC	NA	NA	NA	NA	NA	NA	NA	NA	9386809	9316309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_9316673_9319408_9319572_9332783_9332951_9345193_9345314_9345413_9345472_9349387_9349424_9353406_9353508_9377793_9377829_9386734
ONT_simulated_read_18897423	chr12	-	592	1	ISM	ENSMUSG00000020635.9	ENSMUST00000020964.7	976	4	7826	0	7670	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGTTGTGGGAGGTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	4883765	4883173	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_4883200_4883800
ONT_simulated_read_18899000	chr6	-	561	3	ISM	ENSMUSG00000051169.15	ENSMUST00000060634.14	1224	9	2407	83	1030	-63	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	442	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTGATTGCTGTGTGGCAC	NA	NA	NA	NA	NA	NA	NA	NA	113393873	113392372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113392684_113393267_113393394_113393749
ONT_simulated_read_18902786	chr19	-	1911	7	ISM	ENSMUSG00000035173.15	ENSMUST00000076085.4	2754	15	13479	-728	13479	728	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTTACTAATTAAAATTTT	NA	NA	NA	NA	NA	NA	NA	NA	56788636	56778666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_56779479_56780372_56780593_56781727_56781939_56783521_56783603_56785875_56786066_56786998_56787255_56788495
ONT_simulated_read_18903069	chr6	-	801	1	NIC	ENSMUSG00000086429.10	novel	551	3	NA	NA	5755	-238	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAACCATATAGTTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	113048397	113047596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_113047600_113048400
ONT_simulated_read_18904995	chr2	-	643	1	ISM	ENSMUSG00000018322.11	ENSMUST00000018466.4	2302	7	16620	300	16620	-300	mono-exon	FALSE	NA	NA	NA	NA	NA	782	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCTTTAGTCCAGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	163896402	163895759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_163895800_163896400
ONT_simulated_read_18905322	chr1	-	270	2	ISM	ENSMUSG00000026155.14	ENSMUST00000129254.8	1365	10	60243	2150	60243	-2150	internal_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGGCATGATGGTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	23888527	23887526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_23887653_23888383
ONT_simulated_read_18907494	chr8	-	212	1	ISM	ENSMUSG00000041679.10	ENSMUST00000070508.8	1922	5	10280	3444	7372	0	mono-exon	FALSE	NA	NA	NA	NA	NA	292	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCTGGCCCAGCCTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	106042628	106042416	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_106042400_106042600
ONT_simulated_read_18907847	chr1	-	738	5	ISM	ENSMUSG00000026683.15	ENSMUST00000028000.13	2068	15	20891	463	20874	-463	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAAACGGCCTGCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	169338106	169326342	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968
ONT_simulated_read_18908095	chr5	+	1750	11	ISM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	2880	0	2444	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACTTGAAATGACTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	129866941	129875212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
ONT_simulated_read_18908186	chr4	-	977	3	ISM	ENSMUSG00000036078.17	ENSMUST00000059354.15	1640	4	382	406	382	-406	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	409	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACCTGCAGCTATGATG	NA	NA	NA	NA	NA	NA	NA	NA	41740977	41738898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_41739581_41740549_41740643_41740775
ONT_simulated_read_18908501	chr5	-	247	3	ISM	ENSMUSG00000059518.15	ENSMUST00000085941.12	740	5	3978	207	3978	-76	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGGCATCAGGGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	137011777	137011250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137011272_137011371_137011542_137011721
ONT_simulated_read_1890946	chr1	-	368	4	ISM	ENSMUSG00000013997.11	ENSMUST00000111295.8	1335	7	1495	533	1478	-533	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAATCTCAGTGCTATGT	NA	NA	NA	NA	NA	NA	NA	NA	171171718	171170344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631
ONT_simulated_read_18909760	chr1	-	693	8	ISM	ENSMUSG00000026245.17	ENSMUST00000068333.14	1951	17	10635	38204	10597	-38204	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCTTTGAAACATATTT	NA	NA	NA	NA	NA	NA	NA	NA	78454899	78439908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829
ONT_simulated_read_18910269	chr15	-	1234	1	ISM	ENSMUSG00000033228.9	ENSMUST00000047835.8	5766	15	45954	0	5958	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTGTTAATTTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	96312770	96311536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_96311500_96312800
ONT_simulated_read_18911484	chr12	-	180	1	ISM	ENSMUSG00000020673.15	ENSMUST00000021005.15	3299	17	39900	37886	26833	0	mono-exon	FALSE	NA	NA	NA	NA	NA	312	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTCCAAGCCTCTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	30142723	30142543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_30142500_30142700
ONT_simulated_read_18911615	chr3	+	559	5	ISM	ENSMUSG00000028060.15	ENSMUST00000029696.11	2981	14	7638	12580	7591	-157	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTCCCCCTCCTCAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	88600747	88607651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567
ONT_simulated_read_1891888	chr19	-	1318	5	ISM	ENSMUSG00000024797.15	ENSMUST00000025711.13	2675	10	762	2106	731	-2106	internal_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGCTGCTCTCTCGCCT	NA	NA	NA	NA	NA	NA	NA	NA	6126499	6119977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6120104_6120468_6121187_6121295_6121516_6121591_6121739_6126392
ONT_simulated_read_18919286	chr18	+	1700	3	FSM	ENSMUSG00000046668.10	ENST00000302517.8	2560	3	113	747	105	-747	multi-exon	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACATCAACAACAACAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	35962945	35993991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_35963293_35991445_35992510_35993702
ONT_simulated_read_18921526	chr2	-	904	6	ISM	ENSMUSG00000026890.20	ENST00000559895.5	3277	7	4154	1884	4154	-154	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGAAGGCAGGCTCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	35984417	35973852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_35974088_35977379_35977484_35980973_35981149_35981331_35981428_35981617_35981719_35984224
ONT_simulated_read_18922162	chr12	-	1409	11	ISM	ENSMUSG00000021071.18	ENST00000684578.1	4359	13	54945	3803	54945	-84	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAGCAAGGCCCCATAGC	NA	NA	NA	NA	NA	NA	NA	NA	70339119	70295116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_70295202_70297730_70298035_70298793_70298818_70299216_70299259_70301811_70302001_70314835_70314975_70319083_70319242_70327329_70327484_70328606_70328718_70337044_70337168_70339039
ONT_simulated_read_18933636	chrX	-	674	2	ISM	ENSMUSG00000019088.15	ENSMUST00000114189.10	755	3	4259	0	4259	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCTTAGGTCTAAGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	73320945	73316924	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_73317298_73320644
ONT_simulated_read_18933700	chr17	-	1302	6	ISM	ENSMUSG00000024006.18	ENSMUST00000232836.2	2778	13	23090	152	23090	-152	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGATCTTAGAAAGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	29196575	29190843	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513
ONT_simulated_read_18934139	chr18	-	1603	17	ISM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	129923	919	129923	-919	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTAGCATCGTCTAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	34010049	33930298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961
ONT_simulated_read_18936784	chr11	+	1972	12	ISM	ENSMUSG00000025793.18	ENSMUST00000106205.9	2900	22	9880	0	9880	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATGATTGATTGTTCG	NA	NA	NA	NA	NA	NA	NA	NA	120368340	120374805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369915_120370124_120370378_120370552_120370624_120370766_120370849_120371025_120373355_120373490_120373569_120373690_120373840_120373928_120374214
ONT_simulated_read_1893685	chr2	-	1305	1	NIC	ENSMUSG00000074825.5	novel	3424	3	NA	NA	400	-357	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	402	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACTTCAAGACAGCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	126984110	126982805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_126982800_126984100
ONT_simulated_read_18938060	chr13	-	2043	14	ISM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	5342	723	-1440	107	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	338	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATAGATTGTGATCAACA	NA	NA	NA	NA	NA	NA	NA	NA	74493057	74471095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969
ONT_simulated_read_18938680	chr13	+	329	2	ISM	ENSMUSG00000021458.18	ENSMUST00000021911.15	2979	16	283626	241	283626	-241	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCAGTCATTCAATGAAG	NA	NA	NA	NA	NA	NA	NA	NA	63446606	63449857	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_63446671_63449592
ONT_simulated_read_18939700	chr5	-	730	1	ISM	ENSMUSG00000072889.10	ENSMUST00000087216.12	3712	23	45374	280	45374	-280	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGTTTTGTAAAACTTGT	NA	NA	NA	NA	NA	NA	NA	NA	72671653	72670923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_72670900_72671700
ONT_simulated_read_18943514	chr8	+	830	6	FSM	ENSMUSG00000031792.16	ENST00000539737.6	821	6	-9	0	0	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	493	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCCCGTGCCTCTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	96058911	96073261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_96059094_96059995_96060163_96065261_96065446_96070584_96070691_96071916_96072001_96073154
ONT_simulated_read_18947204	chrX	+	1831	14	ISM	ENSMUSG00000037369.18	ENST00000543216.6	5528	27	5	28962	5	-28962	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTTTCTGCAGGCCATGT	NA	NA	NA	NA	NA	NA	NA	NA	18028886	18117128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18114508_18114599_18116945
ONT_simulated_read_18949128	chr5	-	377	1	ISM	ENSMUSG00000063015.13	ENSMUST00000058550.15	2804	7	23102	1084	23102	-1084	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCCTGTCCACCTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	93331252	93330875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_93330900_93331300
ONT_simulated_read_18951541	chr7	-	748	4	ISM	ENSMUSG00000030591.18	ENSMUST00000182328.8	1391	7	3321	191	3250	-191	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTATCCAGCTGTGGATG	NA	NA	NA	NA	NA	NA	NA	NA	28876656	28873803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490
ONT_simulated_read_18952266	chr8	-	652	10	ISM	ENSMUSG00000070003.8	ENSMUST00000049908.11	1475	17	8704	208	8704	-207	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCGGCAGCACCCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	71052260	71050347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71050419_71050662_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174
ONT_simulated_read_1895481	chr2	-	547	5	ISM	ENSMUSG00000027639.17	ENSMUST00000057725.10	3926	16	27729	1868	14409	-1868	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAATATCTGCGGTTAG	NA	NA	NA	NA	NA	NA	NA	NA	156949456	156941320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_156941424_156943640_156943779_156946751_156946857_156948150_156948244_156949348
ONT_simulated_read_18955431	chr11	+	630	1	ISM	ENSMUSG00000042650.4	ENSMUST00000044250.4	5730	4	0	19905	0	-19905	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGACTCGGACCCCGAGC	NA	NA	NA	NA	NA	NA	NA	NA	60428803	60429433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_60428800_60429400
ONT_simulated_read_18956738	chr2	-	1965	1	NIC	ENSMUSG00000087203.8	novel	3469	10	NA	NA	39277	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGTACAAAAAAGAAGGCGTG	NA	NA	NA	NA	NA	NA	NA	NA	117902295	117900330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_117900300_117902300
ONT_simulated_read_1895689	chr5	-	342	1	NIC	ENSMUSG00000029617.11	novel	1683	13	NA	NA	26562	0	mono-exon	FALSE	NA	NA	NA	NA	NA	227	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTCCTGTTGAGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	143925068	143924726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_143924700_143925100
ONT_simulated_read_1895787	chr14	-	378	4	ISM	ENSMUSG00000042354.8	ENSMUST00000037739.8	1947	15	4152	1343	4152	-1343	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGAGTATAAGGATTCTC	NA	NA	NA	NA	NA	NA	NA	NA	30736957	30735732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_30735753_30736009_30736185_30736546_30736635_30736862
ONT_simulated_read_18958500	chr2	+	747	1	NIC	ENSMUSG00000026648.19	novel	7075	16	NA	NA	15962	-109	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCCGAAGCGGAGCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	3453985	3454732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_+_3454000_3454700
ONT_simulated_read_18961426	chr8	-	1283	1	ISM	ENSMUSG00000036120.11	ENSMUST00000075724.9	3609	9	5706	1360	2846	1100	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTGTTCATCTTTCAAG	NA	NA	NA	NA	NA	NA	NA	NA	70586098	70584815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70584800_70586100
ONT_simulated_read_18962322	chrX	-	664	1	ISM	ENSMUSG00000056537.12	ENSMUST00000121153.8	7439	5	17269	6189	17269	-6189	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCTTCAAGTAAGAAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	103007621	103006957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_103007000_103007600
ONT_simulated_read_18964424	chr6	-	365	1	NIC	ENSMUSG00000030315.16	novel	2028	5	NA	NA	3833	17	mono-exon	FALSE	NA	NA	NA	NA	NA	1179	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGGGGGAGGGTGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	114839398	114839033	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_114839000_114839400
ONT_simulated_read_18966524	chr14	+	1848	4	ISM	ENSMUSG00000041408.19	ENSMUST00000169910.8	4066	20	51	50880	0	-50880	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACCAGAAAGATTTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	34396129	34417029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_34396318_34398910_34399432_34413638_34414692_34416943
ONT_simulated_read_18968720	chrX	+	1257	8	ISM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	2156	706	2156	-706	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCTGTCCTTGTTCTAGG	NA	NA	NA	NA	NA	NA	NA	NA	73350759	73354762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
ONT_simulated_read_18969301	chr14	-	1646	1	ISM	ENSMUSG00000040760.12	ENSMUST00000036570.5	7642	22	47361	3238	47361	-3238	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTACCCAAACATACA	NA	NA	NA	NA	NA	NA	NA	NA	26645828	26644182	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_26644200_26645800
ONT_simulated_read_18971643	chr12	+	2575	4	FSM	ENSMUSG00000037957.15	ENST00000335263.9	2586	4	10	1	10	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATTTGTTTATCCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	110704413	110770672	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_110704712_110745729_110745913_110759547_110760808_110769838
ONT_simulated_read_1897214	chr6	+	552	2	ISM	ENSMUSG00000055172.11	ENSMUST00000068593.9	2981	11	0	9636	0	-9636	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGTGAAGCTGGTCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	124489363	124490766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_124489760_124490610
ONT_simulated_read_18972243	chr1	-	1280	9	ISM	ENSMUSG00000016481.16	ENSMUST00000193094.6	2776	10	1334	1340	1313	-63	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTATAAGAGTTGTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	194812318	194781029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_194781150_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137
ONT_simulated_read_18973846	chr4	-	226	1	FSM	ENSMUSG00000082279.2	ENSMUST00000121383.2	1016	1	0	790	0	-790	mono-exon	FALSE	NA	NA	NA	NA	NA	762	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTACAAAGATAAAGAATTC	NA	NA	NA	NA	NA	NA	NA	NA	107185696	107185470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_107185500_107185700
ONT_simulated_read_18974187	chr6	+	2129	16	ISM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	17407	1618	17407	-1612	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCTACACAAAGGTCGCC	NA	NA	NA	NA	NA	NA	NA	NA	125090531	125105936	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754
ONT_simulated_read_18979117	chr17	-	586	4	ISM	ENSMUSG00000073437.11	ENSMUST00000181760.8	1362	6	1832	453	1049	-453	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGACATCCAAGGATGCCT	NA	NA	NA	NA	NA	NA	NA	NA	24631549	24628923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24629146_24629231_24629328_24630898_24631058_24631440
ONT_simulated_read_18984453	chr4	-	1959	5	ISM	ENSMUSG00000057637.14	ENSMUST00000105778.8	7304	10	33320	27239	-17278	-25337	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTCCTGCAGGGATTTCA	NA	NA	NA	NA	NA	NA	NA	NA	142905955	142861199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_142862670_142868693_142868805_142888625_142888753_142896605_142896759_142905857
ONT_simulated_read_18985450	chr2	-	448	1	NIC	ENSMUSG00000027002.14	novel	4469	31	NA	NA	79852	-447	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTAGCCCCCATCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	80331756	80331308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_80331300_80331800
ONT_simulated_read_18986463	chr1	+	687	1	FSM	ENSMUSG00000104046.2	ENSMUST00000193241.2	2279	1	0	1592	0	-1592	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTGTTCTAGGAAATAACA	NA	NA	NA	NA	NA	NA	NA	NA	5377961	5378648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_5378000_5378600
ONT_simulated_read_18986707	chr9	-	663	5	ISM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	17976	14153	17906	11363	internal_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCGTGGTGGGGATGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	36660999	36654792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848
ONT_simulated_read_18987169	chr10	-	1072	4	ISM	ENSMUSG00000003346.15	ENSMUST00000003436.12	1468	5	3450	90	-34	-89	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATGTTCAGGCGTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	80422725	80419577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80419898_80419976_80420157_80421441_80421637_80422348
ONT_simulated_read_18990948	chr8	-	729	1	ISM	ENSMUSG00000069633.13	ENSMUST00000004686.13	2870	5	8271	1576	8236	-1573	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCCTCAGAATCTGACT	NA	NA	NA	NA	NA	NA	NA	NA	3509409	3508680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_3508700_3509400
ONT_simulated_read_189931	chr2	-	306	3	ISM	ENSMUSG00000027620.17	ENSMUST00000109584.8	667	4	1007	0	349	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAGGATGGAATTTATGAC	NA	NA	NA	NA	NA	NA	NA	NA	156021151	156016693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_156016895_156019255_156019306_156021096
ONT_simulated_read_18993782	chr14	-	1534	1	ISM	ENSMUSG00000062014.14	ENSMUST00000111817.8	4171	7	10445	2115	10445	-2115	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTTTTACTGGAGGGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	47049254	47047720	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_47047700_47049300
ONT_simulated_read_18995459	chr3	-	927	5	ISM	ENSMUSG00000059834.13	ENSMUST00000026866.15	3005	21	85162	109	60516	-109	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGGAGATTTAATGTCT	NA	NA	NA	NA	NA	NA	NA	NA	41611787	41581263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_41581670_41583952_41584049_41586087_41586167_41601879_41602077_41611638
ONT_simulated_read_1899638	chr15	-	562	4	ISM	ENSMUSG00000042961.14	ENST00000354891.7	3494	23	64617	43061	-3559	-43061	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGGGGCCTGGCATACGG	NA	NA	NA	NA	NA	NA	NA	NA	7283217	7279604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_7279656_7280674_7280776_7281886_7281988_7282908
ONT_simulated_read_18997966	chr9	+	930	8	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	0	905	0	-905	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTGAAAAGCCCAGAAATC	NA	NA	NA	NA	NA	NA	NA	NA	64080656	64085043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002
ONT_simulated_read_19004600	chr17	-	941	3	ISM	ENSMUSG00000024002.19	ENSMUST00000003726.16	5957	20	85518	1073	85518	-1073	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGTCCTACCCATTGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	32417553	32416320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32416795_32417004_32417249_32417330
ONT_simulated_read_190061	chr16	-	2456	7	ISM	ENSMUSG00000004462.8	ENSMUST00000004576.8	2803	8	15584	0	15582	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGCCAGAGTTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	22660835	22631963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478
ONT_simulated_read_1900615	chr2	-	960	8	ISM	ENSMUSG00000027360.6	ENST00000267845.8	2213	12	14272	734	14272	-734	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGCACTTCCCAGCCGA	NA	NA	NA	NA	NA	NA	NA	NA	126446266	126436418	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_126436607_126436756_126436859_126439790_126439890_126443533_126443625_126443706_126443870_126444880_126444948_126445761_126445906_126446160
ONT_simulated_read_19006723	chr15	-	1259	1	ISM	ENSMUSG00000033228.9	ENSMUST00000047835.8	5766	15	40013	5916	17	-4789	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAATCAGATAAATTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	96318711	96317452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_96317500_96318700
ONT_simulated_read_1901036	chr14	+	803	7	ISM	ENSMUSG00000041650.16	ENSMUST00000038374.13	2592	24	179716	201	179716	-201	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATACTTGTACATATGA	NA	NA	NA	NA	NA	NA	NA	NA	122951466	123127155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
ONT_simulated_read_1901291	chr10	+	338	3	FSM	ENSMUSG00000006728.13	ENST00000549606.5	366	3	22	6	1	-6	multi-exon	FALSE	canonical	NA	NA	NA	NA	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGGTACTGGACCTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	126899472	126902100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_126899629_126901821_126901873_126901969
ONT_simulated_read_19013083	chr6	-	404	3	ISM	ENSMUSG00000004446.13	ENSMUST00000004560.12	2189	6	16492	2920	16492	-2920	internal_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGGAGAACGACAAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	120877322	120872734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_120872793_120874180_120874321_120877116
ONT_simulated_read_19013232	chr11	-	770	5	ISM	ENSMUSG00000000753.16	ENST00000254722.9	1250	7	2261	194	2261	-194	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCTCACCCAAGTGGAACA	NA	NA	NA	NA	NA	NA	NA	NA	75306556	75301163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_75301220_75301659_75301871_75304732_75304876_75305746_75305951_75306400
ONT_simulated_read_1901421	chr6	-	1657	1	ISM	ENSMUSG00000059486.12	ENSMUST00000114323.8	3816	4	17361	1195	17361	-1194	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAAAGATATGCTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	56757360	56755703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_56755700_56757400
ONT_simulated_read_19016581	chr7	+	4749	21	ISM	ENSMUSG00000038738.16	ENST00000359082.3	6453	22	0	3679	0	-3679	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCCTCCCCAGCTACCCC	NA	NA	NA	NA	NA	NA	NA	NA	43962130	44003082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_43962386_43962542_43962747_43963175_43963248_43965456_43965566_43965767_43965920_43968500_43968669_43969066_43969184_43974748_43974827_43975061_43975129_43975379_43975711_43976456_43976651_43982715_43982830_43982966_43983043_43991521_43991605_43991843_43991969_43992468_43992605_43993081_43993163_43993929_43993999_43994322_43994442_44000371_44000469_44000980
ONT_simulated_read_190166	chr7	+	1023	2	FSM	ENSMUSG00000049583.16	ENST00000534201.5	1026	2	3	0	3	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1330	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGATACTTTCCAACTT	NA	NA	NA	NA	NA	NA	NA	NA	87233582	87252410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_87233749_87251553
ONT_simulated_read_19017945	chr5	+	546	4	ISM	ENSMUSG00000029504.6	ENSMUST00000031478.6	4846	15	3411	2625	3411	-2625	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGCTTATACGTTAGCG	NA	NA	NA	NA	NA	NA	NA	NA	110804727	110805737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_110804784_110804953_110805018_110805116_110805252_110805446
ONT_simulated_read_19019447	chr5	-	1338	1	ISM	ENSMUSG00000029674.14	ENSMUST00000015137.10	3331	16	31222	0	20872	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCGTGTGTGTGTCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	134686230	134684892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_134684900_134686200
ONT_simulated_read_19019943	chr4	-	1514	8	ISM	ENSMUSG00000028917.15	ENST00000642363.1	3815	21	33262	394	33262	-394	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTTGAACAGTGTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	141357972	141353441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_141354019_141355061_141355179_141355259_141355440_141355591_141355752_141356391_141356458_141356760_141356952_141357220_141357354_141357882
ONT_simulated_read_19022588	chr3	-	1229	1	NIC	ENSMUSG00000062232.15	novel	6683	23	NA	NA	80415	-803	mono-exon	FALSE	NA	NA	NA	NA	NA	256	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTTGCAAAATGGTTAGT	NA	NA	NA	NA	NA	NA	NA	NA	78971869	78970640	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_78970600_78971900
ONT_simulated_read_19022637	chr12	-	746	1	ISM	ENSMUSG00000051367.9	ENSMUST00000050029.8	3316	2	3379	1228	3379	-1228	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGGGAACTGGCTGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	73090574	73089828	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_73089800_73090600
ONT_simulated_read_19025251	chr19	-	3181	10	NIC	ENSMUSG00000025085.17	novel	5907	21	NA	NA	57531	1366	combination_of_known_splicesites	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAACAAAGAAACAAACA	NA	NA	NA	NA	NA	NA	NA	NA	57049814	57023348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_57025770_57027838_57027920_57028918_57028994_57030346_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57037893_57037942_57039561_57039667_57049684
ONT_simulated_read_1903074	chr1	-	616	1	ISM	ENSMUSG00000026526.15	ENSMUST00000027810.14	2636	10	24093	553	24093	-553	mono-exon	FALSE	NA	NA	NA	NA	NA	267	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTCCTTTTCTTCCAT	NA	NA	NA	NA	NA	NA	NA	NA	175429108	175428492	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_175428500_175429100
ONT_simulated_read_19031188	chr10	-	228	1	ISM	ENSMUSG00000004934.15	ENSMUST00000005064.14	2571	11	3733	10697	3733	-10697	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACACTCCATGCCCAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	81000024	80999796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80999800_8.1e+07
ONT_simulated_read_19032345	chr8	-	672	1	ISM	ENSMUSG00000035569.18	ENST00000301030.10	9166	12	157928	318	31661	167	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGCCTGGACACAGGGA	NA	NA	NA	NA	NA	NA	NA	NA	123611065	123610393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123610400_123611100
ONT_simulated_read_19032513	chr9	-	2217	1	ISM	ENSMUSG00000039607.18	ENSMUST00000111773.10	7908	15	673774	3727	673428	826	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAGAAGCAGTAGCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	116407757	116405540	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_116405500_116407800
ONT_simulated_read_19033201	chr9	-	996	9	ISM	ENSMUSG00000032131.17	ENSMUST00000034648.16	3476	14	5622	4573	5622	-4573	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTGGCGATGATGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	44193219	44189057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44189124_44189328_44189428_44190268_44190412_44190599_44190715_44190831_44190956_44192378_44192525_44192693_44192745_44192855_44192989_44193100
ONT_simulated_read_19034131	chr4	-	3072	11	ISM	ENSMUSG00000037443.14	ENSMUST00000040271.12	3893	14	30740	431	30609	-423	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTATCTGGTTATTTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	133883683	133857599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987
ONT_simulated_read_19035071	chr17	+	343	2	ISM	ENSMUSG00000007029.17	ENSMUST00000087315.14	4137	30	64	14750	-23	-14750	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCCCCGAGCAGCCGGAC	NA	NA	NA	NA	NA	NA	NA	NA	35220026	35220548	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35220209_35220387
ONT_simulated_read_19045943	chr5	+	1146	8	ISM	ENSMUSG00000056310.15	ENSMUST00000040213.13	3044	16	0	63591	0	223	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAACCCAGAGAAGACTGAG	NA	NA	NA	NA	NA	NA	NA	NA	130285875	130306813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773
ONT_simulated_read_19046060	chr6	-	1960	2	ISM	ENSMUSG00000037788.15	ENSMUST00000127485.8	2908	5	62564	602	62564	-602	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGCAACCATCAGCACACA	NA	NA	NA	NA	NA	NA	NA	NA	57739557	57705393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_57707216_57739419
ONT_simulated_read_19049274	chr4	+	888	6	ISM	ENSMUSG00000089945.14	ENSMUST00000150412.4	5163	9	152	39736	152	-39736	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGCATCCGGTAGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	57637974	57854982	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_57638091_57647989_57648121_57688415_57688531_57689522_57689545_57757600_57757684_57854561
ONT_simulated_read_1904974	chr7	-	2395	6	ISM	ENSMUSG00000030849.19	ENST00000684153.1	4203	16	88299	-36	31823	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTCGTGTCTTACCAAATG	NA	NA	NA	NA	NA	NA	NA	NA	129779596	129764180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_129765946_129769432_129769539_129771468_129771607_129773341_129773413_129774546_129774670_129779404
ONT_simulated_read_19050116	chr7	-	120	1	NIC	ENSMUSG00000108949.2	novel	317	3	NA	NA	652	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGAGCTATCCTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	6285957	6285837	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_6285800_6286000
ONT_simulated_read_19050853	chr6	-	719	6	ISM	ENSMUSG00000025701.13	ENSMUST00000026795.13	2821	14	45615	2514	45461	-1872	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGGGCCCCACCACCCACG	NA	NA	NA	NA	NA	NA	NA	NA	116392524	116389551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_116389592_116390082_116390184_116390402_116390525_116390698_116390878_116391483_116391571_116392334
ONT_simulated_read_19056277	chr11	-	1770	11	ISM	ENSMUSG00000000751.14	ENSMUST00000000767.6	2942	18	32072	577	32072	-577	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTCCTCCTGGGGGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	75207064	75191752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930
ONT_simulated_read_19056732	chr2	+	1009	5	ISM	ENSMUSG00000074923.11	ENSMUST00000099557.10	4411	11	459	7939	459	-7936	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGGGTGCCTCACAACG	NA	NA	NA	NA	NA	NA	NA	NA	118494242	118520562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_118494505_118495263_118495348_118508203_118508310_118519277_118519487_118520214
ONT_simulated_read_19058295	chr10	-	1643	1	FSM	ENSMUSG00000074748.4	ENSMUST00000099276.4	3566	1	0	1923	0	-1923	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTTAATGCTAAGAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	112764900	112763257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_112763300_112764900
ONT_simulated_read_19059296	chr3	+	1979	9	ISM	ENSMUSG00000040389.16	ENST00000361054.7	3999	14	-21	12576	-21	-12576	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTGGTAGTTTATATGC	NA	NA	NA	NA	NA	NA	NA	NA	108498704	108540454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_108498914_108517192_108517360_108521648_108521734_108525805_108526609_108530641_108530766_108531872_108532052_108534518_108534777_108537007_108537084_108540376
ONT_simulated_read_190610	chr18	-	639	5	ISM	ENSMUSG00000063889.17	ENSMUST00000122958.8	2254	8	4411	1229	4304	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTTAACTATGAACTG	NA	NA	NA	NA	NA	NA	NA	NA	3295148	3267584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_3267733_3273421_3273579_3276693_3276730_3287903_3288093_3295039
ONT_simulated_read_1906165	chr16	-	1347	6	ISM	ENSMUSG00000022899.11	ENST00000489711.6	2927	21	28744	-4	28734	4	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCATGGGGACACAGGAATG	NA	NA	NA	NA	NA	NA	NA	NA	36576448	36571466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_36572317_36572633_36572739_36573354_36573502_36574057_36574155_36574803_36574915_36576411
ONT_simulated_read_19063116	chr3	+	709	6	ISM	ENSMUSG00000028030.13	ENSMUST00000169172.5	6578	26	56	126069	56	-126069	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCACAAGGAATTCCCAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	132389960	132421380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_132390156_132392532_132392754_132400143_132400217_132411273_132411389_132413545_132413620_132421349
ONT_simulated_read_1906719	chr6	-	389	1	NIC	ENSMUSG00000029553.11	novel	1787	7	NA	NA	10215	-1007	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTTCTGTAAGATGAGTT	NA	NA	NA	NA	NA	NA	NA	NA	16835262	16834873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_16834900_16835300
ONT_simulated_read_19072545	chr16	-	814	1	ISM	ENSMUSG00000005983.16	ENSMUST00000115859.8	2592	3	2405	1168	1418	327	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTCAGCTGGACTAGATT	NA	NA	NA	NA	NA	NA	NA	NA	3724148	3723334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_3723300_3724100
ONT_simulated_read_19072606	chr15	-	714	4	ISM	ENSMUSG00000023021.16	ENSMUST00000109035.11	2775	11	32954	1209	32954	-498	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATTATACATGTGTATTG	NA	NA	NA	NA	NA	NA	NA	NA	99637389	99633970	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_99634318_99635427_99635535_99636545_99636703_99637286
ONT_simulated_read_19073080	chr17	-	891	1	ISM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	19615	7218	19558	707	mono-exon	FALSE	NA	NA	NA	NA	NA	273	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCAGAAATCAGCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	30812018	30811127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_30811100_30812000
ONT_simulated_read_19079293	chr10	+	1093	8	ISM	ENSMUSG00000006498.17	ENSMUST00000165704.8	3169	13	4143	2240	-177	-1382	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCAGCTGGGTAAGGACCA	NA	NA	NA	NA	NA	NA	NA	NA	79694605	79698365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282
ONT_simulated_read_19080071	chr6	-	686	6	ISM	ENSMUSG00000030279.16	ENST00000396028.6	3343	26	70570	189	70551	-62	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAACTGGCTCAACCGAGT	NA	NA	NA	NA	NA	NA	NA	NA	142974942	142957724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_142957863_142958927_142959075_142963608_142963800_142965053_142965156_142966049_142966101_142974885
ONT_simulated_read_19080682	chr12	-	807	3	ISM	ENSMUSG00000062929.9	ENST00000672163.1	1410	4	343	360	196	-360	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	301	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGCTAACTGAATGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	54908619	54907601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_54908023_54908121_54908199_54908310
ONT_simulated_read_19084897	chr15	+	526	2	ISM	ENSMUSG00000033728.15	ENSMUST00000127208.8	4849	4	25	4572	20	-1908	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCAGCACAGAAAGCATGC	NA	NA	NA	NA	NA	NA	NA	NA	76594862	76597327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76595128_76597066
ONT_simulated_read_1908656	chr16	-	1552	7	ISM	ENSMUSG00000022960.14	ENSMUST00000023682.12	2365	10	4335	119	4330	-119	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAAGTGCTGGGCCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	91481323	91476271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_91476915_91478044_91478258_91478982_91479182_91479403_91479509_91479630_91479710_91480520_91480700_91481189
ONT_simulated_read_19087156	chr7	-	221	1	FSM	ENSMUSG00000108437.2	ENSMUST00000206996.2	156	1	0	-65	0	65	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAACATTTAAACCTGG	NA	NA	NA	NA	NA	NA	NA	NA	127612356	127612135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_127612100_127612400
ONT_simulated_read_19089051	chr11	-	1437	1	ISM	ENSMUSG00000078921.4	ENSMUST00000046745.7	2810	2	4469	1105	4469	-1105	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATGACAGCAAAGTATA	NA	NA	NA	NA	NA	NA	NA	NA	48950562	48949125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_48949100_48950600
ONT_simulated_read_19090100	chr17	+	815	7	ISM	ENSMUSG00000024158.18	ENSMUST00000118788.8	1191	9	0	3074	0	-3074	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATGCTGCCATTCAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	25069463	25080350	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_25069643_25071704_25071881_25072605_25072671_25075611_25075730_25076489_25076599_25079919_25080024_25080286
ONT_simulated_read_19090641	chrX	-	1210	9	ISM	ENSMUSG00000031400.11	ENSMUST00000004327.11	2652	13	15133	775	15133	-775	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTCCAGTACGAGGGTAC	NA	NA	NA	NA	NA	NA	NA	NA	73457667	73453863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_73453904_73454002_73454096_73454188_73454266_73454362_73454599_73454863_73455051_73455170_73455265_73455571_73455698_73455924_73456084_73457469
ONT_simulated_read_19092855	chr13	+	2078	1	ISM	ENSMUSG00000021366.9	ENSMUST00000060148.6	8753	9	105113	25815	33976	-25815	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATCTTAGTGACCCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	42310609	42312687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_42310600_42312700
ONT_simulated_read_19094183	chr9	-	219	1	ISM	ENSMUSG00000032405.11	ENSMUST00000098651.6	5564	14	98649	3644	98391	-274	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCCATCTTTGGCATCATA	NA	NA	NA	NA	NA	NA	NA	NA	62789512	62789293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_62789300_62789500
ONT_simulated_read_19094877	chr10	-	444	1	ISM	ENSMUSG00000020086.7	ENST00000677881.1	1626	6	18508	344	18508	-337	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACATAAAAATAGGCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	61575224	61574780	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_61574800_61575200
ONT_simulated_read_19095061	chr12	-	827	7	ISM	ENSMUSG00000001627.13	ENSMUST00000165027.9	1293	11	3408	557	3408	-557	internal_fragment	FALSE	canonical	NA	NA	NA	NA	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGGTTTTTGTTTGTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	40264104	40253917	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263976
ONT_simulated_read_19095747	chr17	+	1786	7	ISM	ENSMUSG00000067629.14	ENSMUST00000231853.2	4256	15	4940	8757	4940	-5522	internal_fragment	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTCCCCGGAGCCAAGC	NA	NA	NA	NA	NA	NA	NA	NA	27176799	27181338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_27176852_27177050_27177196_27178582_27178820_27178905_27179108_27179316_27179496_27180042_27180085_27180409
ONT_simulated_read_19097259	chr11	+	616	5	ISM	ENSMUSG00000018377.11	ENSMUST00000018521.11	4583	6	5309	3281	5309	-3281	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTACTCCATTCAATATA	NA	NA	NA	NA	NA	NA	NA	NA	87964413	87972274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_87964578_87965487_87965552_87967016_87967201_87969228_87969382_87972223
ONT_simulated_read_19097883	chr14	-	1008	1	NIC	ENSMUSG00000022114.6	novel	2087	2	NA	NA	3017	-848	mono-exon	FALSE	NA	NA	NA	NA	NA	521	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAGGAATATTGCAGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	106131236	106130228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_106130200_106131200
ONT_simulated_read_19100502	chr3	-	1735	6	ISM	ENSMUSG00000027962.15	ENST00000370119.8	2287	8	4159	141	4159	-141	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAAAGTTCTGCTTGACA	NA	NA	NA	NA	NA	NA	NA	NA	115918298	115904349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_115904687_115908001_115908269_115909533_115909801_115910871_115911193_115914446_115914723_115918031
ONT_simulated_read_1910415	chr14	-	476	4	ISM	ENSMUSG00000047911.7	ENSMUST00000062629.5	997	9	4672	0	4672	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCTCCCTCTGCCTCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	70885852	70884741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_70884990_70885076_70885111_70885484_70885526_70885699
ONT_simulated_read_19104894	chr6	+	714	7	ISM	ENSMUSG00000055912.9	ENSMUST00000069695.9	1546	8	779	639	779	-639	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTCCTCAGACACACTGG	NA	NA	NA	NA	NA	NA	NA	NA	72333208	72336106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_72333296_72333704_72333753_72334032_72334120_72334931_72335000_72335290_72335419_72335561_72335740_72335988
ONT_simulated_read_19105526	chr15	-	1315	4	ISM	ENSMUSG00000023009.15	ENSMUST00000023747.14	4853	13	33721	86	33721	-86	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGCGGTTAATTTATCT	NA	NA	NA	NA	NA	NA	NA	NA	99321908	99320001	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_99320790_99321016_99321160_99321246_99321556_99321833
ONT_simulated_read_19106685	chr3	+	216	1	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	0	29670	0	-29665	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACGAATTTCCGTTCGAGT	NA	NA	NA	NA	NA	NA	NA	NA	68912070	68912286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_68912100_68912300
ONT_simulated_read_19113801	chr5	+	1527	9	ISM	ENSMUSG00000029095.18	ENST00000361737.9	2623	15	29705	309	13715	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGTTTTACGGTCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	35985498	36041493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_35985527_35990396_35990475_35994291_35994442_35997133_35997167_35998624_35998746_36014471_36014525_36015169_36015309_36032176_36032258_36040649
ONT_simulated_read_19114913	chr3	+	441	1	FSM	ENSMUSG00000096544.3	ENSMUST00000178993.3	331	1	0	-110	0	110	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCGGGCAATGCCACCC	NA	NA	NA	NA	NA	NA	NA	NA	124179315	124179756	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_124179300_124179800
ONT_simulated_read_19114934	chr10	-	1422	8	ISM	ENSMUSG00000001783.4	ENSMUST00000001834.4	2009	12	8229	103	8229	-103	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	765	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAAGTCTGTAATCACCA	NA	NA	NA	NA	NA	NA	NA	NA	85785458	85774603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329
ONT_simulated_read_19116661	chr7	-	602	6	ISM	ENSMUSG00000030619.11	ENST00000528180.5	1733	10	10568	231	10184	-58	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCTCATAGCTGTCTGCG	NA	NA	NA	NA	NA	NA	NA	NA	89619639	89604202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_89604272_89604738_89604813_89605462_89605622_89616920_89617013_89618778_89618861_89619513
ONT_simulated_read_19117300	chr13	-	1548	1	ISM	ENSMUSG00000021301.10	ENSMUST00000110516.3	9460	29	292500	2741	203767	5	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACAAGTCTGAGAATGTAA	NA	NA	NA	NA	NA	NA	NA	NA	14405311	14403763	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_14403800_14405300
ONT_simulated_read_19117350	chr15	-	634	4	ISM	ENSMUSG00000001281.11	ENST00000550743.6	1981	12	2813	6651	2813	-6651	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTCTCCCGTCTTCTAGT	NA	NA	NA	NA	NA	NA	NA	NA	102133195	102131216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_102131235_102131765_102132008_102132736_102132908_102132992
ONT_simulated_read_19117628	chr4	-	3343	1	ISM	ENSMUSG00000028803.19	ENSMUST00000102549.10	5153	12	42069	320	41952	-320	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGGTCGGGGGGAGGTTG	NA	NA	NA	NA	NA	NA	NA	NA	135179865	135176522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_135176500_135179900
ONT_simulated_read_19117872	chr5	-	1537	13	ISM	ENSMUSG00000036980.14	ENST00000344095.8	2676	15	3289	483	3286	-483	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCTCTCCTGTCACCACC	NA	NA	NA	NA	NA	NA	NA	NA	138182181	138177366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100
ONT_simulated_read_19118	chr5	+	1121	6	ISM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	928	74	928	-74	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGCCTTTTACTGTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	121343471	121347230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
ONT_simulated_read_19120192	chr9	-	1348	6	ISM	ENSMUSG00000061536.14	ENSMUST00000111560.10	2669	7	9295	1207	9225	-1207	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCACAGGGTAAATTAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	121524800	121513306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_121513925_121514588_121514655_121517264_121517384_121519301_121519482_121521975_121522140_121524599
ONT_simulated_read_19120523	chr16	+	739	4	ISM	ENSMUSG00000022705.6	ENSMUST00000229953.2	1712	8	0	15477	0	-15389	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	169	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGGCTGTGTGGGTGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	43574388	43627818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_43574633_43582570_43582875_43610960_43611074_43627740
ONT_simulated_read_19121084	chr19	+	418	3	ISM	ENSMUSG00000054999.3	ENST00000340252.8	2334	17	2	9131	2	-9131	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAACCTTATGCTGCCTA	NA	NA	NA	NA	NA	NA	NA	NA	6155862	6156454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_6156028_6156115_6156289_6156374
ONT_simulated_read_19123909	chr17	+	1767	12	ISM	ENSMUSG00000024049.16	ENST00000356443.9	5185	37	67	61857	0	-61857	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTCACTGGCTTGATAGAA	NA	NA	NA	NA	NA	NA	NA	NA	71326554	71371507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_71326647_71329842_71330193_71341565_71341707_71343268_71343519_71344210_71344369_71351480_71351574_71352538_71352628_71352731_71352792_71354718_71354884_71359608_71359771_71368119_71368262_71371442
ONT_simulated_read_19124812	chr2	-	225	1	ISM	ENSMUSG00000017817.12	ENSMUST00000017961.11	4211	6	60055	1428	59989	-1428	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACCTCACCCTGCCACC	NA	NA	NA	NA	NA	NA	NA	NA	163179814	163179589	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_163179600_163179800
ONT_simulated_read_19125713	chr4	-	744	5	ISM	ENSMUSG00000029048.4	ENST00000378513.7	1298	6	3616	388	3616	-388	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCGAGGTGGGTGGCAACC	NA	NA	NA	NA	NA	NA	NA	NA	155167211	155159149	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_155159486_155160045_155160182_155161168_155161248_155165255_155165361_155167123
ONT_simulated_read_19126298	chr1	-	1305	1	ISM	ENSMUSG00000016481.16	ENSMUST00000193094.6	2776	10	32534	124	32513	-124	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGTCATTCAAAGAAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	194781118	194779813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_194779800_194781100
ONT_simulated_read_19126446	chr16	-	516	1	ISM	ENSMUSG00000038965.18	ENSMUST00000232139.2	2906	5	49733	388	48554	-386	mono-exon	FALSE	NA	NA	NA	NA	NA	233	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATTGCTTAGCTCTACC	NA	NA	NA	NA	NA	NA	NA	NA	16970780	16970264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_16970300_16970800
ONT_simulated_read_1913010	chr13	-	783	1	FSM	ENSMUSG00000007836.7	ENSMUST00000007980.7	2678	1	0	1895	0	-1895	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGGCGGCGGGGGTGCGCG	NA	NA	NA	NA	NA	NA	NA	NA	58276370	58275587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_58275600_58276400
ONT_simulated_read_19131823	chr5	-	819	1	NIC	ENSMUSG00000048578.12	novel	5955	5	NA	NA	10034	-4346	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGTCTGGGTTAATCTG	NA	NA	NA	NA	NA	NA	NA	NA	115286204	115285385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_115285400_115286200
ONT_simulated_read_19132683	chr10	-	418	1	FSM	ENSMUSG00000110960.2	ENSMUST00000214434.2	351	1	0	-67	0	67	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGACCCCAAAGACTCCC	NA	NA	NA	NA	NA	NA	NA	NA	31290161	31289743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_31289700_31290200
ONT_simulated_read_19133740	chr15	-	1221	1	ISM	ENSMUSG00000011960.13	ENSMUST00000169707.8	7397	10	26332	4682	23045	-160	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCACACAGGCCCCTGCAT	NA	NA	NA	NA	NA	NA	NA	NA	98442472	98441251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_98441300_98442500
ONT_simulated_read_19137146	chr4	-	1196	1	FSM	ENSMUSG00002074999.1	ENSMUST00020182372.1	125	1	0	-1071	0	1071	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCGGTTGCTCTTTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	45397118	45395922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_45395900_45397100
ONT_simulated_read_19138325	chr3	-	1454	6	ISM	ENSMUSG00000028020.17	ENSMUST00000029654.15	3029	10	51550	1094	49979	268	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTGCTCTTCAGCTACT	NA	NA	NA	NA	NA	NA	NA	NA	80769417	80751999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_80752565_80758214_80758508_80763091_80763245_80767467_80767609_80769009_80769093_80769198
ONT_simulated_read_1913936	chr14	-	1216	2	ISM	ENSMUSG00000022208.13	ENSMUST00000124493.2	3200	5	5763	407	5763	-407	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	142	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAACCAGTCCCTCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	55347246	55345140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55345853_55346742
ONT_simulated_read_19141420	chr4	-	1446	10	ISM	ENSMUSG00000028677.20	ENST00000372247.6	2896	15	6624	6117	6624	-5655	internal_fragment	FALSE	canonical	NA	NA	NA	NA	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTCCTGACCCAGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	117347490	117134778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222_117146266_117153328_117153431_117156741_117156788_117164742_117164876_117346785
ONT_simulated_read_19141826	chr13	-	126	2	ISM	ENSMUSG00000021676.11	ENST00000396234.7	3298	23	39566	37830	39566	-37830	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTAAGCTGATTTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	95804986	95802249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_95802265_95804875
ONT_simulated_read_19141987	chr6	+	951	6	ISM	ENSMUSG00000000440.13	ENST00000643197.2	1817	8	10538	17177	10538	-17177	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCCCTGGTTTCATTAAC	NA	NA	NA	NA	NA	NA	NA	NA	115360659	115449990	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_115360705_115416800_115417029_115418452_115418623_115427904_115428044_115440046_115440247_115449821
ONT_simulated_read_19142466	chr7	-	787	5	ISM	ENSMUSG00000001249.15	ENSMUST00000039435.15	1743	13	8344	142	8344	-123	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGGCCGGCCCACTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	30802078	30798291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_30798499_30798639_30798805_30798930_30799074_30799230_30799327_30801902
ONT_simulated_read_19143248	chr7	-	1102	9	ISM	ENSMUSG00000003438.18	ENSMUST00000081946.5	1515	11	1744	115	1720	-115	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	264	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAAGCCCCTCTCTCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	28009753	28005055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009503_28009526_28009720
ONT_simulated_read_19145699	chr12	-	1137	4	ISM	ENSMUSG00000021224.16	ENST00000559312.5	1413	8	44103	3	30983	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTCTCTGTGACAGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	83858134	83842212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_83842929_83850553_83850759_83854874_83855016_83858059
ONT_simulated_read_19145791	chr14	-	1189	1	FSM	ENSMUSG00000115801.2	ENSMUST00000226445.2	93147	1	40489	51469	40489	-51469	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTATTTTTGGACCACC	NA	NA	NA	NA	NA	NA	NA	NA	44834169	44832980	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_44833000_44834200
ONT_simulated_read_19147077	chr3	-	363	2	ISM	ENSMUSG00000027770.6	ENST00000308361.10	3334	24	4737	30784	4737	-30784	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACTGACCCTCGATAT	NA	NA	NA	NA	NA	NA	NA	NA	62409554	62408286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_62408490_62409394
ONT_simulated_read_19147477	chr9	-	668	1	ISM	ENSMUSG00000032503.19	ENSMUST00000070218.12	3181	19	119948	243	119768	0	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATAGAGTTTTCTTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	111895069	111894401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_111894400_111895100
ONT_simulated_read_1914764	chr19	-	511	1	ISM	ENSMUSG00000118087.2	ENSMUST00000235942.2	1764	2	1268	242	1262	-242	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTCTGGAGACCTCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	46292782	46292271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_46292300_46292800
ONT_simulated_read_19147758	chr2	-	289	3	ISM	ENSMUSG00000026896.15	ENST00000649979.2	3158	15	36663	8553	36663	-8553	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGTACAACGAAGCCCTA	NA	NA	NA	NA	NA	NA	NA	NA	62439645	62436752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_62436801_62437316_62437441_62439528
ONT_simulated_read_19150183	chr14	-	671	5	ISM	ENSMUSG00000021810.4	ENST00000454759.6	1748	12	3421	12619	3421	-12619	internal_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAATGACTACTTTAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	20393423	20383414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20383526_20386949_20387143_20388196_20388376_20388476_20388565_20393323
ONT_simulated_read_19151207	chrX	-	178	2	ISM	ENSMUSG00000079641.4	ENSMUST00000115231.4	612	3	1347	123	1347	-123	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATGGATTTCAACATTTA	NA	NA	NA	NA	NA	NA	NA	NA	36347708	36346295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_36346403_36347637
ONT_simulated_read_19151775	chr7	-	949	2	ISM	ENSMUSG00000030610.14	ENSMUST00000032839.13	2269	5	0	15999	0	-15999	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGATGACCTGCTCACTG	NA	NA	NA	NA	NA	NA	NA	NA	78497011	78493220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_78494013_78496854
ONT_simulated_read_19152884	chr3	+	353	1	NIC	ENSMUSG00000028137.10	novel	2505	14	NA	NA	0	-13005	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGAGCAGTTTGGTCGGA	NA	NA	NA	NA	NA	NA	NA	NA	94386137	94386490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_+_94386100_94386500
ONT_simulated_read_19153057	chr13	-	416	1	ISM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	80856	13823	11936	4365	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTTGCCTGGGATCAAT	NA	NA	NA	NA	NA	NA	NA	NA	99572192	99571776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_99571800_99572200
ONT_simulated_read_19153850	chr5	-	562	1	ISM	ENSMUSG00000037373.13	ENSMUST00000079746.10	2279	9	26335	375	26322	-73	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCACACTTCTCAGGACAAT	NA	NA	NA	NA	NA	NA	NA	NA	33406003	33405441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_33405400_33406000
ONT_simulated_read_1915619	chr3	+	543	4	ISM	ENSMUSG00000046519.16	ENSMUST00000177390.8	2836	5	56	9494	56	-9494	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCGAAACTGTGCAGACGT	NA	NA	NA	NA	NA	NA	NA	NA	95496300	95517059	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_95496446_95499027_95499217_95515216_95515349_95516982
ONT_simulated_read_19158998	chr9	+	1022	11	ISM	ENSMUSG00000032586.10	ENSMUST00000049348.9	2706	15	32	3626	26	-2296	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGAGATTGATCTCAATA	NA	NA	NA	NA	NA	NA	NA	NA	107828186	107845843	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107838855_107839452_107839541_107840029_107840120_107840527_107840617_107845792
ONT_simulated_read_19160613	chr10	-	1083	1	ISM	ENSMUSG00000040258.7	ENSMUST00000095266.3	1675	2	7609	395	7609	-395	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATAGGTGGGGCTTGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	127362819	127361736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_127361700_127362800
ONT_simulated_read_19163316	chr1	-	1278	1	ISM	ENSMUSG00000018417.15	ENSMUST00000046390.14	5052	30	164800	229	156045	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCATTTGCTGGATTACAA	NA	NA	NA	NA	NA	NA	NA	NA	51790430	51789152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_51789200_51790400
ONT_simulated_read_19164488	chr6	-	566	1	FSM	ENSMUSG00000082691.7	ENSMUST00000117045.2	342	1	0	-224	0	224	mono-exon	FALSE	NA	NA	NA	NA	NA	1543	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAAGTCTGCCGGTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	135326747	135326181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_135326200_135326700
ONT_simulated_read_19167315	chr4	-	506	2	ISM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	5767	9792	5767	-9792	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTTTCCGGGAGCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	107104962	107100502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_107100537_107104490
ONT_simulated_read_19169740	chr9	+	768	7	ISM	ENSMUSG00000034973.17	ENSMUST00000034987.15	8933	37	57414	4030	57414	-2851	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAAAGTTTAGGAGGGTT	NA	NA	NA	NA	NA	NA	NA	NA	86424873	86433829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_86424938_86425061_86425124_86427293_86427447_86430222_86430360_86430853_86430910_86432055_86432221_86433698
ONT_simulated_read_19172317	chr15	-	792	1	ISM	ENSMUSG00000055762.17	ENSMUST00000154584.9	2312	8	13764	595	13679	0	mono-exon	FALSE	NA	NA	NA	NA	NA	389	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAACCACCTGCCTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	75767440	75766648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75766600_75767400
ONT_simulated_read_19173055	chr8	+	1909	16	ISM	ENSMUSG00000031626.19	ENST00000448662.6	4035	18	17393	1771	17393	177	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAGGAAAAAAAGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	46216144	46279171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_46216229_46222865_46222933_46223582_46223628_46225570_46225746_46228625_46228741_46238305_46238363_46243012_46243063_46245817_46246006_46252746_46252836_46254001_46254049_46256668_46256784_46256869_46256999_46258689_46258891_46272755_46272806_46276765_46276873_46278781
ONT_simulated_read_19173946	chr12	+	1483	7	ISM	ENSMUSG00000042700.17	ENST00000358550.6	6578	21	2817	53585	1502	-50444	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTATGAGCGGGGAGAATG	NA	NA	NA	NA	NA	NA	NA	NA	82389040	82443459	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966
ONT_simulated_read_19176723	chr4	-	236	2	ISM	ENSMUSG00000028975.17	ENSMUST00000103217.11	2006	9	136359	1100	136359	-1100	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACAGCCCGGAGGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	149047974	149046091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_149046252_149047898
ONT_simulated_read_1917699	chr2	-	411	1	ISM	ENSMUSG00000009216.8	ENSMUST00000151224.3	2959	3	29603	2098	10043	1	mono-exon	FALSE	NA	NA	NA	NA	NA	304	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTCTATCCTGCCGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	27002900	27002489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_27002500_27002900
ONT_simulated_read_19179860	chr1	-	1457	7	ISM	ENSMUSG00000090272.10	ENSMUST00000188804.7	2026	10	4445	3013	0	-3013	internal_fragment	TRUE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGAAAAGAGAAAGAGGACA	NA	NA	NA	NA	NA	NA	NA	NA	173703426	173687798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_173687931_173690026_173690450_173692964_173693124_173698943_173699112_173700417_173700586_173701916_173702039_173703141
ONT_simulated_read_19180742	chr5	-	772	6	ISM	ENSMUSG00000029472.14	ENSMUST00000197074.5	2413	17	20647	3885	20647	-3877	internal_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCCAATGTGGGTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	122938696	122929670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513
ONT_simulated_read_19181383	chr11	-	1065	4	ISM	ENSMUSG00000042032.14	ENSMUST00000040167.11	1949	7	7966	251	7966	-251	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	302	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTTTAAACGCTTGATT	NA	NA	NA	NA	NA	NA	NA	NA	40575635	40570391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508
ONT_simulated_read_19182388	chr1	-	1191	10	FSM	ENSMUSG00000026721.17	ENST00000367687.5	1673	10	63	419	63	-359	multi-exon	FALSE	canonical	NA	NA	NA	NA	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCTTTGATGGATGACA	NA	NA	NA	NA	NA	NA	NA	NA	160269474	160051663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_160051939_160054054_160054253_160059365_160059438_160064195_160064280_160066100_160066206_160075028_160075140_160085012_160085106_160169605_160169735_160219751_160219794_160269392
ONT_simulated_read_19182469	chr9	-	498	1	NIC	ENSMUSG00000032047.6	novel	3405	12	NA	NA	27716	-1647	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGCCAAGAATACACATAGA	NA	NA	NA	NA	NA	NA	NA	NA	53493966	53493468	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_53493500_53494000
ONT_simulated_read_19183144	chr19	+	2001	15	ISM	ENSMUSG00000025225.16	ENSMUST00000111881.4	3141	22	0	2076	0	-2046	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGCTCTCCGGGCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	46294134	46298390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_46294464_46294721_46294804_46294924_46294966_46295209_46295309_46295380_46295533_46295802_46295910_46295998_46296158_46296394_46296500_46296611_46296698_46296783_46296923_46297067_46297194_46297303_46297514_46297593_46297736_46298093_46298209_46298281
ONT_simulated_read_19185177	chr17	-	1184	7	ISM	ENSMUSG00000023980.8	ENSMUST00000233174.2	1263	8	869	0	23	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTTATTTATTATTATA	NA	NA	NA	NA	NA	NA	NA	NA	47812343	47794288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_47794760_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208
ONT_simulated_read_19186851	chr5	-	1190	4	ISM	ENSMUSG00000029580.15	ENSMUST00000167721.8	1242	5	1011	0	-3	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTGTCTTTTTTTAATA	NA	NA	NA	NA	NA	NA	NA	NA	142891446	142889255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142891318
ONT_simulated_read_19187209	chr7	+	2056	8	ISM	ENSMUSG00000030852.19	ENST00000369004.7	3627	17	-15	23917	0	-20581	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTACCTTATGTTTGACA	NA	NA	NA	NA	NA	NA	NA	NA	130294494	130342598	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_130294718_130318432_130318570_130330252_130331559_130333260_130333297_130335235_130335297_130336678_130336881_130341541_130341604_130342569
ONT_simulated_read_19188449	chr11	+	1492	5	ISM	ENSMUSG00000034773.17	ENSMUST00000100392.5	2547	10	0	5790	0	-5771	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACGAGGGAGACCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	102139707	102150223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_102139919_102141504_102141556_102145779_102146848_102148712_102148797_102150145
ONT_simulated_read_19194227	chr5	-	163	1	ISM	ENSMUSG00000041697.9	ENSMUST00000040154.9	571	3	3057	120	3057	-120	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGATGCTAAGCTCGTGT	NA	NA	NA	NA	NA	NA	NA	NA	115483983	115483820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_115483800_115484000
ONT_simulated_read_19195452	chr19	-	487	4	ISM	ENSMUSG00000003555.9	ENST00000638190.1	1268	6	2154	270	2154	-270	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAAGCCATCTCATTACA	NA	NA	NA	NA	NA	NA	NA	NA	46659171	46656029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_46656048_46656452_46656557_46657110_46657281_46658976
ONT_simulated_read_19196997	chr5	-	338	2	ISM	ENSMUSG00000070733.14	ENSMUST00000094700.11	9852	60	75234	49928	75234	-49928	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCAAAACCCTCATGGAG	NA	NA	NA	NA	NA	NA	NA	NA	73230245	73228481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_73228653_73230078
ONT_simulated_read_19200331	chr3	-	1076	8	ISM	ENSMUSG00000028017.8	ENST00000509793.5	2910	19	4057	25164	4057	-25164	internal_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACTTTGTACTGGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	129529634	129504996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_129505126_129506602_129506708_129510278_129510428_129511572_129511710_129512705_129512832_129513879_129514003_129516918_129517042_129529450
ONT_simulated_read_19201711	chr9	-	2321	1	ISM	ENSMUSG00000033350.8	ENSMUST00000036267.8	7328	2	269	4841	269	-4841	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATGTGAGTATTAATAAAG	NA	NA	NA	NA	NA	NA	NA	NA	95288506	95286185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_95286200_95288500
ONT_simulated_read_19203444	chr17	-	1580	1	ISM	ENSMUSG00000023912.11	ENSMUST00000024705.6	2895	9	23540	204	23458	-204	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTTGCATCTGTCAGC	NA	NA	NA	NA	NA	NA	NA	NA	43954565	43952985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_43953000_43954600
ONT_simulated_read_19205173	chr11	-	514	1	NIC	ENSMUSG00000020358.18	novel	2370	7	NA	NA	4975	-185	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGAGTGAACACAATTATGT	NA	NA	NA	NA	NA	NA	NA	NA	51492699	51492185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_51492200_51492700
ONT_simulated_read_19205358	chr13	-	755	1	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	20139	515	20139	-515	mono-exon	FALSE	NA	NA	NA	NA	NA	279	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTCAAAAACTGGGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	47239527	47238772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_47238800_47239500
ONT_simulated_read_192072	chr16	-	700	3	ISM	ENSMUSG00000022749.9	ENST00000475134.1	1874	17	45303	-301	45303	301	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	195	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGGTTTTAAAACAACTGT	NA	NA	NA	NA	NA	NA	NA	NA	56993488	56990400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_56990804_56991985_56992181_56993386
ONT_simulated_read_19210608	chr7	+	1312	6	ISM	ENSMUSG00000045795.11	ENST00000611636.4	1558	8	-38	2678	0	-2678	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCAGAGCCTGGCTCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	81221039	81239135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_81221658_81224293_81224451_81227898_81228050_81234849_81235020_81235881_81236048_81239085
ONT_simulated_read_19210638	chr13	-	946	5	ISM	ENSMUSG00000021546.19	ENSMUST00000177497.8	2585	12	3885	596	3885	115	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	116	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACCTCTTGGACATAGAC	NA	NA	NA	NA	NA	NA	NA	NA	58541984	58539648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889
ONT_simulated_read_19210826	chr15	+	491	6	ISM	ENSMUSG00000033287.17	ENST00000402077.7	1254	8	1429	1323	396	-896	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGACCCAAGCCTGAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	78314285	78321801	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321100_78321195_78321783
ONT_simulated_read_19211067	chr8	-	2101	1	NIC	ENSMUSG00000031539.7	novel	3417	9	NA	NA	16150	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATGTCTGGTTACTGAG	NA	NA	NA	NA	NA	NA	NA	NA	23279470	23277369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_23277400_23279500
ONT_simulated_read_19211950	chr1	-	1808	6	ISM	ENSMUSG00000026341.17	ENSMUST00000178474.8	2565	12	29558	-1	29387	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	167	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATGGTTTTTCTTCGTGC	NA	NA	NA	NA	NA	NA	NA	NA	125333726	125320641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581
ONT_simulated_read_1921537	chr13	+	2294	1	ISM	ENSMUSG00000021413.10	ENSMUST00000077853.5	7844	15	26347	2122	26347	-2122	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTGATTTCCACTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	35085631	35087925	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_35085600_35087900
ONT_simulated_read_19217215	chr7	-	260	3	ISM	ENSMUSG00000060538.15	ENSMUST00000120007.8	1087	5	5765	65	5765	-63	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAGAAGACCTATTACAAA	NA	NA	NA	NA	NA	NA	NA	NA	126490831	126485454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126485488_126488062_126488233_126490774
ONT_simulated_read_19217395	chr11	-	1456	1	NIC	ENSMUSG00000005949.10	novel	2570	11	NA	NA	3734	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTCGGAACGTTTACTAG	NA	NA	NA	NA	NA	NA	NA	NA	73075878	73074422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_73074400_73075900
ONT_simulated_read_19217490	chr16	+	980	4	ISM	ENSMUSG00000022721.20	ENSMUST00000100099.10	2235	12	0	2597	0	-2597	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGGTGGAACATGTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	18066925	18068769	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_18067163_18067349_18067898_18068317_18068427_18068683
ONT_simulated_read_19223204	chr7	-	309	1	ISM	ENSMUSG00000004473.11	ENSMUST00000004587.11	2978	4	1934	1973	1797	-119	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGATCAGCCCAATGGCGGC	NA	NA	NA	NA	NA	NA	NA	NA	43954392	43954083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_43954100_43954400
ONT_simulated_read_19226340	chr16	-	400	4	ISM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	5226	4350	5141	-3688	internal_fragment	FALSE	canonical	NA	NA	NA	NA	145	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTCAGTAAGGGAGAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	87287535	87284563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_87284601_87285694_87285833_87287208_87287271_87287372
ONT_simulated_read_19226741	chr15	-	479	1	ISM	ENSMUSG00000039942.16	ENSMUST00000120563.2	3312	3	8975	1320	8975	-1320	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGAGAGGAGCCTGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	5264678	5264199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_5264200_5264700
ONT_simulated_read_19229881	chr4	-	3115	11	ISM	ENSMUSG00000037443.14	ENSMUST00000121566.8	3748	14	30609	374	30609	-374	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCCTGTATGTATGAGG	NA	NA	NA	NA	NA	NA	NA	NA	133883683	133857550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881702_133882987
ONT_simulated_read_19232952	chr4	-	1117	7	ISM	ENSMUSG00000028245.16	ENSMUST00000029910.12	3507	31	45113	135	45113	-135	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTTTCGGCAGTGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	6409158	6396341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_6396818_6398318_6398429_6398544_6398648_6398808_6398960_6406786_6406871_6408557_6408682_6409089
ONT_simulated_read_19234085	chr16	-	433	1	ISM	ENSMUSG00000049502.18	ENSMUST00000081933.14	5309	5	5354	6854	5354	-1505	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACGTAGAAGAAGCAAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	35754167	35753734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_35753700_35754200
ONT_simulated_read_19238042	chr16	-	1348	9	ISM	ENSMUSG00000022822.17	ENSMUST00000115547.9	5372	31	27387	43705	6937	25750	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGACACCCCCAGTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	20217698	20193760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_20193885_20195260_20195465_20197196_20197270_20197391_20197517_20208118_20208191_20211200_20211558_20214764_20214873_20215729_20215879_20217562
ONT_simulated_read_19240755	chr17	+	1416	1	FSM	ENSMUSG00000071035.6	ENSMUST00000090731.7	885	1	0	-531	0	531	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGAGTTCAATTCCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	87385698	87387114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_87385700_87387100
ONT_simulated_read_19242812	chr5	-	1117	5	ISM	ENSMUSG00000059866.14	ENSMUST00000087737.10	1987	6	10183	478	10130	-435	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGTCACTGGAAGGTCATC	NA	NA	NA	NA	NA	NA	NA	NA	34661152	34653908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_34654295_34656523_34656644_34656831_34657081_34658251_34658342_34660880
ONT_simulated_read_19245061	chr3	-	1365	1	ISM	ENSMUSG00000027778.16	ENSMUST00000107812.8	4063	20	110392	288	100386	-262	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCACCCCTTTCCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	68801484	68800119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_68800100_68801500
ONT_simulated_read_19245381	chr10	-	464	5	ISM	ENSMUSG00000019868.17	ENST00000620996.4	1095	6	2733	503	2733	-503	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCTGACCCCGGAGGACT	NA	NA	NA	NA	NA	NA	NA	NA	14560719	14531582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_14531590_14543675_14543853_14551677_14551787_14559807_14559884_14560624
ONT_simulated_read_19246313	chr14	-	608	5	NIC	ENSMUSG00000022090.11	novel	1523	10	NA	NA	2879	-109	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCTACTCTATGCCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	70409052	70402104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_70402243_70403538_70403657_70405109_70405238_70405413_70405494_70408908
ONT_simulated_read_19247300	chr11	+	729	3	ISM	ENSMUSG00000059248.14	ENSMUST00000093907.11	3616	12	0	71369	0	-65753	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGGCCCCGATGTCTCAAC	NA	NA	NA	NA	NA	NA	NA	NA	117090486	117181782	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_117090600_117109700_117109758_117181223
ONT_simulated_read_19249614	chr10	-	1130	1	ISM	ENSMUSG00000047712.9	ENSMUST00000061601.9	4228	8	311192	1695	311177	-842	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATTTTTCATTCCTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	8083397	8082267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_8082300_8083400
ONT_simulated_read_19250093	chrX	-	1398	1	ISM	ENSMUSG00000025658.17	ENSMUST00000026750.15	5738	22	219484	977	172874	-838	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTCTTGACATATTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	156606806	156605408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_156605400_156606800
ONT_simulated_read_19252480	chr9	-	1265	1	ISM	ENSMUSG00000032257.7	ENSMUST00000034792.7	2714	8	10179	384	10087	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACCCCAGGCAGAAGATT	NA	NA	NA	NA	NA	NA	NA	NA	49328142	49326877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_49326900_49328100
ONT_simulated_read_19252648	chr8	-	269	1	ISM	ENSMUSG00000110340.2	ENSMUST00000209501.2	489	3	3388	0	3388	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTAACTCAGATGTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	104070778	104070509	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_104070500_104070800
ONT_simulated_read_19256563	chr5	+	801	6	ISM	ENSMUSG00000029439.15	ENSMUST00000053737.9	3313	18	49557	331	49557	-331	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGCATCCTGAGACGGC	NA	NA	NA	NA	NA	NA	NA	NA	129627841	129648117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_129627952_129631506_129631773_129637743_129637870_129646704_129646879_129647539_129647613_129648065
ONT_simulated_read_19256983	chr9	-	1510	7	ISM	ENSMUSG00000034533.11	ENSMUST00000214408.2	5877	27	46114	18217	46114	-18183	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGGTAGCTTATGGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	119477277	119456207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_119456311_119459150_119459306_119460520_119460645_119462806_119462948_119464508_119464962_119467501_119467862_119477103
ONT_simulated_read_19257556	chr7	-	664	1	NIC	ENSMUSG00000008435.16	novel	3034	7	NA	NA	17846	-1473	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTGGTGGACTGATTGG	NA	NA	NA	NA	NA	NA	NA	NA	4430802	4430138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_4430100_4430800
ONT_simulated_read_19258333	chr7	-	277	1	Genic_Genomic	ENSMUSG00000064307.14	novel	NA	NA	NA	NA	2561	3	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCACAGTGAAGGCAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	101562415	101562138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr7_-_101562100_101562400
ONT_simulated_read_19259965	chr11	+	604	6	ISM	ENSMUSG00000018882.13	ENSMUST00000019026.10	2431	8	192	3011	192	-3011	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCGCCTACACACTCGGC	NA	NA	NA	NA	NA	NA	NA	NA	97206733	97217735	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607
ONT_simulated_read_19261237	chr6	+	328	1	ISM	ENSMUSG00000002416.14	ENSMUST00000135671.8	4371	4	9207	1274	9198	-1274	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCAGGGACTTAAAGACA	NA	NA	NA	NA	NA	NA	NA	NA	39578714	39579042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_39578700_39579000
ONT_simulated_read_19261354	chr6	+	1497	7	ISM	ENSMUSG00000038836.16	ENSMUST00000115017.8	3719	19	457	58087	0	14126	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACACATCGCTCCTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	34757823	34776780	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_34757995_34759034_34759154_34760504_34760566_34762125_34762312_34770816_34770925_34775128_34775268_34776067
ONT_simulated_read_19265626	chr11	+	862	5	ISM	ENSMUSG00000017390.16	ENSMUST00000102478.4	1700	8	865	241	865	-62	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAGGGTAGAGATGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	78215890	78217345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_78216036_78216154_78216239_78216467_78216643_78216760_78216961_78217087
ONT_simulated_read_19266796	chr10	+	1230	5	ISM	ENSMUSG00000020034.8	ENSMUST00000020223.8	2725	10	18027	317	18027	-317	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGACTTGTTCATTCAA	NA	NA	NA	NA	NA	NA	NA	NA	84430516	84449906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_84430649_84440370_84440553_84440749_84440932_84444328_84444502_84449345
ONT_simulated_read_19266946	chr5	-	1631	3	ISM	ENSMUSG00000016510.12	ENSMUST00000016654.9	2131	5	4533	253	4495	-253	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGGGTAACTGAATCTAC	NA	NA	NA	NA	NA	NA	NA	NA	146896064	146891582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_146892626_146893596_146893755_146895634
ONT_simulated_read_19267292	chr19	-	175	1	ISM	ENSMUSG00000024972.17	ENSMUST00000159983.8	2470	10	9022	1337	6230	0	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGGAGGGGCGGCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	7575536	7575361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_7575400_7575500
ONT_simulated_read_19270458	chr12	-	772	5	ISM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	466	0	370	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	4430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTTATGTCCTATTCTG	NA	NA	NA	NA	NA	NA	NA	NA	28685486	28680852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414
ONT_simulated_read_19271406	chr9	-	352	3	ISM	ENSMUSG00000001948.11	ENSMUST00000002013.11	696	5	70	4326	70	-4326	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGTCTTATGAACCTACC	NA	NA	NA	NA	NA	NA	NA	NA	37524948	37518911	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_37518984_37523131_37523315_37524851
ONT_simulated_read_19275478	chr8	-	1098	9	ISM	ENSMUSG00000031711.8	ENSMUST00000034147.4	1675	10	1148	474	1148	-474	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	205	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTTGCAGTGTACGTAA	NA	NA	NA	NA	NA	NA	NA	NA	83499641	83490723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508
ONT_simulated_read_19277555	chr16	-	1417	1	ISM	ENSMUSG00000022964.15	ENSMUST00000023686.15	2347	7	21652	229	7241	-229	mono-exon	FALSE	NA	NA	NA	NA	NA	234	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGTCTATGAAGGGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	91373036	91371619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_91371600_91373000
ONT_simulated_read_19277946	chr7	-	1121	4	ISM	ENSMUSG00000030956.16	ENSMUST00000065371.14	5052	5	7545	3868	-2458	-2587	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCTCCCAGAGCCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	132381103	132317680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_132317732_132361117_132361897_132373306_132373359_132380864
ONT_simulated_read_19281109	chr9	+	447	3	NIC	ENSMUSG00000096385.8	novel	684	5	NA	NA	0	0	intron_retention	TRUE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTCCATGTCCTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	3003579	3005194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_3003698_3004571_3004776_3005069
ONT_simulated_read_19282575	chr8	-	565	4	ISM	ENSMUSG00000039375.17	ENST00000507824.6	3915	29	7554	57881	36	-332	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTGGCTAATTTGCATT	NA	NA	NA	NA	NA	NA	NA	NA	55149398	55140706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_55140762_55143038_55143270_55146091_55146276_55149303
ONT_simulated_read_19282790	chr10	-	1070	1	ISM	ENSMUSG00000020063.17	ENST00000406900.5	3126	7	10860	884	5908	-828	mono-exon	FALSE	NA	NA	NA	NA	NA	661	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAGCCTGCATAGATCTT	NA	NA	NA	NA	NA	NA	NA	NA	63156734	63155664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_63155700_63156700
ONT_simulated_read_19283295	chr13	+	841	1	ISM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	28573	395	28358	-395	mono-exon	FALSE	NA	NA	NA	NA	NA	278	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAGTTTAACAAGCATTT	NA	NA	NA	NA	NA	NA	NA	NA	3616635	3617476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_3616600_3617500
ONT_simulated_read_19283547	chr14	-	1119	4	ISM	ENSMUSG00000002320.16	ENSMUST00000002391.15	2382	5	1741	527	1652	-527	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTGCCACAGTCTGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	55879056	55874043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423
ONT_simulated_read_19285432	chr4	+	422	1	ISM	ENSMUSG00000010517.8	ENST00000396153.7	4728	20	3	287371	0	-286951	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGCTCGGCGGCCGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	109533784	109534206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_109533800_109534200
ONT_simulated_read_19286611	chr9	+	1630	8	ISM	ENSMUSG00000032077.6	ENSMUST00000074957.5	2539	10	0	6991	0	-6991	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAAGCCTCTGGCCCGCT	NA	NA	NA	NA	NA	NA	NA	NA	46194305	46203417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_46194472_46197640_46197732_46198314_46198400_46198959_46199734_46201423_46201642_46202605_46202709_46202992_46203132_46203363
ONT_simulated_read_19287794	chr11	-	867	6	ISM	ENSMUSG00000004393.11	ENST00000431640.5	1368	11	143	2581	143	-2581	internal_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTCCACCACGTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	6217580	6214201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_6214238_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417
ONT_simulated_read_19292121	chr5	-	715	5	ISM	ENSMUSG00000045078.13	ENSMUST00000200607.5	3704	17	44591	895	30056	-895	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACGTGCCCCTGGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	143054144	142978469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071
ONT_simulated_read_19293213	chr3	-	627	5	ISM	ENSMUSG00000040412.18	ENST00000529753.5	2888	20	44358	22964	44358	-22964	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAGAAACATCGCCATAAC	NA	NA	NA	NA	NA	NA	NA	NA	108399435	108388601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_108388686_108389097_108389179_108389646_108389795_108396145_108396339_108399314
ONT_simulated_read_1929322	chr9	+	1058	12	ISM	ENSMUSG00000032322.15	ENSMUST00000059206.8	1863	15	30325	160	30306	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAGTCTCCACATACCTC	NA	NA	NA	NA	NA	NA	NA	NA	56027570	56036012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_56027620_56027830_56027938_56030042_56030106_56030545_56030645_56031031_56031078_56031877_56031958_56032407_56032507_56033210_56033308_56033865_56033957_56034768_56034822_56035010_56035145_56035872
ONT_simulated_read_19295222	chr10	+	919	8	ISM	ENSMUSG00000038010.10	ENST00000295124.9	2360	15	-22	47852	0	-47852	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGCCAAAAGGGTCCAAGC	NA	NA	NA	NA	NA	NA	NA	NA	58333769	58364183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_58333885_58335183_58335242_58343342_58343464_58345326_58345455_58348900_58349080_58359959_58360119_58363163_58363284_58364144
ONT_simulated_read_19295660	chr2	+	768	5	ISM	ENSMUSG00000026991.21	ENSMUST00000112577.8	4222	21	92867	15951	10920	-15203	internal_fragment	FALSE	canonical	NA	NA	NA	NA	2501	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGATGTTTCCTCCTATA	NA	NA	NA	NA	NA	NA	NA	NA	59152959	59169598	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424
ONT_simulated_read_19296189	chr13	-	1350	1	ISM	ENSMUSG00000021469.10	ENSMUST00000021922.10	2453	2	4481	360	4481	-360	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATGCCTTCTCTCTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	53622629	53621279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_53621300_53622600
ONT_simulated_read_19297676	chr7	+	1093	1	FSM	ENSMUSG00000109904.2	ENSMUST00000210940.2	1751	1	0	658	0	-658	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAGCAGAGAATGCTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	109719196	109720289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_109719200_109720300
ONT_simulated_read_19297964	chr6	+	978	8	ISM	ENSMUSG00000068328.10	ENSMUST00000092618.9	1769	12	125	1164	125	-1164	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	193	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGATCTGGGCACAAA	NA	NA	NA	NA	NA	NA	NA	NA	83031626	83033625	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522
ONT_simulated_read_19299230	chr17	-	1015	1	ISM	ENSMUSG00000002249.22	ENSMUST00000154873.9	2775	13	17556	105	17556	-62	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCACTCAAGGCCTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	28551764	28550749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_28550700_28551800
ONT_simulated_read_19301105	chr18	-	737	4	ISM	ENSMUSG00000024386.10	ENST00000409048.1	1349	5	1754	176	1754	-176	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGGCATCATTGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	32266313	32256510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_32256870_32258147_32258266_32260445_32260592_32266199
ONT_simulated_read_1930327	chr11	-	927	7	ISM	ENSMUSG00000034187.19	ENSMUST00000103075.11	3766	21	43462	40218	43462	-40218	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAAGTGGGGTGACCCCG	NA	NA	NA	NA	NA	NA	NA	NA	103801420	103752825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268
ONT_simulated_read_19303602	chr15	-	617	1	ISM	ENSMUSG00000022206.8	ENSMUST00000066529.5	6892	8	60370	4757	60370	-270	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACATTCAGGTCTGAATTC	NA	NA	NA	NA	NA	NA	NA	NA	11845355	11844738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_11844700_11845400
ONT_simulated_read_19307256	chr13	-	2303	12	ISM	ENSMUSG00000042167.7	ENSMUST00000048702.7	2990	15	7982	218	7982	-218	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAGTAATCTTGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	93320809	93283008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_93284174_93285388_93285469_93287191_93287284_93291432_93291570_93296152_93296197_93304433_93304563_93304898_93304976_93308330_93308401_93311147_93311227_93312026_93312119_93312205_93312321_93320586
ONT_simulated_read_1930795	chr19	-	569	1	ISM	ENSMUSG00000118087.2	ENSMUST00000235942.2	1764	2	848	604	842	-604	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCGGGTTCACAAGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	46293202	46292633	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_46292600_46293200
ONT_simulated_read_19308432	chr17	+	980	8	ISM	ENSMUSG00000024369.17	ENSMUST00000173357.8	1399	11	10	1973	0	-1973	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACATGACGCCCACCC	NA	NA	NA	NA	NA	NA	NA	NA	35069383	35073257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35069565_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196
ONT_simulated_read_19317950	chr16	-	165	1	ISM	ENSMUSG00000022505.10	ENSMUST00000078357.5	3440	5	29353	2702	29353	-2702	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATCCTGAGGAAGCGTAAA	NA	NA	NA	NA	NA	NA	NA	NA	10102479	10102314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_10102300_10102500
ONT_simulated_read_19318206	chr5	-	758	1	ISM	ENSMUSG00000029557.8	ENSMUST00000031536.8	1443	3	3156	311	3156	-311	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGGGAGACATTGATGAGT	NA	NA	NA	NA	NA	NA	NA	NA	140314497	140313739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_140313700_140314500
ONT_simulated_read_19319113	chr3	+	429	5	NIC	ENSMUSG00000028013.17	novel	460	5	NA	NA	11	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGACACAGGGCTTCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	133053836	133083637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_+_133053952_133073583_133073712_133076140_133076227_133079383_133079454_133083607
ONT_simulated_read_19319313	chr13	+	766	4	ISM	ENSMUSG00000078941.10	ENSMUST00000022135.15	1298	5	0	2162	0	-2162	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGGGAAAGAAGAAACACT	NA	NA	NA	NA	NA	NA	NA	NA	100787486	100800705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_100787954_100790698_100790792_100800402_100800462_100800558
ONT_simulated_read_19319842	chr5	-	273	1	NIC	ENSMUSG00000029455.15	novel	3867	13	NA	NA	12697	-1725	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTCCCTAAGCAGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	121706087	121705814	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_121705800_121706100
ONT_simulated_read_19323495	chr7	-	1887	12	ISM	ENSMUSG00000003363.16	ENSMUST00000117095.8	2282	14	10336	77	10336	-77	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	300	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCAGACCTTTGGCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	27242301	27231501	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168
ONT_simulated_read_19324006	chr13	+	2868	7	NIC	ENSMUSG00000021326.14	novel	4204	8	NA	NA	0	840	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGATAACAAGACTGTTGA	NA	NA	NA	NA	NA	NA	NA	NA	21364393	21377873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_+_21365085_21366153_21366250_21367901_21368133_21374024_21374141_21374261_21374295_21375389_21375417_21376199
ONT_simulated_read_19324755	chr17	+	1193	8	ISM	ENSMUSG00000007570.17	ENSMUST00000114804.11	1842	9	2081	284	2081	-284	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTCAGAACACACAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	28534626	28545258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28545125
ONT_simulated_read_19326116	chr3	-	331	1	ISM	ENSMUSG00000044080.10	ENSMUST00000060738.9	677	3	3028	0	2914	0	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAATGTCTGTACCCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	90418671	90418340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_90418300_90418700
ONT_simulated_read_19326938	chr16	-	691	6	ISM	ENSMUSG00000022858.17	ENSMUST00000023564.10	1369	8	676	738	676	2	internal_fragment	FALSE	canonical	NA	NA	NA	NA	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACCTTGATGGGTTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	22073321	22065935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157
ONT_simulated_read_19327913	chr1	-	416	2	ISM	ENSMUSG00000026094.15	ENSMUST00000027263.14	3293	8	24062	2030	24062	-2030	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCTTGCCCAGCCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	53800321	53796694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_53796930_53800140
ONT_simulated_read_19328057	chr2	-	1659	1	ISM	ENSMUSG00000033526.17	ENST00000360135.8	5323	27	38202	230	38202	102	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATATATATAAACATATATA	NA	NA	NA	NA	NA	NA	NA	NA	121142930	121141271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_121141300_121142900
ONT_simulated_read_19328359	chr7	-	959	1	ISM	ENSMUSG00000035401.10	ENSMUST00000205276.2	7693	20	65921	2763	63994	700	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGGAAATGCTCAGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	98240065	98239106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_98239100_98240100
ONT_simulated_read_19328879	chr11	-	2823	18	ISM	ENSMUSG00000018474.19	ENSMUST00000092971.13	6066	39	8616	7792	8616	-7792	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTCCGAGGAAGAGGATGA	NA	NA	NA	NA	NA	NA	NA	NA	69251601	69242968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69242992_69243372_69243551_69244013_69244181_69244489_69244722_69244887_69245013_69245190_69245309_69246164_69246297_69246456_69246599_69247032_69247207_69247361_69247484_69247763_69247902_69248190_69248392_69248530_69248723_69249068_69249169_69249952_69250085_69250652_69250865_69250997_69251202_69251370
ONT_simulated_read_1932964	chr11	-	1553	1	ISM	ENSMUSG00000044052.4	ENST00000332438.4	1642	3	792	12587	792	-102	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAGGCTGGAGGCAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	101065477	101063924	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_101063900_101065500
ONT_simulated_read_19331211	chr12	+	1440	6	ISM	ENSMUSG00000036257.16	ENSMUST00000043082.16	13507	10	21462	10440	8037	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATATGAAAAAACTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	44337392	44358875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_44337444_44342680_44342853_44346016_44346075_44351693_44351889_44354701_44354898_44358107
ONT_simulated_read_19333683	chr4	-	155	2	ISM	ENSMUSG00000014030.16	ENST00000523145.5	745	6	30881	35943	30881	-35943	internal_fragment	FALSE	canonical	NA	NA	NA	NA	607	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGGGAGACCTGTTCACAC	NA	NA	NA	NA	NA	NA	NA	NA	44679527	44645656	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_44645724_44679439
ONT_simulated_read_1933571	chr5	+	1707	2	ISM	ENSMUSG00000040367.3	ENSMUST00000044039.2	2951	6	14	15518	14	-15518	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGTTGAACTGAATTATA	NA	NA	NA	NA	NA	NA	NA	NA	3895186	3901078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_3895447_3899631
ONT_simulated_read_193391	chr9	-	310	3	FSM	ENSMUSG00000032508.9	ENST00000650112.2	585	3	275	0	275	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCCTGGGAGCCCTAGGT	NA	NA	NA	NA	NA	NA	NA	NA	119168757	119166418	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_119166577_119166819_119166912_119168697
ONT_simulated_read_19340014	chr2	-	149	1	ISM	ENSMUSG00000026880.12	ENSMUST00000028241.7	2787	7	20937	1905	20937	-1905	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCAGGGCATCATGGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	35206051	35205902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_35205900_35206100
ONT_simulated_read_1934207	chr9	+	679	3	NIC	ENSMUSG00000095547.2	novel	675	4	NA	NA	0	0	intron_retention	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTCCATGTCCTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	3017407	3019022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_3017611_3017786_3018138_3018897
ONT_simulated_read_19344752	chr1	-	464	1	NIC	ENSMUSG00000048402.15	novel	6637	14	NA	NA	30008	-1929	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGCTCCTGAGCGTGCAC	NA	NA	NA	NA	NA	NA	NA	NA	118765908	118765444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_118765400_118765900
ONT_simulated_read_19351062	chr1	+	1397	2	ISM	ENSMUSG00000013275.10	ENSMUST00000086559.7	4697	11	0	17875	0	-17875	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGACCTGAGGAGGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	131755714	131758728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_131756132_131757748
ONT_simulated_read_19353193	chr19	+	279	3	ISM	ENSMUSG00000024750.12	ENSMUST00000237651.2	7385	6	409	9800	409	-5250	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTAAACAACTGTGAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	21250050	21254404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_21250107_21253789_21253950_21254341
ONT_simulated_read_19353345	chr13	-	777	1	NIC	ENSMUSG00000021461.18	novel	3165	16	NA	NA	118929	146	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCTTCAATTCTCACAGT	NA	NA	NA	NA	NA	NA	NA	NA	63460579	63459802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_63459800_63460600
ONT_simulated_read_19357163	chr9	-	1723	1	ISM	ENSMUSG00000032507.16	ENSMUST00000035090.14	3464	15	47841	491	47841	-491	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAATCAGAAAACATTT	NA	NA	NA	NA	NA	NA	NA	NA	113807988	113806265	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_113806300_113808000
ONT_simulated_read_19360227	chr14	-	805	1	ISM	ENSMUSG00000022031.7	ENSMUST00000225355.2	2771	15	61465	334	54811	-334	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACATGGTCCAGAATCCA	NA	NA	NA	NA	NA	NA	NA	NA	65769036	65768231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_65768200_65769000
ONT_simulated_read_19367145	chr7	-	390	4	ISM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	3191	1409	790	-100	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTAGTGTGGCTGCCGC	NA	NA	NA	NA	NA	NA	NA	NA	117725694	117719522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618
ONT_simulated_read_19369247	chr8	-	570	1	NIC	ENSMUSG00000037070.11	novel	1695	2	NA	NA	2015	-1018	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGGGACCACTTCCAGTA	NA	NA	NA	NA	NA	NA	NA	NA	79233493	79232923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_79232900_79233500
ONT_simulated_read_19369466	chr9	-	962	1	NIC	ENSMUSG00000032400.19	novel	2957	19	NA	NA	34774	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGCCTGGTTTAATCTT	NA	NA	NA	NA	NA	NA	NA	NA	64045387	64044425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_64044400_64045400
ONT_simulated_read_19370371	chr6	+	595	4	ISM	ENSMUSG00000046947.13	ENSMUST00000140364.8	3542	8	1111	7678	1020	-6661	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCAGGGGGTCTGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	39551917	39558025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_39552141_39553296_39553444_39556596_39556726_39557929
ONT_simulated_read_1937200	chr6	+	1022	8	NIC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	410	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	124689728	124693913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_+_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692994_124693568
ONT_simulated_read_19374806	chr7	+	1144	1	ISM	ENSMUSG00000025326.13	ENSMUST00000200758.4	9856	13	80900	691	80900	-691	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTCCATTTATTTAGGT	NA	NA	NA	NA	NA	NA	NA	NA	58959449	58960593	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_58959400_58960600
ONT_simulated_read_19376913	chr19	-	1381	15	ISM	ENSMUSG00000061132.14	ENSMUST00000054769.7	2097	17	25986	126	25599	-126	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAATCTACTCCTTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	40956992	40917496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_40917737_40922870_40923027_40924716_40924801_40926094_40926172_40927810_40927843_40928615_40928701_40931745_40931789_40932570_40932599_40933930_40934001_40939397_40939470_40940794_40940877_40948142_40948307_40950788_40950946_40952686_40952728_40956942
ONT_simulated_read_19377485	chr3	-	1069	7	ISM	ENSMUSG00000039103.13	ENST00000334785.12	2164	11	859	5262	859	-5089	internal_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGATAGAAGAAGAGCG	NA	NA	NA	NA	NA	NA	NA	NA	151958583	151948376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_151948518_151949462_151949661_151952722_151952912_151953569_151953741_151953816_151954006_151955296_151955339_151958444
ONT_simulated_read_19378517	chr1	-	843	4	ISM	ENSMUSG00000003458.13	ENSMUST00000003550.11	2901	17	14522	397	14522	-397	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGATACCTTCTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	171895840	171893976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752
ONT_simulated_read_1938051	chr14	-	1260	1	Antisense	novelGene_ENSMUSG00000022106.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCAGATAGAGAGAACTGAC	NA	NA	NA	NA	NA	NA	NA	NA	73421495	73420235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr14_-_73420200_73421500
ONT_simulated_read_19382694	chr6	-	2224	13	ISM	ENSMUSG00000037709.14	ENST00000264344.10	4048	18	29398	1721	29398	412	internal_fragment	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTGACTAAACAAGTAGCTA	NA	NA	NA	NA	NA	NA	NA	NA	58951092	58911950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_58912697_58916280_58916383_58917105_58917303_58921105_58921190_58923024_58923121_58930434_58930519_58931186_58931408_58932200_58932283_58933021_58933161_58933638_58933844_58942045_58942194_58950139_58950183_58951015
ONT_simulated_read_1938473	chr2	-	1028	2	ISM	ENSMUSG00000050619.15	ENSMUST00000079024.12	2465	5	3549	3170	3405	1290	internal_fragment	FALSE	canonical	NA	NA	NA	NA	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAGATGAGGACACAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	120997200	120994331	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_120994684_120996524
ONT_simulated_read_19386062	chr4	-	826	9	ISM	ENSMUSG00000049488.15	ENST00000453906.6	2102	18	6033	13933	6033	-13883	internal_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAATGAATGGAATGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	12079969	12053527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_12053587_12053674_12053775_12054745_12054833_12055030_12055130_12057315_12057415_12058520_12058578_12061754_12061861_12063034_12063159_12079874
ONT_simulated_read_19386520	chr4	-	623	4	ISM	ENSMUSG00000028851.7	ENSMUST00000030665.7	1316	8	11471	136	11471	-136	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACCTTAGGGCTGGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	133261836	133259988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_133260111_133260505_133260625_133260716_133260801_133261538
ONT_simulated_read_19386539	chr14	-	2091	1	ISM	ENSMUSG00000022003.8	ENSMUST00000022580.8	3588	10	24347	483	24347	-483	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTACACTTCACTGTAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	76000130	75998039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_75998000_76000100
ONT_simulated_read_19388133	chr1	-	397	4	ISM	ENSMUSG00000041406.15	ENSMUST00000045876.8	3179	24	7800	29011	7800	-29011	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGACACAAAGAGATCATTT	NA	NA	NA	NA	NA	NA	NA	NA	163814565	163810333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_163810373_163811892_163811978_163813573_163813737_163814455
ONT_simulated_read_19389880	chr7	-	729	2	ISM	ENSMUSG00000040857.16	ENST00000440177.6	2067	4	4490	1007	4490	527	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCCTTCCTGCACTACCCA	NA	NA	NA	NA	NA	NA	NA	NA	24945175	24944344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_24944957_24945058
ONT_simulated_read_19390803	chr12	-	654	1	ISM	ENSMUSG00000021120.12	ENSMUST00000072154.9	2339	4	7200	1134	7194	-550	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTTAGCTAGGGATGGT	NA	NA	NA	NA	NA	NA	NA	NA	79129225	79128571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_79128600_79129200
ONT_simulated_read_19392778	chr4	+	1526	10	ISM	ENSMUSG00000006386.16	ENST00000519097.5	3759	21	312	37052	0	-37052	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAACACCAAGGCGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	94627754	94725579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_94627930_94686847_94686959_94687363_94687517_94692521_94692654_94693049_94693191_94708320_94708473_94715492_94715638_94715906_94716063_94718120_94718256_94725353
ONT_simulated_read_19393721	chr9	-	862	1	ISM	ENSMUSG00000031990.16	ENSMUST00000034472.16	1942	9	57025	123	57025	-123	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTTCTTAAGGAGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	27009664	27008802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_27008800_27009700
ONT_simulated_read_19396572	chr10	-	532	4	ISM	ENSMUSG00000020167.15	ENSMUST00000105341.8	2451	18	15723	611	15723	-177	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAGAAGGTGTCTGGCGT	NA	NA	NA	NA	NA	NA	NA	NA	80251123	80246064	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80246109_80246231_80246459_80249038_80249172_80250995
ONT_simulated_read_1939803	chr2	+	2793	6	ISM	ENSMUSG00000033943.16	ENST00000219905.12	11942	25	38232	16616	38224	-16616	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATAGAAGAGCTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	119765932	119781612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_119766148_119769119_119769268_119771702_119772327_119776652_119776944_119777305_119778775_119781566
ONT_simulated_read_19398180	chr1	+	750	3	ISM	ENSMUSG00000026109.15	ENSMUST00000114565.8	2718	10	17557	41669	0	-41669	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGCTACCAGAATGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	50966677	50977410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_50967279_50969707_50969818_50977371
ONT_simulated_read_19403651	chr11	-	1011	1	ISM	ENSMUSG00000052298.13	ENSMUST00000064104.13	3069	6	67951	1258	67951	-1258	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTGTTCCTCTTCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	54610550	54609539	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_54609500_54610600
ONT_simulated_read_19407055	chr4	-	2283	11	ISM	ENSMUSG00000014592.22	ENSMUST00000097774.9	8533	23	775677	2960	22377	-2671	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCTTGTCATTAGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	151170656	151146941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_151147313_151155882_151155914_151158444_151158520_151159548_151159743_151162320_151162393_151163237_151163485_151164143_151164332_151168133_151168658_151169019_151169336_151170016_151170096_151170470
ONT_simulated_read_194092	chr8	+	328	3	ISM	ENSMUSG00000043243.16	ENSMUST00000143662.8	2267	15	7096	2221	1081	1	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGAGCTCCCCACTGTG	NA	NA	NA	NA	NA	NA	NA	NA	72057387	72058359	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_72057499_72057571_72057680_72058250
ONT_simulated_read_19412368	chr16	-	1173	6	ISM	ENSMUSG00000022673.6	ENST00000648407.1	2232	14	5366	4	5366	-4	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCTGCATGGCCCTCGG	NA	NA	NA	NA	NA	NA	NA	NA	15449684	15442544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_15442634_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562
ONT_simulated_read_19415267	chr10	-	1515	2	ISM	ENSMUSG00000020100.16	ENSMUST00000117513.8	5240	6	31769	3057	31769	-1103	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTCTTTCCAGCTGACA	NA	NA	NA	NA	NA	NA	NA	NA	60556792	60550907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_60552270_60556639
ONT_simulated_read_19417675	chr10	+	438	2	ISM	ENSMUSG00000035011.16	ENSMUST00000117956.2	1863	3	0	4177	0	-4162	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGCGACATCCTGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	80973786	80980115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_80973905_80979795
ONT_simulated_read_19419597	chr4	-	1378	1	ISM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	36569	78	36548	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	5723	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTTTCTTGTGTCTCAA	NA	NA	NA	NA	NA	NA	NA	NA	137048462	137047084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_137047100_137048500
ONT_simulated_read_19422844	chr18	-	754	1	ISM	ENSMUSG00000042834.16	ENSMUST00000168890.2	2185	5	25207	1050	24613	370	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTACTTTGTTTCCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	33571875	33571121	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_33571100_33571900
ONT_simulated_read_19425872	chr7	-	1580	14	ISM	ENSMUSG00000002968.10	ENSMUST00000208551.2	2678	17	496	1026	494	-1016	internal_fragment	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACAGGGCAGCCCCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	44541294	44529840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206
ONT_simulated_read_19429008	chr4	-	350	1	ISM	ENSMUSG00000028840.11	ENSMUST00000030644.8	1994	3	1581	373	1581	-373	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCTGAATATCAGCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	133971322	133970972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_133971000_133971300
ONT_simulated_read_19429413	chr9	-	2103	13	ISM	ENSMUSG00000042790.17	ENST00000531452.5	2667	15	6086	407	6086	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGCCGTGTACATTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	45811553	45776131	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_45776297_45777863_45777960_45778244_45778350_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043
ONT_simulated_read_19429773	chr5	+	538	5	ISM	ENSMUSG00000029199.12	ENSMUST00000122026.6	1668	11	68	11521	25	-11128	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCGACAATACGGCCAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	65548907	65555029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945
ONT_simulated_read_19430153	chr10	-	1331	11	ISM	ENSMUSG00000020238.15	ENSMUST00000020463.14	3118	14	2867	1622	2801	-1414	internal_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCAAGTGATGAATGCTT	NA	NA	NA	NA	NA	NA	NA	NA	81329359	81323704	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_81323735_81324028_81324193_81324261_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182
ONT_simulated_read_19431133	chr13	-	416	1	ISM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	15775	2760	15775	-2760	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTAGGGTTCCAGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	55494821	55494405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_55494400_55494800
ONT_simulated_read_19431815	chr15	-	394	1	NIC	ENSMUSG00000091119.3	novel	1327	8	NA	NA	20446	0	mono-exon	FALSE	NA	NA	NA	NA	NA	167	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTTAAGCAGTACGCAGAT	NA	NA	NA	NA	NA	NA	NA	NA	3310232	3309838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_3309800_3310200
ONT_simulated_read_19436515	chr5	+	803	8	ISM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	38	15571	14	-13999	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACATCATTACCATTA	NA	NA	NA	NA	NA	NA	NA	NA	77122567	77132213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180
ONT_simulated_read_1943761	chr3	+	780	9	ISM	ENSMUSG00000028167.16	ENSMUST00000120397.8	1172	10	62	2843	22	-2843	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAAAAGACGGGAAGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	134987043	135007344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_134987130_134991275_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322
ONT_simulated_read_1943910	chr11	+	551	3	FSM	ENSMUSG00000020849.14	ENST00000575977.1	540	3	-11	0	-5	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGGTTCCTGCCCTGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	75623738	75655617	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_75623918_75642706_75642907_75655445
ONT_simulated_read_19439713	chr5	-	750	6	ISM	ENSMUSG00000011831.17	ENST00000540033.2	2870	19	53198	68110	53198	-68110	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATGAATCAGGCAGAATTA	NA	NA	NA	NA	NA	NA	NA	NA	107969710	107963717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_107963758_107964639_107964784_107966754_107966881_107967469_107967545_107968297_107968523_107969570
ONT_simulated_read_19442937	chrX	-	3673	21	ISM	ENSMUSG00000025665.17	ENSMUST00000096348.10	4151	23	16920	54	17	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAATGATTGGACATTAT	NA	NA	NA	NA	NA	NA	NA	NA	110355972	110297942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927
ONT_simulated_read_19443610	chr5	-	1511	1	ISM	ENSMUSG00000015882.19	ENSMUST00000045586.13	5708	7	158924	0	157860	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGATGTTTTTCAAAGT	NA	NA	NA	NA	NA	NA	NA	NA	45856033	45854522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_45854500_45856000
ONT_simulated_read_19453914	chr3	+	773	7	ISM	ENSMUSG00000033386.11	ENSMUST00000195905.5	6823	15	18483	4870	18483	-171	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGGTTTCCCAGCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	116690358	116696956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717
ONT_simulated_read_19459448	chr4	-	1465	1	ISM	ENSMUSG00000041459.16	ENSMUST00000165113.8	6495	7	11172	1978	9538	-1978	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCACCTCTGCAGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	148700281	148698816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_148698800_148700300
ONT_simulated_read_19465416	chr3	-	803	5	ISM	ENSMUSG00000027663.13	ENSMUST00000168566.3	7672	7	4403	6816	4403	-214	internal_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTGTAACGTTGGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	32415366	32395760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_32395845_32397482_32397584_32397700_32397868_32399606_32399730_32415038
ONT_simulated_read_19468048	chr4	-	1231	9	ISM	ENSMUSG00000028577.14	ENSMUST00000107107.9	2784	14	16837	578	16837	-578	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	133	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTGCTTTGTTAGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	94474644	94457981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_94458147_94459923_94460089_94462218_94462321_94463402_94463472_94466623_94466693_94470717_94470938_94471650_94471809_94472069_94472240_94474531
ONT_simulated_read_19468743	chr19	-	193	2	ISM	ENSMUSG00000025208.10	ENSMUST00000097715.4	1398	3	316	983	316	-983	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCGAGCATCCAGGGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	44994565	44994250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_44994380_44994501
ONT_simulated_read_19470953	chr9	-	1159	4	ISM	ENSMUSG00000036986.17	ENSMUST00000153820.8	2652	8	19165	100	16807	-100	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCAGCTCTGACCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	58137904	58128432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_58129149_58136637_58136691_58137110_58137370_58137773
ONT_simulated_read_19471585	chr10	-	623	1	ISM	ENSMUSG00000019763.12	ENSMUST00000042251.11	3139	13	28905	946	28905	-946	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAGCTTACAAGCCATACA	NA	NA	NA	NA	NA	NA	NA	NA	4353483	4352860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_4352900_4353500
ONT_simulated_read_19475616	chr4	-	1455	3	ISM	ENSMUSG00000003032.9	ENSMUST00000107619.3	3029	5	1510	826	1510	-826	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGGAGAAAGGAAGAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	55530956	55527968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_55528301_55529717_55529883_55529998
ONT_simulated_read_1947746	chr13	+	450	3	FSM	ENSMUSG00000042043.7	ENST00000520361.5	439	3	-8	-3	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGTTTGTTTTATACT	NA	NA	NA	NA	NA	NA	NA	NA	94925417	94979408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_94925511_94968867_94968974_94979157
ONT_simulated_read_19478250	chr17	+	1186	1	FSM	ENSMUSG00000117278.2	ENSMUST00000233737.2	3095	1	0	1909	0	-1909	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTATCTGTGGCATACTC	NA	NA	NA	NA	NA	NA	NA	NA	13551009	13552195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_13551000_13552200
ONT_simulated_read_19479231	chr9	+	1163	8	FSM	ENSMUSG00000034563.17	ENST00000310958.10	2537	8	224	1150	3	-1150	multi-exon	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTTCCTTAGGGAAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	72892889	72919480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_72892956_72904683_72904753_72906305_72906421_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211
ONT_simulated_read_19479897	chr6	-	735	4	ISM	ENSMUSG00000059430.15	ENSMUST00000121731.8	1273	9	7198	-7	7198	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	745	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGAGGCTCTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	83497774	83489886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_83490111_83493249_83493432_83496749_83496942_83497637
ONT_simulated_read_19486939	chr8	-	691	1	NIC	ENSMUSG00000048400.14	novel	1812	7	NA	NA	15374	0	mono-exon	FALSE	NA	NA	NA	NA	NA	629	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATGTGGGAAGGTCACTT	NA	NA	NA	NA	NA	NA	NA	NA	96286451	96285760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_96285800_96286500
ONT_simulated_read_1948720	chr19	-	449	5	ISM	ENSMUSG00000024665.9	ENSMUST00000025567.9	3150	12	35133	1503	35133	-89	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGAAGCTGCCGTCCTCCG	NA	NA	NA	NA	NA	NA	NA	NA	10043977	10041631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_10041679_10042049_10042176_10042965_10043046_10043615_10043713_10043878
ONT_simulated_read_19487227	chr2	-	800	3	ISM	ENSMUSG00000027400.12	ENSMUST00000028883.12	2386	4	1369	1429	34	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	483	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTCCCCTCCATGGAGTT	NA	NA	NA	NA	NA	NA	NA	NA	129540384	129529913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_129530536_129531656_129531806_129540355
ONT_simulated_read_1948928	chr6	+	568	3	ISM	ENSMUSG00000030271.15	ENSMUST00000032406.15	1549	7	6346	4	4954	-4	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACGCAGTGAAGAGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	113310278	113311145	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_113310454_113310591_113310642_113310802
ONT_simulated_read_19493274	chr17	+	1107	8	ISM	ENSMUSG00000024013.16	ENSMUST00000024810.8	2640	16	59	11265	59	-11006	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCCGCCGCAGCGACCC	NA	NA	NA	NA	NA	NA	NA	NA	29579946	29587262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_29580132_29582684_29582917_29583884_29583966_29584435_29584585_29585944_29586102_29586244_29586384_29586894_29586954_29587157
ONT_simulated_read_19493339	chr8	-	1864	1	NIC	ENSMUSG00000033596.6	novel	4443	13	NA	NA	27058	-357	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAAGCTAAGCTAAATAC	NA	NA	NA	NA	NA	NA	NA	NA	111999796	111997932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_111997900_111999800
ONT_simulated_read_19493744	chr7	-	321	1	ISM	ENSMUSG00000030733.11	ENSMUST00000205440.2	3089	11	7345	431	7077	-420	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTAATAATCAGTACTCAT	NA	NA	NA	NA	NA	NA	NA	NA	126066917	126066596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126066600_126066900
ONT_simulated_read_19497994	chr11	-	1151	10	ISM	ENSMUSG00000020541.13	ENSMUST00000107869.9	1826	14	16392	281	-8188	-281	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAATGAGTGCCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	90562013	90536797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909
ONT_simulated_read_19499535	chr11	-	1845	1	ISM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	48054	711	48013	-711	mono-exon	FALSE	NA	NA	NA	NA	NA	325	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATCCCTAAGCGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	20014859	20013014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_20013000_20014900
ONT_simulated_read_19500427	chr7	+	1039	7	ISM	ENSMUSG00000033685.14	ENSMUST00000126534.8	3988	8	27	3241	27	-3241	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACCACCGTCATCGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	100142570	100147986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_100142673_100143420_100143583_100145932_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942
ONT_simulated_read_19502945	chr7	-	303	1	ISM	ENSMUSG00000025492.7	ENSMUST00000026565.7	678	2	882	0	882	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2752	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTGCTTTTATTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	140589801	140589498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_140589500_140589800
ONT_simulated_read_19503468	chr18	-	983	1	ISM	ENSMUSG00000044252.19	ENSMUST00000121808.8	3030	14	106377	0	63611	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTCAGTTGATATTGT	NA	NA	NA	NA	NA	NA	NA	NA	12889353	12888370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_12888400_12889400
ONT_simulated_read_19503877	chr6	-	218	1	ISM	ENSMUSG00000091625.9	ENSMUST00000170382.5	494	5	3410	2	3401	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGATTTGATTTATTA	NA	NA	NA	NA	NA	NA	NA	NA	56678267	56678049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_56678000_56678300
ONT_simulated_read_19503915	chr11	-	1632	2	ISM	ENSMUSG00000048728.16	ENSMUST00000050595.13	2059	6	9337	0	9337	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAATTTGTTTCTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	50768933	50763546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_50765115_50768869
ONT_simulated_read_19509195	chr14	+	930	5	ISM	ENSMUSG00000021823.11	ENSMUST00000022369.9	5267	21	92605	1780	92605	-1780	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCTCTATAAACCCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	21072070	21081964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_21072196_21074173_21074360_21079243_21079448_21079849_21079955_21081654
ONT_simulated_read_1950935	chr13	+	247	3	ISM	ENSMUSG00000015536.15	ENSMUST00000164737.8	745	6	-17	3930	-1	-1634	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGCCGAGAAGCTCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	114954805	114961150	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_114954860_114957337_114957483_114961102
ONT_simulated_read_19514659	chr18	-	128	1	NIC	ENSMUSG00000041923.16	novel	3309	11	NA	NA	343521	-473	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATCGGCTGCATTTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	22828192	22828064	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_22828100_22828200
ONT_simulated_read_19514753	chr5	-	761	7	NIC	ENSMUSG00000029370.11	novel	773	7	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGGCAAAGTGAGTCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	90765631	90751910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_90752000_90752104_90752224_90754273_90754326_90756657_90756852_90757573_90757672_90763653_90763797_90765565
ONT_simulated_read_1951518	chr15	+	876	5	ISM	ENSMUSG00000052253.7	ENSMUST00000061875.8	2802	6	2429	1111	2429	-1111	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCTGCTACTTCATTT	NA	NA	NA	NA	NA	NA	NA	NA	25986880	25997456	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_25987133_25987246_25987410_25991538_25991652_25996191_25996336_25997252
ONT_simulated_read_19516690	chr11	-	851	6	ISM	ENSMUSG00000041592.17	ENSMUST00000041627.14	11287	45	259818	16942	96743	-16931	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGCTTGTACACCAGGTAC	NA	NA	NA	NA	NA	NA	NA	NA	113697226	113684141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_113684265_113684548_113684690_113685748_113685914_113690968_113691095_113693950_113694113_113697092
ONT_simulated_read_19517689	chr17	-	1650	11	ISM	ENSMUSG00000040356.17	ENSMUST00000046022.16	3951	28	4895	1286	4895	-1286	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCGGTTTCCTGCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	35064291	35059505	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_35059697_35059833_35059961_35060043_35060195_35060417_35060523_35060646_35060785_35060919_35061058_35061787_35062019_35063313_35063425_35063590_35063804_35063979_35064077_35064143
ONT_simulated_read_19517786	chr1	-	2105	1	ISM	ENSMUSG00000026425.16	ENSMUST00000097588.9	8026	23	237630	2362	235287	-1120	mono-exon	FALSE	NA	NA	NA	NA	NA	229	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTCTGACTGCATGGG	NA	NA	NA	NA	NA	NA	NA	NA	131217455	131215350	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_131215400_131217500
ONT_simulated_read_19518213	chr8	-	622	8	ISM	ENSMUSG00000070003.8	ENSMUST00000049908.11	1475	17	9151	81	9151	-80	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCAGGCCTCTGGACCTCT	NA	NA	NA	NA	NA	NA	NA	NA	71051813	71050220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71050419_71050662_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051679_71051767
ONT_simulated_read_19519082	chr12	-	822	1	ISM	ENSMUSG00000034290.10	ENST00000238616.10	6055	23	37326	2522	37326	-1568	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACCCTCCTCGGGGAGTA	NA	NA	NA	NA	NA	NA	NA	NA	85348677	85347855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_85347900_85348700
ONT_simulated_read_19519681	chr13	-	347	1	ISM	ENSMUSG00000068184.8	ENSMUST00000163558.3	678	4	105688	0	105656	0	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	NA	NA	NA	NA	NA	NA	NA	108189469	108189122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_108189100_108189500
ONT_simulated_read_19519814	chr13	-	1298	6	ISM	ENSMUSG00000025871.19	ENSMUST00000153065.8	2502	8	3431	976	-17	397	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	218	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCACAGATTGTTCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	54709685	54700011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505
ONT_simulated_read_19519956	chr11	+	1415	11	ISM	ENSMUSG00000034708.13	ENSMUST00000049460.12	2331	13	0	1083	0	-519	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCAGCATTGCTGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	102321147	102326550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534
ONT_simulated_read_19520031	chr2	-	1155	10	ISM	ENSMUSG00000026915.17	ENSMUST00000028279.10	16348	17	11741	29316	11741	-15712	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTCTCAAATATGAACTCAT	NA	NA	NA	NA	NA	NA	NA	NA	37525556	37489195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_37489268_37490756_37490916_37492946_37493147_37493933_37494027_37514184_37514297_37514504_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435
ONT_simulated_read_19520600	chr1	-	542	5	ISM	ENSMUSG00000025978.15	ENSMUST00000027121.15	3677	9	22400	1887	22400	-1887	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGGTCAGCAGCAGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	55243541	55211204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_55211242_55224108_55224188_55233402_55233507_55234674_55234797_55243341
ONT_simulated_read_19521843	chr19	-	405	3	ISM	ENSMUSG00000024787.15	ENSMUST00000025702.14	1635	8	6373	1233	6216	-780	internal_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGATGGAGAGCCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	6171961	6170661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6170774_6171408_6171553_6171812
ONT_simulated_read_1952977	chr8	+	1010	9	ISM	ENSMUSG00000071176.11	ENSMUST00000110800.9	5336	28	33563	36975	33563	-36975	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGCCAGAGGTACCTGC	NA	NA	NA	NA	NA	NA	NA	NA	14995300	15014110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_14995395_14997156_14997264_15004434_15004513_15004748_15004929_15006862_15006980_15008563_15008657_15011114_15011286_15012517_15012664_15014086
ONT_simulated_read_19530181	chr9	+	1303	12	FSM	ENSMUSG00000001833.18	ENST00000435235.6	1550	12	82	165	-41	-165	multi-exon	FALSE	canonical	NA	NA	NA	NA	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGCCAGCTTGGACATCA	NA	NA	NA	NA	NA	NA	NA	NA	25163871	25218882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_25163996_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
ONT_simulated_read_19535012	chr7	-	520	1	NIC	ENSMUSG00000030525.9	novel	2078	10	NA	NA	112505	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATCATGTAGGAGATGC	NA	NA	NA	NA	NA	NA	NA	NA	62749491	62748971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_62749000_62749500
ONT_simulated_read_19535109	chr16	+	1816	12	ISM	ENSMUSG00000022779.17	ENSMUST00000023465.16	3073	18	12661	251	12661	-246	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCTTAAGCATGCAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	16701305	16710603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ONT_simulated_read_19536585	chr2	+	459	5	ISM	ENSMUSG00000042670.6	ENSMUST00000037499.6	955	7	0	28530	0	-28390	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCAAATATCTGTAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	105734982	105767373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_105735076_105738668_105738775_105761063_105761198_105763609_105763699_105767336
ONT_simulated_read_19538242	chr11	-	668	2	ISM	ENSMUSG00000018733.11	ENSMUST00000175741.8	2337	4	882	1224	882	-1223	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGACTGCCCTGCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	83188839	83187124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_83187267_83188313
ONT_simulated_read_1954084	chrX	+	1583	11	FSM	ENSMUSG00000031112.11	ENST00000394335.6	3010	11	-3	1430	0	73	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTGTATACTCATAAACAT	NA	NA	NA	NA	NA	NA	NA	NA	49930317	49980543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_49930424_49930555_49930713_49968365_49968423_49974465_49974575_49974663_49974822_49975527_49975714_49976737_49976887_49977892_49977987_49978565_49978629_49978709_49978847_49980176
ONT_simulated_read_19541324	chr16	+	1675	7	ISM	ENSMUSG00000012017.5	ENSMUST00000012161.5	3308	11	6120	686	6087	-683	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCACCATTTCCCCGCGC	NA	NA	NA	NA	NA	NA	NA	NA	17621265	17625471	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_17621465_17621600_17621730_17622169_17622274_17622349_17622468_17622672_17622789_17624212_17624366_17624615
ONT_simulated_read_1954148	chr12	+	1604	6	ISM	ENSMUSG00000021185.17	ENSMUST00000167322.2	2941	14	64194	0	64194	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAATCTTTAGTATGAAC	NA	NA	NA	NA	NA	NA	NA	NA	100816594	100838607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_100816633_100819472_100819573_100823179_100823329_100825791_100825912_100833362_100833515_100837562
ONT_simulated_read_19542237	chr6	+	710	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	0	-245	0	245	mono-exon	FALSE	NA	NA	NA	NA	NA	1530	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCCATCGCCCTAGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	37783020	37783730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_37783000_37783700
ONT_simulated_read_19543263	chr16	+	526	1	ISM	ENSMUSG00000022812.15	ENSMUST00000023507.13	8303	11	0	156558	0	-151143	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAGCCCCCGACCCGGCC	NA	NA	NA	NA	NA	NA	NA	NA	37909362	37909888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_37909400_37909900
ONT_simulated_read_1954364	chr11	-	2790	20	ISM	ENSMUSG00000008855.18	ENSMUST00000008999.12	4269	29	22961	1348	22961	-1341	internal_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCACTGGGTGGCTATTCT	NA	NA	NA	NA	NA	NA	NA	NA	102097989	102087917	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732
ONT_simulated_read_19546440	chr2	-	2256	8	ISM	ENSMUSG00000027167.12	ENSMUST00000122965.8	3048	10	38483	461	38483	-461	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACGCACTGTATACAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	105696426	105531832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_105533207_105622560_105622668_105624861_105624971_105639610_105639800_105644610_105644696_105662475_105662616_105672576_105672706_105696303
ONT_simulated_read_19546826	chr6	-	2193	1	ISM	ENSMUSG00000052962.4	ENSMUST00000065103.4	3721	4	7527	1094	7527	-1094	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTTTGTAGACCAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	71793267	71791074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_71791100_71793300
ONT_simulated_read_19547919	chr5	-	1227	4	ISM	ENSMUSG00000004642.14	ENSMUST00000101354.10	1578	7	6686	0	6680	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	337	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	33802964	33797398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843
ONT_simulated_read_19549390	chr2	-	499	3	ISM	ENSMUSG00000002731.7	ENST00000677689.1	1352	7	10999	428	10999	-427	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGTGTCCTTTCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	76467218	76460668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_76460913_76463876_76464052_76467138
ONT_simulated_read_1954990	chr10	+	1814	12	ISM	ENSMUSG00000069601.15	ENSMUST00000182692.8	3833	21	52976	91	52338	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAGAGATCAGCAGGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	69814300	69859696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69837752_69838062_69838340_69838432_69840439_69840822_69851397_69851484_69859661
ONT_simulated_read_19552105	chr10	+	697	6	ISM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	51	12261	51	-9148	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAAGGGGAGCTATACTG	NA	NA	NA	NA	NA	NA	NA	NA	58159338	58248252	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_58159510_58234842_58235003_58243891_58243959_58245381_58245503_58245874_58246025_58248224
ONT_simulated_read_19552270	chr17	-	792	1	ISM	ENSMUSG00000024248.15	ENSMUST00000025095.9	1076	3	11621	0	11621	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2706	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTTGTTTTTTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	83810138	83809346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_83809300_83810100
ONT_simulated_read_19552746	chr1	+	460	3	ISM	ENSMUSG00000039323.19	ENSMUST00000120564.2	991	4	0	2824	0	-2824	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTCTACTCCCTGCACA	NA	NA	NA	NA	NA	NA	NA	NA	72864480	72888802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_72864634_72888244_72888472_72888722
ONT_simulated_read_19553626	chr14	-	181	2	ISM	ENSMUSG00000021848.17	ENST00000554559.5	724	4	290	3524	195	-3524	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCCTTACGCAGTCAATGG	NA	NA	NA	NA	NA	NA	NA	NA	48904697	48899976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_48900117_48904656
ONT_simulated_read_19554266	chr4	+	691	7	ISM	ENSMUSG00000057375.14	ENSMUST00000075693.12	1321	10	49	15201	49	-15201	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGAGATCGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	107171608	107201818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708
ONT_simulated_read_1955638	chr12	-	3572	24	ISM	ENSMUSG00000034761.16	ENST00000682126.1	4142	31	43242	0	43242	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTATAAAGTATTTGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	69896388	69850532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_69852126_69853971_69854028_69855985_69856057_69858047_69858141_69859909_69859979_69862528_69862707_69863063_69863168_69864795_69864855_69865157_69865273_69869576_69869638_69870195_69870276_69871353_69871439_69872515_69872558_69873064_69873163_69874135_69874293_69874797_69874841_69877202_69877271_69878325_69878385_69884768_69884848_69888693_69888811_69889661_69889744_69891129_69891193_69892454_69892587_69896320
ONT_simulated_read_1955677	chr5	-	1222	1	FSM	ENSMUSG00000104559.2	ENSMUST00000199149.2	775	1	0	-447	0	447	mono-exon	FALSE	NA	NA	NA	NA	NA	526	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTGTACACACTGGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	111536155	111534933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_111534900_111536200
ONT_simulated_read_19557685	chr17	+	318	5	ISM	ENSMUSG00000041119.13	ENST00000398234.7	1777	18	27	32251	0	-32248	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGAGTTGTTATTGT	NA	NA	NA	NA	NA	NA	NA	NA	31605260	31662882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_31605331_31634253_31634332_31639218_31639263_31662139_31662195_31662811
ONT_simulated_read_19559036	chr10	+	458	2	ISM	ENSMUSG00000020044.14	ENSMUST00000020234.14	4722	5	184	11095	184	-11095	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGGCCCTTTGGCACTCTG	NA	NA	NA	NA	NA	NA	NA	NA	86136419	86174275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_86136839_86174236
ONT_simulated_read_1955989	chr9	-	1270	2	ISM	ENSMUSG00000046997.6	ENSMUST00000055433.5	2720	3	22450	772	22450	-772	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTCCTCCATTTTAAGA	NA	NA	NA	NA	NA	NA	NA	NA	96878446	96826306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_96826758_96877627
ONT_simulated_read_19560262	chr9	-	223	3	ISM	ENSMUSG00000032026.8	ENSMUST00000217037.2	609	5	5420	91	5409	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAACTCGATCTGAGAAACA	NA	NA	NA	NA	NA	NA	NA	NA	48386470	48385551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_48385671_48385760_48385814_48386419
ONT_simulated_read_19561037	chr5	+	1421	9	ISM	ENSMUSG00000050017.12	ENSMUST00000086635.9	2761	12	15725	1087	15681	-1087	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGCTCTTTATTGGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	111494353	111535138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_111494441_111494985_111494994_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
ONT_simulated_read_19564820	chr17	+	1140	10	ISM	ENSMUSG00000024319.19	ENSMUST00000025178.17	3383	20	103	6560	103	-6560	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGGTGTTGAAGACACAG	NA	NA	NA	NA	NA	NA	NA	NA	34174888	34179449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34177751_34178198_34178350_34178968_34179070_34179160_34179294_34179420
ONT_simulated_read_19568454	chr7	-	767	3	ISM	ENSMUSG00000030888.15	ENSMUST00000033179.14	3053	7	169	2639	169	-1965	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCGCAAGCAGTGGCGGA	NA	NA	NA	NA	NA	NA	NA	NA	105385819	105383575	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105383661_105383896_105384264_105385504
ONT_simulated_read_19569553	chr8	-	494	4	ISM	ENSMUSG00000037363.10	ENST00000297720.9	991	6	8984	61	8984	-61	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTTTTGCTCCTGTCG	NA	NA	NA	NA	NA	NA	NA	NA	26077450	26071768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26071803_26075364_26075485_26076622_26076824_26077311
ONT_simulated_read_19570869	chr8	+	752	3	FSM	ENSMUSG00000031950.8	ENST00000563744.1	777	3	25	0	25	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGGTGTGACCATGTCCG	NA	NA	NA	NA	NA	NA	NA	NA	112667389	112679547	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_112667485_112667791_112667848_112678946
ONT_simulated_read_19574712	chr9	-	959	9	ISM	ENSMUSG00000062270.15	ENSMUST00000085248.12	1882	13	12350	490	12350	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	173	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTCTTCCTTTTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	89984418	89974207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352
ONT_simulated_read_19574834	chr1	+	553	3	ISM	ENSMUSG00000013973.13	ENSMUST00000064950.11	1618	5	0	2815	0	-2749	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATGTGACCCCCAGAGCC	NA	NA	NA	NA	NA	NA	NA	NA	171156975	171166435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_171157095_171165819_171166209_171166390
ONT_simulated_read_19577167	chr14	-	1184	8	ISM	ENSMUSG00000033487.15	ENST00000398316.7	5732	24	41311	15564	41311	-15564	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAAGTACAAAGGCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	72799144	72790954	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037
ONT_simulated_read_19580441	chr8	-	360	1	ISM	ENSMUSG00000039375.17	ENSMUST00000144711.9	4720	31	88775	490	66495	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATCTGCAAAGCAGATAG	NA	NA	NA	NA	NA	NA	NA	NA	55082939	55082579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_55082600_55082900
ONT_simulated_read_19582297	chr5	+	1518	5	ISM	ENSMUSG00000025854.16	ENSMUST00000026972.8	3582	10	573	15056	573	-15056	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGCTGGTAGGATGATCAA	NA	NA	NA	NA	NA	NA	NA	NA	138740841	138780776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_138741981_138743555_138743735_138752383_138752463_138778941_138779035_138780748
ONT_simulated_read_19586050	chr16	-	792	7	ISM	ENSMUSG00000022515.7	ENSMUST00000023157.6	2398	17	18011	252	18011	-252	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTATGGACAGGAAGACAGG	NA	NA	NA	NA	NA	NA	NA	NA	4764026	4759551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918
ONT_simulated_read_19591953	chr5	-	169	1	ISM	ENSMUSG00000029145.13	ENSMUST00000077693.10	2025	13	109	5595	109	-5585	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCCAGTGCACGCCGGAA	NA	NA	NA	NA	NA	NA	NA	NA	31350665	31350496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_31350500_31350700
ONT_simulated_read_19594661	chr9	-	909	1	ISM	ENSMUSG00000045414.8	ENSMUST00000113028.2	3950	3	17435	1874	16551	-148	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTATTTCACCATGTAA	NA	NA	NA	NA	NA	NA	NA	NA	94402699	94401790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_94401800_94402700
ONT_simulated_read_19594752	chr1	+	562	1	ISM	ENSMUSG00000026319.14	ENST00000256858.10	5451	29	73	90616	14	-89213	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAATCCTGGCAACTTC	NA	NA	NA	NA	NA	NA	NA	NA	105591661	105592223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_105591700_105592200
ONT_simulated_read_19599005	chr9	+	1164	12	ISM	ENSMUSG00000057193.9	ENSMUST00000034697.8	3456	22	7054	1321	6439	-275	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTCAGCCGAGAGGCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	21256177	21265000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
ONT_simulated_read_19603354	chr2	+	1161	9	ISM	ENSMUSG00000027330.17	ENSMUST00000079857.9	3004	15	0	5158	0	-5156	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGGATGTGCCTGTCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	131028877	131035259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_131029301_131030025_131030148_131030998_131031051_131033064_131033107_131033269_131033307_131033515_131033687_131034476_131034609_131034987_131035069_131035158
ONT_simulated_read_1960441	chr3	+	634	1	FSM	ENSMUSG00000036894.4	ENSMUST00000049064.4	6793	1	0	6159	0	-6159	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTACTAAGAAACACACCTT	NA	NA	NA	NA	NA	NA	NA	NA	61269058	61269692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_61269100_61269700
ONT_simulated_read_19604628	chr7	-	1636	11	ISM	ENSMUSG00000035401.10	ENST00000524767.5	4087	21	6998	24954	6998	-24954	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGACTTCCAAGCCCAAT	NA	NA	NA	NA	NA	NA	NA	NA	98297061	98264792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98288937_98289091_98290699_98290876_98294373_98294416_98295655_98295731_98297011
ONT_simulated_read_19605150	chr4	-	1251	1	NIC	ENSMUSG00000008305.19	novel	4369	20	NA	NA	81760	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTTTTCTGATGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	72036629	72035378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_72035400_72036600
ONT_simulated_read_1960733	chr2	+	1037	7	ISM	ENSMUSG00000038533.16	ENSMUST00000109725.8	6080	11	74055	7944	50472	-4639	internal_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGAGCTACACTGGGCTA	NA	NA	NA	NA	NA	NA	NA	NA	154352455	154373332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_154352518_154357736_154357919_154359628_154359883_154363070_154363157_154365823_154366020_154370756_154370826_154373144
ONT_simulated_read_19610242	chr11	+	776	5	ISM	ENSMUSG00000020521.8	ENSMUST00000020827.7	4452	9	28	8630	28	-8630	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGGAAGTTCTTTGGATT	NA	NA	NA	NA	NA	NA	NA	NA	86375510	86381221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_86375626_86376886_86377332_86377481_86377559_86379892_86379994_86381183
ONT_simulated_read_19611054	chr5	+	2269	16	ISM	ENSMUSG00000042744.17	ENST00000550722.5	15239	76	99506	29051	99506	-29032	internal_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGTCACACTGGACAAT	NA	NA	NA	NA	NA	NA	NA	NA	121458085	121477608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_121458164_121459460_121459644_121460254_121460420_121460698_121460869_121461980_121462097_121463253_121463358_121466147_121466310_121466425_121466575_121467127_121467208_121467520_121467685_121469738_121469977_121470984_121471122_121471485_121471613_121472399_121472538_121474652_121474790_121477487
ONT_simulated_read_19611434	chrX	-	1366	1	NIC	ENSMUSG00000040363.16	novel	6941	15	NA	NA	2416	-20200	mono-exon	FALSE	NA	NA	NA	NA	NA	255	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCCAGGGCCAAGTCCTAA	NA	NA	NA	NA	NA	NA	NA	NA	11925430	11924064	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_11924100_11925400
ONT_simulated_read_19612537	chr19	-	1887	12	ISM	ENSMUSG00000048612.17	ENST00000358334.9	6581	52	122512	23	122512	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTGTGGTATTTTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	37909259	37887757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_37888216_37889684_37889833_37890271_37890382_37892124_37892316_37893725_37893826_37896034_37896177_37899341_37899438_37899537_37899627_37901784_37901925_37904053_37904203_37904840_37905012_37909166
ONT_simulated_read_19619045	chr8	+	1839	6	FSM	ENSMUSG00000031728.11	ENST00000446827.6	1797	6	-37	-5	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCTCCCTTGTCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	110432719	110451564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_110433052_110436042_110436160_110447826_110447976_110448385_110448491_110449518_110449686_110450595
ONT_simulated_read_19619271	chr8	-	1901	7	ISM	ENSMUSG00000031575.19	ENST00000453999.1	1291	11	6474	-991	6474	-420	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAGGATGCAGAATTATAT	NA	NA	NA	NA	NA	NA	NA	NA	26317395	26306443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201
ONT_simulated_read_19620145	chr4	-	1213	2	ISM	ENSMUSG00000003282.10	ENST00000429357.2	1894	4	32619	373	32608	-373	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGTCATCTAAGCTAGGGT	NA	NA	NA	NA	NA	NA	NA	NA	3905774	3904062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_3904948_3905446
ONT_simulated_read_19620991	chr11	+	469	5	ISM	ENSMUSG00000001039.13	ENSMUST00000102657.10	817	7	0	3399	0	-3399	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGGTGTTCTGCTTGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	61395969	61400358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_61396098_61397169_61397239_61398453_61398566_61399897_61399995_61400295
ONT_simulated_read_19628340	chr18	-	948	9	ISM	ENSMUSG00000024493.10	ENST00000674398.1	3424	30	6491	32113	6491	-32113	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTATTTAAGAGGATTTTA	NA	NA	NA	NA	NA	NA	NA	NA	42377957	42367672	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813
ONT_simulated_read_19628354	chr4	-	505	4	ISM	ENSMUSG00002076083.1	ENSMUST00000105569.5	2723	12	3728	724	1677	-72	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	1667	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGTCCTCTACCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	156315586	156314515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_156314720_156314961_156315144_156315357_156315432_156315541
ONT_simulated_read_19632633	chr10	-	1481	1	ISM	ENSMUSG00000019947.11	ENSMUST00000219238.2	7581	10	180102	4638	37988	-704	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGCAAGGTCAGGAAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	67934468	67932987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_67933000_67934500
ONT_simulated_read_19633273	chr3	-	1336	3	ISM	ENSMUSG00000068798.11	ENSMUST00000090678.11	2407	8	63438	622	63387	-622	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	227	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCCATTGTTAATTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	105645214	105635204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_105636281_105639271_105639388_105645070
ONT_simulated_read_19633817	chr5	-	402	1	ISM	ENSMUSG00000007415.16	ENSMUST00000007559.15	2545	5	6374	1198	6246	131	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTTGTGTGACAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	3691560	3691158	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_3691200_3691600
ONT_simulated_read_1963587	chr7	-	724	7	ISM	ENSMUSG00000059119.10	ENSMUST00000072727.7	2285	16	21794	734	21530	-725	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGCACCCGGCCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	143081035	143068049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902
ONT_simulated_read_19636669	chr1	-	168	1	ISM	ENSMUSG00000062580.10	ENSMUST00000081104.10	7280	6	11795	6603	11795	-6603	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAAGCGGGCCATAAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	135229721	135229553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_135229600_135229700
ONT_simulated_read_19638084	chr10	+	946	6	ISM	ENSMUSG00000020085.16	ENSMUST00000067857.11	1442	10	12837	0	7499	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCGATCCTCCTCCTTCG	NA	NA	NA	NA	NA	NA	NA	NA	61563926	61575039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574806
ONT_simulated_read_19639080	chr11	-	316	3	ISM	ENSMUSG00000020718.13	ENST00000539111.7	1287	8	3743	5167	3743	-5167	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGCCCCTATTAAGGTCG	NA	NA	NA	NA	NA	NA	NA	NA	106666407	106664271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106664292_106664420_106664562_106666252
ONT_simulated_read_19639216	chr2	-	1873	1	ISM	ENSMUSG00000057147.14	ENSMUST00000028640.14	2632	8	136661	4	136595	0	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTTTTGTGTGAATGTC	NA	NA	NA	NA	NA	NA	NA	NA	114348773	114346900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_114346900_114348800
ONT_simulated_read_19639317	chr9	-	2515	18	ISM	ENSMUSG00000056167.9	ENSMUST00000070117.8	2853	20	8090	88	8090	-88	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTAGCTCTCTCTTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	114461052	114415033	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114426862_114426899_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889
ONT_simulated_read_1964400	chr17	+	448	1	ISM	ENSMUSG00000046201.10	ENSMUST00000076734.8	4866	20	83131	302	83131	-302	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTGGCCCATTTCCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	3248384	3248832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_3248400_3248800
ONT_simulated_read_19645695	chr3	+	395	4	ISM	ENSMUSG00000027804.14	ENSMUST00000029382.13	1752	10	123	5889	123	-5889	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGACTCCTCATCTGGACG	NA	NA	NA	NA	NA	NA	NA	NA	79498794	79505068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991
ONT_simulated_read_19648773	chr10	-	690	6	ISM	ENSMUSG00000019899.18	ENST00000421865.3	9459	62	279499	174172	279499	32091	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCGGGTCACGGGACTCT	NA	NA	NA	NA	NA	NA	NA	NA	27063873	27031452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_27031546_27034773_27034861_27040897_27041023_27052658_27052794_27060379_27060498_27063741
ONT_simulated_read_19652161	chr5	-	993	12	ISM	ENSMUSG00000025533.16	ENSMUST00000161094.8	1824	17	314	1738	21	-1476	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAACCTGGGAGTGTCGT	NA	NA	NA	NA	NA	NA	NA	NA	130052908	130041836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882
ONT_simulated_read_19652344	chr15	+	643	2	ISM	ENSMUSG00000033819.17	ENSMUST00000037551.15	2692	11	32	4221	0	-4221	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGCAGCTGGGCCTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	76555846	76574898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76555963_76574371
ONT_simulated_read_19655897	chr7	-	1363	1	ISM	ENSMUSG00000048787.14	ENSMUST00000059851.14	5985	3	37691	3896	37489	633	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCATGTCATAAGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	119457277	119455914	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_119455900_119457300
ONT_simulated_read_19656147	chr12	-	1205	5	ISM	ENSMUSG00000033713.13	ENSMUST00000177451.8	2882	6	4194	1317	24	-140	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCGCCCGAGAGCGATGA	NA	NA	NA	NA	NA	NA	NA	NA	99355137	99162669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_99163073_99175719_99175826_99257495_99257561_99307680_99307794_99354619
ONT_simulated_read_19656294	chr7	-	451	1	FSM	ENSMUSG00000076275.3	ENSMUST00000102320.3	84	1	-435	68	-435	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	246	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCGGAAAGGGCCCACAGT	NA	NA	NA	NA	NA	NA	NA	NA	142131319	142130868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_142130900_142131300
ONT_simulated_read_19659688	chr8	-	1761	6	ISM	ENSMUSG00000038225.16	ENSMUST00000040468.16	3772	15	30516	807	23962	-807	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATGCCTGGATCCCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	47039719	47029460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_47029757_47031053_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641
ONT_simulated_read_19660415	chr11	-	756	4	NIC	ENSMUSG00000020696.19	novel	4973	7	NA	NA	16253	-501	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	175	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCACATGGTGACCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	82703604	82696933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_82697016_82700833_82701045_82701853_82701938_82703225
ONT_simulated_read_19665413	chr10	-	355	1	ISM	ENSMUSG00000019814.6	ENSMUST00000019950.6	2297	11	14181	493	14181	-493	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGATAAACTAAAGGAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	13054731	13054376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_13054400_13054700
ONT_simulated_read_19666613	chr5	+	1515	10	ISM	ENSMUSG00000004846.11	ENSMUST00000004968.11	3280	19	3483	0	3483	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTGTGAGTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	137019355	137025502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022996_137023144_137023786_137023913_137024959
ONT_simulated_read_19669363	chr5	-	121	2	ISM	ENSMUSG00000059518.15	ENSMUST00000111090.9	698	4	35	2653	35	-2628	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGACCCCCATGCCGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	137016362	137013802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137013904_137016342
ONT_simulated_read_19671579	chr11	-	990	3	FSM	ENSMUSG00000018168.9	ENST00000377945.7	1053	3	0	63	0	-56	multi-exon	FALSE	canonical	NA	NA	NA	NA	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGAGTTCTCCTCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	98407763	98357867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_98358513_98381157_98381416_98407676
ONT_simulated_read_19674358	chr15	+	956	8	ISM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	39	662	39	-408	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGCAGGCTTTCCATGTC	NA	NA	NA	NA	NA	NA	NA	NA	102426932	102431449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
ONT_simulated_read_19675921	chr17	+	2376	17	ISM	ENSMUSG00000001870.17	ENSMUST00000112516.8	5140	30	101	78313	0	-78303	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATACCGATGGCTCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	75485905	75620018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_75486200_75532150_75532376_75533961_75534237_75555888_75555992_75559338_75559411_75573482_75573606_75580861_75581030_75583390_75583619_75585946_75585970_75589322_75589423_75589914_75590014_75597009_75597136_75598285_75598412_75599750_75599874_75603218_75603339_75617150_75617274_75619970
ONT_simulated_read_19678500	chr11	-	589	5	ISM	ENSMUSG00000018736.15	ENSMUST00000018880.14	2382	9	13135	1191	13041	-298	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCTCCTCACGCCCATCG	NA	NA	NA	NA	NA	NA	NA	NA	68730826	68713450	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_68713492_68720740_68720893_68724179_68724272_68726975_68727150_68730696
ONT_simulated_read_19679922	chr19	-	1175	1	ISM	ENSMUSG00000025024.8	ENSMUST00000025997.7	1948	6	10008	0	9471	0	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCAGTGTGTTAACAAAG	NA	NA	NA	NA	NA	NA	NA	NA	53369001	53367826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_53367800_53369000
ONT_simulated_read_19681119	chr11	+	2076	15	ISM	ENSMUSG00000020319.10	ENSMUST00000020568.10	2792	18	0	41449	0	-41449	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTTCCATTGGTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	21522234	21807540	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_21522371_21602225_21602311_21609994_21610043_21610888_21610940_21613996_21614068_21614325_21614386_21639567_21639683_21641769_21641904_21645113_21645306_21661461_21662072_21671102_21671292_21674512_21674637_21698877_21698942_21763359_21763463_21807446
ONT_simulated_read_19687131	chr2	+	2941	12	FSM	ENSMUSG00000074698.11	ENST00000349736.10	3961	12	42	978	-23	-492	multi-exon	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAATTGTTTGGGGAGTT	NA	NA	NA	NA	NA	NA	NA	NA	152068832	152122791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_152068912_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
ONT_simulated_read_19689832	chr11	-	1258	1	ISM	ENSMUSG00000037275.15	ENSMUST00000172035.8	6213	28	46756	524	46662	-524	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCTTCCTGTGATGGAG	NA	NA	NA	NA	NA	NA	NA	NA	58012609	58011351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_58011400_58012600
ONT_simulated_read_19692431	chr15	-	1763	2	ISM	ENSMUSG00000054855.14	ENSMUST00000003451.11	2203	5	4826	0	4823	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGGAGCAGCGCTCTCAA	NA	NA	NA	NA	NA	NA	NA	NA	98570516	98567085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_98568724_98570391
ONT_simulated_read_19692780	chr14	+	1259	9	ISM	ENSMUSG00000021916.17	ENSMUST00000022476.9	2018	10	226	784	226	-783	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTATGTGGAATGTCCGCC	NA	NA	NA	NA	NA	NA	NA	NA	30723632	30733164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_30723955_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077
ONT_simulated_read_196928	chr9	+	619	7	ISM	ENSMUSG00000032301.14	ENSMUST00000034848.14	1165	9	25	1644	25	-1427	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTATTTTCGTGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	54858098	54863670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540
ONT_simulated_read_19694569	chr1	-	305	1	FSM	ENSMUSG00000083582.2	ENSMUST00000120499.2	219	1	0	-86	0	86	mono-exon	FALSE	NA	NA	NA	NA	NA	358	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACTTATAGACCCCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	121435532	121435227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_121435200_121435500
ONT_simulated_read_19694917	chr6	+	2121	1	ISM	ENSMUSG00000033933.14	ENSMUST00000035673.8	2792	3	5548	6	5548	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAAGCTACTGTGTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	113606467	113608588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_113606500_113608600
ONT_simulated_read_19695500	chr13	+	710	6	ISM	ENSMUSG00000042426.7	ENSMUST00000038574.7	4682	27	5068	24905	2897	-10993	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTACACTGCTCGAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	113069055	113081061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_113069171_113069617_113069764_113072002_113072132_113076906_113077034_113078206_113078366_113081027
ONT_simulated_read_19696810	chr4	+	1390	8	ISM	ENSMUSG00000035069.4	ENSMUST00000035780.4	1915	9	0	12846	0	-12846	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATCCTTCTCATGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	103171008	103210794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_103171081_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698
ONT_simulated_read_19702597	chr8	-	560	3	ISM	ENSMUSG00000003575.14	ENSMUST00000076615.6	5683	14	41625	9592	11054	-5989	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTCAGTTACTGTACCA	NA	NA	NA	NA	NA	NA	NA	NA	70850604	70844596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70844814_70845571_70845706_70850395
ONT_simulated_read_19703634	chr16	-	1653	1	ISM	ENSMUSG00000022536.15	ENSMUST00000115844.3	3292	16	34296	0	34296	0	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAACTGTATCATTGTA	NA	NA	NA	NA	NA	NA	NA	NA	4833425	4831772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4831800_4833400
ONT_simulated_read_1970406	chr5	-	278	3	ISM	ENSMUSG00000046798.15	ENSMUST00000115445.8	3477	4	1489	3086	1489	-3086	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATTCAACAGAAACGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	5563241	5558308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_5558455_5561070_5561123_5563161
ONT_simulated_read_19704322	chr1	+	822	2	ISM	ENSMUSG00000041757.18	ENST00000637508.1	5477	25	12175	27440	12175	-27012	internal_fragment	FALSE	canonical	NA	NA	NA	NA	231	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCACTCTGTGCCCCGC	NA	NA	NA	NA	NA	NA	NA	NA	133199954	133201942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_133200430_133201595
ONT_simulated_read_19705514	chr7	+	202	1	ISM	ENSMUSG00000045752.14	ENSMUST00000060433.10	1519	3	0	1643	0	-1577	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTGGCGGGACGCTGCG	NA	NA	NA	NA	NA	NA	NA	NA	142622985	142623187	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_142623000_142623200
ONT_simulated_read_19707376	chr19	-	219	2	ISM	ENSMUSG00000024826.16	ENSMUST00000118623.2	2406	12	-79	9687	0	-9687	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTGGACTCACAGACTGG	NA	NA	NA	NA	NA	NA	NA	NA	5962899	5957101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5957190_5962768
ONT_simulated_read_19708619	chr7	+	479	6	ISM	ENSMUSG00000042831.14	ENSMUST00000060834.12	982	7	71	1643	71	-1529	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTATGAACCTCGACAGC	NA	NA	NA	NA	NA	NA	NA	NA	30008212	30012086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30012015
ONT_simulated_read_19710914	chr17	+	465	4	ISM	ENSMUSG00000024392.18	ENSMUST00000173550.8	3536	24	10144	1	9775	-1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTCGAGTACCTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	35364863	35366295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35364898_35365001_35365146_35365221_35365330_35366116
ONT_simulated_read_19711963	chr2	+	831	3	NIC	ENSMUSG00000060802.9	novel	860	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATTG	NA	NA	NA	NA	NA	NA	NA	NA	121978166	121983564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_+_121978286_121981353_121981633_121983131
ONT_simulated_read_19712855	chr11	-	833	1	ISM	ENSMUSG00000005267.14	ENSMUST00000185656.7	3370	6	13331	3238	13331	-1216	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCCACACTGGGAAAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	62606161	62605328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_62605300_62606200
ONT_simulated_read_19712948	chr2	+	880	1	FSM	ENSMUSG00000055926.4	ENSMUST00000239130.2	3067	1	0	2187	0	-2187	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTACTCCGGACCTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	119004989	119005869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_119005000_119005900
ONT_simulated_read_19713252	chr5	-	777	6	ISM	ENSMUSG00000023079.15	ENSMUST00000100650.10	3487	29	51627	32188	51297	-32188	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGGCTGGGACTGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	134433813	134419695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509
ONT_simulated_read_19714404	chr11	-	1369	1	ISM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	31715	1060	31715	-1060	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAGAGAAGGCCAGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	76937546	76936177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_76936200_76937500
ONT_simulated_read_1971649	chr2	-	282	2	ISM	ENSMUSG00000076437.12	ENSMUST00000102647.11	654	4	592	0	538	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAGCAAGTTTAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	84500460	84499564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_84499742_84500355
ONT_simulated_read_19717201	chr17	-	576	5	ISM	ENSMUSG00000024120.13	ENSMUST00000112308.9	4393	38	77678	1875	60452	-1875	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATATTCTTGCAGCATGAA	NA	NA	NA	NA	NA	NA	NA	NA	85020308	85014549	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_85014607_85015515_85015591_85017718_85017835_85017962_85018103_85020120
ONT_simulated_read_19723578	chr5	-	490	4	ISM	ENSMUSG00000029388.15	ENSMUST00000031334.15	2013	9	5376	924	5376	-924	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTCCACGCCAGCCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	124711818	124709199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748
ONT_simulated_read_19725189	chr7	-	170	1	FSM	ENSMUSG00000093826.2	ENSMUST00000178971.2	342	1	0	172	0	-172	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACTAGTGAAGGCGTTGA	NA	NA	NA	NA	NA	NA	NA	NA	10390747	10390577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_10390600_10390700
ONT_simulated_read_19727955	chr4	+	761	1	ISM	ENSMUSG00000000085.17	ENSMUST00000000087.13	3353	17	123848	269	60923	-247	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTAGCCCCAGTCTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	120386351	120387112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_120386400_120387100
ONT_simulated_read_19729233	chrX	-	1888	14	ISM	ENSMUSG00000031229.17	ENSMUST00000113573.8	10275	35	90993	3763	7601	-3763	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAACGATGTATTGACAAA	NA	NA	NA	NA	NA	NA	NA	NA	104882016	104844983	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864491_104867314_104867422_104869706_104869861_104874453_104874627_104874800_104874881_104876052_104876184_104879915_104880034_104881844
ONT_simulated_read_19730688	chr15	-	1087	1	ISM	ENSMUSG00000048175.14	ENSMUST00000143400.8	2226	4	29208	694	9242	383	mono-exon	FALSE	NA	NA	NA	NA	NA	330	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTTGGCATTCAGGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	98034298	98033211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_98033200_98034300
ONT_simulated_read_19731272	chr12	-	882	7	ISM	ENSMUSG00000020647.11	ENSMUST00000220434.2	4756	19	5331	48404	5331	-48404	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATATTGAATGATGGGA	NA	NA	NA	NA	NA	NA	NA	NA	4389169	4347586	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_4347624_4356423_4356565_4363025_4363122_4365685_4365866_4372867_4373046_4385780_4385879_4389017
ONT_simulated_read_19734478	chr16	+	2374	10	ISM	ENSMUSG00000022961.19	ENSMUST00000114037.9	8399	12	12064	420	12058	-420	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCATCTCCCCCTTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	91456830	91475663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91474988
ONT_simulated_read_19737169	chr16	-	694	5	ISM	ENSMUSG00000058240.15	ENSMUST00000122254.8	845	7	13810	0	2656	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAGGGGACATTCCAAAA	NA	NA	NA	NA	NA	NA	NA	NA	91511701	91486493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_91486804_91496064_91496177_91497959_91498094_91509082_91509156_91511636
ONT_simulated_read_19737259	chr6	-	456	1	ISM	ENSMUSG00000014551.9	ENSMUST00000140438.2	6073	4	8825	5228	3611	278	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCAGTCCTGGAACTGGC	NA	NA	NA	NA	NA	NA	NA	NA	92152189	92151733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_92151700_92152200
ONT_simulated_read_1973950	chr1	+	947	7	ISM	ENSMUSG00000026627.8	ENSMUST00000027940.6	2246	8	0	2512	0	-2512	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCGAGAGGAGTGCTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	191058108	191080599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_191058274_191060379_191060477_191070978_191071189_191072923_191073076_191077173_191077317_191078956_191079102_191080564
ONT_simulated_read_19740348	chr8	+	1745	10	ISM	ENSMUSG00000017478.16	ENSMUST00000176629.8	3672	18	0	9952	0	-9952	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGCGCCGATCCAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	123103419	123134146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_123103540_123110138_123110744_123113600_123113686_123114431_123114504_123124556_123124706_123124974_123125068_123125743_123125902_123128329_123128448_123129889_123130159_123134070
ONT_simulated_read_19740911	chr3	-	3132	16	ISM	ENSMUSG00000028184.13	ENST00000674168.1	5782	21	35915	11656	0	-6578	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGCAGAACCCTACATTAA	NA	NA	NA	NA	NA	NA	NA	NA	148660294	148533174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_148533222_148534112_148534205_148539497_148539565_148540939_148541161_148541987_148542198_148543199_148543374_148544744_148544951_148545280_148545407_148552484_148552669_148556471_148556658_148557530_148557635_148558202_148558497_148564368_148565170_148571235_148571346_148596047_148596262_148660198
ONT_simulated_read_19744314	chr16	+	316	1	ISM	ENSMUSG00000022601.12	ENSMUST00000050248.9	4920	11	0	34715	0	-34715	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTACTACCAGCGGCGGC	NA	NA	NA	NA	NA	NA	NA	NA	55794245	55794561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_55794200_55794600
ONT_simulated_read_19746164	chr8	-	2018	1	ISM	ENSMUSG00000061313.11	ENSMUST00000033975.9	4246	18	26918	0	8677	0	mono-exon	FALSE	NA	NA	NA	NA	NA	167	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGTGGCCTTATCTATC	NA	NA	NA	NA	NA	NA	NA	NA	26217390	26215372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26215400_26217400
ONT_simulated_read_1974657	chr3	-	515	5	ISM	ENSMUSG00000038170.16	ENSMUST00000045243.15	6185	17	21265	2518	21265	-2518	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	125	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAAGAAGCCTGGAGCGT	NA	NA	NA	NA	NA	NA	NA	NA	97654060	97648687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_97648762_97649804_97649918_97650480_97650619_97650801_97650919_97653987
ONT_simulated_read_1974659	chr11	-	446	4	ISM	ENSMUSG00000025155.16	ENSMUST00000106133.8	1762	14	2452	3148	2449	-3148	internal_fragment	FALSE	canonical	NA	NA	NA	NA	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGCTCTTTGGGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	120684772	120683179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120683326_120683516_120683621_120683853_120683937_120684659
ONT_simulated_read_19747780	chr9	-	2515	1	NIC	ENSMUSG00000045519.16	novel	4751	7	NA	NA	2805	913	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTATTTTGCTCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	20260456	20257941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_20257900_20260500
ONT_simulated_read_19751964	chr5	-	558	1	ISM	ENSMUSG00000106951.2	ENSMUST00000145042.2	3994	2	1727	2883	1727	-2883	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCTACCTGAAACCGGGCG	NA	NA	NA	NA	NA	NA	NA	NA	148930306	148929748	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_148929700_148930300
ONT_simulated_read_19752237	chr16	+	745	7	ISM	ENSMUSG00000022770.18	ENST00000422288.6	2870	23	19449	75118	19446	-74848	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTTATTTGAAAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	31503083	31615751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_31503113_31561923_31562089_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683
ONT_simulated_read_1975236	chr2	-	352	3	ISM	ENSMUSG00000010914.11	ENSMUST00000011058.9	2506	11	32379	12151	32328	6393	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGCTACTGCTGACTGT	NA	NA	NA	NA	NA	NA	NA	NA	102871479	102863570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_102863656_102865559_102865735_102871387
ONT_simulated_read_19752609	chr16	+	1814	14	ISM	ENSMUSG00000022779.17	ENSMUST00000023465.16	3073	18	184	3425	184	-3420	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACCAACCTTGGCATAGT	NA	NA	NA	NA	NA	NA	NA	NA	16688828	16707429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_16688920_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346
ONT_simulated_read_19753765	chr8	+	543	5	ISM	ENSMUSG00000031772.18	ENST00000478060.5	3698	22	157256	71265	157256	-71265	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATGAGACACAGACATAT	NA	NA	NA	NA	NA	NA	NA	NA	113500285	113537249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_113500371_113508154_113508262_113512407_113512528_113529681_113529880_113537216
ONT_simulated_read_19761815	chr9	-	1379	5	ISM	ENSMUSG00000035914.12	ENSMUST00000039788.11	3186	7	5188	1194	5188	-1194	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCTTTTTCTTCTTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	58443036	58432776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_58433645_58434801_58434838_58435734_58435777_58437878_58438014_58442738
ONT_simulated_read_1976269	chr10	+	551	4	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	0	3763	0	-3763	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	413	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCGTCCTGATGATGAACA	NA	NA	NA	NA	NA	NA	NA	NA	81012464	81014569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514
ONT_simulated_read_19764688	chrM	-	416	1	Antisense	novelGene_ENSMUSG00000064358.1_AS_novelGene_ENSMUSG00000064357.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAAGGCCTAGGAGATTT	NA	NA	NA	NA	NA	NA	NA	NA	8607	8191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chrM_-_8200_8600
ONT_simulated_read_19765352	chr15	+	807	10	ISM	ENSMUSG00000008690.16	ENSMUST00000074552.12	3299	20	178	3395	178	-3395	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGAGCCTGCCTCCCGGCT	NA	NA	NA	NA	NA	NA	NA	NA	89240116	89253634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586
ONT_simulated_read_19765353	chr1	-	621	1	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	8712	5349	8710	444	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGATCTGGTGTACAGAG	NA	NA	NA	NA	NA	NA	NA	NA	86278410	86277789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_86277800_86278400
ONT_simulated_read_19765359	chr8	-	487	3	NNC	ENSMUSG00000004996.10	novel	936	5	NA	NA	2930	-1695	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTCCGTCTTCTCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	84980964	84978229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_-_84978341_84980491_84980717_84980813
ONT_simulated_read_19765987	chr1	-	628	5	ISM	ENSMUSG00000060771.16	ENST00000674128.1	3027	16	20047	47014	20046	30622	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGCAGAGGGCAACAGAT	NA	NA	NA	NA	NA	NA	NA	NA	37874409	37840861	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_37840987_37843709_37843821_37846017_37846187_37873266_37873419_37874338
ONT_simulated_read_19768198	chr2	-	1435	5	ISM	ENSMUSG00000034101.15	ENST00000673683.1	5296	19	41283	1005	40442	-1005	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTTCCAGGTGCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	84439382	84432146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303
ONT_simulated_read_19770931	chr2	-	1830	1	ISM	ENSMUSG00000027010.17	ENSMUST00000151937.8	6351	18	92424	2433	92424	-2433	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAAATTTGTGATCTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	71105669	71103839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_71103800_71105700
ONT_simulated_read_19772601	chr11	+	1406	10	ISM	ENSMUSG00000006169.21	ENSMUST00000109261.11	3452	12	0	4314	0	-4314	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTTAGGCCCACCGCC	NA	NA	NA	NA	NA	NA	NA	NA	45742790	45797138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_45743020_45774536_45774642_45775158_45775256_45777257_45777367_45778212_45778378_45781448_45781627_45784697_45784945_45785886_45785957_45793037_45793113_45797007
ONT_simulated_read_1977473	chr2	+	1122	9	ISM	ENSMUSG00000026879.15	ENSMUST00000028239.8	2653	17	133	11478	133	-11476	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGAACTGGCGGGACCCA	NA	NA	NA	NA	NA	NA	NA	NA	35172524	35186426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_35172614_35173916_35174122_35174685_35174841_35180344_35180507_35182598_35182749_35183489_35183580_35184946_35185080_35186136_35186226_35186377
ONT_simulated_read_19774926	chr11	+	1012	10	ISM	ENSMUSG00000036620.15	ENSMUST00000041725.14	2429	15	5413	1612	5413	-1612	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGGAGCACGTGAACCCA	NA	NA	NA	NA	NA	NA	NA	NA	50121574	50124318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_50121693_50121787_50121929_50122017_50122152_50122565_50122613_50122850_50122965_50123133_50123210_50123390_50123506_50123771_50123903_50124102_50124211_50124290
ONT_simulated_read_19775278	chr4	-	394	3	NIC	ENSMUSG00000028943.19	novel	1142	5	NA	NA	610	-78	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTAGGCTACGACGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	152212772	152205655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_152205723_152208170_152208251_152212525
ONT_simulated_read_19775603	chr14	-	138	3	ISM	ENSMUSG00000002319.17	ENSMUST00000047131.16	3846	30	8294	625	8294	-625	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGCTCCTGACGTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	55864847	55863481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55863499_55863610_55863681_55864796
ONT_simulated_read_19781640	chr8	+	1430	2	ISM	ENSMUSG00000031618.14	ENSMUST00000109911.8	3804	8	-129	334158	59	-333025	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	137	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGGAAACAACAAAATCAAC	NA	NA	NA	NA	NA	NA	NA	NA	77628974	77636134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_77629169_77634898
ONT_simulated_read_19781859	chr9	-	1762	11	ISM	ENSMUSG00000032030.17	ENSMUST00000034529.14	3585	19	33396	499	33392	-499	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGAGGGTGGGGTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	53545415	53528822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_53529311_53532459_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284
ONT_simulated_read_19783356	chr9	+	514	1	FSM	ENSMUSG00000058838.10	ENSMUST00000078766.10	467	1	0	-47	0	47	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTACATTATTACATTAT	NA	NA	NA	NA	NA	NA	NA	NA	83291712	83292226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_83291700_83292200
ONT_simulated_read_19784640	chr11	-	1451	1	ISM	ENSMUSG00000010025.20	ENSMUST00000074127.14	3091	10	20882	0	20882	0	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGTGTGTTAATTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	61137129	61135678	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_61135700_61137100
ONT_simulated_read_1978547	chr7	-	1091	7	FSM	ENSMUSG00000030695.17	ENST00000569798.5	1270	7	86	93	86	-93	multi-exon	FALSE	canonical	NA	NA	NA	NA	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATCTCTAACCATGCCT	NA	NA	NA	NA	NA	NA	NA	NA	126396850	126394615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815
ONT_simulated_read_19785845	chr16	+	194	1	ISM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	0	65700	0	-64691	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCGCGGGCCAGGAGCGG	NA	NA	NA	NA	NA	NA	NA	NA	49519595	49519789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_49519600_49519800
ONT_simulated_read_1978704	chr7	+	444	4	ISM	ENSMUSG00000004610.5	ENSMUST00000004729.5	893	6	8807	77	8807	-77	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	277	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGGGGCGGATCTGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	43102313	43107147	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_43102382_43103941_43104005_43105902_43106062_43106993
ONT_simulated_read_1978730	chr7	-	1346	7	ISM	ENSMUSG00000036634.16	ENST00000361922.8	2332	11	3595	1159	3595	-821	internal_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGTCCCGGGGGCCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	30608697	30599776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_30599822_30600062_30600163_30600487_30600585_30601073_30601362_30606330_30606592_30607789_30608048_30608400
ONT_simulated_read_19789989	chr6	+	1030	10	ISM	ENSMUSG00000068328.10	ENSMUST00000092618.9	1769	12	234	790	234	-790	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGGGCTGTGGCTTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	83031735	83033999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958
ONT_simulated_read_19790797	chr18	-	1100	6	ISM	ENSMUSG00000024613.17	ENSMUST00000175934.8	4595	26	10085	18689	10085	-18689	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGAGCCCAGCCAAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	60971916	60965515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746
ONT_simulated_read_19790820	chr18	-	2365	7	ISM	ENSMUSG00000041891.17	ENSMUST00000048260.15	3581	14	9432	342	9414	-323	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGCTGTGGTTACCCATGC	NA	NA	NA	NA	NA	NA	NA	NA	66126278	66114150	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_66115782_66116895_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145
ONT_simulated_read_19791349	chr14	-	235	1	ISM	ENSMUSG00000022174.9	ENSMUST00000022781.8	878	3	18391	0	18129	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGTTCCTTCATGTTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	54473170	54472935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_54472900_54473200
ONT_simulated_read_19795082	chr12	-	290	1	FSM	ENSMUSG00000066491.5	ENSMUST00000149263.2	231	1	0	-59	0	59	mono-exon	FALSE	NA	NA	NA	NA	NA	1604	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCCTAAACTATGAAACATG	NA	NA	NA	NA	NA	NA	NA	NA	56420608	56420318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_56420300_56420600
ONT_simulated_read_19796438	chr1	-	781	6	ISM	ENSMUSG00000037351.10	ENSMUST00000043951.10	3248	11	7425	2422	7425	-2422	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGACTGAGAACCTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	36741664	36739616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_36739679_36740214_36740390_36740501_36740595_36740765_36740983_36741139_36741265_36741555
ONT_simulated_read_19802313	chr9	-	1188	1	ISM	ENSMUSG00000002028.14	ENST00000534358.8	16468	36	73142	3611	73142	-723	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTATTTAAATAGGATTT	NA	NA	NA	NA	NA	NA	NA	NA	44719450	44718262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44718300_44719400
ONT_simulated_read_19803350	chr16	-	1227	1	ISM	ENSMUSG00000046962.17	ENSMUST00000113734.9	6010	3	11794	2166	11766	160	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGTTGGTTGGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	97752027	97750800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_97750800_97752000
ONT_simulated_read_19803395	chr15	+	380	3	ISM	ENSMUSG00000022364.15	ENST00000287380.6	2959	20	-75	43916	35	-43916	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCGTTAGCTGATTATT	NA	NA	NA	NA	NA	NA	NA	NA	57775629	57783401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_57775788_57779365_57779513_57783326
ONT_simulated_read_19804515	chr13	-	1463	13	ISM	ENSMUSG00000021725.10	ENST00000514342.6	2376	23	102765	5405	102725	-5405	internal_fragment	TRUE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCACCAGCCAAAGAGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	117059194	117005041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_117005089_117005958_117006008_117008178_117008247_117013066_117013133_117015530_117015624_117029535_117029632_117029732_117029784_117031171_117031731_117032191_117032318_117039325_117039393_117047400_117047492_117047919_117047981_117059105
ONT_simulated_read_19804913	chr4	-	178	1	ISM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	31879	1160	31879	-1160	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTTTAGAGTTCTAAGG	NA	NA	NA	NA	NA	NA	NA	NA	25249942	25249764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_25249800_25249900
ONT_simulated_read_19805015	chr11	-	1781	16	ISM	ENSMUSG00000020923.18	ENSMUST00000079589.11	3286	20	2635	994	996	-277	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGGATGGCGGGGACTCT	NA	NA	NA	NA	NA	NA	NA	NA	102204871	102197743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723
ONT_simulated_read_19806139	chr13	-	757	1	ISM	ENSMUSG00000021549.15	ENSMUST00000109552.3	4563	25	72856	637	72856	-637	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTGTTAAAATGTTTACAA	NA	NA	NA	NA	NA	NA	NA	NA	85364292	85363535	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_85363500_85364300
ONT_simulated_read_1980698	chr4	-	744	5	ISM	ENSMUSG00000028952.13	ENSMUST00000066715.11	2218	11	6234	133	6234	-133	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGAGAGCTTTGCTAGC	NA	NA	NA	NA	NA	NA	NA	NA	152105884	152104363	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745
ONT_simulated_read_19807411	chr19	+	518	1	ISM	ENSMUSG00000034445.9	ENSMUST00000237814.2	3130	8	319	11821	0	-10540	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGTACCAGGCTTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	10554854	10555372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_10554900_10555400
ONT_simulated_read_19813123	chr3	-	556	1	NIC	ENSMUSG00000027679.14	novel	2499	6	NA	NA	2418	-855	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGGGGCCTCTTAATGTG	NA	NA	NA	NA	NA	NA	NA	NA	34132993	34132437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_34132400_34133000
ONT_simulated_read_19815176	chr5	-	533	4	ISM	ENSMUSG00000004849.15	ENSMUST00000111080.8	1353	5	2892	693	2892	-693	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	302	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGGCTGTTTCTCTCACCT	NA	NA	NA	NA	NA	NA	NA	NA	137072097	137064539	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137064646_137066271_137066410_137070622_137070732_137071917
ONT_simulated_read_19816660	chr14	-	326	1	ISM	ENSMUSG00000022076.11	ENSMUST00000022666.9	6645	11	412734	3307	412734	-772	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACATATTTGTGATATAGA	NA	NA	NA	NA	NA	NA	NA	NA	96343804	96343478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_96343500_96343800
ONT_simulated_read_19818414	chr6	+	1297	11	ISM	ENSMUSG00000030228.20	ENSMUST00000218528.2	2712	21	0	108549	0	-108549	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGCCAAGATCCATCTG	NA	NA	NA	NA	NA	NA	NA	NA	139682620	139805120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_139682752_139689031_139689147_139693824_139693956_139700442_139700632_139714415_139714510_139718134_139718230_139789613_139789795_139793287_139793396_139798515_139798609_139800993_139801124_139805090
ONT_simulated_read_19818549	chr15	-	174	1	ISM	ENSMUSG00000042564.14	ENSMUST00000109648.9	5187	19	9141	40066	0	-26135	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAGTATCCTTCTAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	79534016	79533842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79533800_79534000
ONT_simulated_read_19818687	chr19	-	1033	6	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	0	16865	0	-16865	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAGAGAAATGAGAAAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	60779081	60766419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
ONT_simulated_read_19821406	chr11	+	407	3	ISM	ENSMUSG00000020836.16	ENSMUST00000102493.8	2804	11	234	4781	234	-3798	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACACTGGCCCTGTGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	77353470	77356529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_77353581_77354677_77354937_77356491
ONT_simulated_read_19824881	chr11	-	1581	15	ISM	ENSMUSG00000018574.15	ENSMUST00000018718.8	2020	19	1030	75	1030	-75	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTAACCCCCTGGGAATC	NA	NA	NA	NA	NA	NA	NA	NA	69905183	69901144	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070
ONT_simulated_read_1982831	chr1	+	1398	1	FSM	ENSMUSG00000098923.2	ENSMUST00000183952.2	2824	1	13	1413	13	-1413	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGGCCTTTCAGTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	119453902	119455300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_119453900_119455300
ONT_simulated_read_19830600	chr9	+	744	5	ISM	ENSMUSG00000032363.16	ENST00000613213.4	4431	19	17360	7038	17360	-6934	internal_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAGCGGCTCCTCCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	90073036	90075109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_90073146_90073417_90073554_90073888_90074016_90074433_90074648_90074951
ONT_simulated_read_19832401	chrX	+	432	4	ISM	ENSMUSG00000000355.14	ENSMUST00000000365.3	783	6	0	7431	0	-7355	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGAGCAAATATCATGTGT	NA	NA	NA	NA	NA	NA	NA	NA	37689531	37694872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_37689656_37690805_37690959_37691452_37691551_37694815
ONT_simulated_read_1983372	chr10	-	1637	1	NIC	ENSMUSG00000034781.6	novel	3414	7	NA	NA	14204	-626	mono-exon	FALSE	NA	NA	NA	NA	NA	643	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTTAGCCTCTCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	81366820	81365183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_81365200_81366800
ONT_simulated_read_19834918	chr6	-	563	4	ISM	ENSMUSG00000029780.15	ENSMUST00000101367.9	1519	10	15132	551	15132	-551	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCGTGAGAAGACTTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	56863739	56859935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648
ONT_simulated_read_19837409	chr17	-	1903	1	ISM	ENSMUSG00000062202.15	ENSMUST00000168787.8	7058	11	355944	3118	351286	1414	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATCATCAGAGACCCAC	NA	NA	NA	NA	NA	NA	NA	NA	30439518	30437615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_30437600_30439500
ONT_simulated_read_19837556	chr15	-	289	1	ISM	ENSMUSG00000043501.6	ENSMUST00000044584.6	592	4	4381	0	4381	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTGTTAGCATTTTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	78735348	78735059	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_78735100_78735300
ONT_simulated_read_19837712	chr1	+	1660	1	ISM	ENSMUSG00000046062.6	ENSMUST00000052529.4	5594	2	591	6390	591	-6390	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTTTTAAATTTTAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	133059471	133061131	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_133059500_133061100
ONT_simulated_read_19837887	chr15	-	350	2	ISM	ENSMUSG00000054277.9	ENST00000437119.6	1464	14	46995	-229	46974	229	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCTTTAGTTCCAAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	83187401	83184651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_83184904_83187303
ONT_simulated_read_19843057	chr14	-	1414	14	ISM	ENSMUSG00000063142.16	ENSMUST00000163322.3	3162	26	211623	132977	58508	1	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAGTTTATTTTCATCTA	NA	NA	NA	NA	NA	NA	NA	NA	23641749	23492059	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_23492148_23501666_23501736_23513168_23513279_23544606_23544763_23551192_23551263_23555241_23555325_23558104_23558211_23559857_23559969_23576603_23576696_23578417_23578589_23580286_23580363_23593098_23593175_23640708_23640821_23641655
ONT_simulated_read_1984404	chr5	+	756	1	ISM	ENSMUSG00000029227.16	ENSMUST00000080164.12	4673	17	61955	631	61856	-631	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGCATGAGCCAGAAGTA	NA	NA	NA	NA	NA	NA	NA	NA	74758064	74758820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_74758100_74758800
ONT_simulated_read_19846606	chr19	-	176	2	ISM	ENSMUSG00000024958.14	ENST00000539851.5	1385	6	1745	380	1728	-292	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGGACCACTCCTCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	6916479	6915821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6915898_6916379
ONT_simulated_read_1984963	chr18	-	883	1	ISM	ENSMUSG00000053644.14	ENSMUST00000174518.8	4131	20	45959	1388	35239	495	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGTGCCGTTGCTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	56660064	56659181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_56659200_56660100
ONT_simulated_read_19850031	chr11	-	1456	1	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	30572	0	30516	0	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	NA	NA	NA	NA	NA	NA	NA	40593677	40592221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_40592200_40593700
ONT_simulated_read_19850282	chr11	+	1717	10	ISM	ENSMUSG00000037331.16	ENSMUST00000178636.2	6617	19	0	13947	0	-13944	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTGAGAGCTGGATTGAA	NA	NA	NA	NA	NA	NA	NA	NA	57899889	57938913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_57900374_57931216_57931279_57931515_57931582_57932303_57932479_57933055_57933185_57933261_57933469_57933569_57933733_57934731_57934877_57938520_57938696_57938802
ONT_simulated_read_19853136	chr14	-	767	6	ISM	ENSMUSG00000041594.19	ENST00000328767.9	2047	15	33465	13281	33465	-13281	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAATAACCTCGGGAATA	NA	NA	NA	NA	NA	NA	NA	NA	123182241	123170592	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085
ONT_simulated_read_19853515	chr6	-	3143	1	ISM	ENSMUSG00000056429.5	ENSMUST00000070524.5	5013	4	4908	518	4908	-518	mono-exon	FALSE	NA	NA	NA	NA	NA	323	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCCTAGTCTAGAATACC	NA	NA	NA	NA	NA	NA	NA	NA	72589075	72585932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_72585900_72589100
ONT_simulated_read_1985412	chr5	-	780	7	ISM	ENSMUSG00000029472.14	ENSMUST00000196640.5	2422	17	19067	3969	19060	-3959	internal_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGAAGCTCTGGCCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	122940283	122929752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192
ONT_simulated_read_1985577	chr4	+	436	5	ISM	ENSMUSG00000028910.13	ENSMUST00000030742.11	1337	10	14293	2712	14293	-2712	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTATGGGGGAATGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	131585073	131592385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_131585212_131588071_131588175_131589086_131589190_131590228_131590303_131592367
ONT_simulated_read_19857291	chr6	-	3861	5	ISM	ENSMUSG00000001156.10	ENSMUST00000001184.10	4666	6	544	562	544	-562	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAATACTTTTCTTTAAC	NA	NA	NA	NA	NA	NA	NA	NA	86645599	86624585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_86628062_86628423_86628584_86630066_86630182_86640052_86640083_86645519
ONT_simulated_read_19857531	chr17	-	1013	1	FSM	ENSMUSG00000043801.8	ENSMUST00000052440.8	685	1	0	-328	0	328	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTACTAAACCTCAAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	17566402	17565389	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_17565400_17566400
ONT_simulated_read_19858436	chr3	+	2522	19	ISM	ENSMUSG00000025437.16	ENSMUST00000197748.5	4183	24	15409	1110	15409	-826	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATTAAAATGTTATATAAG	NA	NA	NA	NA	NA	NA	NA	NA	152067534	152098144	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080527_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
ONT_simulated_read_1986308	chr2	-	1128	7	ISM	ENSMUSG00000026927.18	ENSMUST00000114100.10	2099	9	1619	679	1619	-679	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCATCTGCAGTACGGGG	NA	NA	NA	NA	NA	NA	NA	NA	26277684	26273492	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567
ONT_simulated_read_19863435	chr2	-	615	8	ISM	ENSMUSG00000041777.13	ENSMUST00000058615.10	2821	10	134	4559	134	-4559	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCACTGAAACGAAATGTAC	NA	NA	NA	NA	NA	NA	NA	NA	73142911	73118007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_73118060_73134083_73134202_73136233_73136283_73136620_73136686_73136771_73136783_73137198_73137273_73140800_73140896_73142760
ONT_simulated_read_19867878	chr14	-	2450	1	ISM	ENSMUSG00000021824.14	ENSMUST00000154460.8	6732	9	15791	2768	15536	1804	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCAATGCAATGGAAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	21086727	21084277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_21084300_21086700
ONT_simulated_read_19870209	chr2	+	439	4	ISM	ENSMUSG00000039356.16	ENSMUST00000038474.14	1686	9	5984	765	5971	12	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGGACTGGGCACCCCC	NA	NA	NA	NA	NA	NA	NA	NA	31566710	31570596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_31566749_31568462_31568640_31569862_31569992_31570501
ONT_simulated_read_19870212	chr7	-	686	5	ISM	ENSMUSG00000030934.10	ENSMUST00000084500.8	2152	10	6294	5194	0	-4421	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCCCATCCAGGGTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	132171833	132164400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_132164439_132165935_132166064_132168497_132168594_132168794_132169020_132171634
ONT_simulated_read_19872989	chr4	+	1539	15	ISM	ENSMUSG00000028330.9	ENSMUST00000030014.9	3010	23	17182	289	17182	-289	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAGAGTGAGGAATATGA	NA	NA	NA	NA	NA	NA	NA	NA	46155794	46172114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_46155848_46156759_46156824_46157822_46157934_46159658_46159724_46161260_46161324_46162091_46162167_46162960_46163065_46165165_46165289_46166737_46166841_46167301_46167396_46168450_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
ONT_simulated_read_19873070	chr17	+	827	1	NIC	ENSMUSG00000023067.15	novel	922	3	NA	NA	0	-851	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACGTGGCCTTGTCGCTG	NA	NA	NA	NA	NA	NA	NA	NA	29316873	29317700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_+_29316900_29317700
ONT_simulated_read_19873488	chr12	+	2212	17	FSM	ENSMUSG00000007411.17	ENST00000677360.1	3165	17	521	432	0	31	multi-exon	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGAGCGAAGGCTGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	111541484	111622191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_111541536_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
ONT_simulated_read_1987499	chr17	+	331	1	NIC	ENSMUSG00000062691.11	novel	602	5	NA	NA	3459	0	mono-exon	FALSE	NA	NA	NA	NA	NA	272	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	79227404	79227735	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_+_79227400_79227700
ONT_simulated_read_19875031	chr14	-	297	3	ISM	ENSMUSG00000059456.14	ENSMUST00000178730.8	3863	30	57174	885	57174	-299	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCCTGGCTGTGGATGCC	NA	NA	NA	NA	NA	NA	NA	NA	66393827	66391591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_66391719_66393420_66393502_66393738
ONT_simulated_read_19875267	chr3	-	1617	1	ISM	ENSMUSG00000025759.12	ENSMUST00000026859.11	3151	12	27166	0	15692	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATGAAGAGGACCTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	40774154	40772537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_40772500_40774200
ONT_simulated_read_19877755	chr12	-	848	1	NIC	ENSMUSG00000021287.13	novel	2422	8	NA	NA	5294	-633	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGCCTGGCAGGTGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	111771107	111770259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_111770300_111771100
ONT_simulated_read_19883104	chr10	-	1626	5	ISM	ENSMUSG00000034781.6	ENSMUST00000043604.6	3414	7	11809	1179	11809	-1179	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	332	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCCTAAACTAGAGGACC	NA	NA	NA	NA	NA	NA	NA	NA	81369215	81365736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_81366820_81366925_81367080_81367155_81367286_81368229_81368359_81369085
ONT_simulated_read_19883825	chr5	+	770	1	NIC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	120	-1824	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGGGTGCTGGAAACTG	NA	NA	NA	NA	NA	NA	NA	NA	129792760	129793530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_+_129792800_129793500
ONT_simulated_read_19884715	chr10	-	3507	2	ISM	ENSMUSG00000060002.15	ENSMUST00000117440.8	4863	9	28548	64	28393	-64	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAAATCTTTTGTTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	88311387	88305439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_88308847_88311287
ONT_simulated_read_19885582	chr19	-	1634	14	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	3811	-7597	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGCTGTGCAGCTTATCT	NA	NA	NA	NA	NA	NA	NA	NA	27403414	27373694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_27373783_27376281_27376501_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195
ONT_simulated_read_19885625	chrX	+	946	7	ISM	ENSMUSG00000025261.19	ENSMUST00000112622.8	14168	81	29314	56676	29314	-56341	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCATGGATGCATCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	150647557	150661737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_150647770_150653454_150653513_150654475_150654653_150657528_150657775_150659290_150659425_150659808_150659904_150661713
ONT_simulated_read_1988592	chr7	+	687	9	ISM	ENSMUSG00000040268.18	ENST00000392799.7	1735	11	4620	3269	4620	-1446	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGGCGCCATCGTAGCA	NA	NA	NA	NA	NA	NA	NA	NA	130484081	130510105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065
ONT_simulated_read_19891256	chr6	-	928	1	ISM	ENSMUSG00000038784.14	ENSMUST00000202143.4	3202	11	110197	436	110197	-430	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAGGAAGGAAAAGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	35000363	34999435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_34999400_35000400
ONT_simulated_read_19891633	chr1	-	633	7	ISM	ENSMUSG00000026361.10	ENST00000635846.1	2513	14	11323	9962	11323	-9962	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTCACAGTACCTTACAG	NA	NA	NA	NA	NA	NA	NA	NA	143567054	143493075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_143493179_143503239_143503328_143503583_143503620_143510769_143510828_143553376_143553594_143561660_143561750_143567012
ONT_simulated_read_19893197	chr5	-	2040	16	ISM	ENSMUSG00000106864.4	ENSMUST00000202639.4	4200	21	7056	1149	1440	-1149	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGCCCACCGTGTACAGC	NA	NA	NA	NA	NA	NA	NA	NA	31330405	31315013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125
ONT_simulated_read_1989498	chr17	-	1104	3	ISM	ENSMUSG00000024048.16	ENSMUST00000233089.2	947	4	411	-244	411	244	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	4374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCATTAGCTCTGCCGCC	NA	NA	NA	NA	NA	NA	NA	NA	71303891	71301037	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_71301780_71303104_71303267_71303691
ONT_simulated_read_19895965	chr2	+	1615	10	ISM	ENSMUSG00000039463.15	ENSMUST00000073873.5	4429	16	29434	2362	29434	0	3prime_fragment	TRUE	non_canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGCATGGCAGGGTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	167293074	167316556	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_167293271_167299246_167299386_167301568_167301675_167307260_167307378_167309604_167309688_167310883_167310996_167313301_167313523_167315353_167315501_167315947_167316096_167316210
ONT_simulated_read_19898199	chr2	-	416	1	ISM	ENSMUSG00000039195.5	ENSMUST00000146423.2	2618	2	2346	2004	2346	0	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTCTTCTTTGTGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	32269528	32269112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_32269100_32269500
ONT_simulated_read_19900748	chr7	+	374	4	ISM	ENSMUSG00000003423.16	ENSMUST00000210139.2	1077	10	46	2322	35	-2321	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGAGCCTGGGAGAGCCG	NA	NA	NA	NA	NA	NA	NA	NA	44803772	44807167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_44803845_44805729_44805824_44806155_44806223_44807026
ONT_simulated_read_19902316	chr10	-	671	6	ISM	ENSMUSG00000019868.17	ENSMUST00000154132.8	1974	8	20585	964	2733	-383	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	216	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCACAGGCAGGGAGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	14560719	14531462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_14531590_14536809_14536897_14543675_14543853_14551677_14551787_14559807_14559884_14560624
ONT_simulated_read_1990558	chr7	-	514	4	ISM	ENSMUSG00000038886.11	ENST00000559717.6	3613	22	7051	8179	7051	-8179	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTTCCTCGTCTACGG	NA	NA	NA	NA	NA	NA	NA	NA	80012425	80009464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80009507_80010643_80010881_80012046_80012213_80012356
ONT_simulated_read_19906842	chr11	-	2346	10	ISM	ENSMUSG00000061306.17	ENSMUST00000103018.11	4578	17	18486	1236	18452	-744	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCTGGCCTCTCATCCAG	NA	NA	NA	NA	NA	NA	NA	NA	120023686	119996021	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_119996863_119997259_119997437_119999292_119999317_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502
ONT_simulated_read_19908763	chr17	-	790	7	ISM	ENSMUSG00000036820.13	ENST00000648227.1	1167	9	36	1893	36	-1893	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATGGCCGCCATACACTG	NA	NA	NA	NA	NA	NA	NA	NA	24382275	24376779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169
ONT_simulated_read_19912429	chr3	-	1121	1	NIC	ENSMUSG00000028188.14	novel	1807	14	NA	NA	6283	-1031	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTATATAGAAAAATGTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	146193317	146192196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_146192200_146193300
ONT_simulated_read_19914091	chr18	+	946	6	ISM	ENSMUSG00000000420.16	ENSMUST00000178605.2	3796	12	5726	17301	5726	-17301	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACGATGCTGGAATGGAT	NA	NA	NA	NA	NA	NA	NA	NA	24371379	24402566	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_24371543_24379106_24379282_24387574_24387742_24397381_24397590_24400584_24400756_24402504
ONT_simulated_read_19916672	chr5	-	1591	7	ISM	ENSMUSG00000045302.14	ENST00000406567.7	1721	8	753	-65	753	45	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCCCAGGTCAGGTAGCC	NA	NA	NA	NA	NA	NA	NA	NA	31116757	31112341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_31113082_31113273_31113434_31113605_31113679_31115576_31115702_31115814_31115896_31116059_31116281_31116566
ONT_simulated_read_19918192	chrX	+	1463	10	NIC	ENSMUSG00000041658.13	novel	2258	11	NA	NA	6	-80	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCGCAATGCCAGAAAACA	NA	NA	NA	NA	NA	NA	NA	NA	151922982	151954234	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_+_151923572_151924359_151924394_151926971_151927072_151933357_151933425_151936126_151936350_151941190_151941287_151943397_151943521_151946073_151946166_151953182_151953299_151954211
ONT_simulated_read_19920278	chr13	-	296	3	ISM	ENSMUSG00000044734.17	ENSMUST00000076352.8	1918	7	3678	3350	3678	-3350	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAAATTTCCATTTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	33031490	33029424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_33029460_33029653_33029797_33031372
ONT_simulated_read_19921099	chr12	+	603	5	ISM	ENSMUSG00000112449.2	ENSMUST00000110708.4	3646	16	266	18594	266	-18594	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATACTCTTTATAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	55202154	55217764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_55202366_55211014_55211125_55211980_55212073_55213093_55213179_55217659
ONT_simulated_read_19923188	chr8	-	688	5	ISM	ENSMUSG00000033732.11	ENSMUST00000042012.7	4525	26	21126	10507	21126	-10507	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGAGGGCATTGTTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	111552282	111547377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133
ONT_simulated_read_1992660	chr12	-	1586	1	ISM	ENSMUSG00000066441.15	ENSMUST00000161204.8	3262	7	16065	306	12881	-306	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGGCCCCTGGGTTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	79223002	79221416	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_79221400_79223000
ONT_simulated_read_19927331	chr9	-	1618	8	ISM	ENSMUSG00000050730.18	ENST00000298815.13	3280	24	227353	207	227353	-207	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTTCTTTTTAAATATA	NA	NA	NA	NA	NA	NA	NA	NA	9011442	8997163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_8997687_8998166_8998247_9003620_9003684_9005734_9005892_9006257_9006642_9007968_9008114_9009277_9009438_9011336
ONT_simulated_read_19928556	chr8	+	1078	6	ISM	ENSMUSG00000025810.10	ENST00000374821.9	1965	11	-25	53655	-25	-53655	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCGCCTGAACTACCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	129085877	129160790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_129086114_129089699_129089875_129145193_129145376_129152222_129152451_129158372_129158529_129160689
ONT_simulated_read_19931122	chr7	-	341	1	NIC	ENSMUSG00000030655.16	novel	15557	63	NA	NA	19332	15	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTATTTCTGGTTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	117792943	117792602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_117792600_117792900
ONT_simulated_read_19931425	chr3	-	1433	1	ISM	ENSMUSG00000043165.8	ENSMUST00000058150.8	1779	2	1147	292	1147	-292	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACCAGACCCAGCAGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	91989302	91987869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_91987900_91989300
ONT_simulated_read_19933259	chr16	-	342	4	ISM	ENSMUSG00000041974.11	ENSMUST00000040248.9	3282	20	249578	439	249578	-439	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGAGCCACTGCTGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	15715137	15707526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087
ONT_simulated_read_1993645	chr11	-	284	1	ISM	ENSMUSG00000001034.18	ENSMUST00000101085.9	3254	6	2580	2591	2580	-2591	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCCCGGAGCTCATGCTT	NA	NA	NA	NA	NA	NA	NA	NA	61382512	61382228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_61382200_61382500
ONT_simulated_read_19938164	chr11	+	456	1	FSM	ENSMUSG00000081929.2	ENSMUST00000121547.2	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2568	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGACTCTGGCCAATGCCC	NA	NA	NA	NA	NA	NA	NA	NA	116273575	116274031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_116273600_116274000
ONT_simulated_read_19942988	chr6	+	436	2	ISM	ENSMUSG00000032652.14	ENST00000228865.3	1362	4	21006	357	20903	182	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCACTTCTTTTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	134828120	134833305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_134828188_134832936
ONT_simulated_read_19946867	chr3	-	749	1	ISM	ENSMUSG00000037174.19	ENSMUST00000194641.6	5919	10	83715	3480	20420	-515	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGTGAACTACACATTGA	NA	NA	NA	NA	NA	NA	NA	NA	51164369	51163620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_51163600_51164400
ONT_simulated_read_19947307	chr6	-	970	1	Genic_Genomic	ENSMUSG00000068327.6	novel	NA	NA	NA	NA	933	1	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCAGTCTCCAGTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	83046273	83045303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr6_-_83045300_83046300
ONT_simulated_read_19947485	chr4	-	1270	4	ISM	ENSMUSG00000029007.9	ENSMUST00000030865.9	3996	5	4043	2606	3978	1908	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATTCTTACTGCCAGATC	NA	NA	NA	NA	NA	NA	NA	NA	148168445	148164123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415
ONT_simulated_read_19948462	chr4	+	1051	7	ISM	ENSMUSG00000011257.20	ENSMUST00000106241.8	3050	15	12132	0	11184	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATGCCAGTTTTATGTT	NA	NA	NA	NA	NA	NA	NA	NA	123188756	123192625	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_123188874_123188994_123189067_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
ONT_simulated_read_19950395	chr9	-	442	1	ISM	ENSMUSG00000032508.9	ENSMUST00000035092.7	1960	6	3167	499	3092	-499	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGTGGATTTCTCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	119165940	119165498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_119165500_119165900
ONT_simulated_read_19951650	chr3	-	1366	2	ISM	ENSMUSG00000086968.9	ENSMUST00000146337.3	1636	3	1486	-566	1486	566	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCCCCAGGTCTCATGT	NA	NA	NA	NA	NA	NA	NA	NA	107801522	107799613	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_107800824_107801366
ONT_simulated_read_19955858	chr3	-	372	3	ISM	ENSMUSG00000027800.15	ENSMUST00000171384.8	2855	5	1963	2116	1963	-243	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	188	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTATTTCACTGTAATTT	NA	NA	NA	NA	NA	NA	NA	NA	57200347	57195147	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_57195192_57197109_57197291_57200200
ONT_simulated_read_19957053	chr1	-	1204	1	ISM	ENSMUSG00000025935.11	ENSMUST00000027068.11	2938	11	23532	477	23532	-477	mono-exon	FALSE	NA	NA	NA	NA	NA	462	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATATATATATTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	13636602	13635398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_13635400_13636600
ONT_simulated_read_19957132	chr10	+	825	6	ISM	ENSMUSG00000006344.18	ENST00000398292.3	2094	12	14387	5222	14387	4550	internal_fragment	FALSE	canonical	NA	NA	NA	NA	158	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGAGCAAGGCCTCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	75439914	75445785	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_75439997_75440476_75440635_75441089_75441237_75444584_75444722_75445032_75445227_75445678
ONT_simulated_read_19958890	chr11	-	169	1	Antisense	novelGene_ENSMUSG00000017774.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGGAGGGGGTTCGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	75547005	75546836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr11_-_75546800_75547000
ONT_simulated_read_19959894	chr9	-	266	1	FSM	ENSMUSG00000111686.2	ENSMUST00000213253.2	622	1	0	356	0	-356	mono-exon	FALSE	NA	NA	NA	NA	NA	211	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTGCCCCCAACACTTT	NA	NA	NA	NA	NA	NA	NA	NA	54732566	54732300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_54732300_54732600
ONT_simulated_read_1996058	chr8	-	580	1	ISM	ENSMUSG00000031667.17	ENSMUST00000120426.9	1687	9	18530	258	17184	-258	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGGGGTAAAAGTGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	91839249	91838669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_91838700_91839200
ONT_simulated_read_19961073	chr19	+	1405	1	ISM	ENSMUSG00000025209.6	ENSMUST00000026227.3	3488	5	0	4800	0	-3795	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCCAACCCTTTCCCTAC	NA	NA	NA	NA	NA	NA	NA	NA	44994996	44996401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_44995000_44996400
ONT_simulated_read_19963522	chr17	-	2373	19	ISM	ENSMUSG00000024170.16	ENSMUST00000024987.6	3434	21	2647	247	2025	-247	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGCTAAAAATACTGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	25332232	25318797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_25319095_25320272_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326370_25329200_25329304_25329680_25329829_25330089_25330159_25331953
ONT_simulated_read_1996777	chr1	-	1297	8	ISM	ENSMUSG00000026171.13	ENSMUST00000027357.12	1479	10	2639	0	2619	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTATGTGGTATGACTCTT	NA	NA	NA	NA	NA	NA	NA	NA	74637917	74632906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_74633562_74633718_74633854_74634367_74634461_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851
ONT_simulated_read_1997066	chr17	-	510	1	Genic_Genomic	ENSMUSG00000095677.3	novel	NA	NA	NA	NA	6566	113	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACAGTGCACAGCCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	6916733	6916223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr17_-_6916200_6916700
ONT_simulated_read_19972920	chrX	-	761	1	ISM	ENSMUSG00000050379.16	ENSMUST00000053456.11	4673	11	73130	2320	73130	-735	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGCCATCCCAATGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	36180179	36179418	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_36179400_36180200
ONT_simulated_read_19975139	chr12	-	1277	6	ISM	ENSMUSG00000035021.14	ENST00000360310.6	5659	27	63094	19136	63073	-19136	internal_fragment	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTGACATATCCCAGATG	NA	NA	NA	NA	NA	NA	NA	NA	54970048	54959471	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_54959526_54963252_54963853_54965222_54965348_54967822_54967931_54969227_54969394_54969824
ONT_simulated_read_19977279	chr9	+	1739	11	ISM	ENSMUSG00000034252.15	ENSMUST00000165607.9	3495	24	46546	7080	46546	-7080	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCAAAGTGAGAATGGCC	NA	NA	NA	NA	NA	NA	NA	NA	80021320	80044108	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739
ONT_simulated_read_19980306	chr7	-	139	1	ISM	ENSMUSG00000030701.18	ENSMUST00000107046.8	2793	6	11894	2029	11753	0	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCTGGATGTGCATGT	NA	NA	NA	NA	NA	NA	NA	NA	100294266	100294127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_100294100_100294300
ONT_simulated_read_1998039	chr18	+	1400	4	ISM	ENSMUSG00000024384.5	ENSMUST00000212675.2	2936	15	34	14115	34	-14115	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGAAGACAAGGACCTGT	NA	NA	NA	NA	NA	NA	NA	NA	32200854	32216457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_32201093_32203159_32203276_32212723_32213631_32216318
ONT_simulated_read_19984045	chr9	-	1037	10	ISM	ENSMUSG00000032126.17	ENST00000544387.5	1140	11	469	-5	466	5	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTCTTCTGATAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	44252530	44247706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511
ONT_simulated_read_19984515	chr6	+	2169	9	ISM	ENSMUSG00000029869.8	ENSMUST00000114732.3	3762	18	0	3668	0	-3661	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGGGCACGGACTGCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	41582415	41593775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_41582755_41589577_41589650_41590148_41590353_41590685_41590751_41591012_41591776_41592422_41592579_41592850_41593202_41593393_41593519_41593681
ONT_simulated_read_19989224	chr5	+	762	6	ISM	ENSMUSG00000029017.14	ENSMUST00000030882.12	1615	13	5599	704	5599	-704	internal_fragment	FALSE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATCTTCTGAAAACAAAC	NA	NA	NA	NA	NA	NA	NA	NA	21947737	21961446	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953908_21961399
ONT_simulated_read_19990138	chr4	-	1130	9	ISM	ENSMUSG00000040606.15	ENST00000376030.7	2105	14	63084	2116	63084	-2116	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCGCTTTGGGACACCACC	NA	NA	NA	NA	NA	NA	NA	NA	141874435	141834215	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_141834238_141835856_141836024_141836587_141836690_141839418_141839651_141844395_141844515_141845385_141845592_141868983_141869108_141870604_141870656_141874328
ONT_simulated_read_19992998	chr3	+	968	11	ISM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	3665	1708	3665	-1708	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCAAACAACACGACGGTG	NA	NA	NA	NA	NA	NA	NA	NA	32766320	32779414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395
ONT_simulated_read_19993303	chr11	-	1537	1	ISM	ENSMUSG00000018501.18	ENSMUST00000069456.11	3171	9	53863	541	34981	-541	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGACTTTGTATTTATG	NA	NA	NA	NA	NA	NA	NA	NA	62294286	62292749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_62292700_62294300
ONT_simulated_read_19997802	chr10	-	516	6	ISM	ENSMUSG00000020263.15	ENSMUST00000020500.14	3020	21	24056	14149	24056	-14149	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTCATCCAGAAGACTGG	NA	NA	NA	NA	NA	NA	NA	NA	83460546	83450045	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482
ONT_simulated_read_19998397	chrX	-	2136	11	ISM	ENSMUSG00000031328.17	ENSMUST00000033699.13	8312	47	18066	0	17983	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAGTCCTATGTACAACC	NA	NA	NA	NA	NA	NA	NA	NA	73272095	73267146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_73267584_73268357_73268562_73268645_73268865_73269003_73269181_73269807_73269941_73270466_73270583_73270803_73270942_73271096_73271364_73271457_73271581_73271691_73271845_73271926
ONT_simulated_read_19999271	chr18	+	346	1	ISM	ENSMUSG00000054477.17	ENSMUST00000183850.8	3546	11	291149	125384	0	-125063	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCCATCGGCGCGCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	45693220	45693566	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_45693200_45693600
ONT_simulated_read_2000054	chr8	-	1842	1	ISM	ENSMUSG00000046707.10	ENSMUST00000056919.9	3773	12	40448	442	40401	-442	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGAGCCGGGAAGGCTAG	NA	NA	NA	NA	NA	NA	NA	NA	96175007	96173165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_96173200_96175000
ONT_simulated_read_2005914	chr19	-	1609	1	ISM	ENSMUSG00000041360.9	ENSMUST00000076219.6	3471	18	39519	0	39519	0	mono-exon	FALSE	NA	NA	NA	NA	NA	292	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTATTTGTTTGTTTGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	27367706	27366097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_27366100_27367700
ONT_simulated_read_2007771	chr14	-	837	7	ISM	ENSMUSG00000022023.7	ENSMUST00000022601.7	3704	10	297	10187	297	-10187	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAATACAGAAACAGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	79718663	79707563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_79707621_79708126_79708174_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
ONT_simulated_read_2008582	chr3	+	1510	10	ISM	ENSMUSG00000028048.12	ENSMUST00000077367.11	1779	11	12	345	0	-288	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGAGTGGCGTTGGTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	89110246	89115641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89110394_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618
ONT_simulated_read_2009489	chr2	-	522	4	ISM	ENSMUSG00000047617.12	ENSMUST00000114261.9	981	7	777	0	777	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGTTGTGAAGATTGGC	NA	NA	NA	NA	NA	NA	NA	NA	25350329	25349493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178
ONT_simulated_read_2010021	chr1	-	1069	10	ISM	ENSMUSG00000006010.15	ENSMUST00000111913.9	3273	14	214	14227	-104	-13011	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAGCAACAGACCCAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	150268617	150251282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
ONT_simulated_read_2011480	chr12	+	241	3	ISM	ENSMUSG00000054309.10	ENSMUST00000222968.2	1858	13	5387	13158	5387	-13158	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCATGGACAAAATCGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	21341786	21345079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_21341850_21343226_21343356_21345030
ONT_simulated_read_201180	chr4	-	2113	9	ISM	ENSMUSG00000053841.16	ENSMUST00000084264.12	4847	10	1243	2179	1243	-2179	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCATTCACAGGTGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	129533355	129522054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021
ONT_simulated_read_2018798	chr19	+	478	2	ISM	ENSMUSG00000035342.15	ENSMUST00000179108.9	2798	5	0	5361	0	-5280	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATCCCCGGGAACATCAG	NA	NA	NA	NA	NA	NA	NA	NA	45003638	45010189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_45003753_45009825
ONT_simulated_read_2019467	chr12	-	2036	4	ISM	ENSMUSG00000034442.12	ENSMUST00000116420.4	2066	5	1438	0	1438	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTAATTCAAGGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	73332045	73326784	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408
ONT_simulated_read_2020202	chr10	-	1237	1	ISM	ENSMUSG00000020027.19	ENSMUST00000172070.8	2153	3	2375	383	2174	-383	mono-exon	FALSE	NA	NA	NA	NA	NA	544	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGACTTCTCTCTTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	95248971	95247734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_95247700_95249000
ONT_simulated_read_2020761	chr17	+	1890	13	ISM	ENSMUSG00000024069.15	ENSMUST00000179074.9	1938	14	6291	0	1	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGAGGTATATTCTACT	NA	NA	NA	NA	NA	NA	NA	NA	74708906	74731004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_74708994_74710998_74711084_74712679_74712723_74714200_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
ONT_simulated_read_202114	chr6	-	1007	10	ISM	ENSMUSG00000003476.17	ENSMUST00000114374.9	1440	12	13104	62	13104	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCACCGTCTGCCCGGC	NA	NA	NA	NA	NA	NA	NA	NA	55081794	55068259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_55068404_55069497_55069540_55069936_55070073_55070263_55070350_55076196_55076270_55077047_55077109_55077606_55077761_55079735_55079854_55080152_55080260_55081708
ONT_simulated_read_2021492	chr14	+	1208	9	ISM	ENSMUSG00000021916.17	ENSMUST00000022476.9	2018	10	5009	262	5009	-261	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAAGGTAACAGTTGTAGG	NA	NA	NA	NA	NA	NA	NA	NA	30728415	30733686	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
ONT_simulated_read_2021662	chr10	-	567	5	ISM	ENSMUSG00000020263.15	ENSMUST00000020500.14	3020	21	27942	11423	27942	-11423	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAGGTAAAGCTTTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	83456660	83447319	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_83447357_83448575_83448765_83450007_83450167_83453210_83453294_83456561
ONT_simulated_read_2022690	chr14	+	431	6	ISM	ENSMUSG00000021950.16	ENST00000611655.1	814	9	21	3572	0	-3572	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGATTATGGGAACCGAT	NA	NA	NA	NA	NA	NA	NA	NA	33807981	33816373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_33808034_33811467_33811559_33812563_33812659_33813757_33813872_33815840_33815901_33816354
ONT_simulated_read_2024798	chr1	-	790	1	FSM	ENSMUSG00000102840.2	ENSMUST00000192600.2	1624	1	526	308	526	-308	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTTAGGAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	191553579	191552789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_191552800_191553600
ONT_simulated_read_2025882	chr7	-	869	8	ISM	ENSMUSG00000007783.11	ENSMUST00000212836.2	2716	19	4310	3433	3404	-3225	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGCACCCTGACCCTACC	NA	NA	NA	NA	NA	NA	NA	NA	44619889	44612228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44612284_44613327_44613434_44614507_44614691_44614794_44614991_44616049_44616135_44616220_44616329_44616481_44616557_44619828
ONT_simulated_read_202800	chr18	-	1108	1	NIC	ENSMUSG00000024592.16	novel	2400	5	NA	NA	17432	799	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCCAGAATCTTGACATT	NA	NA	NA	NA	NA	NA	NA	NA	57090994	57089886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_57089900_57091000
ONT_simulated_read_2031150	chr12	+	254	3	ISM	ENSMUSG00000054309.10	ENSMUST00000222968.2	1858	13	0	16442	0	-16442	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTACATTGACCTTATCG	NA	NA	NA	NA	NA	NA	NA	NA	21336399	21341795	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_21336546_21340248_21340313_21341751
ONT_simulated_read_2031182	chr19	-	1581	7	ISM	ENSMUSG00000024855.11	ENSMUST00000025786.9	4869	24	131453	916	131453	-916	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCAGGGCAGCAGAAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	5191694	5184101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5185054_5185147_5185268_5186720_5186948_5188957_5189094_5189307_5189351_5191187_5191231_5191634
ONT_simulated_read_203185	chr4	-	712	2	ISM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	3762	1015	3762	-1015	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTCCAGAGTGCTGATTT	NA	NA	NA	NA	NA	NA	NA	NA	116561841	116560490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_116561065_116561703
ONT_simulated_read_2036061	chr6	-	1121	9	ISM	ENSMUSG00000029782.21	ENSMUST00000115157.8	2273	15	3771	6956	3768	-6570	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTATTTATCAGAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	30505946	30489369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731
ONT_simulated_read_203635	chr5	+	1721	15	FSM	ENSMUSG00000029227.16	ENST00000306932.10	1865	15	136	8	136	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAAAGCTTTGTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	74696344	74756806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_74696423_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ONT_simulated_read_2037212	chr19	-	1319	11	NIC	ENSMUSG00000025008.16	novel	2743	14	NA	NA	383	-156	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAACTCACAGACCAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	40599833	40585776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_40585987_40591248_40591387_40593749_40593904_40594146_40594242_40594669_40594778_40595721_40595848_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737
ONT_simulated_read_2037301	chr17	+	2542	16	ISM	ENSMUSG00000038545.14	ENSMUST00000043464.14	5530	26	2556	4269	2556	-4269	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCGTACCCCGCTATTGC	NA	NA	NA	NA	NA	NA	NA	NA	46963818	46971021	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_46964125_46964675_46964815_46964911_46965109_46965359_46965586_46966440_46966679_46966769_46966876_46967919_46968148_46968369_46968461_46968557_46968730_46968853_46968960_46969247_46969344_46969533_46969710_46969987_46970122_46970392_46970576_46970788_46970896_46970984
ONT_simulated_read_2039556	chr19	-	1751	1	ISM	ENSMUSG00000024654.9	ENSMUST00000049948.6	4195	7	22473	1545	22473	-1545	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTGCTTGCTAGCGCTG	NA	NA	NA	NA	NA	NA	NA	NA	9090527	9088776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_9088800_9090500
ONT_simulated_read_2040554	chr19	-	621	6	ISM	ENSMUSG00000024659.16	ENSMUST00000235280.2	1622	14	10991	128	10991	-128	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGAGAAATACTTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	20357046	20350919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_20351135_20352588_20352712_20354015_20354075_20354970_20355067_20355759_20355854_20357012
ONT_simulated_read_2046370	chr3	+	1354	3	ISM	ENSMUSG00000027955.17	ENST00000296530.12	2280	5	1202	4958	126	-4958	internal_fragment	FALSE	canonical	NA	NA	NA	NA	868	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGACTGCGGTCGAAC	NA	NA	NA	NA	NA	NA	NA	NA	79793362	79843965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_79794438_79815895_79816111_79843901
ONT_simulated_read_2047329	chr9	-	2368	1	ISM	ENSMUSG00000074305.10	ENSMUST00000188142.7	7524	4	36467	4105	36467	-102	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGAGTTGTTCCCCGTGG	NA	NA	NA	NA	NA	NA	NA	NA	56114882	56112514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_56112500_56114900
ONT_simulated_read_2047832	chr6	+	689	6	ISM	ENSMUSG00000055912.9	ENSMUST00000069695.9	1546	8	682	1010	682	-1010	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGTATCCTTTTGGGATA	NA	NA	NA	NA	NA	NA	NA	NA	72333111	72335735	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_72333296_72333704_72333753_72334032_72334120_72334931_72335000_72335290_72335419_72335561
ONT_simulated_read_2048191	chr4	+	1535	17	ISM	ENSMUSG00000028576.13	ENSMUST00000030311.11	2139	20	0	7582	0	-7582	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAAATGGAACTTCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	94502727	94573884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823_94550904_94566501_94566556_94567416_94567515_94568170_94568298_94573858
ONT_simulated_read_2048202	chrX	+	2468	16	FSM	ENSMUSG00000031065.15	ENST00000457458.6	3116	16	27	621	27	-621	multi-exon	FALSE	canonical	NA	NA	NA	NA	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCCCTCCTACAGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	20554237	20565493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_20554601_20559562_20559771_20560276_20560411_20560509_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562001_20562256_20562381_20562585_20562707_20562786_20562885_20562969_20563076_20563160_20563204_20563358_20563450_20564689_20564768_20564847
ONT_simulated_read_2048514	chr9	-	861	7	ISM	ENSMUSG00000031990.16	ENSMUST00000034472.16	1942	9	49801	884	49801	-884	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTTTGTTTTGGCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	27016888	27009563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802
ONT_simulated_read_2048702	chr7	-	536	4	ISM	ENSMUSG00000030695.17	ENST00000569798.5	1270	7	13	1244	13	-1244	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGATTGGACTACTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	126396923	126395766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126395928_126396025_126396081_126396508_126396721_126396815
ONT_simulated_read_205051	chr7	+	1966	15	ISM	ENSMUSG00000041187.17	ENST00000433867.5	3156	19	2881	4325	2736	-4325	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGCTCGCTGGACATGTGG	NA	NA	NA	NA	NA	NA	NA	NA	16579725	16599726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_16579883_16581525_16581658_16582649_16582805_16582905_16583132_16583949_16584028_16584118_16584273_16587179_16587298_16587875_16587954_16589619_16589879_16590184_16590238_16590750_16590824_16591675_16591783_16592303_16592466_16597865_16597965_16599611
ONT_simulated_read_2050854	chr16	-	300	1	NIC	ENSMUSG00000046962.17	novel	6010	3	NA	NA	9495	-3035	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGGGCAGCCTTGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	97754298	97753998	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_97754000_97754300
ONT_simulated_read_2054328	chr4	+	784	7	ISM	ENSMUSG00000012126.17	ENST00000314675.11	1132	10	20864	0	20864	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	802	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTCGAACCCCATCTCC	NA	NA	NA	NA	NA	NA	NA	NA	133850779	133854027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
ONT_simulated_read_2055889	chr12	-	985	1	ISM	ENSMUSG00000056770.16	ENSMUST00000071095.14	2755	13	71664	235	71566	-235	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATTTGTTTACTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	108073909	108072924	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_108072900_108073900
ONT_simulated_read_2056508	chr6	+	615	6	ISM	ENSMUSG00000030204.11	ENSMUST00000032326.11	1764	12	23	7148	23	-7148	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCTGCCACCATGACCA	NA	NA	NA	NA	NA	NA	NA	NA	134988597	134993591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134992904_134993544
ONT_simulated_read_2057963	chr9	+	717	5	ISM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	0	3828	0	-3828	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCGGGACCTGAGAATGGA	NA	NA	NA	NA	NA	NA	NA	NA	35122450	35124482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425
ONT_simulated_read_2058283	chr15	-	1481	7	ISM	ENSMUSG00000001288.16	ENSMUST00000063339.14	2718	8	4516	796	4516	-796	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGCAAGAGGAAGCCCCGC	NA	NA	NA	NA	NA	NA	NA	NA	102150419	102144170	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_102144659_102147239_102147399_102147824_102148030_102148292_102148470_102148562_102148724_102149492_102149635_102150270
ONT_simulated_read_2059646	chr17	+	321	4	ISM	ENSMUSG00000041119.13	ENSMUST00000237363.2	1660	16	36745	2925	36745	-2922	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCCATTCTCCTCCAA	NA	NA	NA	NA	NA	NA	NA	NA	31688853	31692208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_31688873_31689654_31689784_31690732_31690829_31692131
ONT_simulated_read_2060480	chr3	+	766	5	ISM	ENSMUSG00000033386.11	ENSMUST00000195905.5	6823	15	0	22909	0	-18210	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTCACGACCAGTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	116671875	116678917	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755
ONT_simulated_read_2060837	chr14	-	1537	10	ISM	ENSMUSG00000037544.15	ENSMUST00000043296.10	2964	19	12507	0	12277	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTCTTCGCATTGTTA	NA	NA	NA	NA	NA	NA	NA	NA	47643357	47625235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231
ONT_simulated_read_2062642	chr9	-	1103	11	ISM	ENSMUSG00000032422.19	ENST00000682491.1	2690	26	28545	2726	28545	-2726	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGGGAAGCAGGAATTTCT	NA	NA	NA	NA	NA	NA	NA	NA	88276527	88261559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419
ONT_simulated_read_2062939	chr19	-	869	8	ISM	ENSMUSG00000024982.11	ENSMUST00000076891.7	2263	11	4257	468	2902	-464	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCCACTGTTAAAGTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	55300205	55287219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056
ONT_simulated_read_2064013	chr15	-	859	5	ISM	ENSMUSG00000038736.11	ENSMUST00000038719.8	2600	10	7436	23995	7002	-23995	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTGATCACGAAGGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	44284267	44263461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_44263621_44264677_44264861_44268744_44268926_44269205_44269389_44284114
ONT_simulated_read_2066348	chr7	+	1934	9	NIC	ENSMUSG00000030852.19	novel	3627	17	NA	NA	12049	-10183	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACCCCCAGGCCTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	130330479	130352996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_+_130331559_130333260_130333297_130335247_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130345273_130345415_130352919
ONT_simulated_read_2066770	chr11	-	1562	7	ISM	ENSMUSG00000020883.19	ENST00000394294.7	2333	14	51109	0	51109	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	241	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCAGGGGACCCTGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	97989298	97979522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97980525_97981483_97981697_97982970_97983028_97983938_97983984_97985958_97986020_97987754_97987886_97989245
ONT_simulated_read_2069752	chr10	-	490	3	ISM	ENSMUSG00000039531.9	ENST00000368576.8	1689	8	19505	45	19505	-45	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATAGTAGCAGTAGAGGGT	NA	NA	NA	NA	NA	NA	NA	NA	33805977	33803440	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_33803618_33804007_33804160_33805816
ONT_simulated_read_2069761	chr5	+	609	1	ISM	ENSMUSG00000029265.5	ENSMUST00000031190.5	3085	3	0	11021	0	-9653	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGCCTGTTGAGAAATCT	NA	NA	NA	NA	NA	NA	NA	NA	108416762	108417371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_108416800_108417400
ONT_simulated_read_2071387	chr18	+	854	5	ISM	ENSMUSG00000026322.10	ENSMUST00000237114.2	1389	7	0	26959	0	-26959	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCCCCCTTCTTTGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	62474081	62570759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_62474149_62545242_62545369_62546600_62546802_62561093_62561248_62570453
ONT_simulated_read_2073356	chr2	+	534	5	ISM	ENSMUSG00000049044.17	ENSMUST00000102698.10	2982	30	0	119045	0	-119045	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTGTCTGAAGATTTG	NA	NA	NA	NA	NA	NA	NA	NA	71811630	71967675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_71811696_71861376_71861520_71864374_71864464_71875445_71875593_71967585
ONT_simulated_read_2075831	chr8	+	154	1	NIC	ENSMUSG00000031787.9	novel	3777	20	NA	NA	1410	-17462	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGCCAACTTGATTGTC	NA	NA	NA	NA	NA	NA	NA	NA	95809223	95809377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_+_95809200_95809400
ONT_simulated_read_2080205	chr11	+	351	5	ISM	ENSMUSG00000020381.11	ENSMUST00000020647.10	1142	7	58	3091	58	-3091	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCTCTTAAGACACAGCT	NA	NA	NA	NA	NA	NA	NA	NA	50065733	50087851	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_50065779_50067653_50067714_50073318_50073408_50085034_50085111_50087770
ONT_simulated_read_2081737	chr7	+	1979	1	FSM	ENSMUSG00000108942.2	ENSMUST00000207134.2	2465	1	0	486	0	-486	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAAGGGGTGGCCAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	19631258	19633237	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_19631300_19633200
ONT_simulated_read_2082536	chr6	-	660	1	FSM	ENSMUSG00000100164.2	ENSMUST00000185414.2	1042	1	0	382	0	-382	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCGGGAGATCCAGTACAC	NA	NA	NA	NA	NA	NA	NA	NA	86826422	86825762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_86825800_86826400
ONT_simulated_read_2084087	chr13	-	876	1	NIC	ENSMUSG00000078994.10	novel	524	5	NA	NA	8697	-862	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCTTAAAAGACATCAACCA	NA	NA	NA	NA	NA	NA	NA	NA	67539165	67538289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_67538300_67539200
ONT_simulated_read_2084348	chr9	-	1352	1	NIC	ENSMUSG00000032418.16	novel	2388	15	NA	NA	104413	-107	mono-exon	FALSE	NA	NA	NA	NA	NA	204	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAACGGTTTCTTCAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	86464917	86463565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_86463600_86464900
ONT_simulated_read_20857	chr9	-	1179	3	ISM	ENSMUSG00000032085.6	ENSMUST00000034590.4	1595	5	4580	0	4580	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATATTAACAATTAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	45842776	45840916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_45841814_45842130_45842234_45842597
ONT_simulated_read_2085882	chr11	-	1580	2	ISM	ENSMUSG00000004394.13	ENSMUST00000004508.13	2003	5	982	0	982	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTCTCCCTTTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	6223888	6220368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_6221801_6223740
ONT_simulated_read_208807	chr16	-	2712	9	ISM	ENSMUSG00000033149.18	ENST00000495180.1	3788	15	30027	13	30027	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGTGGAAACACTTTC	NA	NA	NA	NA	NA	NA	NA	NA	45600702	45566605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_45568295_45569089_45569176_45571708_45571929_45577461_45577609_45578479_45578571_45583272_45583478_45591034_45591135_45598075_45598166_45600618
ONT_simulated_read_2089522	chrY	+	652	5	ISM	ENSMUSG00000095134.3	ENSMUST00000167967.4	1248	7	0	2910	0	-2910	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCCGTAGCAGTGAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	90764325	90771844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrY_+_90764434_90768569_90768719_90769810_90769939_90770790_90770935_90771721
ONT_simulated_read_2091089	chr2	+	551	1	FSM	ENSMUSG00000042814.9	ENSMUST00000062148.9	912	1	0	361	0	-361	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGTGGTGCAAATATCAT	NA	NA	NA	NA	NA	NA	NA	NA	152528954	152529505	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_152529000_152529500
ONT_simulated_read_2091093	chr6	-	350	3	ISM	ENSMUSG00000029553.11	ENST00000393485.5	1730	4	1244	1248	1244	-1248	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTATTAACAACTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	16844233	16835114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_16835349_16840467_16840544_16844193
ONT_simulated_read_2091889	chr12	+	1168	1	ISM	ENSMUSG00000021023.15	ENSMUST00000021411.15	3122	7	113	78579	113	-78503	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTCTGGTTTTCGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	55349534	55350702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_55349500_55350700
ONT_simulated_read_2091905	chr6	-	878	5	ISM	ENSMUSG00000029790.17	ENST00000675962.1	1161	9	32712	-3	32679	3	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATACTTTCTTTTAAATAAG	NA	NA	NA	NA	NA	NA	NA	NA	30660996	30655434	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_30655850_30657296_30657412_30658355_30658424_30658771_30658924_30660868
ONT_simulated_read_2092044	chr13	+	963	11	ISM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	12821	17922	12821	-17922	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTCCTCCGGTGCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	59745929	59765814	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733
ONT_simulated_read_2094218	chr9	-	663	1	ISM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	34946	2727	34876	-2727	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACATAGTAAATGGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	36644029	36643366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_36643400_36644000
ONT_simulated_read_209441	chr8	+	480	3	ISM	ENSMUSG00000019428.17	ENST00000608443.6	1530	9	6362	26	6271	-26	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	338	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACCCTGTTCTTCTAGAC	NA	NA	NA	NA	NA	NA	NA	NA	70986766	70987786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70986845_70987132_70987265_70987516
ONT_simulated_read_2098262	chr7	+	2860	17	ISM	ENSMUSG00000030447.16	ENSMUST00000163845.4	4178	32	54490	-392	54490	365	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTCCATGAAGGACATGA	NA	NA	NA	NA	NA	NA	NA	NA	55546492	55580611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_55546564_55547985_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
ONT_simulated_read_2099510	chr2	-	479	3	ISM	ENSMUSG00000026987.17	ENST00000343439.9	2355	14	5126	34067	5126	-34067	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGATCAAAGCGTGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	59809048	59799639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_59799763_59807702_59807897_59808886
ONT_simulated_read_2100116	chr10	-	1278	1	NIC	ENSMUSG00000004939.8	novel	1854	7	NA	NA	2604	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGCTTCTTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	81035281	81034003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_81034000_81035300
ONT_simulated_read_2101988	chr15	+	851	9	ISM	ENSMUSG00000008690.16	ENSMUST00000074552.12	3299	20	14142	1302	14142	-1302	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACTCCAGTGCTGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	89254080	89255727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ONT_simulated_read_2103141	chr14	+	460	4	ISM	ENSMUSG00000022210.8	ENST00000397071.5	681	5	1213	0	1208	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCGAAGTGTGGTCAGAT	NA	NA	NA	NA	NA	NA	NA	NA	55717615	55727532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_55717661_55723573_55723676_55725616_55725673_55727275
ONT_simulated_read_2106439	chr12	-	826	4	ISM	ENSMUSG00000041846.16	ENSMUST00000163095.9	4083	15	24785	13628	24721	-13500	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTCATACTTGGTTGAATA	NA	NA	NA	NA	NA	NA	NA	NA	101025171	101019801	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_101019844_101021788_101021906_101022008_101022087_101024582
ONT_simulated_read_2108083	chr3	-	730	4	ISM	ENSMUSG00000068739.14	ENST00000369923.4	1860	12	16807	25	16807	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGCTTCCCCAGTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	108335647	108333927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_108334298_108334575_108334706_108335176_108335249_108335489
ONT_simulated_read_2109190	chr7	+	673	6	ISM	ENSMUSG00000030983.5	ENSMUST00000033282.5	1244	7	69	1930	69	-1930	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGACAGCCTTCAGCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	133311130	133320944	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_133311258_133315916_133315992_133316627_133316709_133318589_133318680_133319327_133319516_133320832
ONT_simulated_read_2109744	chr6	-	518	2	ISM	ENSMUSG00000029840.9	ENSMUST00000031866.9	3960	4	17905	2978	17905	-2978	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGAAGGTCTGACTATAC	NA	NA	NA	NA	NA	NA	NA	NA	35498918	35488818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_35489253_35498834
ONT_simulated_read_2111323	chr2	-	870	1	ISM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	7145	0	3562	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1032	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCAGCTCTTCCCAT	NA	NA	NA	NA	NA	NA	NA	NA	174307729	174306859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_174306900_174307700
ONT_simulated_read_2112255	chr4	-	634	4	ISM	ENSMUSG00000028684.15	ENST00000636836.1	1076	8	962	-2	962	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTAGCATGTTCTTTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	116849923	116847413	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_116847646_116848589_116848691_116848817_116848956_116849760
ONT_simulated_read_211263	chr7	-	1215	1	Genic_Genomic	ENSMUSG00000003269.18	novel	NA	NA	NA	NA	6030	3	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCTAGGAACGCACTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	45457272	45456057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr7_-_45456100_45457300
ONT_simulated_read_2115512	chr4	+	2122	10	ISM	ENSMUSG00000028423.16	ENSMUST00000098143.11	4594	24	38301	0	38301	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTATTTTGTTTATTGAG	NA	NA	NA	NA	NA	NA	NA	NA	41009206	41025993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_41009270_41015202_41015434_41016076_41016151_41017971_41018074_41018447_41018490_41021748_41021848_41022259_41022327_41023613_41023760_41024473_41024579_41024800
ONT_simulated_read_2117265	chr6	+	4503	5	ISM	ENSMUSG00000030096.9	ENSMUST00000032185.9	6186	15	64303	140	64303	-140	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTCGGTTTTTTTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	91725336	91735907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894
ONT_simulated_read_2120001	chr1	-	808	4	NIC	ENSMUSG00000054387.14	novel	1914	11	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGAGTCAGTCACAGAG	NA	NA	NA	NA	NA	NA	NA	NA	132946596	132919396	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_132919964_132922240_132922322_132940374_132940453_132946514
ONT_simulated_read_212195	chr2	+	2048	1	ISM	ENSMUSG00000041911.4	ENSMUST00000037119.4	4111	3	0	3820	0	-3820	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACAGTTCGGCCTCATCCT	NA	NA	NA	NA	NA	NA	NA	NA	71358456	71360504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_71358500_71360500
ONT_simulated_read_2123517	chr7	-	944	6	ISM	ENSMUSG00000002602.17	ENSMUST00000085948.11	3899	19	24191	1062	24173	-1062	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACCTCCAGGGCAGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	25463939	25458116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_25458439_25460175_25460313_25460829_25460990_25462708_25462819_25463367_25463490_25463846
ONT_simulated_read_2123630	chr7	-	115	2	ISM	ENSMUSG00000030701.18	ENST00000543085.5	470	5	11142	135	11142	-135	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGTGATAGTTCGAGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	100294877	100294262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_100294277_100294776
ONT_simulated_read_2123751	chr3	-	1680	11	ISM	ENSMUSG00000027809.15	ENST00000307738.5	1820	12	5690	0	5690	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACTAGGCCTTCATTCAC	NA	NA	NA	NA	NA	NA	NA	NA	79530275	79511308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_79511473_79512211_79512434_79512936_79513120_79517105_79517275_79519218_79519363_79520928_79521070_79522306_79522454_79523230_79523309_79525613_79525733_79526145_79526228_79530044
ONT_simulated_read_2125682	chr17	-	340	3	ISM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	11933	2037	11933	-2037	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTCCTTCTATTGAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	25167730	25163480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_25163653_25164553_25164603_25167611
ONT_simulated_read_2125757	chr15	-	453	1	FSM	ENSMUSG00000101167.2	ENSMUST00000151919.2	1112	1	0	659	0	-659	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCCAGGGACGTCGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	62091181	62090728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_62090700_62091200
ONT_simulated_read_2126876	chr16	-	954	2	ISM	ENSMUSG00000022664.12	ENSMUST00000181177.2	865	4	14208	51	13825	-51	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAGCCACAGGGTGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	44964721	44962359	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_44962576_44963983
ONT_simulated_read_2128696	chr7	-	314	2	ISM	ENSMUSG00000025586.18	ENST00000616959.4	1772	10	22347	138	22347	91	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	549	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTCTGCACTAATTAATG	NA	NA	NA	NA	NA	NA	NA	NA	80999602	80997936	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80998188_80999539
ONT_simulated_read_2128971	chr7	+	1484	9	ISM	ENSMUSG00000030555.17	ENSMUST00000107471.8	2216	11	29	15144	29	-49	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTACCGGGCCCTGGGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	67297201	67361180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_67297594_67312074_67312275_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101
ONT_simulated_read_2130560	chr14	-	632	1	ISM	ENSMUSG00000033405.5	ENSMUST00000043813.3	3579	5	26603	2131	26603	-2131	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCTCCCTTTCACAGCC	NA	NA	NA	NA	NA	NA	NA	NA	73759079	73758447	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_73758400_73759100
ONT_simulated_read_2131454	chr12	-	994	3	ISM	ENSMUSG00000059436.14	ENSMUST00000110395.11	1942	5	8909	725	8749	197	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGCACCCATGGCACAGT	NA	NA	NA	NA	NA	NA	NA	NA	77000050	76984767	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_76985530_76986740_76986865_76999942
ONT_simulated_read_2132400	chr10	-	1468	7	ISM	ENSMUSG00000020166.16	ENSMUST00000164088.8	2618	14	50705	290	50705	54	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTACCTCATTTTTAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	116334363	116321359	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242
ONT_simulated_read_2133079	chr13	-	392	4	ISM	ENSMUSG00000016018.5	ENSMUST00000022281.5	3689	27	52746	511	52746	-511	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCACCTGTCTGATTGCAA	NA	NA	NA	NA	NA	NA	NA	NA	113011186	113004462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_113004530_113005544_113005650_113009432_113009596_113011129
ONT_simulated_read_2134093	chr7	+	1344	7	ISM	ENSMUSG00000047248.21	ENSMUST00000098259.11	6602	32	48	73612	24	0	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	364	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTTTCTAGCTTGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	100021487	100045056	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_100021704_100023470_100023741_100029174_100029333_100039285_100039510_100040139_100040388_100044374_100044508_100044961
ONT_simulated_read_2134105	chr2	-	1281	9	ISM	ENSMUSG00000034848.18	ENSMUST00000125446.3	4061	28	25197	25413	25197	-25413	internal_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACTATGAGAAAGCAATTA	NA	NA	NA	NA	NA	NA	NA	NA	66061739	66040399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_66040525_66047528_66047636_66052997_66053137_66053858_66053970_66054419_66054493_66056249_66056489_66057074_66057297_66059325_66059484_66061632
ONT_simulated_read_2138100	chr8	-	696	4	ISM	ENSMUSG00000031508.15	ENSMUST00000033905.13	2285	6	7223	1093	7080	-1093	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCAGCAGGCCGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	11678531	11662676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_11662948_11665814_11665911_11669061_11669298_11678438
ONT_simulated_read_2140377	chr13	-	2052	1	ISM	ENSMUSG00000034928.17	ENSMUST00000177950.8	3941	11	6006	352	5984	-337	mono-exon	FALSE	NA	NA	NA	NA	NA	178	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGTGATTTGGGGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	54829615	54827563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_54827600_54829600
ONT_simulated_read_2141724	chr2	-	1565	1	ISM	ENSMUSG00000026797.17	ENSMUST00000050000.16	3892	19	57636	443	57593	-84	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAGTATGGAAGCACAA	NA	NA	NA	NA	NA	NA	NA	NA	32679621	32678056	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_32678100_32679600
ONT_simulated_read_2146492	chr17	-	1005	7	ISM	ENSMUSG00000004865.17	ENSMUST00000130643.9	4653	16	21823	3551	21565	-3551	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCAATCTGTCTGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	28819860	28810172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842
ONT_simulated_read_2147115	chr12	+	292	1	ISM	ENSMUSG00000085793.3	ENSMUST00000137170.3	2270	6	78622	1238	78622	-1238	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGTCCAGACAAGAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	84576817	84577109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_84576800_84577100
ONT_simulated_read_2147197	chr16	-	857	2	ISM	ENSMUSG00000005983.16	ENSMUST00000177323.8	915	3	508	0	508	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCTTGTTTGTTTGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	3725058	3723661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_3724165_3724704
ONT_simulated_read_2147631	chr9	+	470	4	ISM	ENSMUSG00000032604.17	ENSMUST00000134939.9	2374	23	6005	1068	6005	-1068	internal_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGTGAACATAGCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	108391263	108392072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108391408_108391488_108391594_108391741_108391835_108391944
ONT_simulated_read_2147929	chr2	-	431	5	ISM	ENSMUSG00000032841.16	ENST00000527487.1	695	7	13751	3	13751	-3	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	231	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCCTCTAACAGAACAGGA	NA	NA	NA	NA	NA	NA	NA	NA	101588899	101547716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_101547812_101564949_101565091_101571631_101571724_101577070_101577129_101588854
ONT_simulated_read_2149205	chr4	-	616	6	ISM	ENSMUSG00000028409.12	ENSMUST00000030117.5	2418	12	3301	7593	3301	-7593	internal_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTGAGAAGATTTGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	40754622	40744134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507
ONT_simulated_read_2150647	chr17	-	395	2	ISM	ENSMUSG00000033475.16	ENSMUST00000113301.2	594	3	809	0	809	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATTTTATTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	47998184	47997664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_47997988_47998112
ONT_simulated_read_2152453	chr3	+	1028	4	ISM	ENSMUSG00000028086.16	ENST00000603548.6	5217	13	842	20891	210	-19068	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCGGCGGAGGATTACA	NA	NA	NA	NA	NA	NA	NA	NA	84722784	84865884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_84723077_84810807_84811387_84862181_84862265_84865810
ONT_simulated_read_2153766	chr6	-	499	7	ISM	ENSMUSG00000030304.12	ENSMUST00000136008.8	4174	14	9831	10421	9831	-10421	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCTGTAGATCGTAAGT	NA	NA	NA	NA	NA	NA	NA	NA	148104041	148090997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993
ONT_simulated_read_2158193	chr18	-	901	11	ISM	ENSMUSG00000053644.14	ENSMUST00000066208.13	1914	18	15372	1536	15294	-1536	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTAAGGAAGGGCTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	56680009	56661351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975
ONT_simulated_read_2160921	chr8	+	349	3	FSM	ENSMUSG00000100706.7	ENST00000315302.6	487	3	0	138	0	-138	multi-exon	FALSE	canonical	NA	NA	NA	NA	274	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGCGGCCCGCCCTTGACG	NA	NA	NA	NA	NA	NA	NA	NA	49296831	49297549	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_49296927_49297137_49297282_49297439
ONT_simulated_read_2161129	chr8	+	867	6	ISM	ENSMUSG00000031820.10	ENSMUST00000002473.10	1433	9	2665	0	2665	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGTATGGCTTCAGGC	NA	NA	NA	NA	NA	NA	NA	NA	71852169	71857263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_71852291_71852372_71852452_71854323_71854349_71855389_71855520_71855619_71855707_71856838
ONT_simulated_read_2161136	chr9	-	846	1	ISM	ENSMUSG00000032579.15	ENSMUST00000035196.14	2192	11	10421	0	10403	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGACTGCCTCTTTTCACG	NA	NA	NA	NA	NA	NA	NA	NA	107205128	107204282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_107204300_107205100
ONT_simulated_read_216171	chr15	+	1480	10	NIC	ENSMUSG00000056851.15	novel	1086	14	NA	NA	913	263	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTGGTGCATTTATGGA	NA	NA	NA	NA	NA	NA	NA	NA	102382681	102407579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_+_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102398189_102398243_102399068_102399239_102406923
ONT_simulated_read_2162388	chr7	-	1015	3	ISM	ENSMUSG00000003436.12	ENSMUST00000108315.4	2618	9	3502	797	2834	0	internal_fragment	FALSE	canonical	NA	NA	NA	NA	274	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAGGTGAGGGCGACACA	NA	NA	NA	NA	NA	NA	NA	NA	27998161	27993774	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_27994349_27995712_27995936_27997943
ONT_simulated_read_2163536	chr2	-	1938	5	NIC	ENSMUSG00000026779.7	novel	5590	12	NA	NA	18845	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAAACACTACCACTCTAA	NA	NA	NA	NA	NA	NA	NA	NA	23027039	23008171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_23008605_23010468_23010571_23021691_23021831_23022636_23023744_23026882
ONT_simulated_read_2165987	chr11	-	677	3	FSM	ENSMUSG00000020810.6	ENST00000589342.1	754	3	78	-1	78	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	1486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCGTGAGTCACTTCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	116544706	116537477	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_116537819_116540609_116540842_116544602
ONT_simulated_read_217210	chr16	-	236	3	ISM	ENSMUSG00000003528.16	ENSMUST00000003622.16	1666	9	949	1283	949	-1283	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACTGAAGCAGGGCTCAA	NA	NA	NA	NA	NA	NA	NA	NA	17745134	17744369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17744404_17744519_17744605_17745017
ONT_simulated_read_2172952	chr1	+	558	4	ISM	ENSMUSG00000026520.9	ENST00000612039.4	743	6	1457	0	1457	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGAGGACTCTGTAGGG	NA	NA	NA	NA	NA	NA	NA	NA	180733479	180735203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_180733619_180734159_180734253_180734354_180734519_180735041
ONT_simulated_read_2176459	chr1	-	284	1	ISM	ENSMUSG00000004451.15	ENSMUST00000004565.15	2289	5	32997	1209	32997	-1209	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGAGCTTTGAGAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	119399527	119399243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_119399200_119399500
ONT_simulated_read_2176580	chr5	-	751	5	ISM	ENSMUSG00000029730.17	ENSMUST00000148879.8	1351	9	-218	4609	-218	-4601	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAATTGTTAACTGTGCG	NA	NA	NA	NA	NA	NA	NA	NA	138170298	138167470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
ONT_simulated_read_2178278	chr12	+	247	1	ISM	ENSMUSG00000021226.8	ENSMUST00000021649.8	2196	3	0	5766	0	-5766	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGCAGCCCGTCACGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	84034634	84034881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_84034600_84034900
ONT_simulated_read_2181386	chr19	-	1046	9	ISM	ENSMUSG00000035179.5	ENST00000432063.6	1180	10	546	0	546	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	383	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCATGCCCCCTTGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	10459185	10452294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_10452466_10454391_10454487_10454568_10454683_10454888_10454976_10455560_10455674_10455988_10456053_10456833_10456963_10458647_10458802_10459066
ONT_simulated_read_2183022	chr6	+	1002	4	ISM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	0	7304	0	-7060	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	794	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGCTACATCATTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	85428495	85438153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026
ONT_simulated_read_2184052	chr4	-	998	1	ISM	ENSMUSG00000028530.15	ENSMUST00000102781.10	4906	25	111701	217	111701	-217	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCATTAATGCTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	101010778	101009780	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_101009800_101010800
ONT_simulated_read_2188771	chr6	-	1010	10	ISM	ENSMUSG00000003476.17	ENSMUST00000213026.2	1443	12	13104	62	13104	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	107	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCACCGTCTGCCCGGC	NA	NA	NA	NA	NA	NA	NA	NA	55081794	55068259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_55068404_55069497_55069540_55069936_55070073_55070263_55070350_55076196_55076270_55077047_55077109_55077606_55077761_55079735_55079854_55080152_55080263_55081708
ONT_simulated_read_2188984	chr18	+	1429	10	ISM	ENSMUSG00000024404.8	ENST00000581585.5	1874	13	8157	28	8130	-11	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATAATATAATTCTTTAAC	NA	NA	NA	NA	NA	NA	NA	NA	12269968	12288562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
ONT_simulated_read_2189449	chr9	-	3294	1	ISM	ENSMUSG00000052698.16	ENSMUST00000040025.14	12132	58	338199	1124	106160	-1124	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTCCAGAAAACCCTCTAAG	NA	NA	NA	NA	NA	NA	NA	NA	67128786	67125492	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_67125500_67128800
ONT_simulated_read_2189885	chr5	+	737	2	ISM	ENSMUSG00000038181.17	ENSMUST00000088295.9	5371	5	6006	648	5997	-648	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTCTGGTCTGATGGGT	NA	NA	NA	NA	NA	NA	NA	NA	24797744	24798745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_24798352_24798615
ONT_simulated_read_2203679	chr2	-	632	7	ISM	ENSMUSG00000041777.13	ENSMUST00000058615.10	2821	10	66	20634	66	-20634	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGGCATTAGACAAAAGTTA	NA	NA	NA	NA	NA	NA	NA	NA	73142979	73134082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_73134202_73136233_73136283_73136620_73136686_73136771_73136783_73137198_73137273_73140800_73140896_73142760
ONT_simulated_read_2204768	chr17	-	1807	14	ISM	ENSMUSG00000040688.17	ENSMUST00000126319.8	5226	22	2965	2582	1475	179	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGTGAAGTCATTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	24923669	24919504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24919760_24919849_24920009_24920093_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605
ONT_simulated_read_2205257	chr2	+	936	8	ISM	ENSMUSG00000027455.17	ENSMUST00000028949.16	1364	9	18	1643	7	-1643	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCCACAGGTACCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	151336230	151351582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428
ONT_simulated_read_2205339	chr5	-	1969	12	ISM	ENSMUSG00000029657.16	ENSMUST00000074846.14	3240	17	5736	610	5698	-286	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCCTGTATAACAGACTG	NA	NA	NA	NA	NA	NA	NA	NA	149553938	149540919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803
ONT_simulated_read_2206147	chr6	-	428	3	ISM	ENSMUSG00000040250.15	ENST00000261191.12	2479	17	24845	179	24845	-179	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTATCTTTTTTGTACT	NA	NA	NA	NA	NA	NA	NA	NA	146453989	146451311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_146451484_146452136_146452273_146453869
ONT_simulated_read_2211579	chr19	-	603	6	ISM	ENSMUSG00000063904.5	ENST00000530165.5	1985	16	11437	4020	11437	-4020	internal_fragment	TRUE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGCGCCCTGATGCCCGG	NA	NA	NA	NA	NA	NA	NA	NA	4966838	4963892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725
ONT_simulated_read_2212235	chr7	+	204	1	ISM	ENSMUSG00000037049.10	ENSMUST00000046983.10	2412	6	0	3826	0	-3826	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTCAGAGCCGGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	105203566	105203770	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105203600_105203800
ONT_simulated_read_2217092	chr10	-	202	2	ISM	ENSMUSG00000004934.15	ENSMUST00000005064.14	2571	11	12016	2359	12016	-2359	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTGCAGCCTATGACCAG	NA	NA	NA	NA	NA	NA	NA	NA	80991741	80991458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80991586_80991666
ONT_simulated_read_2217788	chr12	-	1355	1	ISM	ENSMUSG00000020659.17	ENSMUST00000064240.14	3937	6	12547	825	12547	-718	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTTCACATGTAGCAT	NA	NA	NA	NA	NA	NA	NA	NA	31537007	31535652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_31535700_31537000
ONT_simulated_read_2218677	chr7	-	465	3	ISM	ENSMUSG00000036733.17	ENST00000592202.5	1315	8	5462	0	5462	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	391	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAACAGTTGTCCACTCGC	NA	NA	NA	NA	NA	NA	NA	NA	30344033	30340485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_30340646_30340732_30340928_30343923
ONT_simulated_read_2220210	chr12	-	1484	1	NIC	ENSMUSG00000090935.11	novel	4655	4	NA	NA	9263	-1542	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGTATTTTCCCCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	81548941	81547457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_81547500_81548900
ONT_simulated_read_222103	chr13	-	1372	1	FSM	ENSMUSG00000099096.3	ENSMUST00000184300.3	68	1	-624	-680	-624	680	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACCACTTTCATGTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	55656129	55654757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_55654800_55656100
ONT_simulated_read_2222059	chr14	+	684	8	ISM	ENSMUSG00000022204.10	ENSMUST00000022815.10	1200	11	0	2083	0	-2083	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGGAGCAGAAGCGCCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	55252910	55259511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494
ONT_simulated_read_2222581	chr3	-	836	4	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	5918	0	5918	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	868	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAAGTTTCATACTCTG	NA	NA	NA	NA	NA	NA	NA	NA	105861497	105850013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333
ONT_simulated_read_2223315	chr9	-	969	1	ISM	ENSMUSG00000032803.16	ENSMUST00000035484.11	3387	5	10544	1234	9601	-1220	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAATTGTAAAATGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	103232495	103231526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_103231500_103232500
ONT_simulated_read_2223370	chr7	+	1361	6	NIC	ENSMUSG00000035585.17	novel	1375	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTGTTCTTTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	3696763	3703886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_+_3696889_3697596_3697844_3697976_3698227_3698362_3698621_3698711_3698833_3703526
ONT_simulated_read_2223802	chr8	+	792	7	ISM	ENSMUSG00000031820.10	ENSMUST00000002473.10	1433	9	1561	104	1561	-104	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCACCGGAATAAAAATCTG	NA	NA	NA	NA	NA	NA	NA	NA	71851065	71857159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_71851095_71852169_71852291_71852372_71852452_71854323_71854349_71855389_71855520_71855619_71855707_71856838
ONT_simulated_read_222498	chrX	-	597	1	NIC	ENSMUSG00000048970.10	novel	1449	2	NA	NA	2963	-743	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTCAGTGTTCCTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	37721001	37720404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_37720400_37721000
ONT_simulated_read_2227035	chr5	-	645	1	NIC	ENSMUSG00000028958.16	novel	1333	3	NA	NA	677	-154	mono-exon	FALSE	NA	NA	NA	NA	NA	402	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCCATCTTAGTGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	24651273	24650628	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_24650600_24651300
ONT_simulated_read_2227103	chr7	-	425	2	ISM	ENSMUSG00000025102.15	ENSMUST00000026092.9	887	5	6360	63	6360	-63	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATCTAGAAGTTCTTAGG	NA	NA	NA	NA	NA	NA	NA	NA	81432866	81431992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_81432330_81432778
ONT_simulated_read_2229551	chr8	+	695	1	ISM	ENSMUSG00000031629.15	ENSMUST00000034045.15	2931	13	27136	149	27077	-149	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTACCAAAGATGTCGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	47032198	47032893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_47032200_47032900
ONT_simulated_read_2229657	chr10	-	555	1	ISM	ENSMUSG00000001665.12	ENSMUST00000001715.10	1880	5	13	6732	13	-5927	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCTCAGTTGGCAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	75617235	75616680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_75616700_75617200
ONT_simulated_read_2230200	chr12	-	1553	14	ISM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	4947	137	3024	-137	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACGCCTTTAATCCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	84659197	84649563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098
ONT_simulated_read_223024	chr17	+	377	4	ISM	ENSMUSG00000024392.18	ENST00000375976.8	3482	24	5864	4311	5864	-4303	internal_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTGGGTGAGTCCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	35360952	35361978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35361059_35361282_35361361_35361702_35361816_35361898
ONT_simulated_read_2230809	chr10	+	570	2	ISM	ENSMUSG00000003072.16	ENSMUST00000105367.8	1410	5	0	3413	0	-3412	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCCTCGCTTGCCCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	79977290	79978234	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_79977501_79977874
ONT_simulated_read_2239116	chr18	-	1947	6	ISM	ENSMUSG00000024349.11	ENSMUST00000237919.2	2134	7	916	0	899	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTGGCCTAGTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	35872616	35866733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_35867752_35868155_35868343_35868931_35869171_35871733_35871843_35872092_35872274_35872403
ONT_simulated_read_2239904	chr10	+	1254	2	ISM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	0	7450	0	-4916	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCATGCCAGATGAAGACG	NA	NA	NA	NA	NA	NA	NA	NA	11157073	11166346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_11157245_11165263
ONT_simulated_read_2240118	chr17	-	644	1	Genic_Genomic	ENSMUSG00000001229.10	novel	NA	NA	NA	NA	31451	22	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAACAAACAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	56494438	56493794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr17_-_56493800_56494400
ONT_simulated_read_2241897	chr18	+	499	5	ISM	ENSMUSG00000024603.9	ENSMUST00000223984.2	2948	14	33	13844	4	-13844	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCGCAAGAAGCTGGCACG	NA	NA	NA	NA	NA	NA	NA	NA	60659289	60677167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_60659438_60667664_60667736_60671335_60671515_60674643_60674688_60677110
ONT_simulated_read_2242467	chr8	-	645	1	ISM	ENSMUSG00000037260.9	ENSMUST00000037609.8	2694	18	31453	203	31453	-203	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGAATGGACTGTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	26435328	26434683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26434700_26435300
ONT_simulated_read_224302	chr9	-	1546	6	ISM	ENSMUSG00000032306.15	ENSMUST00000034856.15	1780	8	2036	0	45	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTCAGCCTTTGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	57458010	57451538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_57452222_57452477_57452687_57453676_57453851_57455810_57455994_57456319_57456462_57457855
ONT_simulated_read_2244418	chr15	+	863	8	ISM	ENSMUSG00000033065.15	ENSMUST00000051226.8	2879	23	0	9741	0	-9731	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACTGGGAAGAACACCTT	NA	NA	NA	NA	NA	NA	NA	NA	98006346	98020581	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_98006493_98010034_98010128_98016062_98016137_98017273_98017352_98018671_98018862_98019077_98019244_98020099_98020145_98020510
ONT_simulated_read_2245408	chr1	+	645	7	FSM	ENSMUSG00000034432.12	ENST00000409334.5	651	7	7	-1	7	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGGAGTTTTATTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	90531199	90540026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90538696_90538760_90539261_90539310_90539895
ONT_simulated_read_2246920	chr7	+	859	1	FSM	ENSMUSG00000097530.2	ENSMUST00000181818.2	1461	1	0	602	0	-602	mono-exon	FALSE	NA	NA	NA	NA	NA	979	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGGCTGCTCAACAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	72322565	72323424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_72322600_72323400
ONT_simulated_read_2251019	chr2	-	1730	16	ISM	ENSMUSG00000027620.17	ENSMUST00000146297.8	2580	17	349	694	349	-405	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	NA	NA	NA	NA	NA	NA	NA	156021151	155989859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096
ONT_simulated_read_2252587	chr17	+	1599	7	FSM	ENSMUSG00000024101.16	ENST00000538033.2	1641	7	43	-1	43	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGCTTTGGCCATTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	66422694	66426131	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_66422778_66422948_66423096_66423254_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805
ONT_simulated_read_2254354	chr18	+	496	4	ISM	ENSMUSG00000097891.2	ENSMUST00000180600.2	747	5	0	570	0	-570	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTTATTTGGAAGAATTT	NA	NA	NA	NA	NA	NA	NA	NA	43605880	43607664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_43606050_43606329_43606419_43606593_43606750_43607582
ONT_simulated_read_225628	chr2	+	1337	4	NNC	ENSMUSG00000026755.15	novel	1339	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	NA	NA	NA	NA	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGCTTCAAAAGTCATC	NA	NA	NA	NA	NA	NA	NA	NA	38898087	38905889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_+_38898357_38903128_38903200_38903734_38903912_38905069
ONT_simulated_read_2256441	chr11	-	2161	15	NIC	ENSMUSG00000009079.17	novel	2588	17	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTCCTCCTCTGTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	5049067	5019688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028580_5028919_5028953_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ONT_simulated_read_2257066	chr5	-	1455	4	ISM	ENSMUSG00000053134.14	ENST00000406540.5	2100	6	1968	-20	1968	20	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCATGAGTAGTAATTAGA	NA	NA	NA	NA	NA	NA	NA	NA	31680606	31672987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_31673271_31675610_31675849_31677426_31677752_31679997
ONT_simulated_read_2257360	chr7	+	1355	14	ISM	ENSMUSG00000002963.18	ENSMUST00000107876.8	1770	17	1357	1	1076	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCACAGCCATCTTGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	44507919	44512073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
ONT_simulated_read_2258373	chr7	-	1434	1	FSM	ENSMUSG00000062944.5	ENSMUST00000078816.5	3574	1	0	2140	0	-2140	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCGTTCACACACGGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	127837203	127835769	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_127835800_127837200
ONT_simulated_read_2261707	chr8	-	1021	1	ISM	ENSMUSG00000031823.15	ENSMUST00000034280.9	3069	8	18793	779	18793	-779	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTGGTGCCTGAGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	120809428	120808407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_120808400_120809400
ONT_simulated_read_2262931	chr15	+	2405	16	ISM	ENSMUSG00000022477.14	ENST00000677532.1	2768	18	22803	25	22803	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	NA	NA	NA	NA	NA	NA	NA	81779506	81799334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
ONT_simulated_read_2266234	chr5	-	785	1	ISM	ENSMUSG00000082361.7	ENSMUST00000121044.6	2876	6	43696	1253	43696	-1253	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGCGATTTTCCATGTTG	NA	NA	NA	NA	NA	NA	NA	NA	91507157	91506372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_91506400_91507200
ONT_simulated_read_2266936	chr13	-	1435	8	ISM	ENSMUSG00000021363.15	ENSMUST00000224740.2	2354	13	21001	185	21001	-9	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCGAGTTCCACAAGACGCA	NA	NA	NA	NA	NA	NA	NA	NA	41202934	41179802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_41180039_41183492_41183613_41188229_41188362_41193104_41193254_41195494_41195662_41199494_41199807_41201528_41201697_41202783
ONT_simulated_read_2267628	chr9	+	799	9	ISM	ENSMUSG00000041506.16	ENSMUST00000047721.10	1586	15	49	1834	49	-1834	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCACTTCCCACGACCGC	NA	NA	NA	NA	NA	NA	NA	NA	106354516	106360789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755
ONT_simulated_read_2268272	chr10	-	656	6	ISM	ENSMUSG00000020181.19	ENST00000536525.6	7346	39	97242	169387	-69882	-169387	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTCTACCATGCTGACAG	NA	NA	NA	NA	NA	NA	NA	NA	109738964	109689247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_109689396_109699612_109699753_109702791_109702861_109716395_109716580_109719474_109719548_109738922
ONT_simulated_read_2268940	chr19	+	549	4	ISM	ENSMUSG00000024900.6	ENSMUST00000025835.6	4317	19	51806	5587	51806	-5587	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGACTCACCTTTCCTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	3425090	3430146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_3425210_3426410_3426576_3428367_3428503_3430016
ONT_simulated_read_2270940	chr5	+	261	3	ISM	ENSMUSG00000029681.13	ENSMUST00000111188.5	1434	5	33	4672	33	3711	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGGGAACCTAATGGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	135197298	135206013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_135197453_135199940_135200017_135205982
ONT_simulated_read_227312	chr2	-	4114	12	ISM	ENSMUSG00000034903.19	ENSMUST00000090896.10	4867	13	87415	533	87415	-533	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGTAAAATTGCACAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	64981502	64919226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_64919902_64926031_64926209_64927976_64929737_64932412_64932511_64933503_64933739_64937355_64937431_64938101_64938262_64956236_64956462_64956551_64956650_64963922_64964152_64966688_64966891_64981322
ONT_simulated_read_2273363	chr11	-	1006	4	ISM	ENSMUSG00000025170.14	ENSMUST00000106107.3	1861	6	28634	537	28577	423	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAATTATGGATGTGACT	NA	NA	NA	NA	NA	NA	NA	NA	121250443	121247487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_121248135_121248685_121248909_121249600_121249679_121250385
ONT_simulated_read_2273616	chr19	+	1172	1	ISM	ENSMUSG00000097233.2	ENSMUST00000181211.2	3877	2	202	3345	202	-3345	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCGGTCTAGAGGTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	4219766	4220938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4219800_4220900
ONT_simulated_read_2277644	chr1	-	687	6	ISM	ENSMUSG00000042699.12	ENSMUST00000186380.7	4561	28	15311	9979	-2552	-3185	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTCCTCCAAAGGACAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	153348043	153341482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971
ONT_simulated_read_2277966	chr2	+	395	1	FSM	ENSMUSG00000081070.2	ENSMUST00000120117.2	1069	1	0	674	0	-674	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGCTGACTGGTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	3687398	3687793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_3687400_3687800
ONT_simulated_read_2278037	chr13	-	3370	18	ISM	ENSMUSG00000021301.10	ENST00000453890.5	4850	27	111879	15294	111879	-15294	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCAGGTGACTGAGAAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	14497199	14420423	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_14420461_14422143_14422274_14422928_14423028_14438649_14438803_14439697_14439812_14440542_14440664_14445543_14445654_14446591_14446676_14452862_14452960_14455000_14455107_14460132_14460268_14471854_14472041_14474910_14475033_14480560_14480704_14481367_14481519_14490601_14491946_14493458_14493560_14497062
ONT_simulated_read_2278793	chr8	+	1955	10	ISM	ENSMUSG00000005698.16	ENST00000646771.1	3730	12	46	5633	46	-5633	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGGCGTAGAGGGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	106363261	106403883	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_106363353_106370147_106370265_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846
ONT_simulated_read_2279364	chr16	+	307	4	ISM	ENSMUSG00000022816.12	ENSMUST00000114763.3	3789	11	38833	13875	38833	-13875	internal_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCATCCAGTGGCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	37636067	37643001	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_37636173_37639265_37639396_37641517_37641551_37642962
ONT_simulated_read_2281859	chr2	+	1131	6	ISM	ENSMUSG00000074749.11	ENSMUST00000099278.9	2183	14	45	79074	45	-79074	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACATGAGGAAGAGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	146697828	146732943	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_146697964_146703039_146703103_146705626_146705790_146712685_146712767_146730940_146731587_146732900
ONT_simulated_read_2282434	chr5	+	394	2	ISM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	0	29348	0	-29348	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTGTTTACTTTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	45827260	45828540	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_45827476_45828361
ONT_simulated_read_2285606	chr3	-	1425	1	FSM	ENSMUSG00000105655.2	ENSMUST00000196955.2	1754	1	0	329	0	-329	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTTTCACTGTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	104745499	104744074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_104744100_104745500
ONT_simulated_read_2286340	chr10	+	391	1	ISM	ENSMUSG00000003068.18	ENSMUST00000003152.14	2566	10	0	14489	0	-14482	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCGACGCGGCCGCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	79951636	79952027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_79951600_79952000
ONT_simulated_read_228878	chr7	+	922	9	ISM	ENSMUSG00000003423.16	ENSMUST00000085375.13	1185	10	35	345	35	-345	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCTGGTGATAGGAGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	44803772	44809143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_44803965_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104
ONT_simulated_read_2290104	chr1	-	306	1	FSM	ENSMUSG00000099997.2	ENSMUST00000187481.2	1337	1	0	1031	0	-1031	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGGCACTACACAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	24634504	24634198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_24634200_24634500
ONT_simulated_read_2291517	chr5	-	1439	8	ISM	ENSMUSG00000029545.14	ENSMUST00000031524.11	1870	10	6160	118	4544	-118	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTGTGGGACGGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	115251245	115248475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115249834_115249915_115250087_115250298_115250451_115250823_115250936_115251122
ONT_simulated_read_2293321	chr18	-	2455	1	ISM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	41873	917	41873	-917	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACATGAGTGAGACTCTG	NA	NA	NA	NA	NA	NA	NA	NA	24621388	24618933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_24618900_24621400
ONT_simulated_read_2294376	chr9	-	1437	9	ISM	ENSMUSG00000032181.8	ENST00000542355.6	1896	11	1820	48	1820	-48	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	551	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACATTTTGTAATCAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	75589438	75550873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_75551227_75558912_75558994_75568534_75568673_75570474_75570559_75572935_75573053_75576496_75576675_75582626_75582777_75583950_75584094_75589245
ONT_simulated_read_2296065	chr7	-	1532	1	NIC	ENSMUSG00000025103.9	novel	3001	8	NA	NA	35704	-122	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGTGCTTTACTGAACA	NA	NA	NA	NA	NA	NA	NA	NA	81443475	81441943	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_81441900_81443500
ONT_simulated_read_2296258	chr10	-	516	4	ISM	ENSMUSG00000004937.7	ENSMUST00000218208.2	1964	12	12501	663	12490	-663	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	289	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCTGGGCCCTCAGGTC	NA	NA	NA	NA	NA	NA	NA	NA	80883511	80880573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472
ONT_simulated_read_229815	chr3	-	561	1	ISM	ENSMUSG00000015745.10	ENSMUST00000015889.10	1931	6	6399	613	6399	-613	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGGAAGTCCGGGAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	95896914	95896353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95896400_95896900
ONT_simulated_read_2298947	chr6	+	975	7	ISM	ENSMUSG00000030007.9	ENSMUST00000204592.3	1544	11	10060	93	3038	-42	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	512	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATGAGACTATCAAGAACC	NA	NA	NA	NA	NA	NA	NA	NA	85439133	85445171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
ONT_simulated_read_2299606	chr19	-	127	2	ISM	ENSMUSG00000003680.17	ENSMUST00000189739.7	1794	9	8509	736	8509	-736	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGCTCAGGCAGCAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	8752854	8752628	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_8752655_8752753
ONT_simulated_read_23005	chr2	-	344	3	ISM	ENSMUSG00000035000.9	ENST00000678668.1	3070	23	51848	892	51848	-892	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGACATTTCAGGCTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	62165014	62162867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_62163064_62164599_62164674_62164940
ONT_simulated_read_2303850	chr12	+	2349	21	ISM	ENSMUSG00000058070.15	ENSMUST00000109860.8	4160	22	262	2187	262	-1015	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCGGGCTCACGAGAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	108389336	108503636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_108389521_108429785_108429969_108438111_108438245_108454547_108454680_108468648_108468678_108472737_108472868_108475344_108475495_108476435_108476506_108478079_108478191_108479233_108479330_108480636_108480772_108481374_108481475_108482718_108482874_108487574_108487701_108487906_108488039_108493955_108494024_108496562_108496652_108500912_108501011_108501123_108501212_108502485_108502582_108503592
ONT_simulated_read_2306138	chr8	-	633	1	Genic_Genomic	ENSMUSG00000002393.15	novel	NA	NA	NA	NA	7205	4	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCAGCCTCTGCTTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	71827399	71826766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr8_-_71826800_71827400
ONT_simulated_read_2306286	chr18	-	461	1	FSM	ENSMUSG00000117730.2	ENSMUST00000237135.2	558	1	0	97	0	-97	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCGCTGTGGGAAACTGCC	NA	NA	NA	NA	NA	NA	NA	NA	33518008	33517547	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_33517500_33518000
ONT_simulated_read_2307914	chr16	+	1761	9	ISM	ENSMUSG00000039473.9	ENSMUST00000229126.2	5589	17	13672	8708	13672	-8704	internal_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCCACCTCTCCACAGTG	NA	NA	NA	NA	NA	NA	NA	NA	4882269	4895445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_4882651_4888512_4888584_4889917_4890048_4890170_4890290_4890872_4891002_4891185_4891333_4892185_4892237_4892333_4892377_4894755
ONT_simulated_read_2309495	chr10	+	851	6	ISM	ENSMUSG00000019977.17	ENSMUST00000020153.10	2793	18	39	26968	0	4846	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAAAAGCGGCAGGGCGG	NA	NA	NA	NA	NA	NA	NA	NA	21171916	21217829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212874_21212975_21217612
ONT_simulated_read_2310127	chr16	+	3527	28	ISM	ENSMUSG00000038084.17	ENSMUST00000038867.13	3230	30	7634	-852	997	-22	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCATGCGCTTTATATA	NA	NA	NA	NA	NA	NA	NA	NA	29405831	29471546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
ONT_simulated_read_2311155	chr15	-	653	4	ISM	ENSMUSG00000001281.11	ENST00000550743.6	1981	12	3116	6211	3116	-6211	internal_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAGTTCTCTGAGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	102132892	102130776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_102130873_102131075_102131235_102131765_102132008_102132736
ONT_simulated_read_2311448	chr14	-	606	2	ISM	ENSMUSG00000022091.7	ENSMUST00000227259.2	2481	21	20851	-199	20851	199	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCCAGGAAGCAAGGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	70421221	70418181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_70418681_70421114
ONT_simulated_read_2311474	chr19	-	2954	1	ISM	ENSMUSG00000117975.2	ENSMUST00000095998.7	3760	2	21114	630	21112	-630	mono-exon	FALSE	NA	NA	NA	NA	NA	235	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCCTGCTAGCCTTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	47886624	47883670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_47883700_47886600
ONT_simulated_read_2313357	chr9	+	942	7	ISM	ENSMUSG00000032123.6	ENST00000639704.1	1324	9	1022	79	1022	-79	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCCATTGGACCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	44239279	44244446	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
ONT_simulated_read_231380	chr15	-	1316	1	ISM	ENSMUSG00000023009.15	ENSMUST00000023747.14	4853	13	30033	4365	30033	-4365	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCAGAGTCTACTCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	99325596	99324280	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_99324300_99325600
ONT_simulated_read_2313936	chr6	+	207	2	ISM	ENSMUSG00000068263.12	ENST00000436022.2	1499	7	1919	4567	1916	-4567	internal_fragment	FALSE	canonical	NA	NA	NA	NA	298	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAACCAGAGATTCGGACAC	NA	NA	NA	NA	NA	NA	NA	NA	87709790	87726192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_87709919_87726113
ONT_simulated_read_2314439	chr1	-	523	2	ISM	ENSMUSG00000038421.14	ENST00000367959.6	937	4	5886	-1	5832	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAATGTGTATATGCACCT	NA	NA	NA	NA	NA	NA	NA	NA	170749320	170748398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_170748688_170749086
ONT_simulated_read_2314539	chr19	-	922	8	ISM	ENSMUSG00000024982.11	ENSMUST00000224291.2	2603	11	1469	2009	156	-2009	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATGGTGCCTGCTGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	55302951	55291243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732
ONT_simulated_read_2315880	chr9	+	837	7	ISM	ENSMUSG00000003299.11	ENSMUST00000003386.7	1288	9	0	1127	0	-1127	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGGAGTTCCGTGCTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	20914033	20919008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926
ONT_simulated_read_2320609	chr14	-	477	1	ISM	ENSMUSG00000021792.16	ENSMUST00000022317.15	1537	6	19151	408	19151	-408	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAACCTGAAATCTGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	40716581	40716104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_40716100_40716600
ONT_simulated_read_2321204	chr8	-	825	7	ISM	ENSMUSG00000052926.17	ENSMUST00000065049.15	1006	8	398	0	368	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	85692272	85684295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85684483_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199
ONT_simulated_read_2321233	chr15	-	251	2	ISM	ENSMUSG00000052414.10	ENST00000591834.1	1430	12	86776	0	86776	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTCCAAAGGGAAGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	102446726	102432564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_102432707_102446617
ONT_simulated_read_2321618	chr2	-	891	1	ISM	ENSMUSG00000027329.10	ENSMUST00000028801.8	2328	8	15503	628	3422	-573	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACGTGTGACAGCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	131013699	131012808	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_131012800_131013700
ONT_simulated_read_232226	chr2	-	2182	10	ISM	ENSMUSG00000005087.18	ENSMUST00000060516.14	3495	14	48259	713	48110	-696	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGATCAGGGACAGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	102683581	102643587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_102644683_102652552_102652632_102654605_102654678_102658886_102658956_102661674_102661882_102662827_102662918_102664578_102664681_102668157_102668284_102669702_102669823_102683359
ONT_simulated_read_2322745	chr3	-	1384	1	ISM	ENSMUSG00000027803.15	ENSMUST00000029380.14	4697	7	116732	2064	116732	-1931	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTACTCAATGCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	57366517	57365133	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_57365100_57366500
ONT_simulated_read_2324301	chr7	-	2555	3	ISM	ENSMUSG00000040167.17	ENST00000617859.4	4279	5	12243	1718	12243	0	internal_fragment	TRUE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATTGGTTTCTGTGTACC	NA	NA	NA	NA	NA	NA	NA	NA	130998556	130992096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_130994310_130995483_130995667_130998397
ONT_simulated_read_2324717	chr5	+	279	1	FSM	ENSMUSG00000079067.6	ENSMUST00000120716.2	279	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGCATTTTTGATAA	NA	NA	NA	NA	NA	NA	NA	NA	84271171	84271450	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_84271200_84271400
ONT_simulated_read_2324985	chr1	+	880	5	ISM	ENSMUSG00000026546.17	ENST00000368099.9	1761	11	10686	-14	10686	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	336	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACAGCTCCACTTCACTGC	NA	NA	NA	NA	NA	NA	NA	NA	172366041	172373437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_172366193_172368053_172368168_172368751_172368946_172372658_172372884_172373241
ONT_simulated_read_2326272	chr8	-	635	1	ISM	ENSMUSG00000037070.11	ENSMUST00000049245.10	1695	2	2103	892	2084	-884	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTACGGGGGTCCACC	NA	NA	NA	NA	NA	NA	NA	NA	79233424	79232789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_79232800_79233400
ONT_simulated_read_2326298	chr8	-	542	5	ISM	ENSMUSG00000031527.8	ENSMUST00000033927.8	5079	7	12812	4091	12812	-4091	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATGCTTGAAAAATTAGG	NA	NA	NA	NA	NA	NA	NA	NA	35949875	35936497	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_35936525_35941550_35941666_35943612_35943723_35945713_35945798_35949669
ONT_simulated_read_2326857	chr4	-	716	1	ISM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	4558	854	4558	-854	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCATGCCCATTACTAT	NA	NA	NA	NA	NA	NA	NA	NA	116561045	116560329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_116560300_116561000
ONT_simulated_read_2327926	chr17	+	1332	9	FSM	ENSMUSG00000023990.19	ENST00000419574.6	2329	9	-5	1002	-5	-1001	multi-exon	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGGTGAAGCAAGAGTTGC	NA	NA	NA	NA	NA	NA	NA	NA	48080162	48102339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_48080445_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
ONT_simulated_read_2329654	chr5	-	1531	7	ISM	ENSMUSG00000029657.16	ENSMUST00000202089.4	3054	17	12742	-203	12575	-121	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	159	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCACCACACAGTGCATTG	NA	NA	NA	NA	NA	NA	NA	NA	149547061	149540430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929
ONT_simulated_read_2329810	chr13	+	646	4	ISM	ENSMUSG00000017756.10	ENSMUST00000017900.9	5142	24	37244	10325	37244	-10325	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGATGGTGCGTGCACAG	NA	NA	NA	NA	NA	NA	NA	NA	73949059	73954548	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_73949216_73953532_73953729_73954147_73954318_73954424
ONT_simulated_read_2330859	chr17	+	797	5	ISM	ENSMUSG00000023963.11	ENSMUST00000233627.2	2338	11	15	65639	0	-65044	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACGGATCTGCAGGTCATT	NA	NA	NA	NA	NA	NA	NA	NA	43978415	43996142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_43978686_43987721_43987858_43991014_43991190_43993838_43993989_43996076
ONT_simulated_read_2333518	chr10	-	508	1	ISM	ENSMUSG00000019832.6	ENSMUST00000019974.5	2149	3	11851	905	11851	-905	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTCTTTTCTAAGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	10422158	10421650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_10421600_10422200
ONT_simulated_read_2333908	chr13	-	407	4	ISM	ENSMUSG00000016018.5	ENSMUST00000022281.5	3689	27	14221	41475	14221	-41475	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCGGGGCTTAGCTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	113049711	113045426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_113045532_113046349_113046449_113047443_113047569_113049633
ONT_simulated_read_233434	chrX	+	112	1	FSM	ENSMUSG00000082467.2	ENSMUST00000117345.2	1066	1	0	954	0	-954	mono-exon	FALSE	NA	NA	NA	NA	NA	704	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCAGTTCCTGACTACTGC	NA	NA	NA	NA	NA	NA	NA	NA	60874115	60874227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_60874100_60874200
ONT_simulated_read_2335561	chr3	-	524	1	ISM	ENSMUSG00000036381.14	ENSMUST00000197841.2	2476	2	14722	1662	14582	-585	mono-exon	FALSE	NA	NA	NA	NA	NA	228	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCAAAAACGAGCTGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	59023461	59022937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_59022900_59023500
ONT_simulated_read_2335864	chrX	-	435	2	ISM	ENSMUSG00000073177.9	ENSMUST00000101561.8	951	8	19137	0	19137	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATTTTTTGCAATGTTA	NA	NA	NA	NA	NA	NA	NA	NA	55239104	55235186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_55235530_55239012
ONT_simulated_read_233680	chr16	+	652	3	ISM	ENSMUSG00000040605.8	ENST00000347667.5	3030	8	-47	30038	0	-30038	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTTGGCCAAGGTAAGG	NA	NA	NA	NA	NA	NA	NA	NA	97157941	97209679	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_97158302_97200833_97200923_97209476
ONT_simulated_read_2336879	chr1	-	405	3	ISM	ENSMUSG00000052748.15	ENSMUST00000064771.12	3688	20	8308	43459	8308	-43459	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAATAAAGACAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	151295898	151286908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_151287210_151288541_151288598_151295850
ONT_simulated_read_2337278	chr7	-	1111	1	ISM	ENSMUSG00000030879.11	ENSMUST00000124482.3	7300	3	955	5828	852	646	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATGTCTTTTTATGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	105459351	105458240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105458200_105459400
ONT_simulated_read_2341691	chr8	+	429	4	ISM	ENSMUSG00000031659.14	ENST00000566433.6	1850	13	5661	4410	5661	-4410	internal_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGAAAGAGATGAACATCC	NA	NA	NA	NA	NA	NA	NA	NA	89038884	89042462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_89038940_89040716_89040845_89042084_89042244_89042375
ONT_simulated_read_2341934	chr11	-	449	3	ISM	ENSMUSG00000056962.12	ENSMUST00000047616.10	1668	6	2118	1647	1862	-1449	internal_fragment	FALSE	canonical	NA	NA	NA	NA	994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCCAGGAGTCCACAGGC	NA	NA	NA	NA	NA	NA	NA	NA	116732157	116729904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_116729955_116731235_116731372_116731894
ONT_simulated_read_2342826	chr15	-	1037	7	ISM	ENSMUSG00000016757.12	ENSMUST00000016901.5	3774	14	12934	1655	12934	-1655	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCAACCCTCCTGAGCCG	NA	NA	NA	NA	NA	NA	NA	NA	83466424	83460945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_83461250_83461947_83462087_83462835_83462905_83464268_83464351_83464695_83464848_83465868_83465981_83466245
ONT_simulated_read_2344211	chr10	-	1419	2	ISM	ENSMUSG00000036955.17	ENST00000674936.1	1971	4	7909	29	7909	-29	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	983	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGTTGTAAAATGGCTTA	NA	NA	NA	NA	NA	NA	NA	NA	62406255	62394321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62395663_62406177
ONT_simulated_read_2344949	chr16	-	1113	7	ISM	ENSMUSG00000022962.16	ENSMUST00000232289.2	3276	22	10779	6710	10773	5291	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCAAAGCTTTTGCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	91433040	91425001	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881
ONT_simulated_read_2345012	chr7	+	419	2	ISM	ENSMUSG00000042831.14	ENST00000485128.5	703	6	3185	-114	3185	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	30012099	30013729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_30012133_30013343
ONT_simulated_read_2345179	chr11	-	2831	1	ISM	ENSMUSG00000010803.14	ENST00000428797.7	4278	11	49141	21	46490	0	mono-exon	FALSE	NA	NA	NA	NA	NA	996	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAATACTTGATTCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	42024596	42021765	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_42021800_42024600
ONT_simulated_read_2347078	chr7	-	1220	8	ISM	ENSMUSG00000078762.11	ENSMUST00000019697.9	2187	19	6032	-5	6032	5	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTGCCCAGTTTTATCAA	NA	NA	NA	NA	NA	NA	NA	NA	30358387	30353135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358091_30358277
ONT_simulated_read_2351483	chr6	+	811	6	ISM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	4868	264	4808	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	67248862	67261031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ONT_simulated_read_2354940	chr10	+	1416	7	ISM	ENSMUSG00000019978.17	ENST00000524581.5	1796	8	2484	103	2484	-92	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	107	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGCTCAAATGACAGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	25371378	25398519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_25371490_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388984_25398194
ONT_simulated_read_2360672	chr7	-	1165	6	ISM	ENSMUSG00000030979.14	ENSMUST00000106146.8	1483	10	9752	0	9752	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATCTGAGTATGGTAGC	NA	NA	NA	NA	NA	NA	NA	NA	133300935	133288084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872
ONT_simulated_read_2361980	chr16	-	763	1	ISM	ENSMUSG00000116656.2	ENSMUST00000231663.2	1236	2	7058	227	7058	-227	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGCGCAGCTGCGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	90139472	90138709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_90138700_90139500
ONT_simulated_read_2364144	chr9	-	1367	2	ISM	ENSMUSG00000048537.17	ENST00000356063.9	5060	20	10555	25555	-3359	-25555	internal_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGGACCTGAGACTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	44627921	44623163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44623220_44626610
ONT_simulated_read_2364610	chr10	-	722	7	ISM	ENSMUSG00000034667.9	ENSMUST00000039810.8	5992	25	23903	2712	23903	-2712	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACACTGGTCCTTTAGCA	NA	NA	NA	NA	NA	NA	NA	NA	121438318	121425996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135
ONT_simulated_read_2365644	chr11	+	512	5	ISM	ENSMUSG00000017715.12	ENST00000262764.11	1815	10	22	21165	22	-21165	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTATGCTGCTCCCACTC	NA	NA	NA	NA	NA	NA	NA	NA	117877710	117893191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_117877840_117888266_117888457_117891024_117891103_117892441_117892542_117893176
ONT_simulated_read_2365902	chr19	-	190	1	ISM	ENSMUSG00000025195.10	ENSMUST00000212396.2	6100	16	91936	1245	26768	-99	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCGCTTTCAGTCCGACGG	NA	NA	NA	NA	NA	NA	NA	NA	43836694	43836504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_43836500_43836700
ONT_simulated_read_2370400	chr17	-	625	5	ISM	ENSMUSG00000024026.14	ENSMUST00000167624.2	895	7	12480	-5	12423	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGGCAGCAAGTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	30819153	30811834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_30812049_30813088_30813201_30815347_30815438_30816778_30816847_30819012
ONT_simulated_read_237057	chr2	+	774	6	ISM	ENSMUSG00000017861.12	ENST00000396863.8	2616	13	108	10951	0	-10951	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGAGAGCAGCGAGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	162896606	162914587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_162896769_162901420_162901515_162904376_162904470_162906199_162906421_162910075_162910236_162914543
ONT_simulated_read_2373877	chr14	-	820	4	FSM	ENSMUSG00000022223.10	ENST00000555365.5	782	4	8	-46	3	46	multi-exon	FALSE	canonical	NA	NA	NA	NA	2295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGAGAAGTGGGTCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	56137370	56135015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137270
ONT_simulated_read_2374423	chr10	+	1001	1	FSM	ENSMUSG00000045008.3	ENSMUST00000238274.2	1864	1	5	858	5	-858	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTCCCCGGCTTGTTATT	NA	NA	NA	NA	NA	NA	NA	NA	43050699	43051700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_43050700_43051700
ONT_simulated_read_237544	chr18	-	1563	10	ISM	ENSMUSG00000001380.8	ENST00000438307.6	1449	11	9176	-226	9176	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCTGTGTCCTTGATGC	NA	NA	NA	NA	NA	NA	NA	NA	36906647	36899580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904380_36904489_36905310_36905437_36906572
ONT_simulated_read_2376181	chr5	-	1111	8	ISM	ENSMUSG00000025534.18	ENSMUST00000026613.14	2687	12	2530	4518	2346	-4518	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGATTCAGCCACAGCT	NA	NA	NA	NA	NA	NA	NA	NA	130029360	130022369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029201
ONT_simulated_read_2377304	chr18	-	1104	4	ISM	ENSMUSG00000024613.17	ENSMUST00000175934.8	4595	26	32400	0	32400	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	NA	NA	NA	NA	NA	NA	NA	60949601	60946826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072
ONT_simulated_read_2377495	chr7	-	933	2	ISM	ENSMUSG00000002985.17	ENSMUST00000173739.8	1221	3	776	52	636	-52	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCACCTCTCTGGCCCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	19431556	19430248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_19431029_19431403
ONT_simulated_read_2380299	chr19	-	176	1	ISM	ENSMUSG00000025208.10	ENSMUST00000097715.4	1398	3	750	688	750	-688	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGCCTCCTTGCAAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	44994131	44993955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_44994000_44994100
ONT_simulated_read_2380823	chr2	+	803	6	ISM	ENSMUSG00000027323.11	ENST00000382643.7	1157	8	7489	0	7489	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTGGTAGCAGAAACACAT	NA	NA	NA	NA	NA	NA	NA	NA	118954283	118965798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
ONT_simulated_read_2381938	chr6	+	546	5	ISM	ENSMUSG00000016487.16	ENSMUST00000111623.9	4782	28	122290	12445	122290	-12445	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAACAGGTAAGTATACCT	NA	NA	NA	NA	NA	NA	NA	NA	146912376	146921078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_146912418_146913952_146914017_146917719_146917892_146920531_146920680_146920957
ONT_simulated_read_2382126	chr17	-	1309	1	ISM	ENSMUSG00000034647.16	ENSMUST00000038116.13	10821	13	89581	20486	89581	-20486	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAAAGGTAAAAGATCC	NA	NA	NA	NA	NA	NA	NA	NA	66294487	66293178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_66293200_66294500
ONT_simulated_read_2382880	chr3	-	1418	1	ISM	ENSMUSG00000027715.10	ENSMUST00000029270.10	2965	8	5868	0	5269	0	mono-exon	FALSE	NA	NA	NA	NA	NA	512	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATTTGGTGGGCTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	36620431	36619013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_36619000_36620400
ONT_simulated_read_2384867	chr8	+	435	3	ISM	ENSMUSG00000031447.8	ENSMUST00000033824.8	2229	9	0	8139	0	-8132	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCAGTTCTTGTGGTAA	NA	NA	NA	NA	NA	NA	NA	NA	13209160	13217199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_13209435_13215848_13215968_13217157
ONT_simulated_read_2387702	chr7	-	491	4	ISM	ENSMUSG00000030619.11	ENSMUST00000238792.2	1503	12	15861	555	15774	-555	internal_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTATGCCATCCTTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	89614049	89604699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_89604813_89605462_89605622_89611463_89611570_89613936
ONT_simulated_read_2388700	chr6	-	2381	11	ISM	ENSMUSG00000061436.16	ENSMUST00000160962.8	3972	15	91508	0	73595	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGTTAGTAACAAAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	38722651	38674814	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_38675532_38676186_38676351_38680373_38680622_38692874_38693157_38695688_38695869_38698389_38698530_38706855_38706978_38707803_38707931_38714292_38714456_38720010_38720196_38722598
ONT_simulated_read_2388744	chr11	+	509	6	ISM	ENSMUSG00000020333.18	ENSMUST00000094194.10	2554	21	25373	404	25373	-100	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAATGGTCTGCTGACAC	NA	NA	NA	NA	NA	NA	NA	NA	54236054	54251923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
ONT_simulated_read_2389340	chr14	+	568	7	ISM	ENSMUSG00000025555.15	ENSMUST00000026635.8	4885	27	66515	48655	66515	-48655	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGCTCCTAGAGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	121339490	121472501	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_121339595_121444665_121444771_121456788_121456832_121460051_121460131_121468040_121468139_121471141_121471257_121472477
ONT_simulated_read_2390778	chr8	+	765	7	ISM	ENSMUSG00000003573.16	ENSMUST00000140212.8	2608	10	3104	1330	539	-133	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGGAGGCGCGGGCCGA	NA	NA	NA	NA	NA	NA	NA	NA	70738580	70745681	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70738713_70742043_70742152_70742701_70742824_70743656_70743814_70743967_70744079_70744175_70744254_70745624
ONT_simulated_read_2390969	chr8	+	1395	9	ISM	ENSMUSG00000031565.19	ENST00000341462.9	2966	17	510	6797	510	-6797	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAGATGGCTGTGCACAA	NA	NA	NA	NA	NA	NA	NA	NA	26009359	26056872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_26009446_26022265_26022445_26045523_26045791_26047746_26047831_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726
ONT_simulated_read_2390986	chr9	-	881	6	ISM	ENSMUSG00000032127.10	ENSMUST00000034644.10	3536	16	7116	4979	7116	-4979	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATCCGAGATTACCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	44265851	44264024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705
ONT_simulated_read_2393332	chr2	+	1129	8	ISM	ENSMUSG00000026812.17	ENST00000647078.1	1394	10	-35	1049	0	-644	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	185	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCTGAGCCGCTGCAAGT	NA	NA	NA	NA	NA	NA	NA	NA	28548578	28561875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777
ONT_simulated_read_2396068	chr10	-	935	5	ISM	ENSMUSG00000055531.13	ENSMUST00000176670.8	2227	11	10765	11899	10764	-7136	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCAGATAGTCGAGGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	117202069	117196845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_117197266_117197678_117197790_117197918_117198093_117198879_117199026_117201985
ONT_simulated_read_2397759	chr11	-	1713	12	ISM	ENSMUSG00000020687.14	ENSMUST00000093923.9	5425	19	18628	10226	18537	7283	internal_fragment	FALSE	canonical	NA	NA	NA	NA	498	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATGCATTTCCAGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	104422681	104403796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_104403845_104406197_104406407_104408201_104408355_104411489_104411663_104412206_104412415_104413548_104413649_104416876_104416993_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555
ONT_simulated_read_2402720	chr2	+	339	1	ISM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	0	27161	0	-27161	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGAGTCCGAGAGCAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	109848161	109848500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_109848200_109848500
ONT_simulated_read_240301	chr9	+	1801	5	NIC	ENSMUSG00000040652.17	novel	1843	6	NA	NA	0	0	intron_retention	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTCTGTCTTTTTATTC	NA	NA	NA	NA	NA	NA	NA	NA	65583872	65597582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_65584048_65593477_65593636_65595079_65595256_65596102_65596189_65596376
ONT_simulated_read_2404058	chr6	+	326	5	ISM	ENSMUSG00000034245.11	ENST00000446613.6	996	8	8250	1039	8250	-118	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGAGAGGAATGTCAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	91142632	91149208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_91142660_91144785_91144863_91145790_91145854_91146376_91146474_91149146
ONT_simulated_read_2404096	chr4	+	203	1	ISM	ENSMUSG00000028797.21	ENSMUST00000102591.10	1437	5	7646	0	7635	0	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	129502118	129502321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_129502100_129502300
ONT_simulated_read_2405751	chr11	+	990	8	ISM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	282	638	125	-563	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTCTGGATGAATA	NA	NA	NA	NA	NA	NA	NA	NA	70538394	70541609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589
ONT_simulated_read_2408202	chr4	-	591	5	ISM	ENSMUSG00000028409.12	ENSMUST00000030117.5	2418	12	13798	806	13798	-806	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	142	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATTGCCACCTACAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	40744125	40737347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030
ONT_simulated_read_240996	chr3	-	2964	8	ISM	ENSMUSG00000070372.12	ENSMUST00000094028.10	3193	10	21792	0	21792	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCCTTCCTGAGTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	104750029	104730094	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976
ONT_simulated_read_2410785	chr10	+	755	5	ISM	ENSMUSG00000075706.12	ENST00000589115.6	809	6	865	-13	0	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	79890298	79892273	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_79890443_79890533_79890679_79890801_79890954_79891873_79891934_79892019
ONT_simulated_read_2415098	chr6	+	776	1	FSM	ENSMUSG00000108286.2	ENSMUST00000204131.2	1463	1	0	687	0	-687	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGACCTTCTTGAAGTA	NA	NA	NA	NA	NA	NA	NA	NA	93056088	93056864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_93056100_93056900
ONT_simulated_read_241646	chr13	-	484	6	ISM	ENSMUSG00000055137.8	ENST00000401647.7	728	9	31932	0	31932	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGTATGCAAGGTAATCC	NA	NA	NA	NA	NA	NA	NA	NA	17837388	17497802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_17497862_17627041_17627138_17752074_17752167_17819365_17819487_17836803_17836855_17837323
ONT_simulated_read_2417066	chr18	-	1590	3	ISM	ENSMUSG00000005873.7	ENSMUST00000006027.7	2852	5	16139	1002	16116	974	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	835	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTACCAAAGTTAACAACA	NA	NA	NA	NA	NA	NA	NA	NA	34490283	34478939	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_34480222_34482687_34482857_34490144
ONT_simulated_read_2418278	chr1	-	1754	14	ISM	ENSMUSG00000025968.17	ENST00000440274.5	2258	17	22	4747	22	-4609	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTATTTTTGAGGCATTT	NA	NA	NA	NA	NA	NA	NA	NA	63210046	63187554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63209208_63209301_63210007
ONT_simulated_read_2423046	chr7	-	556	4	ISM	ENSMUSG00000025474.10	ENST00000682905.1	2750	17	34874	-2	34874	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	322	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTCCTGCGCAATGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	139578825	139575960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681
ONT_simulated_read_2424793	chr7	-	2479	19	ISM	ENSMUSG00000062444.16	ENST00000666973.1	3116	25	15556	2616	15556	-2616	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGCCAACTTCCAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	81127814	81113010	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693_81126978_81127063_81127247_81127335_81127403_81127653
ONT_simulated_read_2426351	chr7	-	2236	15	ISM	ENSMUSG00000030530.16	ENSMUST00000120753.3	4332	16	2778	1816	-107	-1816	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCGCCCTGAGGTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	80048677	80040759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80041045_80041255_80041367_80041475_80041601_80041934_80042115_80042217_80042336_80042421_80042526_80042631_80042733_80043156_80043370_80045082_80045256_80045707_80045797_80046676_80046754_80046869_80046999_80047645_80047742_80047842_80047942_80048341
ONT_simulated_read_243095	chr6	-	1529	10	ISM	ENSMUSG00000040250.15	ENSMUST00000032427.15	3059	18	55	7650	55	-7647	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTGCCTTACTAATTT	NA	NA	NA	NA	NA	NA	NA	NA	146479278	146458779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
ONT_simulated_read_2431683	chr16	-	735	7	ISM	ENSMUSG00000013539.15	ENST00000432883.5	797	8	19482	24	4	-24	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCACACTACAGAGTTAG	NA	NA	NA	NA	NA	NA	NA	NA	18142315	18119315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18130502_18130623_18134509_18134599_18142220
ONT_simulated_read_2437102	chr1	-	1107	1	FSM	ENSMUSG00000056708.6	ENSMUST00000055322.6	3276	1	0	2169	0	-2169	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCACAGCCATCGTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	154975382	154974275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_154974300_154975400
ONT_simulated_read_2438240	chr8	-	1513	1	ISM	ENSMUSG00000031529.6	ENSMUST00000033929.6	9163	27	133977	3741	133977	-3741	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTAATGCAAGCAT	NA	NA	NA	NA	NA	NA	NA	NA	35298867	35297354	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_35297400_35298900
ONT_simulated_read_2438293	chr8	-	318	1	ISM	ENSMUSG00000052488.8	ENSMUST00000079510.6	3713	18	13776	537	13776	-396	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGATTTTCTGACTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	73215187	73214869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_73214900_73215200
ONT_simulated_read_2441145	chr12	-	861	1	ISM	ENSMUSG00000020647.11	ENST00000395856.3	6735	20	58271	48026	48271	-46186	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTACTGTCTTGCACTGG	NA	NA	NA	NA	NA	NA	NA	NA	4346229	4345368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_4345400_4346200
ONT_simulated_read_2441299	chr17	-	622	1	NIC	ENSMUSG00000024335.21	novel	3170	11	NA	NA	4636	-869	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTTGAGCGATATGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	34332827	34332205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_34332200_34332800
ONT_simulated_read_2442540	chr9	-	922	8	ISM	ENSMUSG00000032562.14	ENSMUST00000192615.6	1777	9	90	1661	90	-1661	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTTTGAGGATCTAAATA	NA	NA	NA	NA	NA	NA	NA	NA	107512421	107492984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
ONT_simulated_read_2443125	chr19	+	526	3	ISM	ENSMUSG00000040385.8	ENST00000527663.6	1203	6	2438	71	2438	-71	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	940	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGGGTCTCCAGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	4244647	4245329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4244690_4244770_4244906_4244980
ONT_simulated_read_2443644	chr7	-	1828	3	ISM	ENSMUSG00000025104.14	ENST00000299633.7	5528	7	34588	3178	34588	-3178	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTGCTCCTGCCGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	81549561	81534290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_81535832_81543546_81543694_81549421
ONT_simulated_read_2446040	chr19	-	335	3	ISM	ENSMUSG00000024792.10	ENSMUST00000025707.9	1287	8	2164	1499	2164	-1499	internal_fragment	FALSE	canonical	NA	NA	NA	NA	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCGCCCTCCTCCCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	6132809	6132290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6132358_6132428_6132502_6132614
ONT_simulated_read_2446872	chr10	-	479	1	ISM	ENSMUSG00000020079.16	ENSMUST00000020273.16	2604	15	19938	113	19938	-113	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTTTGTTTGTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	62265579	62265100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62265100_62265600
ONT_simulated_read_244834	chr5	-	1463	11	ISM	ENSMUSG00000001082.13	ENSMUST00000114329.8	1906	13	670	0	667	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCCTTTCCGTCTTACT	NA	NA	NA	NA	NA	NA	NA	NA	34793866	34790992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753
ONT_simulated_read_2449437	chr7	-	766	1	ISM	ENSMUSG00000030888.15	ENSMUST00000033179.14	3053	7	3657	629	3657	45	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGCTGAAGAAATCATTTAC	NA	NA	NA	NA	NA	NA	NA	NA	105382331	105381565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105381600_105382300
ONT_simulated_read_2449779	chr4	+	1980	2	ISM	ENSMUSG00000085399.8	ENSMUST00000123272.2	2908	4	0	7371	0	-7371	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGAAGCAATGGGTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	114766453	114770944	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_114766856_114769366
ONT_simulated_read_2452476	chr11	+	1089	4	ISM	ENSMUSG00000020458.17	ENSMUST00000060992.6	1773	7	22435	0	22435	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	29690997	29692916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_29691051_29691499_29691547_29691694_29691754_29691986
ONT_simulated_read_2452897	chr1	-	1810	6	ISM	ENSMUSG00000037624.16	ENSMUST00000193319.6	1548	7	3299	-614	3299	568	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACAGATGCCAACTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	189072253	188941372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_188942305_188975083_188975224_188988764_188988952_188990934_188991096_189027790_189027909_189071981
ONT_simulated_read_2453258	chr8	+	554	4	ISM	ENSMUSG00000031766.5	ENSMUST00000212134.2	4310	24	5	26680	-2	-26680	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTCATGGTGACATCCATC	NA	NA	NA	NA	NA	NA	NA	NA	95055837	95059881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_95056142_95057004_95057152_95058278_95058355_95059854
ONT_simulated_read_2454309	chr6	-	497	1	FSM	ENSMUSG00000081113.2	ENSMUST00000121087.2	447	1	0	-50	0	50	mono-exon	FALSE	NA	NA	NA	NA	NA	2452	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTTTGTTTGTAA	NA	NA	NA	NA	NA	NA	NA	NA	127259472	127258975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_127259000_127259500
ONT_simulated_read_2454932	chr1	-	876	7	ISM	ENSMUSG00000053483.16	ENSMUST00000111305.8	2278	13	3938	-4	3938	0	3prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCATGTTTGTATTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	171111559	171109518	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534
ONT_simulated_read_2455166	chr12	-	1694	4	ISM	ENSMUSG00000044573.17	ENSMUST00000074038.7	2754	6	6758	886	312	-886	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACCTGACTCTTCCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	30954830	30944540	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716
ONT_simulated_read_2456485	chr11	+	1570	7	ISM	ENSMUSG00000020781.15	ENSMUST00000021134.10	1979	11	974	0	942	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCAATACTTACAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	115706523	115713920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
ONT_simulated_read_2457600	chr3	-	1261	4	ISM	ENSMUSG00000028018.16	ENSMUST00000029651.11	3503	12	92876	433	92873	-433	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGCTGCCTATGTTT	NA	NA	NA	NA	NA	NA	NA	NA	132704710	132687945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_132688981_132692145_132692216_132701926_132701958_132704585
ONT_simulated_read_2462690	chr15	-	396	1	ISM	ENSMUSG00000061360.9	ENSMUST00000023117.10	1663	4	6047	949	6047	-949	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGGGTTGTCCTGTGACC	NA	NA	NA	NA	NA	NA	NA	NA	81750065	81749669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81749700_81750100
ONT_simulated_read_2463651	chr10	-	577	1	ISM	ENSMUSG00000025358.17	ENSMUST00000026415.9	2240	7	6481	7	6481	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTGTAGAGTGAATCTCT	NA	NA	NA	NA	NA	NA	NA	NA	128534391	128533814	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128533800_128534400
ONT_simulated_read_2465476	chr15	+	1263	10	ISM	ENSMUSG00000022556.12	ENSMUST00000229363.2	1965	11	0	915	0	-915	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTCTGGTCATCCCTAC	NA	NA	NA	NA	NA	NA	NA	NA	76361773	76384253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147
ONT_simulated_read_2465870	chrX	-	419	3	ISM	ENSMUSG00000015290.16	ENSMUST00000155676.8	2442	4	433	1747	433	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGGGAGAAATCCCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	73411846	73411070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_73411193_73411306_73411516_73411758
ONT_simulated_read_2466033	chr1	+	848	5	ISM	ENSMUSG00000026111.16	ENSMUST00000118059.3	1179	6	-32	1566	0	-1563	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTATGGTTGATTGCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	37469250	37476502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_37469509_37470373_37470658_37471631_37471753_37476242_37476383_37476457
ONT_simulated_read_2466971	chr11	-	810	5	FSM	ENSMUSG00000018168.9	ENST00000350532.7	1331	5	0	521	0	-521	multi-exon	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCATCAGCAGTGTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	98407763	98358332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_98358513_98376399_98376517_98379677_98379846_98381157_98381416_98407676
ONT_simulated_read_2467709	chr5	-	1832	9	ISM	ENSMUSG00000036596.7	ENST00000315782.6	1993	10	7827	-1	7827	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTCTCAGGCCCGACCTT	NA	NA	NA	NA	NA	NA	NA	NA	35675112	35659676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_35660026_35660995_35661096_35664015_35664156_35665461_35665598_35668366_35668526_35669046_35669209_35669754_35669952_35672694_35672908_35674736
ONT_simulated_read_2468762	chr10	+	2152	14	ISM	ENSMUSG00000020024.8	ENSMUST00000020212.6	3639	16	64	4089	64	-4089	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTGAAGAGACTACAGGA	NA	NA	NA	NA	NA	NA	NA	NA	94524579	94622626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_94524909_94554713_94554982_94555453_94555605_94561508_94561602_94564452_94564585_94573634_94573887_94575918_94576051_94584802_94584918_94586120_94586266_94586371_94586522_94602303_94602380_94604680_94604839_94606806_94606937_94622605
ONT_simulated_read_2469471	chr19	-	1024	6	ISM	ENSMUSG00000025228.6	ENSMUST00000040270.6	2757	11	14614	1223	14605	-1220	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	279	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTAGGCTGGGCTGGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	46369572	46366472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355
ONT_simulated_read_2470437	chr4	-	175	1	ISM	ENSMUSG00000028234.7	ENSMUST00000138502.2	3706	4	1004	3153	631	7	mono-exon	FALSE	NA	NA	NA	NA	NA	460	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTCTTAATGGTCAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	3834661	3834486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_3834500_3834700
ONT_simulated_read_2473033	chrX	-	278	1	Genic_Genomic	ENSMUSG00000081937.2	novel	NA	NA	NA	NA	3773	153	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACAAAGTTAACTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	52818220	52817942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chrX_-_52817900_52818200
ONT_simulated_read_2473475	chr2	-	1845	16	ISM	ENSMUSG00000027010.17	ENSMUST00000151937.8	6351	18	23717	4215	23717	-4215	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTACAGACTTGCCACGGC	NA	NA	NA	NA	NA	NA	NA	NA	71174376	71105621	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71174233
ONT_simulated_read_2475201	chr13	-	804	6	ISM	ENSMUSG00000021493.16	ENSMUST00000069968.13	1006	8	4418	0	4414	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCCTCTGTCTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	55656833	55654585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_55654937_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704
ONT_simulated_read_247552	chr9	+	503	5	ISM	ENSMUSG00000004100.13	ENSMUST00000004203.6	1670	11	2463	614	2463	-614	internal_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCGCGAGGCCCACAAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	20801933	20802860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746
ONT_simulated_read_2477072	chr17	-	1491	10	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	560	-1008	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCCAGCTAGTTCGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	46593365	46569810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46582725_46582856_46593271
ONT_simulated_read_2477644	chr10	-	643	8	ISM	ENSMUSG00000004937.7	ENST00000221566.7	1007	11	9083	97	9083	-97	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCAGCAGCAGAACCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	80886918	80882124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832
ONT_simulated_read_2477836	chr18	-	868	4	ISM	ENSMUSG00000024622.9	ENSMUST00000235480.2	5131	20	5652	31604	5652	-31604	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGTCTATTCCACAACAG	NA	NA	NA	NA	NA	NA	NA	NA	61304417	61295967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_61296101_61298556_61298656_61300267_61300766_61304279
ONT_simulated_read_2482695	chr7	-	1120	10	ISM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	34950	40659	34950	-40659	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTGATCTCTATCAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	80418214	80401989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80402102_80405927_80406013_80407151_80407316_80407921_80408007_80409505_80409685_80410562_80410677_80412245_80412314_80415042_80415120_80416632_80416711_80418056
ONT_simulated_read_2485005	chr12	+	1131	7	ISM	ENSMUSG00000021065.17	ENST00000674118.1	2782	11	33	63139	0	-63139	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAGGAAGCTGGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	77285838	77459504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_77286028_77324134_77324230_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485
ONT_simulated_read_2485645	chr2	+	2091	17	ISM	ENSMUSG00000040549.17	ENSMUST00000111337.3	6384	42	8907	43011	8907	-43010	internal_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTGAAGGGGGCAATGATG	NA	NA	NA	NA	NA	NA	NA	NA	91385584	91407997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_91385784_91386844_91386978_91387919_91388021_91389393_91389508_91391151_91391257_91393098_91393189_91393293_91393459_91394664_91394794_91395965_91396149_91398481_91398596_91398981_91399093_91400524_91400618_91402692_91402879_91403317_91403413_91406360_91406419_91406507_91406634_91407908
ONT_simulated_read_2490973	chr9	+	789	4	FSM	ENSMUSG00000040652.17	ENST00000559753.1	785	4	-2	-2	0	2	multi-exon	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTATGAACTGGCATT	NA	NA	NA	NA	NA	NA	NA	NA	65583872	65596728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_65584048_65595079_65595256_65596102_65596189_65596376
ONT_simulated_read_2491520	chr2	-	139	1	NIC	ENSMUSG00000000394.16	novel	1088	6	NA	NA	6688	0	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTCTCGGGCTGATTAT	NA	NA	NA	NA	NA	NA	NA	NA	62307306	62307167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_62307200_62307300
ONT_simulated_read_2493746	chr17	-	678	5	ISM	ENSMUSG00000019214.15	ENSMUST00000170070.3	3208	22	6706	121	6706	-121	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTGGGTCAGGCTCATAG	NA	NA	NA	NA	NA	NA	NA	NA	25939678	25938020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573
ONT_simulated_read_2494728	chr16	+	1019	4	ISM	ENSMUSG00000041957.16	ENSMUST00000039408.3	2918	13	0	42016	0	-42016	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTACCAGTATCCAAGATC	NA	NA	NA	NA	NA	NA	NA	NA	16031181	16048560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_16031460_16043164_16043278_16043583_16044156_16048504
ONT_simulated_read_2494903	chr2	-	275	2	ISM	ENSMUSG00000027224.15	ENSMUST00000028653.14	1026	6	1564	1024	1564	-1024	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCACTGGTCTCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	122135743	122135249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_122135325_122135543
ONT_simulated_read_2495429	chr6	-	3249	10	ISM	ENSMUSG00000061838.8	ENSMUST00000079847.8	2518	11	37289	-1133	37289	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCAGTAGTGTGGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	95632574	95449989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438
ONT_simulated_read_2496861	chr5	-	728	1	FSM	ENSMUSG00000080875.5	ENSMUST00000118351.3	454	1	0	-274	0	274	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAATCA	NA	NA	NA	NA	NA	NA	NA	NA	9311388	9310660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_9310700_9311400
ONT_simulated_read_2497194	chr10	-	1598	12	ISM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	2232	0	1469	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	NA	NA	NA	NA	NA	NA	NA	NA	116897487	116886905	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409
ONT_simulated_read_2497324	chrX	-	139	2	ISM	ENSMUSG00000046032.17	ENSMUST00000077876.4	1002	5	8715	324	8701	-324	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAGGGGACTTGGAACCC	NA	NA	NA	NA	NA	NA	NA	NA	100257454	100255888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_100255953_100257379
ONT_simulated_read_2498280	chr1	-	1023	10	ISM	ENSMUSG00000006010.15	ENSMUST00000111913.9	3273	14	4433	10760	4072	-9544	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAGACTTGGAAATTGCA	NA	NA	NA	NA	NA	NA	NA	NA	150264398	150247815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273
ONT_simulated_read_2499557	chr16	-	681	5	ISM	ENSMUSG00000022890.14	ENSMUST00000114191.8	742	6	498	0	498	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	NA	NA	NA	NA	NA	NA	NA	84631893	84624758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_84624884_84625312_84625438_84628216_84628396_84630707_84630763_84631696
ONT_simulated_read_2500188	chr17	-	655	1	ISM	ENSMUSG00000024393.15	ENSMUST00000025253.12	6888	31	7738	7429	5810	-7417	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTCCGAGGAGACGATGG	NA	NA	NA	NA	NA	NA	NA	NA	35376135	35375480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_35375500_35376100
ONT_simulated_read_2500922	chr18	-	1215	4	ISM	ENSMUSG00000002475.17	ENSMUST00000117828.9	1962	9	54409	0	54344	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTTTGTGAGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	10652362	10644410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_10645236_10647725_10647892_10647969_10648019_10652187
ONT_simulated_read_2502146	chr5	-	720	5	ISM	ENSMUSG00000029512.12	ENSMUST00000200299.2	3581	28	22108	0	22108	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGCTGCCAGCCAACTC	NA	NA	NA	NA	NA	NA	NA	NA	110935811	110933959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638
ONT_simulated_read_2503219	chr1	-	1151	10	ISM	ENSMUSG00000026618.12	ENSMUST00000110975.8	2801	17	5582	8302	5582	-8302	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGCTGAGCAGCTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	185056011	185035536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_185035599_185048090_185048252_185050003_185050156_185050760_185050852_185053033_185053204_185054596_185054713_185055017_185055109_185055189_185055300_185055382_185055433_185055863
ONT_simulated_read_2503338	chr6	+	856	5	NNC	ENSMUSG00000036371.7	novel	1617	8	NA	NA	5	-11075	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGGTTTGTGTGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	67243999	67249923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249217_67249847
ONT_simulated_read_2503841	chr11	-	263	4	ISM	ENSMUSG00000018697.15	ENST00000616434.2	1689	11	46041	43	45978	-43	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGCACCTATTGACCACA	NA	NA	NA	NA	NA	NA	NA	NA	84358370	84333433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_84333464_84336452_84336534_84339945_84340014_84358286
ONT_simulated_read_250575	chr2	+	244	3	ISM	ENSMUSG00000039041.16	ENSMUST00000061437.5	1535	10	3870	385	3870	-385	internal_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGTGCCAGTTCGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	179817147	179817694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_179817186_179817390_179817549_179817646
ONT_simulated_read_2505826	chr2	-	890	1	ISM	ENSMUSG00000048222.4	ENSMUST00000056732.4	3362	7	11794	1149	11794	-1149	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCACTCATCCAAAGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	121292754	121291864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_121291900_121292800
ONT_simulated_read_2506582	chr7	+	881	9	ISM	ENSMUSG00000030890.17	ENSMUST00000033182.10	1795	13	79	1287	4	-1249	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACCCAACCCTCATCACA	NA	NA	NA	NA	NA	NA	NA	NA	105385877	105390845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105385924_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786
ONT_simulated_read_2507386	chr8	-	1078	12	ISM	ENSMUSG00000031878.19	ENSMUST00000162466.8	1735	19	11025	9	11025	-9	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTAATATAGTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	105250243	105237668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207
ONT_simulated_read_2508514	chr5	-	1729	11	ISM	ENSMUSG00000029405.17	ENST00000395719.7	4060	12	33	2344	33	0	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGCCCACTGAGTTCA	NA	NA	NA	NA	NA	NA	NA	NA	92221112	92202358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018
ONT_simulated_read_2509571	chr2	-	851	7	ISM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	11697	2219	11697	-2219	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGGGACCCCGCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	3502154	3492105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084
ONT_simulated_read_2510452	chr5	-	736	3	ISM	ENSMUSG00000045078.13	ENSMUST00000200607.5	3704	17	22234	95770	7699	-6627	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCAAAGAGAGAAGACCGG	NA	NA	NA	NA	NA	NA	NA	NA	143076501	143073344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_143073377_143075497_143075575_143075874
ONT_simulated_read_2511846	chr1	-	455	2	ISM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	189	10377	189	-10377	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGCTGCGTATGAGTATA	NA	NA	NA	NA	NA	NA	NA	NA	10108163	10105202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_10105389_10107894
ONT_simulated_read_251458	chr15	-	871	5	ISM	ENSMUSG00000063354.8	ENST00000276833.9	1215	7	712	0	712	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	918	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTCTATCCCATCCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	76498143	76496734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797
ONT_simulated_read_251467	chr10	+	2628	5	ISM	ENSMUSG00000034674.19	ENSMUST00000151390.8	3502	10	14579	83	14579	-83	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGACCAGGCTGGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	82480271	82486550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484411
ONT_simulated_read_2517271	chr14	+	1253	12	ISM	ENSMUSG00000071547.5	ENST00000459839.5	1614	13	3723	0	0	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCACTTTTATTGTCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	30856809	30860999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_30856881_30857294_30857351_30857450_30857545_30857642_30857772_30857874_30857936_30858021_30858125_30858224_30858327_30858552_30858635_30860080_30860168_30860288_30860430_30860565_30860631_30860737
ONT_simulated_read_2517639	chr2	-	505	2	ISM	ENSMUSG00000074825.5	ENSMUST00000132773.2	3424	3	1244	2675	392	-918	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGTCGTTGTGGCTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	126984118	126983366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_126983647_126983893
ONT_simulated_read_2517933	chrX	+	1619	6	ISM	ENSMUSG00000037369.18	ENST00000382899.9	5786	29	84875	21969	84875	-21969	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTCCGCCTCCAAGACCA	NA	NA	NA	NA	NA	NA	NA	NA	18113756	18124121	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_18113962_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074
ONT_simulated_read_2518055	chr9	+	904	6	FSM	ENSMUSG00000032540.17	ENST00000458276.7	1185	6	110	171	57	-171	multi-exon	FALSE	canonical	NA	NA	NA	NA	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGAGCAATCCCCACAGC	NA	NA	NA	NA	NA	NA	NA	NA	122180853	122208704	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_122180905_122194200_122194287_122196953_122197327_122204970_122205126_122206923_122207036_122208577
ONT_simulated_read_2518158	chr11	-	2089	9	ISM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	2400	813	2400	-813	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	215	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCCATCTCTTGGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	106676958	106671993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892
ONT_simulated_read_2518895	chr7	-	725	2	ISM	ENSMUSG00000048920.9	ENSMUST00000061390.9	2827	3	1628	2047	1628	-2047	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGCCGCTGGCCACCAGC	NA	NA	NA	NA	NA	NA	NA	NA	16549029	16545217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_16545902_16548988
ONT_simulated_read_2520725	chr10	-	2574	11	ISM	ENSMUSG00000019988.8	ENSMUST00000020163.7	3534	15	11131	484	11131	-484	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTCAACTGTGTACTTT	NA	NA	NA	NA	NA	NA	NA	NA	92547151	92521091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_92522158_92522581_92522649_92525496_92525654_92526489_92526647_92527695_92527899_92528749_92528798_92530841_92530971_92534031_92534228_92534587_92534790_92536581_92536812_92547032
ONT_simulated_read_2521425	chr14	-	1088	12	ISM	ENSMUSG00000004558.16	ENST00000554104.5	1816	14	361	663	361	-169	internal_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATATCTCTTAGAGATCT	NA	NA	NA	NA	NA	NA	NA	NA	52147892	52143401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771
ONT_simulated_read_252272	chr17	-	141	3	ISM	ENSMUSG00000024194.17	ENST00000488478.5	370	4	318	8	318	-8	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAGGGAAATCCCCCGTA	NA	NA	NA	NA	NA	NA	NA	NA	27157749	27157104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_27157151_27157545_27157592_27157700
ONT_simulated_read_252322	chr2	-	397	4	ISM	ENSMUSG00000026869.13	ENST00000373904.5	1389	9	3886	8173	3884	5304	internal_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGCTTATACCCATCACG	NA	NA	NA	NA	NA	NA	NA	NA	34757050	34750759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_34750787_34753468_34753579_34755993_34756108_34756904
ONT_simulated_read_2523932	chr17	-	561	1	FSM	ENSMUSG00000067189.6	ENSMUST00000172475.2	373	1	0	-188	0	188	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTATGAAAATGTGCACATG	NA	NA	NA	NA	NA	NA	NA	NA	38024815	38024254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_38024300_38024800
ONT_simulated_read_2526388	chr11	-	1364	1	ISM	ENSMUSG00000049287.6	ENSMUST00000054523.6	4021	3	5099	1908	4677	-1908	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTAGATTGATAGGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	59049466	59048102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_59048100_59049500
ONT_simulated_read_2531160	chr16	+	972	7	ISM	ENSMUSG00000022957.21	ENST00000381285.8	5513	38	170162	417	-4518	-342	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGAGCCGTAGCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	91696398	91708882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_91696561_91702174_91702388_91703645_91703768_91705290_91705374_91705653_91705738_91706092_91706267_91708748
ONT_simulated_read_2531673	chr5	+	1433	6	ISM	ENSMUSG00000029344.16	ENSMUST00000239473.2	1813	7	27189	319	-3911	-319	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCTCCAGGACAACACTAAG	NA	NA	NA	NA	NA	NA	NA	NA	112451761	112462902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ONT_simulated_read_2531829	chr1	-	748	3	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	46981	6183	42087	1662	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACCAGTTCACCTTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	180924788	180920885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_180921475_180922548_180922620_180924700
ONT_simulated_read_2531934	chr9	+	1425	11	ISM	ENSMUSG00000032212.11	ENSMUST00000049263.9	3691	21	28	12255	28	-12255	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATGAAGAAAGAAAATGATG	NA	NA	NA	NA	NA	NA	NA	NA	70450179	70487259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480738_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233
ONT_simulated_read_2532176	chr2	-	403	7	ISM	ENSMUSG00000026860.17	ENSMUST00000100215.11	1749	12	8897	1077	8897	-1075	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTCACCTACCACCACTG	NA	NA	NA	NA	NA	NA	NA	NA	30240355	30235897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299
ONT_simulated_read_2532743	chr2	-	1845	6	ISM	ENSMUSG00000038718.16	ENSMUST00000113132.9	2734	8	147403	486	147403	-220	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGTTTCCCTTCACAAA	NA	NA	NA	NA	NA	NA	NA	NA	34114647	34061954	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_34062986_34065876_34065967_34068188_34068355_34094791_34094928_34103263_34103455_34114416
ONT_simulated_read_25332	chr4	-	1581	12	ISM	ENSMUSG00000028906.18	ENST00000646189.1	3870	15	71516	3023	3637	-800	internal_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACGCGGCTGCTGTGACT	NA	NA	NA	NA	NA	NA	NA	NA	131731105	131682838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_131682890_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895
ONT_simulated_read_2534935	chr13	-	325	1	FSM	ENSMUSG00000060639.6	ENSMUST00000102977.4	727	1	0	402	0	-402	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTCTGTACGGGTTCGGC	NA	NA	NA	NA	NA	NA	NA	NA	22225532	22225207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_22225200_22225500
ONT_simulated_read_2535939	chr15	-	207	1	ISM	ENSMUSG00000051518.9	ENSMUST00000052499.9	838	4	3189	305	3189	-305	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCCCTGCAGTGCTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	80145327	80145120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_80145100_80145300
ONT_simulated_read_2536472	chr2	-	634	4	ISM	ENSMUSG00000027423.16	ENSMUST00000028909.5	2419	13	15759	810	15759	-810	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGAATTACTAAGAAATGG	NA	NA	NA	NA	NA	NA	NA	NA	144096733	144092852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645
ONT_simulated_read_2537774	chr5	-	1775	7	ISM	ENSMUSG00000042594.17	ENSMUST00000122426.8	2777	9	7032	656	7032	-376	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGCCAGAGCTAGCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	121967135	121955728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_121956157_121956278_121956451_121956527_121956743_121956822_121956918_121957001_121957094_121957169_121957272_121966464
ONT_simulated_read_254014	chr19	-	896	7	ISM	ENSMUSG00000036748.17	ENSMUST00000235977.2	1050	9	6582	0	6552	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	NA	NA	NA	NA	NA	NA	NA	NA	46320495	46318978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320080_46320195_46320258_46320351
ONT_simulated_read_254478	chr5	-	934	7	ISM	ENSMUSG00000000560.10	ENST00000507069.5	1536	10	2540	11654	2540	-11654	internal_fragment	FALSE	canonical	NA	NA	NA	NA	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGACGGGAAGAGTGTAGT	NA	NA	NA	NA	NA	NA	NA	NA	71249406	71130797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_71130971_71163449_71163603_71165265_71165410_71170043_71170127_71171758_71171980_71192072_71192141_71249314
ONT_simulated_read_2546423	chr16	+	598	7	ISM	ENSMUSG00000022681.16	ENSMUST00000023362.15	1175	10	8197	162	8123	-159	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	133	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATCTCCTCTCCAGGGA	NA	NA	NA	NA	NA	NA	NA	NA	13645311	13653153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ONT_simulated_read_2548761	chr13	-	1799	1	ISM	ENSMUSG00000032621.9	ENSMUST00000210489.2	6330	10	20885	2551	20885	-287	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTGTGTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	103880205	103878406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_103878400_103880200
ONT_simulated_read_2549221	chr7	-	941	6	ISM	ENSMUSG00000053291.16	ENSMUST00000093040.13	1192	8	3003	0	3003	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGGCCTCTGTCATTCTG	NA	NA	NA	NA	NA	NA	NA	NA	26875318	26867848	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203
ONT_simulated_read_2549249	chr7	-	493	4	ISM	ENSMUSG00000054662.9	ENST00000332826.7	1353	12	3836	0	3836	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGGACCTTCACAGATGAGT	NA	NA	NA	NA	NA	NA	NA	NA	140684462	140683017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_140683148_140683904_140684058_140684154_140684298_140684395
ONT_simulated_read_2549747	chr11	-	1017	4	ISM	ENSMUSG00000052298.13	ENSMUST00000064104.13	3069	6	47148	1759	47148	-1759	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCCAGACATCCATCCT	NA	NA	NA	NA	NA	NA	NA	NA	54631353	54610040	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063
ONT_simulated_read_2553665	chr17	-	1097	3	ISM	ENSMUSG00000002504.16	ENSMUST00000019684.13	1717	6	3240	112	3207	-107	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTCCTACCCTCCACC	NA	NA	NA	NA	NA	NA	NA	NA	24860724	24858371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24859364_24859568_24859632_24860682
ONT_simulated_read_2557327	chr13	+	802	5	ISM	ENSMUSG00000021712.16	ENST00000274327.11	1807	12	-20	14684	0	-13873	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTCAGCACATTGAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	104315346	104324683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104324568
ONT_simulated_read_255792	chr11	+	2032	12	ISM	ENSMUSG00000020290.15	ENST00000678877.1	3894	21	22812	649	22812	170	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATTTGAAAATAGACTTGT	NA	NA	NA	NA	NA	NA	NA	NA	23234643	23246403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
ONT_simulated_read_2558464	chr1	+	1031	9	NIC	ENSMUSG00000026418.17	novel	1105	10	NA	NA	0	-51	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGTATTCACAAGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	135727158	135738676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_+_135727235_135727710_135727759_135730331_135730362_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
ONT_simulated_read_2558553	chr2	-	775	7	ISM	ENSMUSG00000002107.19	ENSMUST00000142941.8	2338	12	113671	3698	113671	-3604	internal_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGAGTTTGGAGACCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	6612753	6554748	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_6554787_6558595_6558794_6565481_6565602_6590784_6590920_6604844_6604909_6608834_6608994_6612692
ONT_simulated_read_2558837	chr12	-	1583	2	ISM	ENSMUSG00000020601.9	ENSMUST00000020922.8	4198	3	192	18042	192	-16451	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATTGCCACGATGGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	15866594	15859769	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_15859990_15865231
ONT_simulated_read_2558840	chr6	-	331	2	ISM	ENSMUSG00000014550.15	ENSMUST00000014694.11	5334	12	3040	20441	3040	-20441	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTGTTGAAACGAGAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	92188866	92184133	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_92184167_92188568
ONT_simulated_read_2563154	chr17	-	1214	1	ISM	ENSMUSG00000033972.10	ENSMUST00000115535.3	2784	6	21319	879	21319	-879	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATGTAATGAATTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	22559062	22557848	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_22557800_22559100
ONT_simulated_read_2564204	chrX	+	415	3	ISM	ENSMUSG00000031403.15	ENST00000620277.4	1550	13	4116	4515	4116	-4515	internal_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGGGGAAGCTATCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	74144553	74148043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_74144727_74146027_74146172_74147945
ONT_simulated_read_256475	chr11	-	666	1	ISM	ENSMUSG00000020393.17	ENSMUST00000020662.15	4856	9	66437	2904	66437	-2904	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTCATCTTTCTAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	5145121	5144455	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_5144500_5145100
ONT_simulated_read_2565209	chr3	+	974	3	ISM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	1629	4503	1629	-4503	internal_fragment	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTGTGTCCCACCATACA	NA	NA	NA	NA	NA	NA	NA	NA	122069665	122074417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_122070460_122072394_122072534_122074376
ONT_simulated_read_2566526	chr15	-	347	3	ISM	ENSMUSG00000009733.10	ENST00000549867.5	1248	11	34009	0	33759	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTGACTCGGTACAGTC	NA	NA	NA	NA	NA	NA	NA	NA	100415909	100409575	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_100409719_100410089_100410215_100415830
ONT_simulated_read_2567128	chr17	+	801	6	ISM	ENSMUSG00000069135.12	ENSMUST00000024636.15	3077	12	16707	1681	16700	-1502	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGGTTTAACTGCATGG	NA	NA	NA	NA	NA	NA	NA	NA	8401078	8413626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
ONT_simulated_read_256771	chr7	-	1057	7	ISM	ENSMUSG00000030557.18	ENST00000557785.5	2842	11	22931	17819	22931	-17352	internal_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTGACCCACTTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	66999658	66901404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_66901593_66914612_66914673_66915690_66915911_66918016_66918149_66945122_66945327_66966539_66966731_66999596
ONT_simulated_read_2568719	chr10	+	694	6	ISM	ENSMUSG00000035206.11	ENST00000614794.4	902	7	925	0	925	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCCAGGCTCTTCTGACA	NA	NA	NA	NA	NA	NA	NA	NA	80698102	80700001	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_80698197_80698532_80698623_80698788_80698929_80699010_80699154_80699288_80699386_80699871
ONT_simulated_read_2568785	chr11	-	588	3	ISM	ENSMUSG00000059923.14	ENSMUST00000106497.8	2683	5	49641	1614	49414	84	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACGGGTGACCCTCTCA	NA	NA	NA	NA	NA	NA	NA	NA	115540719	115536484	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115536781_115537535_115537705_115540596
ONT_simulated_read_2571208	chr4	-	1300	1	ISM	ENSMUSG00000063077.16	ENSMUST00000030806.6	6991	21	69143	3447	69026	-3447	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGCCTTACTGTAATTAT	NA	NA	NA	NA	NA	NA	NA	NA	149322937	149321637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_149321600_149322900
ONT_simulated_read_257275	chr14	+	1843	20	ISM	ENSMUSG00000022211.10	ENSMUST00000076236.7	4602	40	3271	7890	3271	-7881	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACGTGGCAGAACGTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	55731820	55737835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_55731879_55732109_55732186_55732261_55732351_55732860_55732956_55733180_55733268_55733437_55733548_55733681_55733760_55734243_55734321_55734397_55734503_55734594_55734665_55735120_55735203_55735302_55735400_55735544_55735600_55735675_55735849_55736058_55736128_55736304_55736399_55736499_55736599_55736914_55737044_55737208_55737323_55737749
ONT_simulated_read_2573051	chr5	-	972	5	ISM	ENSMUSG00000029161.8	ENST00000402394.6	921	7	9565	171	9565	-171	internal_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGAAGCATTGAGAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	31093320	31090718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_31091333_31091503_31091626_31091722_31091794_31091886_31091953_31093221
ONT_simulated_read_2574408	chr2	-	604	3	ISM	ENSMUSG00000026922.14	ENST00000371694.7	950	5	7775	-1	7775	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1393	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAACTTCCCACCTCAAGC	NA	NA	NA	NA	NA	NA	NA	NA	26486479	26483420	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_26483775_26484791_26484865_26486302
ONT_simulated_read_2577738	chr2	-	973	1	ISM	ENSMUSG00000027272.6	ENSMUST00000028728.6	7768	47	107969	1505	107969	-1505	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGAATGGTCATAAGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	120693227	120692254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_120692300_120693200
ONT_simulated_read_258235	chr10	+	569	4	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	4420	464	4420	-464	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	742	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAAGAGGGCATCCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	81016884	81017868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_81016992_81017061_81017245_81017326_81017460_81017722
ONT_simulated_read_2587455	chr4	+	91	2	ISM	ENSMUSG00000028524.22	ENST00000682938.1	2444	18	230	117385	0	-76120	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACTGACTCTACGTATGT	NA	NA	NA	NA	NA	NA	NA	NA	102617721	102710129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_102617763_102710079
ONT_simulated_read_2587525	chr7	+	146	3	ISM	ENSMUSG00000042918.18	ENST00000356751.8	1511	8	2827	238	2827	-238	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTCTCCCTCCCCGGACT	NA	NA	NA	NA	NA	NA	NA	NA	45293807	45294175	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_45293853_45293942_45293998_45294129
ONT_simulated_read_2590931	chr16	+	527	4	ISM	ENSMUSG00000022812.15	ENSMUST00000023507.13	8303	11	119037	5395	117750	20	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTTCATTTTAGTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	38028399	38061051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_38028453_38040333_38040521_38049039_38049139_38060863
ONT_simulated_read_2593443	chrX	+	881	8	ISM	ENSMUSG00000031284.17	ENST00000519681.5	2516	17	27592	47857	0	-47857	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGAAGAAATATACGAGA	NA	NA	NA	NA	NA	NA	NA	NA	142476281	142526957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_142476485_142492643_142492745_142495273_142495337_142498131_142498286_142499106_142499145_142516067_142516200_142518252_142518419_142526933
ONT_simulated_read_2594128	chr12	-	689	5	ISM	ENSMUSG00000021068.18	ENST00000382043.8	4069	27	24576	38333	24574	-37138	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAGAACAGTCAGGAGATT	NA	NA	NA	NA	NA	NA	NA	NA	70125054	70102671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_70102814_70103425_70103573_70107924_70108116_70109462_70109503_70124885
ONT_simulated_read_25951	chr8	+	1426	11	ISM	ENSMUSG00000031756.6	ENSMUST00000034205.5	1768	12	587	299	0	-236	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTAGGCACCTCCTGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	117649065	117667943	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117662991_117663900_117664014_117667182_117667310_117667573
ONT_simulated_read_2597761	chr9	-	433	1	ISM	ENSMUSG00000036986.17	ENSMUST00000085673.11	4481	9	29766	1512	27408	273	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCTCAAGGGCCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	58127303	58126870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_58126900_58127300
ONT_simulated_read_2599299	chr7	+	1417	12	ISM	ENSMUSG00000030769.16	ENST00000424767.6	2108	15	20819	4071	0	-4071	internal_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGATGACCGGCCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	122834842	122868333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_122834978_122837346_122837419_122838591_122838697_122839961_122840022_122849293_122849400_122851635_122851717_122857576_122857783_122859729_122859866_122864411_122864520_122864809_122864961_122866971_122867141_122868245
ONT_simulated_read_2601218	chr1	+	1042	8	FSM	ENSMUSG00000005763.16	ENST00000392122.3	1085	8	90	-47	0	47	multi-exon	FALSE	canonical	NA	NA	NA	NA	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGAGGCAGGTACAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	165616333	165689124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_165616456_165682734_165682839_165683968_165684026_165684984_165685066_165686014_165686048_165686787_165686845_165687357_165687394_165688572
ONT_simulated_read_2602221	chr14	-	1294	10	ISM	ENSMUSG00000033644.6	ENSMUST00000048129.6	4916	23	2374	29649	12	-28002	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCGAATCGATGATGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	70664169	70639574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_70639672_70646359_70646474_70646753_70646835_70647830_70647956_70648582_70648701_70658088_70658200_70658897_70659105_70660076_70660216_70660343_70660432_70663955
ONT_simulated_read_2606105	chr15	-	1688	1	FSM	ENSMUSG00000048218.7	ENSMUST00000229890.2	2998	1	527	783	527	-764	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGACGGGGTGAAAACCC	NA	NA	NA	NA	NA	NA	NA	NA	97144476	97142788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_97142800_97144500
ONT_simulated_read_2606119	chr17	-	596	2	ISM	ENSMUSG00000037196.7	ENSMUST00000041463.7	1475	5	263676	0	263358	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTCACCCTTTGCCACAC	NA	NA	NA	NA	NA	NA	NA	NA	10795522	10621940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_10622408_10795393
ONT_simulated_read_2607522	chr2	-	969	5	ISM	ENSMUSG00000027316.16	ENSMUST00000028787.12	909	6	951	-160	951	160	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATTTTCTTCCCCATCCT	NA	NA	NA	NA	NA	NA	NA	NA	130883651	130881935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_130882246_130882318_130882396_130882935_130883071_130883151_130883262_130883314
ONT_simulated_read_2607618	chr11	-	273	3	ISM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	10740	8953	10740	-8953	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCGGAACTGTCTGACACA	NA	NA	NA	NA	NA	NA	NA	NA	107069467	107066441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_107066574_107067608_107067684_107069401
ONT_simulated_read_2608250	chr17	-	2189	17	ISM	ENSMUSG00000052752.16	ENSMUST00000088464.12	2504	20	4378	88	4378	-88	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTTTTTACTCACCTTT	NA	NA	NA	NA	NA	NA	NA	NA	24733804	24727911	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686
ONT_simulated_read_2608934	chr3	-	609	1	ISM	ENSMUSG00000027905.16	ENSMUST00000090680.11	2905	11	7900	796	7900	-796	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGACAGCGATTCTTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	105586990	105586381	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_105586400_105587000
ONT_simulated_read_2610199	chr7	-	1156	6	NIC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	0	0	intron_retention	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTACTCTAACTTGCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	141937278	141930318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_141930476_141930569_141930669_141930762_141931193_141934502_141934730_141936328_141936448_141937154
ONT_simulated_read_2612262	chr2	-	735	1	ISM	ENSMUSG00000051149.16	ENSMUST00000057793.11	4917	5	21779	3423	21779	-3423	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAATGTTCACCTGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	168027063	168026328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_168026300_168027100
ONT_simulated_read_261228	chr1	+	514	1	NIC	ENSMUSG00000026270.12	novel	2902	12	NA	NA	2517	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCCGGACCTGCTGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	92868180	92868694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_+_92868200_92868700
ONT_simulated_read_2614043	chr9	-	864	1	ISM	ENSMUSG00000050627.14	ENSMUST00000146623.8	4391	8	31485	2298	6574	-1201	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGGGGGCCACTGTCACT	NA	NA	NA	NA	NA	NA	NA	NA	114731570	114730706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_114730700_114731600
ONT_simulated_read_261615	chr4	+	481	6	ISM	ENSMUSG00000028552.14	ENSMUST00000132165.9	2295	23	28739	63327	28739	-63327	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATATGTGTCTGGACTGGA	NA	NA	NA	NA	NA	NA	NA	NA	109166347	109179335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_109166418_109169500_109169567_109170074_109170201_109173041_109173102_109178324_109178415_109179266
ONT_simulated_read_26166	chr14	-	476	1	ISM	ENSMUSG00000034248.8	ENSMUST00000037064.5	4174	4	39767	3022	39767	-3022	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAGAGGCAGCTGGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	69482794	69482318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_69482300_69482800
ONT_simulated_read_261850	chr14	-	690	1	ISM	ENSMUSG00000021929.10	ENSMUST00000022496.9	4069	17	72145	1829	72145	-1829	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATTGATGTGTTTATTA	NA	NA	NA	NA	NA	NA	NA	NA	61605178	61604488	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_61604500_61605200
ONT_simulated_read_2618826	chr1	+	1723	1	ISM	ENSMUSG00000026131.21	ENST00000370765.11	8776	24	18110	3727	18096	-3727	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGCACCTTAACCTAAAG	NA	NA	NA	NA	NA	NA	NA	NA	34217506	34219229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_34217500_34219200
ONT_simulated_read_2619877	chr1	-	1076	8	ISM	ENSMUSG00000026632.18	ENSMUST00000110893.10	1242	10	2747	0	2657	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGATTTGTCTTGGACA	NA	NA	NA	NA	NA	NA	NA	NA	190792382	190778022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_190778518_190781478_190781560_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309
ONT_simulated_read_261989	chr2	-	1787	12	ISM	ENSMUSG00000027620.17	ENST00000528062.7	2369	16	12568	0	11989	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTGTCTTGAGATTCC	NA	NA	NA	NA	NA	NA	NA	NA	156009511	155989454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457
ONT_simulated_read_2620367	chr1	-	1074	1	ISM	ENSMUSG00000037395.17	ENSMUST00000110849.10	3791	11	36878	1510	36795	731	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGACTTAAAATTTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	191785429	191784355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_191784400_191785400
ONT_simulated_read_2622136	chr11	+	1575	9	ISM	ENSMUSG00000036644.16	ENSMUST00000093138.13	4407	21	13787	15110	13744	11823	internal_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGAGGGCATCAAGGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	50036009	50047747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042145_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571
ONT_simulated_read_2625580	chr11	+	355	3	ISM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	2417	6987	2417	-6987	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCTTTACAACCATCACC	NA	NA	NA	NA	NA	NA	NA	NA	72334597	72335607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_72334735_72334828_72334947_72335507
ONT_simulated_read_2626840	chr12	-	980	10	ISM	ENSMUSG00000020974.7	ENSMUST00000021359.7	1706	19	16763	0	16747	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTACACATTGTAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	69258206	69248546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_69248657_69249680_69249749_69250864_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595_69256769_69258146
ONT_simulated_read_2627645	chr11	-	1566	1	ISM	ENSMUSG00000020120.16	ENSMUST00000102881.10	4101	10	34555	1376	34555	-1118	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTATATGGAATAGAGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	16924147	16922581	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_16922600_16924100
ONT_simulated_read_2627859	chr5	-	691	1	ISM	ENSMUSG00000079555.3	ENSMUST00000060049.8	2073	5	1288	13669	1288	-13669	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAGCGACGACTGGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	34325583	34324892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_34324900_34325600
ONT_simulated_read_2628387	chr15	+	491	5	ISM	ENSMUSG00000022255.17	ENST00000519934.5	2171	11	247	24986	247	-24986	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCTGGAAAAGGAGATTC	NA	NA	NA	NA	NA	NA	NA	NA	34083467	34116491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456
ONT_simulated_read_262917	chr10	-	2377	17	ISM	ENSMUSG00000020048.14	ENSMUST00000020238.14	2825	18	61	887	61	-821	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCTGAAGACACCTCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	86541312	86527590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
ONT_simulated_read_2629903	chrX	+	540	5	ISM	ENSMUSG00000031138.5	ENST00000394090.2	1302	7	0	10370	0	-10370	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATTCTTAATAACGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	59044823	59064431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_59044912_59049196_59049361_59049767_59049793_59061521_59061651_59064297
ONT_simulated_read_2631889	chr19	+	690	5	ISM	ENSMUSG00000025068.9	ENSMUST00000026050.8	1182	6	0	1306	0	-1306	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACATTTGAATATTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	47843408	47851923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_47843562_47843653_47843763_47846297_47846521_47847870_47847970_47851817
ONT_simulated_read_2634340	chr13	-	160	1	FSM	ENSMUSG00000096842.2	ENSMUST00000179668.2	78	1	0	-82	0	82	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCAGTAATGAGTCTTAG	NA	NA	NA	NA	NA	NA	NA	NA	111730145	111729985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_111730000_111730100
ONT_simulated_read_2634523	chr16	+	1278	12	FSM	ENSMUSG00000039427.15	ENST00000684335.1	1296	12	18	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCGCTCACTCACAGAT	NA	NA	NA	NA	NA	NA	NA	NA	5051501	5062418	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_5051722_5052829_5052908_5053026_5053131_5054183_5054333_5056508_5056599_5056919_5057031_5057769_5057892_5058007_5058047_5058322_5058383_5060352_5060468_5061551_5061628_5062304
ONT_simulated_read_2634709	chr15	-	196	1	ISM	ENSMUSG00000101026.2	ENSMUST00000191407.2	1494	2	6530	1225	3124	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAGCTGCCTAGTGAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	74644178	74643982	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_74644000_74644200
ONT_simulated_read_2636981	chr6	-	349	3	ISM	ENSMUSG00000064177.9	ENSMUST00000204163.3	447	4	0	881	0	0	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	813	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGTCAATCTGAAATGGA	NA	NA	NA	NA	NA	NA	NA	NA	113696408	113694013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113694123_113696070_113696185_113696282
ONT_simulated_read_263699	chr18	-	330	3	ISM	ENSMUSG00000024352.13	ENSMUST00000025209.12	702	6	1833	0	1775	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAATGCCCAACCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	35793406	35789741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_35789898_35790001_35790105_35793335
ONT_simulated_read_2645961	chr9	-	761	2	ISM	ENSMUSG00000032475.16	ENSMUST00000112874.4	1513	3	8912	595	8912	-595	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTGCATTGGGCAGCGGA	NA	NA	NA	NA	NA	NA	NA	NA	100379997	100377650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_100377725_100379310
ONT_simulated_read_2646601	chr2	-	1354	8	ISM	ENSMUSG00000036067.13	ENSMUST00000045702.6	2138	10	1890	440	1185	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	355	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCACCTTGGGACAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	26916120	26911814	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_26912082_26912730_26912877_26913099_26913262_26913546_26913656_26914194_26914348_26914596_26914806_26915234_26915335_26915912
ONT_simulated_read_2649381	chr7	+	1295	9	ISM	ENSMUSG00000039018.16	ENSMUST00000036977.9	1595	11	2657	0	2657	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCGTTTTCATTGTGCAC	NA	NA	NA	NA	NA	NA	NA	NA	139720133	139730699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139727165_139727248_139729660_139729774_139730067
ONT_simulated_read_2650063	chr5	+	1664	19	ISM	ENSMUSG00000037426.19	ENST00000647438.1	1727	20	7	78246	0	-38128	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGGGGTGGGGGTGAGGG	NA	NA	NA	NA	NA	NA	NA	NA	33021930	33075516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268
ONT_simulated_read_2651372	chr9	+	1136	8	ISM	ENSMUSG00000032192.10	ENSMUST00000215875.2	2105	11	18663	552	18663	-158	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTGTGGCTTCTAGAACC	NA	NA	NA	NA	NA	NA	NA	NA	75240080	75252601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_75240168_75241450_75241584_75242932_75243077_75244552_75244645_75247469_75247519_75250789_75250887_75251762_75251930_75252234
ONT_simulated_read_2651791	chr13	+	2312	1	ISM	ENSMUSG00000021413.10	ENSMUST00000077853.5	7844	15	27807	644	27807	-644	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTGGGATACAAAATACA	NA	NA	NA	NA	NA	NA	NA	NA	35087091	35089403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_35087100_35089400
ONT_simulated_read_2651897	chr5	+	799	5	ISM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	0	4045	0	-3863	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	763	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGAGCTAAAGGTGAGGGA	NA	NA	NA	NA	NA	NA	NA	NA	135807333	135815200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086
ONT_simulated_read_2653646	chr1	-	345	1	ISM	ENSMUSG00000026095.16	ENSMUST00000027264.10	2442	6	7791	0	7791	0	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGTTAATTTTTACCT	NA	NA	NA	NA	NA	NA	NA	NA	53384120	53383775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_53383800_53384100
ONT_simulated_read_2653925	chr8	+	792	2	FSM	ENSMUSG00000031669.11	ENST00000328514.11	845	2	-41	94	0	-94	multi-exon	TRUE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGAGTCATCTCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	96360181	96370296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_96360412_96369734
ONT_simulated_read_2662192	chr6	-	1419	2	ISM	ENSMUSG00000037788.15	ENSMUST00000114297.5	2919	5	62587	1131	62564	-1131	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGGAGTTAACAGTATGGA	NA	NA	NA	NA	NA	NA	NA	NA	57739557	57730380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_57731662_57739419
ONT_simulated_read_2662926	chr2	+	1268	9	ISM	ENSMUSG00000027018.12	ENSMUST00000028408.3	1576	11	19728	167	19728	-167	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACTGTCTAGAGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	71239331	71271799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
ONT_simulated_read_2666054	chr12	-	793	6	ISM	ENSMUSG00000021190.15	ENSMUST00000110020.8	1835	13	23512	386	23512	-372	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATACTGCCCGCCCACC	NA	NA	NA	NA	NA	NA	NA	NA	102366516	102360728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396
ONT_simulated_read_2670767	chr1	+	904	10	ISM	ENSMUSG00000041757.18	ENST00000637508.1	5477	25	14212	16345	14212	-15917	internal_fragment	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTGCCAGCCTTACCAG	NA	NA	NA	NA	NA	NA	NA	NA	133201991	133213037	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_133202113_133202530_133202618_133203549_133203604_133207110_133207192_133208076_133208146_133209520_133209602_133209854_133210005_133211008_133211105_133212617_133212730_133212984
ONT_simulated_read_2671691	chr3	-	886	5	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	539	8893	539	-8893	internal_fragment	FALSE	canonical	NA	NA	NA	NA	606	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGTTTCTGTGGCGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	105866876	105858906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
ONT_simulated_read_2672047	chr11	+	1386	9	ISM	ENSMUSG00000034708.13	ENSMUST00000049460.12	2331	13	3610	374	-6	190	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTTGAGGGATCCGGT	NA	NA	NA	NA	NA	NA	NA	NA	102324757	102327259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
ONT_simulated_read_2675288	chr2	+	614	7	ISM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	16556	37110	16556	-37110	internal_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTAAGGTTGTTCAGTCCT	NA	NA	NA	NA	NA	NA	NA	NA	146871471	146882810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735
ONT_simulated_read_2675697	chr16	+	2306	18	ISM	ENSMUSG00000022770.18	ENSMUST00000115196.8	3418	23	37421	60	36988	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	107	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTAGCTCTCAAGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	31610588	31691019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31666453_31666488_31672660_31672703_31673470_31673507_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ONT_simulated_read_2677653	chr1	-	3119	9	ISM	ENSMUSG00000048874.16	ENSMUST00000088310.10	7561	15	43065	1608	43065	-1608	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGCAGACAAGAAACCGG	NA	NA	NA	NA	NA	NA	NA	NA	30859272	30843030	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_30845024_30845249_30845446_30847803_30847894_30849763_30849912_30850852_30851049_30852097_30852234_30853040_30853173_30855548_30855666_30859161
ONT_simulated_read_2679505	chr5	-	2021	1	ISM	ENSMUSG00000029207.17	ENSMUST00000162366.8	6540	16	316077	1936	315982	1227	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGCAGAGAAGCTGGAATT	NA	NA	NA	NA	NA	NA	NA	NA	66460024	66458003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_66458000_66460000
ONT_simulated_read_2679569	chr18	-	2384	1	Antisense	novelGene_ENSMUSG00000046387.6_AS_novelGene_ENSMUSG00000048347.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGACCAGCCTGTGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	37622522	37620138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr18_-_37620100_37622500
ONT_simulated_read_2681353	chr4	-	400	4	ISM	ENSMUSG00000028651.13	ENST00000470213.5	572	7	3034	-2	3034	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGATTCTGCTGTGGCG	NA	NA	NA	NA	NA	NA	NA	NA	123030691	123024157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_123024348_123028847_123028949_123029388_123029471_123030664
ONT_simulated_read_2682863	chr18	+	3261	17	ISM	ENSMUSG00000040560.11	ENST00000357574.7	6273	27	18849	2433	18849	-2433	internal_fragment	FALSE	canonical	NA	NA	NA	NA	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCTCATGGCCCATGATG	NA	NA	NA	NA	NA	NA	NA	NA	63872134	64120384	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_63872425_63873097_63873319_63888106_63888303_63893641_63893857_63910598_63911369_63912939_63913029_63927295_63927415_63929228_63929353_63958195_63958310_63998355_63998578_64037100_64037288_64057882_64058001_64059649_64059800_64060336_64060420_64068919_64069020_64112390_64112496_64120226
ONT_simulated_read_2684357	chr7	+	456	4	ISM	ENSMUSG00000030588.13	ENST00000337679.12	1011	8	-34	2766	0	-2766	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCCCCCGCTTCGACATC	NA	NA	NA	NA	NA	NA	NA	NA	28937777	28944053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_28937862_28943494_28943728_28943823_28943929_28944019
ONT_simulated_read_2684692	chr8	+	516	1	FSM	ENSMUSG00000110069.2	ENSMUST00000211476.2	246	1	0	-270	0	270	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGTGTACCTTTTATAAT	NA	NA	NA	NA	NA	NA	NA	NA	103261276	103261792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_103261300_103261800
ONT_simulated_read_2688523	chr14	-	506	1	ISM	ENSMUSG00000007589.10	ENSMUST00000007733.8	2956	9	2445	1004	2370	-1004	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTCCCTGGATCCTACT	NA	NA	NA	NA	NA	NA	NA	NA	55916832	55916326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55916300_55916800
ONT_simulated_read_268917	chr4	-	792	6	ISM	ENSMUSG00000033379.14	ENSMUST00000150204.8	935	7	960	-7	960	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGCTTCTGTTGGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	117743557	117741522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472
ONT_simulated_read_2690016	chr7	-	830	4	ISM	ENSMUSG00000030960.17	ENSMUST00000033257.15	1107	6	2000	0	1943	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTTTTGGTTTTTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	132452402	132429185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_132429612_132433088_132433306_132438828_132438937_132452323
ONT_simulated_read_2690236	chr18	-	131	2	ISM	ENSMUSG00000041923.16	ENSMUST00000081423.13	3309	11	125983	130151	125983	-128997	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGCACAGCTCAGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	23045730	22956588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_22956628_23045638
ONT_simulated_read_2690492	chr9	-	385	3	ISM	ENSMUSG00000032436.18	ENSMUST00000084867.9	874	4	18439	325	18439	-325	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGTCTGCTGCAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	114592461	114586231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_114586360_114587872_114587955_114592286
ONT_simulated_read_2693809	chr1	-	373	1	NIC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	53033	-247	mono-exon	FALSE	NA	NA	NA	NA	NA	196	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCTTTTCTATATTGAG	NA	NA	NA	NA	NA	NA	NA	NA	128292063	128291690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_128291700_128292100
ONT_simulated_read_2696354	chr12	-	915	7	ISM	ENSMUSG00000037149.11	ENST00000621973.2	2280	24	23674	-122	23674	122	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAAACCCAGACTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	13275464	13269185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399
ONT_simulated_read_2696702	chr6	-	945	7	ISM	ENSMUSG00000004266.16	ENSMUST00000112484.10	2219	16	7795	0	7795	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGCCCCTTGTATC	NA	NA	NA	NA	NA	NA	NA	NA	124702322	124697669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124697872_124698042_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189
ONT_simulated_read_2697066	chr7	+	716	8	ISM	ENSMUSG00000030584.15	ENST00000414789.5	1735	12	485	2545	485	-2545	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTGGGTGTCCCGAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	29008937	29013776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013563_29013615_29013707
ONT_simulated_read_2698929	chr6	-	786	9	ISM	ENSMUSG00000035245.13	ENST00000540955.5	1331	12	1455	1843	1455	-1843	internal_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGAGCTGGCCTTACC	NA	NA	NA	NA	NA	NA	NA	NA	97120976	97090864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_97090924_97092961_97093024_97095841_97095911_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900
ONT_simulated_read_270436	chr13	-	1326	7	ISM	ENSMUSG00000021519.12	ENSMUST00000021991.11	1479	8	2864	0	-18	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTTTCAATATTA	NA	NA	NA	NA	NA	NA	NA	NA	67078288	67060181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948
ONT_simulated_read_2707324	chr6	-	1116	10	ISM	ENSMUSG00000040797.17	ENST00000382841.2	2400	12	33500	56	33500	-56	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCATTTTACCAATTTCA	NA	NA	NA	NA	NA	NA	NA	NA	121387699	121356840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_121356869_121356953_121357004_121358607_121358701_121360873_121361036_121361160_121361261_121363531_121363658_121364692_121364833_121366425_121366593_121366958_121367082_121387572
ONT_simulated_read_270864	chr11	-	1421	7	ISM	ENSMUSG00000014606.15	ENSMUST00000014750.15	1711	8	829	0	742	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGTAAAGTCGTAACT	NA	NA	NA	NA	NA	NA	NA	NA	70537055	70535021	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901
ONT_simulated_read_2709196	chr15	-	1908	1	ISM	ENSMUSG00000009035.16	ENSMUST00000074991.10	3627	9	40718	260	40068	-240	mono-exon	FALSE	NA	NA	NA	NA	NA	271	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTATCTTGTCTCATTTA	NA	NA	NA	NA	NA	NA	NA	NA	79247051	79245143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79245100_79247100
ONT_simulated_read_271091	chr3	+	1467	8	ISM	ENSMUSG00000015714.12	ENSMUST00000015858.12	2216	11	5856	197	5856	-197	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGTGGAGTAGAAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	95228250	95230713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_95228372_95228500_95228559_95228646_95228698_95228885_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
ONT_simulated_read_271101	chr2	+	639	6	ISM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	0	51459	0	-51459	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCCTTCGCTATTACAT	NA	NA	NA	NA	NA	NA	NA	NA	146854915	146868461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434
ONT_simulated_read_27147	chr11	-	483	2	ISM	ENSMUSG00000034201.14	ENSMUST00000056649.13	2847	7	247	3868	197	-3738	internal_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGCTCTGGCTGCTGCCCG	NA	NA	NA	NA	NA	NA	NA	NA	5015080	5014239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_5014479_5014836
ONT_simulated_read_2715003	chrX	-	1577	2	ISM	ENSMUSG00000031434.16	ENSMUST00000033811.14	4412	16	47030	864	47030	-592	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTCTTAATCGGTGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	138725373	138723244	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_138724163_138724714
ONT_simulated_read_2716550	chr4	+	753	8	ISM	ENSMUSG00000073792.12	ENSMUST00000097961.9	3079	15	3487	18898	3487	-18898	internal_fragment	FALSE	non_canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGGAGCATGCCCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	99607388	99632799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726
ONT_simulated_read_2716861	chr11	+	296	1	FSM	ENSMUSG00000045176.4	ENSMUST00000051888.4	1862	1	0	1566	0	-1566	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGAGCTGGACACTTGGG	NA	NA	NA	NA	NA	NA	NA	NA	68950542	68950838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_68950500_68950800
ONT_simulated_read_2717296	chr13	+	1256	8	ISM	ENSMUSG00000021596.17	ENST00000429576.6	2886	19	183497	349	183497	-349	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACATCACGACTTCCACT	NA	NA	NA	NA	NA	NA	NA	NA	76973325	77178586	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_76973427_76973841_76973917_76975800_76975921_77073590_77073645_77168870_77168981_77172901_77173012_77176740_77176839_77177998
ONT_simulated_read_2718090	chr4	+	356	1	ISM	ENSMUSG00000065990.13	ENSMUST00000084097.12	1159	4	0	1424	0	-1325	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGAGCTCGCTTGGCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	155915807	155916163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155915800_155916200
ONT_simulated_read_2718636	chr3	-	1452	6	ISM	ENSMUSG00000027993.17	ENSMUST00000065380.13	4296	12	20597	8068	20597	0	internal_fragment	TRUE	canonical	NA	NA	NA	NA	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAGTTGTAAATAATGTAC	NA	NA	NA	NA	NA	NA	NA	NA	84099548	84078711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_84078838_84080071_84080241_84084938_84085107_84085381_84085486_84097819_84098544_84099387
ONT_simulated_read_2719478	chr6	-	398	2	ISM	ENSMUSG00000004446.13	ENSMUST00000004560.12	2189	6	21022	1254	21022	-1254	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTACGCCGGCTCCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	120872792	120871068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_120871254_120872579
ONT_simulated_read_2719928	chr11	+	1230	12	ISM	ENSMUSG00000042678.18	ENST00000644795.1	2321	22	3558	2812	3558	-2812	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGGTGTCCAAGTTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	60400359	60412521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_60400539_60400757_60400874_60401052_60401126_60401394_60401468_60401680_60401755_60401950_60402034_60405724_60405856_60407973_60408069_60408286_60408365_60409213_60409311_60411577_60411739_60412451
ONT_simulated_read_2720208	chr14	-	926	5	ISM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	2457	7448	2457	-7448	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGTGGTGAGTCAAGTAGT	NA	NA	NA	NA	NA	NA	NA	NA	66068986	66063934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453
ONT_simulated_read_272275	chrX	-	526	1	ISM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	2792	0	2643	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1427	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGCATTTTTACTAGT	NA	NA	NA	NA	NA	NA	NA	NA	153996653	153996127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_153996100_153996700
ONT_simulated_read_2726358	chr17	+	1372	9	ISM	ENSMUSG00000019432.16	ENSMUST00000172549.2	1770	11	11	603	11	-603	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGCCAGAGGACTCGGAC	NA	NA	NA	NA	NA	NA	NA	NA	35461653	35472049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35461812_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939
ONT_simulated_read_2728039	chr2	+	1320	4	ISM	ENSMUSG00000027168.22	ENSMUST00000090391.13	2869	13	16355	-113	8655	-58	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGTGCATCTAGAATTC	NA	NA	NA	NA	NA	NA	NA	NA	105522827	105527529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_105522966_105523081_105523198_105525650_105525802_105526614
ONT_simulated_read_2729179	chr4	-	1462	9	ISM	ENSMUSG00000029022.19	ENSMUST00000030886.15	1813	10	2300	0	2064	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAAGCCTCTCTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	147950876	147945234	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691
ONT_simulated_read_2729841	chr19	+	1128	3	FSM	ENSMUSG00000024912.7	ENST00000531493.5	1180	3	52	0	52	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTAGCCTAGAACACTAAC	NA	NA	NA	NA	NA	NA	NA	NA	5497948	5505720	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5498084_5500187_5500380_5504919
ONT_simulated_read_2729894	chr7	+	1161	8	ISM	ENSMUSG00000030727.13	ENSMUST00000106407.9	2234	13	0	4014	0	-4014	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGAAGAAAATCAAGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	126028237	126041059	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008
ONT_simulated_read_273004	chr19	-	1080	7	ISM	ENSMUSG00000037916.15	ENSMUST00000128787.8	1436	10	2670	0	2663	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTTCTCATCCCTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	4060003	4057561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825
ONT_simulated_read_2730107	chr6	-	233	1	NIC	ENSMUSG00000045095.17	novel	7209	24	NA	NA	230489	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACCATGTGGTTATTTGC	NA	NA	NA	NA	NA	NA	NA	NA	93660046	93659813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_93659800_93660000
ONT_simulated_read_2730623	chr11	-	880	5	NNC	ENSMUSG00000020935.9	novel	875	5	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	1500	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTTAGGTACCATGTCC	NA	NA	NA	NA	NA	NA	NA	NA	102919015	102885658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102918974
ONT_simulated_read_2731449	chr11	+	822	1	ISM	ENSMUSG00000020453.18	ENSMUST00000094471.10	2930	3	0	4615	0	-4615	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTTCAGCGCCCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	3239992	3240814	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_3240000_3240800
ONT_simulated_read_2732652	chr9	-	1755	11	ISM	ENSMUSG00000032113.17	ENSMUST00000172702.9	3797	12	2358	1460	1847	215	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACAGACCATATACAGTT	NA	NA	NA	NA	NA	NA	NA	NA	36635312	36621237	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092
ONT_simulated_read_2733250	chr7	-	188	2	ISM	ENSMUSG00000030528.13	ENST00000648453.1	4400	21	40512	14534	40512	-14534	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGTCAATAATCTATATAGC	NA	NA	NA	NA	NA	NA	NA	NA	80123928	80119492	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80119529_80123776
ONT_simulated_read_2734620	chr12	-	1815	7	ISM	ENSMUSG00000047534.18	ENSMUST00000052201.9	4017	14	13718	10577	13704	5723	internal_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCCAGAAGAAATACACAGA	NA	NA	NA	NA	NA	NA	NA	NA	65205636	65190084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168
ONT_simulated_read_2734954	chr11	-	724	1	NIC	ENSMUSG00000070354.14	novel	3944	4	NA	NA	2814	-13667	mono-exon	FALSE	NA	NA	NA	NA	NA	208	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCTGGTGGTATTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	79418601	79417877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_79417900_79418600
ONT_simulated_read_273514	chr1	-	1432	6	ISM	ENSMUSG00000073489.7	ENSMUST00000111214.4	2296	9	5053	4556	5053	-4556	internal_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGTTCATCCCAAGAAAT	NA	NA	NA	NA	NA	NA	NA	NA	173589432	173579414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_173579611_173580275_173580465_173583172_173583596_173587034_173587194_173587695_173587893_173589164
ONT_simulated_read_273692	chr19	+	1185	10	ISM	ENSMUSG00000071650.7	ENST00000540933.5	3754	23	64	5847	-30	-5847	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGATGATCACAACATG	NA	NA	NA	NA	NA	NA	NA	NA	8875434	8888164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_8875524_8879627_8879733_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071
ONT_simulated_read_2738309	chr8	-	1461	9	ISM	ENSMUSG00000002885.15	ENSMUST00000075843.13	3000	20	13200	322	13200	-320	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCAGAGAAACAGAATGCAG	NA	NA	NA	NA	NA	NA	NA	NA	84454598	84450312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373
ONT_simulated_read_2740953	chr19	-	527	1	ISM	ENSMUSG00000024812.12	ENSMUST00000233027.2	4668	23	78619	539	47274	-385	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCTCTAAGTGCCTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	24072934	24072407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_24072400_24072900
ONT_simulated_read_2741249	chr10	+	316	1	ISM	ENSMUSG00000015501.11	ENST00000367604.6	9957	10	183518	1746	182287	-969	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACAGCAAGAGCAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	14025048	14025364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_14025000_14025400
ONT_simulated_read_2743236	chr2	-	900	1	ISM	ENSMUSG00000027082.16	ENSMUST00000111711.8	3968	8	33463	2246	30499	-1663	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACGAGTGCAGTGGGCAC	NA	NA	NA	NA	NA	NA	NA	NA	84273629	84272729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_84272700_84273600
ONT_simulated_read_2743409	chr18	-	1086	8	ISM	ENSMUSG00000024588.11	ENST00000652755.1	1337	11	13749	-68	13749	68	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATCTTATTTCTCGCT	NA	NA	NA	NA	NA	NA	NA	NA	64608276	64591025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127
ONT_simulated_read_2744322	chr3	-	1818	13	ISM	ENSMUSG00000028163.18	ENSMUST00000164430.7	3007	23	55250	4065	55250	-4065	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGAGGCAGCACATAGGTAA	NA	NA	NA	NA	NA	NA	NA	NA	135318310	135295103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_135295266_135296076_135296250_135296540_135296608_135297314_135297440_135299591_135299695_135299969_135300140_135300625_135300828_135307186_135307302_135309470_135309613_135310817_135311007_135312332_135312423_135313912_135314057_135318174
ONT_simulated_read_2744589	chr3	-	1135	10	ISM	ENSMUSG00000028099.9	ENST00000369294.5	1313	11	1960	-1	1960	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1301	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGGGATCAAACTCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	96631336	96619280	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_96619377_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112
ONT_simulated_read_2746792	chr14	-	2425	7	ISM	ENSMUSG00000021824.14	ENSMUST00000154460.8	6732	9	7658	3688	7403	884	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTATATTTTAAGTAAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	21094860	21085197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720
ONT_simulated_read_2751441	chr8	-	1672	1	ISM	ENSMUSG00000031971.16	ENSMUST00000034452.12	2390	3	17028	0	17028	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGCCTTGCTAGTGATAA	NA	NA	NA	NA	NA	NA	NA	NA	124569241	124567569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_124567600_124569200
ONT_simulated_read_2751458	chr7	-	722	6	ISM	ENSMUSG00000030726.17	ENST00000532497.5	1546	11	21891	269	21891	-251	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	161	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAGTAAATGCTACCTC	NA	NA	NA	NA	NA	NA	NA	NA	99748743	99732868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670
ONT_simulated_read_2752079	chr6	+	608	6	ISM	ENSMUSG00000052337.16	ENSMUST00000064062.13	2728	15	128	22032	41	-21718	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTTGCAGCTCGTCTAG	NA	NA	NA	NA	NA	NA	NA	NA	71808442	71830196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830156
ONT_simulated_read_2752178	chr1	-	799	1	ISM	ENSMUSG00000026279.15	ENSMUST00000190116.7	5558	6	49156	2891	26302	561	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTGCTGCCAAGGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	93633346	93632547	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_93632500_93633300
ONT_simulated_read_276046	chr7	-	458	3	ISM	ENSMUSG00000002981.11	ENSMUST00000055242.11	4143	14	30020	2238	30020	-2238	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCTGTCAGCGGAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	19368938	19367733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_19367888_19367980_19368149_19368802
ONT_simulated_read_2761300	chr15	-	134	1	ISM	ENSMUSG00000063480.9	ENSMUST00000080622.9	2077	3	5257	1683	5257	-1683	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGCCAGTCATCGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	81926542	81926408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81926400_81926500
ONT_simulated_read_2761311	chr4	-	886	1	ISM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	37049	1070	37049	-1070	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATCAGGCCTCCTGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	120918389	120917503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_120917500_120918400
ONT_simulated_read_2761639	chr11	+	2292	4	FSM	ENSMUSG00000040489.6	ENST00000311371.9	2614	4	109	213	0	-212	multi-exon	FALSE	canonical	NA	NA	NA	NA	399	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATAACTTGTAGACATGG	NA	NA	NA	NA	NA	NA	NA	NA	45871136	45908609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_45872201_45874145_45874386_45875543_45875724_45907801
ONT_simulated_read_2761720	chr1	+	708	1	ISM	ENSMUSG00000037216.6	ENSMUST00000041621.5	1485	2	2883	432	2883	-432	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAGGCACCCGATCACT	NA	NA	NA	NA	NA	NA	NA	NA	37914169	37914877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_37914200_37914900
ONT_simulated_read_2765103	chr14	+	636	1	FSM	ENSMUSG00000058126.8	ENSMUST00000072359.8	2147	1	0	1511	0	-1511	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTCTTACTGATAAACTC	NA	NA	NA	NA	NA	NA	NA	NA	113552039	113552675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_113552000_113552700
ONT_simulated_read_2765377	chr8	+	1293	9	FSM	ENSMUSG00000038257.11	ENST00000340217.5	1558	9	70	195	0	-136	multi-exon	TRUE	canonical	NA	NA	NA	NA	825	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCATCGACAGGGCTAAGA	NA	NA	NA	NA	NA	NA	NA	NA	56393859	56578251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_56394010_56444160_56444289_56458151_56458220_56492616_56492841_56515465_56515549_56538148_56538287_56542018_56542234_56563481_56563626_56578108
ONT_simulated_read_2770969	chr12	+	835	8	ISM	ENSMUSG00000021288.20	ENSMUST00000084941.12	2504	16	23098	310	9628	-262	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGGAGCGTATACTAAC	NA	NA	NA	NA	NA	NA	NA	NA	111748380	111772899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755921_111761981_111762113_111772441_111772509_111772748
ONT_simulated_read_2777287	chr17	-	644	1	ISM	ENSMUSG00000023972.11	ENSMUST00000044442.10	4235	20	64020	370	64020	-370	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGGAGTCCTCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	46876410	46875766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_46875800_46876400
ONT_simulated_read_2778101	chr3	-	1101	6	ISM	ENSMUSG00000028149.13	ENSMUST00000029796.11	3383	14	117525	1360	117525	-1360	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCACATGCAGTAAGCTAC	NA	NA	NA	NA	NA	NA	NA	NA	138663306	138633030	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_138633474_138647490_138647620_138651423_138651551_138661082_138661223_138661954_138662081_138663170
ONT_simulated_read_2778142	chr3	-	533	3	ISM	ENSMUSG00000037062.14	ENSMUST00000199531.5	2584	10	27998	1217	27998	-1217	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCATAAATAGTTACTCAT	NA	NA	NA	NA	NA	NA	NA	NA	144397873	144390655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_144390901_144397218_144397294_144397660
ONT_simulated_read_2778408	chr17	-	480	1	ISM	ENSMUSG00000079444.10	ENSMUST00000143789.5	2721	9	5644	1593	5425	-1147	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCGCCTACAGGGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	47999736	47999256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_47999300_47999700
ONT_simulated_read_2781075	chr18	-	1282	1	ISM	ENSMUSG00000024486.7	ENSMUST00000025363.7	2375	6	9443	154	9443	-154	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACTACGGTCTCACCAAG	NA	NA	NA	NA	NA	NA	NA	NA	36639415	36638133	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_36638100_36639400
ONT_simulated_read_2782743	chr9	+	841	7	ISM	ENSMUSG00000055720.11	ENSMUST00000216841.2	1426	11	9038	-2	9038	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	301	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	57827354	57837251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ONT_simulated_read_2783997	chr2	-	1134	9	ISM	ENSMUSG00000002105.16	ENSMUST00000111436.3	1291	10	1572	0	23	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATGAGACTCCAGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	90899056	90893218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895250_90895353_90895926_90896085_90896357_90896472_90898775
ONT_simulated_read_2785751	chr7	-	1503	4	ISM	ENSMUSG00000025103.9	ENSMUST00000026093.9	3001	8	28320	539	28320	-539	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGAAAATGATTATCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	81450859	81442360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_81443475_81443905_81444053_81446743_81446832_81450705
ONT_simulated_read_278753	chr15	-	1492	7	ISM	ENSMUSG00000033055.13	ENSMUST00000040676.11	1904	8	1673	0	1673	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTTTTTGTGTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	78945412	78937293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_78938285_78938695_78938804_78939491_78939617_78939694_78939743_78940213_78940286_78942154_78942254_78945363
ONT_simulated_read_2788795	chr6	-	359	1	ISM	ENSMUSG00000042873.12	ENSMUST00000162280.2	4762	4	23440	3496	23407	-880	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGGTCCCTGGGGATCCC	NA	NA	NA	NA	NA	NA	NA	NA	113148905	113148546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113148500_113148900
ONT_simulated_read_2791001	chr14	-	1231	1	FSM	ENSMUSG00000115801.2	ENSMUST00000226445.2	93147	1	79295	12621	79295	-12621	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTATTTTTTTTGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	44795363	44794132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_44794100_44795400
ONT_simulated_read_2791800	chr14	-	1350	4	ISM	ENSMUSG00000022108.9	ENSMUST00000022704.9	1796	6	18799	0	18708	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5522	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTGGATGCTGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	73603930	73599665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760
ONT_simulated_read_2793764	chr10	-	1240	1	ISM	ENSMUSG00000032788.16	ENSMUST00000041616.15	5124	11	24070	2922	23948	887	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCTGAGGGGCCAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	78276739	78275499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_78275500_78276700
ONT_simulated_read_2794993	chr10	+	311	5	ISM	ENSMUSG00000020153.15	ENSMUST00000020361.7	758	8	8	1919	8	-1919	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGCCGTGGAGATGATG	NA	NA	NA	NA	NA	NA	NA	NA	80085293	80090707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673
ONT_simulated_read_2795635	chr5	-	968	7	ISM	ENSMUSG00000029455.15	ENST00000416293.7	1155	9	4152	0	4152	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	1302	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAGCTGCTCCTCAACCC	NA	NA	NA	NA	NA	NA	NA	NA	121714632	121708665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519
ONT_simulated_read_279694	chr11	-	897	1	ISM	ENSMUSG00000018733.11	ENSMUST00000018877.9	2729	4	2539	900	2457	-466	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATGGACTTTCTCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	83187264	83186367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_83186400_83187300
ONT_simulated_read_2799741	chr19	-	938	9	ISM	ENSMUSG00000041488.17	ENST00000529177.5	1491	10	15275	392	15144	-392	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATCAAAACCACCTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	11780941	11756355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_11756538_11760389_11760501_11762753_11762889_11763048_11763123_11763888_11763998_11765532_11765601_11766920_11766996_11769109_11769210_11780857
ONT_simulated_read_2802049	chr2	-	645	1	ISM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	3968	1181	3968	-1181	mono-exon	FALSE	NA	NA	NA	NA	NA	203	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCACACCTGCAAGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	25251726	25251081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25251100_25251700
ONT_simulated_read_2802408	chr19	+	3242	25	FSM	ENSMUSG00000024740.11	ENST00000680717.1	3912	25	89	581	0	-75	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTTGGCATGGGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	10582986	10606601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_10583131_10584208_10584358_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
ONT_simulated_read_2803177	chr7	-	2254	1	FSM	ENSMUSG00000108443.2	ENSMUST00000206288.2	4532	1	0	2278	0	-2278	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGTTCTTCAGAACTGG	NA	NA	NA	NA	NA	NA	NA	NA	55667227	55664973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_55665000_55667200
ONT_simulated_read_2807463	chr10	-	489	1	ISM	ENSMUSG00000062866.17	ENSMUST00000105545.12	8556	13	260139	6068	110016	0	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTGGTAGCTGAGAACT	NA	NA	NA	NA	NA	NA	NA	NA	13090017	13089528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_13089500_13090000
ONT_simulated_read_2809594	chr11	-	566	1	ISM	ENSMUSG00000069631.15	ENST00000638708.1	2097	11	29433	272	9223	193	mono-exon	FALSE	NA	NA	NA	NA	NA	492	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCCAGCTACTGAGCACC	NA	NA	NA	NA	NA	NA	NA	NA	106054979	106054413	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106054400_106055000
ONT_simulated_read_2809775	chr6	-	1540	14	ISM	ENSMUSG00000033769.17	ENST00000634650.1	2461	22	79887	169987	79887	-169987	internal_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCATTTAGCCACATCCT	NA	NA	NA	NA	NA	NA	NA	NA	84966500	84768329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_84768365_84812022_84812203_84820990_84821126_84825747_84825860_84828832_84828943_84830558_84830665_84831682_84831781_84832456_84832529_84835369_84835491_84837154_84837202_84837616_84837701_84867498_84867568_84885094_84885272_84966306
ONT_simulated_read_2811611	chr7	-	839	1	ISM	ENSMUSG00000030421.10	ENSMUST00000085513.6	3441	11	57872	840	35052	112	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCTCCCCATACACACAG	NA	NA	NA	NA	NA	NA	NA	NA	37661095	37660256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_37660300_37661100
ONT_simulated_read_2813694	chr7	-	536	4	ISM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	11822	-69	11822	69	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGGAGGGAGGGATGATTA	NA	NA	NA	NA	NA	NA	NA	NA	45072225	45071252	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111
ONT_simulated_read_281623	chr6	-	352	3	ISM	ENSMUSG00000064177.9	ENSMUST00000203770.3	891	4	401	921	0	0	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	263	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGTCAATCTGAAATGGA	NA	NA	NA	NA	NA	NA	NA	NA	113696408	113694013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113694123_113696070_113696188_113696282
ONT_simulated_read_2816423	chr4	+	477	4	ISM	ENSMUSG00000028687.18	ENST00000488731.6	581	5	1263	2	1263	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1085	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	116674894	116676628	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_116675003_116675084_116675235_116675437_116675480_116676451
ONT_simulated_read_2817460	chr17	-	2019	4	ISM	ENSMUSG00000003665.8	ENSMUST00000003762.8	2095	5	4565	0	4565	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTCCCACTTTGTCACT	NA	NA	NA	NA	NA	NA	NA	NA	18070885	18063584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_18064562_18067812_18067946_18068409_18068636_18070202
ONT_simulated_read_2818482	chr1	-	365	4	ISM	ENSMUSG00000005674.10	ENSMUST00000111327.8	2812	9	1284	2344	1284	-2344	internal_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCCATGCAAGTTATTACC	NA	NA	NA	NA	NA	NA	NA	NA	171048469	171047714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_171047755_171047869_171047993_171048115_171048222_171048373
ONT_simulated_read_2818544	chr4	-	1170	8	ISM	ENSMUSG00000028345.16	ENST00000535814.5	2848	14	2193	21176	2193	-21075	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAACCTTCGAGGCGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	48467873	48452030	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663
ONT_simulated_read_2820225	chr4	-	704	7	ISM	ENSMUSG00000040044.12	ENSMUST00000048706.10	2300	20	21777	7169	21746	-7169	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTTCAGAAGGTAGGCAT	NA	NA	NA	NA	NA	NA	NA	NA	34593167	34577964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060
ONT_simulated_read_282250	chr15	-	3751	1	ISM	ENSMUSG00000013846.11	ENSMUST00000092640.6	4985	6	7163	204	7163	-204	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTTGCCTCCTGTGACC	NA	NA	NA	NA	NA	NA	NA	NA	66978678	66974927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_66974900_66978700
ONT_simulated_read_2824211	chr4	-	1082	7	ISM	ENSMUSG00000028364.16	ENST00000537320.5	4848	20	7447	15003	7447	-15003	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCAGGCTGGTGAAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	63931414	63893543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_63893583_63894682_63894806_63924482_63924747_63925584_63925675_63925918_63926105_63926850_63927121_63931304
ONT_simulated_read_2824479	chr3	+	855	1	FSM	ENSMUSG00000105941.2	ENSMUST00000198429.2	1138	1	0	283	0	-283	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTCCTCAAGATTGCTAT	NA	NA	NA	NA	NA	NA	NA	NA	89820222	89821077	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89820200_89821100
ONT_simulated_read_282824	chr15	+	951	9	FSM	ENSMUSG00000033287.17	ENST00000403888.7	1329	9	34	344	29	-9	multi-exon	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCCCCTGGCCCGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	78312890	78322780	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321100_78321195_78321357_78321433_78321783_78321872_78322686
ONT_simulated_read_2832841	chr7	-	510	1	ISM	ENSMUSG00000003123.16	ENSMUST00000003207.11	3613	10	7727	8616	572	-8482	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACGGCCGCTGCCTGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	25088077	25087567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_25087600_25088100
ONT_simulated_read_2834772	chr5	+	1020	9	ISM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	252	5226	0	-4388	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTCCAGCCCCAACTCCA	NA	NA	NA	NA	NA	NA	NA	NA	29940937	29986250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127
ONT_simulated_read_2839270	chr12	+	1929	8	ISM	ENSMUSG00000021109.14	ENSMUST00000021530.8	4724	15	29766	1512	29766	-1512	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTATTTTTGGTGAGGG	NA	NA	NA	NA	NA	NA	NA	NA	73984443	73992792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_73984575_73986302_73986524_73987121_73987406_73988461_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
ONT_simulated_read_2840784	chr15	-	453	1	NIC	ENSMUSG00000022426.7	novel	2318	5	NA	NA	11323	-1470	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACCATGGGGTCTGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	79560374	79559921	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_79559900_79560400
ONT_simulated_read_2841598	chr19	-	973	5	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	19506	5457	19506	-5457	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCATCCTGGCGGAATGCT	NA	NA	NA	NA	NA	NA	NA	NA	60759575	60755011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452
ONT_simulated_read_2845795	chr6	+	1070	12	ISM	ENSMUSG00000029686.16	ENST00000660240.1	2567	19	30066	1455	30066	-1455	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTCCTGAAACACCAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	47491742	47501481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450
ONT_simulated_read_2846471	chr5	+	1201	8	ISM	ENSMUSG00000029466.12	ENSMUST00000122010.8	2950	12	0	6733	0	-5255	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGAACCTTGGCTGCCGC	NA	NA	NA	NA	NA	NA	NA	NA	122559755	122576242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_122559914_122560465_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191
ONT_simulated_read_2847091	chr5	-	678	6	ISM	ENSMUSG00000029730.17	ENST00000354230.7	2841	14	2300	2773	2300	-2773	internal_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTGTGAGTGGAGAACT	NA	NA	NA	NA	NA	NA	NA	NA	138167209	138165642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071
ONT_simulated_read_2847669	chr9	+	673	2	NIC	ENSMUSG00000095891.8	novel	669	3	NA	NA	0	0	intron_retention	FALSE	non_canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTCCATGTCCTACAGT	NA	NA	NA	NA	NA	NA	NA	NA	3032084	3032822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_3032635_3032699
ONT_simulated_read_284878	chr14	-	2438	1	NIC	ENSMUSG00000022051.16	novel	3259	7	NA	NA	21080	-100	mono-exon	FALSE	NA	NA	NA	NA	NA	910	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTGTCTCATCAGCACTG	NA	NA	NA	NA	NA	NA	NA	NA	67225225	67222787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_67222800_67225200
ONT_simulated_read_2851075	chr16	-	775	5	ISM	ENSMUSG00000022515.7	ENSMUST00000023157.6	2398	17	20941	0	20941	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGGGGGCTCATTTGT	NA	NA	NA	NA	NA	NA	NA	NA	4761096	4759299	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942
ONT_simulated_read_2851748	chr11	+	1304	9	ISM	ENSMUSG00000020817.17	ENSMUST00000108533.10	2791	18	-143	23299	0	-23136	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGGATGCAGACTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	70735624	70808173	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_70735835_70765571_70765701_70775590_70775795_70777836_70777998_70784394_70784515_70791297_70791434_70795430_70795610_70799211_70799344_70808140
ONT_simulated_read_2852556	chr6	-	889	3	ISM	ENSMUSG00000025889.14	ENST00000618500.4	1017	4	11849	0	11843	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	2100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAACTGGAATGAAAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	60792742	60708482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_60709146_60710087_60710172_60792600
ONT_simulated_read_2853154	chr17	-	691	3	ISM	ENSMUSG00000024097.12	ENST00000446327.6	2386	7	3241	963	2659	267	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGGTGTTAACAATTTGG	NA	NA	NA	NA	NA	NA	NA	NA	80511627	80508471	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_80509032_80510119_80510174_80511550
ONT_simulated_read_2858353	chr11	-	555	4	NNC	ENSMUSG00000020415.17	novel	664	5	NA	NA	782	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCATATGTTCAGATTGT	NA	NA	NA	NA	NA	NA	NA	NA	43315724	43311104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_43311236_43311933_43312085_43313719_43313814_43315545
ONT_simulated_read_2860586	chr2	+	1139	4	FSM	ENSMUSG00000017943.16	ENST00000612599.4	2105	4	63	903	55	210	multi-exon	FALSE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAAATGTCTTTTCTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	163280452	163296082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_163280646_163287953_163288147_163289418_163289593_163295503
ONT_simulated_read_2862763	chr15	+	649	1	NIC	ENSMUSG00000058586.13	novel	1371	12	NA	NA	15193	-539	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATACCTACATTTCCGTGA	NA	NA	NA	NA	NA	NA	NA	NA	82999687	83000336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_+_82999700_83000300
ONT_simulated_read_2863012	chr6	+	469	1	FSM	ENSMUSG00000060032.7	ENSMUST00000074556.7	1831	1	428	934	339	-653	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTAGTTATTTATGGTAG	NA	NA	NA	NA	NA	NA	NA	NA	136785669	136786138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_136785700_136786100
ONT_simulated_read_286535	chr18	-	1879	5	ISM	ENSMUSG00000037013.18	ENSMUST00000234524.2	2603	9	41666	285	41666	-285	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACTGAAAACAGAACAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	14774157	14758996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012
ONT_simulated_read_2865631	chr9	-	659	3	ISM	ENSMUSG00000048537.17	ENST00000356063.9	5060	20	1009	29982	1009	-29982	internal_fragment	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCCGCTCCTCTAGC	NA	NA	NA	NA	NA	NA	NA	NA	44637467	44627590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44627963_44629570_44629697_44637306
ONT_simulated_read_2867212	chr9	-	1195	1	ISM	ENSMUSG00000046997.6	ENSMUST00000055433.5	2720	3	74167	0	74167	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGTGTAAAGTGCTCTA	NA	NA	NA	NA	NA	NA	NA	NA	96826729	96825534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_96825500_96826700
ONT_simulated_read_2867249	chr12	+	798	6	ISM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	1	20578	0	-20578	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTGGGAAGGTAAGGCGC	NA	NA	NA	NA	NA	NA	NA	NA	110452172	110517544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495
ONT_simulated_read_2868023	chr11	-	573	1	ISM	ENSMUSG00000020282.19	ENSMUST00000020524.15	2946	18	12089	54	4224	-54	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCTCATGTGGTCAATAAA	NA	NA	NA	NA	NA	NA	NA	NA	32160211	32159638	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_32159600_32160200
ONT_simulated_read_2868509	chr3	+	2503	18	ISM	ENSMUSG00000039234.12	ENSMUST00000047923.12	3903	23	22943	4771	22908	-4771	internal_fragment	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCCCGACTCTCTGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	123084046	123154519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_123084214_123087226_123087503_123087807_123087942_123093205_123093318_123099441_123099570_123121156_123121296_123123972_123124089_123130134_123130260_123136689_123136882_123137472_123137567_123143557_123143675_123144348_123144520_123147038_123147136_123147224_123147371_123148595_123148735_123149371_123149491_123152485_123152666_123154468
ONT_simulated_read_286879	chr5	+	2199	18	ISM	ENSMUSG00000036817.15	ENSMUST00000058716.14	4134	23	26106	1334	14716	-43	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCACGGAGAGCCCATCC	NA	NA	NA	NA	NA	NA	NA	NA	139212497	139234261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ONT_simulated_read_2870641	chr15	-	1156	7	ISM	ENSMUSG00000005360.15	ENSMUST00000005493.14	4163	10	22370	4988	22015	-4988	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGGGCCTGCCCACAGA	NA	NA	NA	NA	NA	NA	NA	NA	8717878	8668595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_8668675_8671665_8671861_8672383_8672618_8675143_8675437_8679026_8679070_8680332_8680538_8717771
ONT_simulated_read_287091	chr13	-	796	8	ISM	ENSMUSG00000034675.18	ENSMUST00000109921.9	2378	14	5804	1559	5804	-1559	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCAGCAAGGAGGCCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	55630070	55623315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_55623350_55623958_55624130_55625363_55625494_55625589_55625650_55629161_55629226_55629351_55629504_55629725_55629804_55629963
ONT_simulated_read_2871581	chr4	+	924	3	FSM	ENSMUSG00000028478.19	ENST00000540080.5	918	3	-7	1	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	NA	NA	NA	NA	NA	NA	NA	NA	44012642	44032846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_44013009_44025448_44025561_44032400
ONT_simulated_read_2871966	chr14	-	1185	1	FSM	ENSMUSG00000115801.2	ENSMUST00000226445.2	93147	1	0	91962	0	-91962	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTCCTTTTGTTGTCGAA	NA	NA	NA	NA	NA	NA	NA	NA	44874658	44873473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_44873500_44874700
ONT_simulated_read_2874462	chr9	-	1440	6	ISM	ENSMUSG00000041268.18	ENSMUST00000118600.8	9465	43	56011	50218	55970	-49954	internal_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGAATATTGGTGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	54352769	54323612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_54324388_54327028_54327257_54330513_54330634_54333665_54333790_54335317_54335408_54352666
ONT_simulated_read_2874733	chr19	-	1149	1	ISM	ENSMUSG00000094936.9	ENSMUST00000180248.8	2610	4	8345	115	8295	-115	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTGACCACTACTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	4835584	4834435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4834400_4835600
ONT_simulated_read_2874897	chr2	-	750	1	NIC	ENSMUSG00000078903.11	novel	473	5	NA	NA	5492	122	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTACCAACTCTAACTG	NA	NA	NA	NA	NA	NA	NA	NA	175039362	175038612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_175038600_175039400
ONT_simulated_read_2875343	chr11	-	453	3	ISM	ENSMUSG00000025140.16	ENST00000577756.5	794	6	1377	0	1377	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	162	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGCCAGCCTTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	120532675	120531014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120531175_120532254_120532348_120532475
ONT_simulated_read_2876778	chr7	-	955	1	ISM	ENSMUSG00000032860.6	ENSMUST00000037540.5	3011	3	12898	1578	4787	-919	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGATGCCAAGCCACCCAC	NA	NA	NA	NA	NA	NA	NA	NA	100648307	100647352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_100647400_100648300
ONT_simulated_read_2878491	chr11	-	1366	5	ISM	ENSMUSG00000034201.14	ENST00000621062.4	2453	6	856	943	836	-943	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGTGGCGGGGGATCAGG	NA	NA	NA	NA	NA	NA	NA	NA	5014441	5011444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_5011818_5012154_5012327_5012414_5012512_5012593_5012702_5013825
ONT_simulated_read_2880149	chr13	-	4113	1	NIC	ENSMUSG00000035936.7	novel	5647	10	NA	NA	25881	-89	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTTCATTTTTCTAGT	NA	NA	NA	NA	NA	NA	NA	NA	25095763	25091650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_25091600_25095800
ONT_simulated_read_2884691	chr2	+	2183	1	ISM	ENSMUSG00000027236.9	ENSMUST00000028668.8	5413	8	25489	381	25373	-381	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTCAGGGTGCCGGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	121884515	121886698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_121884500_121886700
ONT_simulated_read_2884782	chr11	+	1425	10	ISM	ENSMUSG00000020790.15	ENST00000570535.5	4627	25	22010	21616	22010	-21616	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTGGTGCCCATGCCAAC	NA	NA	NA	NA	NA	NA	NA	NA	72602982	72637744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_72603176_72605190_72605310_72613453_72613590_72619586_72619711_72621297_72621448_72623073_72623240_72629077_72629283_72630814_72630884_72631227_72631428_72637681
ONT_simulated_read_288527	chr12	+	339	1	FSM	ENSMUSG00000066629.3	ENSMUST00000085720.3	315	1	0	-24	0	24	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGGTTCCTACAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	12962022	12962361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_12962000_12962400
ONT_simulated_read_2885579	chr11	-	547	1	Antisense	novelGene_ENSMUSG00000010277.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGACTGTGGAGTGTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	78162821	78162274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr11_-_78162300_78162800
ONT_simulated_read_2885882	chr9	-	1354	7	ISM	ENSMUSG00000032418.16	ENSMUST00000185374.2	3292	14	73676	845	73676	-845	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGCCTCCGTTAGCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	86495654	86464303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_86464961_86469015_86469115_86476496_86476671_86478108_86478252_86480771_86480878_86493905_86494020_86495593
ONT_simulated_read_288651	chr8	-	1373	9	ISM	ENSMUSG00000002949.16	ENSMUST00000003029.14	1790	13	7898	0	7898	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAACGGTTTGAAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	4318015	4309730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863
ONT_simulated_read_2889520	chr6	+	543	4	FSM	ENSMUSG00000004264.18	ENST00000546111.5	839	4	113	183	0	-69	multi-exon	FALSE	canonical	NA	NA	NA	NA	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCTCTTGGATTAAGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	124689298	124693721	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_124689527_124689666_124689752_124692916_124692994_124693568
ONT_simulated_read_2889639	chr8	-	127	2	ISM	ENSMUSG00000031703.9	ENSMUST00000034140.9	3306	18	115353	5099	115353	-5099	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTATCCTGGCAATAA	NA	NA	NA	NA	NA	NA	NA	NA	86452197	86449305	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_86449378_86452142
ONT_simulated_read_2889990	chr7	-	2096	12	ISM	ENSMUSG00000030824.18	ENSMUST00000033096.16	2111	13	490	0	490	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCCTGCCCTCTTCCAA	NA	NA	NA	NA	NA	NA	NA	NA	45159260	45142531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45143374_45143540_45143626_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129
ONT_simulated_read_2891572	chrX	+	359	2	ISM	ENSMUSG00000001986.17	ENST00000611689.4	640	3	229	20935	0	-20935	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGATTGCCTCAATAAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	40490441	40491945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_40490533_40491677
ONT_simulated_read_2893188	chr14	-	781	2	ISM	ENSMUSG00000034235.18	ENST00000680396.1	5700	21	42901	12671	42901	-12671	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCCAGACTTCATTGAC	NA	NA	NA	NA	NA	NA	NA	NA	20615073	20611667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20612311_20614935
ONT_simulated_read_289566	chr5	+	517	5	ISM	ENSMUSG00000035297.15	ENST00000503682.5	1660	10	10180	10426	10180	-10426	internal_fragment	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTGCATATGGGATCCTA	NA	NA	NA	NA	NA	NA	NA	NA	100676505	100685220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163
ONT_simulated_read_2899276	chr11	-	1549	8	ISM	ENSMUSG00000005949.10	ENSMUST00000108476.8	2723	12	7279	737	-2977	-154	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAAGCTTTGGGGTCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	73082589	73075159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_73075878_73076063_73076182_73077114_73077286_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503
ONT_simulated_read_2901409	chr5	-	1228	5	ISM	ENSMUSG00000029338.14	ENSMUST00000031281.14	5656	17	81750	2975	80444	-1031	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACGTTGTCCCCAGCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	98097071	98033616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_98034460_98085945_98086027_98086261_98086427_98096103_98096200_98097028
ONT_simulated_read_2904389	chr11	-	153	1	FSM	ENSMUSG00000065455.3	ENSMUST00000083521.3	92	1	0	-61	0	61	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCAAAAATTGTGGTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	86474984	86474831	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_86474800_86475000
ONT_simulated_read_2905092	chr19	-	233	1	NIC	ENSMUSG00000024790.9	novel	1442	2	NA	NA	1824	-339	mono-exon	FALSE	NA	NA	NA	NA	NA	824	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACAGACCTTGCCTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	6166618	6166385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_6166400_6166600
ONT_simulated_read_2906733	chr5	-	545	1	ISM	ENSMUSG00000029201.15	ENSMUST00000031103.14	2550	12	21887	297	21887	-297	mono-exon	FALSE	NA	NA	NA	NA	NA	379	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATGGGATTATGTCATTA	NA	NA	NA	NA	NA	NA	NA	NA	65571405	65570860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_65570900_65571400
ONT_simulated_read_29068	chr7	+	849	8	ISM	ENSMUSG00000053898.13	ENSMUST00000066264.13	1267	10	0	810	0	-810	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	137	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGACAGTGGGCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	28524641	28530862	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813
ONT_simulated_read_2907891	chr5	+	965	1	ISM	ENSMUSG00000029101.17	ENSMUST00000030984.14	5472	17	82695	491	32956	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGCCTTCCAGTGCATGT	NA	NA	NA	NA	NA	NA	NA	NA	35189483	35190448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_35189500_35190400
ONT_simulated_read_2908154	chr5	-	1563	10	ISM	ENSMUSG00000035325.17	ENST00000505472.5	4133	27	25204	1712	25204	-1324	internal_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTTTGGGAGGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	100530767	100511235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100523819_100523913_100526686_100526861_100529018_100529193_100530620
ONT_simulated_read_291232	chr2	-	1347	9	ISM	ENSMUSG00000038383.17	ENSMUST00000077626.13	1636	12	22006	0	22000	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGTTCTGATGACATGT	NA	NA	NA	NA	NA	NA	NA	NA	155177344	155120162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155120570_155134609_155134753_155139002_155139128_155140965_155141110_155143120_155143276_155156421_155156520_155170500_155170602_155173068_155173179_155177280
ONT_simulated_read_2912969	chr1	-	1302	3	ISM	ENSMUSG00000060519.12	ENSMUST00000079625.11	3285	6	7626	1282	7584	124	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTCCGCTCCAGCTCGGA	NA	NA	NA	NA	NA	NA	NA	NA	156494300	156482468	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_156483514_156484041_156484167_156494168
ONT_simulated_read_2917932	chr16	+	1336	7	ISM	ENSMUSG00000022884.17	ENSMUST00000187168.7	1238	12	2218	238	-595	-238	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAGACAAGCCTTGAATT	NA	NA	NA	NA	NA	NA	NA	NA	22928725	22931696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
ONT_simulated_read_2918205	chr16	+	1042	11	ISM	ENSMUSG00000008658.17	ENST00000422070.8	1257	12	0	595	0	-595	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTAGCAGCCCCTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	7042173	7225903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_7042415_7094888_7095033_7103341_7103396_7110048_7110142_7111933_7111995_7124271_7124326_7148225_7148307_7170795_7170929_7181728_7181769_7193768_7193834_7225827
ONT_simulated_read_2919269	chr2	-	1348	10	ISM	ENSMUSG00000026707.16	ENSMUST00000028034.15	2897	11	2002	1165	1711	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGGGGCTTTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	15052089	15001106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_15001358_15002977_15003104_15014220_15014370_15017950_15018096_15034839_15034960_15041085_15041168_15042884_15043039_15044543_15044654_15047037_15047118_15051958
ONT_simulated_read_2924197	chr9	-	1449	1	ISM	ENSMUSG00000041268.18	ENSMUST00000118163.8	10614	44	84533	50487	84362	-49270	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAGAGAGAGAACAAAT	NA	NA	NA	NA	NA	NA	NA	NA	54324377	54322928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_54322900_54324400
ONT_simulated_read_2924198	chr14	-	199	1	NIC	ENSMUSG00000021848.17	novel	2592	6	NA	NA	3545	-133	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATCTGGAGCCCAGCGTC	NA	NA	NA	NA	NA	NA	NA	NA	48896784	48896585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_48896600_48896800
ONT_simulated_read_2927038	chr12	-	952	6	ISM	ENSMUSG00000021266.17	ENSMUST00000161154.2	1824	11	17916	203	7628	-203	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCCGTCCAGGCCGCAG	NA	NA	NA	NA	NA	NA	NA	NA	108841207	108826162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_108826260_108827194_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039
ONT_simulated_read_2927050	chr9	-	612	1	NIC	ENSMUSG00000006675.11	novel	1841	9	NA	NA	13756	-222	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTGTCCTCTCATCTTA	NA	NA	NA	NA	NA	NA	NA	NA	108461023	108460411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_108460400_108461000
ONT_simulated_read_2929025	chr3	+	619	3	ISM	ENSMUSG00000027849.20	ENSMUST00000121834.8	1710	7	147	43607	0	-40217	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCAAGCCTGAGCTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	103482693	103494655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_103482857_103492657_103493007_103494548
ONT_simulated_read_2929855	chr18	+	766	3	FSM	ENSMUSG00000024544.10	ENST00000586765.1	842	3	76	0	76	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCTAGAGTGCACTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	68361137	68387612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_68361216_68368725_68368881_68387079
ONT_simulated_read_2932768	chr7	-	818	1	ISM	ENSMUSG00000030869.12	ENSMUST00000033157.10	3479	5	13577	2089	13542	-2089	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGGAACCTTTCGAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	121687532	121686714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_121686700_121687500
ONT_simulated_read_2933339	chr12	-	213	1	FSM	ENSMUSG00000042962.6	ENSMUST00000058103.6	643	1	0	430	0	-430	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAAAGTATCTCTGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	84305747	84305534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_84305500_84305700
ONT_simulated_read_2933771	chr7	-	483	1	NIC	ENSMUSG00000030516.15	novel	7049	28	NA	NA	73347	-478	mono-exon	FALSE	NA	NA	NA	NA	NA	337	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCCTAGCATACACATTT	NA	NA	NA	NA	NA	NA	NA	NA	64947416	64946933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_64946900_64947400
ONT_simulated_read_2934101	chr2	-	1009	7	ISM	ENSMUSG00000027104.19	ENSMUST00000100009.11	3936	11	16915	2460	16915	-165	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTGCACTTTCACAGATT	NA	NA	NA	NA	NA	NA	NA	NA	73676719	73649327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540
ONT_simulated_read_2935581	chr8	-	1143	4	ISM	ENSMUSG00000003813.16	ENSMUST00000109761.9	1842	9	2897	0	2873	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	203	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGCTTCTCACAGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	85564397	85561539	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85562304_85562383_85562549_85564088_85564223_85564317
ONT_simulated_read_2935965	chr13	+	792	7	ISM	ENSMUSG00000021583.8	ENST00000296754.7	2940	19	26269	17935	26269	-17935	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCTGTACTTGAAAAATGA	NA	NA	NA	NA	NA	NA	NA	NA	74814217	74820899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_74814350_74814562_74814695_74814836_74814909_74816076_74816232_74817518_74817599_74819426_74819611_74820862
ONT_simulated_read_2937526	chr4	-	978	7	ISM	ENSMUSG00000028684.15	ENST00000652287.1	1080	8	221	-2	221	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	978	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTAGCATGTTCTTTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	116850664	116847413	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850221_116850584
ONT_simulated_read_293763	chrX	-	2214	12	ISM	ENSMUSG00000031328.17	ENSMUST00000101454.9	8345	46	10327	6465	10265	-6387	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATTACTGATAACAAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	73279813	73273533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_73273573_73273661_73273765_73273906_73274003_73274111_73274360_73276754_73276945_73277527_73277685_73277768_73277893_73278209_73278381_73278470_73278632_73278715_73278879_73278961_73279136_73279225
ONT_simulated_read_2938284	chr19	-	502	1	FSM	ENSMUSG00000063754.8	ENSMUST00000183196.2	435	1	0	-67	0	67	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCACATGGTTTTAGAATG	NA	NA	NA	NA	NA	NA	NA	NA	28981242	28980740	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_28980700_28981200
ONT_simulated_read_2939024	chr4	-	1748	1	ISM	ENSMUSG00000055296.15	ENSMUST00000068792.13	15981	18	67189	11578	67163	1434	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTGCATTAAAATGGTTG	NA	NA	NA	NA	NA	NA	NA	NA	56880248	56878500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_56878500_56880200
ONT_simulated_read_2939624	chr17	+	327	6	ISM	ENSMUSG00000041119.13	ENST00000398234.7	1777	18	34	27777	7	-27774	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTGGAGATCGAAAAATGCA	NA	NA	NA	NA	NA	NA	NA	NA	31605267	31667356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_31605331_31634253_31634332_31639218_31639263_31662139_31662195_31662811_31662883_31667340
ONT_simulated_read_2941594	chr2	+	448	3	ISM	ENSMUSG00000068580.12	ENSMUST00000090174.11	2008	11	7631	126	7238	-126	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCTGGCCTCAAACAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	119046745	119047404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_119046789_119046912_119047023_119047109
ONT_simulated_read_2941597	chr6	+	1218	5	ISM	ENSMUSG00000054226.14	ENSMUST00000067137.14	2103	6	5673	844	-2941	413	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGGCCGCCTCATCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	85898401	85906420	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
ONT_simulated_read_2941669	chr12	-	652	1	FSM	ENSMUSG00000113188.2	ENSMUST00000220724.2	652	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGAGGAGGGGTGTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	13487099	13486447	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_13486400_13487100
ONT_simulated_read_2946540	chr7	-	608	6	ISM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	9829	278	9829	-278	internal_fragment	FALSE	canonical	NA	NA	NA	NA	236	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTATACTCCCTCTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	45074218	45071599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105
ONT_simulated_read_2948974	chr14	-	1357	1	ISM	ENSMUSG00000058690.15	ENSMUST00000067700.13	7334	10	88928	3467	26559	437	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCTCCATTTATCAGACA	NA	NA	NA	NA	NA	NA	NA	NA	36601716	36600359	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_36600400_36601700
ONT_simulated_read_2949082	chr7	+	919	1	ISM	ENSMUSG00000109378.2	ENSMUST00000167042.8	3007	10	2083	1613	2083	-1613	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTGCAACGCTTTGGG	NA	NA	NA	NA	NA	NA	NA	NA	30264851	30265770	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_30264900_30265800
ONT_simulated_read_2949332	chr15	-	1098	10	ISM	ENSMUSG00000033565.19	ENSMUST00000228087.2	1694	13	40095	0	39897	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATTTCCACGTCTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	76997859	76967999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804
ONT_simulated_read_2949654	chr2	-	1713	9	ISM	ENSMUSG00000027104.19	ENST00000409437.5	3724	11	10502	1877	52	-135	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCAAAAGGAAGAATATTAG	NA	NA	NA	NA	NA	NA	NA	NA	73693582	73648744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73680932_73681062_73681207_73681327_73684138_73684236_73693512
ONT_simulated_read_2954121	chr2	-	396	1	ISM	ENSMUSG00000038369.15	ENST00000374796.6	7174	16	60278	17397	32349	3482	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATGGTATACCAGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	155250354	155249958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155250000_155250400
ONT_simulated_read_2955706	chr7	-	370	1	NIC	ENSMUSG00000031021.14	novel	1703	5	NA	NA	15287	-787	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTTCCTACTTGTGACT	NA	NA	NA	NA	NA	NA	NA	NA	109336199	109335829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_109335800_109336200
ONT_simulated_read_2956820	chr11	-	1099	8	ISM	ENSMUSG00000004393.11	ENSMUST00000004507.11	1956	14	192	5081	143	-2379	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGTGTTGCCCGCGGA	NA	NA	NA	NA	NA	NA	NA	NA	6217580	6213999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417
ONT_simulated_read_2958032	chr11	+	1012	2	FSM	ENSMUSG00000043999.7	ENST00000394705.3	1864	2	2	850	2	-850	multi-exon	FALSE	canonical	NA	NA	NA	NA	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAAATGGAGATCCCATCC	NA	NA	NA	NA	NA	NA	NA	NA	30835415	30841869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_30835547_30840988
ONT_simulated_read_2959266	chr19	-	346	1	NIC	ENSMUSG00000024997.8	novel	1478	7	NA	NA	9836	-324	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTAGCCTGCCCTGAACCT	NA	NA	NA	NA	NA	NA	NA	NA	60853158	60852812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_60852800_60853200
ONT_simulated_read_2961545	chrX	-	539	4	ISM	ENSMUSG00000031304.19	ENST00000374188.7	1144	7	390	1481	390	-1481	internal_fragment	FALSE	canonical	NA	NA	NA	NA	1154	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGTACACATTTCGGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	100311471	100309893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_100309950_100310583_100310727_100310916_100311102_100311316
ONT_simulated_read_2965015	chr16	-	1098	7	ISM	ENSMUSG00000022962.16	ENSMUST00000232289.2	3276	22	12831	4054	12825	-4054	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGAAATGGCCAGGACA	NA	NA	NA	NA	NA	NA	NA	NA	91430988	91422345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762
ONT_simulated_read_2966716	chr15	-	457	4	ISM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	7327	2210	7327	-2210	internal_fragment	FALSE	canonical	NA	NA	NA	NA	232	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGCTCACCTCTGAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	31594623	31593155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_31593199_31593660_31593781_31594242_31594393_31594479
ONT_simulated_read_2967676	chr4	-	355	1	ISM	ENSMUSG00000085569.2	ENSMUST00000154352.2	707	4	27208	0	27163	0	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTGGATACACAAGATACA	NA	NA	NA	NA	NA	NA	NA	NA	89019255	89018900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_89018900_89019300
ONT_simulated_read_2967698	chr14	+	906	6	ISM	ENSMUSG00000021945.10	ENST00000382871.3	4990	25	62914	740	61735	-740	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGATATTTATGATAAAG	NA	NA	NA	NA	NA	NA	NA	NA	57187010	57197312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_57187136_57187633_57187786_57193636_57193752_57194308_57194561_57195638_57195760_57197171
ONT_simulated_read_2968553	chr18	-	1417	8	ISM	ENSMUSG00000024357.11	ENSMUST00000235619.2	1524	9	60517	0	60485	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTCTCTTGTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	35571430	35399448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481809_35571319
ONT_simulated_read_2970031	chr17	-	129	1	ISM	ENSMUSG00000024173.12	ENSMUST00000153118.2	1156	5	1971	183	1639	0	mono-exon	FALSE	NA	NA	NA	NA	NA	213	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTCTGAGTCACATCCAG	NA	NA	NA	NA	NA	NA	NA	NA	25562530	25562401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_25562400_25562500
ONT_simulated_read_2970719	chr8	+	1693	7	ISM	ENSMUSG00000014786.9	ENSMUST00000073149.7	3499	16	0	11755	0	-11755	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGCTGAATCAGTTCCGG	NA	NA	NA	NA	NA	NA	NA	NA	106075474	106083620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_106076205_106080054_106080358_106081775_106081940_106082102_106082182_106082478_106082657_106083162_106083384_106083602
ONT_simulated_read_297236	chr1	-	639	4	ISM	ENSMUSG00000026709.11	ENST00000647645.1	2064	16	24788	-1	24788	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	283	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAGAACCAAATGTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	160873010	160869231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827
ONT_simulated_read_2976130	chr9	-	166	2	ISM	ENSMUSG00000032565.10	ENSMUST00000035179.9	1631	3	44	2203	44	-2203	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCCCTGGCGGCTTCGTG	NA	NA	NA	NA	NA	NA	NA	NA	105008979	105008733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_105008762_105008841
ONT_simulated_read_2977776	chrX	+	1253	6	ISM	ENSMUSG00000031438.12	ENSMUST00000113026.2	2750	7	0	7691	0	-7684	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCGCAGTGAGACTGCAT	NA	NA	NA	NA	NA	NA	NA	NA	138511368	138566203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_138512039_138543034_138543283_138559564_138559637_138564334_138564418_138565236_138565334_138566120
ONT_simulated_read_2978792	chr4	-	174	1	ISM	ENSMUSG00000028495.15	ENSMUST00000102814.5	878	5	2505	74	2505	-74	mono-exon	FALSE	NA	NA	NA	NA	NA	2276	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTCTAAGTCTGAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	86773144	86772970	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_86773000_86773100
ONT_simulated_read_297900	chr4	-	1076	7	ISM	ENSMUSG00000029061.3	ENSMUST00000030937.2	1434	8	800	0	800	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTGTTGTTTCCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	155737041	155735111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_155735341_155735463_155735591_155735695_155735807_155735887_155736053_155736441_155736610_155736678_155736819_155736905
ONT_simulated_read_2980215	chr19	+	1103	1	FSM	ENSMUSG00000047379.8	ENSMUST00000235776.2	2224	1	-81	1202	0	-1202	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCCCTGGAGGGACCCC	NA	NA	NA	NA	NA	NA	NA	NA	5088853	5089956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_5088900_5090000
ONT_simulated_read_2981661	chr5	-	1556	9	ISM	ENSMUSG00000029169.12	ENSMUST00000031061.12	3010	14	23666	190	23641	-190	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTTAGAAATGGTTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	52324190	52307734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042
ONT_simulated_read_2981908	chr14	-	1626	1	ISM	ENSMUSG00000048349.10	ENSMUST00000053016.10	4445	3	3502	1196	3502	-1196	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTATTTCTTTCTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	104701933	104700307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_104700300_104701900
ONT_simulated_read_2982496	chr8	+	774	7	ISM	ENSMUSG00000003573.16	ENSMUST00000003669.8	2323	9	685	1322	539	-133	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGGAGGCGCGGGCCGA	NA	NA	NA	NA	NA	NA	NA	NA	70738580	70745681	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70738713_70742043_70742152_70742701_70742824_70743656_70743814_70743967_70744079_70744166_70744254_70745624
ONT_simulated_read_2982851	chr19	+	792	6	FSM	ENSMUSG00000048029.11	ENST00000409522.5	813	6	21	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	375	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGAGTATGGGGTATGTGC	NA	NA	NA	NA	NA	NA	NA	NA	58931856	58957610	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_58932054_58947437_58947495_58948554_58948723_58952809_58953006_58956933_58957002_58957504
ONT_simulated_read_2983890	chr10	-	955	1	ISM	ENSMUSG00000042570.15	ENSMUST00000062855.15	2562	14	13892	0	761	0	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTCATGGATTCCA	NA	NA	NA	NA	NA	NA	NA	NA	79377033	79376078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_79376100_79377000
ONT_simulated_read_2985310	chr4	-	452	1	ISM	ENSMUSG00000040387.17	ENSMUST00000108218.10	7143	11	200885	37234	93728	-32515	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCTATGACCCCCGCAGTA	NA	NA	NA	NA	NA	NA	NA	NA	24650239	24649787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_24649800_24650200
ONT_simulated_read_2985500	chrX	-	1423	5	ISM	ENSMUSG00000006423.16	ENSMUST00000115248.10	3340	7	7360	1554	7246	957	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTGTTGGGCATCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	36120539	36113749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_36114816_36116291_36116385_36116982_36117073_36117935_36118075_36120504
ONT_simulated_read_2985718	chr11	+	536	1	FSM	ENSMUSG00000078851.5	ENSMUST00000108817.5	2146	1	0	1610	0	-1610	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGTCGCCAGTTACTGG	NA	NA	NA	NA	NA	NA	NA	NA	58845510	58846046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_58845500_58846000
ONT_simulated_read_2987766	chr4	-	763	4	ISM	ENSMUSG00000028546.18	ENST00000650764.1	1803	6	60965	418	60263	-418	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACCAACAAAGCCCACAA	NA	NA	NA	NA	NA	NA	NA	NA	110083823	110063555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_110063857_110068622_110068849_110070324_110070479_110083741
ONT_simulated_read_2989852	chr16	-	980	4	ISM	ENSMUSG00000052504.8	ENSMUST00000232654.2	2338	7	20000	42131	19923	-42131	internal_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCATATGTAAAAAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	63664520	63472805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_63472914_63473785_63473942_63593272_63593934_63664465
ONT_simulated_read_2993608	chr8	+	741	5	NNC	ENSMUSG00000031818.13	novel	745	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	183	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	NA	NA	NA	NA	NA	NA	NA	121394960	121400946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_+_121395095_121396047_121396122_121399467_121399632_121399959_121400092_121400709
ONT_simulated_read_2993638	chr14	+	298	4	ISM	ENSMUSG00000022111.10	ENSMUST00000002289.8	903	9	31	29538	31	-29538	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAACAAACCATCAGCAAT	NA	NA	NA	NA	NA	NA	NA	NA	101891460	101904023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_101891542_101891643_101891656_101903196_101903326_101903947
ONT_simulated_read_2994618	chr11	-	1192	9	ISM	ENSMUSG00000018861.9	ENST00000582944.5	1393	11	4266	-58	4266	58	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGACGGCCCTGGCTTAG	NA	NA	NA	NA	NA	NA	NA	NA	115162736	115159074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115159281_115159403_115159575_115160270_115160443_115160522_115160723_115160840_115160926_115161148_115161257_115162087_115162190_115162482_115162597_115162702
ONT_simulated_read_2995313	chr1	+	773	4	ISM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	0	1091	0	-415	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGTCTGTGGGAAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	172327613	172333856	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752
ONT_simulated_read_2996263	chr17	-	1272	4	ISM	ENSMUSG00000056121.17	ENSMUST00000070039.14	1939	8	17233	0	17185	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGAGTCTTGAGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	78708327	78685313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_78686175_78689036_78689103_78692172_78692249_78708058
ONT_simulated_read_2996366	chr8	+	2424	1	FSM	ENSMUSG00000040236.5	ENSMUST00000207787.2	4411	1	0	1987	0	-676	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGGTTGTATAGGTATC	NA	NA	NA	NA	NA	NA	NA	NA	3726509	3728933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_3726500_3728900
ONT_simulated_read_2997565	chr5	+	310	3	ISM	ENSMUSG00000056076.14	ENSMUST00000100507.8	2945	19	7762	13213	7762	-13213	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGCGAAAGCTCAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	140412844	140415902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_140412901_140413164_140413323_140415806
ONT_simulated_read_3000136	chr9	+	2431	19	ISM	ENSMUSG00000032612.15	ENSMUST00000194959.6	3436	21	8541	728	8541	-728	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGCATGGGGGATGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	108233652	108268991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243959_108244078_108245017_108245192_108248099_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005_108262156_108265475_108265580_108268178_108268268_108268877
ONT_simulated_read_3002786	chr11	-	648	5	ISM	ENSMUSG00000018570.18	ENSMUST00000018714.13	1485	8	1675	0	1623	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTGCTGGGAGCTGCG	NA	NA	NA	NA	NA	NA	NA	NA	69790089	69788188	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69788319_69788928_69788977_69789077_69789237_69789672_69789919_69790024
ONT_simulated_read_3003099	chr3	+	1404	1	NIC	ENSMUSG00000001419.18	novel	5401	11	NA	NA	25680	-275	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCCCTTCCCCAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	88075558	88076962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_+_88075600_88077000
ONT_simulated_read_3003483	chr10	-	657	1	ISM	ENSMUSG00000020181.19	ENSMUST00000032719.15	9962	39	315990	2314	148992	427	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAAAAGGAATTGTGCACC	NA	NA	NA	NA	NA	NA	NA	NA	109520090	109519433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_109519400_109520100
ONT_simulated_read_3004146	chr11	+	482	1	ISM	ENSMUSG00000000282.13	ENSMUST00000000291.9	4590	6	0	14324	0	-10899	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGCGGCCCGGCTGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	74721745	74722227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_74721700_74722200
ONT_simulated_read_3005680	chr2	-	1829	1	ISM	ENSMUSG00000026872.19	ENST00000638007.1	9123	9	34925	4066	34925	164	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTCATCTTGTTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	44879129	44877300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_44877300_44879100
ONT_simulated_read_3007374	chr8	-	352	1	ISM	ENSMUSG00000037993.9	ENSMUST00000042601.9	4463	27	17402	97	14326	-92	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTTAATCCTTGTGTAA	NA	NA	NA	NA	NA	NA	NA	NA	110275091	110274739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_110274700_110275100
ONT_simulated_read_3009438	chr3	+	349	3	ISM	ENSMUSG00000028137.10	ENSMUST00000199775.5	2351	12	6199	5527	6199	-5521	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCATACCCTCCCACCC	NA	NA	NA	NA	NA	NA	NA	NA	94392583	94393974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_94392709_94392803_94392884_94393830
ONT_simulated_read_3011482	chr9	-	1117	1	ISM	ENSMUSG00000036737.13	ENSMUST00000040853.11	4647	18	81213	1666	81213	-1666	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTGACCCAGGATGGAA	NA	NA	NA	NA	NA	NA	NA	NA	119070280	119069163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_119069200_119070300
ONT_simulated_read_3013297	chr16	+	652	1	Genic_Genomic	ENSMUSG00000117327.2	novel	NA	NA	NA	NA	0	41	mono-exon	FALSE	NA	NA	NA	NA	NA	576	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATAGCCTTTCTTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	21715255	21715907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr16_+_21715300_21715900
ONT_simulated_read_3014390	chr1	-	891	4	ISM	ENSMUSG00000026374.15	ENSMUST00000027623.9	7063	6	2575	5662	2575	-5662	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCACAAGTAAACAATGATG	NA	NA	NA	NA	NA	NA	NA	NA	118236571	118228169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_118228768_118232420_118232501_118232929_118233046_118236474
ONT_simulated_read_301748	chr11	-	444	1	FSM	ENSMUSG00000099681.2	ENSMUST00000190120.2	3708	1	2610	654	2610	-654	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGCTCTGGCTCAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	105069649	105069205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_105069200_105069600
ONT_simulated_read_3018369	chr10	-	1302	1	FSM	ENSMUSG00000063953.4	ENSMUST00000080898.4	3218	1	0	1916	0	-1916	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTTTGCTAAGAAACAGCA	NA	NA	NA	NA	NA	NA	NA	NA	35587888	35586586	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_35586600_35587900
ONT_simulated_read_3018532	chr8	-	641	3	ISM	ENSMUSG00000001062.19	ENSMUST00000122363.8	2952	15	9161	372	8905	-369	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACAGCCCAAGTTTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	123971926	123969466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123969929_123970426_123970532_123971852
ONT_simulated_read_3018988	chr11	+	464	4	ISM	ENSMUSG00000001039.13	ENSMUST00000102657.10	817	7	3972	0	3972	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCCTTCATTTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	61399941	61403757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_61399995_61400295_61400359_61403197_61403266_61403477
ONT_simulated_read_3019323	chr2	+	446	7	ISM	ENSMUSG00000027326.14	ENSMUST00000028799.12	5527	8	10131	4670	0	-4670	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTACCAAAAATGAAAATTCT	NA	NA	NA	NA	NA	NA	NA	NA	118887761	118898730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
ONT_simulated_read_3021429	chr12	-	330	3	ISM	ENSMUSG00000002799.7	ENSMUST00000075827.5	5106	26	19216	1511	19216	-1511	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTGCGTATGGTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	112874180	112872949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_112873006_112873172_112873330_112874063
ONT_simulated_read_302264	chr11	-	870	8	ISM	ENSMUSG00000018677.10	ENST00000537904.6	1032	10	854	0	854	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGGGAGCAACCGGCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	102296629	102294242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518
ONT_simulated_read_3023465	chr7	-	372	3	ISM	ENSMUSG00000031021.14	ENSMUST00000033333.13	1703	5	6860	1031	6860	-1029	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCGACCGACACGTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	109344626	109336071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_109336199_109342753_109342889_109344516
ONT_simulated_read_3024806	chr4	-	994	5	ISM	ENSMUSG00000053730.16	ENSMUST00000102588.10	1810	9	4733	244	4733	-244	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAGAGGGACCTGGACCA	NA	NA	NA	NA	NA	NA	NA	NA	129585898	129570391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760
ONT_simulated_read_302663	chr7	-	493	1	ISM	ENSMUSG00000049600.9	ENSMUST00000210282.2	3908	3	3461	1949	3461	-136	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCCCCGCCAGGTATG	NA	NA	NA	NA	NA	NA	NA	NA	12740266	12739773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_12739800_12740300
ONT_simulated_read_3027151	chr18	+	295	3	ISM	ENSMUSG00000001473.8	ENST00000592683.5	437	4	-9	8334	0	-8334	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGCCTGACAACTTCATCT	NA	NA	NA	NA	NA	NA	NA	NA	67523786	67526103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_67523885_67524394_67524504_67526015
ONT_simulated_read_3032383	chr3	-	813	6	ISM	ENSMUSG00000064068.16	ENSMUST00000119222.9	1197	7	1185	65	1185	-65	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCGTCTCCCCATGGTTG	NA	NA	NA	NA	NA	NA	NA	NA	89120029	89116463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_89116729_89116811_89116967_89117413_89117491_89117572_89117756_89117890_89117984_89119989
ONT_simulated_read_3036312	chr11	-	589	4	ISM	ENSMUSG00000044041.5	ENSMUST00000007275.3	1654	8	2430	88	2430	-88	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACCCCATTCTCTCTATT	NA	NA	NA	NA	NA	NA	NA	NA	100009962	100008240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100008493_100008808_100008832_100009558_100009780_100009869
ONT_simulated_read_3037537	chr16	-	1137	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	956	0	-956	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCAACTCCTTCACAAAC	NA	NA	NA	NA	NA	NA	NA	NA	45975440	45974303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_45974300_45975400
ONT_simulated_read_3037564	chr3	+	781	6	ISM	ENSMUSG00000028256.17	ENSMUST00000098538.9	2564	17	14027	7016	-3007	-4204	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGAGCAGGCGCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	144838376	144852640	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144852523
ONT_simulated_read_303955	chr6	+	576	4	ISM	ENSMUSG00000030204.11	ENSMUST00000032326.11	1764	12	7388	235	7388	-235	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGACTGGCCGCTCTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	134995962	135000504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_134996075_134997578_134997650_134998411_134998542_135000241
ONT_simulated_read_3043024	chr4	+	818	6	ISM	ENSMUSG00000028309.15	ENSMUST00000029989.11	4154	21	27	18185	27	-18184	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGCGTGTAGAGTCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	49632092	49638702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_49632212_49632364_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624
ONT_simulated_read_3043366	chr3	-	344	1	ISM	ENSMUSG00000028072.7	ENSMUST00000029712.5	2588	17	16575	0	16575	0	mono-exon	FALSE	NA	NA	NA	NA	NA	324	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTCTCTTGGCCATTC	NA	NA	NA	NA	NA	NA	NA	NA	87685894	87685550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_87685600_87685900
ONT_simulated_read_3044678	chr5	-	709	5	ISM	ENSMUSG00000037364.13	ENSMUST00000197466.5	2972	20	10732	-4	10253	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTGTGCTGTATGTCCC	NA	NA	NA	NA	NA	NA	NA	NA	137295196	137293972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137294169_137294248_137294355_137294479_137294570_137294728_137294886_137295036
ONT_simulated_read_304631	chr1	-	1166	13	NIC	ENSMUSG00000025909.17	novel	1554	17	NA	NA	21047	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTGAGCTCTGCCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	8853120	8433698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_8433858_8533617_8533690_8535660_8535778_8624948_8624988_8653428_8653559_8665635_8665767_8677293_8677377_8695002_8695106_8748030_8748073_8748160_8748202_8749296_8749355_8752196_8752254_8852986
ONT_simulated_read_3047161	chr16	-	408	1	ISM	ENSMUSG00000059920.10	ENSMUST00000076991.7	5522	3	4213	4405	4213	-4405	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGAAGTTCCCTTGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	64587311	64586903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_64586900_64587300
ONT_simulated_read_3047685	chrX	-	406	1	NIC	ENSMUSG00000015290.16	novel	2442	4	NA	NA	1086	283	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTAGTATTCCCATTTAG	NA	NA	NA	NA	NA	NA	NA	NA	73411193	73410787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_73410800_73411200
ONT_simulated_read_3052666	chr4	-	731	6	ISM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	9939	692	9939	-692	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	225	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGGGGGCAGTGTGTCATC	NA	NA	NA	NA	NA	NA	NA	NA	149241225	149235139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063
ONT_simulated_read_3053556	chr1	-	590	7	ISM	ENSMUSG00000026245.17	ENSMUST00000068333.14	1951	17	16297	37858	16259	-37858	internal_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTGACATTGTGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	78449237	78439562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120
ONT_simulated_read_3056215	chr5	-	664	1	ISM	ENSMUSG00000086247.8	ENSMUST00000130892.8	1250	3	8050	283	-6012	-283	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGCTACTAAAATAATCACC	NA	NA	NA	NA	NA	NA	NA	NA	110316320	110315656	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_110315700_110316300
ONT_simulated_read_3069357	chr1	+	555	2	ISM	ENSMUSG00000026308.9	ENSMUST00000027533.9	3089	8	0	8376	0	-8376	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCGGCCGATACCTCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	91278737	91281762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_91278858_91281327
ONT_simulated_read_3070959	chr9	+	1615	7	ISM	ENSMUSG00000032267.9	ENSMUST00000047349.8	4133	24	46749	320	46749	-320	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTGACAGATGCCACAC	NA	NA	NA	NA	NA	NA	NA	NA	48943513	48953490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
ONT_simulated_read_3071384	chr2	+	1722	14	ISM	ENSMUSG00000027006.14	ENSMUST00000028392.8	4042	23	15827	960	14017	-960	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTTGTGTCTTTGTTGT	NA	NA	NA	NA	NA	NA	NA	NA	80161636	80183427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_80161751_80163272_80163363_80164069_80164184_80165796_80165912_80170816_80170945_80171155_80171273_80174260_80174363_80175267_80175424_80176855_80176990_80177687_80177742_80177991_80178140_80179612_80179733_80180972_80181078_80183202
ONT_simulated_read_3074767	chr15	-	989	1	ISM	ENSMUSG00000042292.19	ENSMUST00000134469.9	4392	15	173514	3950	87864	-3940	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGCTGATGAACAGGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	80901420	80900431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_80900400_80901400
ONT_simulated_read_3075728	chr11	+	669	5	ISM	ENSMUSG00000069844.13	ENSMUST00000092996.5	2412	6	1105	1496	8	-36	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGGAAGCTTTGTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	66944600	66954902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_66944692_66946556_66946755_66947340_66947434_66949152_66949269_66954731
ONT_simulated_read_3076444	chr10	+	1073	8	ISM	ENSMUSG00000019977.17	ENST00000367826.6	2639	17	44	21589	20	10211	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGAGTTTGAAGCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	21171956	21223194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_21172076_21175076_21175143_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160
ONT_simulated_read_3076541	chr3	+	209	2	ISM	ENSMUSG00000042747.13	ENSMUST00000168900.3	582	5	0	2880	0	-2880	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGCTGGCATGCAGATCT	NA	NA	NA	NA	NA	NA	NA	NA	89153740	89154136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89153901_89154087
ONT_simulated_read_3076560	chr13	-	520	5	ISM	ENSMUSG00000015937.16	ENSMUST00000045788.9	1933	9	31045	9629	23967	-9112	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTAATAGTCCTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	56252298	56231063	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_56231108_56232008_56232099_56236064_56236156_56243936_56244048_56252114
ONT_simulated_read_3076810	chr17	-	438	5	ISM	ENSMUSG00000024118.15	ENSMUST00000024930.8	2166	10	1583	1312	1583	-1312	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTCTGCCTGCAGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	24438181	24435339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126
ONT_simulated_read_3077289	chr10	-	1317	1	ISM	ENSMUSG00000020238.15	ENSMUST00000020463.14	3118	14	8827	0	8761	0	mono-exon	FALSE	NA	NA	NA	NA	NA	185	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGACCAGAACCCTGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	81323399	81322082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_81322100_81323400
ONT_simulated_read_3079174	chr2	+	831	5	ISM	ENSMUSG00000027333.19	ENSMUST00000110180.2	1617	8	28193	190	28193	-190	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTAGAATGGAATTTTACC	NA	NA	NA	NA	NA	NA	NA	NA	131362105	131366897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_131362189_131362331_131362567_131362974_131363092_131363978_131364140_131366662
ONT_simulated_read_3079420	chr19	-	154	2	ISM	ENSMUSG00000024870.7	ENSMUST00000025804.7	1913	6	6316	1304	6220	-121	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGGCATTCATGACAATG	NA	NA	NA	NA	NA	NA	NA	NA	5150784	5150536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5150601_5150694
ONT_simulated_read_3084023	chr17	-	1088	3	ISM	ENSMUSG00000079557.12	ENSMUST00000173015.8	1418	5	15439	0	15439	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATGTTTCTAAGCTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	33922175	33910488	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_33911178_33915010_33915221_33921986
ONT_simulated_read_3089710	chr15	-	167	1	ISM	ENSMUSG00000022453.9	ENSMUST00000023088.8	1913	10	8920	208	8876	-99	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTGACTCAGAAATCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	82214107	82213940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_82213900_82214100
ONT_simulated_read_3089725	chr13	+	617	1	ISM	ENSMUSG00000021518.5	ENSMUST00000021990.4	3424	13	0	64955	0	-64955	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGTCCCAGCCTTCTAGG	NA	NA	NA	NA	NA	NA	NA	NA	67080893	67081510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_67080900_67081500
ONT_simulated_read_3089994	chr19	+	1034	9	ISM	ENSMUSG00000024911.8	ENSMUST00000025847.7	1215	10	0	674	0	-674	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGGCTCTTCCTCAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	5510656	5514403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513354_5513631_5513741_5513814_5513879_5514156_5514244_5514361
ONT_simulated_read_3092300	chrX	+	434	5	FSM	ENSMUSG00000002014.13	ENST00000370085.3	505	5	-4	75	-4	-75	multi-exon	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTGCAAAGAGCCACATC	NA	NA	NA	NA	NA	NA	NA	NA	72830829	72834335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_72830913_72832440_72832560_72833636_72833727_72833964_72834031_72834259
ONT_simulated_read_3094350	chr5	+	319	4	ISM	ENSMUSG00000040274.12	ENSMUST00000042410.5	2470	7	128849	1517	128849	-1517	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAGATCTGGAGAGATAC	NA	NA	NA	NA	NA	NA	NA	NA	3523160	3570708	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_3523229_3565453_3565505_3569358_3569495_3570644
ONT_simulated_read_3094972	chr4	-	1422	10	ISM	ENSMUSG00000009640.12	ENSMUST00000102687.4	1566	11	290	85	290	-85	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTCTGTGAAGAAAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	117539180	117531962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029
ONT_simulated_read_3095120	chr8	+	279	3	ISM	ENSMUSG00000031613.10	ENST00000422112.6	670	5	0	2458	0	-2458	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTGTGCTTCGAAGCAC	NA	NA	NA	NA	NA	NA	NA	NA	56747619	56770811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_56747748_56747973_56748098_56770784
ONT_simulated_read_3098245	chr4	-	499	1	ISM	ENSMUSG00000050608.12	ENSMUST00000143971.2	2549	4	27101	1700	27101	-1700	mono-exon	FALSE	NA	NA	NA	NA	NA	231	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGCCAGCCCCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	138831323	138830824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_138830800_138831300
ONT_simulated_read_3103683	chr6	-	481	6	ISM	ENSMUSG00000030304.12	ENSMUST00000136008.8	4174	14	12985	8958	12985	-8958	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGTAAGTGGGGCCTAAC	NA	NA	NA	NA	NA	NA	NA	NA	148100887	148089534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853
ONT_simulated_read_3104251	chr11	-	979	1	ISM	ENSMUSG00000020288.14	ENSMUST00000109539.8	3583	9	8236	834	8160	-169	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTCTGAGGTGCTAGTG	NA	NA	NA	NA	NA	NA	NA	NA	23439694	23438715	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_23438700_23439700
ONT_simulated_read_310436	chr4	+	1160	10	ISM	ENSMUSG00000039768.17	ENST00000294401.11	2140	15	36181	385	36124	-385	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGGGCACTGTATCAATT	NA	NA	NA	NA	NA	NA	NA	NA	152054271	152065297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
ONT_simulated_read_3105165	chr8	-	1758	8	ISM	ENSMUSG00000040010.11	ENSMUST00000045557.10	3517	10	19297	962	19297	-962	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTTGAGACTGCTAGTAG	NA	NA	NA	NA	NA	NA	NA	NA	122615136	122608850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_122609835_122610329_122610508_122611721_122611872_122612647_122612745_122613018_122613123_122613596_122613721_122614235_122614281_122615060
ONT_simulated_read_310536	chr17	-	931	1	ISM	ENSMUSG00000024002.19	ENSMUST00000003726.16	5957	20	86317	576	86317	-576	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGACTGTGGCTGTACTG	NA	NA	NA	NA	NA	NA	NA	NA	32416754	32415823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32415800_32416800
ONT_simulated_read_3107399	chr7	-	1661	10	ISM	ENSMUSG00000035401.10	ENST00000524767.5	4087	21	6947	28666	6947	-28666	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTATATCTAGAGTATGT	NA	NA	NA	NA	NA	NA	NA	NA	98297112	98268504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98288937_98289091_98290699_98290876_98294373_98294416_98295655_98295731_98297011
ONT_simulated_read_3108453	chr18	-	527	1	ISM	ENSMUSG00000057455.13	ENSMUST00000153060.8	1806	5	341629	663	341568	0	mono-exon	FALSE	NA	NA	NA	NA	NA	182	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCTGTAAAGTGTAGCT	NA	NA	NA	NA	NA	NA	NA	NA	31108557	31108030	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_31108000_31108600
ONT_simulated_read_3109303	chr15	-	2107	7	ISM	ENSMUSG00000022246.15	ENSMUST00000227506.2	4732	17	121849	3406	121291	-3406	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGCTACAGCAGCAGGTC	NA	NA	NA	NA	NA	NA	NA	NA	10592335	10572460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10591672_10591702_10592157
ONT_simulated_read_3113765	chr1	-	167	1	ISM	ENSMUSG00000026525.10	ENSMUST00000027809.8	1913	4	29649	540	29649	-540	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTCAGTCGAGGACAGTG	NA	NA	NA	NA	NA	NA	NA	NA	175490693	175490526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_175490500_175490700
ONT_simulated_read_3115555	chr2	-	1346	9	ISM	ENSMUSG00000060131.12	ENST00000284509.11	3603	26	108434	232	108434	-232	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCAGGAGGGCTACGGAG	NA	NA	NA	NA	NA	NA	NA	NA	126214173	126164910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_126165012_126167194_126167326_126172781_126172921_126179296_126179543_126184874_126184959_126199935_126200160_126200687_126200872_126203675_126203824_126214084
ONT_simulated_read_3116352	chr9	-	2908	1	ISM	ENSMUSG00000032020.16	ENSMUST00000044155.15	6354	14	143046	1011	64490	-1011	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGCAGTGGTGAATTGCT	NA	NA	NA	NA	NA	NA	NA	NA	40926312	40923404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_40923400_40926300
ONT_simulated_read_311764	chr7	-	1408	8	ISM	ENSMUSG00000025474.10	ENST00000682905.1	2750	17	2634	8749	2634	-8749	internal_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGCAGTGTTTACCATCA	NA	NA	NA	NA	NA	NA	NA	NA	139611065	139584711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923
ONT_simulated_read_3122215	chr17	-	1567	1	NIC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	27062	-583	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCAGATACCCTTGAACAA	NA	NA	NA	NA	NA	NA	NA	NA	24443321	24441754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_24441800_24443300
ONT_simulated_read_312264	chr17	-	339	4	ISM	ENSMUSG00000024043.14	ENST00000531294.5	1753	15	38760	0	38760	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGATTGTTCAATAATCT	NA	NA	NA	NA	NA	NA	NA	NA	68164501	68156046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_68156113_68159905_68160031_68162428_68162486_68164410
ONT_simulated_read_3122990	chr2	+	2318	3	ISM	ENSMUSG00000078877.12	ENSMUST00000132883.8	2505	4	5129	184	0	-184	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATGAATGTAAACAATGTG	NA	NA	NA	NA	NA	NA	NA	NA	176499154	176502832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_176499282_176499487_176499549_176500702
ONT_simulated_read_3128589	chr8	-	895	6	ISM	ENSMUSG00000031561.17	ENSMUST00000110346.9	2267	10	187889	5904	187889	-5904	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCAATCCAGGCTGGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	48820459	48794131	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_48794190_48795291_48795487_48795649_48795752_48796266_48796478_48802233_48802449_48820345
ONT_simulated_read_313232	chr7	-	1423	10	NIC	ENSMUSG00000059119.10	novel	2259	15	NA	NA	12839	-503	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATTTACTTGTGCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	143089726	143067827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634
ONT_simulated_read_3132468	chr1	-	467	4	ISM	ENSMUSG00000048402.15	ENST00000452319.6	4447	11	19694	6370	19694	-6370	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACCCCAGCTCACTCCG	NA	NA	NA	NA	NA	NA	NA	NA	118776222	118769885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_118769928_118772080_118772246_118773646_118773797_118776112
ONT_simulated_read_3133693	chr19	-	726	6	ISM	ENSMUSG00000034371.10	ENSMUST00000037678.7	2253	17	9704	323	9704	-323	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACCTCTGCATGGAACAG	NA	NA	NA	NA	NA	NA	NA	NA	10571918	10569886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794
ONT_simulated_read_3133927	chr5	-	559	1	NIC	ENSMUSG00000053553.12	novel	1429	5	NA	NA	99119	-1086	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCAGGCAAGCACAGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	139347138	139346579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_139346600_139347100
ONT_simulated_read_3137641	chr11	-	1146	10	ISM	ENSMUSG00000038909.17	ENST00000509773.5	1773	13	4034	1905	3433	-1905	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAGCGCCCACTGTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	95196995	95168403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95193958_95194136_95196874
ONT_simulated_read_3137862	chr15	+	698	5	ISM	ENSMUSG00000022369.14	ENSMUST00000169667.2	2570	12	40807	167	40807	-167	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTCCATGGTGTCCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	55480982	55489651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_55481145_55483033_55483272_55484018_55484133_55488786_55488853_55489533
ONT_simulated_read_3139227	chr19	-	329	2	ISM	ENSMUSG00000025007.14	ENSMUST00000176939.8	3427	19	34768	822	34768	-822	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTGATCTCGTCCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	40542045	40539522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_40539774_40541967
ONT_simulated_read_3139752	chr18	-	726	1	ISM	ENSMUSG00000024487.6	ENSMUST00000025364.6	3328	6	13047	1761	13047	-1761	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCTTACTACAGAGATGAA	NA	NA	NA	NA	NA	NA	NA	NA	40339435	40338709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_40338700_40339400
ONT_simulated_read_3140875	chr11	+	733	1	NIC	ENSMUSG00000001755.13	novel	2138	10	NA	NA	0	-3262	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGACCCTGGACGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	100973450	100974183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_100973400_100974200
ONT_simulated_read_3142304	chr9	-	1755	13	ISM	ENSMUSG00000032492.15	ENSMUST00000006005.12	2307	14	11078	59	10701	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCAGAGTTTGGCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	110560709	110551268	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_110551703_110552653_110552696_110552777_110552920_110553466_110553562_110553794_110553862_110554180_110554242_110555510_110555665_110556037_110556234_110556478_110556574_110556745_110556865_110556965_110557077_110558662_110558798_110560605
ONT_simulated_read_314260	chr10	+	961	6	FSM	ENSMUSG00000037542.14	ENST00000367845.6	1304	6	6	337	6	-337	multi-exon	FALSE	canonical	NA	NA	NA	NA	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATAACAGACATTAAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	21253245	21271404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_21253378_21256728_21256877_21258190_21258347_21260534_21260685_21264966_21265224_21271286
ONT_simulated_read_3146485	chr6	-	449	3	ISM	ENSMUSG00000030304.12	ENSMUST00000136008.8	4174	14	121	25784	121	-25784	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGGCTTTATTAACAATAA	NA	NA	NA	NA	NA	NA	NA	NA	148113751	148106360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_148106383_148108030_148108174_148113467
ONT_simulated_read_3146928	chr6	-	1495	8	ISM	ENSMUSG00000045962.17	ENSMUST00000203030.3	8163	26	81489	24137	7563	13550	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCATCCCTTCCACTTAG	NA	NA	NA	NA	NA	NA	NA	NA	119933131	119925718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_119926381_119926968_119927092_119927203_119927262_119927459_119927634_119927975_119928093_119928595_119928759_119928858_119928957_119933031
ONT_simulated_read_3147240	chr2	-	536	5	ISM	ENSMUSG00000033808.17	ENSMUST00000110729.2	1578	16	18187	12147	18178	-12147	internal_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGTCCTCAGAGTTACAG	NA	NA	NA	NA	NA	NA	NA	NA	120216372	120205921	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254
ONT_simulated_read_3147685	chr11	-	1781	8	ISM	ENSMUSG00000041654.16	ENSMUST00000071539.10	2664	10	6216	674	6216	-674	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAATGATATTCAGGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	113450366	113136352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336
ONT_simulated_read_3148081	chr14	-	649	5	ISM	ENSMUSG00000041594.19	ENST00000328767.9	2047	15	45362	6	45362	-6	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTATTCTATTGTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	123170344	123157317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231
ONT_simulated_read_3148470	chr7	+	1695	19	ISM	ENSMUSG00000110195.2	ENST00000418754.6	2843	27	134	3770	134	-3770	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACGCCTTCTCTGTCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	101071052	101157267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_101071203_101100608_101100676_101149594_101149655_101150183_101150326_101150816_101150870_101151060_101151136_101151220_101151263_101151740_101151810_101152018_101152150_101152505_101152618_101153030_101153071_101153178_101153243_101153584_101153658_101153777_101153956_101154163_101154277_101155125_101155204_101156302_101156426_101156883_101156955_101157213
ONT_simulated_read_3149263	chr9	+	622	1	NIC	ENSMUSG00000010051.16	novel	2706	5	NA	NA	3127	-240	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTAGGTAGGGACG	NA	NA	NA	NA	NA	NA	NA	NA	107457315	107457937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_107457300_107457900
ONT_simulated_read_3149406	chr19	-	1044	7	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	16959	7754	16959	-7754	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAGAGCAAAACGGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	60762122	60757308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944
ONT_simulated_read_3151948	chr16	+	486	3	ISM	ENSMUSG00000022545.14	ENSMUST00000023206.14	3480	11	251	26641	29	-26166	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTCACCGACAACGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	12927798	12939957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_12928006_12929594_12929776_12939859
ONT_simulated_read_3153859	chr3	+	1560	4	ISM	ENSMUSG00000028164.16	ENSMUST00000029814.10	3675	17	77580	190	77580	-190	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGCAAAAAATGTTAATAAGT	NA	NA	NA	NA	NA	NA	NA	NA	135268951	135276975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_135269111_135272248_135272392_135273224_135273483_135275975
ONT_simulated_read_3155286	chr12	-	1995	9	ISM	ENSMUSG00000004698.12	ENSMUST00000239340.2	4110	10	91133	1886	0	-2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGAAGGTAGTCTGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	34487306	34423381	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_34424138_34439243_34439462_34440140_34440352_34443281_34443405_34452750_34452867_34479496_34479619_34481861_34481989_34483079_34483231_34487135
ONT_simulated_read_3157635	chr7	+	417	4	ISM	ENSMUSG00000030890.17	ENSMUST00000163389.9	1749	13	8	2370	8	-2335	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGCAATGTGCCACTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	105385939	105389759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105386014_105386307_105386445_105389383_105389550_105389719
ONT_simulated_read_3159772	chr2	+	276	1	ISM	ENSMUSG00000048482.15	ENSMUST00000111045.9	3973	2	0	33169	0	-33169	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGGACCAGAAGCGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	109523907	109524183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_109523900_109524200
ONT_simulated_read_3160625	chr8	-	223	1	ISM	ENSMUSG00000043687.17	ENSMUST00000123927.9	844	4	25485	183	25485	16	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCCGGCTTGGTGAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	121335746	121335523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_121335500_121335700
ONT_simulated_read_3162367	chr9	-	634	2	ISM	ENSMUSG00000070283.5	ENSMUST00000074208.6	1487	5	1181	0	1181	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATACTGGATCTGTTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	108443452	108442735	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_108443275_108443357
ONT_simulated_read_3164836	chr4	-	1335	1	ISM	ENSMUSG00000064141.15	ENSMUST00000106280.8	2362	6	20228	0	17963	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACTGATTTACAGATTAG	NA	NA	NA	NA	NA	NA	NA	NA	120788668	120787333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_120787300_120788700
ONT_simulated_read_3166368	chr3	-	911	1	FSM	ENSMUSG00000050533.4	ENSMUST00000056409.4	598	1	0	-313	0	313	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTGAATATCTTTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	39413052	39412141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_39412100_39413100
ONT_simulated_read_3166956	chr17	-	660	5	ISM	ENSMUSG00000039414.11	ENSMUST00000097281.4	6388	36	22069	50622	20990	-50587	internal_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCAATGTACCGTGGGTA	NA	NA	NA	NA	NA	NA	NA	NA	79120684	79110948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_79110991_79113375_79113536_79115758_79115950_79117936_79118043_79120523
ONT_simulated_read_3167606	chr3	-	2020	13	ISM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	13608	2268	13545	-2268	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCTTCTTCAACCCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	104712013	104704419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793
ONT_simulated_read_3170375	chr11	-	700	3	ISM	ENSMUSG00000020472.15	ENSMUST00000013262.15	4064	10	2405	17400	-427	-15856	internal_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGCAGTCTGTAGTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	59395065	59393745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_59393927_59394209_59394637_59394973
ONT_simulated_read_3170941	chr3	-	247	1	ISM	ENSMUSG00000034317.15	ENSMUST00000107802.8	2939	3	6772	2449	6772	-2449	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCCAGATGTTGTCACCT	NA	NA	NA	NA	NA	NA	NA	NA	68945316	68945069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_68945100_68945300
ONT_simulated_read_3171020	chr17	-	325	3	ISM	ENSMUSG00000062753.15	ENSMUST00000232276.2	860	5	1255	56	1255	-52	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTCCAGATGTATAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	27783385	27782798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_27782991_27783122_27783229_27783358
ONT_simulated_read_3171871	chr16	+	1283	5	ISM	ENSMUSG00000022750.19	ENSMUST00000120488.3	2596	7	0	9109	0	-9091	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTAGTGGGCAAGTACATC	NA	NA	NA	NA	NA	NA	NA	NA	17580654	17602137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_17580719_17582247_17582511_17589567_17589734_17594265_17594985_17602066
ONT_simulated_read_3173303	chr19	+	726	8	ISM	ENSMUSG00000025001.12	ENSMUST00000025965.12	5868	22	475	25607	475	-25607	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGTTCAGTGCATTGC	NA	NA	NA	NA	NA	NA	NA	NA	38919833	38933888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_38919957_38923857_38923981_38926849_38926907_38928914_38928952_38929040_38929106_38930897_38930937_38932157_38932386_38933834
ONT_simulated_read_3173375	chr9	-	321	3	ISM	ENSMUSG00000034007.11	ENSMUST00000037408.9	5158	31	175948	106056	175948	-105172	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTAATGGACCTCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	55650941	55563222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_55563313_55593163_55593280_55650826
ONT_simulated_read_3173438	chr8	-	135	1	ISM	ENSMUSG00000002343.12	ENSMUST00000019679.12	2263	8	13620	540	13620	-540	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCGTGAACTGTGGACA	NA	NA	NA	NA	NA	NA	NA	NA	70673496	70673361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70673400_70673500
ONT_simulated_read_3174942	chr11	+	2239	1	FSM	ENSMUSG00000048878.7	ENSMUST00000053063.7	3495	1	0	1256	0	-1256	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGCAAAAATACTTGAATA	NA	NA	NA	NA	NA	NA	NA	NA	103007056	103009295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_103007100_103009300
ONT_simulated_read_3177197	chr14	-	488	1	NIC	ENSMUSG00000061244.15	novel	12699	18	NA	NA	69	-52342	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGCGGCGGGGGAGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	49304041	49303553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_49303600_49304000
ONT_simulated_read_318029	chr9	+	396	4	ISM	ENSMUSG00000032383.8	ENSMUST00000034947.7	892	5	0	1119	0	-1117	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGCTTCCCAGATGAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	65967512	65972786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_65967683_65968748_65968863_65970270_65970365_65972768
ONT_simulated_read_3181802	chr8	+	1261	7	ISM	ENSMUSG00000054823.18	ENSMUST00000139966.8	5261	23	97686	455	5826	-177	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTTGCTGGTGTCTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	26189985	26204542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_26190052_26190478_26190749_26196551_26196669_26199089_26199232_26200699_26200807_26203384_26203587_26204185
ONT_simulated_read_3182242	chr18	+	1116	5	ISM	ENSMUSG00000073563.4	ENST00000361991.6	2226	12	36497	186	36497	-186	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTGCAGCTGCAGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	54065315	54087037	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_54065412_54066521_54066618_54069924_54070021_54081119_54081227_54086316
ONT_simulated_read_3182788	chr12	-	404	2	ISM	ENSMUSG00000062352.16	ENSMUST00000173729.8	1701	7	14529	611	14529	584	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACAAAAGAGAAGCCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	21321569	21320704	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_21320959_21321419
ONT_simulated_read_3183396	chr16	+	812	5	FSM	ENSMUSG00000005982.15	ENST00000421765.7	866	5	54	0	9	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATACTGGTCATCAACAG	NA	NA	NA	NA	NA	NA	NA	NA	3702531	3719969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3719639
ONT_simulated_read_3184195	chr2	-	769	1	Genic_Genomic	ENSMUSG00000081999.4	novel	NA	NA	NA	NA	832	244	mono-exon	FALSE	NA	NA	NA	NA	NA	1808	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTCCCATCGCAATATC	NA	NA	NA	NA	NA	NA	NA	NA	41878009	41877240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr2_-_41877200_41878000
ONT_simulated_read_3187273	chr17	+	427	5	ISM	ENSMUSG00000024312.11	ENSMUST00000025170.11	2229	15	745	6082	745	-6082	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAACCAAGGCATCGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	34160378	34162589	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531
ONT_simulated_read_3187774	chr19	+	814	1	FSM	ENSMUSG00000094388.2	ENSMUST00000159764.2	522	1	0	-292	0	292	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATGTACTCCTGTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	40610903	40611717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_40610900_40611700
ONT_simulated_read_3192393	chr18	+	203	2	ISM	ENSMUSG00000024537.6	ENSMUST00000025418.4	1059	7	9	9779	7	-9779	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTATTTCTATACTGATTG	NA	NA	NA	NA	NA	NA	NA	NA	67774677	67777453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_67774806_67777378
ONT_simulated_read_3193835	chr12	-	571	7	ISM	ENSMUSG00000021038.18	ENST00000327028.8	1417	18	17765	50	17765	-50	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACTTTTCTTTCTGCCTA	NA	NA	NA	NA	NA	NA	NA	NA	87293006	87286557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902
ONT_simulated_read_3194938	chr11	+	451	2	FSM	ENSMUSG00000000282.13	ENST00000575394.1	602	2	31	120	31	-120	multi-exon	FALSE	canonical	NA	NA	NA	NA	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTATGAGCATGAGATGG	NA	NA	NA	NA	NA	NA	NA	NA	74721796	74733006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_74722228_74732986
ONT_simulated_read_3195380	chr1	-	489	4	ISM	ENSMUSG00000026637.15	ENSMUST00000195815.3	2214	11	204	17773	204	-17773	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTATCCTTGAGACCCAT	NA	NA	NA	NA	NA	NA	NA	NA	191776664	191746940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_191747044_191751193_191751252_191754716_191754936_191776555
ONT_simulated_read_3196894	chr6	-	1885	4	ISM	ENSMUSG00000039985.15	ENSMUST00000204435.3	2785	7	12884	468	2498	-468	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGAGAAGCCACAGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	148832149	148823022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048
ONT_simulated_read_3198753	chr16	+	1917	17	ISM	ENSMUSG00000022770.18	ENST00000452595.5	3035	21	37311	275	36988	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCTCCACACTGACACAG	NA	NA	NA	NA	NA	NA	NA	NA	31610588	31690666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31666453_31666488_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ONT_simulated_read_3201305	chr18	-	1113	4	ISM	ENSMUSG00000063889.17	ENSMUST00000154135.8	2530	8	42340	963	4304	-55	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTCTCTCTGTCATGAAT	NA	NA	NA	NA	NA	NA	NA	NA	3295148	3267318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_3268130_3273421_3273579_3276693_3276730_3295039
ONT_simulated_read_3202308	chr8	-	425	1	NIC	ENSMUSG00000062991.10	novel	5846	13	NA	NA	96950	1	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCCTTCAGGTGTACCCT	NA	NA	NA	NA	NA	NA	NA	NA	32311469	32311044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_32311000_32311500
ONT_simulated_read_3203131	chr14	-	1116	1	NIC	ENSMUSG00000021973.10	novel	2329	12	NA	NA	81886	0	mono-exon	FALSE	NA	NA	NA	NA	NA	566	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTCTCTCATCCATTC	NA	NA	NA	NA	NA	NA	NA	NA	58154833	58153717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_58153700_58154800
ONT_simulated_read_3203977	chr1	-	774	6	ISM	ENSMUSG00000026035.16	ENSMUST00000117069.8	1363	7	253	3336	193	-543	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTGTCATCTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	58484335	58473488	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58483969
ONT_simulated_read_3205178	chr10	-	275	4	ISM	ENSMUSG00000090841.3	ENSMUST00000217776.2	562	7	-30	1372	0	-1372	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAGAACAAGGACCAGGGA	NA	NA	NA	NA	NA	NA	NA	NA	128329723	128328214	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128328272_128328470_128328615_128329407_128329436_128329677
ONT_simulated_read_3205872	chr11	-	225	3	ISM	ENSMUSG00000020311.18	ENST00000378239.5	2196	13	19117	806	19117	-806	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGATTGAAAATCATCACT	NA	NA	NA	NA	NA	NA	NA	NA	30885032	30881750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_30881849_30884671_30884748_30884981
ONT_simulated_read_3206079	chr11	-	1078	6	ISM	ENSMUSG00000042032.14	ENSMUST00000040167.11	1949	7	5002	551	5002	-551	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	240	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGACTTTCTGTGGATT	NA	NA	NA	NA	NA	NA	NA	NA	40578599	40570691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427
ONT_simulated_read_3208713	chr8	-	718	4	NNC	ENSMUSG00000048400.14	novel	1501	6	NA	NA	-129	-6193	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGCAGGATGGAATCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	96302212	96292112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_-_96292338_96297631_96297808_96301764_96301860_96301990
ONT_simulated_read_3209275	chr14	-	169	1	ISM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	29	10090	29	-10090	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGATTGCAGCGGCGACG	NA	NA	NA	NA	NA	NA	NA	NA	52542556	52542387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52542400_52542600
ONT_simulated_read_3209420	chr1	-	1390	10	ISM	ENSMUSG00000010609.16	ENSMUST00000010753.14	2004	11	193	527	0	-88	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGATGCAGGTGTATAGTT	NA	NA	NA	NA	NA	NA	NA	NA	180073322	180055097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_180055294_180056407_180056527_180056950_180057053_180057406_180057491_180061175_180061275_180062553_180062775_180063475_180063544_180066437_180066580_180068295_180068511_180073178
ONT_simulated_read_3209965	chr5	-	630	5	ISM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	8043	3761	-233	-3761	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGGAGCACGTTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	129856470	129846382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_129846449_129847669_129847805_129848539_129848697_129856085_129856313_129856425
ONT_simulated_read_32118	chr1	-	523	5	ISM	ENSMUSG00000079550.10	ENST00000409474.8	1549	13	558	22484	558	-22484	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGCAGAGACCACGAACT	NA	NA	NA	NA	NA	NA	NA	NA	59188255	59182894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_59182980_59183812_59184010_59185500_59185573_59185905_59185992_59188172
ONT_simulated_read_3212550	chr7	-	241	3	ISM	ENSMUSG00000063808.15	ENSMUST00000079693.12	3065	20	11160	26846	11160	-26846	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTGGCCTACAAGGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	35006705	35002806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_35002897_35005354_35005414_35006613
ONT_simulated_read_3212574	chr5	-	2748	13	ISM	ENSMUSG00000029090.13	ENSMUST00000030971.7	4480	19	52071	801	52071	-801	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTCGAACAAACGTGCAC	NA	NA	NA	NA	NA	NA	NA	NA	50164277	50118098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_50118857_50118989_50119086_50121032_50121179_50128031_50128156_50129292_50129418_50136284_50136494_50136701_50136916_50144815_50145020_50147466_50147629_50155556_50155713_50156474_50156677_50159196_50159362_50164090
ONT_simulated_read_321264	chr10	+	951	6	ISM	ENSMUSG00000034771.16	ENST00000443826.7	2010	17	11288	36	11288	-36	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	373	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGCCACTGTGTATGAGG	NA	NA	NA	NA	NA	NA	NA	NA	81422925	81426135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_81423176_81423386_81423635_81423707_81423856_81424642_81424794_81425253_81425331_81426058
ONT_simulated_read_3213280	chr17	-	2912	1	ISM	ENSMUSG00000094441.3	ENSMUST00000008830.10	3544	4	12209	307	12209	-307	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGGTGTTAAGTCTACT	NA	NA	NA	NA	NA	NA	NA	NA	33461910	33458998	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_33459000_33461900
ONT_simulated_read_3213370	chr13	-	703	4	ISM	ENSMUSG00000025878.17	ENSMUST00000026997.12	2931	15	14600	47729	-8241	-47273	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCTGGAGTAGATCCCAA	NA	NA	NA	NA	NA	NA	NA	NA	55233508	55223421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_55223808_55224114_55224221_55225215_55225341_55233422
ONT_simulated_read_3215671	chr2	-	1065	4	ISM	ENSMUSG00000027472.15	ENSMUST00000028972.9	1273	5	1356	0	1356	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGTTGTCACCCACC	NA	NA	NA	NA	NA	NA	NA	NA	152855991	152850809	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_152851657_152852177_152852259_152854300_152854376_152855929
ONT_simulated_read_3223557	chr7	-	426	1	ISM	ENSMUSG00000092490.8	ENSMUST00000172746.8	1644	6	6090	489	5891	-59	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCTTCAAGCACAACTG	NA	NA	NA	NA	NA	NA	NA	NA	8859760	8859334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_8859300_8859800
ONT_simulated_read_3226764	chr3	+	1928	10	ISM	ENSMUSG00000040389.16	ENST00000361054.7	3999	14	27443	2433	27443	-2433	internal_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGAGACTGGCTCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	108526168	108550597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_108526609_108530641_108530766_108531872_108532052_108534518_108534777_108537007_108537084_108540376_108540535_108544306_108544477_108545208_108545380_108545941_108546074_108550377
ONT_simulated_read_3227791	chr7	-	311	2	ISM	ENSMUSG00000003099.12	ENST00000391919.1	1878	12	5160	10809	5160	-10809	internal_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGCCATTGCGGGTGACG	NA	NA	NA	NA	NA	NA	NA	NA	16756567	16749387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_16749471_16756339
ONT_simulated_read_3229654	chr6	+	1983	15	ISM	ENSMUSG00000030314.17	ENSMUST00000182902.8	2543	21	37033	-6	37033	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGGTCCTTCCATGTGC	NA	NA	NA	NA	NA	NA	NA	NA	114657122	114836191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
ONT_simulated_read_3232126	chr5	-	693	7	ISM	ENSMUSG00000002944.16	ENST00000538969.5	1246	11	14084	2572	14084	-2572	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCAACATATTGGTCAAGC	NA	NA	NA	NA	NA	NA	NA	NA	18019809	17993285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_17993324_18000576_18000696_18001993_18002182_18003226_18003297_18016178_18016226_18018010_18018103_18019670
ONT_simulated_read_3233250	chr7	+	1216	10	FSM	ENSMUSG00000025133.10	ENST00000587624.6	1260	10	44	0	44	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTATTTTGTAACTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	97150985	97180019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97178420_97178502_97179958
ONT_simulated_read_3234864	chr2	-	788	7	ISM	ENSMUSG00000038324.14	ENSMUST00000041059.12	3204	19	38708	5233	38656	-5196	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTCCTGCTGAAGCGAG	NA	NA	NA	NA	NA	NA	NA	NA	155495596	155481423	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155481484_155482393_155482478_155483508_155483611_155485311_155485371_155486847_155486980_155492338_155492506_155495412
ONT_simulated_read_3235105	chr14	-	282	1	ISM	ENSMUSG00000043702.10	ENSMUST00000052932.10	7725	3	3936	5708	3613	-394	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTGACTTAAATACTTT	NA	NA	NA	NA	NA	NA	NA	NA	26387102	26386820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_26386800_26387100
ONT_simulated_read_3236748	chr16	-	3076	15	ISM	ENSMUSG00000022789.16	ENSMUST00000115749.3	3893	20	21518	428	21518	-428	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTATCTTTAGTTTATGA	NA	NA	NA	NA	NA	NA	NA	NA	16154879	16130529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716
ONT_simulated_read_323692	chr5	-	1912	1	ISM	ENSMUSG00000062604.12	ENSMUST00000088392.9	6491	15	108850	2509	108850	-2509	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTATAGAGCCTATGACAAA	NA	NA	NA	NA	NA	NA	NA	NA	23712682	23710770	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_23710800_23712700
ONT_simulated_read_3238981	chr7	+	355	3	ISM	ENSMUSG00000061286.8	ENSMUST00000079634.8	1020	6	54	3631	27	-3631	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCTCAATCACCGTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	25358642	25363826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_25358809_25362561_25362676_25363751
ONT_simulated_read_3243162	chr6	-	290	1	ISM	ENSMUSG00000029810.16	ENSMUST00000166247.8	1414	7	7255	12	6861	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATACCCTCTCACAGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	48811053	48810763	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_48810800_48811100
ONT_simulated_read_3244013	chr15	-	1054	11	ISM	ENSMUSG00000009733.10	ENST00000548115.5	1667	12	394	590	334	-590	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGGGAGCAGCAGCCGCA	NA	NA	NA	NA	NA	NA	NA	NA	100449334	100410165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205
ONT_simulated_read_3246216	chr2	+	813	5	ISM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	6799	1943	6746	-1943	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAATGGTCATTTAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	73149743	73166219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_73149844_73152328_73152539_73160106_73160270_73161326_73161502_73166054
ONT_simulated_read_3247812	chr5	-	611	4	ISM	ENSMUSG00000041740.17	ENST00000413266.6	2636	17	20951	7617	20951	-7617	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTGTGCCCATCACAACG	NA	NA	NA	NA	NA	NA	NA	NA	115389521	115387454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_115387582_115388028_115388190_115389124_115389262_115389335
ONT_simulated_read_3248500	chr6	+	946	9	ISM	ENSMUSG00000030269.15	ENSMUST00000113146.9	2676	19	28162	611	10158	-417	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAAGCTGACAGCCCACA	NA	NA	NA	NA	NA	NA	NA	NA	113242965	113257742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113254750_113254907_113257563
ONT_simulated_read_3249555	chr6	-	251	1	ISM	ENSMUSG00000030042.16	ENSMUST00000160281.8	648	4	30768	0	30768	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACATGTGTGGTATGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	82599083	82598832	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_82598800_82599100
ONT_simulated_read_3250655	chr19	-	1631	13	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	7078	-1279	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCTCTGTGGTTGAATG	NA	NA	NA	NA	NA	NA	NA	NA	27400147	27367376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397518_27398696_27398872_27399754_27399822_27400053
ONT_simulated_read_325353	chr5	+	980	6	ISM	ENSMUSG00000029004.16	ENSMUST00000094962.9	7252	26	8	32454	0	-32454	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGCCGGAAAAGAGAAAATAT	NA	NA	NA	NA	NA	NA	NA	NA	23639446	23676779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745
ONT_simulated_read_3254982	chr4	+	1462	7	ISM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	2181	142	2181	-142	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGGTTCAACTCTGGTCA	NA	NA	NA	NA	NA	NA	NA	NA	132497826	132505921	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503667_132503963_132504059_132505100
ONT_simulated_read_3256357	chr7	+	761	5	ISM	ENSMUSG00000004056.16	ENSMUST00000051356.12	2923	14	30195	1152	27391	131	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGCGGCCCTCTCCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	27335477	27337726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
ONT_simulated_read_3257583	chr17	+	1805	10	ISM	ENSMUSG00000067629.14	ENST00000645250.1	4029	18	0	10861	0	-7886	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTCTTGTATGAGATAT	NA	NA	NA	NA	NA	NA	NA	NA	27171292	27178974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_27171411_27171535_27171628_27172003_27172126_27173901_27174056_27174246_27174346_27175956_27176581_27176706_27176852_27177050_27177196_27178582_27178820_27178905
ONT_simulated_read_326099	chr2	-	1426	14	ISM	ENSMUSG00000026970.17	ENSMUST00000112509.2	1806	15	39025	0	38993	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	151	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGGAAAAAAAATCAAAGATT	NA	NA	NA	NA	NA	NA	NA	NA	60672789	60583065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60590102_60590151_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640
ONT_simulated_read_3261803	chr9	+	942	6	ISM	ENSMUSG00000032123.6	ENSMUST00000054708.5	2205	9	28	1955	28	-1283	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGGGCATGACTTTTGCCG	NA	NA	NA	NA	NA	NA	NA	NA	44238169	44243242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_44238503_44238848_44238970_44239249_44239464_44240287_44240435_44242414_44242500_44243200
ONT_simulated_read_3262737	chr14	-	192	1	Genic_Genomic	ENSMUSG00000042286.14	novel	NA	NA	NA	NA	24224	1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTTCATGCAGCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	30861160	30860968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr14_-_30861000_30861200
ONT_simulated_read_3264776	chr15	-	680	1	ISM	ENSMUSG00000023044.3	ENSMUST00000023805.3	2279	15	11290	90	11207	-90	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTCTCAGACCTTTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	102086203	102085523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_102085500_102086200
ONT_simulated_read_3264798	chr4	-	751	1	ISM	ENSMUSG00000028706.15	ENSMUST00000030475.3	2439	6	19575	709	19079	356	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTCTAATTTAAGGAATAAG	NA	NA	NA	NA	NA	NA	NA	NA	115891498	115890747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_115890700_115891500
ONT_simulated_read_3266377	chr19	+	823	5	ISM	ENSMUSG00000047656.10	ENSMUST00000088223.7	1103	7	0	495	0	-454	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAGCCCTCACAGGTAGGT	NA	NA	NA	NA	NA	NA	NA	NA	6973539	6975919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876
ONT_simulated_read_3268989	chr15	+	953	6	ISM	ENSMUSG00000022434.9	ENSMUST00000023069.9	2518	9	36	9087	36	-9087	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGATATGCTTTTGCATG	NA	NA	NA	NA	NA	NA	NA	NA	84921325	84937944	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771
ONT_simulated_read_3269261	chrX	-	1473	11	ISM	ENSMUSG00000031333.8	ENST00000620875.5	1896	13	24	10500	24	-10500	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCCATTTTGAAGAATCC	NA	NA	NA	NA	NA	NA	NA	NA	103386165	103338148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_103338178_103339436_103339609_103343374_103343505_103343655_103343820_103344376_103344535_103345399_103345575_103346557_103346646_103346734_103346824_103347737_103348007_103348875_103349009_103386099
ONT_simulated_read_3269725	chr13	+	778	4	ISM	ENSMUSG00000035139.15	ENSMUST00000040117.15	3328	17	28036	555	27992	-555	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAATTCACTGGGCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	51833768	51837525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_51833990_51836035_51836191_51836479_51836670_51837313
ONT_simulated_read_3270082	chr7	-	909	1	ISM	ENSMUSG00000109324.3	ENSMUST00000207370.2	2147	10	9509	86	9336	-86	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTCTAGACCAGGCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	44626407	44625498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44625500_44626400
ONT_simulated_read_327126	chr5	+	347	4	ISM	ENSMUSG00000038722.18	ENSMUST00000162594.8	867	6	35	3131	0	-3124	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTCAGGATCCATCACC	NA	NA	NA	NA	NA	NA	NA	NA	145077206	145081757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_145077253_145078114_145078247_145079257_145079378_145081708
ONT_simulated_read_3272355	chr3	-	366	1	ISM	ENSMUSG00000000339.15	ENSMUST00000000348.15	1594	11	18880	0	18880	0	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGCTGCTGCTTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	116282977	116282611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_116282600_116283000
ONT_simulated_read_3272528	chr19	-	157	1	ISM	ENSMUSG00000024870.7	ENSMUST00000025804.7	1913	6	6529	1182	6433	1	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCTAGGAGGGGCACTT	NA	NA	NA	NA	NA	NA	NA	NA	5150571	5150414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5150400_5150600
ONT_simulated_read_3276358	chr9	-	961	1	ISM	ENSMUSG00000032131.17	ENST00000619701.5	3572	15	13753	327	13069	-327	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCCAAGCTGACACTCAC	NA	NA	NA	NA	NA	NA	NA	NA	44185772	44184811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44184800_44185800
ONT_simulated_read_3276790	chr16	+	1701	9	ISM	ENSMUSG00000022779.17	ENSMUST00000023465.16	3073	18	15863	0	15863	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	NA	NA	NA	NA	NA	NA	NA	16704507	16710854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ONT_simulated_read_3284029	chr14	+	282	1	ISM	ENSMUSG00000022010.20	ENSMUST00000110888.8	4999	5	3393	89127	2767	-87102	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCCAACAAACTTAGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	76655793	76656075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_76655800_76656100
ONT_simulated_read_3288874	chr6	-	741	5	ISM	ENSMUSG00000040649.16	ENST00000619374.4	1321	8	50	9213	50	-2384	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACTGAGTGAACAAGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	122449696	122433602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_122433623_122436050_122436255_122437919_122438007_122440936_122441168_122449497
ONT_simulated_read_3289489	chr8	-	1488	12	ISM	ENSMUSG00000036672.6	ENSMUST00000040776.6	1814	13	2131	142	2131	-142	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAATCATGAAGGTTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	106576555	106571450	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464
ONT_simulated_read_3290782	chr16	-	2551	18	ISM	ENSMUSG00000014039.19	ENST00000269844.5	3856	24	29905	246	29216	-246	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCCAGATCCACCCACAG	NA	NA	NA	NA	NA	NA	NA	NA	97623211	97595621	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_97595857_97596849_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604909_97605042_97607244_97607365_97607674_97607755_97608208_97608373_97608921_97609057_97609854_97609987_97612256_97612352_97613757_97613926_97617305_97617394_97617735_97617831_97618063_97618246_97619411_97619542_97622967
ONT_simulated_read_3292515	chr7	-	490	1	ISM	ENSMUSG00000030614.9	ENSMUST00000032843.9	2259	5	6840	1234	6840	-1234	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATGAACACATGTTATAAG	NA	NA	NA	NA	NA	NA	NA	NA	90118369	90117879	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_90117900_90118400
ONT_simulated_read_3293403	chr11	-	291	1	ISM	ENSMUSG00000020462.15	ENSMUST00000020754.10	1664	10	25435	152	25435	-152	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATCCTAGCACCCAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	29171974	29171683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_29171700_29172000
ONT_simulated_read_3295120	chr5	-	579	2	ISM	ENSMUSG00000001687.16	ENSMUST00000164904.2	2001	7	127	46836	0	-46836	intron_retention	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTCATGTCCCGGCGG	NA	NA	NA	NA	NA	NA	NA	NA	148489472	148488787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_148488861_148488966
ONT_simulated_read_3296014	chr11	-	597	3	ISM	ENSMUSG00000069631.15	ENST00000640679.1	1767	11	25067	463	4920	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATCACCAGGGACTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	106059282	106054673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106055018_106058637_106058743_106059134
ONT_simulated_read_32962	chr15	-	1230	1	NIC	ENSMUSG00000018042.19	novel	1982	9	NA	NA	15454	0	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCAGCGTTTCTCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	83038924	83037694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_83037700_83038900
ONT_simulated_read_329692	chr2	-	551	6	ISM	ENSMUSG00000036591.17	ENST00000376410.7	6848	24	52889	33759	-31483	-31492	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTACCGAACAAACAGCAAAC	NA	NA	NA	NA	NA	NA	NA	NA	20919591	20886512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_20886663_20891916_20891972_20894685_20894765_20896895_20896989_20917087_20917113_20919442
ONT_simulated_read_3297020	chr8	-	672	5	ISM	ENSMUSG00000004319.16	ENSMUST00000110302.8	3768	13	13334	21289	5	-4135	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTAGGAAAAGAAGGTCCC	NA	NA	NA	NA	NA	NA	NA	NA	61394448	61386218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290
ONT_simulated_read_329804	chr19	-	1447	1	ISM	ENSMUSG00000039901.11	ENSMUST00000045396.9	3676	26	179541	137	179541	-137	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTCATCTCTAATCACGG	NA	NA	NA	NA	NA	NA	NA	NA	45807386	45805939	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_45805900_45807400
ONT_simulated_read_3298968	chr11	-	389	3	ISM	ENSMUSG00000025377.15	ENSMUST00000093901.12	2770	13	4456	2948	4456	-2948	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGACACAGGGGCCACG	NA	NA	NA	NA	NA	NA	NA	NA	119985101	119984304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_119984357_119984516_119984692_119984939
ONT_simulated_read_3299207	chr5	-	617	1	ISM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	4194	161	4152	-161	mono-exon	FALSE	NA	NA	NA	NA	NA	2580	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCAGGTGGCTGCGTAGGT	NA	NA	NA	NA	NA	NA	NA	NA	117421496	117420879	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_117420900_117421500
ONT_simulated_read_3301055	chr2	-	1091	1	ISM	ENSMUSG00000017707.10	ENSMUST00000017851.4	3683	10	19570	1199	19570	-1199	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTCCCAAATCAATCTGA	NA	NA	NA	NA	NA	NA	NA	NA	163467481	163466390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_163466400_163467500
ONT_simulated_read_3301543	chr13	-	607	5	ISM	ENSMUSG00000037960.12	ENSMUST00000048946.7	804	6	7904	83	7904	-83	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	589	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTATTTTTCATTATTTAT	NA	NA	NA	NA	NA	NA	NA	NA	49361598	49356509	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_49356712_49357193_49357266_49357404_49357465_49358667_49358822_49361479
ONT_simulated_read_3301747	chr1	+	1020	8	ISM	ENSMUSG00000032883.16	ENST00000679541.1	3090	14	32430	5653	32380	-5528	internal_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCTTTGAAGATGAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	78667979	78679090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78678985
ONT_simulated_read_3303008	chr6	-	773	5	ISM	ENSMUSG00000004980.17	ENSMUST00000203220.3	1638	11	4530	112	4530	-112	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGATCATGGTGTAATAAGA	NA	NA	NA	NA	NA	NA	NA	NA	51442222	51439851	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158
ONT_simulated_read_3303549	chr8	+	1406	8	ISM	ENSMUSG00000070002.8	ENSMUST00000093454.8	3072	12	0	6857	0	-6857	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTGCACTACCGCCAGAT	NA	NA	NA	NA	NA	NA	NA	NA	70992337	71038651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70992492_71025512_71025561_71031486_71031609_71031742_71031907_71034204_71034471_71036521_71036647_71037806_71037886_71038203
ONT_simulated_read_3304524	chr3	+	961	7	ISM	ENSMUSG00000042626.14	ENSMUST00000094378.10	2617	12	2898	658	2860	-658	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATCCTTCTCAGCTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	89331832	89335748	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
ONT_simulated_read_3306078	chr2	+	442	1	FSM	ENSMUSG00000078201.6	ENSMUST00000104998.5	854	1	0	412	0	-412	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTCCAAGATGGGGAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	25145450	25145892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_25145400_25145900
ONT_simulated_read_3306369	chr9	-	1359	1	ISM	ENSMUSG00000035914.12	ENSMUST00000165365.3	3603	8	29101	680	14605	-678	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCCAACAACAGGCGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	58433619	58432260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_58432300_58433600
ONT_simulated_read_3306737	chr11	+	1276	11	NIC	ENSMUSG00000017781.18	novel	1665	12	NA	NA	40	-350	intron_retention	FALSE	non_canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTATGCCCTCCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	75478984	75517206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_75479179_75483014_75483046_75489005_75489155_75494214_75494316_75499930_75500006_75503045_75503130_75510065_75510144_75510281_75510393_75511079_75511203_75516290_75516357_75516942
ONT_simulated_read_3307681	chr10	+	1729	12	NIC	ENSMUSG00000058799.17	novel	1365	13	NA	NA	0	0	intron_retention	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCCTCTGCCTCACACT	NA	NA	NA	NA	NA	NA	NA	NA	111309141	111331254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111330031_111330155_111330655
ONT_simulated_read_3309674	chr1	-	1199	7	ISM	ENSMUSG00000025935.11	ENSMUST00000027068.11	2938	11	11752	1125	11752	-1125	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	164	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGGTAAAATGGAAATACTA	NA	NA	NA	NA	NA	NA	NA	NA	13648382	13636046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_13636621_13639694_13639856_13640162_13640307_13642026_13642132_13642227_13642299_13646591_13646677_13648323
ONT_simulated_read_330999	chr13	-	1847	5	ISM	ENSMUSG00000025872.6	ENSMUST00000026990.6	2335	6	866	180	866	-180	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	621	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTAGCATAGCATGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	54615796	54606829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614198_54615638
ONT_simulated_read_3311894	chr13	+	1356	14	ISM	ENSMUSG00000003992.16	ENST00000505980.5	1504	16	78161	0	78156	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGAACTCAGATGTTATGG	NA	NA	NA	NA	NA	NA	NA	NA	91687461	91849287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_91687516_91712728_91712814_91790420_91790511_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
ONT_simulated_read_3316061	chr2	-	941	1	NIC	ENSMUSG00000035949.16	novel	2030	7	NA	NA	15763	-225	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATGAATCCATTGTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	34697430	34696489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_34696500_34697400
ONT_simulated_read_3316131	chr10	-	491	1	ISM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	199286	155	38414	-152	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGAGGGTGGGGTGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	76598336	76597845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_76597800_76598300
ONT_simulated_read_3317723	chr3	+	897	9	ISM	ENSMUSG00000027714.12	ENSMUST00000029269.12	1617	12	45	3675	45	-3675	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGCAAACCAAAGAATCACA	NA	NA	NA	NA	NA	NA	NA	NA	36606799	36616201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_36606901_36607183_36607279_36607954_36608075_36608188_36608292_36608786_36608925_36609630_36609714_36611011_36611145_36615251_36615341_36616166
ONT_simulated_read_3320626	chr3	-	1043	3	ISM	ENSMUSG00000054942.14	ENSMUST00000199397.2	2842	4	2340	1666	2340	-1666	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGAGCACCTAGACTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	152043670	152038697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_152039255_152040888_152041067_152043362
ONT_simulated_read_332390	chr11	-	1155	12	ISM	ENSMUSG00000020792.16	ENST00000411744.6	1975	18	10767	0	10766	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCCAGTGTTTCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	116186516	116180008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369
ONT_simulated_read_3327152	chr1	+	708	6	ISM	ENSMUSG00000026377.13	ENSMUST00000027626.13	1889	7	15	1437	0	-556	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAGGAGAAGATGATGAA	NA	NA	NA	NA	NA	NA	NA	NA	118249583	118260115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_118249728_118251311_118251456_118255354_118255464_118257082_118257295_118258335_118258393_118260073
ONT_simulated_read_3327237	chr6	-	1979	1	ISM	ENSMUSG00000029684.15	ENSMUST00000031695.15	4352	11	48708	518	48687	-518	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGGGGGTATATTATTT	NA	NA	NA	NA	NA	NA	NA	NA	24616300	24614321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_24614300_24616300
ONT_simulated_read_3328110	chr3	-	2168	18	ISM	ENSMUSG00000028041.18	ENSMUST00000029676.12	2975	23	2931	275	2855	-27	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACCTCTGGAGATTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	89254372	89247221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_89247261_89247361_89247487_89247707_89247780_89248169_89248245_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183
ONT_simulated_read_3328458	chr6	-	152	1	ISM	ENSMUSG00000012535.15	ENSMUST00000115251.8	3989	23	68438	191	68430	-191	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGGAATGTATTTACAG	NA	NA	NA	NA	NA	NA	NA	NA	29541168	29541016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_29541000_29541200
ONT_simulated_read_3329006	chr7	+	1094	1	FSM	ENSMUSG00000070705.4	ENSMUST00000094651.4	1751	1	0	657	0	-657	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTACTTCTTGTGTTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	27977163	27978257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_27977200_27978300
ONT_simulated_read_3331406	chr7	-	1298	10	ISM	ENSMUSG00000007833.16	ENSMUST00000107815.4	2685	16	6528	2534	6501	-468	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTCCAGGCCCATCCAA	NA	NA	NA	NA	NA	NA	NA	NA	44797480	44794402	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307
ONT_simulated_read_3335159	chr11	-	1991	8	ISM	ENSMUSG00000041654.16	ENSMUST00000042657.16	2781	11	42182	501	42170	-501	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTTAAACTTCTGAGATG	NA	NA	NA	NA	NA	NA	NA	NA	113414412	113136179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113413726_113413832_113414291
ONT_simulated_read_3336782	chr2	+	1391	11	ISM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	87	13813	0	-13813	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCATCGCAGACAGCCATC	NA	NA	NA	NA	NA	NA	NA	NA	157121065	157154426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396
ONT_simulated_read_3337591	chrX	-	371	1	NIC	ENSMUSG00000031146.7	novel	1157	5	NA	NA	2883	-196	mono-exon	FALSE	NA	NA	NA	NA	NA	300	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTGTGGCCACCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	7534746	7534375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_7534400_7534700
ONT_simulated_read_3338826	chr1	-	1848	1	ISM	ENSMUSG00000026277.15	ENSMUST00000027498.14	4249	12	13223	901	13223	-901	mono-exon	FALSE	NA	NA	NA	NA	NA	499	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCACCTTTCAAATGTGT	NA	NA	NA	NA	NA	NA	NA	NA	93550221	93548373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_93548400_93550200
ONT_simulated_read_3338944	chr19	-	438	1	ISM	ENSMUSG00000024830.18	ENSMUST00000025749.15	4586	15	6176	2750	6107	245	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGGGATCCTAAAGGACCA	NA	NA	NA	NA	NA	NA	NA	NA	4207177	4206739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4206700_4207200
ONT_simulated_read_3341984	chr16	-	572	2	ISM	ENSMUSG00000048490.15	ENSMUST00000054178.8	4529	4	42184	3702	42184	-3702	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCCATTAACAAAAAGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	76127753	76091451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_76091904_76127633
ONT_simulated_read_334287	chr17	+	1049	10	ISM	ENSMUSG00000024319.19	ENSMUST00000025178.17	3383	20	5299	1062	5299	-1062	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATCCAGCTCTACCATCG	NA	NA	NA	NA	NA	NA	NA	NA	34180084	34184947	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34180219_34180586_34180743_34181040_34181160_34181396_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932
ONT_simulated_read_334299	chr9	+	888	3	ISM	ENSMUSG00000032059.14	ENSMUST00000034561.11	2873	15	33660	166	33660	-166	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCAAGACGTGGCTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	50719978	50754662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_50720107_50733884_50734016_50754033
ONT_simulated_read_3344695	chr11	-	321	2	ISM	ENSMUSG00000017176.18	ENST00000521789.5	513	4	3177	-1	3177	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGCCCACAAAGCCATCC	NA	NA	NA	NA	NA	NA	NA	NA	100323891	100320602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100320776_100323743
ONT_simulated_read_3344856	chr8	+	423	3	ISM	ENSMUSG00000006585.4	ENSMUST00000006760.3	2189	10	11	3787	11	-3787	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTGAGCTCCAGTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	123294764	123296080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_123295011_123295825_123295985_123296062
ONT_simulated_read_3348793	chr11	-	408	1	ISM	ENSMUSG00000018481.10	ENSMUST00000018625.10	6463	13	43245	4216	43245	-4216	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAGTTATATCAGCATGT	NA	NA	NA	NA	NA	NA	NA	NA	85082711	85082303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_85082300_85082700
ONT_simulated_read_3349211	chr2	+	1329	11	ISM	ENSMUSG00000042359.19	ENST00000409631.5	2995	22	44151	1415	44151	-1415	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGCCGCAGAGAAACAAAG	NA	NA	NA	NA	NA	NA	NA	NA	76398463	76425135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_76398587_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107
ONT_simulated_read_3349366	chrX	-	853	8	ISM	ENSMUSG00000036932.15	ENSMUST00000114945.9	2221	16	28024	756	27811	-713	internal_fragment	FALSE	canonical	NA	NA	NA	NA	782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCGCCCCTGCAGTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	47574412	47564576	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334
ONT_simulated_read_335244	chr12	+	1281	12	ISM	ENSMUSG00000021013.17	ENSMUST00000085109.10	2272	14	38	6777	0	-95	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTCAGGCTGGCCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	98886870	98942714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_98887043_98908476_98908598_98909561_98909626_98909720_98909881_98910083_98910174_98912827_98912873_98923539_98923626_98927660_98927749_98930755_98930867_98940900_98941041_98942235_98942411_98942685
ONT_simulated_read_3355941	chr3	+	632	5	NNC	ENSMUSG00000028180.19	novel	2924	10	NA	NA	0	-7627	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGCTCTCAGATATGTAT	NA	NA	NA	NA	NA	NA	NA	NA	157239796	157246346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_+_157240112_157241970_157242024_157242119_157242224_157243223_157243307_157246269
ONT_simulated_read_3358695	chr5	-	840	8	ISM	ENSMUSG00000029472.14	ENSMUST00000197074.5	2413	17	3315	11747	3315	-11739	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCACTGCAACAAGCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	122956028	122937532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_122937538_122938513_122938672_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883
ONT_simulated_read_3359317	chr16	+	730	7	ISM	ENSMUSG00000068663.15	ENSMUST00000115823.2	2643	15	29509	50943	29509	-4206	internal_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGCCAAGCAGCGCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	10447923	10509386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_10448019_10448620_10448666_10453109_10453161_10456650_10456780_10462624_10462746_10506343_10506496_10509249
ONT_simulated_read_3359639	chr16	+	1353	6	ISM	ENSMUSG00000022517.18	ENSMUST00000229038.2	2250	17	41410	-292	41292	292	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGCAGCTTCCATAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	4745541	4755577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4752058_4752104_4754759
ONT_simulated_read_3366465	chr4	+	998	9	ISM	ENSMUSG00000063524.14	ENSMUST00000080926.13	2027	12	291	1403	291	-1397	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGACGACTGGGGCGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	150321699	150331933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907
ONT_simulated_read_336685	chr1	+	1790	9	NNC	ENSMUSG00000049339.17	novel	2561	9	NA	NA	186	-570	intron_retention	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCATCCCTTGTCATTCT	NA	NA	NA	NA	NA	NA	NA	NA	75119623	75123983	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_+_75119773_75120012_75120120_75120566_75120598_75120947_75121084_75121265_75121351_75121603_75121748_75121902_75121995_75122323_75122460_75123073
ONT_simulated_read_336838	chrX	+	968	1	FSM	ENSMUSG00000050148.10	ENSMUST00000060714.10	3344	1	0	2376	0	-2376	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGCCAGGAATCCTGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	152281222	152282190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_152281200_152282200
ONT_simulated_read_3369097	chr11	-	296	1	NIC	ENSMUSG00000041126.17	novel	1633	5	NA	NA	15919	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1501	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTGTCTCAGTATTTC	NA	NA	NA	NA	NA	NA	NA	NA	6378433	6378137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_6378100_6378400
ONT_simulated_read_3372046	chr10	-	1962	15	ISM	ENSMUSG00000004356.9	ENST00000261637.5	8545	62	64931	504	64926	-504	internal_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCATAGAATTACTCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	88597740	88583255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_88583284_88584087_88584215_88585121_88585404_88586513_88586586_88587206_88587395_88588768_88588902_88589497_88589630_88590338_88590522_88590612_88590683_88591049_88591130_88592886_88592998_88593718_88593851_88594165_88594337_88596731_88596849_88597604
ONT_simulated_read_3375420	chr11	-	1683	1	ISM	ENSMUSG00000034621.15	ENSMUST00000143842.2	6871	8	74151	4451	74151	-4451	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTGAACCACCAACTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	102372874	102371191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_102371200_102372900
ONT_simulated_read_3377795	chr4	+	341	3	ISM	ENSMUSG00000028641.17	ENSMUST00000081606.7	2820	15	1512	11013	1512	-11012	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACTATAATTACCTACAG	NA	NA	NA	NA	NA	NA	NA	NA	119092540	119095157	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_119092596_119093973_119094164_119095061
ONT_simulated_read_338083	chr19	+	132	1	FSM	ENSMUSG00000067608.6	ENSMUST00000088040.6	781	1	0	649	0	-649	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTGGTGCAGCTTACT	NA	NA	NA	NA	NA	NA	NA	NA	9260743	9260875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_9260700_9260900
ONT_simulated_read_33855	chr18	+	502	5	ISM	ENSMUSG00000024483.20	ENST00000297183.10	7604	33	77740	15465	77633	-15465	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAGGAACAGAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	36771376	36776047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978
ONT_simulated_read_3386188	chr10	-	2198	1	ISM	ENSMUSG00000069662.6	ENSMUST00000092584.6	4048	2	2028	1320	2028	-1320	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAATTCATAATCAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	37012888	37010690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_37010700_37012900
ONT_simulated_read_3386206	chr7	+	1045	5	ISM	ENSMUSG00000033685.14	ENSMUST00000126534.8	3988	8	3859	2328	3859	-2328	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGAGGACCCCAGTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	100146402	100148899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
ONT_simulated_read_3386977	chr8	-	628	3	ISM	ENSMUSG00000033282.15	ENST00000262135.9	7197	24	39888	44401	39888	-44060	internal_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAGCAGAGTCCACAGAC	NA	NA	NA	NA	NA	NA	NA	NA	91997168	91987717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_91987752_91990136_91990289_91996726
ONT_simulated_read_3387102	chrX	-	435	1	ISM	ENSMUSG00000067377.13	ENSMUST00000087557.12	1765	8	6531	396	6531	-396	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGCCCATCAATGGCGT	NA	NA	NA	NA	NA	NA	NA	NA	132792647	132792212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_132792200_132792600
ONT_simulated_read_3389008	chr12	+	3268	10	ISM	ENSMUSG00000061911.16	ENST00000647755.1	5736	20	76110	3	11338	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	243	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGGGTCTGAGTCTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	29901546	29973212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_29901770_29904231_29904354_29905213_29905283_29936121_29936185_29943360_29943445_29945091_29945314_29960765_29960858_29964232_29964337_29969893_29970038_29971067
ONT_simulated_read_3390590	chr9	-	897	5	ISM	ENSMUSG00000040813.17	ENSMUST00000169068.8	1364	6	686	420	686	-414	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCGGGTGCCAGTGGCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	106562195	106536364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127
ONT_simulated_read_3390872	chr3	+	383	3	ISM	ENSMUSG00000068749.10	ENST00000538610.5	725	9	10845	-162	10845	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	572	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTAATAGTCTGTGATC	NA	NA	NA	NA	NA	NA	NA	NA	108176190	108187290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_108176247_108179606_108179694_108187050
ONT_simulated_read_3392339	chr10	+	909	6	ISM	ENSMUSG00000038332.14	ENSMUST00000041438.7	2600	10	10934	894	10934	-894	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCACTCGGCAGCTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	41774368	41783526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_41774422_41778524_41778673_41779687_41779801_41781169_41781361_41782331_41782477_41783267
ONT_simulated_read_3392929	chr11	-	143	1	ISM	ENSMUSG00000042208.16	ENSMUST00000043356.13	4392	20	53535	2099	53535	-1447	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAGGTGTTCTATTAGTT	NA	NA	NA	NA	NA	NA	NA	NA	23525492	23525349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_23525300_23525500
ONT_simulated_read_3392981	chr9	+	148	1	ISM	ENSMUSG00000084786.10	ENSMUST00000129414.9	2114	5	0	3499	0	-3304	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAACCCAGAAACCATGACT	NA	NA	NA	NA	NA	NA	NA	NA	20554613	20554761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_20554600_20554800
ONT_simulated_read_339323	chr15	-	3457	24	ISM	ENSMUSG00000022607.19	ENST00000519419.5	4213	31	55790	-236	38814	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCATTGCCTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	73176396	73076950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255
ONT_simulated_read_339435	chr3	-	568	2	ISM	ENSMUSG00000004896.17	ENSMUST00000160074.8	1620	7	2837	778	2837	-653	internal_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTGGCCTTCTTCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	87832728	87831742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_87831836_87832253
ONT_simulated_read_339549	chr1	-	865	7	ISM	ENSMUSG00000026309.15	ENSMUST00000027534.13	1368	12	13437	0	13364	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	230	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGAGTGACTGGTCC	NA	NA	NA	NA	NA	NA	NA	NA	91313068	91303552	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961
ONT_simulated_read_3395658	chr13	-	634	1	NIC	ENSMUSG00000021592.19	novel	3657	8	NA	NA	36057	-1548	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACCTCTGACAGTTTAAC	NA	NA	NA	NA	NA	NA	NA	NA	76210722	76210088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_76210100_76210700
ONT_simulated_read_3395849	chr15	+	728	8	ISM	ENSMUSG00000003352.15	ENSMUST00000109150.9	2513	13	5	3070	5	-3070	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTGCCCTGGTCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	98530261	98539340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_98530402_98537368_98537492_98537694_98537818_98538219_98538336_98538566_98538632_98538839_98538860_98539057_98539139_98539280
ONT_simulated_read_3397956	chr16	+	1851	13	ISM	ENSMUSG00000003235.14	ENSMUST00000003320.14	2554	16	0	2295	0	-2295	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAAGTGATGCAGGTCC	NA	NA	NA	NA	NA	NA	NA	NA	20317566	20325778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323948_20324091_20324211_20324314_20324877_20324986_20325130_20325222_20325757
ONT_simulated_read_3399308	chr6	-	728	1	ISM	ENSMUSG00000053907.11	ENSMUST00000205335.2	3387	8	4821	1209	305	285	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAACCTTTGTGCCCTATC	NA	NA	NA	NA	NA	NA	NA	NA	72411718	72410990	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_72411000_72411700
ONT_simulated_read_3400256	chr2	+	185	2	ISM	ENSMUSG00000095315.3	ENSMUST00000238230.2	2159	4	12271	2927	0	-2927	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTAATTTTTATGTGCAA	NA	NA	NA	NA	NA	NA	NA	NA	150165621	150166005	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_150165749_150165947
ONT_simulated_read_3400744	chr7	-	1197	7	ISM	ENSMUSG00000059146.13	ENST00000355254.6	2938	18	127357	178	126793	-141	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAAGCATTTATACTCTG	NA	NA	NA	NA	NA	NA	NA	NA	78100738	77842295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_77842493_77848540_77848700_77896902_77897147_77900448_77900622_77910031_77910163_78005774_78005964_78100634
ONT_simulated_read_3402358	chr1	+	468	1	ISM	ENSMUSG00000026584.15	ENSMUST00000027876.11	4368	14	24510	384	24485	40	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAACTAGTTTTTCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	163781843	163782311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_163781800_163782300
ONT_simulated_read_3404513	chr17	-	323	1	ISM	ENSMUSG00000062753.15	ENSMUST00000154473.9	862	5	1768	93	1678	-93	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAGGCTATTTGTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	27782962	27782639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_27782600_27783000
ONT_simulated_read_340681	chr4	-	361	1	ISM	ENSMUSG00000028322.12	ENSMUST00000030003.10	1077	4	3601	55	3489	-55	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTATAGATGAGAAAATTATA	NA	NA	NA	NA	NA	NA	NA	NA	45317028	45316667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_45316700_45317000
ONT_simulated_read_3408074	chr5	+	1481	5	ISM	ENSMUSG00000029095.18	ENST00000361737.9	2623	15	42904	-7	26914	-1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTAGTCTCACATCAACC	NA	NA	NA	NA	NA	NA	NA	NA	35998697	36041809	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_35998746_36014471_36014525_36015169_36015309_36032176_36032258_36040649
ONT_simulated_read_3408764	chr7	-	1168	9	ISM	ENSMUSG00000054808.16	ENST00000424234.7	2915	21	60241	481	60241	-481	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACCATAGTGGCCTCGTG	NA	NA	NA	NA	NA	NA	NA	NA	28601453	28594044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301
ONT_simulated_read_3409261	chr6	+	796	7	ISM	ENSMUSG00000102802.4	ENST00000477922.3	5162	43	1	58534	0	-58534	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGGGGCTTCTTTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	40763874	40776195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_40763981_40768502_40768580_40773224_40773349_40773456_40773567_40773865_40774021_40774756_40774929_40776143
ONT_simulated_read_3415881	chr19	-	676	6	ISM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	4033	12974	4033	-12974	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTTGACAAGATGGAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	5341450	5336933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332
ONT_simulated_read_3416181	chr2	-	909	1	ISM	ENSMUSG00000026890.20	ENSMUST00000112961.10	3292	9	20007	1192	14506	542	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTCTTCTCTAGGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	35974065	35973156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_35973200_35974100
ONT_simulated_read_3417559	chr6	-	1319	8	ISM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	6218	698	6218	-698	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	319	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTGGGAAAGACCTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	47784146	47773772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939
ONT_simulated_read_3418125	chr2	-	547	1	FSM	ENSMUSG00000081787.2	ENSMUST00000120190.2	648	1	0	101	0	-101	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTGAACCCCAGAATCTG	NA	NA	NA	NA	NA	NA	NA	NA	116358971	116358424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_116358400_116359000
ONT_simulated_read_3418191	chr15	-	1395	10	ISM	ENSMUSG00000022614.9	ENSMUST00000023283.6	2906	14	1361	1020	1164	-534	internal_fragment	TRUE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAACACTGGAAACCCTG	NA	NA	NA	NA	NA	NA	NA	NA	89238501	89236226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285
ONT_simulated_read_3418197	chr11	-	1068	1	ISM	ENSMUSG00000020483.15	ENSMUST00000178105.3	2187	2	2460	960	2460	-960	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGGATAAGTGGAATCTC	NA	NA	NA	NA	NA	NA	NA	NA	87872378	87871310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_87871300_87872400
ONT_simulated_read_3419559	chr17	+	1463	6	ISM	ENSMUSG00000023908.9	ENSMUST00000024701.9	2040	8	169	1104	169	-1104	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGGCCCACCGGCCACA	NA	NA	NA	NA	NA	NA	NA	NA	23945478	23954600	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_23945616_23951310_23951799_23952796_23953291_23953939_23954047_23954173_23954347_23954536
ONT_simulated_read_3419863	chr15	-	1122	6	ISM	ENSMUSG00000061731.10	ENSMUST00000077273.9	7663	11	256148	4290	256148	-4290	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGCAGGTTTAAACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	52953407	52931723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_52932246_52936688_52936861_52939164_52939326_52946480_52946571_52951450_52951547_52953326
ONT_simulated_read_3421087	chr6	+	440	1	ISM	ENSMUSG00000064080.13	ENSMUST00000113498.9	4644	17	0	59645	0	-58989	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCGGGTAAGTACAGAGCC	NA	NA	NA	NA	NA	NA	NA	NA	91189436	91189876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_91189400_91189900
ONT_simulated_read_3421870	chr7	-	260	3	ISM	ENSMUSG00000001773.15	ENST00000356696.7	2046	17	26424	24757	26424	-24757	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTCATGAAATTGTGCGG	NA	NA	NA	NA	NA	NA	NA	NA	86396091	86393623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_86393699_86395319_86395406_86395992
ONT_simulated_read_34240	chr14	-	668	1	ISM	ENSMUSG00000037526.8	ENSMUST00000226299.2	3729	11	28655	434	26440	-433	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAATACACATTTCAACCA	NA	NA	NA	NA	NA	NA	NA	NA	47779451	47778783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_47778800_47779500
ONT_simulated_read_3424352	chr1	-	402	1	ISM	ENSMUSG00000026094.15	ENSMUST00000027263.14	3293	8	27454	1863	27454	-1863	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAACAGTTTAAATGCT	NA	NA	NA	NA	NA	NA	NA	NA	53796929	53796527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_53796500_53796900
ONT_simulated_read_3426210	chr2	+	1077	9	ISM	ENSMUSG00000026926.15	ENSMUST00000114093.2	1638	11	8	775	8	-775	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGTTCTCCAGGCTCTA	NA	NA	NA	NA	NA	NA	NA	NA	26279367	26283178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097
ONT_simulated_read_3427114	chr4	-	706	6	ISM	ENSMUSG00000050812.19	ENSMUST00000107557.9	4946	24	67725	4055	67725	-4055	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATACTTGGCTAAGAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	58844202	58834608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_58834660_58836121_58836257_58840674_58840767_58841382_58841606_58842567_58842649_58844078
ONT_simulated_read_3428555	chr7	+	605	5	ISM	ENSMUSG00000078765.12	ENSMUST00000163654.8	781	7	554	64	523	-53	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCGACACAGGAACCTCC	NA	NA	NA	NA	NA	NA	NA	NA	30263303	30264723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264519
ONT_simulated_read_3430402	chr18	+	1906	17	ISM	ENSMUSG00000024498.17	ENST00000679501.2	4232	23	24783	990	24783	-964	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTAGTACTGGACTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	42669357	42707655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42684174_42684226_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
ONT_simulated_read_343387	chr14	-	1919	8	ISM	ENSMUSG00000060373.16	ENSMUST00000228232.2	2535	9	5963	-3	0	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	NA	NA	NA	NA	NA	NA	NA	NA	52335498	52312255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52334778
ONT_simulated_read_3434977	chr4	+	2320	14	NIC	ENSMUSG00000028542.18	novel	2320	14	NA	NA	0	4	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACCCAACCCTTGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	117706395	117725463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_+_117706664_117712319_117712476_117713071_117713229_117713886_117714019_117714399_117714671_117720625_117720759_117720885_117721021_117721109_117721214_117721601_117721840_117721950_117722086_117722194_117722295_117722392_117722494_117724955_117725127_117725244
ONT_simulated_read_3441698	chr17	+	360	4	ISM	ENSMUSG00000006705.14	ENSMUST00000237248.2	2014	11	9	14878	9	-14481	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACAGGGCTCAGAAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	31783789	31809627	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_31783863_31802669_31802778_31807433_31807562_31809576
ONT_simulated_read_3442682	chrX	-	620	2	ISM	ENSMUSG00000025151.17	ENSMUST00000026142.8	2821	13	854	4493	854	-3982	internal_fragment	FALSE	canonical	NA	NA	NA	NA	447	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCGCAGGTATCTCTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	93584895	93583572	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_93584154_93584856
ONT_simulated_read_3443052	chr11	-	383	4	ISM	ENSMUSG00000001441.14	ENST00000620148.2	1482	12	22114	7675	9332	-7667	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGTGGCATTTGTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	97149170	97133547	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97133630_97135253_97135362_97139027_97139150_97149099
ONT_simulated_read_3444091	chr5	-	1755	1	ISM	ENSMUSG00000042594.17	ENSMUST00000086310.8	4195	9	18793	664	18038	-664	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGCCTTCAGAAGAGAGACT	NA	NA	NA	NA	NA	NA	NA	NA	121956129	121954374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_121954400_121956100
ONT_simulated_read_3444414	chr3	-	676	4	ISM	ENSMUSG00000027674.17	ENST00000485199.5	2821	14	72	57150	72	-56501	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTCCGAGGGCCAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	33197332	33061308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_33061466_33069113_33069226_33134613_33134686_33196997
ONT_simulated_read_344579	chr10	-	516	1	ISM	ENSMUSG00000020108.5	ENSMUST00000020308.5	1755	3	832	818	832	-818	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAAGACAAGGAATTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	59786824	59786308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_59786300_59786800
ONT_simulated_read_3448583	chr4	-	739	5	ISM	ENSMUSG00000028795.16	ENSMUST00000030586.15	879	6	1166	0	1097	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTCGGTGCTCTCCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	129516574	129513066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129513240_129514249_129514273_129514475_129514670_129514776_129514944_129516392
ONT_simulated_read_3449147	chr16	-	1058	8	ISM	ENSMUSG00000058240.15	ENSMUST00000117644.8	1727	12	21526	184	10193	80	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTGCTTTCAGCAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	91504164	91486413	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112
ONT_simulated_read_3453519	chr12	-	1283	3	ISM	ENSMUSG00000021276.11	ENSMUST00000221182.2	774	4	9283	-541	9283	55	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATCACCCAAAATTGCT	NA	NA	NA	NA	NA	NA	NA	NA	110846248	110839540	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_110840564_110843274_110843405_110846118
ONT_simulated_read_3456093	chr4	-	261	3	ISM	ENSMUSG00000028975.17	ENSMUST00000103217.11	2006	9	115718	7039	115718	-7039	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGATGGCAGCGAGTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	149068615	149052030	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_149052084_149055006_149055093_149068493
ONT_simulated_read_3460069	chr18	+	331	4	FSM	ENSMUSG00000024530.9	ENST00000590956.5	332	4	1	0	1	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACGCCTCAGGACAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	67597960	67610137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_67598027_67606810_67606901_67609864_67609936_67610033
ONT_simulated_read_3462264	chr11	-	1250	8	ISM	ENSMUSG00000040548.17	ENST00000258991.7	4939	12	68497	1408	34710	-1391	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCCATCTGTTCTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	106435229	106394363	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106394545_106397692_106397814_106402727_106402938_106404412_106404539_106410707_106410841_106420087_106420188_106424696_106424844_106434997
ONT_simulated_read_3464272	chr12	-	936	1	NIC	ENSMUSG00000097729.3	novel	778	6	NA	NA	7506	-163	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCCCTGATGACTGTC	NA	NA	NA	NA	NA	NA	NA	NA	80171864	80170928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_80170900_80171900
ONT_simulated_read_3464365	chr17	+	229	2	ISM	ENSMUSG00000040482.17	ENSMUST00000046244.15	1519	7	63	1772	63	-1676	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCCCGGGCAGTCCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	35056057	35056437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35056218_35056368
ONT_simulated_read_3465048	chr15	-	418	4	ISM	ENSMUSG00000056258.10	ENST00000521134.6	2512	13	6201	25433	6201	-25433	internal_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGATTTTATGAATCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	65897118	65892175	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_65892231_65893589_65893686_65895495_65895607_65896962
ONT_simulated_read_3466685	chr15	-	2529	12	ISM	ENSMUSG00000005125.14	ENSMUST00000005256.14	2889	16	23088	0	23088	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTCTTTTCCTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	66818401	66801166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809715_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66814913_66815001_66815852_66815914_66816624_66816688_66818280
ONT_simulated_read_3468569	chr3	-	459	5	ISM	ENSMUSG00000000339.15	ENSMUST00000000348.15	1594	11	8529	4079	8529	-4079	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATCAGTCACACTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	116293328	116286690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_116286737_116287731_116287827_116289284_116289344_116291238_116291364_116293194
ONT_simulated_read_34701	chr6	-	522	1	ISM	ENSMUSG00000029817.12	ENSMUST00000204189.3	1777	8	19279	286	19279	-282	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTCACCTTTTAGAAAT	NA	NA	NA	NA	NA	NA	NA	NA	49221665	49221143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_49221100_49221700
ONT_simulated_read_3472064	chr5	-	1636	4	ISM	ENSMUSG00000038552.15	ENSMUST00000172435.8	2333	7	1134	0	1069	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGTTCTGGGACCTATT	NA	NA	NA	NA	NA	NA	NA	NA	31452146	31449585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_31450831_31451029_31451158_31451447_31451538_31451973
ONT_simulated_read_3472536	chr4	-	738	1	ISM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	15979	0	15979	0	mono-exon	FALSE	NA	NA	NA	NA	NA	505	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTCTTTGTTTCTTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	149235185	149234447	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_149234400_149235200
ONT_simulated_read_3472769	chr6	+	505	5	ISM	ENSMUSG00000064080.13	ENSMUST00000113498.9	4644	17	43949	7728	23327	-7072	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGACCCCGAGGGCAACTG	NA	NA	NA	NA	NA	NA	NA	NA	91233385	91241793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_91233427_91233861_91233976_91234706_91234809_91240320_91240456_91241680
ONT_simulated_read_3472905	chr18	+	1677	10	ISM	ENSMUSG00000050321.4	ENST00000583169.5	2210	11	191	6669	191	-6632	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCAAATGCCCTTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	86413945	86518211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_86414036_86416082_86416137_86416376_86416515_86422764_86423014_86479166_86479209_86479324_86479453_86491739_86491969_86512874_86512989_86516666_86517226_86518137
ONT_simulated_read_3476780	chr1	+	512	1	ISM	ENSMUSG00000045954.8	ENSMUST00000051572.8	3055	2	0	13323	0	-13323	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGGAGGGCTCGGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	51328284	51328796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_51328300_51328800
ONT_simulated_read_3478531	chr17	+	1696	4	FSM	ENSMUSG00000034165.17	ENST00000414200.6	1652	4	-12	-32	-12	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAGGTGGCTCTTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	47904453	47910608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_47904778_47908344_47908505_47908927_47909065_47909533
ONT_simulated_read_3479349	chr6	-	1198	9	ISM	ENSMUSG00000030083.12	ENST00000453791.6	1379	11	1190	36	1190	-36	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	551	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCTCGTGTCCATTGGC	NA	NA	NA	NA	NA	NA	NA	NA	88816721	88813259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608
ONT_simulated_read_3481114	chr10	-	654	5	ISM	ENSMUSG00000020198.9	ENSMUST00000020420.9	4805	31	19315	12061	19315	-12061	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGAGTGAGTCGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	80558783	80554850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80555223_80555500_80555647_80556953_80557003_80557424_80557475_80558746
ONT_simulated_read_3481802	chr5	+	1150	9	ISM	ENSMUSG00000037426.19	ENST00000646969.1	5025	40	103132	587	103132	-587	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCGGGTTGGCTACAACTG	NA	NA	NA	NA	NA	NA	NA	NA	33125062	33148386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
ONT_simulated_read_3482	chr12	-	499	3	NIC	ENSMUSG00000021189.12	novel	5363	11	NA	NA	15378	2	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	1600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTAAATGTCCCGTTT	NA	NA	NA	NA	NA	NA	NA	NA	101899320	101889168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_101889464_101892742_101892841_101899214
ONT_simulated_read_34823	chr3	-	407	1	ISM	ENSMUSG00000050315.15	ENSMUST00000106426.8	7063	5	155854	3317	36810	-120	mono-exon	FALSE	NA	NA	NA	NA	NA	372	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGTCCAGAAATGATTT	NA	NA	NA	NA	NA	NA	NA	NA	122873891	122873484	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_122873500_122873900
ONT_simulated_read_3485639	chr9	+	855	9	ISM	ENSMUSG00000023495.14	ENSMUST00000024260.14	2035	13	6818	803	635	-762	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACGGCCCTGCCCACAGC	NA	NA	NA	NA	NA	NA	NA	NA	106337858	106340408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340329
ONT_simulated_read_3487434	chr3	-	4897	1	ISM	ENSMUSG00000054414.5	ENSMUST00000067485.4	9020	11	60730	2807	60720	-2807	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCTACGATGGTAACATG	NA	NA	NA	NA	NA	NA	NA	NA	115740325	115735428	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_115735400_115740300
ONT_simulated_read_3488309	chr6	-	728	4	ISM	ENSMUSG00000057691.9	ENST00000461958.2	744	5	-10	411	-10	0	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	674	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAGGGTTGGGAAAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	48063480	48059087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_48059202_48060026_48060109_48060239_48060540_48063248
ONT_simulated_read_3488932	chr10	-	1556	1	ISM	ENSMUSG00000059901.13	ENSMUST00000092486.11	5188	22	74481	290	74285	-290	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGGGAAGATGCGTAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	61034736	61033180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_61033200_61034700
ONT_simulated_read_3489861	chr3	+	878	6	ISM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	43	8847	43	-8847	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	145	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGCTTAATGAGGGCAC	NA	NA	NA	NA	NA	NA	NA	NA	32762698	32772275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179
ONT_simulated_read_3490970	chr12	-	1084	1	FSM	ENSMUSG00000054364.6	ENSMUST00000067384.6	2349	1	0	1265	0	-1265	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGCTGGTGGCTCTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	8550009	8548925	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_8548900_8550000
ONT_simulated_read_3491400	chr7	+	1320	7	ISM	ENSMUSG00000030555.17	ENSMUST00000107470.2	1915	11	14605	-3	14605	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTTTGTGTGTTTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	67319799	67376324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
ONT_simulated_read_3493981	chr5	+	1189	5	ISM	ENSMUSG00000029501.15	ENSMUST00000197188.5	4077	13	19736	1002	19699	-1002	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGGAGACACTTCCAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	110398605	110402333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_110398674_110399362_110399554_110400577_110401209_110401648_110401781_110402166
ONT_simulated_read_3497929	chr8	-	1318	1	NIC	ENSMUSG00000031729.7	novel	2304	10	NA	NA	6868	0	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGTGTTGGTCAAATGAG	NA	NA	NA	NA	NA	NA	NA	NA	110399274	110397956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_110398000_110399300
ONT_simulated_read_349795	chr7	-	216	2	ISM	ENSMUSG00000048170.15	ENSMUST00000119081.2	2347	17	27748	12053	27748	-12053	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTGCCTTAACAAGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	128314462	128311543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_128311685_128314387
ONT_simulated_read_3498436	chr15	+	1113	6	ISM	ENSMUSG00000023484.15	ENST00000257860.9	1451	9	0	1334	0	-1334	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGGCTGGAGGAAGAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	98953061	98955217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_98953645_98953984_98954046_98954221_98954318_98954649_98954818_98954913_98955040_98955138
ONT_simulated_read_3500282	chr9	-	723	8	ISM	ENSMUSG00000032422.19	ENST00000682491.1	2690	26	2695	26550	2695	-26550	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCTTGGATGAAAGCATT	NA	NA	NA	NA	NA	NA	NA	NA	88302377	88285383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88302303
ONT_simulated_read_3500404	chr6	-	684	3	ISM	ENSMUSG00000040029.16	ENSMUST00000048418.14	5360	25	54063	1762	54060	-1754	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATCAGTGGATTTATG	NA	NA	NA	NA	NA	NA	NA	NA	148678902	148673942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_148674308_148676474_148676592_148678700
ONT_simulated_read_3501566	chr17	-	915	7	ISM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	7975	2758	7975	-2758	internal_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCAGAAGTGCCGACGG	NA	NA	NA	NA	NA	NA	NA	NA	36272678	36270468	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592
ONT_simulated_read_3502139	chr11	-	457	4	ISM	ENSMUSG00000025155.16	ENSMUST00000106133.8	1762	14	3603	2649	3600	-2649	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGCCGAGCCAGCCAACA	NA	NA	NA	NA	NA	NA	NA	NA	120683621	120682680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120682787_120682852_120682954_120683180_120683326_120683516
ONT_simulated_read_3502239	chr12	+	1246	15	ISM	ENSMUSG00000044712.16	ENSMUST00000140523.8	3032	16	129	1940	-10	-65	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCCAGGGTTATTTTATC	NA	NA	NA	NA	NA	NA	NA	NA	73333681	73398883	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_73333807_73335166_73335298_73338933_73339008_73356918_73356972_73365750_73365791_73376753_73376833_73383795_73383879_73384283_73384343_73388181_73388248_73388480_73388535_73390442_73390523_73391566_73391668_73397287_73397413_73398524_73398670_73398852
ONT_simulated_read_350230	chr6	+	779	4	ISM	ENSMUSG00000056091.13	ENSMUST00000114112.4	2439	7	134	12127	134	-11546	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGTCACGCCCTCAACC	NA	NA	NA	NA	NA	NA	NA	NA	72074740	72119428	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_72074979_72105247_72105372_72109035_72109148_72119123
ONT_simulated_read_3503815	chr7	+	709	4	ISM	ENSMUSG00000030682.5	ENSMUST00000205830.2	805	5	1380	-75	1380	75	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTCAGGAGGCCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	126577404	126579068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_126577588_126578086_126578169_126578493_126578576_126578706
ONT_simulated_read_3506232	chr16	-	470	1	FSM	ENSMUSG00000102101.2	ENSMUST00000186480.2	1350	1	718	162	718	-162	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGGCCAAATACTGTCGC	NA	NA	NA	NA	NA	NA	NA	NA	55794262	55793792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_55793800_55794300
ONT_simulated_read_3506365	chr7	+	1457	10	ISM	ENSMUSG00000052707.9	ENST00000395799.8	8355	25	47494	13937	47465	-13937	internal_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCCTGAATCCGCTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	122770868	122780578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_122771342_122772455_122772633_122773366_122773543_122774648_122774682_122776046_122776128_122776904_122776957_122778939_122779083_122779471_122779619_122779762_122779901_122780541
ONT_simulated_read_3509551	chr1	+	730	6	ISM	ENSMUSG00000026305.16	ENSMUST00000097649.10	3645	8	53	9925	0	-9925	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCCACTGCCTTCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	90981228	91035112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91032848_91033020_91035019
ONT_simulated_read_351013	chr11	-	792	8	ISM	ENSMUSG00000018425.19	ENST00000587125.1	914	9	1438	5	1438	-5	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGACTGCTGTGGCTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	86690473	86666485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86680311_86680399_86683987_86684088_86689747_86689815_86690398
ONT_simulated_read_3510136	chr5	-	1391	12	NNC	ENSMUSG00000001082.13	novel	1906	13	NA	NA	382	-266	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAAGGAGGAGTAGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	34794151	34791258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793108_34793364_34793469_34793753_34793851_34793937
ONT_simulated_read_3513212	chr14	+	556	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	-100	229	0	-229	mono-exon	FALSE	NA	NA	NA	NA	NA	3205	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGATCTTCGTGAAGACCC	NA	NA	NA	NA	NA	NA	NA	NA	46321484	46322040	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_46321500_46322000
ONT_simulated_read_3514283	chr5	+	2029	13	ISM	ENSMUSG00000042605.17	ENST00000644883.1	2956	20	-135	17298	-131	-17298	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTTTGTTAAAGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	121849922	121923931	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821
ONT_simulated_read_3516328	chr9	+	789	10	ISM	ENSMUSG00000032359.15	ENSMUST00000034915.15	1617	12	254	4204	254	-4204	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAGATTTTTTGATGTAT	NA	NA	NA	NA	NA	NA	NA	NA	89936573	89953938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_89936688_89942531_89942564_89943571_89943678_89944769_89944841_89946205_89946311_89946559_89946647_89947444_89947501_89949079_89949162_89950457_89950527_89953871
ONT_simulated_read_3517134	chr5	+	664	5	ISM	ENSMUSG00000029186.13	ENSMUST00000031082.8	3034	10	12992	1491	12992	-1491	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAATAATTCAAGTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	52911943	52925191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_52912047_52914207_52914308_52918215_52918350_52919773_52919834_52924924
ONT_simulated_read_3517760	chr18	-	742	5	ISM	ENSMUSG00000024487.6	ENSMUST00000025364.6	3328	6	563	2385	563	-2385	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTGTTGTATGGAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	40351919	40339333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_40339454_40340739_40340922_40343800_40343947_40345095_40345269_40351798
ONT_simulated_read_3518455	chr14	+	422	2	ISM	ENSMUSG00000032925.17	ENST00000618057.4	1853	10	43	312234	43	-312234	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGGCACCTACTTCGGT	NA	NA	NA	NA	NA	NA	NA	NA	123897536	123898842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_123897819_123898702
ONT_simulated_read_351922	chr3	+	1309	6	ISM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	618	3007	536	508	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACCTGATGGCAGATGCTT	NA	NA	NA	NA	NA	NA	NA	NA	102966218	102972223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
ONT_simulated_read_3524599	chr14	-	429	1	ISM	ENSMUSG00000022179.6	ENSMUST00000022786.6	2670	7	21289	613	21247	8	mono-exon	FALSE	NA	NA	NA	NA	NA	267	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGGCTCCTCCCACTC	NA	NA	NA	NA	NA	NA	NA	NA	54822161	54821732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_54821700_54822200
ONT_simulated_read_3525128	chr3	+	398	4	ISM	ENSMUSG00000027804.14	ENSMUST00000029382.13	1752	10	2324	4819	2324	-4819	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACTGGGGAATCTTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	79500995	79506138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_79501058_79502508_79502616_79504991_79505181_79506098
ONT_simulated_read_3525319	chr1	+	672	6	ISM	ENSMUSG00000025995.17	ENSMUST00000027139.15	2953	21	6823	11453	6823	-11453	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTTGTTCTGTACTTCT	NA	NA	NA	NA	NA	NA	NA	NA	45841148	45851326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200
ONT_simulated_read_352546	chr11	+	251	1	ISM	ENSMUSG00000018572.11	ENSMUST00000018716.10	2006	5	0	3982	0	-3738	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATGGCGGAGCCCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	69886602	69886853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_69886600_69886900
ONT_simulated_read_3525596	chr15	-	1233	4	ISM	ENSMUSG00000033228.9	ENSMUST00000047835.8	5766	15	36184	6257	-3812	-5130	internal_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGAAAGTACTGACTTGA	NA	NA	NA	NA	NA	NA	NA	NA	96322540	96317793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_96318728_96319826_96319934_96321397_96321500_96322450
ONT_simulated_read_3526967	chr2	-	3061	4	ISM	ENSMUSG00000035666.15	ENSMUST00000037117.6	6941	5	4933	3456	4933	-3456	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGGGCTTAAAGAGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	28725365	28715772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_28716810_28717489_28717579_28720513_28720645_28723561
ONT_simulated_read_3527266	chr18	-	1119	1	NIC	ENSMUSG00000041891.17	novel	3581	14	NA	NA	18781	-158	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCACAGCTGGGCTAG	NA	NA	NA	NA	NA	NA	NA	NA	66116911	66115792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_66115800_66116900
ONT_simulated_read_352784	chr5	+	960	10	FSM	ENSMUSG00000029521.8	ENST00000403642.5	1079	10	119	0	119	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTACGAGGCAGTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	110989319	111015960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_110989410_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873
ONT_simulated_read_3527879	chr15	+	1789	12	ISM	ENSMUSG00000022272.18	ENSMUST00000110457.8	8125	41	24	77579	24	-77577	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCACGGGCGCAGAGAGCG	NA	NA	NA	NA	NA	NA	NA	NA	25622634	25736180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_25623117_25666511_25666611_25701647_25701807_25714114_25714303_25722255_25722391_25723969_25724095_25725157_25725172_25725281_25725367_25726505_25726610_25732055_25732186_25734073_25734193_25736031
ONT_simulated_read_3532773	chr6	-	2547	9	ISM	ENSMUSG00000040234.17	ENSMUST00000037709.16	3241	12	12624	154	12624	-154	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTATTCTTTGTACTGTCG	NA	NA	NA	NA	NA	NA	NA	NA	146523471	146504003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_146505520_146507625_146507789_146509076_146509175_146511313_146511467_146512371_146512453_146514875_146514963_146520031_146520210_146521337_146521510_146523372
ONT_simulated_read_3533698	chr6	+	199	1	ISM	ENSMUSG00000000693.11	ENSMUST00000000707.9	4098	14	17429	762	16123	483	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTTGGCTCACGGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	83028582	83028781	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_83028600_83028800
ONT_simulated_read_3535924	chr2	-	771	5	ISM	ENSMUSG00000026971.16	ENST00000409967.6	2156	12	39024	137	39017	-137	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTGGGGGTGTCACTGG	NA	NA	NA	NA	NA	NA	NA	NA	60464990	60435619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_60435651_60441710_60441831_60458091_60458510_60458678_60458814_60464923
ONT_simulated_read_3540007	chr3	-	1329	9	ISM	ENSMUSG00000015747.6	ENSMUST00000015891.6	2637	15	12044	0	11511	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTTCAGTGTTTGATGG	NA	NA	NA	NA	NA	NA	NA	NA	95953734	95907143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95907464_95926920_95927053_95938317_95938440_95940090_95940199_95940976_95941136_95948649_95948818_95949620_95949735_95950105_95950241_95953663
ONT_simulated_read_3540246	chr10	+	809	6	ISM	ENSMUSG00000025348.10	ENSMUST00000218290.2	4020	25	236	15398	7	-15164	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACAAAGGGGCTGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	128769924	128778750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_128770064_128774908_128775037_128775136_128775217_128776550_128776807_128777313_128777446_128778676
ONT_simulated_read_3541948	chr5	-	815	4	ISM	ENSMUSG00000042216.14	ENSMUST00000112324.2	1102	5	993	0	993	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAGAGTGGTGTCTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	113427460	113421817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_113422223_113423899_113424039_113426998_113427132_113427322
ONT_simulated_read_3542203	chr2	-	2094	11	ISM	ENSMUSG00000026672.12	ENSMUST00000114996.8	2614	14	17847	0	8507	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTATCTGATTTATT	NA	NA	NA	NA	NA	NA	NA	NA	5051009	5025452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797
ONT_simulated_read_3542353	chrX	+	794	6	ISM	ENSMUSG00000031360.15	ENSMUST00000033727.14	3353	19	0	110975	0	-56996	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTTAAACACAGTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	161684627	161704529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_161684744_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445
ONT_simulated_read_3544228	chr10	-	898	6	ISM	ENSMUSG00000071359.14	ENSMUST00000095794.4	1195	7	19846	142	19355	-142	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGATGTCATTATTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	22587991	22581421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812
ONT_simulated_read_354913	chr17	-	1847	1	ISM	ENSMUSG00000073436.12	ENSMUST00000119848.8	5226	7	2124	2599	2124	1067	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGCACACCAATAATGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	25111905	25110058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_25110100_25111900
ONT_simulated_read_3557136	chr11	+	585	3	ISM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	15023	1767	15023	-1767	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCGTAATGATGTAATAGC	NA	NA	NA	NA	NA	NA	NA	NA	109556769	109558715	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_109556813_109557469_109557552_109558255
ONT_simulated_read_3560010	chr19	-	1315	1	NIC	ENSMUSG00000049670.10	novel	1800	5	NA	NA	10086	0	mono-exon	FALSE	NA	NA	NA	NA	NA	232	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTGTGTTATGAACTTT	NA	NA	NA	NA	NA	NA	NA	NA	42064695	42063380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_42063400_42064700
ONT_simulated_read_3560678	chr15	-	171	2	ISM	ENSMUSG00000022283.16	ENST00000519100.6	2201	14	9555	2258	9171	-1457	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCCCAGCAACATCTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	36599258	36598263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_36598372_36599195
ONT_simulated_read_3560907	chr16	-	2004	14	ISM	ENSMUSG00000012114.18	ENSMUST00000232645.2	3105	17	25206	755	25132	21	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGACTGGGCAGCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	17515558	17469826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17490932_17491263_17492268_17492523_17501022_17501053_17503316_17503369_17515470
ONT_simulated_read_3561544	chr2	-	555	8	ISM	ENSMUSG00000036591.17	ENST00000376410.7	6848	24	107873	2437	23501	-170	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	202	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGGATCCGGGAAGGATCA	NA	NA	NA	NA	NA	NA	NA	NA	20864607	20855190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_20855197_20857848_20857881_20859745_20859852_20860164_20860207_20860391_20860518_20863711_20863802_20863877_20863952_20864528
ONT_simulated_read_3562390	chr19	-	365	2	NIC	ENSMUSG00000117975.2	novel	1857	2	NA	NA	47	-1441	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAGCAGCAGCTAGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	47907689	47886391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_47886630_47907562
ONT_simulated_read_356337	chr9	-	1445	9	ISM	ENSMUSG00000041268.18	ENST00000449909.7	7258	41	27540	80578	27540	-80578	internal_fragment	TRUE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCCAGCAAGAGATGATGT	NA	NA	NA	NA	NA	NA	NA	NA	54381199	54354236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_54354350_54358080_54358353_54358885_54359126_54364907_54365083_54366137_54366322_54368222_54368402_54379475_54379543_54380171_54380308_54381120
ONT_simulated_read_3564517	chr1	-	742	1	ISM	ENSMUSG00000026484.14	ENSMUST00000187048.7	3201	8	29409	1256	7221	461	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATAATATCTCATTTAAAG	NA	NA	NA	NA	NA	NA	NA	NA	151347153	151346411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_151346400_151347200
ONT_simulated_read_3566223	chr19	+	953	4	ISM	ENSMUSG00000038658.16	ENSMUST00000043610.13	7190	26	73246	6813	73246	-6813	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTAGCCCTGAAGAGACTT	NA	NA	NA	NA	NA	NA	NA	NA	29572927	29577416	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_29573400_29575146_29575306_29575389_29575527_29577231
ONT_simulated_read_3566840	chr1	-	460	1	ISM	ENSMUSG00000016194.15	ENSMUST00000016338.15	1623	6	20426	110	19395	-55	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACTAATGTAACATTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	192904511	192904051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_192904100_192904500
ONT_simulated_read_356690	chr12	-	2283	8	ISM	ENSMUSG00000020647.11	ENSMUST00000085814.5	7329	23	202235	1369	69553	452	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGTAGCTTTTTTTCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	4324947	4298730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_4299751_4299835_4299891_4303656_4303747_4309211_4309396_4313433_4313609_4317606_4318010_4320746_4320849_4324693
ONT_simulated_read_3566913	chr16	-	957	1	ISM	ENSMUSG00000022664.12	ENSMUST00000023344.10	4233	7	16502	1675	15979	698	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAATAATAATGACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	44962567	44961610	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_44961600_44962600
ONT_simulated_read_3567501	chr6	+	1312	6	ISM	ENSMUSG00000029769.17	ENSMUST00000154619.5	3356	15	9615	8778	9615	-8778	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCGAGAAGGAGCTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	29412482	29418078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_29412534_29412900_29413087_29414784_29414980_29415429_29415655_29417070_29417578_29417930
ONT_simulated_read_3569249	chr4	+	632	4	ISM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	75	30939	75	-30939	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCACCAAAGCTAGAGGTC	NA	NA	NA	NA	NA	NA	NA	NA	3574949	3585680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451
ONT_simulated_read_3571156	chr11	-	969	9	ISM	ENSMUSG00000018593.14	ENSMUST00000213866.2	1366	11	10311	99	9919	-99	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTAAAATGTTTGGATG	NA	NA	NA	NA	NA	NA	NA	NA	55300805	55286345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753
ONT_simulated_read_3575619	chr5	+	1198	4	ISM	ENSMUSG00000029466.12	ENSMUST00000031422.10	2751	11	16930	429	16893	-429	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGAGGCAGCCATGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	122577436	122582546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_122577579_122578148_122578374_122579352_122579504_122581866
ONT_simulated_read_357583	chr3	-	2031	1	ISM	ENSMUSG00000041734.16	ENSMUST00000159976.8	7236	16	91107	2970	90957	-2962	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCTGAGACCTGCGCGAT	NA	NA	NA	NA	NA	NA	NA	NA	86990900	86988869	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_86988900_86990900
ONT_simulated_read_3582549	chr6	+	707	1	Antisense	novelGene_ENSMUSG00000053907.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCATTATTCACTACAGT	NA	NA	NA	NA	NA	NA	NA	NA	72410287	72410994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr6_+_72410300_72411000
ONT_simulated_read_3583432	chr18	-	1002	1	ISM	ENSMUSG00000038121.7	ENSMUST00000042852.7	9651	4	31403	7742	31308	660	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAAAAGTCTGTAACGGAA	NA	NA	NA	NA	NA	NA	NA	NA	68402001	68400999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_68401000_68402000
ONT_simulated_read_3584890	chr17	-	333	1	NIC	ENSMUSG00000061207.12	novel	1120	7	NA	NA	12620	0	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTCTGTGTCCTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	35043301	35042968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_35043000_35043300
ONT_simulated_read_3588156	chr16	+	1183	11	ISM	ENSMUSG00000022517.18	ENSMUST00000230990.2	2519	17	-118	10557	0	-10557	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTGCCTTTCATCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	4704131	4742396	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286
ONT_simulated_read_3588630	chr2	-	224	1	ISM	ENSMUSG00000017002.15	ENSMUST00000109367.10	876	4	2214	0	1774	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCGTGACTCTGATTCACT	NA	NA	NA	NA	NA	NA	NA	NA	164196213	164195989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_164196000_164196200
ONT_simulated_read_3590853	chr10	+	1053	6	ISM	ENSMUSG00000019977.17	ENSMUST00000219915.2	2733	18	58617	82	58516	-82	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCGAAGTGACAGAAATCT	NA	NA	NA	NA	NA	NA	NA	NA	21230548	21244700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
ONT_simulated_read_3592889	chr5	-	307	1	ISM	ENSMUSG00000029455.15	ENSMUST00000031411.15	3867	13	89	27402	89	-22826	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCCGCCGCCGCCACCA	NA	NA	NA	NA	NA	NA	NA	NA	121731798	121731491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_121731500_121731800
ONT_simulated_read_3595975	chr7	+	481	1	ISM	ENSMUSG00000030522.15	ENSMUST00000032736.11	5205	16	50225	2431	50225	-2431	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAATAAATTAGTGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	63987642	63988123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_63987600_63988100
ONT_simulated_read_3596255	chr11	+	443	2	ISM	ENSMUSG00000020700.12	ENST00000584573.5	2477	17	18	57253	0	-57178	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACGTGTGGCTCTGGTAGA	NA	NA	NA	NA	NA	NA	NA	NA	105975438	105987938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_105975760_105987816
ONT_simulated_read_3597715	chr1	+	855	1	FSM	ENSMUSG00000050229.4	ENSMUST00000052455.4	7554	1	0	6699	0	-6699	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTCACGTTTGTTGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	172204112	172204967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_172204100_172205000
ONT_simulated_read_359982	chr7	-	572	6	ISM	ENSMUSG00000064179.14	ENSMUST00000166161.8	750	12	4733	-92	4733	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTTCTTCAGGGTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	4512634	4507661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556
ONT_simulated_read_3600089	chr9	+	721	5	ISM	ENSMUSG00000054693.15	ENSMUST00000067880.13	4593	16	19	40107	19	-38354	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTGAAAGGATGAGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	70586297	70647404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_70586542_70610568_70610720_70625939_70626059_70629894_70630054_70647356
ONT_simulated_read_3600201	chr14	+	441	4	ISM	ENSMUSG00000035960.15	ENSMUST00000049411.12	1239	5	10	890	10	-890	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACTCACCCATCAGTACT	NA	NA	NA	NA	NA	NA	NA	NA	51162434	51163706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_51162487_51162669_51162782_51162973_51163162_51163617
ONT_simulated_read_3600361	chr11	-	338	1	ISM	ENSMUSG00000001552.15	ENSMUST00000001592.15	3205	14	26353	440	26353	-440	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACCCCTGACACCCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	100262222	100261884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100261900_100262200
ONT_simulated_read_3602617	chr10	-	551	5	ISM	ENSMUSG00000020263.15	ENSMUST00000020500.14	3020	21	39648	2734	39648	-2734	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAAAAGGTATTTGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	83444954	83438630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_83438763_83438989_83439027_83441623_83441799_83444563_83444617_83444800
ONT_simulated_read_3603314	chr10	-	566	3	ISM	ENSMUSG00000025358.17	ENSMUST00000026415.9	2240	7	3581	990	3581	169	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATGCACTTAACCCGGCT	NA	NA	NA	NA	NA	NA	NA	NA	128537291	128534797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128535080_128535340_128535545_128537211
ONT_simulated_read_3606171	chr11	+	267	4	ISM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	275	12878	275	-11998	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAGATCACTGTGGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	52251961	52267346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217
ONT_simulated_read_3606192	chr2	-	2044	11	ISM	ENSMUSG00000057182.16	ENST00000409101.7	6601	28	71931	1469	71930	-1469	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATCGGCCTCCTGCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	65325735	65291920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_65292082_65295058_65295330_65297265_65297371_65298410_65298549_65299355_65299410_65300269_65300543_65302622_65302746_65312494_65312669_65313386_65313542_65314689_65314811_65325266
ONT_simulated_read_3606195	chr16	+	724	8	ISM	ENSMUSG00000022503.11	ENSMUST00000023146.5	2121	11	22	3091	22	-3091	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGGTCCCCAAGGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	10229833	10239201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090
ONT_simulated_read_3607775	chr7	-	770	3	ISM	ENSMUSG00000036989.17	ENSMUST00000147044.4	2972	12	14314	7349	14314	-7349	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACGCACAGAAGGTGACC	NA	NA	NA	NA	NA	NA	NA	NA	105268378	105267205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105267682_105267872_105268054_105268265
ONT_simulated_read_3611239	chr8	-	223	1	FSM	ENSMUSG00000070713.6	ENSMUST00000075602.8	1151	1	0	928	0	-928	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGAAGGTACCCAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	73059104	73058881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_73058900_73059100
ONT_simulated_read_3612365	chr7	-	1137	5	NIC	ENSMUSG00000064307.14	novel	766	5	NA	NA	49	0	intron_retention	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCCTGTACCTTGTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	101583371	101562190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_101562420_101562641_101562791_101564768_101564975_101569843_101569982_101582956
ONT_simulated_read_3613624	chrX	-	343	1	ISM	ENSMUSG00000031099.17	ENSMUST00000077569.11	4024	24	82402	407	82315	-142	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGGTTTTAGCTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	46898994	46898651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_46898700_46899000
ONT_simulated_read_3614292	chr13	-	1320	5	ISM	ENSMUSG00000032745.19	ENSMUST00000091236.11	3299	12	50784	0	50636	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	144	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCTTTCCAAACAAATTC	NA	NA	NA	NA	NA	NA	NA	NA	111575778	111562465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637
ONT_simulated_read_361727	chr1	+	1171	5	ISM	ENSMUSG00000038463.9	ENSMUST00000046792.9	3095	8	0	16160	0	-16160	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGAGGACGCAGCCACTG	NA	NA	NA	NA	NA	NA	NA	NA	170472100	170494198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_170472665_170475250_170475515_170477304_170477413_170489927_170490105_170494140
ONT_simulated_read_3618712	chr15	-	429	1	ISM	ENSMUSG00000022246.15	ENSMUST00000090339.11	4909	18	142782	1361	142782	-1361	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATTTAATTCCTAACCAA	NA	NA	NA	NA	NA	NA	NA	NA	10570844	10570415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_10570400_10570800
ONT_simulated_read_3620659	chr6	+	1121	7	NNC	ENSMUSG00000036371.7	novel	1667	8	NA	NA	5	-2283	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTAGGCCGCCCAGGACG	NA	NA	NA	NA	NA	NA	NA	NA	67243999	67258715	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_+_67244394_67248181_67248314_67248870_67249012_67249140_67249213_67249802_67249923_67254744_67254923_67258631
ONT_simulated_read_3624542	chrX	-	1695	1	NIC	ENSMUSG00000087174.8	novel	1691	7	NA	NA	26743	-744	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTTCAAGATCTCAAATA	NA	NA	NA	NA	NA	NA	NA	NA	104086898	104085203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_104085200_104086900
ONT_simulated_read_3624856	chr3	+	711	6	ISM	ENSMUSG00000028049.16	ENSMUST00000098941.5	1338	8	0	1919	0	-1919	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCCTTTGTCTGCTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	89084826	89088151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035
ONT_simulated_read_362498	chr16	-	414	3	ISM	ENSMUSG00000050908.13	ENSMUST00000051118.7	3315	7	21488	2090	21488	-2090	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGGCCCAAAGAACTGCT	NA	NA	NA	NA	NA	NA	NA	NA	10243738	10240510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_10240750_10242062_10242123_10243623
ONT_simulated_read_3627754	chr9	+	1702	19	ISM	ENSMUSG00000032216.16	ENSMUST00000034740.15	5499	29	144	14777	8	-13217	5prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATTATGGGTGTGAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	72569771	72642357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291
ONT_simulated_read_3627958	chr8	+	357	1	FSM	ENSMUSG00000066362.6	ENSMUST00000183478.2	538	1	0	181	0	-181	mono-exon	FALSE	NA	NA	NA	NA	NA	1096	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTAAATTCCGCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	87774316	87774673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_87774300_87774700
ONT_simulated_read_3628348	chr19	-	666	7	ISM	ENSMUSG00000063904.5	ENST00000530165.5	1985	16	5062	7185	5062	-7185	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGAGCAGCTGCTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	4973213	4967057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094
ONT_simulated_read_3629830	chr7	+	1649	15	ISM	ENSMUSG00000030471.18	ENSMUST00000118927.8	2410	17	29	4775	29	-4775	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGCTAGCAGCTTTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	48438779	48472413	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_48438886_48445648_48445795_48449576_48449700_48451054_48451133_48452663_48452809_48454097_48454163_48454937_48455101_48455316_48455443_48458540_48458675_48461072_48461174_48465199_48465325_48466167_48466231_48466893_48466988_48468384_48468469_48472317
ONT_simulated_read_3630436	chr19	+	1319	9	ISM	ENSMUSG00000025014.14	ENST00000630152.1	1601	11	-4	6030	3	-6030	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGGAAGGAAAGGGCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	41017823	41041582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_41018081_41025586_41025762_41027312_41027442_41028212_41028384_41029719_41029792_41031301_41031426_41034626_41034760_41035967_41036077_41041433
ONT_simulated_read_3630487	chr2	+	961	10	ISM	ENSMUSG00000027411.18	ENSMUST00000028900.11	3161	24	0	4618	0	-4011	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCTTGATGGGGTCCGC	NA	NA	NA	NA	NA	NA	NA	NA	130266284	130281571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539
ONT_simulated_read_3634739	chr2	-	393	4	ISM	ENSMUSG00000035000.9	ENST00000678668.1	3070	23	34202	13446	34202	-13446	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAACCTTGACCATTACA	NA	NA	NA	NA	NA	NA	NA	NA	62182660	62175421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_62175465_62178161_62178262_62178844_62178900_62182465
ONT_simulated_read_3635802	chr17	+	1723	13	ISM	ENSMUSG00000002833.12	ENSMUST00000225843.2	2238	16	14003	-9	13978	9	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTATTGGCTTAGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	56400701	56407607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_56400723_56403016_56403131_56403204_56403277_56403820_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ONT_simulated_read_3637294	chr2	-	2331	1	ISM	ENSMUSG00000036327.19	ENSMUST00000091263.12	4011	9	13931	473	13931	15	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATGTGAGCAGCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	26101452	26099121	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_26099100_26101500
ONT_simulated_read_3637522	chr8	-	1802	9	ISM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	2005	0	2005	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGTCTTGAGAATTCTG	NA	NA	NA	NA	NA	NA	NA	NA	31656787	31649490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737
ONT_simulated_read_364113	chr15	-	1152	3	ISM	ENSMUSG00000005360.15	ENSMUST00000005493.14	4163	10	68411	1371	68056	-1371	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTTCTGGAACATCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	8671837	8664978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_8665824_8668539_8668675_8671665
ONT_simulated_read_3641310	chr1	+	1844	14	ISM	ENSMUSG00000041763.15	ENSMUST00000087933.10	4649	30	26	30332	18	-30332	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACGTGTGGACCCCAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	43973192	44011799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689
ONT_simulated_read_3641736	chr7	-	339	4	ISM	ENSMUSG00000003099.12	ENST00000391919.1	1878	12	12332	3133	12332	-3133	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATCCTCACCCTCTTCGG	NA	NA	NA	NA	NA	NA	NA	NA	16749395	16741711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_16741757_16742538_16742638_16743799_16743922_16749322
ONT_simulated_read_3644278	chr11	+	1197	1	NIC	ENSMUSG00000016940.19	novel	1764	6	NA	NA	9203	-725	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAACCTGCTTTTGTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	115320178	115321375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_115320200_115321400
ONT_simulated_read_3646122	chrX	-	934	1	ISM	ENSMUSG00000062949.14	ENSMUST00000154051.8	6039	30	365173	1548	178041	-1545	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCACTTTTTTTTTAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	59271131	59270197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_59270200_59271100
ONT_simulated_read_3646178	chr6	-	2991	6	ISM	ENSMUSG00000019124.11	ENSMUST00000019268.11	4810	8	31922	1382	31922	-1382	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	281	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCCAATCCTCTTAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	54511552	54484256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_54486348_54489033_54489215_54497684_54497851_54499744_54499940_54502493_54502697_54511397
ONT_simulated_read_3646563	chr17	-	216	1	ISM	ENSMUSG00000024050.19	ENST00000389282.8	3642	7	7770	1065	7770	78	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTCCGTTTCCAAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	32574135	32573919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32573900_32574100
ONT_simulated_read_3646640	chr9	+	732	4	ISM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	36925	604	36925	-604	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGACATGATAAACTAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	86940991	86959223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_86941129_86941417_86941505_86948701_86948867_86958880
ONT_simulated_read_3647100	chr5	-	1218	4	ISM	ENSMUSG00000029209.16	ENSMUST00000166298.8	1755	7	5671	104	5671	-104	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTTATTTTTATTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	69742500	69732616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_69733297_69735320_69735496_69736850_69737030_69742316
ONT_simulated_read_3647794	chr13	+	792	7	ISM	ENSMUSG00000021476.10	ENSMUST00000021929.10	2564	8	377	1909	334	-1289	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCACATCCCAGCTGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	64310059	64332442	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_64310149_64317827_64317991_64321876_64322036_64322603_64322673_64323818_64323903_64329920_64330093_64332386
ONT_simulated_read_364792	chr14	-	804	5	ISM	ENSMUSG00000021948.18	ENSMUST00000112206.8	2215	15	6612	127	6612	-127	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCACAGTACTTCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	30323167	30317677	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125
ONT_simulated_read_3647980	chr6	-	1148	9	ISM	ENSMUSG00000029752.13	ENST00000444334.5	1679	11	6994	91	6994	-91	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCCTTCTGCCCGCACTC	NA	NA	NA	NA	NA	NA	NA	NA	7682457	7675366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270
ONT_simulated_read_3650079	chr9	-	542	1	ISM	ENSMUSG00000032511.18	ENSMUST00000065196.13	8287	27	75860	2869	75850	-1046	mono-exon	FALSE	NA	NA	NA	NA	NA	375	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGCGAGGATGACTTCGA	NA	NA	NA	NA	NA	NA	NA	NA	119315884	119315342	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_119315300_119315900
ONT_simulated_read_3652175	chr4	-	136	1	ISM	ENSMUSG00000085569.2	ENSMUST00000138655.2	430	2	3883	239	3883	-239	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTCTGGAATTTTAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	89042535	89042399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_89042400_89042500
ONT_simulated_read_3655519	chr1	-	1275	8	ISM	ENSMUSG00000041879.14	ENSMUST00000041023.14	6247	24	28127	5169	28127	-5169	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGCATCAATGCAGACG	NA	NA	NA	NA	NA	NA	NA	NA	135330110	135315218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970
ONT_simulated_read_3656246	chr2	-	604	1	ISM	ENSMUSG00000015335.17	ENSMUST00000102865.11	1165	5	2094	7	2081	0	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCCATGCTGCCGTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	29981566	29980962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_29981000_29981600
ONT_simulated_read_3656264	chr1	+	444	4	ISM	ENSMUSG00000026048.17	ENSMUST00000027214.4	3907	15	10983	17207	10983	-17207	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGACACCTCACATTACAT	NA	NA	NA	NA	NA	NA	NA	NA	44197989	44203213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_44198052_44200136_44200198_44200969_44201114_44203036
ONT_simulated_read_3658737	chr9	-	1104	6	ISM	ENSMUSG00000032423.13	ENSMUST00000173801.8	2944	11	5606	823	3804	-263	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	489	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCGAGAGGAGGTGCCCAA	NA	NA	NA	NA	NA	NA	NA	NA	88359002	88338453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841
ONT_simulated_read_3660239	chr1	-	584	6	ISM	ENSMUSG00000009905.6	ENST00000326575.9	937	9	11836	77	11836	-77	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGGAACACAAGTTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	106675546	106652579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_106652752_106655358_106655461_106662276_106662361_106667060_106667145_106675217_106675314_106675500
ONT_simulated_read_366073	chr8	-	647	1	FSM	ENSMUSG00000110331.2	ENSMUST00000209275.2	551	1	0	-96	0	96	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGATTTCCCAGGCGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	29777009	29776362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_29776400_29777000
ONT_simulated_read_3661011	chr2	-	760	7	ISM	ENSMUSG00000002105.16	ENSMUST00000073575.12	2469	10	4241	1272	2558	-189	internal_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCAACCTACTGGGATGA	NA	NA	NA	NA	NA	NA	NA	NA	90896521	90893407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895250_90895353_90895926_90896046_90896357
ONT_simulated_read_3662320	chr3	+	327	5	ISM	ENSMUSG00000027750.17	ENST00000541481.5	2867	19	14934	697	14934	-115	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAACGATCTGATTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	54284980	54297758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_54285028_54292628_54292707_54293091_54293176_54296759_54296802_54297682
ONT_simulated_read_3662630	chr18	-	1596	1	NIC	ENSMUSG00000024370.18	novel	2084	17	NA	NA	17580	-877	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGCGCATAAGGGCTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	34767208	34765612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_34765600_34767200
ONT_simulated_read_3663123	chr11	-	1056	1	ISM	ENSMUSG00000020413.12	ENSMUST00000020683.10	4640	8	14288	2711	14288	-2711	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCCTGCTCCTGGATTG	NA	NA	NA	NA	NA	NA	NA	NA	8946903	8945847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_8945800_8946900
ONT_simulated_read_3664079	chr2	+	709	1	FSM	ENSMUSG00000082536.2	ENSMUST00000118928.2	1365	1	0	656	0	-656	mono-exon	FALSE	NA	NA	NA	NA	NA	392	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCGACTGCCCCTCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	40445763	40446472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_40445800_40446500
ONT_simulated_read_3664326	chr7	+	704	7	ISM	ENSMUSG00000030584.15	ENST00000414789.5	1735	12	3827	282	3827	-282	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCCCACCCGGTGTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	29012279	29016039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015668_29015751_29015905
ONT_simulated_read_3664843	chr16	+	498	1	ISM	ENSMUSG00000022516.11	ENSMUST00000230931.2	1618	3	0	1761	0	-1758	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGGACGTATCCCCATG	NA	NA	NA	NA	NA	NA	NA	NA	4756624	4757122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_4756600_4757100
ONT_simulated_read_366847	chr5	-	375	1	ISM	ENSMUSG00000105987.5	ENSMUST00000199941.5	2804	4	9341	2302	7100	-2302	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGGAGAATTACCAACCTA	NA	NA	NA	NA	NA	NA	NA	NA	23908323	23907948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_23907900_23908300
ONT_simulated_read_3670040	chr5	-	572	1	ISM	ENSMUSG00000029093.15	ENSMUST00000070720.8	2089	4	246602	763	246587	-763	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTCTTCATTTCCTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	36308881	36308309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_36308300_36308900
ONT_simulated_read_3671983	chr11	-	350	1	NIC	ENSMUSG00000044056.4	novel	754	4	NA	NA	3890	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGGAGGTAGTGATAACA	NA	NA	NA	NA	NA	NA	NA	NA	32473689	32473339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_32473300_32473700
ONT_simulated_read_3673097	chr19	+	610	3	ISM	ENSMUSG00000067242.12	ENSMUST00000196090.2	1789	6	36036	609	35893	-609	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTACATGCCTGGTACA	NA	NA	NA	NA	NA	NA	NA	NA	38289154	38294341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_38289326_38289608_38289774_38294067
ONT_simulated_read_3673949	chr7	+	815	2	ISM	ENSMUSG00000036826.15	ENSMUST00000172251.2	1224	4	0	698	0	-698	intron_retention	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTCTCAGCCTCAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	30265504	30266686	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_30265807_30266173
ONT_simulated_read_3675708	chr5	-	684	4	ISM	ENSMUSG00000001847.15	ENSMUST00000080537.14	4159	6	13250	3129	13207	-1281	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	309	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGCCTTCTTAAAGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	143500541	143492517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_143492861_143493081_143493242_143493850_143493914_143500423
ONT_simulated_read_367777	chr16	-	1511	7	ISM	ENSMUSG00000003166.21	ENSMUST00000066127.13	3790	9	32136	1879	32072	116	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCACTTATACCAAGTACA	NA	NA	NA	NA	NA	NA	NA	NA	17677385	17660103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17660642_17661835_17662073_17662846_17663000_17674615_17674793_17675121_17675199_17676223_17676435_17677267
ONT_simulated_read_3679107	chr4	-	622	6	ISM	ENSMUSG00000096351.3	ENSMUST00000217934.2	2413	10	211	2069	211	-1514	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGTTAGCTCGGCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	156339607	156333701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_156333731_156333841_156333958_156334794_156334958_156336402_156336538_156336683_156336771_156339515
ONT_simulated_read_3680944	chr3	+	751	3	ISM	ENSMUSG00000038393.15	ENSMUST00000074519.13	2827	8	3	2665	0	-2639	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGATTTTTTGTTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	96465275	96466534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_96465802_96466204_96466281_96466385
ONT_simulated_read_3681206	chr7	-	1457	10	ISM	ENSMUSG00000053158.11	ENST00000394300.7	2296	17	-8	3264	-8	-3264	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTTGTCCTGTTCAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	80037090	80030942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80031036_80031348_80031559_80032060_80032145_80032268_80032456_80032558_80032682_80032817_80032938_80033016_80033155_80033581_80033766_80033938_80034036_80036869
ONT_simulated_read_3683756	chr18	-	797	1	ISM	ENSMUSG00000024420.10	ENSMUST00000025288.9	6206	8	125698	159280	124631	-157421	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGCACGACTCCAGACTC	NA	NA	NA	NA	NA	NA	NA	NA	13980146	13979349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_13979300_13980100
ONT_simulated_read_3685551	chr11	-	314	2	ISM	ENSMUSG00000018537.17	ENSMUST00000103149.9	817	5	1382	318	1382	-206	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAACTGCCGCTGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	97581851	97580935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97581185_97581786
ONT_simulated_read_3687192	chr1	+	1669	1	ISM	ENSMUSG00000079144.8	ENSMUST00000160822.3	3793	3	7670	448	2136	-448	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTTTCAATTATTCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	192858023	192859692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_192858000_192859700
ONT_simulated_read_3688206	chr4	-	493	4	ISM	ENSMUSG00000028741.14	ENSMUST00000030513.13	930	8	3564	147	3564	-147	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	138	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACCCTGCCCCCGGACTG	NA	NA	NA	NA	NA	NA	NA	NA	139076045	139074902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_139075114_139075231_139075309_139075631_139075784_139075992
ONT_simulated_read_3689451	chr16	-	688	1	ISM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	11052	1836	5452	256	mono-exon	FALSE	NA	NA	NA	NA	NA	264	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGCTGTAGCACAGTAAC	NA	NA	NA	NA	NA	NA	NA	NA	8478967	8478279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_8478300_8479000
ONT_simulated_read_3693030	chr6	-	286	2	ISM	ENSMUSG00000030278.12	ENSMUST00000113091.8	785	6	6242	2597	8	0	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCACTGCTACAAGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	113405483	113405114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113405273_113405355
ONT_simulated_read_3693982	chr1	-	238	1	ISM	ENSMUSG00000026674.10	ENSMUST00000194690.6	8590	18	132573	5444	110956	53	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGACAGAGAATTAGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	169805557	169805319	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_169805300_169805600
ONT_simulated_read_3695386	chr19	+	494	6	ISM	ENSMUSG00000024911.8	ENSMUST00000225141.2	1209	10	2589	91	2576	-89	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTGGCTGCCTTCTGCGCC	NA	NA	NA	NA	NA	NA	NA	NA	5513232	5514988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_5513333_5513631_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
ONT_simulated_read_3695793	chr6	+	2229	7	FSM	ENSMUSG00000033174.18	ENST00000453507.6	2255	7	26	0	26	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTCGATGCATGTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	88702058	88804043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_88702161_88702682_88702828_88741577_88741685_88784992_88785130_88786317_88786429_88800172_88800389_88802632
ONT_simulated_read_3696138	chr2	-	373	1	NIC	ENSMUSG00000009549.15	novel	798	5	NA	NA	3327	-86	mono-exon	FALSE	NA	NA	NA	NA	NA	405	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTCTAGATGGTACAGTT	NA	NA	NA	NA	NA	NA	NA	NA	118306789	118306416	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_118306400_118306800
ONT_simulated_read_369664	chr14	-	177	2	ISM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	8947	184	8947	-184	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTATCCGGACGGCATCA	NA	NA	NA	NA	NA	NA	NA	NA	52533638	52532481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52532551_52533530
ONT_simulated_read_3700039	chr8	-	403	1	ISM	ENSMUSG00000031754.11	ENSMUST00000034204.11	5010	7	17344	3789	17319	163	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTACAGGTGTTTGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	94746315	94745912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_94745900_94746300
ONT_simulated_read_3700839	chr6	-	886	6	ISM	ENSMUSG00000001642.19	ENSMUST00000102980.11	1387	10	6842	0	6842	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1964	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTGGTGGTCCGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	34287571	34280868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_34281275_34283474_34283558_34285913_34285998_34286510_34286593_34286895_34287003_34287447
ONT_simulated_read_3701173	chr3	-	1950	1	ISM	ENSMUSG00000040151.10	ENSMUST00000043325.9	6177	7	135496	3030	30603	-3030	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGCCAGGATTCAGATT	NA	NA	NA	NA	NA	NA	NA	NA	144140446	144138496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_144138500_144140400
ONT_simulated_read_3703251	chr11	-	1636	1	ISM	ENSMUSG00000018412.17	ENSMUST00000106977.8	5510	14	107111	316	106522	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGGAAAAATGAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	104226006	104224370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_104224400_104226000
ONT_simulated_read_3703252	chr13	-	441	1	NIC	ENSMUSG00000021427.11	novel	1825	10	NA	NA	14307	218	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTGAGGGAATAATTTG	NA	NA	NA	NA	NA	NA	NA	NA	38163752	38163311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_38163300_38163800
ONT_simulated_read_3703610	chr18	-	916	2	ISM	ENSMUSG00000024378.10	ENSMUST00000025236.9	5097	6	8703	3654	3068	396	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATATTTGTGTCCTTAT	NA	NA	NA	NA	NA	NA	NA	NA	33338212	33336061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_33336869_33338103
ONT_simulated_read_3704043	chr16	-	637	3	ISM	ENSMUSG00000022538.21	ENSMUST00000117363.9	3180	14	14222	8850	14222	-8850	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGCATTTCCAGGTATG	NA	NA	NA	NA	NA	NA	NA	NA	30392188	30388161	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_30388249_30389982_30390355_30392010
ONT_simulated_read_3704271	chr3	-	735	2	ISM	ENSMUSG00000028005.14	ENST00000652626.1	3148	13	39650	616	39650	-613	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAATTCCCTTCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	81941729	81939964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_81940589_81941618
ONT_simulated_read_370865	chr10	+	2048	10	ISM	ENSMUSG00000037608.17	ENSMUST00000185800.7	3142	13	11183	57	1707	-57	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATAGACTGTATGT	NA	NA	NA	NA	NA	NA	NA	NA	20199465	20215952	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454_20215668_20215797
ONT_simulated_read_3720442	chr18	-	697	6	ISM	ENSMUSG00000056671.8	ENSMUST00000235606.2	868	7	13580	0	13532	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTTTCTCCAAATGT	NA	NA	NA	NA	NA	NA	NA	NA	42070727	42008664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_42008919_42014277_42014351_42045434_42045541_42065665_42065827_42068232_42068307_42070698
ONT_simulated_read_3720637	chr12	-	788	9	ISM	ENSMUSG00000061533.17	ENST00000216517.10	1445	13	19903	4631	19903	-4631	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAGCAGAAGGTGACCAAA	NA	NA	NA	NA	NA	NA	NA	NA	91331208	91260914	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_91260941_91262976_91263052_91265764_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314416_91315523_91315651_91331133
ONT_simulated_read_3721359	chr3	-	1039	6	ISM	ENSMUSG00000038256.16	ENSMUST00000046521.14	6102	10	5521	7001	15	-6035	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCTCCCGCCAACCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	97129159	97117978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_97118033_97120187_97120288_97121000_97121191_97122427_97122745_97123628_97123942_97129094
ONT_simulated_read_3721573	chr7	-	284	1	NIC	ENSMUSG00000092534.9	novel	693	5	NA	NA	1026	-13695	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGGCTCCCAGCGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	126614630	126614346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_126614300_126614600
ONT_simulated_read_3725270	chr5	-	849	5	ISM	ENSMUSG00000029147.12	ENSMUST00000031032.11	2307	10	122	3489	0	-3489	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGGACCTTCCTGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	31377909	31363500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_31363798_31364906_31365040_31365356_31365443_31365730_31365801_31377646
ONT_simulated_read_372849	chr9	-	320	1	ISM	ENSMUSG00000059495.15	ENSMUST00000165665.9	10752	41	136813	5012	136312	-1557	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTATTTGACTTCATT	NA	NA	NA	NA	NA	NA	NA	NA	42880469	42880149	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_42880100_42880500
ONT_simulated_read_3729221	chr16	-	563	1	ISM	ENSMUSG00000022962.16	ENSMUST00000023684.14	3518	22	25204	0	25177	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTGAGGGCACTTAGAG	NA	NA	NA	NA	NA	NA	NA	NA	91418636	91418073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_91418100_91418600
ONT_simulated_read_3731085	chr4	-	1208	1	ISM	ENSMUSG00000035696.16	ENSMUST00000098098.9	5061	11	37962	2229	29297	981	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCCATGGGCAACAATGGT	NA	NA	NA	NA	NA	NA	NA	NA	44129646	44128438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_44128400_44129600
ONT_simulated_read_3732060	chr15	+	1166	8	ISM	ENSMUSG00000022546.6	ENSMUST00000023203.6	1792	11	33	854	33	-816	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATGGTGGTCAGTCCGCC	NA	NA	NA	NA	NA	NA	NA	NA	76580965	76583032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76581220_76581358_76581449_76581521_76581631_76581741_76581876_76582039_76582284_76582502_76582583_76582655_76582793_76582914
ONT_simulated_read_3732379	chr15	+	901	7	ISM	ENSMUSG00000022556.12	ENSMUST00000227478.2	2084	13	20564	344	20435	-340	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAGTTGTCAGGCTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	76382208	76384828	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384330_76384397_76384466_76384537_76384616
ONT_simulated_read_3732484	chr2	-	1262	4	ISM	ENSMUSG00000052406.15	ENSMUST00000064244.11	2281	8	5830	0	5830	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTGTGTGGAAGTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	26848568	26843574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490
ONT_simulated_read_3733534	chr19	+	906	4	ISM	ENSMUSG00000024817.14	ENSMUST00000025739.14	3536	16	76	22411	76	-22411	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAATGAACTAAATGTTG	NA	NA	NA	NA	NA	NA	NA	NA	30007988	30048711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_30008332_30016463_30016698_30033634_30033895_30048642
ONT_simulated_read_373360	chr5	-	1452	17	ISM	ENSMUSG00000029705.18	ENST00000393824.7	2255	22	203968	288	202114	-288	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	259	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGCTGCCCCCTCCCCT	NA	NA	NA	NA	NA	NA	NA	NA	136392149	136277740	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355787_136361477_136361583_136368942_136368992_136388855_136388923_136392112
ONT_simulated_read_3736369	chr9	-	645	7	ISM	ENSMUSG00000048537.17	ENST00000600882.6	5234	22	29334	1322	3888	-1322	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGCAGAGGCCATGCGCA	NA	NA	NA	NA	NA	NA	NA	NA	44609142	44598930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44598996_44599720_44599754_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609048
ONT_simulated_read_3738201	chr17	-	579	3	ISM	ENSMUSG00000016946.7	ENSMUST00000017090.6	2443	6	15674	1329	15674	-1329	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCAGGAGGGAGGGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	24276785	24268036	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24268419_24274898_24275025_24276714
ONT_simulated_read_3738940	chr2	-	945	3	ISM	ENSMUSG00000049252.18	ENST00000389484.8	15286	89	1360391	1119	26949	-829	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGACATAATTTGCATGAA	NA	NA	NA	NA	NA	NA	NA	NA	40490399	40486374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_40487087_40488424_40488524_40490265
ONT_simulated_read_3739896	chr11	-	939	8	ISM	ENSMUSG00000038909.17	ENSMUST00000092766.12	3414	15	3433	9944	3433	-8530	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCCAAATCACAGAGGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	95196995	95175028	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874
ONT_simulated_read_3741850	chr15	+	812	8	ISM	ENSMUSG00000008690.16	ENSMUST00000074552.12	3299	20	27	8130	27	-8130	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGAAGAGAGTACCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	89239965	89248899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815
ONT_simulated_read_3743773	chr10	-	996	1	NIC	ENSMUSG00000035835.15	novel	3063	9	NA	NA	8413	-381	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGTAGCTATGAGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	79701991	79700995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_79701000_79702000
ONT_simulated_read_3744380	chr9	-	1312	1	NIC	ENSMUSG00000043923.9	novel	1725	11	NA	NA	4993	-357	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGTGTGTTTTTTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	44324325	44323013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_44323000_44324300
ONT_simulated_read_3744834	chr16	-	1225	7	ISM	ENSMUSG00000022876.19	ENSMUST00000114239.9	1890	8	20519	464	21	-36	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTATGTGTTAAAGTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	75685679	75656144	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_75656528_75667655_75667807_75670333_75670541_75673313_75673466_75675984_75676115_75680764_75680915_75685627
ONT_simulated_read_3746777	chr1	-	593	1	ISM	ENSMUSG00000016179.12	ENST00000361322.3	2431	13	23084	223	14962	-222	mono-exon	FALSE	NA	NA	NA	NA	NA	530	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTATGGACTGTGAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	193029469	193028876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_193028900_193029500
ONT_simulated_read_3747470	chr7	-	1529	1	ISM	ENSMUSG00000040177.11	ENSMUST00000059438.11	6773	6	18989	4022	18989	-4022	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAGAGAAAAGCCAGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	130945499	130943970	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_130944000_130945500
ONT_simulated_read_3749018	chr10	-	1956	16	NNC	ENSMUSG00000020115.4	novel	2231	18	NA	NA	6697	1	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGTGCTTTGGGGTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	121407930	121382812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_121383094_121387155_121387228_121387391_121387499_121388104_121388198_121388312_121388415_121388933_121388974_121389649_121389727_121389807_121389930_121391891_121391971_121395751_121395844_121396145_121396205_121397481_121397679_121399830_121400011_121403933_121404045_121406535_121406697_121407747
ONT_simulated_read_3749855	chr4	-	574	1	ISM	ENSMUSG00000063077.16	ENSMUST00000238956.2	10434	50	126883	3917	126697	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTCTTCTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	149265266	149264692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_149264700_149265300
ONT_simulated_read_3751424	chr8	-	774	4	ISM	ENSMUSG00000031616.8	ENST00000506066.1	949	5	48791	-258	48791	258	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGATGATGGTTCAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	78398275	78391344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_78391746_78393951_78394061_78394427_78394562_78398145
ONT_simulated_read_3752194	chr9	+	678	2	NIC	ENSMUSG00000096385.8	novel	672	4	NA	NA	0	0	intron_retention	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTCCATGTCCTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	3004456	3005194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_3005010_3005069
ONT_simulated_read_3752559	chr7	+	671	5	FSM	ENSMUSG00000002603.16	ENST00000677934.1	1081	5	279	131	279	-131	multi-exon	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGCCCCGCCCCGCCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	25387572	25404370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_25387649_25391801_25391963_25393647_25393766_25403549_25403704_25404208
ONT_simulated_read_3753284	chr9	+	750	5	ISM	ENSMUSG00000032363.16	ENST00000613213.4	4431	19	21504	298	21504	-194	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGCTGCCGTTCATGTCC	NA	NA	NA	NA	NA	NA	NA	NA	90077180	90081849	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_90077364_90077729_90077904_90077983_90078131_90079052_90079216_90081766
ONT_simulated_read_3753476	chr8	-	737	5	ISM	ENSMUSG00000034416.19	ENST00000525539.5	7383	43	58348	21246	58348	-21246	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCACCGACATCTGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	117750834	117743675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_117743743_117746143_117746282_117747778_117747873_117748556_117748762_117750601
ONT_simulated_read_3756376	chr16	-	1018	9	ISM	ENSMUSG00000037965.16	ENSMUST00000037633.16	3825	23	27883	848	27883	-848	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAATGCTGAACTTCA	NA	NA	NA	NA	NA	NA	NA	NA	10966374	10955303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308
ONT_simulated_read_3759221	chr8	+	1053	7	ISM	ENSMUSG00000010936.12	ENSMUST00000034190.11	3069	19	13	84951	13	-84951	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCAACATCCTGGTGATC	NA	NA	NA	NA	NA	NA	NA	NA	111345243	111362079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008
ONT_simulated_read_376267	chr5	+	1023	6	ISM	ENSMUSG00000029094.13	ENST00000420658.6	2441	16	48638	0	48638	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGACCCCTGGCAGGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	36141531	36155027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_36141651_36144398_36144666_36146897_36147013_36150884_36151050_36153300_36153492_36154861
ONT_simulated_read_3764436	chr7	-	1045	4	ISM	ENSMUSG00000059981.13	ENST00000279394.7	4274	19	12633	830	12633	-829	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCAGTGGTGAGAACGTC	NA	NA	NA	NA	NA	NA	NA	NA	126470813	126465678	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126466088_126466168_126466352_126467281_126467495_126470573
ONT_simulated_read_3764448	chr5	-	2082	7	ISM	ENSMUSG00000029560.13	ENSMUST00000196130.5	2547	10	6901	2	6901	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGGTTTCCACGCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	140339269	140326057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187
ONT_simulated_read_3768584	chr11	-	236	1	FSM	ENSMUSG00002076556.1	ENSMUST00020182120.1	236	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGCAGTCAAGAGTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	3595521	3595285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_3595300_3595500
ONT_simulated_read_3770637	chr14	-	200	1	ISM	ENSMUSG00000042354.8	ENSMUST00000037739.8	1947	15	6520	0	6520	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	NA	NA	NA	NA	NA	NA	NA	30734589	30734389	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_30734400_30734600
ONT_simulated_read_3773810	chr13	+	874	6	FSM	ENSMUSG00000021483.9	ENST00000375871.8	856	6	-18	0	-18	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGTCCAGGCCTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	64580391	64586794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_64580485_64580790_64580905_64583931_64584121_64584306_64584429_64585690_64585847_64586594
ONT_simulated_read_3775601	chr17	+	547	5	FSM	ENSMUSG00000025731.17	ENST00000397666.6	544	5	3	-6	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTCTGTCAAAAGTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	26094503	26095971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095634_26095714_26095923
ONT_simulated_read_3776896	chr12	+	1151	6	ISM	ENSMUSG00000012609.20	ENSMUST00000110224.8	4647	32	114411	237	39998	-237	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCATCTGGCTTTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	85986162	86100296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_85986285_86003339_86003495_86042774_86042971_86059421_86059637_86067294_86067378_86099916
ONT_simulated_read_3776958	chr11	-	983	8	ISM	ENSMUSG00000069631.15	ENST00000579340.5	1078	9	6381	-1	4	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTAGGGGCTGCAGCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	106078004	106055503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106055788_106058637_106058743_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106075387_106075446_106077926
ONT_simulated_read_3777580	chr8	+	1115	6	ISM	ENSMUSG00000031570.18	ENSMUST00000068916.16	1483	7	301	182	274	-182	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAATTAGGGATATTA	NA	NA	NA	NA	NA	NA	NA	NA	26210364	26214732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
ONT_simulated_read_3778873	chr16	-	769	1	ISM	ENSMUSG00000022781.9	ENSMUST00000023467.9	5741	15	59079	3205	59079	-3205	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAATCTATATTTATAAC	NA	NA	NA	NA	NA	NA	NA	NA	31839081	31838312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_31838300_31839100
ONT_simulated_read_377999	chr5	+	1437	4	ISM	ENSMUSG00000050017.12	ENSMUST00000086635.9	2761	12	49406	762	49362	-762	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGATCACGTCCAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	111528034	111535463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_111528169_111530853_111530977_111533385_111533471_111534368
ONT_simulated_read_378011	chr12	+	592	6	ISM	ENSMUSG00000112449.2	ENSMUST00000110708.4	3646	16	317	17365	317	-17365	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATATGTGCAGATACATTC	NA	NA	NA	NA	NA	NA	NA	NA	55202205	55218993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_55202366_55211014_55211125_55211980_55212073_55213093_55213179_55217659_55217765_55218953
ONT_simulated_read_3783045	chr10	-	1318	10	ISM	ENSMUSG00000036112.16	ENSMUST00000181217.8	1984	11	2714	388	2641	-377	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAAGCTTTGTTGGAACA	NA	NA	NA	NA	NA	NA	NA	NA	93722932	93697178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715535_93715934_93716001_93722855
ONT_simulated_read_3783975	chr5	-	1760	12	ISM	ENSMUSG00000037936.16	ENSMUST00000086075.13	2521	13	36787	378	36764	-376	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTAGGGGCTGGGCATAT	NA	NA	NA	NA	NA	NA	NA	NA	125381371	125354528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_125354930_125358168_125358298_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258
ONT_simulated_read_3784269	chr6	-	1366	1	ISM	ENSMUSG00000038521.18	ENSMUST00000160505.8	2946	12	10608	3	10608	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCTGGTCTGCTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	124508672	124507306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124507300_124508700
ONT_simulated_read_378504	chr5	-	2533	3	ISM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	41702	68	41702	-68	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCCCGCCCCCGCCCCAT	NA	NA	NA	NA	NA	NA	NA	NA	64084538	64066307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_64068495_64082077_64082217_64084331
ONT_simulated_read_3785651	chr9	+	462	4	ISM	ENSMUSG00000032604.17	ENSMUST00000134939.9	2374	23	6691	0	6691	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCTCTCTGTTGTCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	108391949	108393140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108392073_108392165_108392233_108392305_108392432_108392994
ONT_simulated_read_3791651	chr14	-	904	9	ISM	ENSMUSG00000021884.19	ENST00000628377.2	1677	15	9904	5358	9868	-5358	internal_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGGCTAAAGACAGAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	31352967	31337415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917
ONT_simulated_read_3791838	chr8	-	984	6	ISM	ENSMUSG00000031774.9	ENSMUST00000034226.8	2873	8	55	8795	55	-8795	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTTCTCCCAGGCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	95328570	95309560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124
ONT_simulated_read_3796022	chr3	-	229	2	ISM	ENSMUSG00000034317.15	ENSMUST00000107802.8	2939	3	941	2539	941	-2539	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATTATTGAAATTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	68951147	68945159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_68945342_68951100
ONT_simulated_read_3799656	chr10	-	629	1	ISM	ENSMUSG00000019806.14	ENSMUST00000162610.8	1554	6	221298	0	221140	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGTCTGCACTGTTCA	NA	NA	NA	NA	NA	NA	NA	NA	13523426	13522797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_13522800_13523400
ONT_simulated_read_3801441	chr11	-	1282	14	ISM	ENSMUSG00000057897.15	ENST00000346990.8	1446	16	50033	0	50030	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCCTCCCCTGGTGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	5965508	5921734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449
ONT_simulated_read_3801615	chr7	-	247	1	ISM	ENSMUSG00000030737.18	ENSMUST00000032985.11	4381	14	51166	2124	35635	151	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGGTATCGGAAGCACCAC	NA	NA	NA	NA	NA	NA	NA	NA	99309381	99309134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_99309100_99309400
ONT_simulated_read_3801984	chr4	+	292	1	ISM	ENSMUSG00000043252.9	ENSMUST00000062684.9	4670	3	0	20631	0	-20626	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGCGGCGGCGGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	15265830	15266122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_15265800_15266100
ONT_simulated_read_3802054	chr1	-	484	5	ISM	ENSMUSG00000013593.13	ENSMUST00000013737.13	1623	13	8245	2385	8245	-2364	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGCGAATCATTGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	171066446	171064806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_171064839_171065513_171065634_171065855_171065942_171066083_171066162_171066278
ONT_simulated_read_3809083	chr6	-	1197	9	ISM	ENSMUSG00000051586.18	ENST00000414725.6	2891	20	17424	0	17424	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGCCCGTGGTTTGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	121001796	120959486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_120959689_120978568_120978657_120979747_120979837_120985955_120986143_120996656_120996741_120998143_120998318_120999186_120999250_120999344_120999458_121001599
ONT_simulated_read_3811030	chr5	+	355	5	ISM	ENSMUSG00000029465.15	ENSMUST00000102525.11	899	7	44	2023	44	-1907	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACGCTAGGAATCACCAA	NA	NA	NA	NA	NA	NA	NA	NA	122529984	122542219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_122530061_122534879_122534980_122539709_122539787_122541421_122541491_122542186
ONT_simulated_read_3811673	chr5	-	1993	5	ISM	ENSMUSG00000029623.15	ENSMUST00000031627.9	2353	6	3280	53	3280	-53	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCCTGTCAAACCTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	145073768	145065631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_145067186_145068174_145068327_145069668_145069791_145071874_145071983_145073711
ONT_simulated_read_3812057	chr9	-	83	1	ISM	ENSMUSG00000057367.13	ENSMUST00000190341.7	3331	8	18163	585	15440	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGAAGTGCCCCATCTGC	NA	NA	NA	NA	NA	NA	NA	NA	7818895	7818812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_7818800_7818900
ONT_simulated_read_3812135	chr18	+	1311	8	ISM	ENSMUSG00000024382.14	ENSMUST00000025241.7	2708	15	54	21748	54	-21748	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAGAGTCATGGAGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	32373406	32381456	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_32373475_32373682_32373889_32376016_32376254_32377851_32377902_32378541_32378678_32378804_32378973_32379619_32379825_32381215
ONT_simulated_read_3815436	chr4	-	552	3	ISM	ENSMUSG00000040728.16	ENST00000646773.1	3020	15	26612	21016	26607	-20313	internal_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACACAGCCTACTATCC	NA	NA	NA	NA	NA	NA	NA	NA	11359944	11353317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_11353464_11357459_11357659_11359737
ONT_simulated_read_3816101	chrX	-	2045	10	ISM	ENSMUSG00000031328.17	ENSMUST00000101454.9	8345	46	18298	-2	18236	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTTTCATGGAAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	73271842	73267066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_73267584_73268357_73268562_73268645_73268865_73269003_73269181_73269807_73269941_73270466_73270583_73270803_73270942_73271096_73271364_73271457_73271581_73271691
ONT_simulated_read_3818882	chr4	+	636	2	ISM	ENSMUSG00000028788.15	ENSMUST00000030578.14	3646	6	0	10746	0	-8718	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTACACTTTTAACTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	129714013	129733025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_129714395_129732770
ONT_simulated_read_3819394	chr9	-	350	4	ISM	ENSMUSG00000043987.19	ENSMUST00000213154.2	6105	32	45240	7446	45240	-7446	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGGCAGGCTGCTCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	45689785	45687001	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_45687044_45687162_45687247_45688080_45688225_45689705
ONT_simulated_read_3821409	chr6	+	839	5	ISM	ENSMUSG00000058440.15	ENSMUST00000069808.13	1658	10	26226	0	26201	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATATGTATGGTTTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	30116113	30144854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
ONT_simulated_read_3823623	chr15	+	2999	6	ISM	ENSMUSG00000033237.20	ENSMUST00000096250.5	8507	21	91241	631	91241	-631	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACCATCCTGTCACCTCA	NA	NA	NA	NA	NA	NA	NA	NA	96276694	96302242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_96276844_96288756_96288896_96288984_96289071_96290235_96290360_96290453_96290546_96299833
ONT_simulated_read_3825825	chr8	-	996	7	ISM	ENSMUSG00000004994.13	ENSMUST00000005120.12	1441	9	5984	201	5984	-201	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGACTCAGAGAGCGAGTA	NA	NA	NA	NA	NA	NA	NA	NA	84990992	84985130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_84985556_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937
ONT_simulated_read_3826559	chr4	-	872	1	ISM	ENSMUSG00000029073.10	ENSMUST00000030950.8	2662	3	2592	1254	2592	-1254	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCCAGCATGCCCAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	155951305	155950433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_155950400_155951300
ONT_simulated_read_3827056	chr10	-	167	1	ISM	ENSMUSG00000009647.14	ENST00000536019.5	3106	8	125	168946	125	-167335	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTCAGGAGGCAAACACCA	NA	NA	NA	NA	NA	NA	NA	NA	59451920	59451753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_59451800_59451900
ONT_simulated_read_3831413	chrX	+	668	3	ISM	ENSMUSG00000025332.15	ENST00000404049.7	5646	26	38624	636	38360	-618	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGGAGGTGGGCGGGT	NA	NA	NA	NA	NA	NA	NA	NA	151054908	151056146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_151054935_151055070_151055271_151055704
ONT_simulated_read_3833813	chr6	-	633	6	ISM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	11101	4866	8054	-40	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCACAGAGTGAAGAAGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	87804679	87796116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565
ONT_simulated_read_3834156	chr9	-	205	2	ISM	ENSMUSG00000060510.15	ENSMUST00000068296.8	2266	9	14539	6938	14539	-6938	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGACAACCAGGCAAATTGT	NA	NA	NA	NA	NA	NA	NA	NA	20418165	20417298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_20417362_20418023
ONT_simulated_read_3834606	chr6	-	481	3	ISM	ENSMUSG00000053768.14	ENST00000448878.6	1009	8	207953	-22	207953	22	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	2468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTCCACCCCACCTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	32829151	32769588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_32769862_32780824_32780961_32829079
ONT_simulated_read_383502	chr10	+	2594	19	ISM	ENSMUSG00000019984.17	ENST00000368053.8	2655	20	554	0	554	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTACCATGCAGTGATG	NA	NA	NA	NA	NA	NA	NA	NA	24746541	24778391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_24746650_24749370_24749496_24750467_24750580_24751493_24751593_24752837_24752940_24754286_24754357_24755570_24755684_24758451_24758548_24759101_24759120_24764297_24764499_24767016_24767161_24768411_24768558_24769512_24769759_24771603_24771747_24773082_24773258_24774307_24774472_24776593_24776719_24777900_24778107_24778190
ONT_simulated_read_3835886	chr6	-	1154	8	ISM	ENSMUSG00000029759.10	ENSMUST00000031773.9	1837	9	1720	529	1720	182	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGTGTCCTTTACTGTA	NA	NA	NA	NA	NA	NA	NA	NA	5254566	5221380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_5221723_5230400_5230530_5230748_5230831_5232323_5232525_5236871_5236999_5240812_5240979_5246277_5246334_5254515
ONT_simulated_read_3837679	chr3	+	688	4	ISM	ENSMUSG00000027763.14	ENST00000465907.6	945	7	0	9476	0	-9476	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTTTCCAATACCAACAG	NA	NA	NA	NA	NA	NA	NA	NA	60437051	60523125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_60437226_60503014_60503186_60520683_60520942_60523040
ONT_simulated_read_3837735	chr6	-	713	7	ISM	ENSMUSG00000030353.16	ENSMUST00000006311.13	3076	12	29690	16267	4454	-15229	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTCGGCTTTCCTGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	128248086	128220372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_128220473_128223283_128223340_128223780_128223825_128224922_128225052_128228502_128228566_128228884_128228950_128247830
ONT_simulated_read_3843260	chr10	+	597	3	FSM	ENSMUSG00000035620.16	ENST00000549643.5	576	3	-21	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCAACATTGAGGCATTCA	NA	NA	NA	NA	NA	NA	NA	NA	84753519	84851221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_84753690_84827983_84828129_84850939
ONT_simulated_read_3843917	chr4	-	1045	4	ISM	ENSMUSG00000028960.21	ENSMUST00000239095.2	5081	30	90693	459	90693	96	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTGTGCCTGCGACAAG	NA	NA	NA	NA	NA	NA	NA	NA	149419749	149413652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_149414195_149414647_149414795_149415779_149415955_149419568
ONT_simulated_read_384694	chr15	-	1021	6	ISM	ENSMUSG00000063354.8	ENST00000276833.9	1215	7	-4	289	-4	-289	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	478	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAGGGCGAGGCTTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	76498859	76497023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76497143_76497403_76497557_76497656_76497712_76497797_76498146_76498256_76498430_76498686
ONT_simulated_read_3849903	chr7	-	1094	10	ISM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	52011	26689	52011	-26689	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGACCAAAGTGATCAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	80401153	80388019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80388071_80388420_80388491_80388580_80388653_80388742_80388827_80389537_80389709_80392783_80392927_80393540_80393709_80393865_80393957_80398571_80398736_80401073
ONT_simulated_read_3851390	chr17	-	1907	1	ISM	ENSMUSG00000062202.15	ENSMUST00000168787.8	7058	11	356357	2701	351699	1831	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGATGAGCTAGAGCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	30439105	30437198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_30437200_30439100
ONT_simulated_read_3852712	chr15	+	591	1	ISM	ENSMUSG00000022351.15	ENSMUST00000022977.14	2758	11	26	15495	0	-15495	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGTTGCCCCGAACCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	59186955	59187546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_59187000_59187500
ONT_simulated_read_3853340	chr15	-	1915	8	ISM	ENSMUSG00000009035.16	ENSMUST00000178522.3	3314	9	24231	1301	24231	-1282	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGGGGCAGAGCCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	79262888	79246185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79247086_79249484_79249680_79249986_79250157_79250786_79250879_79253869_79253946_79254097_79254189_79261246_79261413_79262663
ONT_simulated_read_385357	chr4	-	671	5	ISM	ENSMUSG00000028898.16	ENSMUST00000030730.14	1130	9	7750	0	7701	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	132049099	132039073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989
ONT_simulated_read_3854926	chr11	-	1210	8	ISM	ENSMUSG00000032633.13	ENSMUST00000091246.11	2768	13	4837	3423	4837	-3423	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGGCCTATCGCTGCAAC	NA	NA	NA	NA	NA	NA	NA	NA	59695577	59686038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_59686091_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346
ONT_simulated_read_385746	chr9	-	706	6	FSM	ENSMUSG00000031938.16	ENST00000617482.4	726	6	20	0	20	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	643	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATGGTTAGCTAAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	15209219	15196105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_15196288_15198651_15198769_15201962_15202113_15205727_15205830_15205981_15206056_15209138
ONT_simulated_read_3860822	chr16	-	509	1	ISM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	23508	1105	23508	-1105	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTGAAGTTATTTTAGGT	NA	NA	NA	NA	NA	NA	NA	NA	38347112	38346603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_38346600_38347100
ONT_simulated_read_3861368	chr2	-	1767	6	ISM	ENSMUSG00000026872.19	ENST00000638007.1	9123	9	937	13850	937	-8631	internal_fragment	FALSE	canonical	NA	NA	NA	NA	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCAACCTCATGAAAACAT	NA	NA	NA	NA	NA	NA	NA	NA	44913117	44887084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_44888008_44888895_44889005_44891611_44891827_44892527_44892717_44907408_44907481_44912858
ONT_simulated_read_386312	chr16	-	1406	4	NNC	ENSMUSG00000022661.15	novel	2347	6	NA	NA	11609	-579	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGATAGTGTGAAGTAACA	NA	NA	NA	NA	NA	NA	NA	NA	45217629	45203124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr16_-_45203821_45212607_45212752_45214955_45215224_45217331
ONT_simulated_read_3864601	chr12	-	759	1	FSM	ENSMUSG00000066553.6	ENSMUST00000140065.2	342	1	0	-417	0	417	mono-exon	FALSE	NA	NA	NA	NA	NA	1686	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACCCTAGGGATTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	24689009	24688250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_24688200_24689000
ONT_simulated_read_386488	chr15	-	1209	2	ISM	ENSMUSG00000022361.15	ENSMUST00000070143.13	4764	4	7049	6671	6825	-6671	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTGGATAACAATCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	57932816	57917371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_57918479_57932714
ONT_simulated_read_3865687	chr4	-	844	3	NIC	ENSMUSG00000040520.8	novel	4867	5	NA	NA	380	-143	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	257	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGATATACCTGGATTACCGG	NA	NA	NA	NA	NA	NA	NA	NA	26340617	26327775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_26328309_26336620_26336731_26340416
ONT_simulated_read_386675	chr10	+	2255	17	NNC	ENSMUSG00000044005.14	novel	2271	17	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAATTATAATTTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	128030505	128045803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_+_128030777_128035050_128035151_128035505_128035628_128036754_128036835_128037074_128037239_128037427_128037487_128039691_128039725_128039943_128040003_128040529_128040597_128040729_128040781_128040956_128041134_128042740_128042873_128043169_128043260_128043429_128043492_128044459_128044537_128044974_128045039_128045156
ONT_simulated_read_3867153	chr18	+	330	3	ISM	ENSMUSG00000024277.15	ENSMUST00000025127.5	4026	7	119	40121	119	-6901	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAGTATATTCACAACTT	NA	NA	NA	NA	NA	NA	NA	NA	23937159	23986793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_23937279_23965909_23966038_23986710
ONT_simulated_read_3868757	chr8	+	1478	15	ISM	ENSMUSG00000018796.14	ENST00000507295.5	2376	19	34	3799	0	-3455	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGAAGCCCTGGATAAAG	NA	NA	NA	NA	NA	NA	NA	NA	46945868	46984062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_46946064_46958685_46958804_46961369_46961435_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006
ONT_simulated_read_3868936	chr14	+	504	1	NIC	ENSMUSG00000022010.20	novel	4999	5	NA	NA	0	-89647	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCCGGAGTCCACCGCCG	NA	NA	NA	NA	NA	NA	NA	NA	76653026	76653530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_+_76653000_76653500
ONT_simulated_read_386899	chr1	-	530	1	FSM	ENSMUSG00000089782.2	ENSMUST00000162698.2	489	1	0	-41	0	41	mono-exon	FALSE	NA	NA	NA	NA	NA	1405	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAGCTGCTATTTTATAT	NA	NA	NA	NA	NA	NA	NA	NA	97877114	97876584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_97876600_97877100
ONT_simulated_read_3869337	chr1	-	131	2	ISM	ENSMUSG00000007097.15	ENST00000392233.7	3194	23	21997	40	21997	-40	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCGGAGGGGTTGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	172103543	172102224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_172102297_172103484
ONT_simulated_read_3869636	chr14	+	555	4	ISM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	10616	1575	10535	-1575	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTGATGTTTCATAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	29710909	29713601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_29711006_29711616_29711758_29712660_29712926_29713548
ONT_simulated_read_3870810	chr16	-	553	5	ISM	ENSMUSG00000022538.21	ENSMUST00000117363.9	3180	14	18352	1330	18352	-1330	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGTTACAAGCCCGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	30388058	30380641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386653_30387922
ONT_simulated_read_3872503	chr9	-	1028	1	ISM	ENSMUSG00000032340.9	ENSMUST00000068664.7	7379	29	159084	1643	158837	225	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTTATAAATTCTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	58784640	58783612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_58783600_58784600
ONT_simulated_read_3873503	chr12	+	623	5	ISM	ENSMUSG00000011179.9	ENSMUST00000171737.3	2208	12	178	3099	178	-3099	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAGAGGGTTATCTATGC	NA	NA	NA	NA	NA	NA	NA	NA	17594972	17597986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_17595170_17597096_17597195_17597283_17597402_17597633_17597808_17597950
ONT_simulated_read_3873586	chr10	+	846	1	ISM	ENSMUSG00000025354.6	ENSMUST00000217745.2	4133	7	12616	244	12494	-244	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAGGAGAAAAGAATTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	128654038	128654884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_128654000_128654900
ONT_simulated_read_3874553	chr7	+	857	9	ISM	ENSMUSG00000053898.13	ENSMUST00000066264.13	1267	10	741	130	741	-130	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	189	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACCCTGAGAGAGGAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	28525382	28531542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28530886_28531141_28531293_28531428
ONT_simulated_read_3876197	chr6	+	564	1	ISM	ENSMUSG00000068263.12	ENSMUST00000159570.9	2293	8	24	23995	0	-22321	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAAACAGTAGCCTACG	NA	NA	NA	NA	NA	NA	NA	NA	87707874	87708438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_87707900_87708400
ONT_simulated_read_3876396	chr10	+	1223	10	ISM	ENSMUSG00000034902.18	ENSMUST00000163075.8	4208	17	17725	1959	17683	-241	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTTTTTTTGGACGAAG	NA	NA	NA	NA	NA	NA	NA	NA	81146521	81153847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_81146719_81147476_81147561_81147807_81147857_81148335_81148421_81148741_81148904_81149196_81149336_81149453_81149487_81149828_81149928_81150825_81150953_81153599
ONT_simulated_read_3878443	chr2	-	859	3	ISM	ENSMUSG00000059742.11	ENST00000621889.1	1867	6	89349	201	89349	-201	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAAAGACTGTACTCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	62618350	62595072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_62595115_62607625_62608026_62617933
ONT_simulated_read_3880511	chrX	-	1624	4	ISM	ENSMUSG00000086503.5	ENSMUST00000127786.4	17946	7	13458	6555	13458	-6555	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTTCTCTGTTTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	102513402	102510526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_102511643_102512423_102512579_102512905_102513053_102513196
ONT_simulated_read_388161	chr3	-	237	2	ISM	ENSMUSG00000039058.12	ENSMUST00000045262.11	3323	14	195449	1120	34	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	974	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACTAAGTGGAAACAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	152178548	152169571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_152169654_152178393
ONT_simulated_read_3884138	chr4	-	339	4	ISM	ENSMUSG00000038172.15	ENSMUST00000048274.11	1804	16	76521	4248	31689	-4248	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCCCAAATGTACGCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	83165955	83162294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_83162353_83163266_83163376_83164509_83164576_83165849
ONT_simulated_read_3884202	chr2	-	968	5	ISM	ENSMUSG00000009614.17	ENSMUST00000102886.10	4521	21	36204	804	28652	-804	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGGAAGCTGTAAAGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	27101074	27079208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_27079657_27081890_27082027_27086660_27086830_27087540_27087704_27101022
ONT_simulated_read_3886757	chr9	-	1134	1	ISM	ENSMUSG00000031934.15	ENSMUST00000164273.9	5732	5	39304	2913	39304	-2913	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTGAGCCCCGGGCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	14917470	14916336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_14916300_14917500
ONT_simulated_read_388896	chr2	-	1364	8	ISM	ENSMUSG00000006469.14	ENSMUST00000006638.8	2183	13	2302	150	2153	3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGTACCATAGCCAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	25122074	25119059	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25119528_25120584_25120710_25120784_25120902_25120987_25121156_25121234_25121323_25121432_25121523_25121679_25121876_25121962
ONT_simulated_read_3890008	chr8	+	1533	10	ISM	ENSMUSG00000025809.16	ENSMUST00000090006.12	3815	16	0	13110	0	-13084	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATGGACGAAAGTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	129412134	129446571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_129412441_129431893_129431961_129433554_129433641_129436733_129436957_129439688_129439860_129440407_129440647_129442602_129442759_129443687_129443784_129444065_129444156_129446472
ONT_simulated_read_3890451	chr13	-	1737	5	ISM	ENSMUSG00000021556.13	ENSMUST00000095739.10	3689	11	30558	1274	30558	-1274	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGACTGACTGCAGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	59793036	59784083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906
ONT_simulated_read_3894942	chr5	-	2361	1	ISM	ENSMUSG00000029427.12	ENSMUST00000196282.5	4350	14	20015	431	19959	-423	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGCCAGGCAAGCACT	NA	NA	NA	NA	NA	NA	NA	NA	123839148	123836787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_123836800_123839100
ONT_simulated_read_3896499	chr16	-	4439	3	ISM	ENSMUSG00000022914.18	ENSMUST00000232755.2	9843	41	77358	621	77339	-621	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTATTACCAAGCATATTA	NA	NA	NA	NA	NA	NA	NA	NA	95806289	95801091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_95804555_95805059_95805909_95806162
ONT_simulated_read_389814	chr7	-	1737	8	ISM	ENSMUSG00000102252.6	ENSMUST00000059305.17	1932	10	9580	0	9580	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATTCTCAGAAGTCAATG	NA	NA	NA	NA	NA	NA	NA	NA	59645279	59632242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153
ONT_simulated_read_3898681	chr2	-	3408	19	ISM	ENSMUSG00000051747.16	ENST00000360870.10	17073	46	8294	33969	5929	-33969	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCATCTATACTGCATTT	NA	NA	NA	NA	NA	NA	NA	NA	76804597	76778304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_76778417_76778530_76778765_76779281_76779488_76780358_76780502_76781658_76781875_76781990_76782052_76782263_76782523_76783113_76783180_76783344_76783633_76784929_76785053_76785138_76785433_76794818_76794957_76795434_76795573_76796120_76796259_76797397_76797530_76798739_76798878_76799483_76799637_76799964_76800296_76804359
ONT_simulated_read_3899410	chr15	-	454	4	ISM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	8192	1634	8192	-1634	internal_fragment	FALSE	canonical	NA	NA	NA	NA	177	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCAGATGCCTTGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	31593758	31592579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_31592612_31592791_31592930_31593012_31593199_31593660
ONT_simulated_read_3903960	chr4	-	1491	1	ISM	ENSMUSG00000028238.7	ENSMUST00000029900.6	2539	8	44274	0	44274	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTAGAGTTGTTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	19878331	19876840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_19876800_19878300
ONT_simulated_read_3904891	chr2	-	551	1	ISM	ENSMUSG00000017412.16	ENSMUST00000178799.8	7981	14	241842	5870	121913	1	mono-exon	FALSE	NA	NA	NA	NA	NA	965	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTATCAAGGCACATATAAA	NA	NA	NA	NA	NA	NA	NA	NA	52324752	52324201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_52324200_52324800
ONT_simulated_read_3904908	chr12	-	789	1	ISM	ENSMUSG00000062929.9	ENST00000341223.8	2932	4	816	1638	816	31	mono-exon	FALSE	NA	NA	NA	NA	NA	432	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATATTTTGAATATCAG	NA	NA	NA	NA	NA	NA	NA	NA	54907999	54907210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_54907200_54908000
ONT_simulated_read_3906283	chr2	+	881	6	ISM	ENSMUSG00000015095.13	ENSMUST00000015239.10	2388	9	68	1921	68	-1921	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTCCTGCTGGATGCTAG	NA	NA	NA	NA	NA	NA	NA	NA	25390829	25393562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_25390899_25391947_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448
ONT_simulated_read_3906933	chr13	+	1385	16	FSM	ENSMUSG00000003992.16	ENST00000505980.5	1504	16	-1	120	0	-120	multi-exon	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGACTTTTATGCCATCC	NA	NA	NA	NA	NA	NA	NA	NA	91609299	91849167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91790420_91790511_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
ONT_simulated_read_3907606	chr6	-	1939	6	ISM	ENSMUSG00000040613.15	ENSMUST00000112585.8	2127	8	5599	0	3355	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATTGTTTTTGTGTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	122573731	122554759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045_122568164_122573590
ONT_simulated_read_3907659	chr7	-	743	1	ISM	ENSMUSG00000002968.10	ENSMUST00000208253.2	3693	18	14117	767	14090	-767	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTATGTTTGGTTCATTTC	NA	NA	NA	NA	NA	NA	NA	NA	44527698	44526955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44527000_44527700
ONT_simulated_read_3911643	chr3	-	454	5	ISM	ENSMUSG00000027855.14	ENST00000369518.1	2471	26	11208	94681	11208	-94681	internal_fragment	TRUE	canonical	NA	NA	NA	NA	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGACTGAACTTAAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	102830371	102822535	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316
ONT_simulated_read_3913490	chr8	+	2058	14	ISM	ENSMUSG00000031985.10	ENSMUST00000034466.10	2984	16	39	3150	39	-3150	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTTCGTGAGACTGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	125589810	125613646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_125590052_125597514_125597698_125600071_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591
ONT_simulated_read_3915147	chr9	-	1816	15	ISM	ENSMUSG00000032030.17	ENSMUST00000034529.14	3585	19	223	6765	219	-6765	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATGCTGGTGCTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	53578588	53535088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53578337
ONT_simulated_read_3916936	chr5	-	665	4	ISM	ENSMUSG00000029406.16	ENSMUST00000159677.8	1690	10	46101	3496	43536	-3496	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCAGCTCATGCTGTCCCG	NA	NA	NA	NA	NA	NA	NA	NA	124281709	124274363	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_124274465_124278586_124278815_124280131_124280254_124281495
ONT_simulated_read_3917206	chr4	-	1128	4	ISM	ENSMUSG00000028345.16	ENST00000535814.5	2848	14	70	31966	70	-31865	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATATGCCTTAAAAGAAATA	NA	NA	NA	NA	NA	NA	NA	NA	48469996	48462820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_48462882_48467663_48467905_48468280_48468994_48469883
ONT_simulated_read_3918855	chr15	-	494	1	ISM	ENSMUSG00000047921.18	ENSMUST00000023276.16	3301	22	465697	0	465697	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGTTGATTTCAGACT	NA	NA	NA	NA	NA	NA	NA	NA	72461962	72461468	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_72461500_72462000
ONT_simulated_read_3922876	chr10	-	1413	4	ISM	ENSMUSG00000040415.16	ENSMUST00000130855.8	1925	6	1913	264	670	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGGTCTCTGGAACTCCA	NA	NA	NA	NA	NA	NA	NA	NA	127029665	127026510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_127026909_127027204_127027423_127028477_127029208_127029598
ONT_simulated_read_3923557	chr4	-	1199	10	ISM	ENSMUSG00000042446.17	ENSMUST00000106108.9	7102	30	62719	28169	62719	-28169	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTGAATCATTACGCATT	NA	NA	NA	NA	NA	NA	NA	NA	126799209	126783900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126783969_126784807_126784862_126787087_126787260_126789072_126789189_126792088_126792234_126793724_126793763_126794397_126794542_126796335_126796487_126798189_126798363_126799071
ONT_simulated_read_3924799	chr2	-	837	2	ISM	ENSMUSG00000041219.15	ENST00000543522.5	2877	11	10409	830	10409	-504	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCGCTGGGGCAAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	113665261	113664109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_113664808_113665122
ONT_simulated_read_3925422	chr17	+	682	8	ISM	ENSMUSG00000032624.17	ENSMUST00000234584.2	2934	23	105086	426	105086	-350	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACCAACGTCAGTTTTAC	NA	NA	NA	NA	NA	NA	NA	NA	83763729	83785170	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
ONT_simulated_read_3925635	chr11	+	1337	8	ISM	ENSMUSG00000017499.16	ENSMUST00000092706.13	4614	12	48	8747	48	-6704	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTATAGCACTGTTGAC	NA	NA	NA	NA	NA	NA	NA	NA	98798674	98806015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804841_98805913
ONT_simulated_read_392716	chr13	-	516	1	ISM	ENSMUSG00000025869.12	ENSMUST00000026987.12	1756	5	5390	0	5296	0	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGATGCACTTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	54732513	54731997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_54732000_54732500
ONT_simulated_read_3928213	chr11	-	2164	3	ISM	ENSMUSG00000040548.17	ENSMUST00000103070.3	2645	5	10485	2647	10485	-2647	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTCAGGAAGCCGGCGG	NA	NA	NA	NA	NA	NA	NA	NA	106459454	106437530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106437830_106439539_106439741_106457790
ONT_simulated_read_3931948	chr1	-	916	4	ISM	ENSMUSG00000026211.19	ENSMUST00000113565.3	3379	9	4127	851	4127	-851	internal_fragment	FALSE	canonical	NA	NA	NA	NA	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTGAGGTGCGCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	75478878	75473830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_75473925_75474718_75474992_75476545_75476819_75478602
ONT_simulated_read_39321	chr4	-	584	1	ISM	ENSMUSG00000062627.10	ENSMUST00000075872.4	7420	20	31992	4485	31992	-4485	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGCCAACACAGCAAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	94835345	94834761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_94834800_94835300
ONT_simulated_read_3932642	chr4	-	238	2	ISM	ENSMUSG00000041530.18	ENSMUST00000239428.2	7065	19	25514	6926	25514	-6926	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCATCATCTTCTACCGCG	NA	NA	NA	NA	NA	NA	NA	NA	126336700	126335730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126335877_126336608
ONT_simulated_read_3935075	chr19	-	1690	1	ISM	ENSMUSG00000024846.7	ENSMUST00000025764.6	3951	3	1550	1630	1550	-1630	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCAGGGAGGGTAACCAGA	NA	NA	NA	NA	NA	NA	NA	NA	5398052	5396362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5396400_5398100
ONT_simulated_read_3939493	chr17	-	780	1	ISM	ENSMUSG00000024037.14	ENSMUST00000171171.9	4154	11	15841	1809	12967	681	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCATAGCTTTCTGGAAT	NA	NA	NA	NA	NA	NA	NA	NA	31715884	31715104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_31715100_31715900
ONT_simulated_read_3941699	chr11	-	1398	5	ISM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	23444	1559	23444	-1559	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGCAAAACGGAGCAATGA	NA	NA	NA	NA	NA	NA	NA	NA	76945817	76936676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_76937581_76939178_76939288_76940098_76940307_76941409_76941539_76945769
ONT_simulated_read_3941983	chr7	+	1888	4	ISM	ENSMUSG00000042178.7	ENSMUST00000044660.6	3834	6	634	2527	634	-2527	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCAGCGCTGCTGCGTGC	NA	NA	NA	NA	NA	NA	NA	NA	127837162	127841745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_127837762_127839053_127839162_127839254_127840042_127841351
ONT_simulated_read_3941993	chr10	+	1589	1	ISM	ENSMUSG00000025354.6	ENSMUST00000217745.2	4133	7	11779	338	11657	-338	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTAGCTTAGGCAGCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	128653201	128654790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_128653200_128654800
ONT_simulated_read_3943641	chr1	-	276	1	ISM	ENSMUSG00000026466.17	ENSMUST00000169241.8	3716	10	27117	2826	27117	-644	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGAAGTGCTCAAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	155883446	155883170	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_155883200_155883400
ONT_simulated_read_3945772	chr1	-	1772	11	ISM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	3385	0	3385	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTATACCTTTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	121492333	121481563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221
ONT_simulated_read_394685	chr5	-	946	7	ISM	ENSMUSG00000025533.16	ENST00000673518.1	1388	15	10602	-262	10602	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGGAGAGATGTGTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	130042327	130040098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241
ONT_simulated_read_394689	chr5	-	675	1	NIC	ENSMUSG00000001847.15	novel	4159	6	NA	NA	20887	-950	mono-exon	FALSE	NA	NA	NA	NA	NA	446	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTCTAAAAGACCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	143492861	143492186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_143492200_143492900
ONT_simulated_read_3947346	chr3	-	1487	10	ISM	ENSMUSG00000062232.15	ENSMUST00000118100.8	6573	24	32674	29402	32674	-29387	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAGGTCAACAAGAAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	79019610	78999224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_78999366_78999803_78999913_79000006_79000211_79000301_79000410_79001591_79001757_79002119_79002273_79005526_79005686_79006400_79006538_79011269_79011448_79019477
ONT_simulated_read_3950492	chrX	-	407	1	ISM	ENSMUSG00000063018.7	ENSMUST00000154346.2	874	2	8576	286	8576	3	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTTGTGGCTTATTAT	NA	NA	NA	NA	NA	NA	NA	NA	7278748	7278341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_7278300_7278700
ONT_simulated_read_3953652	chr11	+	1036	6	ISM	ENSMUSG00000017221.15	ENSMUST00000017365.15	2148	12	37	5032	37	-5032	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCCGGAGAACGATGAC	NA	NA	NA	NA	NA	NA	NA	NA	98573416	98581773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581480_98581741
ONT_simulated_read_3954151	chr18	-	1992	1	ISM	ENSMUSG00000024360.9	ENSMUST00000025218.8	3709	11	26946	285	26946	-285	mono-exon	FALSE	NA	NA	NA	NA	NA	521	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTTGTAGTTTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	35038114	35036122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_35036100_35038100
ONT_simulated_read_3955083	chrX	-	1300	1	ISM	ENSMUSG00000087174.8	ENSMUST00000127533.8	3164	6	30295	1305	30234	306	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTAGTCTAGCTTAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	104083407	104082107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_104082100_104083400
ONT_simulated_read_395525	chr6	-	781	6	ISM	ENSMUSG00000030138.9	ENST00000556075.2	1171	8	38	2390	38	-2390	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTATTCATGTTACAAATG	NA	NA	NA	NA	NA	NA	NA	NA	118373760	118368106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_118368242_118369278_118369338_118369504_118369686_118369763_118369953_118373087_118373268_118373723
ONT_simulated_read_3956355	chr14	-	368	1	NIC	ENSMUSG00000021982.15	novel	3189	11	NA	NA	33241	-252	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGATGACAATTAATAAACT	NA	NA	NA	NA	NA	NA	NA	NA	59802044	59801676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_59801700_59802000
ONT_simulated_read_3956965	chr2	-	296	2	ISM	ENSMUSG00000027131.4	ENSMUST00000028551.4	983	5	4075	209	3566	86	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGGTGAGGCCAGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	112194297	112193564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_112193700_112194136
ONT_simulated_read_3961151	chr15	+	869	2	FSM	ENSMUSG00000042622.15	ENST00000538999.1	905	2	36	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCGTTAGGGTTCTAAG	NA	NA	NA	NA	NA	NA	NA	NA	79231719	79242254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_79231955_79241620
ONT_simulated_read_3962435	chr12	-	1561	13	ISM	ENSMUSG00000015143.16	ENST00000682331.1	3558	20	63411	4260	63099	-3495	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAACCAGATCTTGACCC	NA	NA	NA	NA	NA	NA	NA	NA	80243766	80218590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_80218650_80219736_80219917_80220853_80220989_80222929_80223071_80223961_80224071_80225075_80225227_80228134_80228283_80230166_80230398_80231580_80231674_80239141_80239228_80240409_80240492_80243168_80243248_80243699
ONT_simulated_read_3962850	chr1	-	689	4	ISM	ENSMUSG00000026577.14	ENSMUST00000086032.4	1602	8	7773	114	7768	-114	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCATTGCTCTTTAGTG	NA	NA	NA	NA	NA	NA	NA	NA	164127285	164119812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113
ONT_simulated_read_3962890	chr17	-	486	4	ISM	ENSMUSG00000019579.14	ENSMUST00000019723.8	1710	6	4512	974	4512	-974	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTGAAGTCAAGATGTGG	NA	NA	NA	NA	NA	NA	NA	NA	56486408	56483717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56484004_56484698_56484772_56485263_56485346_56486363
ONT_simulated_read_3963487	chr11	+	1240	7	ISM	ENSMUSG00000034543.16	ENSMUST00000096441.5	5656	26	458	14567	155	-14460	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGTCTACAAATACTCTC	NA	NA	NA	NA	NA	NA	NA	NA	3599648	3625910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_3600448_3608671_3608726_3611828_3611864_3618770_3618840_3619328_3619420_3622265_3622375_3625827
ONT_simulated_read_3965947	chr9	+	1199	8	ISM	ENSMUSG00000015354.9	ENSMUST00000015498.9	4438	9	0	3413	0	-412	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATCATCAGCATCTACAGG	NA	NA	NA	NA	NA	NA	NA	NA	95519653	95576736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_95519927_95520704_95520814_95552057_95552314_95560397_95560523_95563585_95563723_95568738_95568894_95574913_95574998_95576676
ONT_simulated_read_3966843	chr2	-	313	1	FSM	ENSMUSG00000082044.2	ENSMUST00000121967.2	279	1	0	-34	0	34	mono-exon	FALSE	NA	NA	NA	NA	NA	197	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCTTGAGCGTGTTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	131164286	131163973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_131164000_131164300
ONT_simulated_read_3967565	chr4	+	372	1	NIC	ENSMUSG00000029076.15	novel	1670	8	NA	NA	0	-9417	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTGCGTAAGACTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	156077367	156077739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_+_156077400_156077700
ONT_simulated_read_3968400	chr5	+	800	4	ISM	ENSMUSG00000041264.17	ENSMUST00000050472.16	3757	9	0	21340	0	-21162	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCAGCACAGCTGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	149121369	149130904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649
ONT_simulated_read_3969096	chr8	-	2103	4	ISM	ENSMUSG00000038697.16	ENSMUST00000093039.6	2912	5	11175	661	11175	-661	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTTTTCCATGATGATAA	NA	NA	NA	NA	NA	NA	NA	NA	124736572	124723717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427
ONT_simulated_read_3969481	chr1	+	2013	13	ISM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	0	11694	0	-10096	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCTACCCTCTGGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	180396493	180417125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962
ONT_simulated_read_3971141	chr19	+	1176	6	ISM	ENSMUSG00000024650.6	ENST00000360421.9	1956	10	13	4204	0	-4204	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGAAGGAACTGACTCTA	NA	NA	NA	NA	NA	NA	NA	NA	8595402	8599421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_8596011_8596366_8596471_8596678_8596834_8598554_8598724_8599149_8599274_8599405
ONT_simulated_read_3972778	chr10	+	1125	9	ISM	ENSMUSG00000020156.17	ENSMUST00000020365.15	2640	14	7761	188	7505	-188	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAACTTTGACCTGTGCGT	NA	NA	NA	NA	NA	NA	NA	NA	80070028	80079549	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
ONT_simulated_read_397373	chr19	-	904	4	ISM	ENSMUSG00000075289.6	ENSMUST00000167055.2	3968	10	2258	6784	2258	-6784	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAGCCATCCACAGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	4223220	4221106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4221170_4221410_4221899_4222144_4222235_4222957
ONT_simulated_read_3974706	chr18	-	1556	1	FSM	ENSMUSG00000117634.2	ENSMUST00000235010.2	2365	1	309	500	309	-500	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACTAAAATTTGCATAATA	NA	NA	NA	NA	NA	NA	NA	NA	11790532	11788976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_11789000_11790500
ONT_simulated_read_3975525	chr19	-	418	4	ISM	ENSMUSG00000024889.6	ENSMUST00000237059.2	1227	6	606	552	553	-171	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCAGGCTATGCCCTCGG	NA	NA	NA	NA	NA	NA	NA	NA	4674792	4673172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4673271_4673853_4673926_4674041_4674210_4674712
ONT_simulated_read_3975627	chr3	-	183	1	ISM	ENSMUSG00000027805.17	ENSMUST00000066882.10	2342	3	4789	1213	2079	0	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCCCCTTCCCCTTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	57750711	57750528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_57750500_57750700
ONT_simulated_read_397710	chr2	-	741	4	ISM	ENSMUSG00000036890.14	ENST00000241391.9	2244	8	233597	609	164483	-609	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	177	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACTGCAGCTTCAAACAC	NA	NA	NA	NA	NA	NA	NA	NA	44481966	44455042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_44455547_44460430_44460523_44461224_44461296_44481892
ONT_simulated_read_3978776	chr1	-	1643	11	ISM	ENSMUSG00000056220.15	ENSMUST00000111926.9	2835	17	36150	11039	36150	-11039	internal_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGCATTCAAAAGGCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	149762040	149716425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_149716527_149717914_149718111_149727017_149727203_149733195_149733436_149736805_149736878_149740661_149740755_149740866_149741005_149747151_149747267_149748288_149748512_149755740_149755878_149761897
ONT_simulated_read_3980494	chr9	-	384	1	FSM	ENSMUSG00000090317.2	ENSMUST00000165499.2	922	1	542	-4	542	4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTTTGACATTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	78355526	78355142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_78355100_78355500
ONT_simulated_read_3982208	chr2	+	347	2	ISM	ENSMUSG00000027498.15	ENSMUST00000116375.2	3451	6	0	9467	0	-9467	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGGACCGGCAGCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	172212653	172214901	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_172212948_172214848
ONT_simulated_read_3983900	chr11	+	2875	1	FSM	ENSMUSG00000098906.3	ENSMUST00000185156.3	56	1	0	-2819	0	2819	mono-exon	FALSE	NA	NA	NA	NA	NA	1515	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTGGGTTTTGTCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	55392051	55394926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_55392100_55394900
ONT_simulated_read_3988272	chr5	-	264	2	ISM	ENSMUSG00000029475.18	ENST00000543852.5	1020	5	4028	3951	4028	-3951	internal_fragment	FALSE	canonical	NA	NA	NA	NA	164	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGAGGCACCTTCTTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	123085936	123079014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_123079132_123085789
ONT_simulated_read_3988515	chr7	+	176	1	ISM	ENSMUSG00000040268.18	ENSMUST00000120441.8	3777	13	51	47330	51	-43839	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAAGTGGGGCATGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	130467536	130467712	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_130467500_130467700
ONT_simulated_read_3988808	chr5	-	474	5	ISM	ENSMUSG00000029015.10	ENST00000432958.6	2355	17	31627	335	31627	-335	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	486	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAAAATCCTGCCTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	22020740	22016304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_22016340_22018322_22018378_22018851_22019053_22019894_22020003_22020665
ONT_simulated_read_3989289	chr15	-	194	1	Antisense	novelGene_ENSMUSG00000055024.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAATTGCTAGAGAAGACA	NA	NA	NA	NA	NA	NA	NA	NA	81497572	81497378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr15_-_81497400_81497600
ONT_simulated_read_3989713	chr3	-	3204	5	ISM	ENSMUSG00000005034.16	ENSMUST00000106137.8	4061	10	22222	148	22222	-146	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTCTGTTCCATTCCT	NA	NA	NA	NA	NA	NA	NA	NA	146453794	146435767	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_146438469_146443688_146443854_146451014_146451138_146452354_146452451_146453675
ONT_simulated_read_3991226	chr17	+	955	5	ISM	ENSMUSG00000090115.8	ENSMUST00000024779.15	8252	7	42611	5740	23352	107	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	162	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTCACTTTCTTGTGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	47984225	47991923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_47984344_47985640_47985846_47989768_47989878_47990588_47990795_47991606
ONT_simulated_read_3991954	chr16	+	226	1	FSM	ENSMUSG00000081824.6	ENSMUST00000121906.2	319	1	0	93	0	-93	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCATGATATCAAGAAACAG	NA	NA	NA	NA	NA	NA	NA	NA	42775993	42776219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_42776000_42776200
ONT_simulated_read_3992892	chr2	-	699	7	ISM	ENSMUSG00000027206.14	ENSMUST00000028635.6	2073	13	9285	7846	9169	-7663	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAGGCACACACTGATT	NA	NA	NA	NA	NA	NA	NA	NA	125691774	125681367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659
ONT_simulated_read_3994148	chr4	-	994	1	ISM	ENSMUSG00000043257.16	ENSMUST00000062118.11	3979	4	9873	1394	9635	473	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCCAGTGCTCTTAACC	NA	NA	NA	NA	NA	NA	NA	NA	133390085	133389091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_133389100_133390100
ONT_simulated_read_3996503	chr6	-	160	1	ISM	ENSMUSG00000029814.11	ENSMUST00000031838.9	4345	15	127519	2056	21592	66	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACGGGTGCTGACCCATCC	NA	NA	NA	NA	NA	NA	NA	NA	49064372	49064212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_49064200_49064400
ONT_simulated_read_3996984	chr7	-	1671	8	ISM	ENSMUSG00000038520.16	ENSMUST00000047085.16	8750	17	5549	5842	5360	4630	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCCTGTTCATCTGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	44492950	44489888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44490845_44490966_44491054_44491406_44491524_44491626_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855
ONT_simulated_read_3997113	chr11	-	2464	13	ISM	ENSMUSG00000020538.16	ENSMUST00000020846.8	4299	19	13350	2712	13350	-2712	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGTGAGCTCCAGACCC	NA	NA	NA	NA	NA	NA	NA	NA	60098080	60092626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663
ONT_simulated_read_3997988	chr19	-	1273	11	NIC	ENSMUSG00000025085.17	novel	5907	21	NA	NA	57531	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGGGGCTTCTTTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	57049814	57025397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_57025770_57027838_57027920_57028918_57028994_57030346_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57035356_57035498_57037893_57037942_57039561_57039667_57049684
ONT_simulated_read_400224	chr8	-	1459	1	ISM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	15937	316	15937	-316	mono-exon	FALSE	NA	NA	NA	NA	NA	1915	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGGACAAAAATGGAAATT	NA	NA	NA	NA	NA	NA	NA	NA	86266036	86264577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_86264600_86266000
ONT_simulated_read_4004756	chrX	-	617	1	ISM	ENSMUSG00000037010.8	ENSMUST00000039026.8	3149	3	7189	1902	7189	-1902	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCAGTCCCCAGGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	47116541	47115924	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_47115900_47116500
ONT_simulated_read_40057	chr1	-	1744	9	ISM	ENSMUSG00000026670.16	ENSMUST00000111351.10	2287	11	13398	0	13398	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTTGTTTCTACCTTAA	NA	NA	NA	NA	NA	NA	NA	NA	169989117	169969570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_169970142_169970965_169971033_169975564_169975616_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935
ONT_simulated_read_400945	chr17	-	989	5	ISM	ENSMUSG00000024002.19	ENSMUST00000003726.16	5957	20	70376	5939	70376	2697	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCCATCTCAACCAGCAT	NA	NA	NA	NA	NA	NA	NA	NA	32432695	32421186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500
ONT_simulated_read_4014032	chr2	-	782	5	ISM	ENSMUSG00000015087.15	ENSMUST00000058137.9	3230	15	22698	846	22698	-846	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGAAGCCTTCCTGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	25475835	25473875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25474001_25474114_25474174_25474787_25474957_25475319_25475549_25475635
ONT_simulated_read_4015171	chr6	-	260	1	ISM	ENSMUSG00000030008.10	ENSMUST00000032080.9	1038	5	3989	225	3954	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGGCCTCAAGGACATCT	NA	NA	NA	NA	NA	NA	NA	NA	85424276	85424016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_85424000_85424300
ONT_simulated_read_4016284	chr5	+	820	6	ISM	ENSMUSG00000029101.17	ENSMUST00000114284.8	3624	15	165	10780	0	-9773	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGAGGTGGAGGGACGTA	NA	NA	NA	NA	NA	NA	NA	NA	35146892	35180006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_35147213_35156551_35156574_35176686_35176857_35177657_35177751_35178459_35178604_35179935
ONT_simulated_read_4016700	chr3	-	848	5	ISM	ENSMUSG00000028114.17	ENSMUST00000029759.16	2741	11	11222	1109	11045	-1109	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGCTTTACTCCTCGGTAG	NA	NA	NA	NA	NA	NA	NA	NA	123168535	123163054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_123163340_123164923_123165135_123166205_123166323_123167618_123167712_123168393
ONT_simulated_read_4017508	chr15	-	1081	8	ISM	ENSMUSG00000037343.9	ENSMUST00000041733.9	5031	26	26164	13355	26164	-13355	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGACCGTCTTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	54909384	54891881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_54891944_54894441_54894552_54897558_54897629_54899913_54900054_54901634_54901829_54903758_54903870_54906504_54906646_54909131
ONT_simulated_read_4019011	chr2	-	1829	12	ISM	ENSMUSG00000027010.17	ENSMUST00000151937.8	6351	18	55186	3685	55186	-3685	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATTCATTCTCCTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	71142907	71105091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768
ONT_simulated_read_4021523	chr1	-	1681	10	ISM	ENSMUSG00000094410.9	ENSMUST00000179598.4	10156	17	22075	3117	22075	-3117	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCATCGCAGCCGTGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	133566981	133550794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777
ONT_simulated_read_4021574	chr1	-	451	5	FSM	ENSMUSG00000054387.14	ENST00000507825.3	445	5	-4	-2	-4	2	multi-exon	FALSE	canonical	NA	NA	NA	NA	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGGATCAAGACTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	132946596	132931524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_132931629_132936874_132936931_132938802_132938937_132940374_132940450_132946514
ONT_simulated_read_4024130	chr2	-	665	7	ISM	ENSMUSG00000017670.17	ENST00000352077.6	2157	20	639	11598	639	-10842	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTCCATAATCCTGAACGT	NA	NA	NA	NA	NA	NA	NA	NA	165157597	165143878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_165143912_165146819_165146899_165150832_165150985_165152094_165152189_165153542_165153725_165156650_165156702_165157523
ONT_simulated_read_402615	chr9	-	868	4	ISM	ENSMUSG00000032067.7	ENSMUST00000034570.7	1046	6	3370	0	3318	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	NA	NA	NA	NA	NA	NA	NA	NA	50436581	50432916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561
ONT_simulated_read_4026187	chr4	+	269	3	ISM	ENSMUSG00000065990.13	ENSMUST00000084097.12	1159	4	318	665	0	-566	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTCAGAGCTTGAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	155916125	155916922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155916193_155916439_155916528_155916808
ONT_simulated_read_4031961	chr2	+	197	2	FSM	ENSMUSG00000027245.12	ENST00000458412.2	440	2	28	215	28	-215	multi-exon	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGAGTTGATAGTGAGTA	NA	NA	NA	NA	NA	NA	NA	NA	121287614	121288511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_121287773_121288472
ONT_simulated_read_4033543	chr4	-	1035	5	ISM	ENSMUSG00000028809.17	ENSMUST00000105861.8	3797	17	23803	1917	23618	-368	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGGCTGTGACCATAGC	NA	NA	NA	NA	NA	NA	NA	NA	135056829	135049711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056683
ONT_simulated_read_403608	chr5	-	382	2	ISM	ENSMUSG00000029507.17	ENSMUST00000112426.8	1389	4	4333	1264	4333	-1263	internal_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGAGTTTGCTGTGATCA	NA	NA	NA	NA	NA	NA	NA	NA	110923500	110922796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_110923080_110923401
ONT_simulated_read_4037381	chr19	-	211	2	ISM	ENSMUSG00000024963.13	ENSMUST00000179118.2	840	6	2718	286	2718	-286	internal_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCCAGGTCTGTCACTGC	NA	NA	NA	NA	NA	NA	NA	NA	6966922	6965564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6965644_6966790
ONT_simulated_read_4038089	chr4	-	752	3	ISM	ENSMUSG00000028329.14	ENSMUST00000058232.11	1241	6	11870	0	11870	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAGTAACAAGAGTATGT	NA	NA	NA	NA	NA	NA	NA	NA	46184441	46155346	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_46155827_46183117_46183236_46184287
ONT_simulated_read_4038562	chr9	+	729	5	ISM	ENSMUSG00000032178.15	ENST00000588657.5	2707	18	8946	5102	8946	-2064	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCGCCACCTCCTAACATC	NA	NA	NA	NA	NA	NA	NA	NA	21308764	21311026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_21308965_21309264_21309433_21310408_21310547_21310711_21310889_21310980
ONT_simulated_read_4039783	chr11	-	913	8	ISM	ENSMUSG00000014195.17	ENSMUST00000146840.3	1828	14	21817	202	7772	4	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGTGGACAGTTCACTT	NA	NA	NA	NA	NA	NA	NA	NA	100482366	100473872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237
ONT_simulated_read_4040568	chr11	-	849	1	NIC	ENSMUSG00000004040.17	novel	6042	24	NA	NA	50619	323	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACCCTGTTTCAGGGTCA	NA	NA	NA	NA	NA	NA	NA	NA	100779587	100778738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_100778700_100779600
ONT_simulated_read_404087	chr7	-	643	7	ISM	ENSMUSG00000030619.11	ENST00000528180.5	1733	10	8701	791	8317	-618	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAGAAGATCCTCATAAAG	NA	NA	NA	NA	NA	NA	NA	NA	89621506	89604762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_89604813_89605462_89605622_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438
ONT_simulated_read_4043022	chr6	-	5645	19	ISM	ENSMUSG00000045095.17	ENST00000621418.4	6147	22	157695	37	127927	-37	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACTATTGGAGTTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	93762608	93653172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_93655984_93659932_93660072_93662534_93662679_93663557_93663619_93663762_93663857_93670988_93671190_93674174_93674469_93676596_93676790_93678270_93678363_93684984_93685202_93694220_93694253_93722414_93723036_93724172_93724356_93731994_93732088_93734635_93734746_93737688_93737747_93746488_93746525_93750587_93750671_93762425
ONT_simulated_read_4045622	chr4	-	518	1	ISM	ENSMUSG00000028445.8	ENSMUST00000127306.2	1269	2	1349	314	1349	-314	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGCCCTAGAGAGAAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	41638975	41638457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_41638500_41639000
ONT_simulated_read_4048416	chr16	+	222	1	ISM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	71	65601	0	-64592	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAATCTGAAGCCCCCGT	NA	NA	NA	NA	NA	NA	NA	NA	49519666	49519888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_49519700_49519900
ONT_simulated_read_4054847	chr10	-	750	6	ISM	ENSMUSG00000043822.19	ENSMUST00000095446.10	1957	13	5421	471	5421	-471	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCCCACACCGAGAATACC	NA	NA	NA	NA	NA	NA	NA	NA	80178825	80177145	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80177291_80177422_80177495_80177576_80177776_80177892_80178057_80178140_80178228_80178742
ONT_simulated_read_4058160	chr17	-	679	1	ISM	ENSMUSG00000024097.12	ENST00000446327.6	2386	7	5874	807	5292	423	mono-exon	FALSE	NA	NA	NA	NA	NA	376	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGGTTAATTCTGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	80508994	80508315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_80508300_80509000
ONT_simulated_read_4058661	chr13	-	195	1	ISM	ENSMUSG00000021713.10	ENSMUST00000022226.6	2342	11	23193	311	23193	-73	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCTGAATATGTAAATCAT	NA	NA	NA	NA	NA	NA	NA	NA	104342137	104341942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_104341900_104342100
ONT_simulated_read_4062525	chr2	-	800	6	ISM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	16106	126	16106	-126	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	155	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATGGTTTTTAGAACTAT	NA	NA	NA	NA	NA	NA	NA	NA	3497745	3490012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600
ONT_simulated_read_406281	chr2	+	907	9	ISM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	2402	0	2341	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	297	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	NA	NA	NA	NA	NA	NA	NA	155852366	155860199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
ONT_simulated_read_4065573	chr7	-	403	1	Antisense	novelGene_ENSMUSG00000052512.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAGAGAAACCAGCAAGG	NA	NA	NA	NA	NA	NA	NA	NA	49197988	49197585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr7_-_49197600_49198000
ONT_simulated_read_4065601	chr11	-	660	5	ISM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	3797	446	3797	-446	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	627	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGACATCTTGTTTTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	69559346	69558207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230
ONT_simulated_read_4065906	chr17	-	1806	1	ISM	ENSMUSG00000039316.15	ENSMUST00000044503.14	4029	10	196242	370	99900	-370	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCCCACACACCCTGATG	NA	NA	NA	NA	NA	NA	NA	NA	50301460	50299654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_50299700_50301500
ONT_simulated_read_4066453	chr14	+	1245	12	ISM	ENSMUSG00000036023.7	ENSMUST00000036126.7	1894	16	7029	239	7029	-239	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGTGACACAGGAATTCT	NA	NA	NA	NA	NA	NA	NA	NA	51052326	51058519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ONT_simulated_read_4067502	chr9	+	1620	13	ISM	ENSMUSG00000032050.19	ENSMUST00000000590.16	4380	14	156	3573	0	-1191	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCTGCGCCACCTCCACC	NA	NA	NA	NA	NA	NA	NA	NA	51959570	51996456	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_51959733_51972131_51972204_51974877_51974962_51976159_51976256_51976944_51977220_51978660_51978745_51979429_51979577_51980106_51980204_51980914_51981079_51984453_51984585_51992318_51992480_51993742_51993836_51996402
ONT_simulated_read_4067632	chr15	-	507	5	ISM	ENSMUSG00000036698.12	ENST00000519980.5	3014	18	56387	17811	56387	-17811	internal_fragment	TRUE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTATAAAAAAATTAACAGA	NA	NA	NA	NA	NA	NA	NA	NA	73000281	72996071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_72996099_72997012_72997161_72998295_72998384_72998802_72998938_73000172
ONT_simulated_read_4067817	chr4	-	690	6	ISM	ENSMUSG00000040044.12	ENSMUST00000108142.8	2266	20	15123	16241	15123	-16241	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGATCTCTCAGAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	34599790	34587036	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703
ONT_simulated_read_4068660	chr4	-	1568	4	ISM	ENSMUSG00000049878.14	ENSMUST00000168615.8	6585	6	17733	4545	17733	-4035	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGGTCCTCAGCCTTAC	NA	NA	NA	NA	NA	NA	NA	NA	121027998	121007114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_121008220_121012052_121012195_121016388_121016526_121027814
ONT_simulated_read_4073318	chr4	-	771	3	ISM	ENSMUSG00000019055.16	ENSMUST00000019199.14	3243	19	20858	590	20816	-590	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTCTGGGTCAACCCACC	NA	NA	NA	NA	NA	NA	NA	NA	148000366	147994799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_147995332_147997676_147997803_148000253
ONT_simulated_read_4075046	chr9	-	424	5	ISM	ENSMUSG00000003131.8	ENSMUST00000214179.2	794	6	6688	254	23	-254	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCTTTAAGACAAAAGAATG	NA	NA	NA	NA	NA	NA	NA	NA	45890004	45880235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939
ONT_simulated_read_407518	chr2	+	1367	11	ISM	ENSMUSG00000002102.16	ENSMUST00000067663.14	1636	12	91	304	0	-304	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGTCAGCGTGGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	90884444	90889473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390
ONT_simulated_read_4077630	chr3	+	625	5	ISM	ENSMUSG00000027680.16	ENST00000491062.5	1767	14	37968	155	37958	-155	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAGCAGTCCTGAATGG	NA	NA	NA	NA	NA	NA	NA	NA	34112214	34123206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
ONT_simulated_read_4077777	chr2	-	215	1	NIC	ENSMUSG00000036093.8	novel	5239	6	NA	NA	22460	1	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTTTGCGCTCTCATTCC	NA	NA	NA	NA	NA	NA	NA	NA	52292445	52292230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_52292200_52292400
ONT_simulated_read_4078893	chr2	-	1162	11	NIC	ENSMUSG00000056486.19	novel	4050	13	NA	NA	9	-229	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAACCCTCATGAGATCC	NA	NA	NA	NA	NA	NA	NA	NA	73551777	73443481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_73443541_73445005_73445112_73448264_73448403_73454458_73454537_73455220_73455395_73462089_73462175_73509958_73510248_73537262_73537377_73540798_73540831_73546707_73546764_73551746
ONT_simulated_read_4079212	chrX	-	573	5	ISM	ENSMUSG00000067567.13	ENST00000373583.6	1676	10	6910	118000	6821	12045	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGACCGGGGTCATCCT	NA	NA	NA	NA	NA	NA	NA	NA	101541876	101446247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_101446286_101449142_101449316_101471720_101471830_101476090_101476204_101541736
ONT_simulated_read_4081038	chrX	-	2029	1	ISM	ENSMUSG00000035776.15	ENSMUST00000080035.11	3327	9	69920	637	69901	-637	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTTAAACTGTTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	70466331	70464302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_70464300_70466300
ONT_simulated_read_4082239	chr5	-	646	7	FSM	ENSMUSG00000029397.16	ENST00000507014.1	650	7	4	0	4	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCTGTCCTTGGCTAGA	NA	NA	NA	NA	NA	NA	NA	NA	92110585	92097594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_92097724_92099679_92099801_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92110488
ONT_simulated_read_408246	chr8	-	275	1	NIC	ENSMUSG00000006567.12	novel	6505	21	NA	NA	33811	0	mono-exon	FALSE	NA	NA	NA	NA	NA	302	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTCTCCTGGGCAGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	22484941	22484666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_22484700_22484900
ONT_simulated_read_4084769	chr19	+	1187	5	ISM	ENSMUSG00000024949.18	ENST00000377387.5	2813	13	9604	368	9604	323	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	330	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACAGGGCACAGCCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	6423650	6426865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
ONT_simulated_read_4086140	chr19	-	631	2	ISM	ENSMUSG00000024736.16	ENSMUST00000025645.14	3657	11	10188	888	10026	-876	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGCCAAAGAAGAGGAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	10837116	10836073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_10836516_10836927
ONT_simulated_read_4088778	chrX	-	2170	9	ISM	ENSMUSG00000031171.12	ENSMUST00000033513.10	3425	13	3380	670	33	-670	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACAAGTCCTTGAATTG	NA	NA	NA	NA	NA	NA	NA	NA	8115265	8105576	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111895_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217
ONT_simulated_read_408953	chr18	-	415	4	ISM	ENSMUSG00000024502.11	ENST00000507386.5	4553	20	19632	35913	19632	-34250	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGGCATCATCGATGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	43704260	43698960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_43699057_43700155_43700276_43701132_43701190_43704118
ONT_simulated_read_4093825	chr4	+	456	4	FSM	ENSMUSG00000042202.16	ENST00000643943.1	655	4	128	71	128	-71	multi-exon	FALSE	canonical	NA	NA	NA	NA	420	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGCCTTGTTTCACCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	155694659	155702146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_155694777_155694957_155695094_155696072_155696201_155702071
ONT_simulated_read_4094095	chr18	-	677	1	ISM	ENSMUSG00000024269.12	ENSMUST00000115817.3	4159	7	29873	2421	29560	-2421	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTGCATGTGAACACGT	NA	NA	NA	NA	NA	NA	NA	NA	25272191	25271514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_25271500_25272200
ONT_simulated_read_4097005	chr3	-	525	6	ISM	ENSMUSG00000028041.18	ENST00000531455.5	2529	21	6729	27	6729	-27	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACCTCTGGAGATTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	89250498	89247221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_89247261_89247361_89247487_89248814_89248885_89249243_89249383_89249595_89249669_89250419
ONT_simulated_read_4097043	chr4	+	739	5	ISM	ENSMUSG00000078773.12	ENSMUST00000070755.13	2870	15	50403	249	50403	-249	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGACCATTTAAATCTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	11609374	11615556	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_11609470_11610303_11610566_11612371_11612439_11612617_11612819_11615442
ONT_simulated_read_4103231	chrX	+	439	4	ISM	ENSMUSG00000002014.13	ENST00000370085.3	505	5	1616	-22	1616	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	72832449	72834432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_72832560_72833636_72833727_72833964_72834031_72834259
ONT_simulated_read_4103588	chr12	-	783	1	ISM	ENSMUSG00000059436.14	ENSMUST00000110395.11	1942	5	23476	658	23316	264	mono-exon	FALSE	NA	NA	NA	NA	NA	290	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGGACGCTGGTATGTAT	NA	NA	NA	NA	NA	NA	NA	NA	76985483	76984700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_76984700_76985500
ONT_simulated_read_410382	chr2	-	234	3	ISM	ENSMUSG00000051730.16	ENST00000410097.5	670	7	6173	409	6173	-409	internal_fragment	FALSE	canonical	NA	NA	NA	NA	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATGGTCATTTCCACTCT	NA	NA	NA	NA	NA	NA	NA	NA	69709528	69702026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_69702126_69704227_69704280_69709445
ONT_simulated_read_4109364	chr6	+	512	7	ISM	ENSMUSG00000030269.15	ENST00000420925.5	1410	9	28164	515	10158	-515	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCGAGCAGCAACCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	113242965	113257644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113257563
ONT_simulated_read_4110787	chr18	-	728	4	ISM	ENSMUSG00000024269.12	ENSMUST00000115817.3	4159	7	0	13127	0	-13127	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCCTAATGCACCAACTC	NA	NA	NA	NA	NA	NA	NA	NA	25302064	25282220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_25282300_25284256_25284345_25291300_25291381_25301583
ONT_simulated_read_4110937	chr13	-	618	1	FSM	ENSMUSG00000051627.4	ENSMUST00000062045.4	1930	1	0	1312	0	-1312	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCCCTGCCAAGGCGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	23806541	23805923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_23805900_23806500
ONT_simulated_read_411215	chr19	+	785	3	ISM	ENSMUSG00000024772.10	ENSMUST00000025684.4	3353	5	17456	1849	17456	-1849	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	138	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGGCCCTTTGGGCATGG	NA	NA	NA	NA	NA	NA	NA	NA	6344210	6348277	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_6344657_6347562_6347728_6348103
ONT_simulated_read_4113891	chr5	-	867	5	ISM	ENSMUSG00000023348.12	ENSMUST00000024119.11	2168	9	950	1063	736	-1063	internal_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGGCATCCCGTTCACA	NA	NA	NA	NA	NA	NA	NA	NA	137311716	137308978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137309094_137310135_137310306_137310401_137310496_137310967_137311352_137311612
ONT_simulated_read_411755	chr10	-	1669	8	ISM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	2675	0	2675	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCTGCTTCTGTTTGATC	NA	NA	NA	NA	NA	NA	NA	NA	127355580	127352991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498
ONT_simulated_read_4119872	chr11	-	617	1	ISM	ENSMUSG00000018761.15	ENSMUST00000018905.12	1321	7	5329	0	5329	0	mono-exon	FALSE	NA	NA	NA	NA	NA	208	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	NA	NA	NA	NA	NA	NA	NA	NA	69548139	69547522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69547500_69548100
ONT_simulated_read_4120033	chr18	-	424	2	ISM	ENSMUSG00000003778.15	ENSMUST00000097626.10	3005	21	22358	0	22358	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGTGTGTATATATAACA	NA	NA	NA	NA	NA	NA	NA	NA	34735296	34732911	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_34733295_34735255
ONT_simulated_read_4122376	chr12	-	357	4	ISM	ENSMUSG00000021252.12	ENSMUST00000021676.12	1169	5	2324	710	2324	-710	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTAGAGGCAGAACCAGTA	NA	NA	NA	NA	NA	NA	NA	NA	85868972	85862931	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_85862968_85863089_85863209_85866252_85866344_85868861
ONT_simulated_read_412331	chr14	+	894	7	ISM	ENSMUSG00000021996.17	ENSMUST00000177137.8	853	8	2476	-123	2476	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	NA	NA	NA	NA	NA	NA	NA	74975882	74987288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983162_74987084
ONT_simulated_read_4123699	chr16	-	900	3	ISM	ENSMUSG00000022639.15	ENSMUST00000186944.7	2052	4	4581	779	4491	-774	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGCCATATACAGTCATT	NA	NA	NA	NA	NA	NA	NA	NA	50548555	50540435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_50540910_50547236_50547362_50548254
ONT_simulated_read_412523	chr7	-	828	3	ISM	ENSMUSG00000030888.15	ENSMUST00000098148.6	2216	7	2345	1471	1741	-1471	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGCTGTGGAGATTGC	NA	NA	NA	NA	NA	NA	NA	NA	105384247	105383081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105383105_105383206_105383661_105383896
ONT_simulated_read_4126335	chr6	-	684	6	NNC	ENSMUSG00000030056.9	novel	5837	11	NA	NA	8054	15	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	592	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGAACTCTGGAAGACCT	NA	NA	NA	NA	NA	NA	NA	NA	87804679	87796061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802467_87804565
ONT_simulated_read_4130503	chr7	+	767	5	ISM	ENSMUSG00000066979.7	ENSMUST00000084502.7	2218	8	0	5583	0	-2412	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTACCAGACTCGCTGCAT	NA	NA	NA	NA	NA	NA	NA	NA	131161950	131168038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165215_131167921
ONT_simulated_read_4131489	chr3	+	852	4	ISM	ENSMUSG00000027710.15	ENSMUST00000011492.15	3930	18	22880	1407	19151	512	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAACTTCAAATTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	36143007	36145595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_36143042_36143480_36143610_36144230_36144304_36144979
ONT_simulated_read_4131548	chr16	-	363	1	ISM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	13141	0	12927	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAGTAGGCATTAATG	NA	NA	NA	NA	NA	NA	NA	NA	15442123	15441760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_15441800_15442100
ONT_simulated_read_4131555	chr1	-	1691	5	ISM	ENSMUSG00000026576.13	ENSMUST00000027863.13	2580	6	4738	294	4738	-294	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACCATTTTCATGGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	164281186	164264971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_164266109_164266867_164266952_164269025_164269211_164270763_164270920_164281057
ONT_simulated_read_413288	chr12	-	2986	6	ISM	ENSMUSG00000021224.16	ENSMUST00000021647.14	1815	9	30983	-1405	30983	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTATAGTTCTGTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	83858134	83840807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_83842929_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059
ONT_simulated_read_4139841	chr13	-	2043	7	ISM	ENSMUSG00000034928.17	ENST00000274811.9	4111	11	4569	1126	4569	1027	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCAGGGGGCCCCTCCCG	NA	NA	NA	NA	NA	NA	NA	NA	54831030	54828350	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855
ONT_simulated_read_4140092	chr10	+	521	4	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	3404	1584	3404	-1584	internal_fragment	FALSE	canonical	NA	NA	NA	NA	560	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCTGATGGCCTGGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	81015868	81016748	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_81015912_81015986_81016246_81016398_81016507_81016637
ONT_simulated_read_4140487	chr7	+	1065	1	ISM	ENSMUSG00000089847.9	ENSMUST00000106783.8	3273	3	2409	108	1875	-103	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTTCCCAAAACCAGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	105291671	105292736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105291700_105292700
ONT_simulated_read_4141352	chr9	-	248	3	ISM	ENSMUSG00000070319.7	ENSMUST00000004206.10	1101	11	3465	350	3465	-350	internal_fragment	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTGCCATTGCAGGGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	20806454	20805994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_20806036_20806128_20806266_20806384
ONT_simulated_read_4141859	chr7	-	208	1	ISM	ENSMUSG00000030872.15	ENSMUST00000033160.15	4915	17	31459	2834	31459	-2834	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTATGTGTGGGTGCGT	NA	NA	NA	NA	NA	NA	NA	NA	121588986	121588778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_121588800_121589000
ONT_simulated_read_4144081	chr2	+	759	6	ISM	ENSMUSG00000017721.16	ENST00000640210.1	1349	9	11	4925	11	-520	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTCGTGCCCTGGTAC	NA	NA	NA	NA	NA	NA	NA	NA	164339480	164344520	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_164339678_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397
ONT_simulated_read_4145582	chr17	-	746	5	ISM	ENSMUSG00000061046.10	ENSMUST00000150324.8	1267	8	973	0	973	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTGTGGTACCAGACAC	NA	NA	NA	NA	NA	NA	NA	NA	26003339	26001798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233
ONT_simulated_read_4146561	chr8	-	534	6	ISM	ENSMUSG00000004994.13	ENSMUST00000098578.10	2119	10	6464	1411	6431	-905	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGGCAAAAGCCAGCCTA	NA	NA	NA	NA	NA	NA	NA	NA	84990545	84985834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_84985881_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490
ONT_simulated_read_4148444	chr7	+	1304	8	ISM	ENSMUSG00000030505.18	ENSMUST00000032715.13	2507	16	20044	226	20044	-226	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATGGCCTAGCATTGTG	NA	NA	NA	NA	NA	NA	NA	NA	49448137	49507787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_49448176_49456274_49456375_49467779_49467859_49476455_49476644_49478691_49478779_49498242_49498294_49498484_49498573_49507114
ONT_simulated_read_414932	chr2	-	1746	7	ISM	ENSMUSG00000027496.16	ENSMUST00000109139.8	1905	9	3335	0	3335	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGAGTACGTGGGTAATC	NA	NA	NA	NA	NA	NA	NA	NA	172209091	172198115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841
ONT_simulated_read_414978	chr17	-	541	1	NIC	ENSMUSG00000004945.16	novel	948	4	NA	NA	6678	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGACTGGTTTCTTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	5483840	5483299	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_5483300_5483800
ONT_simulated_read_4150146	chr7	-	696	1	FSM	ENSMUSG00000074547.5	ENSMUST00000092523.3	612	1	0	-84	0	84	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTCACGAAGATGCACTC	NA	NA	NA	NA	NA	NA	NA	NA	13067182	13066486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_13066500_13067200
ONT_simulated_read_4152434	chr18	-	370	1	FSM	ENSMUSG00000055771.3	ENSMUST00000069529.3	370	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGACTAAAACTCACCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	30628426	30628056	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_30628100_30628400
ONT_simulated_read_415588	chr11	-	1628	4	ISM	ENSMUSG00000018736.15	ENST00000380025.8	2174	8	13087	-8	13041	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCGAGATTGCTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	68730826	68712259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_68713492_68724179_68724272_68726975_68727150_68730696
ONT_simulated_read_4156143	chr6	-	461	1	ISM	ENSMUSG00000037621.9	ENSMUST00000042646.8	2355	3	28453	487	28453	-487	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGACAAGCAGGCTGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	72184108	72183647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_72183600_72184100
ONT_simulated_read_4156509	chr18	-	448	2	ISM	ENSMUSG00000005873.7	ENST00000513339.5	684	4	16116	-1	16116	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	244	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGTTGGGAATCTCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	34490283	34479912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_34480222_34490144
ONT_simulated_read_4158113	chr2	+	2671	1	FSM	ENSMUSG00000102599.2	ENSMUST00000194293.2	3421	1	0	750	0	-750	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCATACTTTTAACCT	NA	NA	NA	NA	NA	NA	NA	NA	6484500	6487171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_6484500_6487200
ONT_simulated_read_4161608	chr9	-	1261	8	ISM	ENSMUSG00000020253.16	ENSMUST00000076258.13	1811	10	981	120	981	-120	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAAATCTCAAGTTATTAT	NA	NA	NA	NA	NA	NA	NA	NA	106075160	106072269	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_106072670_106072985_106073138_106073248_106073357_106073566_106073631_106073791_106073911_106074002_106074088_106074425_106074539_106074940
ONT_simulated_read_4162517	chr1	-	729	3	ISM	ENSMUSG00000026234.13	ENST00000678246.1	2344	14	1983	5862	1983	-5862	internal_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGTAAGCCTGCAAAACTG	NA	NA	NA	NA	NA	NA	NA	NA	86285137	86284095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_86284180_86284277_86284464_86284678
ONT_simulated_read_4163029	chr6	-	116	1	ISM	ENSMUSG00000033152.14	ENSMUST00000038409.12	1994	8	8779	22586	8779	-22572	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACGCCGGCCTAGCCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	88842248	88842132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_88842100_88842200
ONT_simulated_read_416399	chr6	+	266	3	ISM	ENSMUSG00000029769.17	ENST00000487361.5	2118	11	15172	4920	9615	-4838	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGCCTCTTGTAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	29412482	29422018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_29412534_29412900_29413087_29421989
ONT_simulated_read_416572	chr11	-	412	1	ISM	ENSMUSG00000061666.7	ENSMUST00000020804.8	2336	10	38767	1017	38767	-1017	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTGTAAATCTGAAATCA	NA	NA	NA	NA	NA	NA	NA	NA	86926121	86925709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_86925700_86926100
ONT_simulated_read_4166632	chr15	-	772	2	ISM	ENSMUSG00000005354.17	ENSMUST00000109748.9	2049	3	4302	0	4302	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTACCTCTTGCTGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	77808866	77799409	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_77800058_77808742
ONT_simulated_read_4168207	chrX	-	705	1	ISM	ENSMUSG00000047242.15	ENSMUST00000055497.15	2633	7	11261	1053	11261	-1053	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGCCTGGCACTCTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	105252246	105251541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_105251500_105252200
ONT_simulated_read_4169556	chr9	+	1132	12	ISM	ENSMUSG00000057193.9	ENSMUST00000217461.2	3478	22	41	9635	41	-8586	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCCTGGAGAGCCGGGG	NA	NA	NA	NA	NA	NA	NA	NA	21232034	21256689	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588
ONT_simulated_read_4171020	chr19	-	2343	11	ISM	ENSMUSG00000025200.8	ENSMUST00000026218.7	3581	14	4375	951	4375	-951	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCAATGTTTCATGTGT	NA	NA	NA	NA	NA	NA	NA	NA	44119940	44098026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_44099100_44101387_44101486_44102112_44102233_44102962_44103173_44109311_44109392_44110287_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117636_44117852_44119850
ONT_simulated_read_417216	chr2	-	1183	9	ISM	ENSMUSG00000033486.15	ENSMUST00000038073.5	2247	13	3257	3336	16	-738	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATTGATCCTGAGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	121241016	121228171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_121228370_121229926_121229951_121230217_121230318_121230524_121230704_121236809_121236935_121237187_121237344_121237823_121237997_121240618_121240688_121240857
ONT_simulated_read_4172246	chr8	-	508	1	ISM	ENSMUSG00000056204.9	ENSMUST00000070173.9	4883	5	8984	3812	8897	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCTGTCTGTGTCTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	71103404	71102896	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71102900_71103400
ONT_simulated_read_4172946	chr17	-	210	1	ISM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	10462	2364	6600	-110	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCCCTAGACAACACTGT	NA	NA	NA	NA	NA	NA	NA	NA	56587049	56586839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56586800_56587000
ONT_simulated_read_4173064	chr10	-	1953	14	ISM	ENSMUSG00000020076.8	ENSMUST00000020270.6	2535	15	4047	358	4047	-358	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGTCGATCTGGTGGCCG	NA	NA	NA	NA	NA	NA	NA	NA	62482950	62452151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692
ONT_simulated_read_4173330	chr9	-	445	4	FSM	ENSMUSG00000032508.9	ENST00000651800.2	720	4	275	0	275	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCCTGGGAGCCCTAGGT	NA	NA	NA	NA	NA	NA	NA	NA	119168757	119166418	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_119166577_119166819_119166912_119167641_119167777_119168697
ONT_simulated_read_4173375	chr3	-	1577	5	ISM	ENSMUSG00000027864.10	ENSMUST00000102694.4	5902	9	49242	2948	49242	-2948	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACAGCTCTTCTTCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	100968352	100950495	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_100950839_100952759_100953066_100957405_100957514_100963551_100963972_100967952
ONT_simulated_read_4173904	chr2	+	348	3	ISM	ENSMUSG00000047250.14	ENST00000540753.6	1631	9	3504	8428	3504	-8428	internal_fragment	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGGATGATGAGCAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	36130724	36132973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_36130790_36130882_36130967_36132774
ONT_simulated_read_4174835	chr12	-	1143	1	ISM	ENSMUSG00000021236.17	ENSMUST00000021662.12	4931	15	28139	2338	23548	482	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGAGGTGTGGAAAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	84424111	84422968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_84423000_84424100
ONT_simulated_read_4175411	chr9	-	254	1	ISM	ENSMUSG00000025786.18	ENSMUST00000147563.9	6987	7	34912	5730	22275	122	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAAAAGTCCTCATG	NA	NA	NA	NA	NA	NA	NA	NA	122907358	122907104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_122907100_122907400
ONT_simulated_read_4176715	chr8	+	1332	13	ISM	ENSMUSG00000033192.6	ENST00000262134.10	1599	14	25	4678	25	-4538	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCACCATTCTGCAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	93582107	93640913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_93582254_93591528_93591669_93596275_93596494_93597765_93597879_93599675_93599737_93600860_93600920_93602182_93602218_93606027_93606083_93613193_93613277_93615900_93616027_93617300_93617455_93635814_93635914_93640870
ONT_simulated_read_4177543	chr14	-	630	5	NNC	ENSMUSG00000022090.11	novel	1578	10	NA	NA	2879	-109	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCTACTCTATGCCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	70409052	70402104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr14_-_70402243_70403538_70403657_70405109_70405235_70405388_70405494_70408908
ONT_simulated_read_4178495	chr10	-	575	1	ISM	ENSMUSG00000020251.14	ENSMUST00000020485.10	2153	10	39158	485	39125	-485	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGGCTCTGACATTCTC	NA	NA	NA	NA	NA	NA	NA	NA	82487326	82486751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_82486800_82487300
ONT_simulated_read_4180517	chr4	+	756	7	ISM	ENSMUSG00000057375.14	ENSMUST00000075693.12	1321	10	1400	14755	1400	-14755	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTCAGGCTCTGTGTTGG	NA	NA	NA	NA	NA	NA	NA	NA	107172959	107202264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205
ONT_simulated_read_4180936	chr11	+	984	4	ISM	ENSMUSG00000007850.17	ENST00000393432.8	2243	14	6100	-3	5524	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCTGTCTGTGCTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	50274657	50277354	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_50274748_50275470_50275564_50275967_50276018_50276603
ONT_simulated_read_4181915	chr5	-	847	2	ISM	ENSMUSG00000029191.17	ENSMUST00000172732.8	4699	25	71200	627	71143	123	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTACTTTCCTTATTAA	NA	NA	NA	NA	NA	NA	NA	NA	65421764	65419821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_65420490_65421585
ONT_simulated_read_4184340	chr9	+	1453	7	NIC	ENSMUSG00000070284.11	novel	2702	9	NA	NA	111	270	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGAAGGAGTGCTACCTCG	NA	NA	NA	NA	NA	NA	NA	NA	107926653	107929171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107928258_107928442_107928524
ONT_simulated_read_4185021	chr4	+	710	7	ISM	ENSMUSG00000028608.16	ENSMUST00000119394.8	741	8	253	0	220	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTATTCTCAGAAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	107747315	107753058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107752747
ONT_simulated_read_4186548	chr9	-	1315	1	NIC	ENSMUSG00000043923.9	novel	1725	11	NA	NA	4824	-523	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATAGTGAAACCATTAATC	NA	NA	NA	NA	NA	NA	NA	NA	44324494	44323179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_44323200_44324500
ONT_simulated_read_4186709	chr18	+	1036	5	ISM	ENSMUSG00000037058.17	ENSMUST00000235476.2	1569	7	481	432	0	236	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGGTCAGATAGGAGCTA	NA	NA	NA	NA	NA	NA	NA	NA	35733117	35749808	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_35733171_35741790_35741873_35743923_35744088_35746375_35746556_35749251
ONT_simulated_read_4187338	chrX	-	441	3	ISM	ENSMUSG00000067377.13	ENSMUST00000087557.12	1765	8	3859	592	3859	-592	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACTGGTGGAACTTTAAC	NA	NA	NA	NA	NA	NA	NA	NA	132795319	132792408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_132792673_132793410_132793516_132795247
ONT_simulated_read_4187414	chr2	+	613	4	ISM	ENSMUSG00000014873.16	ENSMUST00000015017.8	1203	6	302	857	302	-857	internal_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCACAAGAGGGGTCGT	NA	NA	NA	NA	NA	NA	NA	NA	26806680	26809338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_26806872_26807439_26807544_26808884_26809068_26809203
ONT_simulated_read_4190444	chr9	-	1125	10	ISM	ENSMUSG00000032122.16	ENSMUST00000161114.2	2945	19	-92	6563	-92	-6563	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTTCAGGGGAAGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	37166802	37148174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_37148266_37148595_37148749_37149032_37149071_37149511_37149679_37150426_37150504_37150914_37151051_37152387_37152467_37152584_37152679_37153174_37153257_37166594
ONT_simulated_read_4190744	chr7	+	910	1	ISM	ENSMUSG00000005566.15	ENSMUST00000005705.8	3245	17	0	5974	0	-5964	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTACTGGGTGGCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	12758078	12758988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_12758100_12759000
ONT_simulated_read_4191275	chr19	-	833	1	FSM	ENSMUSG00000096592.2	ENSMUST00000120920.2	522	1	0	-311	0	311	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATATTATTAGTCTATAA	NA	NA	NA	NA	NA	NA	NA	NA	40549502	40548669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_40548700_40549500
ONT_simulated_read_4192096	chr8	+	946	5	ISM	ENSMUSG00000031532.8	ENSMUST00000033933.8	1860	6	105	2293	105	-2293	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGGCCTACTCACCCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	34621834	34635682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_34621991_34628348_34628528_34632294_34632695_34634872_34635012_34635610
ONT_simulated_read_419214	chr5	-	1249	10	ISM	ENSMUSG00000028949.14	ENSMUST00000030791.12	1735	13	5937	0	5937	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTGTGGTCATTGTG	NA	NA	NA	NA	NA	NA	NA	NA	24801073	24797619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_24797803_24798014_24798117_24798222_24798346_24798634_24798771_24798919_24799018_24799829_24799992_24800140_24800243_24800387_24800484_24800720_24800844_24800949
ONT_simulated_read_4192507	chr1	+	1282	9	ISM	ENSMUSG00000015222.19	ENST00000447185.5	5475	12	35599	47	35599	-47	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGCTGAGGATGTCACT	NA	NA	NA	NA	NA	NA	NA	NA	66455269	66478119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_66455307_66455502_66455710_66455890_66456026_66459293_66459356_66460804_66460950_66464355_66464688_66472672_66472755_66477412_66477526_66477950
ONT_simulated_read_419551	chr7	-	1288	6	ISM	ENSMUSG00000002068.17	ENST00000262643.8	1939	11	6790	-1	16	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTCTTAACTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	37800112	37797408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_37798063_37798416_37798575_37798671_37798784_37798892_37799028_37799213_37799310_37799979
ONT_simulated_read_419613	chr16	+	1669	5	ISM	ENSMUSG00000022678.17	ENSMUST00000023359.13	2287	9	20298	0	20228	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTGTGCATTGTATAT	NA	NA	NA	NA	NA	NA	NA	NA	14001436	14010792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
ONT_simulated_read_4196330	chr7	-	491	5	ISM	ENSMUSG00000089989.11	ENSMUST00000209467.2	1477	13	2215	1139	2215	-1139	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCAACCCCTCCCGAGG	NA	NA	NA	NA	NA	NA	NA	NA	44783440	44776484	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44776517_44776632_44776699_44776919_44776993_44781651_44781837_44783305
ONT_simulated_read_4198795	chr14	-	964	1	ISM	ENSMUSG00000097589.10	ENSMUST00000182768.8	1442	5	78571	0	44820	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATACACTACTGTATGACA	NA	NA	NA	NA	NA	NA	NA	NA	61841251	61840287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_61840300_61841300
ONT_simulated_read_4200609	chr1	+	1358	11	ISM	ENSMUSG00000026253.15	ENSMUST00000027470.14	2780	12	0	1700	0	-1700	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGGCTCGTGCCCGACG	NA	NA	NA	NA	NA	NA	NA	NA	87133532	87138716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_87133602_87133796_87133937_87134189_87134235_87134371_87134482_87135108_87135265_87135929_87136028_87136736_87136938_87137148_87137264_87137485_87137601_87138245_87138463_87138624
ONT_simulated_read_42022	chr1	-	633	1	ISM	ENSMUSG00000026361.10	ENSMUST00000018337.9	11586	17	94368	9093	94114	-517	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATGAATGTACATTCTC	NA	NA	NA	NA	NA	NA	NA	NA	143484263	143483630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_143483600_143484300
ONT_simulated_read_4206063	chr6	+	286	3	ISM	ENSMUSG00000030060.15	ENSMUST00000032141.14	1464	7	23	18764	23	-18764	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCCATGCGATGGGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	87890939	87894847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_87890994_87891472_87891678_87894820
ONT_simulated_read_4206264	chr14	-	1012	1	ISM	ENSMUSG00000115665.2	ENSMUST00000226569.2	1926	5	33122	484	33122	-484	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTGATCGCTGGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	46841758	46840746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_46840700_46841800
ONT_simulated_read_4206375	chr7	-	1216	4	ISM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	1948	319	912	-311	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	3103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGGTGTGTTTTGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	99130997	99127421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903
ONT_simulated_read_4206642	chr1	-	197	1	ISM	ENSMUSG00000039239.15	ENSMUST00000045288.14	5116	7	259	82742	-30	-81316	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGGGTGTAGGCCACAGC	NA	NA	NA	NA	NA	NA	NA	NA	186437927	186437730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_186437700_186437900
ONT_simulated_read_4207458	chr15	-	579	4	ISM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	9117	56	9117	-56	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	261	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGCTCCTGTTCTCTAG	NA	NA	NA	NA	NA	NA	NA	NA	77845896	77843253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813
ONT_simulated_read_4208550	chr2	+	324	1	ISM	ENSMUSG00000026833.19	ENSMUST00000113920.8	2513	6	101	37046	0	-21009	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCAGCCTCCTGGTCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	28083104	28083428	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_28083100_28083400
ONT_simulated_read_421012	chr9	-	1103	1	ISM	ENSMUSG00000066357.7	ENSMUST00000068700.7	4163	6	5326	0	5326	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGCCTTACCATCTCC	NA	NA	NA	NA	NA	NA	NA	NA	108450612	108449509	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_108449500_108450600
ONT_simulated_read_4211414	chr3	-	1082	6	ISM	ENSMUSG00000089911.5	ENSMUST00000029570.9	2782	12	21317	796	21317	-796	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGCTGACTCAGCGACACT	NA	NA	NA	NA	NA	NA	NA	NA	116435009	116425608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_116426130_116427370_116427535_116428551_116428650_116429926_116430040_116434035_116434108_116434895
ONT_simulated_read_4217766	chr16	+	1125	8	ISM	ENSMUSG00000022761.13	ENSMUST00000023444.11	3394	21	0	6804	0	-6273	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCTCTGGGTCTTGAGGG	NA	NA	NA	NA	NA	NA	NA	NA	17326551	17337393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337250
ONT_simulated_read_4217795	chr7	+	932	4	FSM	ENSMUSG00000025464.16	ENST00000480071.2	942	4	-36	46	0	-46	multi-exon	FALSE	canonical	NA	NA	NA	NA	564	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGAAGTGCTTCTGTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	139705620	139711626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_139705796_139706238_139706729_139707420_139707621_139711559
ONT_simulated_read_4217946	chr5	+	398	3	ISM	ENSMUSG00000029723.17	ENSMUST00000100539.10	3983	5	5186	2180	5186	-204	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTCCCCAGGCTCGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	137749443	137757490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_137749631_137756945_137756995_137757328
ONT_simulated_read_42184	chr2	+	349	2	ISM	ENSMUSG00000027589.15	ENST00000369758.8	1403	4	62	12540	62	-12540	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAAGTACGGCCAGACGC	NA	NA	NA	NA	NA	NA	NA	NA	181484246	181486285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_181484499_181486188
ONT_simulated_read_4220645	chrX	+	629	2	ISM	ENSMUSG00000035299.17	ENST00000317552.9	2356	10	58	61867	0	-61867	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGTCCTCTGCCGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	168662659	168710332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_168662906_168709949
ONT_simulated_read_42235	chr5	-	580	5	ISM	ENSMUSG00000029201.15	ENSMUST00000031103.14	2550	12	12614	4393	12614	-4393	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATGGACGAGGGTGCACA	NA	NA	NA	NA	NA	NA	NA	NA	65580678	65574956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_65574988_65575820_65575952_65577591_65577687_65579977_65580126_65580503
ONT_simulated_read_4224357	chr1	-	1282	1	Antisense	novelGene_ENSMUSG00000015222.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATCCAGCTTGTCATTAG	NA	NA	NA	NA	NA	NA	NA	NA	66455285	66454003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr1_-_66454000_66455300
ONT_simulated_read_4225913	chr7	+	1655	14	NIC	ENSMUSG00000030769.16	novel	2396	17	NA	NA	0	-119	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAACAAAGAGGAGCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	122814035	122872285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_+_122814221_122837346_122837419_122838591_122838697_122839961_122840022_122847160_122847266_122849293_122849400_122851635_122851717_122859729_122859866_122864411_122864520_122864879_122864961_122866971_122867141_122868245_122868462_122869063_122869233_122872223
ONT_simulated_read_422845	chr18	-	523	5	ISM	ENSMUSG00000062526.5	ENST00000557286.2	911	7	7850	0	7850	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACGTAAACCTTTATTATT	NA	NA	NA	NA	NA	NA	NA	NA	67362819	67359852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_67359995_67360667_67360791_67361083_67361193_67362000_67362076_67362745
ONT_simulated_read_4228586	chr4	+	716	6	ISM	ENSMUSG00000028683.15	ENSMUST00000106447.9	3754	10	2747	7870	0	-7870	internal_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTCCTCAGCTTCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	116879351	116922587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116915960_116916051_116922537
ONT_simulated_read_4230881	chr11	-	1545	8	ISM	ENSMUSG00000020120.16	ENSMUST00000102881.10	4101	10	13913	2213	13913	-1955	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGGTCTAATGAACAGTAA	NA	NA	NA	NA	NA	NA	NA	NA	16944789	16923418	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_16924154_16931800_16931934_16933195_16933266_16935528_16935613_16937455_16937561_16940050_16940236_16942887_16942980_16944648
ONT_simulated_read_4231401	chr17	-	1243	7	ISM	ENSMUSG00000058704.10	ENST00000404530.6	1466	10	40179	0	39494	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTGATTTAAACTTATT	NA	NA	NA	NA	NA	NA	NA	NA	74562291	74507696	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74548899_74549012_74551969_74552083_74562222
ONT_simulated_read_423241	chr12	+	728	6	ISM	ENSMUSG00000021024.15	ENSMUST00000021412.9	1042	7	20	4032	20	-3888	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTGTTCTGTCGATTGAC	NA	NA	NA	NA	NA	NA	NA	NA	55445579	55461207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_55445777_55454253_55454349_55454786_55454869_55456911_55457068_55458971_55459151_55461188
ONT_simulated_read_4233799	chr5	-	1296	8	NNC	ENSMUSG00000029422.16	novel	1665	11	NA	NA	5726	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACCCACTTCCATTAAAC	NA	NA	NA	NA	NA	NA	NA	NA	123881708	123867069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871694_123874621_123874745_123877554_123877759_123878734_123878948_123881700
ONT_simulated_read_4238837	chr5	-	841	1	ISM	ENSMUSG00000066900.12	ENSMUST00000086471.12	2425	12	23190	288	23190	-288	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGGCCCTCTTGCTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	117230873	117230032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_117230000_117230900
ONT_simulated_read_4239275	chrX	+	1976	11	ISM	ENSMUSG00000000787.13	ENST00000644074.1	4630	17	6761	2025	6761	-1630	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGGGGAAAAACAAACAACAA	NA	NA	NA	NA	NA	NA	NA	NA	13154023	13158261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ONT_simulated_read_4239665	chr3	+	404	3	ISM	ENSMUSG00000001418.14	ENSMUST00000177005.8	4219	6	59	5170	0	-2220	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGGGGGCACAGCCTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	88232388	88233450	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_88232509_88232983_88233239_88233421
ONT_simulated_read_4240313	chr7	-	994	7	ISM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	4497	671	0	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTACTCTAACTTGCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	141937278	141930318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154
ONT_simulated_read_424045	chr16	-	456	1	ISM	ENSMUSG00000022641.16	ENSMUST00000138166.8	8743	17	234776	5315	133379	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGACGCACTGCACTAGT	NA	NA	NA	NA	NA	NA	NA	NA	50017977	50017521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_50017500_50018000
ONT_simulated_read_4241968	chr1	+	552	6	ISM	ENSMUSG00000026319.14	ENSMUST00000039173.13	4328	29	558	62143	518	-61779	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAACATTCCCAAACCCCC	NA	NA	NA	NA	NA	NA	NA	NA	105592165	105619657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_105592359_105605887_105605978_105614673_105614746_105614854_105614911_105615006_105615121_105619630
ONT_simulated_read_4242103	chr2	+	1326	8	ISM	ENSMUSG00000027395.16	ENSMUST00000028874.8	2769	13	0	8019	0	-8019	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAACAGAGCTAACAAGACC	NA	NA	NA	NA	NA	NA	NA	NA	128942946	128954669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952132_128954561
ONT_simulated_read_4243864	chr1	+	210	3	ISM	ENSMUSG00000079429.10	ENST00000389758.3	4915	40	29562	891	29562	-891	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGGCTTCCTGTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	88185530	88186861	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_88185588_88186304_88186437_88186840
ONT_simulated_read_4244563	chr16	+	967	8	ISM	ENSMUSG00000008658.17	ENSMUST00000229741.2	1407	13	0	79371	0	-78192	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCCCACAGTTGTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	6887709	7148306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_6887950_7042174_7042415_7094888_7095033_7103341_7103396_7110048_7110142_7111933_7111995_7124271_7124326_7148225
ONT_simulated_read_4248375	chr15	-	1004	3	ISM	ENSMUSG00000022280.10	ENSMUST00000228358.2	3452	8	17081	14124	17081	-14124	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGGAGTTGCAATCATAT	NA	NA	NA	NA	NA	NA	NA	NA	36266163	36254620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_36254674_36260160_36260370_36265421
ONT_simulated_read_4248862	chr17	-	445	3	ISM	ENSMUSG00000024053.12	ENSMUST00000024849.11	3906	8	54274	3027	54117	-3016	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTTTCCCAGCGATGGA	NA	NA	NA	NA	NA	NA	NA	NA	71563682	71562194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_71562243_71562974_71563008_71563318
ONT_simulated_read_4250322	chr5	+	1689	17	ISM	ENSMUSG00000029221.16	ENSMUST00000162372.8	5711	18	8771	3731	8771	-3728	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTCTCTTCTAATCATG	NA	NA	NA	NA	NA	NA	NA	NA	67473068	67512055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_67473189_67482016_67482077_67484195_67484296_67485040_67485134_67485784_67485868_67487235_67487295_67490396_67490465_67491908_67492012_67497293_67497350_67499436_67499573_67501872_67501913_67502968_67503041_67503468_67503577_67505262_67505429_67507124_67507255_67509994_67510109_67511874
ONT_simulated_read_4251271	chr1	+	742	5	ISM	ENSMUSG00000035131.15	ENSMUST00000166814.8	2760	8	17	155956	17	-155955	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATGACAACCTAGATTCT	NA	NA	NA	NA	NA	NA	NA	NA	146373441	146622254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_146373479_146390405_146390692_146558313_146558505_146577393_146577585_146622217
ONT_simulated_read_4251453	chr12	-	314	1	NIC	ENSMUSG00000020664.11	novel	2544	14	NA	NA	19096	-158	mono-exon	FALSE	NA	NA	NA	NA	NA	188	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAGATTCAACTTCACTGA	NA	NA	NA	NA	NA	NA	NA	NA	31382242	31381928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_31381900_31382200
ONT_simulated_read_4251541	chr7	-	1128	7	ISM	ENSMUSG00000030718.10	ENSMUST00000032963.10	2772	14	0	15109	0	-15109	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAACCCACAAACCTAAGAC	NA	NA	NA	NA	NA	NA	NA	NA	100021514	99991052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_99991144_99994158_99994314_99997011_99997064_99997328_99997387_100003915_100004009_100004474_100004569_100020929
ONT_simulated_read_4252631	chr5	-	914	6	ISM	ENSMUSG00000029730.17	ENSMUST00000148879.8	1351	9	2375	69	1804	-61	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCTCAAGAAAAAATCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	138167705	138162930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_138163166_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610
ONT_simulated_read_4253660	chr4	+	1516	17	NNC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	4	-3325	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTCCAGCATCTTCTCA	NA	NA	NA	NA	NA	NA	NA	NA	34614960	34656842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630476_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767
ONT_simulated_read_4255448	chr4	-	926	1	ISM	ENSMUSG00000003282.10	ENSMUST00000003369.10	4774	6	33445	3016	33445	-322	mono-exon	FALSE	NA	NA	NA	NA	NA	295	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGGGACCTCTCCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	3904937	3904011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_3904000_3904900
ONT_simulated_read_4255664	chr15	-	2384	9	ISM	ENSMUSG00000022241.7	ENST00000455217.6	2179	18	7503	-1307	7503	-416	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	357	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCTGGGCAAATGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	11389829	11382802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661
ONT_simulated_read_4256315	chr1	-	750	3	ISM	ENSMUSG00000026398.15	ENSMUST00000168126.7	3446	7	58784	929	58784	109	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACTTACAGATGGAGACC	NA	NA	NA	NA	NA	NA	NA	NA	136818516	136772942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_136773449_136810001_136810150_136818420
ONT_simulated_read_4257531	chr10	-	325	2	ISM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	9324	3995	9324	-3995	internal_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTCAGTGGTGGCATCC	NA	NA	NA	NA	NA	NA	NA	NA	57399302	57395864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_57395939_57399051
ONT_simulated_read_4260093	chr6	-	1126	7	ISM	ENSMUSG00000029701.16	ENSMUST00000007993.16	4465	19	27390	1605	27390	-1605	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTCTCAAATGGAAACTAT	NA	NA	NA	NA	NA	NA	NA	NA	29137615	29125179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_29125524_29127796_29127900_29128427_29128685_29131265_29131341_29131625_29131776_29135406_29135566_29137577
ONT_simulated_read_4260602	chr12	-	290	3	ISM	ENSMUSG00000021290.7	ENSMUST00000222874.2	612	4	3563	-1	3563	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGCTTCCCCTGAGTA	NA	NA	NA	NA	NA	NA	NA	NA	111929765	111927808	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_111927973_111928866_111928891_111929663
ONT_simulated_read_4261547	chr13	-	257	1	ISM	ENSMUSG00000021411.17	ENSMUST00000053459.15	2684	5	24598	798	24598	-798	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAGAGGCACACGGGATC	NA	NA	NA	NA	NA	NA	NA	NA	34812871	34812614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_34812600_34812900
ONT_simulated_read_4263165	chr16	-	1449	6	ISM	ENSMUSG00000022757.20	ENST00000674615.1	2004	8	11724	-1	7136	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTCTTGTTGCCTAAT	NA	NA	NA	NA	NA	NA	NA	NA	56526057	56510694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_56511517_56514762_56514853_56517821_56517960_56521431_56521600_56524789_56524937_56525973
ONT_simulated_read_4265159	chr9	+	436	3	ISM	ENSMUSG00000042073.16	ENSMUST00000048527.15	1745	4	278	1380	0	-726	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGCCCCCGGGTCCCAAC	NA	NA	NA	NA	NA	NA	NA	NA	106325851	106328742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_106325909_106327202_106327431_106328591
ONT_simulated_read_4265884	chr8	+	562	1	ISM	ENSMUSG00000031530.7	ENSMUST00000033930.5	2740	4	0	12036	0	-12036	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCGGCGGCAAGTGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	35274450	35275012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_35274400_35275000
ONT_simulated_read_4266152	chr8	+	966	6	ISM	ENSMUSG00000097248.10	ENSMUST00000210935.2	1125	7	0	1146	0	506	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTCCCCAGCTGAACACA	NA	NA	NA	NA	NA	NA	NA	NA	88187096	88251034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_88187333_88221484_88221786_88222337_88222490_88240436_88240525_88248363_88248442_88250923
ONT_simulated_read_426620	chr13	-	743	1	ISM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	1843	1021	1843	-1021	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACGTCAAGACGGCCGTGT	NA	NA	NA	NA	NA	NA	NA	NA	34312494	34311751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_34311800_34312500
ONT_simulated_read_4267591	chr2	+	197	1	ISM	ENSMUSG00000027207.16	ENSMUST00000094604.9	1928	10	0	117284	0	-117284	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAAACTGCAGAGGGATC	NA	NA	NA	NA	NA	NA	NA	NA	125708026	125708223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_125708000_125708200
ONT_simulated_read_4267841	chr18	+	502	4	ISM	ENSMUSG00000037236.17	ENSMUST00000237744.2	2845	15	22357	0	22357	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	171	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTTTGATTTTAATGTTA	NA	NA	NA	NA	NA	NA	NA	NA	35717862	35723517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_35717935_35720683_35720907_35721384_35721507_35723432
ONT_simulated_read_4268331	chr12	+	1293	9	ISM	ENSMUSG00000047022.19	ENSMUST00000130447.4	2171	12	23910	379	23910	-379	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGTGTGAAGTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	57352868	57543606	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57543243
ONT_simulated_read_4268858	chr12	-	662	5	ISM	ENSMUSG00000079055.11	ENSMUST00000085238.13	4927	7	118995	1896	101929	-318	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACGTCACAGGCAGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	81260943	81246584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_81246642_81249016_81249293_81250827_81250928_81251665_81251791_81260839
ONT_simulated_read_4276863	chr5	+	1900	7	ISM	ENSMUSG00000002748.8	ENSMUST00000002825.6	6492	19	0	28917	0	-28917	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCTCTCCAATGAAGATA	NA	NA	NA	NA	NA	NA	NA	NA	135216117	135246066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_135216611_135225325_135225443_135227024_135227170_135233843_135234046_135237896_135238019_135239594_135239793_135245443
ONT_simulated_read_428588	chr8	-	1389	7	ISM	ENSMUSG00000031781.15	ENSMUST00000034233.15	1807	9	6343	-83	-8	83	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAATTGTTTTTGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	95558550	95549105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400
ONT_simulated_read_4286243	chr8	-	151	2	ISM	ENSMUSG00000038215.16	ENSMUST00000040330.15	1690	11	7850	9463	7850	-9463	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTGAAGGGACAGTAACC	NA	NA	NA	NA	NA	NA	NA	NA	56996042	56994019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_56994069_56995940
ONT_simulated_read_4286383	chr14	-	2542	15	ISM	ENSMUSG00000021870.18	ENST00000671191.1	5530	25	74696	864	73433	305	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTTTAGATAAGCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	26181340	26135145	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26174692_26174756_26180564_26180616_26181058_26181110_26181196
ONT_simulated_read_4288174	chr2	+	479	5	ISM	ENSMUSG00000039263.17	ENSMUST00000044415.16	2467	12	831	6967	831	-6967	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACACCCCTGATGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	173952972	173957896	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_173953056_173953406_173953578_173955689_173955780_173956189_173956272_173957843
ONT_simulated_read_4288485	chr8	-	2059	5	ISM	ENSMUSG00000061313.11	ENSMUST00000033975.9	4246	18	19170	501	929	-501	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGTAAGTTTTGTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	26225138	26215873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035
ONT_simulated_read_4289962	chr2	+	1587	12	FSM	ENSMUSG00000027523.21	ENST00000477931.5	1662	12	76	-1	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	NA	NA	NA	NA	NA	NA	NA	174169549	174188537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_174169735_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ONT_simulated_read_4291812	chr19	+	752	7	FSM	ENSMUSG00000025172.4	ENST00000455090.1	754	7	2	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTCTGTTCCTCGGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	42024476	42032581	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_42024562_42028288_42028391_42028522_42028682_42028774_42028883_42030390_42030490_42030807_42030907_42032481
ONT_simulated_read_4292077	chr9	+	987	8	ISM	ENSMUSG00000038535.18	ENSMUST00000184036.8	3459	21	56267	480	-29075	-480	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGGTATCTGATCAAACAGG	NA	NA	NA	NA	NA	NA	NA	NA	72238408	72269693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72258806_72258853_72267567_72267624_72269215
ONT_simulated_read_4293133	chr6	-	546	4	ISM	ENSMUSG00000030265.15	ENST00000407852.2	565	5	19	3926	19	-365	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATACTTTGTACTCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	145192512	145166335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_145166451_145177820_145177981_145179973_145180153_145192420
ONT_simulated_read_429324	chr11	-	946	3	ISM	ENSMUSG00000017176.18	ENSMUST00000107397.2	1348	8	7863	-6	3177	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACGCGTCTTTAATCCC	NA	NA	NA	NA	NA	NA	NA	NA	100323891	100320178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100320776_100321902_100322104_100323743
ONT_simulated_read_4294097	chr15	-	792	7	ISM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	11856	1900	11803	-1898	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCGAGGCAGCCAGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	83021729	83012076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668
ONT_simulated_read_4295416	chr11	-	819	1	ISM	ENSMUSG00000085748.2	ENSMUST00000155836.2	1624	2	513	575	513	-575	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACCATTTTTAAATAAATA	NA	NA	NA	NA	NA	NA	NA	NA	62456696	62455877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_62455900_62456700
ONT_simulated_read_4296418	chrX	+	2015	4	ISM	ENSMUSG00000031198.5	ENSMUST00000033541.5	2562	5	4703	494	4703	-494	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTAAAGGCTAGGCTCACA	NA	NA	NA	NA	NA	NA	NA	NA	74430707	74439571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_74430859_74434389_74434466_74435245_74435378_74437915
ONT_simulated_read_4300194	chr5	-	514	4	ISM	ENSMUSG00000029201.15	ENSMUST00000031103.14	2550	12	18314	657	18314	-657	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	325	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTTTTTAAGGAAACAAA	NA	NA	NA	NA	NA	NA	NA	NA	65574978	65571220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_65571407_65574167_65574279_65574363_65574456_65574853
ONT_simulated_read_4302178	chr19	-	1484	10	ISM	ENSMUSG00000024969.16	ENSMUST00000164205.8	3104	17	55859	483	9507	-126	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAGATGGAGGTGTGCAA	NA	NA	NA	NA	NA	NA	NA	NA	7263305	7254580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_7254816_7255406_7255452_7258362_7258621_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096
ONT_simulated_read_4302248	chr11	-	4140	20	ISM	ENSMUSG00000006920.15	ENSMUST00000107285.8	4193	21	7729	-1	-1355	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCAAGTTGTGTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	101109547	101081940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_101083826_101084044_101084130_101084551_101084633_101085293_101085376_101085711_101085808_101086344_101086524_101090083_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108190_101109479
ONT_simulated_read_4302826	chr19	-	451	3	ISM	ENSMUSG00000024941.10	ENST00000525364.5	2572	16	12098	58	12098	-58	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAGGTCAGGCACATCTA	NA	NA	NA	NA	NA	NA	NA	NA	5809330	5808512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5808725_5808967_5809175_5809298
ONT_simulated_read_4302983	chr1	-	444	1	ISM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	13083	0	13083	0	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCTGACTGGCCTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	10095269	10094825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_10094800_10095300
ONT_simulated_read_4303046	chr12	-	859	1	ISM	ENSMUSG00000035105.6	ENSMUST00000039516.4	2662	5	23205	816	23205	-816	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGGGGAGGGAGATGGGG	NA	NA	NA	NA	NA	NA	NA	NA	54227441	54226582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_54226600_54227400
ONT_simulated_read_4303278	chr5	-	532	4	ISM	ENSMUSG00000029547.11	ENSMUST00000200393.5	7070	47	2871	20573	2871	-20573	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAAACTGAGTCCTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	139758522	139757612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_139757677_139757771_139757932_139758110_139758249_139758352
ONT_simulated_read_4305647	chr9	+	907	8	ISM	ENSMUSG00000055720.11	ENSMUST00000216841.2	1426	11	-26	7941	22	-7941	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGCCATGGCAGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	57818290	57829308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_57818455_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258
ONT_simulated_read_4307227	chr11	-	1056	9	ISM	ENSMUSG00000004393.11	ENSMUST00000004507.11	1956	14	2015	203	1966	-203	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	302	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGTTTGTGGGCACAT	NA	NA	NA	NA	NA	NA	NA	NA	6215757	6209121	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511
ONT_simulated_read_4307635	chr7	-	1020	1	ISM	ENSMUSG00000030545.10	ENSMUST00000032761.8	2241	3	5170	934	5075	436	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCCGGTCATTGCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	79387658	79386638	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_79386600_79387700
ONT_simulated_read_4311957	chr2	-	565	4	ISM	ENSMUSG00000070953.14	ENST00000628863.2	1198	7	11707	216	11707	-191	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATAAAGACTCAGATTCT	NA	NA	NA	NA	NA	NA	NA	NA	34675741	34669439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578
ONT_simulated_read_431297	chr5	+	1313	1	ISM	ENSMUSG00000038023.13	ENSMUST00000037865.13	5345	20	32425	665	32425	-665	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTCCTGCACGCTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	124799541	124800854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_124799500_124800900
ONT_simulated_read_4313561	chr4	+	346	3	ISM	ENSMUSG00000042489.16	ENST00000251195.9	3969	24	-16	31734	-16	-31734	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTACGACGACAGCGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	126450797	126453815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_126450931_126453000_126453110_126453711
ONT_simulated_read_4314753	chr9	+	1022	8	NNC	ENSMUSG00000025785.6	novel	1053	8	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTTGTTAGCATCTCC	NA	NA	NA	NA	NA	NA	NA	NA	122942306	122965194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_+_122942388_122947959_122948058_122948305_122948401_122956870_122957037_122959588_122959660_122959891_122960016_122960949_122961106_122964963
ONT_simulated_read_4317010	chr1	-	1610	11	ISM	ENSMUSG00000026037.15	ENSMUST00000114325.8	1587	15	17712	-328	17712	328	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGGCAATTTAACACTCCA	NA	NA	NA	NA	NA	NA	NA	NA	58522863	58503034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801
ONT_simulated_read_4321841	chr7	-	1684	1	ISM	ENSMUSG00000038520.16	ENSMUST00000047085.16	8750	17	9845	2924	9656	-2924	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGCTAAACCTTGGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	44488654	44486970	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44487000_44488700
ONT_simulated_read_4327906	chr16	-	942	5	NIC	ENSMUSG00000022911.12	novel	3528	10	NA	NA	34731	-1	intron_retention	FALSE	canonical	NA	NA	NA	NA	668	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACGTAAGCAGTCATGGC	NA	NA	NA	NA	NA	NA	NA	NA	62632411	62615778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_62616072_62623082_62623200_62624199_62624426_62626904_62627011_62632211
ONT_simulated_read_4328902	chr4	-	1273	11	ISM	ENSMUSG00000028909.18	ENSMUST00000030741.9	4416	31	44575	4786	27860	-4786	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAGACCGCTGCCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	131520967	131501594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_131501692_131503515_131503666_131504092_131504229_131506333_131506489_131507173_131507291_131507385_131507484_131508140_131508178_131514618_131514696_131515076_131515153_131515685_131515877_131520828
ONT_simulated_read_4329709	chr10	+	490	5	ISM	ENSMUSG00000001785.14	ENSMUST00000001836.11	2572	15	53	12582	53	-12582	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCCGACTGACAACCTCA	NA	NA	NA	NA	NA	NA	NA	NA	85707747	85712378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712248_85712349
ONT_simulated_read_4330905	chr11	-	978	1	ISM	ENSMUSG00000020288.14	ENSMUST00000109539.8	3583	9	7370	1701	7294	815	mono-exon	FALSE	NA	NA	NA	NA	NA	215	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCGATCAGAGGCAATCTG	NA	NA	NA	NA	NA	NA	NA	NA	23440560	23439582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_23439600_23440600
ONT_simulated_read_4334093	chr7	-	646	1	ISM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	15980	957	15980	-957	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATATATATTTTTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	19639105	19638459	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_19638500_19639100
ONT_simulated_read_4334661	chr11	-	168	1	ISM	ENSMUSG00000020868.16	ENSMUST00000116349.9	3442	11	10984	2513	10984	-2513	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGTAGATGCGGATACCGA	NA	NA	NA	NA	NA	NA	NA	NA	94557357	94557189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_94557200_94557400
ONT_simulated_read_4334800	chr13	+	1781	10	ISM	ENSMUSG00000005583.17	ENSMUST00000197146.5	6088	11	2070	3997	0	-260	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACCGGTAATTGTAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	83723795	83811202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_83723850_83740896_83741101_83773383_83773528_83781173_83781361_83783540_83783589_83800932_83801106_83802716_83802741_83803625_83803756_83804335_83804472_83810521
ONT_simulated_read_4335606	chr10	-	1611	9	ISM	ENSMUSG00000036112.16	ENST00000261220.13	1817	10	2641	1	2641	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGATACATTTTAATGTG	NA	NA	NA	NA	NA	NA	NA	NA	93722932	93696789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93722855
ONT_simulated_read_4335616	chr8	-	911	1	ISM	ENSMUSG00000031819.14	ENSMUST00000034277.14	4942	5	9901	3396	9867	523	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTAAGTGGGGAAGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	121384959	121384048	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_121384000_121385000
ONT_simulated_read_4338779	chr3	-	819	6	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	725	1050	725	-1050	internal_fragment	FALSE	canonical	NA	NA	NA	NA	673	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAACACATGATAGACT	NA	NA	NA	NA	NA	NA	NA	NA	105866690	105851063	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
ONT_simulated_read_4339264	chr1	-	471	3	ISM	ENSMUSG00000026442.15	ENST00000513543.6	4106	26	63407	27802	63405	2008	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCAATGGGAGAGGTGACG	NA	NA	NA	NA	NA	NA	NA	NA	132529920	132525564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_132525708_132527836_132527953_132529708
ONT_simulated_read_4340598	chr2	-	931	10	ISM	ENSMUSG00000040272.15	ENSMUST00000068513.11	1872	15	6691	550	6691	-550	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAACCCGGCTGGTTCCG	NA	NA	NA	NA	NA	NA	NA	NA	93673333	93666332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93672893_93672961_93673263
ONT_simulated_read_4343842	chrX	-	1816	1	ISM	ENSMUSG00000009406.14	ENSMUST00000009550.14	3548	6	15072	326	1994	-326	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTTTTACCACGTTGACT	NA	NA	NA	NA	NA	NA	NA	NA	20801775	20799959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_20800000_20801800
ONT_simulated_read_4345312	chr7	-	1593	1	NIC	ENSMUSG00000059975.16	novel	2060	7	NA	NA	7470	-201	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTATCCACATCCGGGG	NA	NA	NA	NA	NA	NA	NA	NA	29635460	29633867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_29633900_29635500
ONT_simulated_read_4347194	chr3	-	696	1	ISM	ENSMUSG00000040747.10	ENSMUST00000038845.10	1742	8	29308	225	29308	-225	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCATCCATCCATCCAG	NA	NA	NA	NA	NA	NA	NA	NA	106668157	106667461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_106667500_106668200
ONT_simulated_read_4347652	chr19	+	402	1	ISM	ENSMUSG00000034445.9	ENSMUST00000237814.2	3130	8	11642	614	11323	-607	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCTCCCAAGAACACATG	NA	NA	NA	NA	NA	NA	NA	NA	10566177	10566579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_10566200_10566600
ONT_simulated_read_4349308	chr18	-	801	1	ISM	ENSMUSG00000033032.16	ENST00000296721.9	3479	18	27463	370	27463	-205	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAGACTATTAAGGAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	61864337	61863536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_61863500_61864300
ONT_simulated_read_435059	chr6	+	1091	6	ISM	ENSMUSG00000033706.14	ENSMUST00000045693.8	2486	13	9751	675	9751	-675	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTTTAGAACAACACTGCAA	NA	NA	NA	NA	NA	NA	NA	NA	85418721	85422742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_85418791_85419092_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
ONT_simulated_read_4352098	chr4	+	394	5	ISM	ENSMUSG00000029068.17	ENSMUST00000030944.11	2442	11	289	6565	289	-6565	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGCATGGTGAGTTGATT	NA	NA	NA	NA	NA	NA	NA	NA	155897234	155902435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379
ONT_simulated_read_4354546	chr15	-	670	1	FSM	ENSMUSG00000115437.2	ENSMUST00000228508.2	1042	1	0	372	0	-372	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATCAGCAGCTGTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	38276685	38276015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_38276000_38276700
ONT_simulated_read_4355348	chr5	-	1351	7	ISM	ENSMUSG00000029475.18	ENSMUST00000031435.14	3532	12	11622	9683	11622	-8646	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGATGGAGCGTCACGTG	NA	NA	NA	NA	NA	NA	NA	NA	123026796	123018413	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592
ONT_simulated_read_4361870	chr6	-	297	1	ISM	ENSMUSG00000030246.13	ENSMUST00000239395.2	1304	8	17357	55	17343	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGATGTTTGCACTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	142436326	142436029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_142436000_142436300
ONT_simulated_read_436411	chr8	-	1010	1	ISM	ENSMUSG00000001300.17	ENSMUST00000001319.15	4793	5	40288	2511	40288	-2511	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTGGCTGCCACGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	8670954	8669944	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_8669900_8671000
ONT_simulated_read_4364294	chr2	-	1403	1	ISM	ENSMUSG00000038400.16	ENSMUST00000036248.13	4538	4	48192	2481	48192	-2481	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGTCGTCCCTCTGGGTT	NA	NA	NA	NA	NA	NA	NA	NA	173070134	173068731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_173068700_173070100
ONT_simulated_read_4365366	chr1	-	611	6	ISM	ENSMUSG00000025909.17	ENST00000643740.1	1756	14	126106	84955	126094	-3014	internal_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCACCTTTCTTGAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	8748073	8518235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_8518357_8653428_8653559_8665635_8665767_8677293_8677377_8695002_8695106_8748030
ONT_simulated_read_4365442	chr6	-	1025	4	ISM	ENSMUSG00000029859.7	ENSMUST00000204357.2	2948	16	5400	6222	5400	-6222	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCCCGGCTGCTTCCGGG	NA	NA	NA	NA	NA	NA	NA	NA	42344802	42341871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_42342055_42342352_42342509_42342709_42343113_42344519
ONT_simulated_read_4368610	chr6	-	1096	10	ISM	ENSMUSG00000029701.16	ENSMUST00000007993.16	4465	19	7885	8079	7885	-8079	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCCAGAGATCTTTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	29157120	29131653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_29131776_29135406_29135566_29137577_29137643_29138501_29138638_29139551_29139626_29143552_29143663_29152280_29152354_29154752_29154893_29155025_29155189_29157066
ONT_simulated_read_4375327	chr5	-	1294	11	ISM	ENSMUSG00000042216.14	ENST00000400359.4	3573	24	3224	28801	3224	333	internal_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGCCAGCATCTGGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	113433543	113421484	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_113421591_113422157_113422223_113423899_113424039_113425374_113425540_113426998_113427132_113427322_113427487_113428192_113428261_113430457_113430583_113432845_113432978_113433144_113433291_113433492
ONT_simulated_read_4376451	chr8	+	838	7	ISM	ENSMUSG00000031585.14	ENSMUST00000170705.8	1634	8	0	1189	0	-1189	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTCAATGGATGAGGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	34221860	34266003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_34222017_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971
ONT_simulated_read_4377043	chr1	-	1680	1	ISM	ENSMUSG00000055067.16	ENSMUST00000128302.8	6871	12	560498	3897	560469	-3897	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTCCCAGCTTGATC	NA	NA	NA	NA	NA	NA	NA	NA	178785101	178783421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_178783400_178785100
ONT_simulated_read_4377083	chr1	+	272	1	Genic_Genomic	ENSMUSG00000103711.2_ENSMUSG00000026641.14	novel	NA	NA	NA	NA	-161	1	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCCCCTGGATGTGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	171246439	171246711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr1_+_171246400_171246700
ONT_simulated_read_437774	chr2	-	771	1	ISM	ENSMUSG00000074813.15	ENSMUST00000239198.2	3309	3	128899	1531	32849	432	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCCATGGCTCTATT	NA	NA	NA	NA	NA	NA	NA	NA	128142884	128142113	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_128142100_128142900
ONT_simulated_read_4378300	chr2	-	1867	15	NNC	ENSMUSG00000027620.17	novel	2369	16	NA	NA	349	-217	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGCAGTTACAATTCAC	NA	NA	NA	NA	NA	NA	NA	NA	156021151	155989671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009509_156014747_156014943_156019255_156019306_156021096
ONT_simulated_read_4379530	chr7	+	1301	2	ISM	ENSMUSG00000059070.17	ENSMUST00000210640.2	2989	7	0	3774	0	-3761	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAAGCAGGAAGAGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	45364880	45366486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_45365267_45365571
ONT_simulated_read_4379929	chr7	+	204	3	ISM	ENSMUSG00000074218.4	ENSMUST00000098594.4	393	4	50	691	0	-691	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGACGCTGACTCTGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	29883618	29884764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_29883671_29884509_29884597_29884699
ONT_simulated_read_4382567	chr5	-	1347	1	ISM	ENSMUSG00000040351.12	ENSMUST00000043551.11	6426	20	109449	2130	109449	-1713	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGCACCCTGGGGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	3743476	3742129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_3742100_3743500
ONT_simulated_read_438266	chr12	+	758	1	ISM	ENSMUSG00000021040.16	ENSMUST00000161023.8	2701	4	6797	756	6781	-756	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGTAGAGAAAGTAGGGT	NA	NA	NA	NA	NA	NA	NA	NA	87497462	87498220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_87497500_87498200
ONT_simulated_read_438301	chr6	+	1305	7	ISM	ENSMUSG00000030330.16	ENSMUST00000032480.14	1629	8	4118	262	4093	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTTTATTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	125020916	125025965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_125020989_125023866_125024034_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
ONT_simulated_read_4384461	chr17	-	1160	9	ISM	ENSMUSG00000002625.11	ENSMUST00000236503.2	1987	15	12080	11409	11986	-11407	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGACCAAGATCTGACCC	NA	NA	NA	NA	NA	NA	NA	NA	32557489	32551807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557329_32557430
ONT_simulated_read_4385769	chr4	-	523	6	FSM	ENSMUSG00000028798.17	ENST00000679290.1	545	6	22	0	22	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGGTCTCCATCCACAA	NA	NA	NA	NA	NA	NA	NA	NA	129494273	129485844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129494201
ONT_simulated_read_4386788	chr16	+	374	2	ISM	ENSMUSG00000022665.16	ENSMUST00000099498.10	4083	9	0	33933	0	-33780	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACCAAGGACCGGCACAC	NA	NA	NA	NA	NA	NA	NA	NA	44913974	44914507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_44914233_44914391
ONT_simulated_read_4398297	chr19	+	423	4	ISM	ENSMUSG00000010097.16	ENST00000531709.6	4045	20	11516	193	11485	-182	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	169	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCATCCTCCTCACCTAC	NA	NA	NA	NA	NA	NA	NA	NA	8745998	8748089	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_8746026_8746364_8746548_8747623_8747685_8747937
ONT_simulated_read_4398844	chr5	+	646	6	ISM	ENSMUSG00000039782.16	ENST00000442003.6	6660	11	1481	12144	1481	-8610	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTCCGGATATTGATGAA	NA	NA	NA	NA	NA	NA	NA	NA	43392392	43434923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_43392432_43394649_43394941_43401928_43402020_43419076_43419128_43426211_43426236_43434773
ONT_simulated_read_4401562	chr9	+	787	4	ISM	ENSMUSG00000006673.15	ENST00000357496.6	3067	11	56	26051	-4	-11195	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGGGGGCCAGCAAATTC	NA	NA	NA	NA	NA	NA	NA	NA	108394350	108411093	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108394440_108395965_108396026_108405787_108406118_108410785
ONT_simulated_read_4401966	chr2	-	683	1	ISM	ENSMUSG00000026922.14	ENSMUST00000028286.12	1489	6	10593	0	10503	0	mono-exon	FALSE	NA	NA	NA	NA	NA	207	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	26483751	26483068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_26483100_26483800
ONT_simulated_read_4404452	chrX	-	193	1	NIC	ENSMUSG00000067369.13	novel	3119	13	NA	NA	4664	-169	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATAAAGAAGGCTGACTG	NA	NA	NA	NA	NA	NA	NA	NA	133163598	133163405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_133163400_133163600
ONT_simulated_read_4405984	chr4	+	578	5	ISM	ENSMUSG00000023286.17	ENSMUST00000118192.8	922	6	-142	2006	0	-1807	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGTGTGGTAGCGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	156028306	156040017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_156028471_156033463_156033595_156035928_156035970_156039690_156039794_156039878
ONT_simulated_read_4407747	chr15	-	135	3	ISM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	7739	24710	-3902	-22929	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACCAGACACTGATGCCC	NA	NA	NA	NA	NA	NA	NA	NA	81276505	81272579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81272602_81273851_81273925_81276465
ONT_simulated_read_4408377	chr7	+	382	1	FSM	ENSMUSG00000074092.6	ENSMUST00000117187.2	264	1	0	-118	0	118	mono-exon	FALSE	NA	NA	NA	NA	NA	270	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGCTGTCTTATTGGTC	NA	NA	NA	NA	NA	NA	NA	NA	52405212	52405594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_52405200_52405600
ONT_simulated_read_4408732	chr11	+	481	1	ISM	ENSMUSG00000004018.10	ENSMUST00000004120.9	2724	14	0	85261	0	-84806	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATTTCTAAGTTACCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	26336134	26336615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_26336100_26336600
ONT_simulated_read_4408838	chr9	-	254	2	ISM	ENSMUSG00000032786.17	ENSMUST00000074082.13	2129	11	12305	181	12179	-181	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAGTGATGAGCGAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	106112750	106111306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_106111397_106112586
ONT_simulated_read_4409446	chr15	-	1564	9	ISM	ENSMUSG00000022443.18	ENST00000216181.11	7372	40	68078	6861	39192	-6861	internal_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTGCCGGGCTCTCGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	77658239	77651648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_77651864_77652991_77653241_77653400_77653554_77653704_77653810_77653966_77654174_77655324_77655470_77656023_77656237_77657471_77657644_77658134
ONT_simulated_read_4410542	chr14	-	799	3	ISM	ENSMUSG00000002320.16	ENSMUST00000122358.8	2517	6	159	5453	159	-5358	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTATATTTGCCAATGT	NA	NA	NA	NA	NA	NA	NA	NA	55881104	55878874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55879046_55880050_55880413_55880838
ONT_simulated_read_4415673	chr14	-	175	1	ISM	ENSMUSG00000021811.8	ENSMUST00000022345.7	1631	5	721	3377	721	-3377	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTACAGCGCCTTCGTCA	NA	NA	NA	NA	NA	NA	NA	NA	20438257	20438082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20438100_20438300
ONT_simulated_read_4417279	chr4	-	866	1	ISM	ENSMUSG00000093594.2	ENSMUST00000176201.2	2516	4	25367	1289	25367	-1289	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGAGTTCTAGGACAGC	NA	NA	NA	NA	NA	NA	NA	NA	147868930	147868064	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_147868100_147868900
ONT_simulated_read_4418247	chr2	-	1473	1	NIC	ENSMUSG00000026740.13	novel	5070	13	NA	NA	175504	-2086	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGCACTCTGGCTTCAGC	NA	NA	NA	NA	NA	NA	NA	NA	18222118	18220645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_18220600_18222100
ONT_simulated_read_4418453	chr8	-	559	1	ISM	ENSMUSG00000006517.6	ENSMUST00000006692.6	1756	10	9263	0	9263	0	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGTGTGGGCTGTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	123160898	123160339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123160300_123160900
ONT_simulated_read_4418916	chr12	-	352	1	ISM	ENSMUSG00000113585.2	ENSMUST00000221514.2	1084	4	9210	2132	7113	171	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGCCGAGACTGGCAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	110443428	110443076	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_110443100_110443400
ONT_simulated_read_4418932	chr11	-	1927	14	ISM	ENSMUSG00000006920.15	ENSMUST00000100417.3	3636	15	7705	1679	-1355	-1679	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAAAACTTCATTATTT	NA	NA	NA	NA	NA	NA	NA	NA	101109547	101089893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108195_101109479
ONT_simulated_read_4420497	chr5	-	407	1	ISM	ENSMUSG00000041740.17	ENSMUST00000112097.8	3476	17	6	31074	0	-30707	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACGCCATGAGCCTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	115410951	115410544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_115410500_115411000
ONT_simulated_read_4422341	chr12	+	389	5	ISM	ENSMUSG00000021243.15	ENSMUST00000021669.15	749	8	0	3878	0	-3866	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAATTGAGAAATTGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	85017670	85026199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_85017740_85017988_85018057_85019763_85019836_85020864_85021014_85026168
ONT_simulated_read_4423205	chr2	+	1329	11	ISM	ENSMUSG00000042359.19	ENST00000409631.5	2995	22	24371	11036	24371	-11036	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAGCCCCTCAACACCCT	NA	NA	NA	NA	NA	NA	NA	NA	76378683	76415514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76386233_76386327_76395127_76395294_76398452_76398587_76409516_76409655_76414804_76414893_76415359
ONT_simulated_read_4424878	chr1	+	922	6	ISM	ENSMUSG00000026172.13	ENSMUST00000113733.10	1488	8	85	1055	0	-1055	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGTGCTCCTGGAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	74627532	74630228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_74627553_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118
ONT_simulated_read_4425439	chr8	-	1255	1	FSM	ENSMUSG00000074171.3	ENSMUST00000209493.2	1885	1	1	629	1	-629	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGCCAAAGTAGGGCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	91635043	91633788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_91633800_91635000
ONT_simulated_read_4426158	chr2	+	536	4	ISM	ENSMUSG00000027430.13	ENSMUST00000028917.7	1350	6	0	132987	0	-132987	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTACATGCAGGTGCACAT	NA	NA	NA	NA	NA	NA	NA	NA	144441816	144477691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_144442012_144445707_144445799_144459111_144459348_144477677
ONT_simulated_read_4426479	chr3	+	617	4	ISM	ENSMUSG00000032952.12	ENSMUST00000047285.7	2799	10	236	8699	28	-8435	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGGTCTCTAGAGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	103717179	103720642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_103717374_103719400_103719626_103720092_103720224_103720575
ONT_simulated_read_4426598	chr9	-	714	5	ISM	ENSMUSG00000035934.17	ENSMUST00000039674.13	3632	13	160135	32603	96037	-32600	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACACACAGGGACGGGC	NA	NA	NA	NA	NA	NA	NA	NA	36898568	36834880	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_36835069_36847616_36847789_36865988_36866129_36879673_36879783_36898463
ONT_simulated_read_4426654	chr17	+	380	4	ISM	ENSMUSG00000062691.11	ENSMUST00000063817.7	753	5	0	506	0	-506	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAGAAAGATGAGGAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	79223945	79227229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_79224123_79225785_79225902_79226484_79226530_79227187
ONT_simulated_read_442787	chr13	-	1943	3	ISM	ENSMUSG00000009470.18	ENST00000680533.1	8563	23	77222	3995	41539	3583	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTTTCAATGCTGCATA	NA	NA	NA	NA	NA	NA	NA	NA	98985763	98979361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_98981129_98983835_98983911_98985662
ONT_simulated_read_4428935	chr12	-	1478	1	ISM	ENSMUSG00000049792.7	ENSMUST00000054636.7	2139	2	1876	416	1546	0	mono-exon	FALSE	NA	NA	NA	NA	NA	704	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTTGATGTTGCAAACGA	NA	NA	NA	NA	NA	NA	NA	NA	111677815	111676337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_111676300_111677800
ONT_simulated_read_4428975	chr5	-	557	5	ISM	ENSMUSG00000001847.15	ENSMUST00000100489.4	2325	7	13207	1465	13207	-1465	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGAACCTTTGTACGCTT	NA	NA	NA	NA	NA	NA	NA	NA	143500541	143492701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_143492861_143493081_143493242_143493850_143493914_143495351_143495409_143500423
ONT_simulated_read_4430182	chr5	+	2176	15	ISM	ENSMUSG00000036817.15	ENSMUST00000078690.13	2608	22	30424	-312	19077	218	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGATGTCAAGAAGGCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	139216858	139234616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ONT_simulated_read_4431239	chr7	+	2130	8	ISM	ENSMUSG00000005686.18	ENST00000444303.6	2541	13	24687	-574	24687	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTGAACTTTAGCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	110401687	110411126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_110401771_110402287_110402452_110402933_110403061_110404031_110404196_110405170_110405292_110406986_110407161_110409002_110409114_110409940
ONT_simulated_read_4431833	chr2	+	1003	11	ISM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	574	64	513	-64	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	179	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTACCCATATCCTCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	155850538	155860135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
ONT_simulated_read_4433322	chr12	+	2585	9	ISM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	0	6329	0	-6329	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAAATACGGGAGAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	72583156	72620564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_72583314_72588148_72588892_72602210_72602391_72602617_72603133_72603356_72603458_72603574_72603695_72613670_72614035_72616491_72616596_72620263
ONT_simulated_read_4436120	chr11	-	671	6	ISM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	471	379	471	-379	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGGGAGCGCGGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	117716447	117706730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716426
ONT_simulated_read_4436695	chr8	-	851	4	ISM	ENSMUSG00000031972.6	ENST00000366683.4	1304	6	251	454	251	-454	internal_fragment	FALSE	canonical	NA	NA	NA	NA	3449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGATGACGTGCCTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	124620200	124618968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_124619150_124619282_124619475_124619571_124619734_124619884
ONT_simulated_read_4439401	chr7	+	1768	15	FSM	ENSMUSG00000001829.18	ENST00000340729.9	2059	15	22	269	3	-269	multi-exon	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGAGCAGGACCTGCTAC	NA	NA	NA	NA	NA	NA	NA	NA	101312982	101436746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_101313421_101316454_101316507_101355689_101355794_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434692_101435306_101435381_101435493_101435614_101435852_101435958_101436711
ONT_simulated_read_4440053	chr4	-	2144	3	ISM	ENSMUSG00000041153.10	ENSMUST00000037198.10	2658	6	8360	0	8360	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTGTGCCCTTTCCCATT	NA	NA	NA	NA	NA	NA	NA	NA	16005528	15997120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_15999001_16001929_16002022_16005356
ONT_simulated_read_4440583	chr3	+	1249	7	ISM	ENSMUSG00000027966.21	ENST00000353414.8	7086	66	22	123212	22	-121777	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGATCTCCTGGTAGAT	NA	NA	NA	NA	NA	NA	NA	NA	113824282	113890763	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_113824653_113849243_113849412_113855012_113855227_113860060_113860224_113883780_113883907_113888849_113888943_113890648
ONT_simulated_read_4441772	chr17	-	1204	1	ISM	ENSMUSG00000023973.14	ENSMUST00000059844.13	1908	6	15306	0	15287	0	mono-exon	FALSE	NA	NA	NA	NA	NA	461	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCAAAGGGGTTTTGACC	NA	NA	NA	NA	NA	NA	NA	NA	47047834	47046630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_47046600_47047800
ONT_simulated_read_4442374	chr3	+	1717	3	ISM	ENSMUSG00000057123.15	ENSMUST00000199597.2	3668	4	0	25914	0	-2132	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCAGACGCTCTGGCCACT	NA	NA	NA	NA	NA	NA	NA	NA	96812008	96958818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_96812706_96879389_96879503_96957911
ONT_simulated_read_444245	chr8	-	5802	4	ISM	ENSMUSG00000037234.18	ENSMUST00000037182.14	12836	22	81109	5079	81109	-5079	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTAACACAATATTTTACT	NA	NA	NA	NA	NA	NA	NA	NA	26528143	26516527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26522059_26524958_26525031_26525160_26525266_26528049
ONT_simulated_read_4443678	chr2	-	769	6	ISM	ENSMUSG00000002107.19	ENST00000631816.1	1803	14	298849	161	135546	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGGCGTCTCAAAAACAG	NA	NA	NA	NA	NA	NA	NA	NA	6590878	6550445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_6550487_6551852_6552025_6554642_6554787_6558595_6558794_6565481_6565602_6590784
ONT_simulated_read_4443740	chr14	-	449	1	ISM	ENSMUSG00000033004.17	ENSMUST00000159855.8	15233	85	232582	359	232561	-358	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATCACTGTTTATTGTA	NA	NA	NA	NA	NA	NA	NA	NA	103351654	103351205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_103351200_103351700
ONT_simulated_read_4447755	chr14	-	803	7	ISM	ENSMUSG00000021948.18	ENSMUST00000112202.8	2005	15	5431	372	5431	-372	internal_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATCAACTGGTCCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	30324348	30320735	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270
ONT_simulated_read_4447894	chr9	-	3533	18	FSM	ENSMUSG00000031996.18	ENST00000650012.1	3633	18	-28	128	0	-128	multi-exon	FALSE	canonical	NA	NA	NA	NA	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCCCCCTTGGCCCTAGC	NA	NA	NA	NA	NA	NA	NA	NA	31123083	31060985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31067485_31067522_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
ONT_simulated_read_4448605	chr7	-	1102	1	FSM	ENSMUSG00000044786.7	ENSMUST00000209061.2	2465	1	804	559	-35	-559	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAAGATGTTTGAGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	28077876	28076774	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_28076800_28077900
ONT_simulated_read_4448965	chr16	-	609	1	NIC	ENSMUSG00000048490.15	novel	7868	4	NA	NA	78033	-3546	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCTTCCGAGGACTGGA	NA	NA	NA	NA	NA	NA	NA	NA	76091904	76091295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_76091300_76091900
ONT_simulated_read_4449296	chr5	+	398	1	Antisense	novelGene_ENSMUSG00000029463.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGCGGAGCGTAATTCGCG	NA	NA	NA	NA	NA	NA	NA	NA	122509938	122510336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr5_+_122509900_122510300
ONT_simulated_read_445039	chr2	+	777	3	ISM	ENSMUSG00000017861.12	ENST00000217026.5	2604	14	13549	8855	13525	-8855	internal_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCACGCCTGTCAAAACC	NA	NA	NA	NA	NA	NA	NA	NA	162910131	162916683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_162910236_162914543_162914835_162916301
ONT_simulated_read_4451084	chr3	-	140	1	ISM	ENSMUSG00000048997.18	ENST00000459635.2	2540	11	8159	0	8101	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGTCTCCCTGTTCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	108109677	108109537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_108109500_108109700
ONT_simulated_read_4451287	chr5	+	1426	11	ISM	ENSMUSG00000029482.5	ENSMUST00000031445.5	3239	18	30335	883	30335	-883	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCGGAGACCCTAAGCAT	NA	NA	NA	NA	NA	NA	NA	NA	125583212	125593591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_125583361_125585740_125585822_125586842_125586968_125588703_125588769_125588909_125589033_125589688_125589803_125590165_125590292_125590982_125591053_125591232_125591292_125591991_125592195_125593279
ONT_simulated_read_4457889	chr12	+	923	11	ISM	ENSMUSG00000061458.10	ENSMUST00000046011.12	3021	21	0	60559	0	-59698	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTTCATTTCCAGGATT	NA	NA	NA	NA	NA	NA	NA	NA	17398458	17419537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466
ONT_simulated_read_4458834	chr16	+	1321	8	ISM	ENSMUSG00000002845.15	ENSMUST00000002924.15	2871	9	1377	1157	1377	-185	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGTGGAACCACACGCTC	NA	NA	NA	NA	NA	NA	NA	NA	38384550	38411367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
ONT_simulated_read_4459393	chr16	-	725	7	ISM	ENSMUSG00000022749.9	ENST00000475134.1	1874	17	20044	12568	20044	-12568	internal_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCGTTAGGGAAAAGGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	57018747	57003269	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_57003354_57004742_57004850_57007000_57007044_57009624_57009796_57011836_57011930_57012971_57013095_57018643
ONT_simulated_read_446020	chr3	-	1357	5	ISM	ENSMUSG00000027860.16	ENST00000355485.7	2528	8	12343	1161	12343	-63	internal_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTAAAATTTCTATAC	NA	NA	NA	NA	NA	NA	NA	NA	102091869	102065561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_102065814_102070614_102070850_102072670_102072804_102074153_102074288_102091266
ONT_simulated_read_4461389	chr2	-	311	1	Genic_Genomic	ENSMUSG00000082740.2	novel	NA	NA	NA	NA	312	4	mono-exon	FALSE	NA	NA	NA	NA	NA	2050	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAATTATCTGAGGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	150311583	150311272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr2_-_150311300_150311600
ONT_simulated_read_446196	chr7	-	908	1	NIC	ENSMUSG00000045114.11	novel	2501	4	NA	NA	1626	-97	mono-exon	FALSE	NA	NA	NA	NA	NA	418	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCTGCAGGGAGCAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	126617903	126616995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_126617000_126617900
ONT_simulated_read_4465838	chr1	+	478	3	ISM	ENSMUSG00000026269.15	ENSMUST00000027487.15	3337	11	426	4966	426	-4966	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTACCACTTCCACATGG	NA	NA	NA	NA	NA	NA	NA	NA	92838930	92843597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_92839206_92842780_92842922_92843535
ONT_simulated_read_4465898	chr1	-	2514	9	ISM	ENSMUSG00000089872.11	ENST00000543470.5	3304	15	26359	9002	26359	-9002	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTACTTTGAACATGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	190617607	190514789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_190514828_190515760_190515844_190530848_190530939_190531209_190532779_190541079_190541213_190542270_190542319_190576683_190576800_190603788_190604149_190617530
ONT_simulated_read_4466467	chr5	-	413	3	ISM	ENSMUSG00000037379.8	ENSMUST00000046186.8	2045	6	1930	681	1930	-681	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGACTGTGTGGAGGACCA	NA	NA	NA	NA	NA	NA	NA	NA	33373869	33371951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_33371997_33372892_33373068_33373676
ONT_simulated_read_4468028	chr10	-	1775	11	ISM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	1270	374	1270	-358	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCCAAGTGCTGGGGTT	NA	NA	NA	NA	NA	NA	NA	NA	127356985	127353365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786
ONT_simulated_read_4469248	chr6	-	2674	17	ISM	ENSMUSG00000051586.18	ENSMUST00000077159.8	2875	18	39275	0	-56	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTATTTGTCCTTTAGTG	NA	NA	NA	NA	NA	NA	NA	NA	121019276	120984200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_120984391_120985955_120986143_120998143_120998318_120999186_120999250_120999344_120999458_121001599_121001797_121003926_121004075_121006607_121006705_121007957_121008085_121010658_121010775_121010990_121011249_121013433_121013535_121014404_121014561_121014970_121015073_121015447_121015565_121017342_121017551_121018956
ONT_simulated_read_4469321	chr7	-	930	7	ISM	ENSMUSG00000002602.17	ENSMUST00000085948.11	3899	19	22136	1128	22118	-1128	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGCTATGTCCTTTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	25465994	25458182	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_25458439_25460175_25460313_25460829_25460990_25462708_25462819_25463367_25463490_25463846_25463940_25465942
ONT_simulated_read_4470561	chr1	-	635	5	ISM	ENSMUSG00000042305.13	ENSMUST00000049470.11	3149	8	6269	2032	6160	-116	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCGTGGTGGTCAGAATCT	NA	NA	NA	NA	NA	NA	NA	NA	134283448	134275866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134282580_134283297
ONT_simulated_read_4471002	chr4	+	539	5	ISM	ENSMUSG00000028383.18	ENSMUST00000030078.12	2611	11	82	21797	0	-21796	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAAAGTAGGTCATATTC	NA	NA	NA	NA	NA	NA	NA	NA	59581644	59596892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_59581776_59592154_59592319_59593236_59593336_59594395_59594511_59596862
ONT_simulated_read_4474159	chr5	+	290	4	ISM	ENSMUSG00000056076.14	ENSMUST00000100507.8	2945	19	20665	1210	20665	-1210	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAGGACTTCCGGCAATA	NA	NA	NA	NA	NA	NA	NA	NA	140425747	140427905	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_140425807_140426740_140426867_140427491_140427570_140427878
ONT_simulated_read_4474694	chr8	+	1032	1	FSM	ENSMUSG00000071076.9	ENSMUST00000095267.8	1667	1	542	93	542	-93	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTGGTTTTGTTTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	71152140	71153172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71152100_71153200
ONT_simulated_read_4476332	chr7	+	865	5	ISM	ENSMUSG00000058454.16	ENSMUST00000073878.12	2815	9	0	7928	0	-7176	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGTGGGAGGCGTCCAA	NA	NA	NA	NA	NA	NA	NA	NA	143376903	143394218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_143377278_143383875_143384003_143390374_143390467_143391498_143391722_143394169
ONT_simulated_read_4476889	chr3	+	854	9	ISM	ENSMUSG00000028013.17	ENSMUST00000029644.16	1226	12	12	7631	0	-7429	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGGAGCCATCAGTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	133015882	133076208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_133016043_133026696_133026762_133028332_133028378_133032408_133032463_133036153_133036274_133045023_133045111_133053824_133053952_133073583_133073712_133076140
ONT_simulated_read_4479892	chr11	-	1378	10	ISM	ENSMUSG00000025572.19	ENSMUST00000026659.10	2865	20	1590	7058	-8	-379	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTCCTTAACCTGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	117669875	117663871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758
ONT_simulated_read_4480184	chr1	-	763	1	ISM	ENSMUSG00000026313.17	ENSMUST00000097644.9	8100	27	246973	3827	215025	151	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACAATGCCTTAAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	91861090	91860327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_91860300_91861100
ONT_simulated_read_4481409	chrX	-	862	4	ISM	ENSMUSG00000016534.16	ENSMUST00000016678.14	1769	9	25414	0	25414	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	284	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTGTTTCAATTTGTAA	NA	NA	NA	NA	NA	NA	NA	NA	37519917	37493938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_37494449_37513143_37513309_37514239_37514304_37519794
ONT_simulated_read_4481793	chr9	-	266	2	ISM	ENSMUSG00000032786.17	ENSMUST00000074082.13	2129	11	9640	2658	9514	-2658	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGAGTCTGTGCGGATCC	NA	NA	NA	NA	NA	NA	NA	NA	106115415	106113783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_106113908_106115273
ONT_simulated_read_4485692	chr19	+	1085	6	ISM	ENSMUSG00000024740.11	ENST00000679588.1	4132	27	20792	322	20792	184	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGATACCTCACACTC	NA	NA	NA	NA	NA	NA	NA	NA	10603966	10606860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
ONT_simulated_read_4486337	chr13	+	879	5	ISM	ENSMUSG00000093930.3	ENSMUST00000179869.3	3245	10	16	5470	-2	-5470	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCTAGCTCGGATGTTC	NA	NA	NA	NA	NA	NA	NA	NA	120151997	120164148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611_120162777_120164070
ONT_simulated_read_4486346	chr4	+	1195	11	ISM	ENSMUSG00000028274.18	ENSMUST00000108153.9	4157	16	20703	2197	20703	-2197	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAAAAATGCTGTTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	33331013	33500417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879_33362952_33368572_33368738_33379368_33379438_33404152_33404254_33443600_33443668_33498950_33499075_33500237
ONT_simulated_read_4486951	chr2	-	1395	1	Genic_Genomic	ENSMUSG00000039983.14	novel	NA	NA	NA	NA	8225	12	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTTCTGATTTTCTTATT	NA	NA	NA	NA	NA	NA	NA	NA	118849642	118848247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr2_-_118848200_118849600
ONT_simulated_read_4490018	chr7	-	740	4	ISM	ENSMUSG00000070426.13	ENST00000533380.5	846	5	25464	16	20784	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGGAATTGTCCCCCATTC	NA	NA	NA	NA	NA	NA	NA	NA	101688899	101669338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_101669700_101672518_101672621_101673219_101673354_101688756
ONT_simulated_read_4490634	chr8	-	470	1	ISM	ENSMUSG00000002910.12	ENSMUST00000002989.11	2355	8	3754	368	3062	-368	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACATGGCCTCACTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	71288610	71288140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71288100_71288600
ONT_simulated_read_4493192	chr5	+	1228	7	ISM	ENSMUSG00000029130.13	ENSMUST00000168460.8	1107	8	665	-233	665	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAGCTAGTGTCTGACC	NA	NA	NA	NA	NA	NA	NA	NA	29403668	29430522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_29403837_29408052_29408196_29410666_29410700_29411171_29411297_29411693_29411803_29429114_29429283_29430040
ONT_simulated_read_449399	chr4	-	1554	1	ISM	ENSMUSG00000028438.17	ENSMUST00000108055.9	5593	13	69222	3320	69222	-2454	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGCTATGGTTTCATGG	NA	NA	NA	NA	NA	NA	NA	NA	41395618	41394064	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_41394100_41395600
ONT_simulated_read_4494427	chr14	+	850	5	FSM	ENSMUSG00000060126.15	ENST00000379055.5	823	5	-24	-3	-24	3	multi-exon	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGACTGATGTCATCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	76082771	76085615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
ONT_simulated_read_4499067	chr14	-	1232	1	FSM	ENSMUSG00000115801.2	ENSMUST00000226445.2	93147	1	77190	14725	77190	-14725	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGCTATGACGGATTGGA	NA	NA	NA	NA	NA	NA	NA	NA	44797468	44796236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_44796200_44797500
ONT_simulated_read_449929	chr1	-	793	7	ISM	ENSMUSG00000038079.15	ENSMUST00000087475.11	1823	13	9700	5036	9700	-4722	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATCATAGTGAATCTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	59149265	59144791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146
ONT_simulated_read_4500166	chr8	-	1121	6	ISM	ENSMUSG00000000743.10	ENSMUST00000000759.9	2140	7	2513	936	-11	-936	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCCATCTTCCCAGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	123936986	123931938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123932486_123932882_123933071_123934211_123934341_123934702_123934850_123935759_123935838_123936954
ONT_simulated_read_4503009	chr11	-	3369	1	ISM	ENSMUSG00000020362.14	ENSMUST00000145353.8	5736	12	37359	493	37346	-493	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACAGTCTTCTGATGAGT	NA	NA	NA	NA	NA	NA	NA	NA	49566191	49562822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_49562800_49566200
ONT_simulated_read_4503385	chr19	-	1244	5	NIC	ENSMUSG00000024901.16	novel	4110	7	NA	NA	28	-427	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	643	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGGGAGCTCTGCATGTG	NA	NA	NA	NA	NA	NA	NA	NA	4991913	4982263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_4982896_4984394_4984584_4984930_4985126_4986145_4986248_4991787
ONT_simulated_read_4504544	chr3	+	327	1	ISM	ENSMUSG00000078578.10	ENSMUST00000197539.5	2515	7	74	27136	0	-25719	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGCCCCGCCCTGCCGGG	NA	NA	NA	NA	NA	NA	NA	NA	135144971	135145298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_135145000_135145300
ONT_simulated_read_4505150	chr6	-	1874	1	ISM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	23445	114	10127	-92	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTTTTGTACTTTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	148824520	148822646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_148822600_148824500
ONT_simulated_read_4505904	chr2	-	3416	1	ISM	ENSMUSG00000068134.14	ENSMUST00000109931.8	4033	3	18639	218	18603	-218	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTTTGTGCTTTCTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	149959959	149956543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_149956500_149960000
ONT_simulated_read_4506087	chr10	+	424	2	ISM	ENSMUSG00000019848.15	ENSMUST00000161803.2	1369	4	0	3307	0	-3307	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	186	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTATGGAAAAGCTTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	45165497	45190906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_45165672_45190656
ONT_simulated_read_4509060	chr17	+	1157	8	ISM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	0	2789	0	-2278	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACGTCCTCTCCTGGCCGG	NA	NA	NA	NA	NA	NA	NA	NA	13135268	13141165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989
ONT_simulated_read_4510590	chr12	-	1520	1	ISM	ENSMUSG00000014905.5	ENSMUST00000015049.5	2461	3	2937	311	2937	-311	mono-exon	FALSE	NA	NA	NA	NA	NA	201	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTTGGGATGTATAATA	NA	NA	NA	NA	NA	NA	NA	NA	44254172	44252652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_44252700_44254200
ONT_simulated_read_451195	chr10	-	490	2	ISM	ENSMUSG00000061904.13	ENST00000548847.1	1164	6	5553	-22	5481	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCATCTATTCCTGATGT	NA	NA	NA	NA	NA	NA	NA	NA	90954078	90952669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_90952987_90953905
ONT_simulated_read_4513702	chr2	-	741	6	ISM	ENSMUSG00000037110.21	ENST00000202677.12	5729	38	90252	128245	90141	-128245	internal_fragment	TRUE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTTATGGCGAAG	NA	NA	NA	NA	NA	NA	NA	NA	146263678	146230530	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_146230605_146246782_146246960_146248261_146248353_146252092_146252191_146254653_146254789_146263512
ONT_simulated_read_4514114	chrM	+	585	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	372	0	-372	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCTTCGACCTGACAGA	NA	NA	NA	NA	NA	NA	NA	NA	2750	3335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrM_+_2800_3300
ONT_simulated_read_4514753	chr2	+	444	1	ISM	ENSMUSG00000061689.16	ENSMUST00000099145.6	3402	7	0	42428	0	-40968	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCTCTGCCCGGGGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	156563411	156563855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_156563400_156563900
ONT_simulated_read_4515771	chr15	-	349	1	ISM	ENSMUSG00000022205.16	ENSMUST00000022816.15	3372	5	11777	2594	11777	108	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGCCAAAAGAACAACTAG	NA	NA	NA	NA	NA	NA	NA	NA	11984367	11984018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_11984000_11984400
ONT_simulated_read_4516972	chr6	+	1060	9	NIC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	0	-129	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGGGGTCAAGCACAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	124689298	124693661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692994_124693568
ONT_simulated_read_4517690	chrX	-	815	7	ISM	ENSMUSG00000067567.13	ENST00000647886.1	1758	12	6892	22939	6821	-22939	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCACCACCCTCCAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	101541876	101351243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_101351351_101446190_101446286_101449142_101449316_101471720_101471830_101472369_101472448_101476090_101476204_101541736
ONT_simulated_read_4518141	chr2	-	837	7	ISM	ENSMUSG00000025781.15	ENSMUST00000114896.8	1735	10	16132	0	16115	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	NA	NA	NA	NA	NA	NA	NA	NA	10069123	10060840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917
ONT_simulated_read_4518429	chr2	-	318	1	ISM	ENSMUSG00000027224.15	ENSMUST00000110538.8	2467	5	2880	1460	2858	94	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGTATCATGTTCAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	122134449	122134131	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_122134100_122134400
ONT_simulated_read_4518754	chr5	-	344	2	ISM	ENSMUSG00000063015.13	ENSMUST00000058550.15	2804	7	18692	1360	18692	-1360	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGGAGCATTCAAATTAC	NA	NA	NA	NA	NA	NA	NA	NA	93335662	93331151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_93331280_93335446
ONT_simulated_read_4521075	chr4	+	457	4	NNC	ENSMUSG00000028936.16	novel	474	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGTGGTTTATCCTTGCAT	NA	NA	NA	NA	NA	NA	NA	NA	152410323	152416937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_+_152410353_152411937_152412043_152414463_152414586_152416736
ONT_simulated_read_452206	chr1	-	1461	13	ISM	ENSMUSG00000025968.17	ENSMUST00000168099.9	2590	19	5845	7886	22	-7834	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATGGTACAAAAGATTCGA	NA	NA	NA	NA	NA	NA	NA	NA	63210046	63190779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007
ONT_simulated_read_4523507	chr7	+	218	3	ISM	ENSMUSG00000030922.13	ENSMUST00000106518.9	875	4	9	2523	0	-2136	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCACGGCCCGGATTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	119495092	119513433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_119495114_119509026_119509186_119513395
ONT_simulated_read_4524163	chr9	-	1446	11	ISM	ENSMUSG00000032228.17	ENST00000537840.5	1580	12	10779	-4	10762	4	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAAACACTTGAAACCAGA	NA	NA	NA	NA	NA	NA	NA	NA	71792571	71753738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_71753843_71757053_71757208_71763586_71763820_71765765_71765929_71766121_71766237_71775353_71775561_71777355_71777430_71783270_71783350_71789998_71790064_71790388_71790534_71792464
ONT_simulated_read_452574	chr3	-	200	1	Antisense	novelGene_ENSMUSG00000042737.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAACGCTGCGTTAAGATG	NA	NA	NA	NA	NA	NA	NA	NA	89173876	89173676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr3_-_89173700_89173900
ONT_simulated_read_4525838	chr19	+	232	1	FSM	ENSMUSG00000118270.2	ENSMUST00000237894.2	138	1	0	-94	0	94	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGACTCCTATTTGCATT	NA	NA	NA	NA	NA	NA	NA	NA	17670126	17670358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_17670100_17670400
ONT_simulated_read_452677	chr2	-	858	1	ISM	ENSMUSG00000035093.17	ENSMUST00000053699.13	6797	18	41976	3051	41976	-3051	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAATGACTAAAGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	125582814	125581956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_125582000_125582800
ONT_simulated_read_4526873	chr11	+	612	7	ISM	ENSMUSG00000020901.14	ENST00000611902.4	2503	19	43340	9136	1683	-3947	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGGAGATGATGAAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	68366306	68383129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_68366330_68367130_68367200_68368269_68368409_68377376_68377447_68381297_68381473_68382772_68382857_68383077
ONT_simulated_read_4527344	chr18	+	955	3	ISM	ENSMUSG00000000420.16	ENSMUST00000178605.2	3796	12	47398	1329	47398	-1329	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATAGTCATGGATGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	24413051	24418538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_24413100_24415158_24415294_24417766
ONT_simulated_read_4529107	chr1	+	1498	7	ISM	ENSMUSG00000026634.17	ENSMUST00000066632.14	3714	9	0	4104	0	-4104	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCGGAGGTCCCAGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	190660688	190675055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_190660956_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026
ONT_simulated_read_4530068	chr11	+	294	1	FSM	ENSMUSG00000045176.4	ENSMUST00000051888.4	1862	1	727	841	727	-841	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGACATGAGCATTAAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	68951269	68951563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_68951300_68951600
ONT_simulated_read_4530110	chr7	+	1230	6	ISM	ENSMUSG00000035623.15	ENSMUST00000107153.3	11124	16	10	31481	10	-31481	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCCAACTAAAGAAGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	97229113	97310504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_97229313_97266049_97266142_97285583_97285677_97288511_97288718_97302259_97302415_97310019
ONT_simulated_read_4531309	chr10	-	752	5	ISM	ENSMUSG00000020057.3	ENSMUST00000020249.2	2807	7	16412	1704	16263	-312	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAACAAATTCATATGCAA	NA	NA	NA	NA	NA	NA	NA	NA	88176525	88160369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_88160648_88161195_88161289_88164944_88165004_88172672_88172851_88176381
ONT_simulated_read_4534494	chr8	+	739	6	ISM	ENSMUSG00000031636.8	ENST00000629667.2	953	7	1	1468	1	-1468	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAGTGTGGGAGTGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	46338607	46370583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_46338710_46353511_46353597_46362055_46362124_46366733_46366998_46368165_46368297_46370494
ONT_simulated_read_4534498	chr19	+	272	3	ISM	ENSMUSG00000024795.12	ENSMUST00000223907.2	5423	32	13294	38660	13294	-38650	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTGTCCTTAGTGTAAAT	NA	NA	NA	NA	NA	NA	NA	NA	34913085	34914485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_34913138_34914176_34914249_34914337
ONT_simulated_read_453509	chr14	+	1180	11	ISM	ENSMUSG00000025544.14	ENSMUST00000026624.11	3107	17	230	12907	0	-12019	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGAGGAGCCCTGATGACA	NA	NA	NA	NA	NA	NA	NA	NA	122344679	122384109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076
ONT_simulated_read_453689	chr4	+	2694	7	ISM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	1569	310	1127	-310	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGACAGCCAGGCATGTG	NA	NA	NA	NA	NA	NA	NA	NA	40724048	40734654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ONT_simulated_read_4537726	chr4	-	1007	6	ISM	ENSMUSG00000028530.15	ENSMUST00000102781.10	4906	25	83352	19010	83352	-19010	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAGGGCCGCTACAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	101039127	101028573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_101028619_101031282_101031407_101032270_101032429_101034764_101034954_101036651_101036992_101038976
ONT_simulated_read_453973	chr5	+	811	5	ISM	ENSMUSG00000041147.11	ENST00000380152.8	7969	17	21767	289	21767	-289	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCTTGGAGTGGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	150483889	150492504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_150484057_150484149_150484289_150490352_150490595_150491071_150491234_150492403
ONT_simulated_read_4542554	chr16	-	274	1	ISM	ENSMUSG00000022972.11	ENSMUST00000023694.11	1430	7	119	8913	119	-8862	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTTGTGCTGCACGTGA	NA	NA	NA	NA	NA	NA	NA	NA	90731883	90731609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_90731600_90731900
ONT_simulated_read_4542586	chr3	-	1922	1	ISM	ENSMUSG00000038256.16	ENSMUST00000046521.14	6102	10	21410	371	10553	-335	mono-exon	FALSE	NA	NA	NA	NA	NA	364	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTCTTCCCCTTGGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	97113270	97111348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_97111300_97113300
ONT_simulated_read_4544789	chr4	-	331	1	ISM	ENSMUSG00000028599.11	ENSMUST00000030336.11	3818	10	30787	2290	11496	0	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAGACCCTGAACCCATGG	NA	NA	NA	NA	NA	NA	NA	NA	144942653	144942322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_144942300_144942700
ONT_simulated_read_454720	chr11	+	749	1	ISM	ENSMUSG00000020793.6	ENSMUST00000055872.3	1940	2	0	2251	0	-2251	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCGACCTGTGTTTCATC	NA	NA	NA	NA	NA	NA	NA	NA	116171764	116172513	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_116171800_116172500
ONT_simulated_read_4552263	chr7	+	1164	9	ISM	ENSMUSG00000015165.17	ENSMUST00000038572.15	2142	13	4216	249	4216	-232	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTTTGATTTATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	28514530	28521442	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_28514621_28514704_28514778_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
ONT_simulated_read_4552523	chr1	+	818	6	ISM	ENSMUSG00000026201.13	ENSMUST00000027401.11	2876	8	1165	1590	767	-15	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTCTTCCAGGATGGCT	NA	NA	NA	NA	NA	NA	NA	NA	75188646	75190660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
ONT_simulated_read_4553506	chr1	-	420	4	ISM	ENSMUSG00000057363.13	ENST00000283148.12	2033	15	37119	22198	37119	-22198	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGGCAAACGTGTTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	43829805	43810889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_43810963_43813976_43814037_43819224_43819330_43829623
ONT_simulated_read_4554211	chr9	+	1173	10	ISM	ENSMUSG00000032307.17	ENSMUST00000059555.15	3456	13	541	12503	0	-11373	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACAGGTAACTCTTGT	NA	NA	NA	NA	NA	NA	NA	NA	55056678	55102310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_55057111_55070251_55070354_55075486_55075592_55083474_55083532_55087756_55087898_55090385_55090471_55092187_55092249_55092953_55093045_55099125_55099185_55102270
ONT_simulated_read_4554623	chr6	-	1143	9	ISM	ENSMUSG00000041540.17	ENST00000537393.5	2687	15	54191	41219	54191	-40933	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGCCTCTGTCCCGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	144100949	143819754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_143819877_143853112_143853260_143887076_143887163_143906522_143906644_143968894_143968964_143974005_143974179_143986994_143987082_144062169_144062381_144100822
ONT_simulated_read_4556453	chr2	-	3827	10	ISM	ENSMUSG00000043909.17	ENST00000450115.6	6065	27	61358	-1561	61358	1561	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAACATGGCAATCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	121039832	121027172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_121029089_121029456_121029603_121030087_121030288_121030783_121030879_121033023_121033234_121034813_121035030_121035400_121035593_121038179_121038611_121038835_121038986_121039561
ONT_simulated_read_4558854	chr1	-	979	2	ISM	ENSMUSG00000026586.17	ENSMUST00000027878.14	4952	4	55791	2458	55749	-2458	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATCGTTTTTAAACAATT	NA	NA	NA	NA	NA	NA	NA	NA	163085488	163075145	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_163075966_163085329
ONT_simulated_read_4561341	chr7	-	1587	13	ISM	ENSMUSG00000039428.12	ENSMUST00000041968.11	3700	15	34052	1607	34025	-1607	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTATTTCAGGGATACAAA	NA	NA	NA	NA	NA	NA	NA	NA	88953943	88790528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_88791179_88792988_88793057_88793864_88793964_88797177_88797255_88800620_88800685_88803235_88803404_88805634_88805705_88808076_88808224_88814332_88814375_88845320_88845368_88893128_88893195_88929174_88929209_88953888
ONT_simulated_read_4562318	chr9	-	810	3	ISM	ENSMUSG00000032127.10	ENSMUST00000034644.10	3536	16	8939	384	8939	-384	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCCTATAAATAAAAGTATAA	NA	NA	NA	NA	NA	NA	NA	NA	44264028	44259429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44259882_44260199_44260423_44263893
ONT_simulated_read_4564554	chr14	-	589	5	ISM	ENSMUSG00000002329.8	ENSMUST00000002400.7	1733	6	279	974	279	-974	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTTCTTTTTCACAAA	NA	NA	NA	NA	NA	NA	NA	NA	55897686	55896309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897556_55897624
ONT_simulated_read_4565523	chr10	-	509	3	ISM	ENSMUSG00000001665.12	ENSMUST00000001715.10	1880	5	4550	685	4154	120	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGGGAGACAGACGGTCAA	NA	NA	NA	NA	NA	NA	NA	NA	75612698	75610633	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_75610845_75611704_75611882_75612577
ONT_simulated_read_4566539	chr5	-	507	5	ISM	ENSMUSG00000047215.15	ENSMUST00000057885.13	738	8	960	0	521	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	2571	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	65547827	65545706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730
ONT_simulated_read_4567373	chr8	-	996	7	ISM	ENSMUSG00000017765.18	ENST00000541864.6	3585	24	17683	584	17683	-584	internal_fragment	FALSE	canonical	NA	NA	NA	NA	308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACGATGCCCGTCTGGTTT	NA	NA	NA	NA	NA	NA	NA	NA	106673461	106670974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_106671041_106671153_106671339_106671766_106671875_106671971_106672104_106672192_106672363_106672476_106672673_106673322
ONT_simulated_read_4567853	chr11	-	1435	1	ISM	ENSMUSG00000057181.16	ENSMUST00000179332.8	4536	10	14026	2063	14026	-2062	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATAAGAATGCACATGTG	NA	NA	NA	NA	NA	NA	NA	NA	80254815	80253380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_80253400_80254800
ONT_simulated_read_4569340	chr17	-	228	2	ISM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	4413	1794	3639	-56	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCGTTTAAAATTATCAAGTA	NA	NA	NA	NA	NA	NA	NA	NA	47089169	47086626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_47086663_47088977
ONT_simulated_read_4569961	chr10	-	710	4	ISM	ENSMUSG00000064181.7	ENSMUST00000020375.7	2690	10	10909	13080	10909	-12087	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAGGGGGCACACAAG	NA	NA	NA	NA	NA	NA	NA	NA	116775376	116754768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_116754871_116755478_116755557_116773301_116773561_116775105
ONT_simulated_read_4571259	chr9	+	793	7	ISM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	10398	585	10372	-581	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTTGGTGCCATTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	108549694	108561255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
ONT_simulated_read_457352	chr14	+	1141	2	FSM	ENSMUSG00000040770.6	ENST00000329715.2	1291	2	26	124	0	-124	multi-exon	FALSE	canonical	NA	NA	NA	NA	1066	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTTGTTTGTGCATGC	NA	NA	NA	NA	NA	NA	NA	NA	55170151	55173170	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_55170683_55172560
ONT_simulated_read_4573838	chr12	+	909	6	ISM	ENSMUSG00000021007.15	ENSMUST00000048402.12	2052	12	33	11192	-7	-11189	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACCCAAACTGAATTAAG	NA	NA	NA	NA	NA	NA	NA	NA	98594448	98624882	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_98594594_98598221_98598297_98600482_98600579_98603824_98603873_98614607_98614742_98624471
ONT_simulated_read_4573849	chr5	+	547	5	ISM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	76	1698	76	-1698	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCAGCCTTGAGTGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	122510589	122519267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252
ONT_simulated_read_4576400	chr11	+	2179	17	FSM	ENSMUSG00000004043.15	ENST00000590726.7	2211	17	32	0	1	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTAGGTCATGGTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	100751310	100772988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_100751403_100752546_100752704_100753956_100754047_100756156_100756332_100764828_100764960_100765164_100765317_100765748_100765905_100766308_100766489_100767602_100767691_100767767_100767891_100770104_100770198_100770436_100770644_100771102_100771198_100771293_100771425_100771855_100772012_100772563_100772616_100772887
ONT_simulated_read_4577216	chr3	+	1953	8	ISM	ENSMUSG00000040389.16	ENST00000361054.7	3999	14	35784	509	35784	-509	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	93	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGGGAACTTGTTGACT	NA	NA	NA	NA	NA	NA	NA	NA	108534509	108552521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_108534777_108537007_108537084_108540376_108540535_108544306_108544477_108545208_108545380_108545941_108546074_108550377_108550597_108551761
ONT_simulated_read_4578498	chr3	-	498	5	ISM	ENSMUSG00000027933.12	ENSMUST00000196530.2	3778	30	25034	11462	24724	-11462	internal_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAACCACATTGTGGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	90315886	90310844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_90310905_90311291_90311372_90311820_90311909_90313480_90313673_90315808
ONT_simulated_read_4578941	chr16	-	280	1	ISM	ENSMUSG00000022671.14	ENSMUST00000023351.11	1035	3	14618	9	14581	0	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGAGTTCTATGTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	15666593	15666313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_15666300_15666600
ONT_simulated_read_4579282	chr9	-	441	1	ISM	ENSMUSG00000111503.2	ENSMUST00000214628.2	681	2	67543	0	67543	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCCTCTTTGGACCTTA	NA	NA	NA	NA	NA	NA	NA	NA	11517307	11516866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_11516900_11517300
ONT_simulated_read_458098	chr13	-	1991	10	ISM	ENSMUSG00000034928.17	ENST00000274811.9	4111	11	3379	1605	3379	548	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGTCAGACCCATGCTC	NA	NA	NA	NA	NA	NA	NA	NA	54832220	54828829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831964_54832150
ONT_simulated_read_4581838	chr17	-	1421	10	ISM	ENSMUSG00000013236.18	ENSMUST00000086828.10	5608	29	39930	4450	39930	-4448	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCCTTGGTCCCGCCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	56729286	56723880	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728353_56728832_56728845_56729128
ONT_simulated_read_45837	chr11	-	396	2	ISM	ENSMUSG00000057113.14	ENSMUST00000109354.10	1157	10	6973	0	6968	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	130	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGGATGTATGTGACAA	NA	NA	NA	NA	NA	NA	NA	NA	33106104	33104926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_33105221_33106002
ONT_simulated_read_4584708	chr9	+	251	1	NIC	ENSMUSG00000032076.21	novel	4482	10	NA	NA	0	-193055	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTGTGGGCACCCGCGGA	NA	NA	NA	NA	NA	NA	NA	NA	47441554	47441805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_47441600_47441800
ONT_simulated_read_4585574	chr9	+	621	6	ISM	ENSMUSG00000059183.13	ENSMUST00000074792.7	2042	9	1243	5777	1243	-5777	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTAACAATTCCATCCT	NA	NA	NA	NA	NA	NA	NA	NA	65344306	65354559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_65344480_65346811_65346935_65347627_65347731_65348894_65348971_65351160_65351253_65354505
ONT_simulated_read_4585963	chr7	+	1431	12	ISM	ENSMUSG00000030795.19	ENST00000380244.7	1791	16	4388	95	4367	-95	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGCGGTTGTGTGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	127571046	127581106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
ONT_simulated_read_458668	chr15	+	899	9	ISM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	0	8782	0	-8625	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTGGGGCTTCTGCGCC	NA	NA	NA	NA	NA	NA	NA	NA	78959378	78969823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756
ONT_simulated_read_4587145	chr17	+	1432	1	ISM	ENSMUSG00000043311.8	ENST00000375911.2	2347	2	89	1013	51	-987	mono-exon	FALSE	NA	NA	NA	NA	NA	422	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCAGGCCCTGGTGCTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	35345412	35346844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35345400_35346800
ONT_simulated_read_4590039	chr7	+	327	3	ISM	ENSMUSG00000078816.11	ENSMUST00000172109.4	2119	17	1699	19400	1699	-19387	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGCTGTGCCTCCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	3353859	3359483	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_3353943_3359079_3359192_3359351
ONT_simulated_read_4590580	chr7	-	619	4	ISM	ENSMUSG00000062116.11	ENSMUST00000056246.8	2042	5	2089	1146	2089	-1146	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAGCCTTTCTCATTAA	NA	NA	NA	NA	NA	NA	NA	NA	7122398	7118834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_7119200_7119611_7119711_7120784_7120912_7122370
ONT_simulated_read_4591236	chr4	-	757	3	ISM	ENSMUSG00000029030.15	ENSMUST00000030896.15	1724	4	405	655	371	216	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	231	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGTCCACCCACTTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	154244718	154242596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_154243023_154243725_154243880_154244541
ONT_simulated_read_4592463	chr10	-	1081	4	ISM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	3608	614	3581	540	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACCTTCCCCAGGCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	128537291	128534426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211
ONT_simulated_read_4593382	chr2	+	1917	1	ISM	ENSMUSG00000036202.17	ENST00000428287.6	7514	35	38168	8571	37850	-8571	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCACGTTGTGTCTGGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	52000995	52002912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_52001000_52002900
ONT_simulated_read_4595206	chr1	-	1334	9	ISM	ENSMUSG00000054387.14	ENST00000391947.6	1552	10	6508	71	-4	-71	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTCTGGGGCTTCGTG	NA	NA	NA	NA	NA	NA	NA	NA	132946596	132919465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132936874_132936931_132938802_132938937_132940374_132940450_132946514
ONT_simulated_read_4595247	chr17	-	1611	1	ISM	ENSMUSG00000048915.13	ENSMUST00000076840.12	4032	5	273868	1655	273695	1480	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGGGTTTGGGGCAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	62914444	62912833	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_62912800_62914400
ONT_simulated_read_4600579	chr9	+	1738	10	NNC	ENSMUSG00000032563.17	novel	3972	10	NA	NA	31	1217	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCATGGGGGGACATATG	NA	NA	NA	NA	NA	NA	NA	NA	104930468	104954888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_+_104930712_104931623_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360_104952439_104954191
ONT_simulated_read_4601062	chr5	-	856	1	ISM	ENSMUSG00000058291.15	ENSMUST00000110905.9	4749	6	11954	3300	11933	-832	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGACCATACATATGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	138606069	138605213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_138605200_138606100
ONT_simulated_read_4601663	chr4	+	664	8	ISM	ENSMUSG00000029056.14	ENSMUST00000030931.11	2508	19	12455	339	12445	-339	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGCCGACCTGGTCGTC	NA	NA	NA	NA	NA	NA	NA	NA	155061034	155064989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063377_155063483_155063948_155064050_155064182_155064252_155064951
ONT_simulated_read_4601881	chr14	-	2315	1	FSM	ENSMUSG00000114970.2	ENSMUST00000228608.2	4011	1	0	1696	0	-1696	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGAAAACATTTAATTCA	NA	NA	NA	NA	NA	NA	NA	NA	124849904	124847589	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_124847600_124849900
ONT_simulated_read_4602764	chr1	-	363	1	NIC	ENSMUSG00000009907.18	novel	4539	12	NA	NA	24145	-2730	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGTACTTGTTCAAA	NA	NA	NA	NA	NA	NA	NA	NA	106700252	106699889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_106699900_106700300
ONT_simulated_read_4604318	chr1	-	705	5	ISM	ENSMUSG00000026566.16	ENSMUST00000111435.9	2285	6	25925	1353	942	-180	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCCGGAAAGACTAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	165436173	165421161	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_165421247_165429318_165429425_165432178_165432312_165433177_165433392_165436006
ONT_simulated_read_4604425	chr1	+	944	6	ISM	ENSMUSG00000055013.17	ENST00000444431.1	1302	7	3	1217	3	-136	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCAGGCCTCCAGCCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	89716884	89816469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_89717047_89762155_89762311_89765433_89765525_89770742_89770966_89815227_89815484_89816412
ONT_simulated_read_46089	chr2	+	1644	13	ISM	ENSMUSG00000027130.16	ENST00000560164.5	3035	23	30754	64	30754	-64	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGATTAGAACGAGTCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	112177339	112190788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_112177419_112177661_112177781_112179620_112179720_112181623_112181744_112182788_112182894_112183236_112183406_112184518_112184715_112185319_112185490_112186804_112186937_112187828_112187937_112188112_112188298_112188850_112188985_112190760
ONT_simulated_read_4609710	chr12	-	1808	1	ISM	ENSMUSG00000054302.16	ENSMUST00000161592.8	4186	6	22105	1629	22045	-314	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACGGATGGTTGTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	54720561	54718753	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_54718800_54720600
ONT_simulated_read_4610626	chr6	-	1609	1	ISM	ENSMUSG00000029922.16	ENSMUST00000114823.8	2992	8	20364	0	10740	0	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTGTGTGATGACCT	NA	NA	NA	NA	NA	NA	NA	NA	39376346	39374737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_39374700_39376300
ONT_simulated_read_4611734	chr12	+	1288	1	NIC	ENSMUSG00000035133.10	novel	9323	7	NA	NA	0	-50036	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCAGTTATGTTTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	52562859	52564147	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_+_52562900_52564100
ONT_simulated_read_461331	chr17	-	903	7	ISM	ENSMUSG00000023919.9	ENSMUST00000239430.2	1442	9	-183	1529	-183	-1529	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGAGAGTATTCAAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	41245625	41235474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_41235513_41238029_41238160_41240904_41240971_41242540_41242668_41243686_41243742_41243971_41244107_41245273
ONT_simulated_read_4614094	chr12	-	117	1	NIC	ENSMUSG00000002996.18	novel	3142	11	NA	NA	9101	-3932	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGATATACCGGAAAATAC	NA	NA	NA	NA	NA	NA	NA	NA	31990506	31990389	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_31990400_31990500
ONT_simulated_read_4614346	chr7	-	517	4	ISM	ENSMUSG00000030603.17	ENSMUST00000140053.3	1244	11	7321	-50	7321	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	494	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTTAGGTGTTTAAC	NA	NA	NA	NA	NA	NA	NA	NA	27742152	27741131	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074
ONT_simulated_read_4619167	chr10	-	605	7	ISM	ENSMUSG00000019822.13	ENSMUST00000019965.13	1602	10	1012	608	1012	-608	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCTGTGACCCTCACAGT	NA	NA	NA	NA	NA	NA	NA	NA	41365324	41363775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_41363822_41363988_41364094_41364172_41364306_41364428_41364512_41364729_41364820_41364926_41365021_41365270
ONT_simulated_read_4620093	chr19	-	705	1	ISM	ENSMUSG00000041488.17	ENSMUST00000075304.14	2430	11	42246	743	42156	697	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTCTGTTTTGAGGGATG	NA	NA	NA	NA	NA	NA	NA	NA	11753929	11753224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_11753200_11753900
ONT_simulated_read_4622728	chrX	+	239	3	ISM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	63	9309	63	-9309	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGACAATGGAGCCAAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	105230768	105237996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_105230922_105235612_105235664_105237961
ONT_simulated_read_4623031	chrM	-	823	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTATAGGTGGATTATTT	NA	NA	NA	NA	NA	NA	NA	NA	2676	1853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chrM_-_1900_2700
ONT_simulated_read_4623218	chr15	-	1080	1	ISM	ENSMUSG00000037343.9	ENSMUST00000041733.9	5031	26	55572	370	55572	-370	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATGATACTCTGAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	54879976	54878896	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_54878900_54880000
ONT_simulated_read_4623426	chr11	+	684	7	ISM	ENSMUSG00000018395.20	ENSMUST00000118353.9	2178	19	26424	0	26424	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGTACAGAATTAAAGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	53484776	53491886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_53484927_53485103_53485215_53485652_53485779_53488785_53488840_53489120_53489190_53489533_53489659_53491837
ONT_simulated_read_4626312	chr5	+	1134	6	ISM	ENSMUSG00000029094.13	ENSMUST00000064571.11	6618	17	90869	3846	48638	2394	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGCTGCGTACCTCACCC	NA	NA	NA	NA	NA	NA	NA	NA	36141531	36157421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_36141651_36146897_36147013_36150884_36151050_36153300_36153492_36154861_36155027_36157042
ONT_simulated_read_4626753	chr3	-	295	2	ISM	ENSMUSG00000028179.13	ENSMUST00000118539.2	1815	12	27763	408	27763	-408	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAAGAACTGTCTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	157602951	157600292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_157600465_157602828
ONT_simulated_read_4626931	chr13	-	1522	1	ISM	ENSMUSG00000071281.13	ENSMUST00000073157.15	3957	4	20279	2064	20279	-2064	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACAAGTCCCTTCCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	67857013	67855491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_67855500_67857000
ONT_simulated_read_4627716	chr6	-	1560	1	ISM	ENSMUSG00000033769.17	ENSMUST00000160197.6	5439	22	448046	1421	447938	-1421	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTCTACAACTGGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	84598449	84596889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_84596900_84598400
ONT_simulated_read_4631804	chr8	-	1562	11	ISM	ENSMUSG00000031948.15	ENSMUST00000093120.13	2131	15	8671	0	8671	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	112729227	112720074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142
ONT_simulated_read_463228	chrX	-	810	7	ISM	ENSMUSG00000031370.13	ENST00000307771.8	1267	9	854	483	854	-483	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGAGTCCCGACTTCTACA	NA	NA	NA	NA	NA	NA	NA	NA	162736626	162719750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_162719962_162722301_162722412_162723114_162723171_162726095_162726310_162732255_162732375_162733182_162733222_162736565
ONT_simulated_read_4632705	chr16	-	1103	1	ISM	ENSMUSG00000022680.15	ENSMUST00000023361.12	4228	24	68354	523	68248	489	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAGACACCCTAGGCTAC	NA	NA	NA	NA	NA	NA	NA	NA	13652637	13651534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_13651500_13652600
ONT_simulated_read_4633462	chr19	-	393	1	ISM	ENSMUSG00000042694.18	ENSMUST00000182808.8	1618	10	29439	0	28760	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGTCTGTATGAACTTGT	NA	NA	NA	NA	NA	NA	NA	NA	47496036	47495643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_47495600_47496000
ONT_simulated_read_4633628	chr6	+	421	1	FSM	ENSMUSG00000107770.2	ENSMUST00000204831.2	514	1	0	93	0	-93	mono-exon	FALSE	NA	NA	NA	NA	NA	297	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGACTAATACAATTGGA	NA	NA	NA	NA	NA	NA	NA	NA	76261398	76261819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_76261400_76261800
ONT_simulated_read_4636209	chr10	+	351	1	ISM	ENSMUSG00000034612.8	ENST00000546689.1	589	2	30	106309	0	-106309	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGCCAGGACAAAGCCATGA	NA	NA	NA	NA	NA	NA	NA	NA	82821331	82821682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_82821300_82821700
ONT_simulated_read_4637401	chr17	-	377	1	ISM	ENSMUSG00000117760.2	ENSMUST00000237260.2	487	2	8624	0	8624	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTAGTTGTATTCATGTG	NA	NA	NA	NA	NA	NA	NA	NA	31067786	31067409	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_31067400_31067800
ONT_simulated_read_463822	chr8	-	622	6	ISM	ENSMUSG00000070003.8	ENSMUST00000049908.11	1475	17	9405	0	9405	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTACTGCTGATGTCT	NA	NA	NA	NA	NA	NA	NA	NA	71051559	71050139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71050419_71050662_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503
ONT_simulated_read_4638346	chr2	-	1842	13	ISM	ENSMUSG00000027620.17	ENST00000528062.7	2369	16	7137	140	6558	-140	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGTCTAAGTGGCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	156014942	155989594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156014747
ONT_simulated_read_4639013	chr7	-	221	1	NIC	ENSMUSG00000035901.15	novel	4862	22	NA	NA	63784	-1766	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCACTGTCCTGCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	109495619	109495398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_109495400_109495600
ONT_simulated_read_4639604	chr14	-	623	2	ISM	ENSMUSG00000021972.15	ENSMUST00000067843.10	2931	10	124154	951	71433	14	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGACTGATAGGATGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	65063142	65060617	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_65061148_65063049
ONT_simulated_read_4642725	chr9	-	164	1	FSM	ENSMUSG00000066809.2	ENSMUST00000086236.2	78	1	0	-86	0	86	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCTCAATAGACCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	25012777	25012613	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_25012600_25012800
ONT_simulated_read_4645169	chr17	-	768	2	ISM	ENSMUSG00000002504.16	ENSMUST00000234505.2	1137	5	3207	-106	3207	99	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCCCTCACATGGGATGG	NA	NA	NA	NA	NA	NA	NA	NA	24860724	24858637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24859364_24860682
ONT_simulated_read_464613	chr16	+	954	10	ISM	ENSMUSG00000008658.17	ENSMUST00000229741.2	1407	13	154464	33859	0	-32680	internal_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTACAGTGACAGGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	7042173	7193818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_7042415_7094888_7095033_7103341_7103396_7110048_7110142_7111933_7111995_7124271_7124326_7148225_7148307_7170795_7170929_7187664_7187708_7193768
ONT_simulated_read_4647437	chr4	-	1090	9	ISM	ENSMUSG00000028603.16	ENSMUST00000030340.15	2640	16	27209	878	-19904	-167	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATGTGTAGATAGGTAGA	NA	NA	NA	NA	NA	NA	NA	NA	107948520	107901913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453_107928608_107931552_107931661_107942351_107942500_107944208_107944360_107948433
ONT_simulated_read_4648713	chr12	+	318	2	ISM	ENSMUSG00000071379.3	ENSMUST00000071858.5	1526	4	0	5660	0	-5660	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGGACTGCCCCACTGGC	NA	NA	NA	NA	NA	NA	NA	NA	17740856	17836274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_17741048_17836147
ONT_simulated_read_4649303	chr5	-	2846	3	ISM	ENSMUSG00000038056.16	ENSMUST00000045291.14	14967	59	182913	37111	47732	36647	internal_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCTAGAAAATTTAAATTT	NA	NA	NA	NA	NA	NA	NA	NA	25520830	25515717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_25516418_25518253_25518547_25518977
ONT_simulated_read_4651185	chr5	-	1199	6	ISM	ENSMUSG00000061979.9	ENSMUST00000076228.3	2321	11	11373	347	11373	-347	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACAGTCCAGGAGCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	134194240	134177239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_134177846_134182962_134183049_134184578_134184753_134186429_134186518_134192462_134192645_134194177
ONT_simulated_read_4651320	chr3	+	523	1	ISM	ENSMUSG00000038712.17	ENSMUST00000039537.14	2800	10	0	12700	0	-12691	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCGAGAGTAAACCCGTGT	NA	NA	NA	NA	NA	NA	NA	NA	95190254	95190777	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_95190300_95190800
ONT_simulated_read_4655292	chr7	-	1101	13	ISM	ENSMUSG00000030630.17	ENSMUST00000032865.17	1585	14	3782	153	3782	-153	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCCAGTGTGCTGGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	84251368	84234519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84246484_84248261_84248353_84249984_84250035_84250240_84250363_84251288
ONT_simulated_read_4655442	chr16	-	442	4	ISM	ENSMUSG00000022641.16	ENSMUST00000114488.8	3293	15	110399	3399	110399	-3399	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAAAGTCCCTGGGACAT	NA	NA	NA	NA	NA	NA	NA	NA	50040957	50020920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_50020955_50022740_50022939_50029447_50029508_50040807
ONT_simulated_read_4656266	chr4	-	235	3	ISM	ENSMUSG00000028649.22	ENSMUST00000106220.9	17608	92	144262	32761	144262	-32759	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTCAATCACCAGGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	123276990	123276271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_123276314_123276405_123276508_123276899
ONT_simulated_read_4657577	chr5	-	674	5	ISM	ENSMUSG00000039753.17	ENSMUST00000121736.6	2144	9	16664	909	16629	-909	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTCAACTCCATGGACAAG	NA	NA	NA	NA	NA	NA	NA	NA	43922815	43916135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650
ONT_simulated_read_4658324	chr11	+	799	7	ISM	ENSMUSG00000017421.19	ENSMUST00000108216.8	2152	9	0	2877	0	-2877	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAAGTGTTAAACAATTG	NA	NA	NA	NA	NA	NA	NA	NA	80274156	80282232	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156
ONT_simulated_read_4662848	chr14	-	355	3	ISM	ENSMUSG00000042286.14	ENST00000321725.10	7577	66	23159	748	23159	-748	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCATGCCTCCCCAGAC	NA	NA	NA	NA	NA	NA	NA	NA	30862225	30861721	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_30861806_30861882_30862033_30862104
ONT_simulated_read_4664688	chr9	+	415	4	ISM	ENSMUSG00000032458.7	ENSMUST00000035033.7	3050	22	23615	121	23615	-121	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	232	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGGAGTTGATGGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	98469398	98470314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_98469459_98469604_98469674_98469813_98469883_98470097
ONT_simulated_read_4667880	chr11	-	705	2	ISM	ENSMUSG00000051427.15	ENSMUST00000093381.11	5015	12	11222	6581	11222	-6581	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGTAAGAAGCCCCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	4099069	4097703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_4097778_4098438
ONT_simulated_read_4672347	chr7	-	1340	1	FSM	ENSMUSG00000074024.6	ENSMUST00000182578.2	3832	1	511	1981	502	1088	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGTATCTTTAAGACC	NA	NA	NA	NA	NA	NA	NA	NA	92390165	92388825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_92388800_92390200
ONT_simulated_read_4672623	chr15	-	661	8	FSM	ENSMUSG00000050891.11	ENST00000517678.5	661	8	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGCGTGAGTGGACTT	NA	NA	NA	NA	NA	NA	NA	NA	58800598	58776576	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58800532
ONT_simulated_read_467335	chr2	+	1118	5	ISM	ENSMUSG00000026728.10	ENSMUST00000193675.2	1777	8	41	3279	41	-3279	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6655	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAGTACTACAGCAGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	13579132	13584357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231
ONT_simulated_read_4673384	chr17	-	1072	6	ISM	ENSMUSG00000023927.16	ENSMUST00000176669.8	4407	10	5567	35869	5567	-35845	internal_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCGGAAGCCGAAAGAGACC	NA	NA	NA	NA	NA	NA	NA	NA	52112380	52082348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_52082447_52089639_52090095_52092556_52092669_52110458_52110583_52111341_52111469_52112224
ONT_simulated_read_4676033	chr10	+	189	1	ISM	ENSMUSG00000019857.8	ENSMUST00000020004.8	2201	4	11297	788	10492	265	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCAGCTGCCTTTGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	53484344	53484533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_53484300_53484500
ONT_simulated_read_4676497	chr11	-	1447	8	ISM	ENSMUSG00000009356.13	ENST00000421678.6	1896	10	4427	557	4427	-557	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGCTGGCCAAGAAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	87708678	87698228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_87698307_87699952_87700127_87700941_87701195_87705072_87705234_87705722_87706048_87707237_87707445_87708123_87708254_87708559
ONT_simulated_read_4676710	chr17	+	486	3	ISM	ENSMUSG00000024073.17	ENSMUST00000183224.8	14562	73	82526	90240	82526	-90240	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCATTCAGCTACAGCT	NA	NA	NA	NA	NA	NA	NA	NA	74918072	74919138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_74918205_74918342_74918552_74918993
ONT_simulated_read_4677414	chr10	-	404	2	ISM	ENSMUSG00000019837.9	ENSMUST00000019982.9	887	6	6425	174	6420	-174	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGTCTTGTATGCAATT	NA	NA	NA	NA	NA	NA	NA	NA	40127247	40125519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_40125828_40127151
ONT_simulated_read_4678344	chr4	+	1238	10	ISM	ENSMUSG00000028274.18	ENSMUST00000108153.9	4157	16	17	139662	17	-139662	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTACTCTTATAATTCAT	NA	NA	NA	NA	NA	NA	NA	NA	33310327	33362952	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_33310525_33320518_33320629_33324873_33324978_33325058_33325148_33329519_33329596_33330841_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879
ONT_simulated_read_4679863	chr11	+	2007	17	ISM	ENSMUSG00000011877.14	ENST00000579937.5	2781	19	193	803	0	-803	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAGGAGTTCAAACATGA	NA	NA	NA	NA	NA	NA	NA	NA	77384387	77396865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_77384461_77389790_77389925_77390342_77390456_77390564_77390671_77391173_77391392_77391472_77391568_77391897_77391941_77393843_77393893_77394181_77394255_77394746_77394845_77395197_77395310_77395424_77395559_77395693_77396078_77396148_77396203_77396329_77396417_77396505_77396580_77396705
ONT_simulated_read_4679891	chr17	+	438	4	ISM	ENSMUSG00000073471.4	ENSMUST00000097423.3	2189	8	6896	5826	6896	-5826	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCCCTTCTAGAGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	8171380	8192830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_8171469_8188978_8189121_8191655_8191802_8192768
ONT_simulated_read_468065	chr9	-	971	6	ISM	ENSMUSG00000062270.15	ENSMUST00000191189.7	1223	11	17284	-185	17255	185	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	386	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGCCAAAGGTTCACTTCA	NA	NA	NA	NA	NA	NA	NA	NA	89979513	89974022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424
ONT_simulated_read_4684825	chr6	-	1928	1	ISM	ENSMUSG00000042599.9	ENSMUST00000002305.9	9566	20	63496	4743	63385	-1310	mono-exon	FALSE	NA	NA	NA	NA	NA	281	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGAGAGAGGGATACAGTC	NA	NA	NA	NA	NA	NA	NA	NA	39120227	39118299	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_39118300_39120200
ONT_simulated_read_468686	chr14	-	608	1	Antisense	novelGene_ENSMUSG00000023411.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	536	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCAAGTTTCAGATGTGT	NA	NA	NA	NA	NA	NA	NA	NA	56064539	56063931	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr14_-_56063900_56064500
ONT_simulated_read_4688004	chr13	+	311	1	ISM	ENSMUSG00000021759.15	ENSMUST00000016144.12	1598	6	0	66792	0	-66540	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGCCATCCCGAGGGCG	NA	NA	NA	NA	NA	NA	NA	NA	112937325	112937636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_112937300_112937600
ONT_simulated_read_4688739	chr7	-	536	2	ISM	ENSMUSG00000031090.15	ENSMUST00000033415.15	2641	21	24864	90	24864	-90	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGCAGCCAGTGTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	143351714	143349410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143349794_143351561
ONT_simulated_read_4689384	chr19	-	423	5	FSM	ENSMUSG00000034321.15	ENST00000485122.6	423	5	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCACCTACCCCAAAGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	41921604	41912419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_41912528_41914970_41915005_41916463_41916553_41919794_41919870_41921487
ONT_simulated_read_4691159	chr15	-	416	1	ISM	ENSMUSG00000023015.15	ENSMUST00000171702.8	3052	18	30199	533	30199	-532	mono-exon	FALSE	NA	NA	NA	NA	NA	277	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACAGGATAAAGAGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	99519325	99518909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_99518900_99519300
ONT_simulated_read_4694880	chr10	-	395	5	NIC	ENSMUSG00000040441.13	novel	3130	18	NA	NA	5660	-42	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTTTTGTAGATGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	127010734	127009534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_127009576_127009777_127009895_127009967_127010038_127010152_127010260_127010674
ONT_simulated_read_4695150	chr18	-	567	4	ISM	ENSMUSG00000024533.18	ENSMUST00000224799.2	2059	14	52620	229	52620	-229	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTCACAGGCTCCGTCT	NA	NA	NA	NA	NA	NA	NA	NA	67629702	67624288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_67624620_67628209_67628347_67628432_67628461_67629631
ONT_simulated_read_469526	chr1	-	3466	4	ISM	ENSMUSG00000026000.17	ENSMUST00000027149.12	4270	10	31823	0	31792	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCGGGTACTGTTGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	67046201	67039675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026
ONT_simulated_read_469579	chr12	+	1474	5	ISM	ENSMUSG00000021140.10	ENST00000439984.7	6934	34	131444	-78	131444	78	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGCTCTATGCATTTATGC	NA	NA	NA	NA	NA	NA	NA	NA	82038522	82043179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_82038823_82039800_82040007_82041661_82042105_82042494_82042636_82042795
ONT_simulated_read_470083	chr16	-	373	1	ISM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	11834	341	11749	321	mono-exon	FALSE	NA	NA	NA	NA	NA	428	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAATAGTGGCTGGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	87280927	87280554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_87280600_87280900
ONT_simulated_read_4703447	chr7	+	172	2	ISM	ENSMUSG00000035585.17	ENST00000665674.2	924	4	593	5198	593	-5198	internal_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCCACGAGCTGCGCT	NA	NA	NA	NA	NA	NA	NA	NA	3698187	3698516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_3698227_3698383
ONT_simulated_read_4704041	chr11	-	227	1	ISM	ENSMUSG00000053797.11	ENST00000584759.1	648	2	515	0	515	0	mono-exon	FALSE	NA	NA	NA	NA	NA	201	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGATGTCTATGTTT	NA	NA	NA	NA	NA	NA	NA	NA	100137143	100136916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100136900_100137100
ONT_simulated_read_4708796	chr2	-	1990	12	ISM	ENSMUSG00000001767.6	ENSMUST00000001818.5	3428	14	2705	796	2705	-796	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATTTTTTTCTAAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	145774229	145760194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_145760521_145761659_145761909_145762516_145762619_145763691_145763932_145765763_145765845_145766634_145766695_145767427_145767620_145768695_145768867_145770040_145770220_145772453_145772621_145773189_145773349_145774165
ONT_simulated_read_4710083	chr19	-	144	1	ISM	ENSMUSG00000024963.13	ENSMUST00000179118.2	840	6	2410	1808	2410	-1808	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACAGCCGAGCCTAAGTA	NA	NA	NA	NA	NA	NA	NA	NA	6967230	6967086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6967100_6967200
ONT_simulated_read_4710325	chr14	-	451	4	ISM	ENSMUSG00000022098.11	ENSMUST00000022693.9	3684	20	15422	17847	15422	-17847	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCCACGGACCCTTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	70742206	70729844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_70729991_70730218_70730336_70732152_70732256_70742121
ONT_simulated_read_4711432	chr15	-	518	2	ISM	ENSMUSG00000064284.13	ENSMUST00000125947.8	706	4	2723	-114	2723	67	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTCTCCAGACTTCCAAAC	NA	NA	NA	NA	NA	NA	NA	NA	85692568	85691333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_85691740_85692456
ONT_simulated_read_4712580	chr15	-	405	4	ISM	ENSMUSG00000022336.4	ENST00000677272.1	1210	11	16438	11196	16438	5764	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGAATTTGTTGAATGCC	NA	NA	NA	NA	NA	NA	NA	NA	43129656	43126070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_43126097_43126604_43126732_43128896_43129022_43129529
ONT_simulated_read_471449	chr9	+	441	3	ISM	ENSMUSG00000032594.12	ENST00000395238.5	4073	5	36	7796	25	-5197	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTCTGAGCTCCGAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	107879869	107918181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_107880022_107909197_107909409_107918103
ONT_simulated_read_4717701	chr6	+	471	4	ISM	ENSMUSG00000030102.12	ENST00000544951.6	2799	20	306075	502	306075	-502	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCAGCCGGCCTAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	108496333	108526783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_108496412_108500248_108500410_108518863_108519026_108526713
ONT_simulated_read_4718699	chr11	-	710	1	ISM	ENSMUSG00000051510.14	ENSMUST00000058162.14	4923	3	3896	3878	444	12	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGAGTGGACGAGAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	120520530	120519820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120519800_120520500
ONT_simulated_read_4718990	chr15	+	509	1	FSM	ENSMUSG00000096210.3	ENSMUST00000180086.3	2055	1	139	1407	139	-1407	mono-exon	FALSE	NA	NA	NA	NA	NA	284	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGAAGGCTGCCTCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	78912788	78913297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_78912800_78913300
ONT_simulated_read_4720103	chrX	+	457	5	ISM	ENSMUSG00000031105.17	ENST00000543953.5	1362	10	6	24868	6	-24863	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGTGATTTCCTCTACTA	NA	NA	NA	NA	NA	NA	NA	NA	47712625	47726306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_47712706_47718128_47718223_47719765_47719914_47723633_47723729_47726266
ONT_simulated_read_4720781	chr1	-	2516	1	ISM	ENSMUSG00000026564.10	ENSMUST00000192369.6	4045	6	26557	702	26531	-697	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGGAAATTCACCCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	165928934	165926418	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_165926400_165928900
ONT_simulated_read_4723641	chr7	-	1785	1	NIC	ENSMUSG00000025104.14	novel	5887	6	NA	NA	48317	-2935	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTGTTTGTTTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	81535832	81534047	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_81534000_81535800
ONT_simulated_read_472527	chr4	-	325	1	ISM	ENSMUSG00000023232.18	ENSMUST00000122374.8	1881	10	21176	223	21176	181	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTTCTCAGGGTCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	130147835	130147510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_130147500_130147800
ONT_simulated_read_4729427	chr15	-	1003	1	ISM	ENSMUSG00000016552.14	ENSMUST00000016696.13	4793	9	13358	1840	13311	-1343	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGTGCCTGCCGCCGTG	NA	NA	NA	NA	NA	NA	NA	NA	77827564	77826561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_77826600_77827600
ONT_simulated_read_473187	chr18	+	1508	10	NNC	ENSMUSG00000036880.11	novel	1516	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAACCTTTTCTTGTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	74912267	74939279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74931559_74932115_74932246_74934367_74934439_74937071_74937227_74938933
ONT_simulated_read_473273	chr15	-	644	1	ISM	ENSMUSG00000033356.4	ENSMUST00000049151.4	2840	9	2595	17621	2595	-17621	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCAAATATTTGGACGC	NA	NA	NA	NA	NA	NA	NA	NA	94438833	94438189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_94438200_94438800
ONT_simulated_read_4733078	chr11	+	643	4	ISM	ENSMUSG00000018554.14	ENSMUST00000108601.3	1351	9	3520	503	3520	0	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCCAACTCAGAGGACAC	NA	NA	NA	NA	NA	NA	NA	NA	69830672	69831920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_69830985_69831153_69831258_69831415_69831594_69831871
ONT_simulated_read_4734747	chr19	+	652	3	ISM	ENSMUSG00000067889.8	ENST00000617502.5	7459	36	-5	27053	-5	-27053	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATAAAGCGCTGCAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	4771106	4774703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4771561_4774107_4774260_4774657
ONT_simulated_read_4735525	chr1	-	1655	12	ISM	ENSMUSG00000053024.15	ENST00000640428.1	3561	23	13836	7289	13836	-7289	internal_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCATTGCCAAGTACACC	NA	NA	NA	NA	NA	NA	NA	NA	132456787	132449527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_132449618_132450070_132450192_132450672_132450849_132451095_132451224_132451330_132451482_132453044_132453175_132453555_132453693_132454025_132454202_132455432_132455533_132455813_132456024_132456349_132456446_132456647
ONT_simulated_read_4735607	chr4	-	477	1	FSM	ENSMUSG00000070923.5	ENSMUST00000094993.3	4174	1	0	3697	0	-3697	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTAACGGCGACATGGGCG	NA	NA	NA	NA	NA	NA	NA	NA	88640702	88640225	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_88640200_88640700
ONT_simulated_read_4736666	chr1	-	408	1	ISM	ENSMUSG00000052748.15	ENSMUST00000064771.12	3688	20	17025	43324	17025	-43324	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTCTACTACCCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	151287181	151286773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_151286800_151287200
ONT_simulated_read_4737080	chr7	-	744	1	ISM	ENSMUSG00000066568.13	ENSMUST00000085585.12	2944	11	43757	541	43548	54	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCCCTTGCTTTCCAGGC	NA	NA	NA	NA	NA	NA	NA	NA	34045355	34044611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_34044600_34045400
ONT_simulated_read_4738708	chr14	-	302	3	ISM	ENSMUSG00000023110.13	ENST00000553897.5	1830	16	2751	4279	2704	-4279	internal_fragment	FALSE	canonical	NA	NA	NA	NA	2540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATCGCCCTCCACCCAA	NA	NA	NA	NA	NA	NA	NA	NA	54752104	54749524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_54749612_54750747_54750912_54752053
ONT_simulated_read_4741650	chrM	+	953	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	629	0	-629	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTAATTAGGGACTAGCA	NA	NA	NA	NA	NA	NA	NA	NA	1093	2046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrM_+_1100_2000
ONT_simulated_read_4741666	chr11	-	2015	8	ISM	ENSMUSG00000020876.15	ENSMUST00000021246.9	2551	9	510	419	510	-97	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCAGCCGAGGGACTCCT	NA	NA	NA	NA	NA	NA	NA	NA	96667847	96658799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96666199_96666260_96667793
ONT_simulated_read_4742640	chr2	-	657	3	ISM	ENSMUSG00000038312.11	ENST00000374491.3	1754	10	20345	155	20345	-155	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	326	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAACCCCGCTTCTCAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	155550972	155544098	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155544513_155547574_155547697_155550851
ONT_simulated_read_4748027	chr8	-	685	1	ISM	ENSMUSG00000046691.15	ENSMUST00000177068.8	2931	4	7089	1957	6711	225	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAGAAGTGGTGGCCCCAT	NA	NA	NA	NA	NA	NA	NA	NA	107613136	107612451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_107612500_107613100
ONT_simulated_read_4748250	chr16	-	1044	1	ISM	ENSMUSG00000022668.11	ENSMUST00000162512.8	3415	6	7031	1521	6924	853	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAACATAGATGTCAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	44559695	44558651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_44558700_44559700
ONT_simulated_read_4749182	chr2	-	850	1	ISM	ENSMUSG00000026970.17	ENSMUST00000028347.13	4436	14	210232	1918	128478	-158	mono-exon	FALSE	NA	NA	NA	NA	NA	301	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGGGGACTTTTAATAGG	NA	NA	NA	NA	NA	NA	NA	NA	60583304	60582454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_60582500_60583300
ONT_simulated_read_4751284	chr10	-	573	1	NIC	ENSMUSG00000020184.16	novel	3099	12	NA	NA	18994	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2506	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGCTGACCTGCTCACAAA	NA	NA	NA	NA	NA	NA	NA	NA	117526691	117526118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_117526100_117526700
ONT_simulated_read_4751606	chr19	-	516	3	ISM	ENSMUSG00000024812.12	ENST00000649134.1	3915	21	7891	36506	7891	-36506	internal_fragment	FALSE	canonical	NA	NA	NA	NA	94	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGCGCGGGCTGGACCG	NA	NA	NA	NA	NA	NA	NA	NA	24112317	24108528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_24108838_24109969_24110073_24112213
ONT_simulated_read_4755234	chr7	+	188	1	FSM	ENSMUSG00000083974.2	ENSMUST00000120511.2	188	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCCTTTGCTTGTAATAC	NA	NA	NA	NA	NA	NA	NA	NA	97055346	97055534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_97055300_97055500
ONT_simulated_read_4755809	chr12	-	402	1	FSM	ENSMUSG00000113662.2	ENSMUST00000222675.2	2219	1	109	1708	109	-1708	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGCCCTAAAGGCCGCCGC	NA	NA	NA	NA	NA	NA	NA	NA	110568288	110567886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_110567900_110568300
ONT_simulated_read_4756451	chr4	-	280	1	ISM	ENSMUSG00000028649.22	ENSMUST00000097897.11	23495	98	208048	126400	51147	-126313	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAATAATCAGTGAGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	123370105	123369825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_123369800_123370100
ONT_simulated_read_4756773	chr5	-	1798	12	ISM	ENSMUSG00000025745.13	ENSMUST00000156859.3	4017	20	20986	1206	20986	-1206	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGGGCCTGGCAGTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	30339174	30324507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055
ONT_simulated_read_4757203	chr3	-	168	1	ISM	ENSMUSG00000040562.13	ENSMUST00000012348.9	1064	8	4339	245	4246	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCTTCCCAGCCCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	107889430	107889262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_107889300_107889400
ONT_simulated_read_4760453	chr18	-	2200	9	ISM	ENSMUSG00000024270.12	ENSMUST00000070726.10	3882	10	2193	1136	2193	-1136	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGCAGAATGCTGGGATA	NA	NA	NA	NA	NA	NA	NA	NA	24734681	24714073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_24714135_24715373_24715565_24717076_24717158_24718182_24718561_24722803_24722910_24729322_24729542_24730799_24730970_24732286_24732471_24733871
ONT_simulated_read_4762370	chr1	-	1743	6	ISM	ENSMUSG00000026024.15	ENST00000681152.1	4385	23	20986	22879	4663	-22879	internal_fragment	FALSE	canonical	NA	NA	NA	NA	142	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAGAATCCCAGTGGTAC	NA	NA	NA	NA	NA	NA	NA	NA	59255169	59242124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_59242257_59245677_59245756_59246918_59247016_59248107_59248277_59250289_59250648_59254260
ONT_simulated_read_4767946	chr4	+	918	3	NIC	ENSMUSG00000028478.19	novel	1031	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	NA	NA	NA	NA	NA	NA	NA	NA	44012642	44032846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_+_44013003_44025448_44025561_44032400
ONT_simulated_read_4768636	chr6	-	191	1	NIC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	23381	-123	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACATGGAAATGGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	125145283	125145092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_125145100_125145300
ONT_simulated_read_4769603	chr7	+	934	6	ISM	ENSMUSG00000030826.20	ENSMUST00000211173.2	1684	12	12552	73	12552	-73	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGTGTCCTTCCCCCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	45234844	45239061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_45235002_45237072_45237216_45237358_45237445_45237662_45237804_45237877_45237953_45238729
ONT_simulated_read_477177	chr12	-	1281	1	ISM	ENSMUSG00000020986.14	ENSMUST00000021375.12	4109	20	51948	406	47166	0	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTAGTTATTTTAAAATC	NA	NA	NA	NA	NA	NA	NA	NA	59006855	59005574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_59005600_59006900
ONT_simulated_read_4773341	chr8	-	462	5	ISM	ENSMUSG00000055553.17	ENSMUST00000121623.8	884	7	3116	1074	3054	-1074	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACAGCTGGAGGATGGCC	NA	NA	NA	NA	NA	NA	NA	NA	70972697	70961995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70962033_70962170_70962285_70968044_70968092_70971014_70971168_70972586
ONT_simulated_read_47778	chr16	-	626	4	ISM	ENSMUSG00000022890.14	ENSMUST00000023608.14	809	5	620	0	498	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	NA	NA	NA	NA	NA	NA	NA	84631893	84624758	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_84624884_84625312_84625438_84628216_84628396_84631696
ONT_simulated_read_478023	chr11	+	190	2	ISM	ENSMUSG00000020484.20	ENSMUST00000149623.8	897	4	260	1518	260	-1518	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACGCTGGATCCTGACGA	NA	NA	NA	NA	NA	NA	NA	NA	5471922	5473425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_5472020_5473332
ONT_simulated_read_4780271	chr16	-	429	1	ISM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	12631	444	12417	336	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATGTCCTTACTGTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	15442633	15442204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_15442200_15442600
ONT_simulated_read_4780684	chr11	-	271	1	ISM	ENSMUSG00000034354.18	ENSMUST00000109943.10	5674	18	111894	1783	63347	-1776	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGATTGGGATGTACCAC	NA	NA	NA	NA	NA	NA	NA	NA	4432921	4432650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_4432600_4432900
ONT_simulated_read_4782621	chr9	-	1065	9	ISM	ENSMUSG00000047766.16	ENSMUST00000166168.8	2784	17	6835	23125	6835	-23125	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCCAACATTGCCAGCACT	NA	NA	NA	NA	NA	NA	NA	NA	60587982	60517646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_60517705_60522376_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584567_60587351_60587455_60587787
ONT_simulated_read_4782812	chr1	+	336	3	ISM	ENSMUSG00000073633.10	ENSMUST00000097672.4	901	4	12	3887	12	-3887	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCTACCTGGACCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	84817573	84874321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_84817690_84858812_84858922_84874210
ONT_simulated_read_4787439	chr15	-	673	4	ISM	ENSMUSG00000016942.7	ENST00000381792.6	2277	16	15982	2070	15982	186	internal_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCTGGGGCAGGTGGCG	NA	NA	NA	NA	NA	NA	NA	NA	78329598	78326481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_78326754_78327876_78328046_78328295_78328413_78329483
ONT_simulated_read_4791575	chr12	-	631	3	ISM	ENSMUSG00000021068.18	ENST00000382043.8	4069	27	53693	27704	53691	-26509	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCTTGGAGCAATCTTA	NA	NA	NA	NA	NA	NA	NA	NA	70095937	70092042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_70092412_70093926_70094049_70095797
ONT_simulated_read_4796270	chr5	-	1534	1	ISM	ENSMUSG00000045438.13	ENSMUST00000049630.13	2461	3	6880	631	6880	-631	mono-exon	FALSE	NA	NA	NA	NA	NA	263	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACACAGAAAGGCTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	139324108	139322574	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_139322600_139324100
ONT_simulated_read_4796272	chr9	-	1216	7	ISM	ENSMUSG00000059890.17	ENST00000252108.8	5847	20	8038	21736	8038	1190	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCTTGTGACGGAGAACC	NA	NA	NA	NA	NA	NA	NA	NA	44863400	44856162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287
ONT_simulated_read_4797899	chr10	-	384	1	FSM	ENSMUSG00000069682.7	ENSMUST00000092620.6	635	1	0	251	0	-201	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACAGTGGGAACATTAC	NA	NA	NA	NA	NA	NA	NA	NA	29575376	29574992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_29575000_29575400
ONT_simulated_read_479811	chr19	-	604	4	ISM	ENSMUSG00000024659.16	ENSMUST00000235280.2	1622	14	12988	0	12988	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	4253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGTCATTGTCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	20355049	20350791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_20351135_20352588_20352712_20354015_20354075_20354970
ONT_simulated_read_4799275	chr5	-	299	1	ISM	ENSMUSG00000046798.15	ENSMUST00000179804.8	3752	5	6339	3137	6280	-2929	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCATCGTGATCGCAATG	NA	NA	NA	NA	NA	NA	NA	NA	5558450	5558151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_5558200_5558400
ONT_simulated_read_4800121	chr4	-	361	2	ISM	ENSMUSG00000028433.15	ENSMUST00000030143.13	4368	29	79658	714	79658	-714	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGACCCTCTGCTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	41195477	41195029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_41195247_41195333
ONT_simulated_read_4801292	chr4	+	1140	4	ISM	ENSMUSG00000028437.15	ENSMUST00000108060.10	2514	6	52	10030	45	-9342	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCTTGGGCTTTCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	41349047	41379736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_41349232_41366889_41366931_41371724_41371850_41378946
ONT_simulated_read_4801899	chr6	-	425	3	ISM	ENSMUSG00000014551.9	ENSMUST00000140438.2	6073	4	5243	5428	29	78	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGATGGAACTCTGCAAT	NA	NA	NA	NA	NA	NA	NA	NA	92155771	92151933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_92152190_92152689_92152778_92155690
ONT_simulated_read_4802646	chr3	-	643	6	NIC	ENSMUSG00000027676.12	novel	3606	20	NA	NA	5003	-15871	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAGATGATAACTGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	33893341	33884263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_33884307_33884805_33884910_33890864_33890994_33891088_33891182_33891954_33892114_33893226
ONT_simulated_read_480399	chr7	+	1046	1	ISM	ENSMUSG00000089847.9	ENSMUST00000106783.8	3273	3	1061	1475	527	313	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTGGAGATGGGGAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	105290323	105291369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105290300_105291400
ONT_simulated_read_4804939	chr8	-	460	1	ISM	ENSMUSG00000007950.10	ENSMUST00000008094.10	1978	5	6296	195	6296	-195	mono-exon	FALSE	NA	NA	NA	NA	NA	182	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCCGCACTGGGAAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	71910003	71909543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71909500_71910000
ONT_simulated_read_4807043	chr3	-	769	4	ISM	ENSMUSG00000037174.19	ENSMUST00000108051.8	2514	7	12509	1759	12363	-1739	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGGAGACGGGAGAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	51172426	51164844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_51165197_51166592_51166786_51168419_51168507_51172289
ONT_simulated_read_48094	chr1	-	348	3	ISM	ENSMUSG00000090553.9	ENSMUST00000166915.8	503	5	1332	0	1256	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTTCATTCTGGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	133536697	133531608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_133531815_133534238_133534318_133536634
ONT_simulated_read_4809472	chr5	+	704	2	ISM	ENSMUSG00000025857.11	ENSMUST00000026975.11	3450	13	6	34931	0	-34449	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCACTGTGATCCAGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	139135983	139137334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_139136591_139137237
ONT_simulated_read_4810338	chr2	+	882	9	NIC	ENSMUSG00000017760.17	novel	2534	15	NA	NA	19	-2142	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACACCACAGCCCCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	164675992	164679322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_+_164676129_164676239_164676352_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276
ONT_simulated_read_4811014	chr15	-	1938	12	ISM	ENSMUSG00000022391.17	ENSMUST00000171115.3	2743	17	10939	111	10939	-111	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCACTCAGGAGACAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	81603124	81588922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943
ONT_simulated_read_4817262	chr15	-	658	1	ISM	ENSMUSG00000055762.17	ENSMUST00000109975.10	2842	9	5569	8314	5499	-7616	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCCTCTGGGCAGCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	75775620	75774962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75775000_75775600
ONT_simulated_read_4817760	chr7	+	421	4	ISM	ENSMUSG00000038695.14	ENSMUST00000118628.8	864	5	78	472	29	-360	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGCTGGGGCTGCTGTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	44117546	44120600	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_44117615_44118230_44118394_44119835_44119962_44120536
ONT_simulated_read_4818366	chr7	-	446	1	ISM	ENSMUSG00000059108.5	ENSMUST00000209328.2	678	3	1778	2	762	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGTGAGACTTCCTATC	NA	NA	NA	NA	NA	NA	NA	NA	140596059	140595613	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_140595600_140596100
ONT_simulated_read_4819179	chr17	-	205	1	ISM	ENSMUSG00000024050.19	ENST00000389282.8	3642	7	990	7856	990	-6713	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTGGGGCTGCCAGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	32580915	32580710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32580700_32580900
ONT_simulated_read_4824454	chrX	-	1044	1	ISM	ENSMUSG00000031229.17	ENST00000675732.1	5310	18	45584	1773	45584	-1769	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATCTGTCAGCCATGGTG	NA	NA	NA	NA	NA	NA	NA	NA	104844033	104842989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_104843000_104844000
ONT_simulated_read_4825475	chr9	-	460	1	FSM	ENSMUSG00000053128.16	ENSMUST00000056328.6	2724	1	1451	813	981	-806	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTCTTTGCCCCCGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	44023350	44022890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_44022900_44023400
ONT_simulated_read_4827733	chr10	-	1921	1	ISM	ENSMUSG00000020099.9	ENSMUST00000077925.7	5869	17	66211	857	66012	-857	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGTGAGCAAGTCCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	60601149	60599228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_60599200_60601100
ONT_simulated_read_4828315	chr5	+	487	4	ISM	ENSMUSG00000029389.18	ENSMUST00000071057.14	2799	14	9035	2687	8985	-2687	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGTGCAGCCTCATCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	124699961	124705036	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_124700101_124700652_124700746_124704443_124704559_124704896
ONT_simulated_read_482897	chr6	-	541	1	ISM	ENSMUSG00000030286.7	ENSMUST00000032425.7	1985	8	15634	604	15634	-604	mono-exon	FALSE	NA	NA	NA	NA	NA	234	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTTCTTTACACACGTAA	NA	NA	NA	NA	NA	NA	NA	NA	113492979	113492438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113492400_113493000
ONT_simulated_read_4829533	chr8	+	164	1	ISM	ENSMUSG00000033751.6	ENSMUST00000036734.6	2494	2	51	3746	51	-3746	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGATGCCATCCTGAATTA	NA	NA	NA	NA	NA	NA	NA	NA	85558201	85558365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_85558200_85558400
ONT_simulated_read_483005	chr14	+	584	7	ISM	ENSMUSG00000021950.16	ENSMUST00000120077.2	1208	12	0	6077	0	-4044	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACGGTACCTTGACCTT	NA	NA	NA	NA	NA	NA	NA	NA	33807981	33815901	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_33808034_33811467_33811559_33812563_33812659_33813757_33813872_33814486_33814578_33815334_33815415_33815840
ONT_simulated_read_4830642	chr10	-	1662	10	ISM	ENSMUSG00000064181.7	ENSMUST00000219109.2	1844	11	10960	0	10909	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGCGTGTGTCTTTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	116775376	116742681	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_116743024_116746029_116746100_116746186_116746287_116750001_116750115_116751748_116751878_116754666_116754871_116755478_116755557_116764093_116764190_116773301_116773561_116775105
ONT_simulated_read_48333	chr10	-	833	6	FSM	ENSMUSG00000019982.16	ENST00000420123.6	866	6	33	0	33	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTGGGATGGGTGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	21032326	21024220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_21024336_21024676_21024758_21026204_21026440_21028334_21028556_21028790_21028884_21032238
ONT_simulated_read_4835931	chr16	-	423	4	ISM	ENSMUSG00000022861.18	ENSMUST00000023578.14	2725	24	108504	12712	108274	-12712	internal_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTGGCCCAGTGCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	22367467	22300683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_22300772_22318973_22319152_22338294_22338386_22367401
ONT_simulated_read_4839196	chr5	+	1164	5	ISM	ENSMUSG00000025340.15	ENSMUST00000026390.8	2828	8	19892	860	19892	-860	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTCTGTGTAGACACTG	NA	NA	NA	NA	NA	NA	NA	NA	130235893	130242318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_130235932_130237526_130237660_130239264_130239357_130240702_130240960_130241674
ONT_simulated_read_484091	chr8	-	561	3	ISM	ENSMUSG00000052926.17	ENSMUST00000147812.8	1532	11	-141	8562	-141	-8562	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCCATTACAAACCACGCC	NA	NA	NA	NA	NA	NA	NA	NA	85696210	85692857	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85692917_85694291_85694498_85695914
ONT_simulated_read_4841204	chr12	-	1575	1	NIC	ENSMUSG00000021022.10	novel	4216	14	NA	NA	21192	-1241	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTAACCGATTGTCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	55328591	55327016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_55327000_55328600
ONT_simulated_read_4842675	chr12	+	824	4	ISM	ENSMUSG00000021288.20	ENSMUST00000122300.8	2268	16	30309	-48	17003	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGAGTGAGTGCGTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	111755755	111773209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_111755921_111761981_111762113_111772441_111772509_111772748
ONT_simulated_read_4844387	chr3	-	192	3	ISM	ENSMUSG00000040562.13	ENSMUST00000066530.7	854	8	250	3332	250	-3332	internal_fragment	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCGCTACCTTGCCCGAA	NA	NA	NA	NA	NA	NA	NA	NA	107893426	107892594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_107892645_107892933_107892999_107893349
ONT_simulated_read_4846901	chr1	-	397	1	NIC	ENSMUSG00000057363.13	novel	4620	15	NA	NA	77401	-435	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTATGCTGTAACTGTC	NA	NA	NA	NA	NA	NA	NA	NA	43789523	43789126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_43789100_43789500
ONT_simulated_read_4849547	chr17	-	821	5	ISM	ENSMUSG00000002249.22	ENSMUST00000219703.3	1579	13	16788	0	16423	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGGACCCAGGCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	28552897	28551587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_28551808_28551924_28552078_28552165_28552307_28552479_28552654_28552764
ONT_simulated_read_4850306	chr1	+	550	4	ISM	ENSMUSG00000026223.16	ENSMUST00000027425.16	2230	6	338	2205	0	-1889	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCAACACCACCATCGTG	NA	NA	NA	NA	NA	NA	NA	NA	85822339	85834191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_85822511_85830730_85830872_85832934_85833124_85834142
ONT_simulated_read_4850868	chr17	+	2209	13	ISM	ENSMUSG00000002372.10	ENSMUST00000233319.2	2567	17	23370	0	23370	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	NA	NA	NA	NA	NA	NA	NA	57003734	57018764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
ONT_simulated_read_4851527	chr2	+	312	4	ISM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	4156	4053	4156	-4053	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAAGCAACGGCAAGC	NA	NA	NA	NA	NA	NA	NA	NA	109852317	109871608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_109852360_109862676_109862785_109870918_109871078_109871605
ONT_simulated_read_485312	chr19	-	2135	12	ISM	ENSMUSG00000056999.17	ENST00000677079.1	4491	24	58691	1102	58614	-1102	internal_fragment	TRUE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACATTTCTGTTTCTCG	NA	NA	NA	NA	NA	NA	NA	NA	37281396	37247495	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_37248237_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292
ONT_simulated_read_4853993	chr6	-	1753	12	ISM	ENSMUSG00000029676.16	ENSMUST00000115330.8	3151	18	8752	8622	-2457	789	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGGTCAGCTCAAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	25800473	25752357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282
ONT_simulated_read_4855439	chr6	-	133	1	ISM	ENSMUSG00000029915.15	ENSMUST00000101491.11	3747	6	7723	3054	7166	0	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAATTTTTACAGAGCTAG	NA	NA	NA	NA	NA	NA	NA	NA	40555014	40554881	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_40554900_40555000
ONT_simulated_read_4856145	chr15	+	778	3	ISM	ENSMUSG00000033819.17	ENSMUST00000135388.3	2827	12	18882	2982	18882	-2982	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACCTCTGCATGCTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	76574728	76576137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76575353_76575896_76575968_76576054
ONT_simulated_read_4856251	chr15	+	280	3	ISM	ENSMUSG00000055024.13	ENST00000674155.1	8251	30	26704	35244	26704	-35244	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCAGGATCTTCGAAACCA	NA	NA	NA	NA	NA	NA	NA	NA	81497533	81501029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_81497617_81500232_81500327_81500926
ONT_simulated_read_485756	chr4	+	1123	9	ISM	ENSMUSG00000037366.15	ENSMUST00000105870.8	3180	11	5499	4881	35	2	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGGAGACAAGTGGGGCG	NA	NA	NA	NA	NA	NA	NA	NA	134130280	134149843	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_134130416_134131403_134131555_134132316_134132414_134138214_134138284_134139077_134139217_134140652_134140767_134145352_134145445_134147179_134147351_134149688
ONT_simulated_read_4857598	chr11	+	974	8	ISM	ENSMUSG00000040746.16	ENST00000572430.5	1366	10	631	72	631	-72	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	509	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGCTGAGGGTGAGGGA	NA	NA	NA	NA	NA	NA	NA	NA	70538900	70542100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ONT_simulated_read_4857889	chr5	+	1550	9	NIC	ENSMUSG00000029095.18	novel	2623	15	NA	NA	13684	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGTTTTACGGTCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	35985467	36041493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_+_35985527_35990404_35990475_35994291_35994442_35997133_35997167_35998624_35998746_36014471_36014525_36015169_36015309_36032176_36032258_36040649
ONT_simulated_read_4860665	chr19	+	1302	13	ISM	ENSMUSG00000010097.16	ENSMUST00000010241.14	2326	21	34	3637	0	1994	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTATCCCAGGGTCCCATA	NA	NA	NA	NA	NA	NA	NA	NA	8734470	8744649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8742396_8744160_8744198_8744443_8744513_8744591
ONT_simulated_read_4864140	chr12	+	946	9	ISM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	121	10297	0	-10297	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCATCAGAGTTTGTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	110452292	110527825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731
ONT_simulated_read_486467	chr2	-	788	5	ISM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	3494	1496	3494	-1496	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCGGGGGAGAAGCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	168793698	168768776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_168768854_168777130_168777383_168781890_168781954_168782656_168782819_168793464
ONT_simulated_read_4865749	chr8	-	582	1	ISM	ENSMUSG00000043251.7	ENSMUST00000057855.4	2497	14	2242	3351	2242	-3351	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCACTGCATGTGTACAC	NA	NA	NA	NA	NA	NA	NA	NA	106020488	106019906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_106019900_106020500
ONT_simulated_read_4865873	chr9	-	765	1	ISM	ENSMUSG00000006235.7	ENSMUST00000006397.7	1761	8	3845	0	3845	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCTTATTTGTGTATG	NA	NA	NA	NA	NA	NA	NA	NA	21870957	21870192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21870200_21871000
ONT_simulated_read_4866247	chr5	-	1796	6	NNC	ENSMUSG00000038056.16	novel	3041	15	NA	NA	9792	1	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTAAATAAAACAGTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	25590757	25577297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr5_-_25578468_25579487_25579563_25580339_25580454_25580873_25581026_25582110_25582281_25590642
ONT_simulated_read_4868823	chr7	-	183	3	ISM	ENSMUSG00000030689.16	ENST00000567705.5	827	7	4069	289	3733	-289	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCCAGTGTTGGGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	126456902	126452101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126452164_126456397_126456464_126456847
ONT_simulated_read_4868994	chr5	+	3083	15	ISM	ENSMUSG00000037210.17	ENSMUST00000094867.8	3696	17	0	19737	0	-19737	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAATGGGAAGCAGCACG	NA	NA	NA	NA	NA	NA	NA	NA	34583680	34623354	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_34583846_34588475_34588601_34593794_34593943_34596654_34596733_34597464_34597578_34597691_34597935_34600644_34600799_34600922_34601103_34602005_34602258_34615248_34615448_34616341_34616633_34618438_34618722_34619427_34619612_34621317_34621549_34622917
ONT_simulated_read_486902	chr7	-	181	2	ISM	ENSMUSG00000061787.16	ENSMUST00000080813.5	494	5	1456	0	1456	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1597	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	80993546	80992480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80992598_80993482
ONT_simulated_read_4869825	chr4	-	1354	8	ISM	ENSMUSG00000029060.18	ENST00000504599.6	2877	18	4283	0	4283	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTCCACACGCCGTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	155741527	155739209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369
ONT_simulated_read_487315	chr5	+	1120	10	ISM	ENSMUSG00000037426.19	ENST00000646969.1	5025	40	79526	16217	79526	-16217	internal_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCTTGTGCACTCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	33101456	33132756	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33116624_33116691_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660
ONT_simulated_read_487466	chr14	-	787	7	FSM	ENSMUSG00000022177.10	ENST00000342454.12	908	7	9	112	9	-112	multi-exon	FALSE	canonical	NA	NA	NA	NA	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCTGGGAGAAGACTTTG	NA	NA	NA	NA	NA	NA	NA	NA	54787487	54779639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_54779715_54779839_54779909_54781235_54781367_54781661_54781808_54783182_54783280_54787125_54787258_54787350
ONT_simulated_read_4875224	chr14	-	2333	18	ISM	ENSMUSG00000021820.19	ENSMUST00000080440.14	3604	20	14767	1046	14703	698	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGGACCATCTTTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	20829331	20785996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20795859_20795929_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271
ONT_simulated_read_4877936	chr14	-	172	1	ISM	ENSMUSG00000033644.6	ENSMUST00000048129.6	4916	23	54666	1780	52304	-133	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAGCAACTGGACTCAGC	NA	NA	NA	NA	NA	NA	NA	NA	70611877	70611705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_70611700_70611900
ONT_simulated_read_4878563	chr11	-	614	1	ISM	ENSMUSG00000020614.14	ENSMUST00000020938.8	2541	11	48717	0	48717	0	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGGCTTTCTCCAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	109564365	109563751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_109563800_109564400
ONT_simulated_read_4880572	chr9	+	2335	12	ISM	ENSMUSG00000032479.16	ENSMUST00000035055.15	6091	19	105282	1458	-15306	-673	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTCCTCTCCCAATAACC	NA	NA	NA	NA	NA	NA	NA	NA	109865809	109911565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910802
ONT_simulated_read_4880597	chr2	-	518	1	ISM	ENSMUSG00000026753.6	ENSMUST00000028087.6	4115	7	28888	2692	28757	-269	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCATTTCTTTTTTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	39087575	39087057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_39087100_39087600
ONT_simulated_read_4882074	chr19	-	1610	8	ISM	ENSMUSG00000024937.16	ENSMUST00000236215.2	3160	19	9775	5	9775	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAACCAGCGCCTGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	5766523	5758082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5758454_5758583_5758699_5758785_5758860_5760238_5760339_5760601_5760726_5760820_5760877_5760996_5761067_5765823
ONT_simulated_read_48842	chr4	+	678	4	ISM	ENSMUSG00000028221.4	ENSMUST00000029875.4	2339	7	0	21616	0	-21616	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTGCCGATCCAGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	14864075	14893560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_14864438_14886533_14886683_14892392_14892500_14893500
ONT_simulated_read_4889305	chr16	-	370	4	ISM	ENSMUSG00000025613.14	ENSMUST00000175977.8	1470	14	9433	923	9433	-923	internal_fragment	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTAAAGGATATGTTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	87283243	87281798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_87281812_87282467_87282633_87282721_87282794_87283123
ONT_simulated_read_4889447	chr15	+	881	9	NNC	ENSMUSG00000022613.9	novel	1130	10	NA	NA	-40	1	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTCCAATACCCTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	89219133	89221052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_89219256_89219480_89219562_89219690_89219854_89220042_89220111_89220217_89220328_89220430_89220499_89220596_89220647_89220732_89220846_89220946
ONT_simulated_read_4889524	chr6	+	480	4	ISM	ENSMUSG00000029797.14	ENST00000465639.5	2477	10	646	5315	646	-5315	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGGTGCGCCACAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	48470713	48472141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_48470838_48471005_48471123_48471757_48471897_48472041
ONT_simulated_read_4889689	chr13	-	3152	1	NIC	ENSMUSG00000113030.2	novel	558	5	NA	NA	2754	-25478	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTCTAGAAATCTCAAATC	NA	NA	NA	NA	NA	NA	NA	NA	18164364	18161212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_18161200_18164400
ONT_simulated_read_4892156	chr1	+	2261	2	ISM	ENSMUSG00000026078.11	ENSMUST00000027247.11	3914	6	0	5974	0	-5974	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	343	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGAATGACATCCTACGT	NA	NA	NA	NA	NA	NA	NA	NA	39024688	39030345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_39026931_39030326
ONT_simulated_read_4892227	chr4	-	726	6	ISM	ENSMUSG00000028952.13	ENSMUST00000066715.11	2218	11	4877	770	4877	-770	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATTAGTAGGCAAGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	152107241	152105000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152
ONT_simulated_read_4894832	chr6	+	1433	11	ISM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	0	1129	0	-1129	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCTACTACTTGGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	124639989	124680252	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189
ONT_simulated_read_4896066	chr7	-	5048	2	ISM	ENSMUSG00000063801.8	ENSMUST00000075657.8	5813	6	38101	323	38101	-323	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGGAGCAACCTGACGT	NA	NA	NA	NA	NA	NA	NA	NA	79532296	79525395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_79530361_79532213
ONT_simulated_read_4897462	chr5	-	1637	10	ISM	ENSMUSG00000039987.16	ENST00000275575.11	4407	16	49394	13434	49394	-13434	internal_fragment	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTTGTGTTTATCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	21010803	20977200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987490_20994626_20994783_20999292_20999480_21006899_21007065_21008182_21008349_21010652
ONT_simulated_read_4900221	chr10	+	1359	10	ISM	ENSMUSG00000019849.12	ENSMUST00000099858.4	10933	15	0	41217	0	-41217	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTTACCAAAGAGGAACTG	NA	NA	NA	NA	NA	NA	NA	NA	44943298	45002077	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_44943472_44948148_44948224_44967088_44967223_44968757_44968889_44971076_44971287_44973488_44973611_44983867_44983974_44991158_44991351_44996738_44996937_45002059
ONT_simulated_read_4902050	chr11	-	752	3	ISM	ENSMUSG00000044328.14	ENSMUST00000060417.11	1463	7	4096	261	4096	-261	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTTGCCTTCGCGCCGG	NA	NA	NA	NA	NA	NA	NA	NA	77400100	77399185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_77399204_77399282_77399818_77399901
ONT_simulated_read_4902947	chr10	-	796	1	ISM	ENSMUSG00000010461.17	ENSMUST00000092665.12	5304	19	243638	2506	66861	0	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATACAAAATCAAACAAAC	NA	NA	NA	NA	NA	NA	NA	NA	22982163	22981367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_22981400_22982200
ONT_simulated_read_4903875	chr11	+	615	6	ISM	ENSMUSG00000020901.14	ENST00000616147.4	2541	19	19	10835	19	-5646	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCCCACTGCGACCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	68322985	68381430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_68323089_68366228_68366330_68367130_68367200_68368269_68368409_68377376_68377447_68381297
ONT_simulated_read_4905771	chr15	-	1431	3	ISM	ENSMUSG00000053929.18	ENST00000530374.6	2139	4	7823	65	7618	-65	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCTGGTAGGGCTAAACAA	NA	NA	NA	NA	NA	NA	NA	NA	76533298	76529713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76530775_76532298_76532511_76533140
ONT_simulated_read_4908308	chr5	+	369	3	ISM	ENSMUSG00000029376.9	ENST00000433372.5	696	6	13864	14664	13864	-14664	internal_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACGTTGATGGATTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	91094632	91107608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_91094834_91096681_91096805_91107563
ONT_simulated_read_4908716	chr18	-	621	3	ISM	ENSMUSG00000044252.19	ENSMUST00000121888.8	2674	15	-56	64249	-56	-63385	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCACAGAATGTCTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	12995536	12952633	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_12952719_12974240_12974404_12995163
ONT_simulated_read_4909053	chr8	+	620	5	ISM	ENSMUSG00000031981.8	ENST00000354537.1	1794	16	-31	17077	2	-17077	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGACTTCACTGGGGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	125302851	125324289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_125303097_125315771_125315842_125318418_125318538_125321367_125321502_125324237
ONT_simulated_read_490987	chr1	-	795	1	ISM	ENSMUSG00000041577.6	ENSMUST00000048432.6	3615	3	8644	1672	8644	-1672	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCCTTTGGGGCAAACACA	NA	NA	NA	NA	NA	NA	NA	NA	133840508	133839713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_133839700_133840500
ONT_simulated_read_4909873	chr3	+	419	4	ISM	ENSMUSG00000028013.17	ENST00000432483.6	460	5	11	4164	11	-4164	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	939	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTTTTAGTCATGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	133053836	133079473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_133053952_133073583_133073712_133076140_133076227_133079383
ONT_simulated_read_4910311	chr7	-	1161	8	ISM	ENSMUSG00000030979.14	ENSMUST00000106146.8	1483	10	7065	168	7065	-159	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTCCAGCCTACTATTA	NA	NA	NA	NA	NA	NA	NA	NA	133303622	133288252	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567
ONT_simulated_read_4910502	chr4	+	1318	10	ISM	ENSMUSG00000040859.15	ENSMUST00000048162.10	2823	11	0	3405	0	-2129	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGAAGTGCAGATGGCC	NA	NA	NA	NA	NA	NA	NA	NA	129355373	129378886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_129355499_129355734_129355796_129359022_129359140_129360615_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829
ONT_simulated_read_4914062	chr1	-	1475	4	ISM	ENSMUSG00000033159.15	ENSMUST00000190679.7	2062	8	2215	0	2215	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGCCTTTTCCTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	75116120	75112411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990
ONT_simulated_read_4915240	chr5	-	1164	1	ISM	ENSMUSG00000019295.9	ENSMUST00000019439.9	2828	4	3840	197	910	-197	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTGCTACCAGAGCAAAC	NA	NA	NA	NA	NA	NA	NA	NA	33811920	33810756	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_33810800_33811900
ONT_simulated_read_4915777	chr7	-	1422	1	FSM	ENSMUSG00000062944.5	ENSMUST00000078816.5	3574	1	682	1470	682	-1470	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAACAAGATTTAAACACA	NA	NA	NA	NA	NA	NA	NA	NA	127836521	127835099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_127835100_127836500
ONT_simulated_read_4916558	chr9	+	1590	7	ISM	ENSMUSG00000032077.6	ENSMUST00000074957.5	2539	10	5261	0	5261	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTGGCTCAGATGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	46199566	46210408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_46199734_46201423_46201642_46202605_46202709_46202992_46203132_46203363_46203549_46203745_46203828_46209712
ONT_simulated_read_491678	chr9	-	613	6	ISM	ENSMUSG00000032126.17	ENST00000543090.5	1212	11	2168	241	2168	-241	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCACAGGAACCCTGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	44250828	44247958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44249211_44249326_44250774
ONT_simulated_read_4920278	chr14	-	430	3	ISM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	25387	17259	25387	-17259	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATGGAAGCCCTTTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	45742188	45713510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_45713571_45719888_45720024_45741953
ONT_simulated_read_4921823	chr12	+	940	9	ISM	ENSMUSG00000020571.14	ENSMUST00000239402.2	2125	13	10646	758	10646	-758	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCAGCCTTCCTTGGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	17327241	17334013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
ONT_simulated_read_4922133	chr5	-	280	2	ISM	ENSMUSG00000029014.15	ENST00000249270.11	1826	15	27189	13	27189	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTATAGTCATCATTTAA	NA	NA	NA	NA	NA	NA	NA	NA	21962899	21962264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_21962408_21962762
ONT_simulated_read_492226	chr15	+	851	4	FSM	ENSMUSG00000005124.11	ENST00000220856.6	851	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	2777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGTGTGGCTCAGGGTA	NA	NA	NA	NA	NA	NA	NA	NA	66763407	66791304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_66763484_66778249_66778530_66789125_66789320_66791003
ONT_simulated_read_4925269	chr11	+	518	6	ISM	ENSMUSG00000018411.18	ENST00000535772.6	1314	10	41	21507	41	-21453	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTAAGACTCCTCCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	104122340	104197560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_104122434_104173193_104173307_104177948_104178036_104185684_104185751_104193186_104193237_104197451
ONT_simulated_read_4927843	chr11	-	1232	3	ISM	ENSMUSG00000020925.17	ENSMUST00000092569.13	2366	5	7474	746	7426	-744	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTTCTATCTTGATTTA	NA	NA	NA	NA	NA	NA	NA	NA	102581134	102576257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_102577323_102579626_102579686_102581026
ONT_simulated_read_4928897	chr11	-	1764	4	ISM	ENSMUSG00000015837.16	ENSMUST00000015981.12	2673	8	4691	199	4665	-199	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	549	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTGTTCCAAACAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	50096927	50090391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_50091775_50093339_50093422_50093640_50093862_50096849
ONT_simulated_read_4929264	chr16	-	4024	1	ISM	ENSMUSG00000022952.18	ENSMUST00000023673.14	5861	8	220025	635	90001	-635	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATAATAAACAAGCATGGT	NA	NA	NA	NA	NA	NA	NA	NA	92403012	92398988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_92399000_92403000
ONT_simulated_read_4929331	chr7	-	593	4	ISM	ENSMUSG00000030737.18	ENSMUST00000107086.9	3993	14	6802	24382	6802	-22692	internal_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGATGCCCAAGGAGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	99338214	99331977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_99332093_99334682_99334782_99335090_99335325_99338069
ONT_simulated_read_4932552	chr4	+	790	6	ISM	ENSMUSG00000000085.17	ENSMUST00000106298.10	1995	13	0	23901	0	-23901	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGAGCATCAGCCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	120319276	120362555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_120319353_120320271_120320343_120325431_120325667_120335198_120335288_120340786_120341031_120362480
ONT_simulated_read_4932802	chr16	-	1007	7	ISM	ENSMUSG00000037965.16	ENSMUST00000037633.16	3825	23	23129	10770	23129	-10770	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAGTTCGTTATGGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	10971128	10965225	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969190_10969729_10969795_10970922
ONT_simulated_read_4939390	chr11	+	2058	18	ISM	ENSMUSG00000011877.14	ENST00000579937.5	2781	19	202	627	0	-627	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGATGGCTTCTCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	77384396	77397041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_77384461_77389790_77389925_77390342_77390456_77390564_77390671_77391173_77391392_77391472_77391568_77391897_77391941_77393843_77393893_77394181_77394255_77394746_77394845_77395197_77395310_77395424_77395559_77395693_77396078_77396148_77396203_77396329_77396417_77396505_77396580_77396705_77396889_77397004
ONT_simulated_read_4939531	chr9	+	400	3	ISM	ENSMUSG00000036972.15	ENSMUST00000173933.8	1764	5	137	8043	133	-5414	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGAGACATGTATGCGAG	NA	NA	NA	NA	NA	NA	NA	NA	91253402	91260968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_91253587_91254660_91254746_91260837
ONT_simulated_read_4940	chr15	+	749	3	ISM	ENSMUSG00000033819.17	ENSMUST00000135388.3	2827	12	0	4282	0	-4282	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTACACACCTTCCTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	76555846	76574837	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76555963_76573527_76573695_76574371
ONT_simulated_read_4940179	chr8	+	599	4	ISM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	20	3191	20	-3191	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCTGGGAACATGACTAC	NA	NA	NA	NA	NA	NA	NA	NA	125448897	125457671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530
ONT_simulated_read_4940186	chr8	-	911	1	NIC	ENSMUSG00000038542.15	novel	2860	14	NA	NA	27169	-191	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGGGCCCTCACCCTGCA	NA	NA	NA	NA	NA	NA	NA	NA	13128290	13127379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_13127400_13128300
ONT_simulated_read_4941582	chr13	+	441	4	ISM	ENSMUSG00000021390.7	ENSMUST00000021822.7	2566	7	0	8925	0	-7803	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGCTTAAGTGGCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	49761521	49769052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_49761603_49762589_49762834_49764775_49764870_49769030
ONT_simulated_read_4942032	chr14	-	2021	11	ISM	ENSMUSG00000022185.20	ENSMUST00000141453.8	2381	12	1809	227	1381	-221	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTGGGGACAGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	54889315	54879844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884025_54884159_54884291_54885544_54885588_54889173
ONT_simulated_read_4942841	chr13	-	2052	3	ISM	ENSMUSG00000001707.9	ENSMUST00000001757.9	2553	4	2839	328	2839	-328	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	328	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAACACTTGCCATGGT	NA	NA	NA	NA	NA	NA	NA	NA	38840195	38828510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_38830287_38838971_38839068_38840015
ONT_simulated_read_4944480	chr2	-	360	1	ISM	ENSMUSG00000016346.18	ENSMUST00000149964.9	8209	17	53476	5800	53389	-339	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGAGGCTGGAGGGCACC	NA	NA	NA	NA	NA	NA	NA	NA	180723531	180723171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_180723200_180723500
ONT_simulated_read_4945201	chr15	-	801	5	ISM	ENSMUSG00000041815.15	ENSMUST00000100375.11	3157	8	16004	1733	16004	-1733	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCTGTGCGTTCCATTTC	NA	NA	NA	NA	NA	NA	NA	NA	83017528	83011911	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347
ONT_simulated_read_4947718	chr11	-	945	3	ISM	ENSMUSG00000020922.12	ENSMUST00000107156.9	2015	4	18045	951	18045	-951	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	214	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACTAGATCATGGCCACT	NA	NA	NA	NA	NA	NA	NA	NA	102058010	102054273	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_102054994_102056185_102056313_102057912
ONT_simulated_read_4948478	chr5	-	498	5	ISM	ENSMUSG00000029413.15	ENSMUST00000159345.8	1629	11	1081	5294	1081	-5294	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGCTGGCCAAGACTCCC	NA	NA	NA	NA	NA	NA	NA	NA	92424943	92411585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_92411623_92412939_92413017_92415900_92415992_92420302_92420430_92424777
ONT_simulated_read_4949194	chr12	-	1086	5	ISM	ENSMUSG00000020986.14	ENSMUST00000165134.2	2529	18	34211	-250	34211	250	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAATTTAATATTTTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	59019810	59006239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666
ONT_simulated_read_4949649	chr6	+	644	5	ISM	ENSMUSG00000038271.18	ENSMUST00000119527.8	2840	9	560	9052	550	-9046	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAGCATCAACGAGGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	125122763	125129693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_125122993_125126551_125126613_125126703_125126800_125128347_125128489_125129576
ONT_simulated_read_4949690	chr1	-	1288	6	ISM	ENSMUSG00000033124.17	ENSMUST00000040689.15	3764	16	1768	5113	1768	-5113	internal_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCCCAGCTCTTCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	75166799	75162622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_75162749_75162833_75163583_75164328_75164471_75164588_75164751_75166206_75166272_75166755
ONT_simulated_read_494995	chr2	-	1305	8	ISM	ENSMUSG00000070730.12	ENSMUST00000094695.12	2249	13	10593	0	10593	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTTTGACTGTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	118976922	118967481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_118968234_118968827_118968909_118969519_118969574_118969832_118969932_118970524_118970603_118970740_118970817_118973108_118973170_118976818
ONT_simulated_read_4951017	chr5	-	752	5	ISM	ENSMUSG00000011831.17	ENST00000540033.2	2870	19	53148	69040	53148	-69040	internal_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGAGGTAAGCTCACGT	NA	NA	NA	NA	NA	NA	NA	NA	107969760	107964647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_107964784_107966754_107966881_107967469_107967545_107968297_107968523_107969570
ONT_simulated_read_4952703	chr3	+	2050	6	ISM	ENSMUSG00000025764.15	ENSMUST00000191952.2	3327	9	26753	1029	26753	-1029	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTCTGCGTGTGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	41546107	41560101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904
ONT_simulated_read_4952796	chr1	-	223	2	ISM	ENSMUSG00000062729.13	ENST00000544598.5	665	6	530	452	530	-452	internal_fragment	FALSE	canonical	NA	NA	NA	NA	139	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCGCCACACAGTTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	171108096	171105081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_171105170_171107961
ONT_simulated_read_4955614	chr12	-	1357	10	ISM	ENSMUSG00000020547.6	ENST00000433922.6	1854	12	26635	281	26635	-281	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTTTCATTTCTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	36180168	36142125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990
ONT_simulated_read_4958716	chr2	+	1209	7	ISM	ENSMUSG00000026821.17	ENSMUST00000113893.8	3683	18	194	7990	7	-7191	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGGAGCACCTCGCGCCT	NA	NA	NA	NA	NA	NA	NA	NA	28423560	28435088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_28423746_28430722_28430834_28432301_28432496_28432902_28432963_28433565_28433760_28434000_28434399_28435021
ONT_simulated_read_4959729	chr6	-	254	1	ISM	ENSMUSG00000030216.13	ENSMUST00000116514.4	2739	12	11029	3297	11029	-3297	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCCAGGTAAGCACCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	136794202	136793948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_136793900_136794200
ONT_simulated_read_4961875	chr15	-	1202	1	ISM	ENSMUSG00000022361.15	ENSMUST00000175805.9	4839	3	27460	581	27460	-279	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTTGACTATGCATGCT	NA	NA	NA	NA	NA	NA	NA	NA	57912181	57910979	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_57911000_57912200
ONT_simulated_read_4961941	chr10	-	1431	3	ISM	ENSMUSG00000039697.17	ENSMUST00000216172.2	2026	6	7351	55	7267	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAACAATTCAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	30524512	30522362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_30523648_30523962_30524037_30524440
ONT_simulated_read_4962188	chr17	-	1078	1	ISM	ENSMUSG00000002504.16	ENSMUST00000019684.13	1717	6	4627	0	4594	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGCCTGTGTGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	24859337	24858259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24858300_24859300
ONT_simulated_read_4965407	chr7	-	1640	7	ISM	ENSMUSG00000035401.10	ENST00000524767.5	4087	21	52129	145	52129	-145	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGACAGCCATGGAGCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	98251930	98239983	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98248958_98249001_98249878_98250035_98251789
ONT_simulated_read_4966079	chr17	-	242	1	NIC	ENSMUSG00000038347.16	novel	1221	5	NA	NA	43771	-930	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAGCAACCCAGGTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	13937869	13937627	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_13937600_13937900
ONT_simulated_read_4968205	chr6	+	459	4	ISM	ENSMUSG00000030208.16	ENSMUST00000111907.2	2763	5	0	3036	0	-1116	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCATCTTCTCCATCATCT	NA	NA	NA	NA	NA	NA	NA	NA	135344490	135357135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_135344705_135354175_135354287_135356898_135356996_135357098
ONT_simulated_read_4970445	chr2	+	1187	6	ISM	ENSMUSG00000026965.13	ENSMUST00000028341.11	3004	13	117	8227	117	-8227	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTGCTAGATCCCTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	25162606	25167700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_25162690_25162926_25163550_25163811_25163945_25164677_25164853_25166327_25166448_25167647
ONT_simulated_read_4971889	chr4	-	2873	1	ISM	ENSMUSG00000028619.16	ENSMUST00000057043.10	6431	5	38789	2731	38524	2647	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCTGCTAATCTACACC	NA	NA	NA	NA	NA	NA	NA	NA	106996955	106994082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_106994100_106997000
ONT_simulated_read_497470	chr5	+	325	1	ISM	ENSMUSG00000004951.11	ENSMUST00000005077.7	903	3	0	1320	0	-1296	mono-exon	FALSE	NA	NA	NA	NA	NA	710	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGCCGAGGGCCCCGCGG	NA	NA	NA	NA	NA	NA	NA	NA	135916772	135917097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_135916800_135917100
ONT_simulated_read_4974986	chr6	-	973	1	ISM	ENSMUSG00000004980.17	ENST00000356674.8	3904	11	6885	1229	6517	477	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTCTTCAATGGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	51440235	51439262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_51439300_51440200
ONT_simulated_read_497567	chr4	-	1043	6	ISM	ENSMUSG00000028530.15	ENSMUST00000102781.10	4906	25	85493	14233	85493	-14233	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTACTCCATGAGCCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	101036986	101023796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_101023847_101028431_101028619_101031282_101031407_101032270_101032429_101034764_101034954_101036651
ONT_simulated_read_4976338	chr5	+	763	1	ISM	ENSMUSG00000029108.15	ENSMUST00000191837.6	8785	3	53	414448	0	-10683	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCGTGGCGCGCAGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	57875361	57876124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_57875400_57876100
ONT_simulated_read_4977655	chr16	+	2407	10	ISM	ENSMUSG00000075254.13	ENSMUST00000126532.2	6714	17	47056	1297	-23949	-688	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTTTCTTTGATGTT	NA	NA	NA	NA	NA	NA	NA	NA	33551970	33588516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_33552089_33555910_33556015_33558594_33558654_33558932_33559094_33562731_33562867_33570821_33570865_33571541_33571580_33581127_33581216_33583811_33583987_33587030
ONT_simulated_read_4980010	chr6	+	1517	1	FSM	ENSMUSG00000107994.2	ENSMUST00000203858.2	1813	1	27	269	27	-269	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGACTCAGAGAGTAAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	115652955	115654472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_115653000_115654500
ONT_simulated_read_4981151	chr14	+	884	5	ISM	ENSMUSG00000040618.8	ENST00000559250.5	1656	9	4	3904	4	-3858	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGGCAAGACCAATCT	NA	NA	NA	NA	NA	NA	NA	NA	55779861	55782401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341
ONT_simulated_read_4982314	chr11	-	1191	1	ISM	ENSMUSG00000057778.15	ENSMUST00000079681.6	2393	4	16922	512	16922	-495	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTACTTGACTTTA	NA	NA	NA	NA	NA	NA	NA	NA	72669760	72668569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_72668600_72669800
ONT_simulated_read_4983415	chr11	-	947	8	ISM	ENSMUSG00000020471.12	ENSMUST00000102922.10	1646	11	3116	573	3116	-573	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGACCCGTTCATCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	5825176	5822752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053
ONT_simulated_read_4985631	chr13	-	1726	7	NIC	ENSMUSG00000021546.19	novel	2626	15	NA	NA	2762	-243	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	910	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATTAACCAGAGTAAACT	NA	NA	NA	NA	NA	NA	NA	NA	58543107	58539393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541889_58541974_58542123_58542179_58542291_58542600_58542978
ONT_simulated_read_4985984	chr1	+	618	1	FSM	ENSMUSG00000094497.2	ENSMUST00000178557.2	483	1	0	-135	0	135	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGAGGCAGATGTGTTA	NA	NA	NA	NA	NA	NA	NA	NA	43228315	43228933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_43228300_43228900
ONT_simulated_read_4986920	chr2	+	536	1	FSM	ENSMUSG00000096729.2	ENSMUST00000099951.3	2493	1	0	1957	0	-956	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATCCAAGAGCTCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	83797656	83798192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_83797700_83798200
ONT_simulated_read_4987098	chr14	-	803	4	ISM	ENSMUSG00000034235.18	ENST00000680396.1	5700	21	24458	28011	24458	-28011	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGGTGAGCATAGAATAG	NA	NA	NA	NA	NA	NA	NA	NA	20633516	20627007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20627381_20627522_20627655_20631524_20631696_20633389
ONT_simulated_read_4988204	chr12	+	468	1	ISM	ENSMUSG00000020564.18	ENSMUST00000146040.9	2973	13	219570	5239	51927	-482	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCTAGTAGCAAAGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	33417322	33417790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_33417300_33417800
ONT_simulated_read_4988400	chr10	+	1241	6	ISM	ENSMUSG00000019978.17	ENST00000524581.5	1796	8	8994	0	8994	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTTTCATTCTTCAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	25377888	25398622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388984_25398194
ONT_simulated_read_49886	chr5	-	1810	3	ISM	ENSMUSG00000029153.12	ENSMUST00000200830.4	2384	6	11243	0	10853	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGCTGGCTTTTTCTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	73485048	73479541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_73481191_73483623_73483742_73485005
ONT_simulated_read_4988925	chr8	-	1038	8	ISM	ENSMUSG00000003575.14	ENST00000601916.1	1438	10	3688	148	3688	-148	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	495	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCGCTGGTCAGTCTCCAA	NA	NA	NA	NA	NA	NA	NA	NA	70857970	70838755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70838986_70840190_70840372_70845571_70845706_70850395_70850605_70850945_70850987_70853268_70853355_70855080_70855176_70857908
ONT_simulated_read_498958	chr9	-	451	2	ISM	ENSMUSG00000074397.6	ENST00000317011.8	495	3	27	418	27	-418	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	863	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCATGCCTGAGCACAG	NA	NA	NA	NA	NA	NA	NA	NA	44346919	44345069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44345321_44346719
ONT_simulated_read_4991195	chr11	-	1911	1	NIC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	25199	-1058	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCCCTCGGGAGAAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	97053508	97051597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_97051600_97053500
ONT_simulated_read_499187	chr4	-	589	7	ISM	ENSMUSG00000028464.17	ENSMUST00000107914.10	1164	9	3851	94	3644	-90	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTTCTGGAACTCAACAAC	NA	NA	NA	NA	NA	NA	NA	NA	43519744	43514804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_43514862_43518229_43518300_43518401_43518465_43519002_43519079_43519226_43519298_43519388_43519507_43519610
ONT_simulated_read_4992854	chr1	+	1695	12	ISM	ENSMUSG00000023150.15	ENSMUST00000023918.13	3511	15	101	3462	60	-3455	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGACACTCAGATGACCTGA	NA	NA	NA	NA	NA	NA	NA	NA	151220328	151236711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682
ONT_simulated_read_499322	chrX	-	2049	19	ISM	ENSMUSG00000031012.18	ENSMUST00000115438.10	8366	26	220305	16260	-99505	-11558	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATGTCCGAGCCACCCTG	NA	NA	NA	NA	NA	NA	NA	NA	13492512	13399578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_13399782_13403824_13403906_13403999_13404081_13410752_13410869_13415403_13415601_13417185_13417222_13418611_13418681_13421116_13421186_13423230_13423317_13425558_13425638_13427753_13427943_13434714_13434796_13437272_13437351_13453082_13453205_13466595_13466696_13474972_13475057_13480708_13480832_13486888_13487065_13492433
ONT_simulated_read_4997650	chr5	-	3231	17	ISM	ENSMUSG00000029415.5	ENSMUST00000031364.5	5020	22	6257	1170	6127	-1170	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAATGTTAGACCACCTA	NA	NA	NA	NA	NA	NA	NA	NA	92451626	92433038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_92434730_92436325_92436488_92437598_92437684_92437779_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446121_92447920_92448023_92449670_92449746_92450497_92450556_92451524
ONT_simulated_read_5000981	chr11	+	610	2	ISM	ENSMUSG00000044629.6	ENSMUST00000058159.6	1654	3	0	24662	0	-24662	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCATCTATGACACAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	17001817	17004709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_17002349_17004630
ONT_simulated_read_5005555	chr4	-	364	1	ISM	ENSMUSG00000028668.6	ENSMUST00000030427.6	4708	11	16108	1924	16108	-1924	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGGGTTTTTTGTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	135732966	135732602	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_135732600_135733000
ONT_simulated_read_5007372	chr13	-	1410	8	ISM	ENSMUSG00000021713.10	ENST00000538977.5	2009	10	5670	1793	5662	-1793	internal_fragment	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATGCTGGATCAAATACC	NA	NA	NA	NA	NA	NA	NA	NA	104359668	104343662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_104343790_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104353788_104356544_104356993_104359345_104359467_104359599
ONT_simulated_read_5009649	chr9	-	679	3	ISM	ENSMUSG00000039952.16	ENSMUST00000171412.7	4415	4	10579	3480	10579	-3480	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATCAGACCCTGGTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	108130356	108086636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_108086861_108095211_108095610_108130299
ONT_simulated_read_5009737	chr6	-	1265	7	ISM	ENSMUSG00000040250.15	ENSMUST00000032427.15	3059	18	22737	0	22238	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	146456596	146451129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_146451484_146451584_146451663_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425
ONT_simulated_read_501046	chr8	-	900	1	ISM	ENSMUSG00000003849.9	ENSMUST00000003947.9	1553	6	14082	0	3886	0	mono-exon	FALSE	NA	NA	NA	NA	NA	629	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGTGGCGCATGCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	108115756	108114856	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_108114900_108115800
ONT_simulated_read_5012563	chrX	-	682	2	ISM	ENSMUSG00000031431.14	ENSMUST00000055738.12	1974	3	1047	934	1047	-111	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGAAGAAGCCACTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	139442889	139441210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_139441857_139442853
ONT_simulated_read_5013222	chr2	-	767	1	ISM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	28368	777	28368	-777	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCCCCCACCCTGGTAG	NA	NA	NA	NA	NA	NA	NA	NA	168768824	168768057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_168768100_168768800
ONT_simulated_read_5017292	chr14	-	1629	18	ISM	ENSMUSG00000021820.19	ENST00000372765.5	1817	20	14739	-9	14703	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	288	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATTGTTTAAAAAAACGGAA	NA	NA	NA	NA	NA	NA	NA	NA	20829331	20786694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20805726_20805771_20807733_20807797_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271
ONT_simulated_read_5019625	chr15	-	1753	1	NIC	ENSMUSG00000022247.13	novel	2664	10	NA	NA	9350	-66	mono-exon	FALSE	NA	NA	NA	NA	NA	688	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTACAGAAATCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	10476683	10474930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_10474900_10476700
ONT_simulated_read_5024816	chr4	+	2120	1	NIC	ENSMUSG00000028248.16	novel	4545	12	NA	NA	26140	-144	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	434	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATGTAGGTGAGCTAACA	NA	NA	NA	NA	NA	NA	NA	NA	21874203	21876323	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_+_21874200_21876300
ONT_simulated_read_5024997	chr3	-	378	1	ISM	ENSMUSG00000015943.12	ENSMUST00000016087.4	729	2	346	275	346	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATACCTGGATTGGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	96104556	96104178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_96104200_96104600
ONT_simulated_read_502528	chr7	+	1047	4	ISM	ENSMUSG00000042606.10	ENSMUST00000037248.10	2766	7	1871	270	1871	-270	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTAATTACTTCATCCA	NA	NA	NA	NA	NA	NA	NA	NA	126463014	126464279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_126463423_126463491_126463658_126463734_126463834_126463905
ONT_simulated_read_5025387	chr1	+	1574	10	ISM	ENSMUSG00000026131.21	ENSMUST00000185269.7	16340	84	97506	37428	97506	-36616	internal_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAGACAGATCAAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	34296916	34310057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_34297022_34299244_34299449_34301100_34301333_34302344_34302572_34303605_34303729_34303830_34303933_34305937_34306040_34307309_34307484_34307815_34307972_34309908
ONT_simulated_read_5027651	chr6	-	362	1	ISM	ENSMUSG00000029553.11	ENSMUST00000031533.11	1787	7	64133	574	11170	-79	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGGCTCAAGACATCAAC	NA	NA	NA	NA	NA	NA	NA	NA	16834307	16833945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_16833900_16834300
ONT_simulated_read_5027702	chr15	-	1049	9	ISM	ENSMUSG00000022570.8	ENSMUST00000229289.2	1223	10	738	105	677	-98	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGGGGAAAGGCCAGACC	NA	NA	NA	NA	NA	NA	NA	NA	75800898	75796629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798973_75800740
ONT_simulated_read_5028401	chr18	+	778	7	ISM	ENSMUSG00000006850.9	ENSMUST00000007046.9	1823	12	99	3686	-5	2514	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTGGTGCCTTCACT	NA	NA	NA	NA	NA	NA	NA	NA	36868219	36871764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_36868310_36868440_36868554_36870509_36870626_36870721_36870906_36871148_36871254_36871414_36871501_36871680
ONT_simulated_read_5028991	chr15	-	604	1	FSM	ENSMUSG00000116093.2	ENSMUST00000230077.2	1240	1	0	636	0	-636	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTTGTCGCTGACAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	91925479	91924875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_91924900_91925500
ONT_simulated_read_5029265	chr11	-	248	1	ISM	ENSMUSG00000001441.14	ENSMUST00000167806.8	2307	18	74397	0	61587	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGGCCTGGTTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	97096915	97096667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97096700_97096900
ONT_simulated_read_5030167	chr12	-	296	1	ISM	ENSMUSG00000002804.5	ENSMUST00000221397.2	1241	5	7074	464	7060	0	mono-exon	FALSE	NA	NA	NA	NA	NA	839	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATAAAGCTTGTGTAAGT	NA	NA	NA	NA	NA	NA	NA	NA	112898670	112898374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_112898400_112898700
ONT_simulated_read_5030966	chr4	-	377	3	ISM	ENSMUSG00000078350.12	ENSMUST00000130175.8	477	4	251	84	0	-83	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTCTTCTGGATCATCT	NA	NA	NA	NA	NA	NA	NA	NA	154110073	154107850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_154107911_154108144_154108349_154109960
ONT_simulated_read_503133	chr3	-	186	1	ISM	ENSMUSG00000039795.15	ENSMUST00000037839.12	1610	8	10418	761	7655	0	mono-exon	FALSE	NA	NA	NA	NA	NA	841	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAATCCTTATAAGCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	10405959	10405773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_10405800_10406000
ONT_simulated_read_5034458	chr11	-	928	1	ISM	ENSMUSG00000038909.17	ENSMUST00000092766.12	3414	15	33754	662	33754	569	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCTCTACTTTCCACACA	NA	NA	NA	NA	NA	NA	NA	NA	95166674	95165746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_95165700_95166700
ONT_simulated_read_5034865	chr6	+	738	5	FSM	ENSMUSG00000053119.12	ENST00000409225.2	1117	5	27	352	-25	-352	multi-exon	FALSE	canonical	NA	NA	NA	NA	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTCCTCCTCTAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	71520875	71556803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_71521018_71537880_71538061_71551098_71551221_71554714_71554830_71556624
ONT_simulated_read_503684	chr10	-	1562	3	ISM	ENSMUSG00000019861.16	ENSMUST00000020008.10	4216	8	32866	1559	32866	-1559	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCCGGGCAAACTGAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	52225305	52214706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_52215950_52222144_52222326_52225167
ONT_simulated_read_5037498	chr14	-	505	4	FSM	ENSMUSG00000022223.10	ENST00000538105.6	738	4	3	230	3	-230	multi-exon	FALSE	canonical	NA	NA	NA	NA	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGCTCCAGCATCTACAA	NA	NA	NA	NA	NA	NA	NA	NA	56137370	56135291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_56135470_56135699_56135844_56137103_56137187_56137270
ONT_simulated_read_5037537	chr5	+	2258	15	ISM	ENSMUSG00000042744.17	ENST00000550722.5	15239	76	85213	48566	85213	-48547	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCTTCATAGCCTGCTAA	NA	NA	NA	NA	NA	NA	NA	NA	121443792	121458093	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_121443928_121444063_121444169_121445004_121445094_121445409_121445586_121446312_121446449_121446555_121446698_121446792_121446960_121448603_121448751_121449685_121449871_121451936_121452091_121452930_121453212_121453379_121453570_121455264_121455347_121456625_121456829_121458027
ONT_simulated_read_503789	chr18	-	1061	1	ISM	ENSMUSG00000024533.18	ENSMUST00000045105.13	5033	15	61188	2264	57719	517	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTACATTTTCCATAACT	NA	NA	NA	NA	NA	NA	NA	NA	67624603	67623542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_67623500_67624600
ONT_simulated_read_5038553	chr17	+	442	4	ISM	ENSMUSG00000067629.14	ENST00000449372.7	3919	18	21582	0	10140	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCCCCACCCCGGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	27181999	27189555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_27182062_27183806_27184013_27185856_27185948_27189472
ONT_simulated_read_5039341	chr12	-	889	1	NIC	ENSMUSG00000056459.15	novel	451	3	NA	NA	5804	-424	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTCTTCGAAAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	76397031	76396142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_76396100_76397000
ONT_simulated_read_5040313	chr7	+	2000	15	ISM	ENSMUSG00000041187.17	ENST00000433867.5	3156	19	5789	236	5644	-236	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCGACGACGCACGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	16582633	16603815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_16582805_16582905_16583132_16583949_16584028_16584118_16584273_16587179_16587298_16587875_16587954_16589619_16589879_16590184_16590238_16590750_16590824_16591675_16591783_16592303_16592466_16597865_16597965_16599611_16599880_16603412_16603499_16603747
ONT_simulated_read_5044334	chr19	-	1055	1	ISM	ENSMUSG00000024978.12	ENSMUST00000235957.2	6172	22	56172	2354	28407	-256	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCCAAACTTCCTGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	55059476	55058421	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_55058400_55059500
ONT_simulated_read_5046580	chr9	-	1401	8	FSM	ENSMUSG00000032186.16	ENST00000435126.6	1420	8	19	0	19	0	multi-exon	TRUE	canonical	NA	NA	NA	NA	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAACATGGGGAGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	75504664	75480964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_75481406_75483927_75484073_75484390_75484535_75493329_75493461_75495171_75495259_75499844_75499968_75502202_75502360_75504491
ONT_simulated_read_504764	chr7	-	254	2	ISM	ENSMUSG00000061702.11	ENSMUST00000108405.2	550	4	4460	0	4417	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACATCGCCCAGAAACGAG	NA	NA	NA	NA	NA	NA	NA	NA	25370055	25368666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_25368776_25369910
ONT_simulated_read_5054357	chr6	-	1194	4	ISM	ENSMUSG00000004263.16	ENSMUST00000088357.12	4433	10	11107	391	11107	-391	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGGGAAGAAGGGACAGAC	NA	NA	NA	NA	NA	NA	NA	NA	124722380	124719897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124720069_124720192_124720374_124720710_124720855_124721682
ONT_simulated_read_505595	chr19	-	1409	10	ISM	ENSMUSG00000005986.17	ENSMUST00000056888.13	2139	15	2433	0	2331	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGCTGTCCTGCGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	4330730	4320207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4320578_4320821_4320914_4320993_4321158_4321246_4321364_4321469_4321628_4322597_4322729_4322827_4322890_4323048_4323131_4323563_4323631_4330564
ONT_simulated_read_505685	chr7	+	847	7	ISM	ENSMUSG00000073838.11	ENSMUST00000098048.6	1679	10	1325	304	1308	-304	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTGGCACTGGCCTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	126087857	126089595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088723_126088876_126088963_126089084_126089492
ONT_simulated_read_5056851	chr8	+	1170	8	ISM	ENSMUSG00000012889.9	ENSMUST00000093380.5	2090	10	0	1704	0	-371	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCCTGGTAATGCCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	84852617	84857452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_84852731_84852834_84853057_84853856_84853951_84854226_84854292_84854413_84854524_84855198_84855356_84855892_84856009_84857159
ONT_simulated_read_5057717	chr12	+	292	2	ISM	ENSMUSG00000032705.10	ENSMUST00000038185.10	3310	9	125	22169	125	-22168	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCCAGAGCATCCACAGC	NA	NA	NA	NA	NA	NA	NA	NA	80509993	80522727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_80510055_80522496
ONT_simulated_read_5058010	chr14	+	1119	12	FSM	ENSMUSG00000021843.18	ENST00000555573.5	1451	12	80	252	80	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGACACCTTCAGAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	47952133	47973736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971728_47973556
ONT_simulated_read_5059220	chr7	-	1093	13	ISM	ENSMUSG00000030718.10	ENSMUST00000032963.10	2772	14	16984	1056	16984	-1056	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGCTGTCTCCTCCTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	100004530	99976999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_99977090_99978241_99978310_99981064_99981130_99983134_99983180_99984254_99984385_99987576_99987701_99990237_99990304_99991052_99991144_99994158_99994314_99997011_99997064_99997328_99997387_100003915_100004009_100004474
ONT_simulated_read_5059319	chr16	-	571	7	ISM	ENSMUSG00000000028.16	ENSMUST00000096990.10	1747	18	4220	14668	4220	-14668	internal_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGGAGTTCCTTGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	18626156	18613870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029
ONT_simulated_read_5061271	chr3	-	237	2	ISM	ENSMUSG00000028062.16	ENST00000368304.9	372	3	366	47	342	-47	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTAGAAAAGGGATGATGA	NA	NA	NA	NA	NA	NA	NA	NA	88459824	88457237	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_88457312_88459661
ONT_simulated_read_50627	chr9	+	892	4	ISM	ENSMUSG00000010066.16	ENSMUST00000085092.12	5183	39	126777	1132	126588	397	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAAAAGGAAAGATGGT	NA	NA	NA	NA	NA	NA	NA	NA	107403855	107405060	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_107404014_107404135_107404246_107404352_107404436_107404519
ONT_simulated_read_5062936	chr2	-	1041	9	ISM	ENSMUSG00000026941.17	ENST00000317446.7	3321	25	-8	4754	-8	-4754	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCCCCAGGTCCCTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	25460266	25458296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25458371_25458469_25458559_25458641_25458780_25458970_25459097_25459240_25459326_25459397_25459529_25459705_25459832_25459918_25460093_25460168
ONT_simulated_read_5067221	chr10	-	566	2	ISM	ENSMUSG00000039531.9	ENST00000368573.5	959	4	18	13558	18	-13558	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATGTGTGGGCTTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	33825464	33819730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_33819757_33824924
ONT_simulated_read_5068171	chr8	-	641	1	NIC	ENSMUSG00000031758.11	novel	2411	7	NA	NA	157609	0	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCGGTAAGCTCTTGACTA	NA	NA	NA	NA	NA	NA	NA	NA	117302027	117301386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_117301400_117302000
ONT_simulated_read_5069417	chr10	-	172	1	ISM	ENSMUSG00000038417.5	ENSMUST00000043814.5	3282	23	114561	356	114387	0	mono-exon	FALSE	NA	NA	NA	NA	NA	312	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAGAGACGGCCTCGAGG	NA	NA	NA	NA	NA	NA	NA	NA	41064695	41064523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_41064500_41064700
ONT_simulated_read_5070974	chr1	-	407	1	NIC	ENSMUSG00000073481.10	novel	1917	8	NA	NA	31997	-410	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGGCCGGTCTTGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	184546081	184545674	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_184545700_184546100
ONT_simulated_read_5072859	chr2	+	400	4	ISM	ENSMUSG00000047250.14	ENSMUST00000062069.6	2867	11	0	14579	0	-13696	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGTTCACCCATTTCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	36120437	36127705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_36120582_36120679_36120776_36127218_36127336_36127662
ONT_simulated_read_5073805	chr11	+	1847	8	ISM	ENSMUSG00000034177.16	ENSMUST00000092800.12	4037	9	0	3960	0	-881	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGACTTTGACCCCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	87555099	87622405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_87555694_87609203_87609327_87617975_87618051_87618161_87618294_87618851_87618957_87620225_87620388_87620957_87621061_87621852
ONT_simulated_read_5073931	chr11	-	1081	1	ISM	ENSMUSG00000020496.11	ENSMUST00000094151.6	1949	4	5548	0	5548	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1771	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTTTCCATACCTCCT	NA	NA	NA	NA	NA	NA	NA	NA	58824194	58823113	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_58823100_58824200
ONT_simulated_read_5075306	chr13	+	560	1	NIC	ENSMUSG00000039219.19	novel	5783	23	NA	NA	100391	-933	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTATCTTTCTCTAGGGA	NA	NA	NA	NA	NA	NA	NA	NA	14338774	14339334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_+_14338800_14339300
ONT_simulated_read_5075796	chr3	-	783	4	ISM	ENSMUSG00000028116.14	ENSMUST00000029761.14	1181	6	8782	114	8782	-114	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGCCATTGGAGTTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	122819882	122799968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_122800267_122807248_122807433_122810197_122810328_122819711
ONT_simulated_read_5078839	chr7	-	493	1	ISM	ENSMUSG00000032875.9	ENSMUST00000107032.3	10190	21	58533	3330	21116	-947	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGAGAGCTCTCTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	100522781	100522288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_100522300_100522800
ONT_simulated_read_5079273	chr9	-	1673	1	ISM	ENSMUSG00000025894.12	ENSMUST00000051589.9	2843	6	12628	374	12628	-374	mono-exon	FALSE	NA	NA	NA	NA	NA	375	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATTGCTAATCCCCATTT	NA	NA	NA	NA	NA	NA	NA	NA	4296839	4295166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_4295200_4296800
ONT_simulated_read_5080489	chr3	-	711	7	ISM	ENSMUSG00000054942.14	ENSMUST00000199334.5	4024	14	43165	2163	25258	-2163	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGCTTTTAAAAACAGCT	NA	NA	NA	NA	NA	NA	NA	NA	152002855	151989376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_151989473_151990838_151990974_151993141_151993241_151994692_151994780_151996096_151996170_151996427_151996547_152002753
ONT_simulated_read_508157	chr7	+	2141	17	ISM	ENSMUSG00000030835.7	ENST00000610363.4	3506	30	24605	-194	24605	-139	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACCCTGCTGAACACAAT	NA	NA	NA	NA	NA	NA	NA	NA	45707879	45733339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_45707977_45710302_45710391_45711192_45711257_45712390_45712487_45715585_45715805_45715883_45715967_45717802_45717963_45718095_45718223_45719346_45719461_45720198_45720327_45721921_45722064_45725498_45725583_45727449_45727561_45728914_45729017_45730818_45730939_45732658_45732752_45733026
ONT_simulated_read_508239	chr8	-	493	1	ISM	ENSMUSG00000031681.17	ENSMUST00000066091.14	3099	7	59746	885	59746	-885	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCTTTCATCAGGCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	80066401	80065908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_80065900_80066400
ONT_simulated_read_508413	chr16	-	634	3	FSM	ENSMUSG00000034473.15	ENST00000481965.6	633	3	0	-1	0	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGGTAAGAAAACTTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	35182131	35134290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_35134658_35139173_35139240_35181930
ONT_simulated_read_5085511	chr11	+	896	7	ISM	ENSMUSG00000017390.16	ENSMUST00000102478.4	1700	8	126	805	126	-626	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGAGTGAAGAGGAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	78215151	78216781	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_78215340_78215429_78215642_78215734_78215790_78215874_78216036_78216154_78216239_78216467_78216643_78216760
ONT_simulated_read_5087073	chr6	+	367	1	FSM	ENSMUSG00000068396.10	ENSMUST00000121998.2	354	1	51	-64	51	64	mono-exon	FALSE	NA	NA	NA	NA	NA	252	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	71101644	71102011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_71101600_71102000
ONT_simulated_read_5089165	chr14	-	2382	1	ISM	ENSMUSG00000039376.14	ENSMUST00000057090.12	4394	4	5880	1099	2148	-627	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTTTCTCTCTGTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	20712494	20710112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20710100_20712500
ONT_simulated_read_5090314	chr4	+	837	1	ISM	ENSMUSG00000025743.15	ENSMUST00000070478.4	4973	5	32044	902	32044	-902	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTGGGCCCTGGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	130551891	130552728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_130551900_130552700
ONT_simulated_read_5091115	chr11	-	497	3	NIC	ENSMUSG00000020831.19	novel	880	6	NA	NA	708	-42	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACATTTTTATACAGAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	70127796	70126075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_70126291_70126849_70127038_70127702
ONT_simulated_read_5091443	chr18	+	1708	8	ISM	ENSMUSG00000024590.9	ENSMUST00000025486.9	2843	11	0	10195	0	-10195	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAGATGATCAGAAAAATT	NA	NA	NA	NA	NA	NA	NA	NA	56840884	56876301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_56841547_56861472_56861630_56862358_56862485_56864041_56864213_56866283_56866410_56872892_56873114_56873758_56873985_56876282
ONT_simulated_read_5091940	chr10	-	1012	12	ISM	ENSMUSG00000052798.14	ENST00000378905.6	2621	26	11997	15046	11979	-15046	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACAGTAAGTAAAGGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	117616624	117601811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582
ONT_simulated_read_5093137	chr3	+	780	5	ISM	ENSMUSG00000038712.17	ENSMUST00000168223.2	1812	9	0	3494	0	-3488	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGTAGAGAAGATCATCAC	NA	NA	NA	NA	NA	NA	NA	NA	95195258	95199980	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935
ONT_simulated_read_509574	chr12	+	1670	15	ISM	ENSMUSG00000020608.8	ENSMUST00000020931.6	5603	27	315	28226	72	3905	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCCATTGAATCTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	11316201	11341560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526
ONT_simulated_read_5096122	chr11	-	955	1	ISM	ENSMUSG00000020922.12	ENSMUST00000107156.9	2015	4	21062	716	21062	-716	mono-exon	FALSE	NA	NA	NA	NA	NA	352	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTCTTCACGGTACTAG	NA	NA	NA	NA	NA	NA	NA	NA	102054993	102054038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_102054000_102055000
ONT_simulated_read_5096614	chr16	-	2105	12	ISM	ENSMUSG00000033149.18	ENSMUST00000076333.12	5347	19	63895	900	30027	-900	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATCAGAGTTGCTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	45600702	45567656	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_45568295_45569089_45569176_45571708_45571929_45577461_45577609_45578479_45578571_45583272_45583478_45591034_45591135_45592497_45592639_45594525_45594709_45595330_45595451_45598075_45598166_45600618
ONT_simulated_read_5100594	chr1	-	2709	12	ISM	ENSMUSG00000026608.14	ENSMUST00000085678.8	3706	18	11315	357	11315	-357	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGCTTTAGGAGCCGCT	NA	NA	NA	NA	NA	NA	NA	NA	188728722	188703648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_188704881_188706262_188706402_188706483_188706669_188708807_188708905_188710693_188710850_188713421_188713593_188715206_188715324_188715403_188715492_188719712_188719829_188724759_188724951_188727938_188728030_188728596
ONT_simulated_read_5102476	chr1	+	822	4	ISM	ENSMUSG00000049339.17	ENSMUST00000190240.7	2438	10	2510	733	2510	-733	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCCACTCTGCCTGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	75121947	75123820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_75121998_75122323_75122460_75123073_75123364_75123474
ONT_simulated_read_5102782	chr2	-	279	3	ISM	ENSMUSG00000041997.17	ENSMUST00000038584.9	4280	20	73398	36828	73398	-36828	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTAATATGTCATGGGA	NA	NA	NA	NA	NA	NA	NA	NA	70582674	70579578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_70579672_70580778_70580869_70582578
ONT_simulated_read_5103264	chr15	-	1790	9	ISM	ENSMUSG00000022387.18	ENSMUST00000109381.9	5152	13	20226	2537	16764	-1275	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAGACCAAGTCCGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	88598210	88573773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585474_88591236_88591498_88596818_88597132_88597500_88597630_88598088
ONT_simulated_read_5104181	chr2	+	340	3	ISM	ENSMUSG00000037523.14	ENSMUST00000041362.12	2867	7	0	7607	0	-7607	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACTGCAGATCTGTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	131075986	131082338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_131076048_131080655_131080831_131082234
ONT_simulated_read_5104382	chr13	-	454	1	NIC	ENSMUSG00000021764.9	novel	1698	5	NA	NA	99391	-619	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGAAATTCTTTTGTCAT	NA	NA	NA	NA	NA	NA	NA	NA	114425403	114424949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_114424900_114425400
ONT_simulated_read_510458	chr18	-	319	1	ISM	ENSMUSG00000033323.15	ENSMUST00000036229.13	3713	13	60957	461	32050	26	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATACGTGATGTCTGGTC	NA	NA	NA	NA	NA	NA	NA	NA	80451953	80451634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_80451600_80452000
ONT_simulated_read_510478	chr11	+	2527	1	ISM	ENSMUSG00000018379.18	ENSMUST00000139129.9	5362	4	2039	1817	1609	448	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATAAATCTTTTCAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	87940237	87942764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_87940200_87942800
ONT_simulated_read_51085	chr10	-	369	3	ISM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	22132	22482	22132	-21929	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACATTTTTGACAGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	115065240	115056258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_115056314_115057487_115057591_115065029
ONT_simulated_read_5108832	chr10	-	1088	6	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	42785	48876	42785	-48876	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAGCCTGTGGCAGACTC	NA	NA	NA	NA	NA	NA	NA	NA	75557365	75530821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_75530881_75535746_75535930_75549286_75549466_75551432_75551585_75553271_75553533_75557111
ONT_simulated_read_5109284	chrX	-	803	7	ISM	ENSMUSG00000002010.18	ENST00000217901.10	1170	11	5837	-27	5837	27	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	257	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAGGACTCTCTTCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	72824637	72822648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503
ONT_simulated_read_5109944	chr5	-	1399	1	ISM	ENSMUSG00000002221.12	ENSMUST00000002291.12	5850	21	49069	1003	49069	-1003	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCATTACAGATGGTAATG	NA	NA	NA	NA	NA	NA	NA	NA	27947479	27946080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_27946100_27947500
ONT_simulated_read_5113266	chr16	-	1345	4	ISM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	87464	392	66955	-389	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTTGCCTGACCCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	20157680	20150444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625
ONT_simulated_read_5115826	chr7	-	970	6	ISM	ENSMUSG00000005611.16	ENSMUST00000125758.8	5953	20	21842	31453	21842	-28675	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGAAGAGAACACGGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	110523552	110498931	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_110499022_110501459_110501491_110504633_110504758_110520520_110520600_110522667_110523280_110523518
ONT_simulated_read_5115829	chr7	-	591	1	NIC	ENSMUSG00000059981.13	novel	4274	19	NA	NA	12633	-1330	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGAAGAGGCAGCGGCATG	NA	NA	NA	NA	NA	NA	NA	NA	126470813	126470222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_126470200_126470800
ONT_simulated_read_5116200	chr16	+	776	4	ISM	ENSMUSG00000022811.18	ENST00000492394.5	2944	8	-15	40600	0	-40355	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGAGACTGTGCTAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	33201232	33277371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_33201398_33247563_33247700_33254995_33255345_33277245
ONT_simulated_read_5118461	chr7	-	870	6	ISM	ENSMUSG00000030421.10	ENST00000360605.8	1459	10	27025	1704	27025	-1704	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGAGAGAACAGCGTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	37669122	37662072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_37662135_37662817_37662958_37664655_37665005_37666745_37666915_37668804_37668863_37669030
ONT_simulated_read_5118638	chr17	+	963	1	ISM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	43874	548	43874	-548	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGAGTTGAAACTCTAAAG	NA	NA	NA	NA	NA	NA	NA	NA	29923442	29924405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_29923400_29924400
ONT_simulated_read_5119692	chr18	+	1433	14	ISM	ENSMUSG00000024410.16	ENST00000590868.5	1923	18	10782	-9	10782	9	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAATAAAGTACCTACAAC	NA	NA	NA	NA	NA	NA	NA	NA	12312626	12323031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
ONT_simulated_read_5120431	chr2	-	542	1	ISM	ENSMUSG00000002107.19	ENSMUST00000170438.8	8856	12	338250	6500	174867	35	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGCCTCAGAAATACTGGA	NA	NA	NA	NA	NA	NA	NA	NA	6551557	6551015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_6551000_6551600
ONT_simulated_read_5120435	chr7	-	728	5	ISM	ENSMUSG00000002968.10	ENSMUST00000208253.2	3693	18	11285	1451	11258	1168	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGAGCATGCCTACGTGC	NA	NA	NA	NA	NA	NA	NA	NA	44530530	44527639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44527715_44529350_44529529_44529675_44529895_44529990_44530063_44530346
ONT_simulated_read_51215	chr9	-	2221	10	ISM	ENSMUSG00000039607.18	ENSMUST00000111773.10	7908	15	446994	4460	446648	93	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATCTGAGACCCAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	116634537	116406273	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_116407771_116411805_116411934_116415085_116415164_116456957_116457006_116465436_116465548_116507714_116507766_116510198_116510296_116524887_116524935_116548383_116548491_116634480
ONT_simulated_read_5124252	chr8	+	884	9	ISM	ENSMUSG00000031446.15	ENSMUST00000016680.14	3728	20	119	20211	0	3507	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGAAACAGCTGTTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	13155739	13177729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_13155904_13156193_13156310_13165469_13165574_13171676_13171747_13172806_13172881_13173466_13173630_13173869_13173960_13174790_13174874_13177709
ONT_simulated_read_5125766	chr1	-	3113	20	ISM	ENSMUSG00000034088.16	ENSMUST00000186164.7	3808	25	11332	-240	11332	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGCCCTCTTCCTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	93357182	93335483	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099
ONT_simulated_read_5126799	chr10	+	631	4	ISM	ENSMUSG00000006728.13	ENSMUST00000006911.12	2053	8	69	2982	0	-1299	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCAAGCTGGCTGACTTTG	NA	NA	NA	NA	NA	NA	NA	NA	126899471	126900807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703
ONT_simulated_read_512749	chr2	-	1101	11	ISM	ENSMUSG00000053141.17	ENST00000373198.8	5112	25	229675	27887	229675	-27887	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGCGATTGACACCATG	NA	NA	NA	NA	NA	NA	NA	NA	161540026	161397443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_161397470_161400739_161400895_161402088_161402206_161406546_161406645_161408044_161408082_161417645_161417723_161429466_161429555_161449177_161449369_161498061_161498211_161528988_161529019_161539893
ONT_simulated_read_5128101	chr16	-	1448	5	ISM	ENSMUSG00000022661.15	ENSMUST00000163230.8	2347	6	8741	710	8563	-662	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTGGCCTTGCTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	45220675	45203207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_45203821_45212607_45212752_45214955_45215229_45217331_45217659_45220584
ONT_simulated_read_5129906	chr16	+	1248	10	ISM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	64	6516	64	-6516	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTGCTGTGGGATGTGG	NA	NA	NA	NA	NA	NA	NA	NA	20470465	20475648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617
ONT_simulated_read_5130003	chr3	-	1456	1	FSM	ENSMUSG00002076967.1	ENSMUST00020182038.1	138	1	0	-1318	0	1318	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTTCCCTGAGTGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	96153279	96151823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_96151800_96153300
ONT_simulated_read_5130597	chr9	+	1567	12	ISM	ENSMUSG00000009741.16	ENSMUST00000084885.12	3850	17	0	10638	0	-8822	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGACTGTTCTCTAATTTT	NA	NA	NA	NA	NA	NA	NA	NA	113760001	113795629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_113760288_113760596_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559
ONT_simulated_read_5130648	chr2	-	1087	3	ISM	ENSMUSG00000038605.12	ENSMUST00000060173.9	2164	5	1876	607	1876	-607	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCCTATTCCCTGGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	181239129	181237617	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_181238399_181238539_181238681_181238964
ONT_simulated_read_5131813	chr14	-	1179	1	FSM	ENSMUSG00000115801.2	ENSMUST00000226445.2	93147	1	23663	68305	23663	-68305	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAACTGGAGAAAATAGGTAA	NA	NA	NA	NA	NA	NA	NA	NA	44850995	44849816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_44849800_44851000
ONT_simulated_read_5132166	chrX	-	231	1	NIC	ENSMUSG00000079641.4	novel	612	3	NA	NA	2652	0	mono-exon	FALSE	NA	NA	NA	NA	NA	470	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	36346403	36346172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_36346200_36346400
ONT_simulated_read_5133247	chr11	-	172	1	ISM	ENSMUSG00000020475.4	ENSMUST00000020768.4	840	3	1922	0	1922	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCACGTTTCATATAGCT	NA	NA	NA	NA	NA	NA	NA	NA	5751811	5751639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_5751600_5751800
ONT_simulated_read_513621	chr17	-	575	5	ISM	ENSMUSG00000024426.18	ENSMUST00000056034.13	1930	10	1084	1514	1084	-1514	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGCCTGCAAGTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	36219853	36212257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744
ONT_simulated_read_513657	chr9	-	1063	1	ISM	ENSMUSG00000032553.15	ENSMUST00000035157.10	3064	7	11716	1327	11716	-1327	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGGGGAGAGCAGGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	103067620	103066557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_103066600_103067600
ONT_simulated_read_5141018	chr1	-	972	3	ISM	ENSMUSG00000026273.14	ENSMUST00000027492.14	1366	4	832	280	780	-280	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGGAAGAGGAGGAGCTAC	NA	NA	NA	NA	NA	NA	NA	NA	93232805	93229206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_93229518_93230439_93230625_93232329
ONT_simulated_read_5145229	chr11	-	1219	1	ISM	ENSMUSG00000032633.13	ENSMUST00000102697.10	3437	13	17205	185	16777	-185	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTAGCAGCCTTCAGATGA	NA	NA	NA	NA	NA	NA	NA	NA	59683637	59682418	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_59682400_59683600
ONT_simulated_read_5145296	chr17	-	1152	6	ISM	ENSMUSG00000063576.13	ENST00000244670.12	1821	10	3586	4	3499	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	NA	NA	NA	NA	NA	NA	NA	46988230	46985475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030
ONT_simulated_read_5146197	chr19	-	1443	1	ISM	ENSMUSG00000034321.15	ENSMUST00000112123.4	2296	6	9352	337	9094	-337	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGGAGGTGAGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	41912510	41911067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_41911100_41912500
ONT_simulated_read_5147300	chr13	-	2046	6	ISM	ENSMUSG00000034928.17	ENST00000274811.9	4111	11	4835	949	4835	-947	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCTGCTGCCTCAGGGAT	NA	NA	NA	NA	NA	NA	NA	NA	54830764	54828173	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601
ONT_simulated_read_5149354	chr2	-	1000	8	ISM	ENSMUSG00000026727.11	ENSMUST00000028059.9	1546	9	392	331	-3	-148	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	137	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTGTGGTAGGTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	13275834	13082153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721
ONT_simulated_read_5150307	chr5	-	1858	10	ISM	ENSMUSG00000029405.17	ENSMUST00000167918.8	4232	11	10304	2126	33	228	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCATTAACATTGAAATCT	NA	NA	NA	NA	NA	NA	NA	NA	92221112	92202130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018
ONT_simulated_read_5151033	chr18	-	893	1	ISM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	33912	2271	33838	257	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCAAGGATCTATTTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	9996229	9995336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_9995300_9996200
ONT_simulated_read_5151866	chr2	+	781	3	ISM	ENSMUSG00000005505.13	ENSMUST00000090682.4	2437	4	26	2995	26	-2995	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAACAGAGGCAATAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	90735112	90737910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_90735254_90736009_90736628_90737888
ONT_simulated_read_515272	chr4	-	561	1	ISM	ENSMUSG00000028497.13	ENSMUST00000030221.3	2089	7	24602	834	24602	-834	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATAAAACTTGGCTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	88332561	88332000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_88332000_88332600
ONT_simulated_read_5152855	chr14	+	764	5	ISM	ENSMUSG00000040618.8	ENSMUST00000226352.2	2784	11	78	5348	61	-4326	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCAGCGGCTATGGTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	55777923	55781933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851
ONT_simulated_read_5154256	chr14	-	683	4	ISM	ENSMUSG00000021929.10	ENSMUST00000022496.9	4069	17	69112	2155	69112	-2155	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCTGACAACTGCAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	61608211	61604814	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_61605179_61605576_61605672_61607831_61607995_61608150
ONT_simulated_read_5155593	chr2	+	784	6	ISM	ENSMUSG00000017760.17	ENST00000372459.7	1752	14	3128	134	3128	-97	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	212	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCCTGACCTCCCCGACT	NA	NA	NA	NA	NA	NA	NA	NA	164679101	164681367	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ONT_simulated_read_5156513	chr2	-	410	1	NIC	ENSMUSG00000076437.12	novel	747	4	NA	NA	550	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACTTGTAGTTAAGGTT	NA	NA	NA	NA	NA	NA	NA	NA	84500448	84500038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_84500000_84500400
ONT_simulated_read_5157607	chr11	+	956	8	ISM	ENSMUSG00000052915.15	ENST00000579565.5	1399	10	3374	134	552	-134	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCAGGTTGGAGATCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	98690031	98696203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_98690190_98690825_98691209_98693093_98693142_98693607_98693673_98694728_98694797_98695127_98695253_98695672_98695746_98696167
ONT_simulated_read_5158144	chr18	-	1742	1	ISM	ENSMUSG00000043079.18	ENSMUST00000097566.10	5060	3	19861	8761	5630	-2525	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTATGCCCGCCGCCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	60737547	60735805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_60735800_60737500
ONT_simulated_read_5158255	chr16	-	374	3	ISM	ENSMUSG00000022542.8	ENST00000396693.9	1070	8	8039	103	8039	-103	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	207	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTAGGCTCCTTCCCTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	4806440	4805298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4805523_4805610_4805663_4806342
ONT_simulated_read_5166223	chr17	-	1431	6	ISM	ENSMUSG00000024083.17	ENSMUST00000024888.15	4531	9	15121	1824	15121	-1810	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCACGTAATAAACTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	64604905	64589824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833_64600020_64604718
ONT_simulated_read_5166463	chr11	-	695	7	ISM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	2682	2181	2682	-2181	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACACAAGGAGACATGAAC	NA	NA	NA	NA	NA	NA	NA	NA	106144223	106142148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114
ONT_simulated_read_5169609	chr15	-	637	1	ISM	ENSMUSG00000037525.6	ENSMUST00000040313.6	1276	2	3675	340	3675	-340	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAGCTTTAACACGGAG	NA	NA	NA	NA	NA	NA	NA	NA	99368936	99368299	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_99368300_99368900
ONT_simulated_read_5171735	chr11	-	286	1	ISM	ENSMUSG00000078771.11	ENSMUST00000170799.8	2289	2	2005	1751	1984	-1751	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCCACCCTCCCTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	79419430	79419144	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_79419100_79419400
ONT_simulated_read_5173133	chr7	-	862	3	ISM	ENSMUSG00000054499.10	ENSMUST00000058702.7	1828	5	2207	488	2207	-487	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGCCTTGGGGGCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	24917077	24902752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_24903357_24910573_24910724_24916969
ONT_simulated_read_5174275	chr9	-	153	1	ISM	ENSMUSG00000002032.18	ENSMUST00000114705.9	2649	7	810	4479	810	-3064	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGACGCCTTCTCTGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	44709703	44709550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44709600_44709700
ONT_simulated_read_51759	chr13	-	252	2	ISM	ENSMUSG00000021384.15	ENST00000375469.5	456	4	1715	85	1715	-85	internal_fragment	FALSE	canonical	NA	NA	NA	NA	942	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGGCAATGGTGGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	49392412	49390984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_49391089_49392264
ONT_simulated_read_5176971	chr18	-	216	2	ISM	ENSMUSG00000036585.17	ENST00000407758.5	494	3	11580	98	11580	-98	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTAAGCGCGGTCCTCG	NA	NA	NA	NA	NA	NA	NA	NA	38980198	38975057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_38975175_38980099
ONT_simulated_read_5177714	chr8	+	1636	3	ISM	ENSMUSG00000031749.13	ENSMUST00000117534.8	2177	6	36	7460	36	-7460	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCTCTCACGGAACAGGC	NA	NA	NA	NA	NA	NA	NA	NA	111646589	111688995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_111646738_111683389_111684683_111688800
ONT_simulated_read_5177727	chr9	+	533	5	ISM	ENSMUSG00000004100.13	ENSMUST00000004203.6	1670	11	0	2342	0	-2342	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCCTCCCCTCCTGGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	20799470	20801132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_20799614_20799702_20799874_20800633_20800736_20800929_20800981_20801066
ONT_simulated_read_5178955	chr10	+	1797	13	ISM	ENSMUSG00000069601.15	ENSMUST00000182692.8	3833	21	48304	19302	47666	-10978	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGGGAAGATCGAAGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	69809628	69840485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69837752_69838062_69838340_69838432_69840439
ONT_simulated_read_5181470	chr17	+	719	5	ISM	ENSMUSG00000041057.11	ENSMUST00000047086.10	3450	18	0	26960	0	-26960	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTTCTGATGGGATTACA	NA	NA	NA	NA	NA	NA	NA	NA	71923209	71939066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999
ONT_simulated_read_5181780	chr7	+	1222	1	ISM	ENSMUSG00000090330.3	ENSMUST00000169914.2	1465	2	199	150	199	-150	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCCTGGTAAGGAGACAGA	NA	NA	NA	NA	NA	NA	NA	NA	24928310	24929532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_24928300_24929500
ONT_simulated_read_5182910	chr3	-	244	1	FSM	ENSMUSG00000069008.4	ENSMUST00000091117.4	1252	1	0	1008	0	-1008	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTGAACTCAAATCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	58011668	58011424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_58011400_58011700
ONT_simulated_read_5183273	chr10	-	1318	8	ISM	ENSMUSG00000034602.16	ENSMUST00000170935.9	5302	34	49855	18248	49855	-18248	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGAAACCTTTCCGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	122862075	122849713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_122849896_122850845_122851045_122852167_122852462_122853979_122854143_122856208_122856385_122858738_122858850_122859814_122859917_122861984
ONT_simulated_read_518333	chr17	+	183	2	ISM	ENSMUSG00000023959.11	ENSMUST00000024755.7	5862	6	48522	38093	48263	-34156	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTGACCTTCAATGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	44547992	44552966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_44548130_44552920
ONT_simulated_read_5183604	chr10	-	571	5	ISM	ENSMUSG00000019795.18	ENSMUST00000159917.8	2491	8	18873	1555	18873	-1555	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCAGTGGGCCGCTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	7520194	7506699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_7506741_7513772_7513990_7515808_7515895_7516458_7516580_7520088
ONT_simulated_read_5183925	chr10	+	751	6	ISM	ENSMUSG00000037846.19	ENSMUST00000118160.8	3970	12	35	38263	7	-36693	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTCCATCAGCAAAGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	67815434	67841435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_67815643_67823136_67823343_67833394_67833454_67837753_67837808_67839033_67839152_67841329
ONT_simulated_read_5184277	chr5	-	554	4	ISM	ENSMUSG00000000568.16	ENSMUST00000112939.10	1670	8	11531	2994	11531	-2990	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTGGAGGTAAGCTGTAAC	NA	NA	NA	NA	NA	NA	NA	NA	100115245	100111850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_100111943_100112528_100112661_100113880_100114043_100115077
ONT_simulated_read_5184850	chr6	+	1057	6	ISM	ENSMUSG00000036371.7	ENSMUST00000203436.3	1667	8	33	6367	5	-6075	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGGTTAAAATTGTTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	67243999	67254923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249802_67249923_67254744
ONT_simulated_read_518667	chr19	+	624	7	ISM	ENSMUSG00000080268.5	ENST00000425825.6	1175	9	229	866	229	-866	internal_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCTGTCAGCTTGGTAG	NA	NA	NA	NA	NA	NA	NA	NA	5096148	5099075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020
ONT_simulated_read_5191993	chr11	+	754	7	ISM	ENSMUSG00000018372.14	ENSMUST00000018516.11	2696	20	0	13774	0	-13713	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGGTTTTCTTTCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	106680100	106695905	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_106680204_106681556_106681686_106683302_106683411_106686948_106687060_106690869_106690970_106692288_106692405_106695818
ONT_simulated_read_5192786	chrX	-	448	1	Genic_Genomic	ENSMUSG00000031095.16	novel	NA	NA	NA	NA	30809	5	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATTTAAAGATACTTAAAC	NA	NA	NA	NA	NA	NA	NA	NA	37622593	37622145	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chrX_-_37622100_37622600
ONT_simulated_read_5193018	chr9	-	966	2	ISM	ENSMUSG00000036986.17	ENST00000354026.10	1390	4	4	5038	4	-5038	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	697	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGTTTCGAGGAGTTCA	NA	NA	NA	NA	NA	NA	NA	NA	58154707	58141700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_58142217_58154257
ONT_simulated_read_5194365	chr7	-	638	5	ISM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	29397	11228	15855	5585	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGAGCCTGGCGATAGGG	NA	NA	NA	NA	NA	NA	NA	NA	143124396	143122671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278
ONT_simulated_read_5196783	chr4	-	1022	8	ISM	ENSMUSG00000028455.16	ENST00000452248.6	1196	9	347	47	347	-47	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1083	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAAACTGTCCTCATTGA	NA	NA	NA	NA	NA	NA	NA	NA	43031109	43028025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43030048_43030151_43030239_43030299_43030435_43030536_43030970
ONT_simulated_read_5197711	chr16	-	1842	1	NIC	ENSMUSG00000022636.14	novel	6036	16	NA	NA	200818	-810	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGTTTTGTTTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	52072010	52070168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_52070200_52072000
ONT_simulated_read_5205686	chr19	-	1136	2	ISM	ENSMUSG00000024782.8	ENST00000447596.4	638	4	21572	-895	21572	895	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCACTACACAACAGGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	29003731	28999330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_29000347_29003611
ONT_simulated_read_5205943	chr2	-	317	1	Genic_Genomic	ENSMUSG00000027239.15	novel	NA	NA	NA	NA	1573	5	mono-exon	FALSE	NA	NA	NA	NA	NA	747	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTTCCCAGTTTGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	91760460	91760143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr2_-_91760100_91760500
ONT_simulated_read_5207330	chr9	+	395	2	ISM	ENSMUSG00000015656.18	ENST00000419827.2	1938	8	2563	4	2563	-4	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	2625	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTCAGTCCAAGAAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	40715779	40716410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_40715992_40716227
ONT_simulated_read_5209912	chr10	-	1276	6	ISM	ENSMUSG00000061032.10	ENSMUST00000062678.11	1984	13	7757	0	6204	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	428	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTGCTTCTCCCATTT	NA	NA	NA	NA	NA	NA	NA	NA	78241120	78236219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_78236819_78237683_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758
ONT_simulated_read_5210566	chr6	-	593	2	ISM	ENSMUSG00000038456.10	ENST00000492720.5	2541	13	19	43052	19	-43052	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	121	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGACAGCCAGAGCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	39504479	39500164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_39500694_39504415
ONT_simulated_read_521123	chr1	-	606	1	ISM	ENSMUSG00000026709.11	ENSMUST00000035430.4	3619	17	28769	683	28339	379	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTACAAGTAACAGAATTCTA	NA	NA	NA	NA	NA	NA	NA	NA	160869459	160868853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_160868900_160869500
ONT_simulated_read_5213322	chr17	-	602	3	ISM	ENSMUSG00000049760.7	ENSMUST00000052832.6	755	4	769	0	769	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGTAGCTTGGATAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	56916002	56914451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56914842_56915637_56915693_56915845
ONT_simulated_read_5216516	chr7	+	1452	8	ISM	ENSMUSG00000030822.16	ENSMUST00000033095.10	2402	11	411	932	411	-932	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATGAGTGAGTATAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	127071072	127074998	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928
ONT_simulated_read_5216550	chrX	-	2151	7	ISM	ENSMUSG00000046873.19	ENSMUST00000058098.15	4797	11	25728	1972	25663	-1972	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTAGAGGTGAACTTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	156355983	156332791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854
ONT_simulated_read_5217943	chr13	-	898	1	NIC	ENSMUSG00000021638.13	novel	1278	8	NA	NA	42263	96	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGTATGTGAAATTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	100635423	100634525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_100634500_100635400
ONT_simulated_read_5217953	chr8	-	1111	8	NIC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	1148	-441	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGACAGATGGAGCATCAT	NA	NA	NA	NA	NA	NA	NA	NA	83499641	83490690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83499508
ONT_simulated_read_5218926	chr7	-	666	4	FSM	ENSMUSG00000003190.13	ENST00000614495.4	865	4	200	-1	-154	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	1914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTATTTTTTGTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	44647157	44640741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_44640879_44645967_44646111_44646301_44646417_44646886
ONT_simulated_read_5223543	chr17	+	1714	14	ISM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	176	644	176	-644	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTGACCCAGGACCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	21165748	21185534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500
ONT_simulated_read_5223853	chr19	+	1340	8	ISM	ENSMUSG00000034820.5	ENST00000448745.5	1739	9	5886	233	5820	-233	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	358	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTGATCAGGACTAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	10509190	10523101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_10509364_10510183_10510288_10510656_10510803_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ONT_simulated_read_5224073	chr18	+	1056	12	ISM	ENSMUSG00000024474.8	ENSMUST00000007042.6	1996	20	39	4185	39	-3865	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTCTACAACCAAGACACC	NA	NA	NA	NA	NA	NA	NA	NA	36877747	36886507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479
ONT_simulated_read_5224089	chr6	+	728	7	ISM	ENSMUSG00000041477.15	ENST00000280665.11	1809	9	9	5222	0	-5222	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAGCCCTCCCGGACCTT	NA	NA	NA	NA	NA	NA	NA	NA	119152248	119191808	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430_119183560_119191730
ONT_simulated_read_52243	chr17	-	717	2	ISM	ENSMUSG00000004945.16	ENSMUST00000005053.14	948	4	6683	0	6683	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	277	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGGGGGCGTGTGTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	5483835	5461144	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_5461743_5483716
ONT_simulated_read_5224444	chr10	+	473	1	FSM	ENSMUSG00000064317.6	ENSMUST00000072739.6	309	1	0	-164	0	164	mono-exon	FALSE	NA	NA	NA	NA	NA	479	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTATTAATTTATTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	78229153	78229626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_78229200_78229600
ONT_simulated_read_5225699	chr9	-	1355	9	ISM	ENSMUSG00000050471.18	ENSMUST00000121564.8	1962	10	685	533	685	-533	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGCCTGGTCCAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	35178388	35128848	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35156436_35156492_35178332
ONT_simulated_read_5225816	chr17	-	2192	18	ISM	ENSMUSG00000052752.16	ENSMUST00000088464.12	2504	20	2610	178	2610	-178	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAACTCACAGATCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	24735572	24728001	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478
ONT_simulated_read_5228842	chr9	-	1253	1	ISM	ENSMUSG00000032437.11	ENSMUST00000035010.10	4221	16	66395	193	66395	-193	mono-exon	FALSE	NA	NA	NA	NA	NA	250	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGCTTTAGTGGGACAG	NA	NA	NA	NA	NA	NA	NA	NA	115073094	115071841	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_115071800_115073100
ONT_simulated_read_5230709	chr1	-	845	7	ISM	ENSMUSG00000026019.16	ENSMUST00000117438.8	3251	14	347	10278	-152	-10278	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGTGGAATGTAGAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	60137457	60126304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137301
ONT_simulated_read_52317	chr6	+	602	3	ISM	ENSMUSG00000030271.15	ENSMUST00000032406.15	1549	7	139	4858	139	-4858	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGGCCTTTGGACCTCGA	NA	NA	NA	NA	NA	NA	NA	NA	113304071	113306291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_113304324_113305325_113305574_113306189
ONT_simulated_read_5232233	chr11	-	526	1	FSM	ENSMUSG00000091478.3	ENSMUST00000081241.2	411	1	0	-115	0	115	mono-exon	FALSE	NA	NA	NA	NA	NA	584	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGCCTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	100252952	100252426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_100252400_100253000
ONT_simulated_read_5236773	chr14	-	628	8	NIC	ENSMUSG00000033885.16	novel	1659	17	NA	NA	46339	-11	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGATTGGACAATGCATTT	NA	NA	NA	NA	NA	NA	NA	NA	14325179	14309687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_14309775_14314427_14314488_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061
ONT_simulated_read_5241760	chr11	-	1019	1	ISM	ENSMUSG00000025170.14	ENSMUST00000106107.3	1861	6	30989	119	30932	-119	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGCCAGCATTGTTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	121248088	121247069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_121247100_121248100
ONT_simulated_read_5243093	chr8	+	1246	5	ISM	ENSMUSG00000031913.10	ENSMUST00000034388.10	2178	11	11033	0	11033	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	153	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTACTGGAGTCGTCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	107768886	107772387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_107768973_107769245_107769328_107769543_107769764_107771086_107771228_107771670
ONT_simulated_read_5246638	chr10	-	920	3	ISM	ENSMUSG00000019961.18	ENST00000266732.8	2957	5	5459	2287	5122	-2283	internal_fragment	FALSE	canonical	NA	NA	NA	NA	182	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTTAGCCAGTCCAGCTA	NA	NA	NA	NA	NA	NA	NA	NA	91001903	90998561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_90999224_90999904_91000064_91001804
ONT_simulated_read_5248377	chr6	-	1223	2	ISM	ENSMUSG00000038648.6	ENSMUST00000041093.6	7082	12	107571	4236	107571	-4236	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGGATACTGTCTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	37311510	37308425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_37309436_37311297
ONT_simulated_read_5253825	chr14	-	520	3	ISM	ENSMUSG00000007589.10	ENSMUST00000007733.8	2956	9	947	2247	872	-2247	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCAGTCTGCACGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	55918330	55917569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55917914_55918067_55918165_55918251
ONT_simulated_read_525507	chr11	-	1056	7	FSM	ENSMUSG00000020159.9	ENST00000519385.5	1085	7	30	-1	30	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	975	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCATTGAACTCTTGCATC	NA	NA	NA	NA	NA	NA	NA	NA	33522463	33502537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_33502843_33504967_33505121_33506929_33507068_33513865_33513949_33517212_33517431_33518066_33518135_33522372
ONT_simulated_read_5255093	chr3	-	1821	8	ISM	ENSMUSG00000041263.15	ENSMUST00000166687.6	1922	9	304	0	-179	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATATGTGTCCCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	88997048	88991287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_88991958_88994079_88994203_88995025_88995576_88996106_88996154_88996306_88996413_88996483_88996659_88996791_88996869_88996975
ONT_simulated_read_5256413	chr2	-	1181	1	ISM	ENSMUSG00000037376.15	ENSMUST00000039554.7	2828	11	10442	225	10442	-225	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCTTGTTCCCTTGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	132647532	132646351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_132646400_132647500
ONT_simulated_read_5257348	chrX	-	1972	20	ISM	ENSMUSG00000031012.18	ENST00000645986.2	4519	27	507	28187	-3	-27454	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCAGGGTAAACTGGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	13712327	13415474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_13415601_13417185_13417222_13418611_13418681_13421116_13421186_13423230_13423317_13425558_13425638_13427753_13427943_13434714_13434796_13437272_13437351_13453082_13453205_13466595_13466696_13474972_13475057_13480708_13480832_13486888_13487065_13492433_13492537_13543823_13543897_13549209_13549288_13580904_13581011_13652175_13652289_13712246
ONT_simulated_read_5260955	chr12	+	1158	1	ISM	ENSMUSG00000021023.15	ENSMUST00000021411.15	3122	7	649	78053	0	-77977	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCTCTGTGTCTTTCATA	NA	NA	NA	NA	NA	NA	NA	NA	55350070	55351228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_55350100_55351200
ONT_simulated_read_5262328	chr5	-	1077	1	ISM	ENSMUSG00000043614.14	ENSMUST00000067935.11	1544	4	4287	3	4287	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGATGCCCCGCCTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	135102833	135101756	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_135101800_135102800
ONT_simulated_read_5264195	chr12	-	988	1	ISM	ENSMUSG00000002688.9	ENST00000331968.11	3507	18	306758	0	306758	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGTGTCATACTAATCAA	NA	NA	NA	NA	NA	NA	NA	NA	50389001	50388013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_50388000_50389000
ONT_simulated_read_5268739	chr1	+	605	1	NIC	ENSMUSG00000026439.15	novel	2456	14	NA	NA	26298	-153	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGCAGGAAAGGAAGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	132431470	132432075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_+_132431500_132432100
ONT_simulated_read_5269920	chr12	-	229	1	FSM	ENSMUSG00000034168.8	ENSMUST00000038422.8	4098	1	0	3869	0	-3869	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTCGTGTGTCTTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	86931572	86931343	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_86931300_86931600
ONT_simulated_read_5270287	chr17	-	258	1	ISM	ENSMUSG00000023885.10	ENST00000366787.7	4076	21	22771	1764	22771	-1749	mono-exon	FALSE	NA	NA	NA	NA	NA	693	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCATTCCGCTGTGTTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	14887776	14887518	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_14887500_14887800
ONT_simulated_read_5270727	chr5	+	274	2	ISM	ENSMUSG00000029376.9	ENSMUST00000071652.6	2159	8	0	74459	0	13488	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGGGAGATAACCCAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	91079138	91094768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_91079293_91094648
ONT_simulated_read_527543	chr17	+	1956	15	ISM	ENSMUSG00000036552.20	ENSMUST00000097393.11	2535	18	0	4378	0	-4378	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTACTGAAGAAGCAGAACT	NA	NA	NA	NA	NA	NA	NA	NA	15261469	15279734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605
ONT_simulated_read_5275508	chr11	+	1458	11	ISM	ENSMUSG00000017686.18	ENSMUST00000017831.16	3029	20	33492	726	33492	-726	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCTTAGGAGCCAAATATA	NA	NA	NA	NA	NA	NA	NA	NA	80133436	80156867	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80146687_80146784_80156567
ONT_simulated_read_5282759	chr19	+	2443	20	ISM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	383	4607	87	-4100	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTCCTGCAAGTTGGGTA	NA	NA	NA	NA	NA	NA	NA	NA	10583073	10602576	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530
ONT_simulated_read_5285732	chr10	-	1808	5	ISM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	9048	431	9048	-431	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCTTTCTGTAGAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	82590930	82584965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798
ONT_simulated_read_5288528	chr6	+	1472	7	ISM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	38392	0	38392	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTATACAGTGTTGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	124678381	124681381	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
ONT_simulated_read_5288841	chr16	+	1042	11	ISM	ENSMUSG00000022770.18	ENST00000436682.6	2349	17	20088	14156	19446	-13736	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGAGCAGTGGCAGAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	31503083	31676863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_31503113_31561923_31562089_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31666453_31666488_31672660_31672703_31675258_31675310_31676364_31676467_31676709
ONT_simulated_read_5289467	chr7	+	601	5	ISM	ENSMUSG00000059070.17	ENSMUST00000209287.2	1027	6	1105	-7	1105	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTGTGTTCATTCATGAA	NA	NA	NA	NA	NA	NA	NA	NA	45368685	45370259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
ONT_simulated_read_5290385	chr11	-	319	1	ISM	ENSMUSG00000086283.8	ENSMUST00000154798.8	1045	4	3987	315	3987	-315	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACAGAGTGAGTTCCAGGC	NA	NA	NA	NA	NA	NA	NA	NA	102511255	102510936	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_102510900_102511300
ONT_simulated_read_5291967	chr1	+	326	1	ISM	ENSMUSG00000042115.5	ENSMUST00000046071.5	4269	5	0	8406	0	-8406	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGTGGGGTGGGCTCCGAG	NA	NA	NA	NA	NA	NA	NA	NA	132226363	132226689	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_132226400_132226700
ONT_simulated_read_5292101	chr5	-	1279	8	ISM	ENSMUSG00000029422.16	ENSMUST00000182955.8	1685	11	5726	40	5726	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACCCACTTCCATTAAAC	NA	NA	NA	NA	NA	NA	NA	NA	123881708	123867069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700
ONT_simulated_read_5293476	chr4	-	466	3	ISM	ENSMUSG00000028329.14	ENSMUST00000030013.12	955	6	11870	0	11870	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGATGCAGTCTTCACAGA	NA	NA	NA	NA	NA	NA	NA	NA	46184441	46175221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_46175416_46183117_46183236_46184287
ONT_simulated_read_5294434	chr15	+	273	2	ISM	ENSMUSG00000055024.13	ENST00000674155.1	8251	30	40796	23617	40796	-23617	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGGATACAAAGGAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	81511625	81512656	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_81511736_81512493
ONT_simulated_read_5294849	chr4	+	313	3	ISM	ENSMUSG00000028614.15	ENSMUST00000139560.8	4584	18	268	44990	268	-44990	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACAGGTAGGTTTCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	107225248	107228553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_107225346_107225953_107226075_107228458
ONT_simulated_read_5295264	chr8	-	2003	4	ISM	ENSMUSG00000038506.14	ENSMUST00000110838.8	2955	6	9448	405	9150	-405	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGGTCTGCAATACATTC	NA	NA	NA	NA	NA	NA	NA	NA	13328683	13306368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_13307977_13308946_13309044_13321589_13321721_13328516
ONT_simulated_read_5296466	chr3	+	479	4	ISM	ENSMUSG00000019710.14	ENSMUST00000121920.8	1115	6	-6	1229	-6	-1219	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCCCTTGCTTCATCACC	NA	NA	NA	NA	NA	NA	NA	NA	87826863	87829750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_87826959_87829123_87829356_87829437_87829534_87829694
ONT_simulated_read_5299348	chr11	-	407	3	ISM	ENSMUSG00000020899.17	ENSMUST00000021282.12	6373	28	15442	6542	15442	-6542	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTGCTGTGTCTGAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	68883844	68883064	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_68883237_68883480_68883613_68883741
ONT_simulated_read_5300396	chr11	-	651	4	ISM	ENSMUSG00000020321.17	ENST00000409908.5	699	5	11946	-44	11946	44	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	333	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGTCTATCATGTTGTTA	NA	NA	NA	NA	NA	NA	NA	NA	21509875	21507298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698
ONT_simulated_read_5300496	chr5	-	1156	1	ISM	ENSMUSG00000037979.14	ENSMUST00000036206.14	2473	4	26144	707	26144	-707	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTTACCAAGCAGCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	124913344	124912188	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_124912200_124913300
ONT_simulated_read_5300969	chr19	-	405	1	NIC	ENSMUSG00000117905.2	novel	3709	16	NA	NA	5974	-15927	mono-exon	FALSE	NA	NA	NA	NA	NA	253	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCATGTATCCTCTATTG	NA	NA	NA	NA	NA	NA	NA	NA	4235072	4234667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_4234700_4235100
ONT_simulated_read_5301689	chr9	+	1412	9	NIC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	-405	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGCTCTGGATTCACC	NA	NA	NA	NA	NA	NA	NA	NA	59563855	59586067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_59563933_59572482_59572650_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ONT_simulated_read_5301837	chr9	+	2949	24	FSM	ENSMUSG00000032115.15	ENST00000621959.4	3063	24	17	97	17	92	multi-exon	TRUE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAGCTCTATGGGTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	44291825	44302491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
ONT_simulated_read_5303965	chr5	-	1250	7	ISM	ENSMUSG00000029096.16	ENSMUST00000087629.10	2750	9	11376	562	11066	-562	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGCCTCAACCTCTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	35825750	35809928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_35810467_35811414_35811511_35812887_35812937_35821306_35821422_35822757_35822791_35823393_35823589_35825526
ONT_simulated_read_530636	chr16	-	674	5	ISM	ENSMUSG00000022898.14	ENST00000476950.5	775	6	14065	0	14065	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	437	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCAGTCCAGGCCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	94313233	94302393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_94302547_94302940_94303092_94305160_94305236_94311596_94311747_94313088
ONT_simulated_read_5306764	chr10	+	657	7	ISM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	0	353	0	-353	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	408	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGTCATGTCGCAAGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	127871443	127884149	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113
ONT_simulated_read_5307704	chr16	-	684	7	ISM	ENSMUSG00000013539.15	ENSMUST00000115628.10	1622	9	19591	1924	4	-1323	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTACAGCCAATTCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	18142315	18120614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220
ONT_simulated_read_5312451	chrX	-	819	5	ISM	ENSMUSG00000025257.6	ENSMUST00000026288.5	1508	8	6704	526	6704	-526	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACACAACGACAAGAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	150792587	150788103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520
ONT_simulated_read_5312690	chr11	+	1584	9	NIC	ENSMUSG00000056938.17	novel	2075	11	NA	NA	-12	1	intron_retention	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	NA	NA	NA	NA	NA	NA	NA	102993899	103003026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_102993923_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ONT_simulated_read_5316454	chr2	-	610	2	ISM	ENSMUSG00000015335.17	ENSMUST00000081838.7	1187	5	1801	174	1801	-174	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACAGAACCCCCCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	29981846	29981136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_29981579_29981678
ONT_simulated_read_5317784	chr3	-	1277	1	ISM	ENSMUSG00000068921.15	ENSMUST00000090938.11	4760	13	26525	1810	26062	1022	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTACAACCCCATCCTAC	NA	NA	NA	NA	NA	NA	NA	NA	88831196	88829919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_88829900_88831200
ONT_simulated_read_532020	chr19	+	1347	12	ISM	ENSMUSG00000083282.4	ENST00000310325.10	1714	13	506	72	506	21	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCTTTCCTCTAGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	4905787	4910640	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4905825_4906097_4906337_4906539_4906616_4907997_4908112_4908214_4908361_4908443_4908541_4908619_4908701_4909430_4909551_4909629_4909695_4909785_4909877_4910277_4910337_4910418
ONT_simulated_read_5321999	chr13	-	439	4	ISM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	8330	14144	8330	4044	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTCATCAACATTAAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	99644718	99572097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_99572210_99578141_99578283_99580721_99580805_99644615
ONT_simulated_read_5326177	chr9	-	398	4	ISM	ENSMUSG00000001948.11	ENSMUST00000002013.11	696	5	1725	110	1725	-110	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGTAAAGAAGATGAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	37523293	37514695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_37514783_37517088_37517167_37518912_37518984_37523131
ONT_simulated_read_53287	chr12	+	2049	15	NIC	ENSMUSG00000073079.7	novel	2061	15	NA	NA	17	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGATAAGTTAAAGGGTTCG	NA	NA	NA	NA	NA	NA	NA	NA	55127310	55160052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_+_55127522_55135954_55136065_55136920_55137013_55142599_55142705_55143893_55143961_55144040_55144099_55146697_55146849_55148124_55148274_55148607_55148709_55149252_55149340_55151975_55152050_55152401_55152511_55155286_55155458_55157870_55157967_55159584
ONT_simulated_read_5330326	chr3	+	566	6	ISM	ENSMUSG00000042613.10	ENST00000368460.7	860	8	-23	903	9	-903	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGACGGAGGGGCCGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	89344021	89352821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89344088_89346823_89346909_89350428_89350556_89350758_89350824_89350902_89351063_89352758
ONT_simulated_read_5331513	chr10	+	1606	3	ISM	ENSMUSG00000025354.6	ENSMUST00000217745.2	4133	7	29	5170	29	-3414	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGGGCAGCTTGGGACATT	NA	NA	NA	NA	NA	NA	NA	NA	128641451	128649958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_128641553_128642036_128643490_128649906
ONT_simulated_read_5331524	chr5	-	1522	11	ISM	ENSMUSG00000035325.17	ENST00000505472.5	4133	27	25265	546	25265	-158	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTCTCCACAGCATCGCCA	NA	NA	NA	NA	NA	NA	NA	NA	100530706	100510069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100523819_100523913_100526686_100526861_100529018_100529193_100530620
ONT_simulated_read_5331714	chr19	-	510	3	ISM	ENSMUSG00000059734.8	ENSMUST00000236801.2	1005	7	1418	4	1418	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1033	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACCTGTTGTGTTGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	3961070	3958866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_3959075_3959152_3959282_3960897
ONT_simulated_read_5336033	chr7	+	1104	7	ISM	ENSMUSG00000040734.15	ENST00000360957.10	2338	11	-21	4606	0	-4606	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCGCCGCTCTTTGGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	19095140	19105210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_19095242_19102470_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129
ONT_simulated_read_533612	chr19	-	449	2	ISM	ENSMUSG00000018821.4	ENSMUST00000018965.4	1044	3	4045	394	4045	-394	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	263	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCAAACACTGCAGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	42113453	42112105	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_42112288_42113186
ONT_simulated_read_5337143	chr1	-	612	5	ISM	ENSMUSG00000041926.16	ENSMUST00000077340.14	2288	11	16802	396	16802	-396	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTACCACGCCATGATG	NA	NA	NA	NA	NA	NA	NA	NA	135195020	135190845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_135190868_135191790_135191934_135192920_135193146_135194607_135194717_135194907
ONT_simulated_read_5338915	chr17	+	958	1	ISM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	43818	609	43818	-609	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACCAGAGAAACAGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	29923386	29924344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_29923400_29924300
ONT_simulated_read_5339627	chr16	+	448	4	FSM	ENSMUSG00000005982.15	ENST00000576916.5	663	4	49	166	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATTGGGGCAGCCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	3702632	3719803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_3702671_3712232_3712349_3715114_3715245_3719639
ONT_simulated_read_534055	chr11	-	813	8	ISM	ENSMUSG00000018574.15	ENSMUST00000102574.10	2168	20	3809	0	3788	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	137	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCGTGAATGTCACTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	69902425	69901008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361
ONT_simulated_read_5343676	chr6	-	653	1	ISM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	40550	1700	40547	-1700	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTATTGTTGGAAGATTG	NA	NA	NA	NA	NA	NA	NA	NA	39314059	39313406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_39313400_39314100
ONT_simulated_read_5343912	chr16	-	879	1	ISM	ENSMUSG00000012114.18	ENSMUST00000232645.2	3105	17	70669	145	70595	-132	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCCTTCGGAATACTGCA	NA	NA	NA	NA	NA	NA	NA	NA	17470095	17469216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17469200_17470100
ONT_simulated_read_5347831	chr19	+	838	9	ISM	ENSMUSG00000042729.12	ENST00000311713.11	1124	10	3	720	3	-720	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCCTATTAGCCTCATGT	NA	NA	NA	NA	NA	NA	NA	NA	8713208	8717248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8716867_8717182
ONT_simulated_read_5348009	chr10	-	456	2	ISM	ENSMUSG00000039531.9	ENSMUST00000218055.2	2180	11	23637	0	21864	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGTTTCTTGTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	33803618	33795137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_33795372_33803396
ONT_simulated_read_534803	chr1	-	1151	12	ISM	ENSMUSG00000025909.17	ENSMUST00000115488.3	1554	17	126094	83	126094	-71	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTCTGTTTTTAGGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	8748073	8433781	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_8433858_8484426_8484538_8515250_8515344_8518203_8518357_8533617_8533690_8535660_8535778_8624948_8624988_8653428_8653559_8665635_8665767_8677293_8677377_8695002_8695106_8748030
ONT_simulated_read_5348667	chr3	-	269	1	ISM	ENSMUSG00000040269.6	ENSMUST00000042148.6	783	3	121504	0	121504	0	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGCCGTGGTTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	8867474	8867205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_8867200_8867500
ONT_simulated_read_5349452	chr2	+	398	2	ISM	ENSMUSG00000026833.19	ENST00000277415.15	963	4	7	6275	7	-6269	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCGCCCCCCAGCAGACC	NA	NA	NA	NA	NA	NA	NA	NA	28083155	28098168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_28083475_28098089
ONT_simulated_read_5350738	chr4	+	1205	8	ISM	ENSMUSG00000028309.15	ENSMUST00000029989.11	4154	21	18197	797	18197	-796	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTCTCTTCGCCAGTAGCG	NA	NA	NA	NA	NA	NA	NA	NA	49650262	49656090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_49650328_49651430_49651549_49652521_49652672_49653064_49653278_49654190_49654317_49654446_49654588_49655410_49655513_49655800
ONT_simulated_read_5356056	chr5	-	1874	9	ISM	ENSMUSG00000041890.18	ENSMUST00000086564.11	2984	20	25193	0	25165	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGATGTCTCCATAATGT	NA	NA	NA	NA	NA	NA	NA	NA	114886330	114867635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881791_114881942_114883489_114883633_114886244
ONT_simulated_read_5356078	chr19	-	423	1	ISM	ENSMUSG00000018821.4	ENSMUST00000018965.4	1044	3	5244	120	5244	-120	mono-exon	FALSE	NA	NA	NA	NA	NA	327	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATCTCTGCATCTCACT	NA	NA	NA	NA	NA	NA	NA	NA	42112254	42111831	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_42111800_42112300
ONT_simulated_read_5356198	chr3	+	535	2	ISM	ENSMUSG00000001419.18	ENSMUST00000107558.9	1767	11	25680	-418	25680	418	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAGTGGACTGAAACCCA	NA	NA	NA	NA	NA	NA	NA	NA	88075558	88076380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_88075652_88075938
ONT_simulated_read_5356346	chr8	-	375	1	FSM	ENSMUSG00000090334.2	ENSMUST00000164712.2	375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTTTTTTATAAAGATTT	NA	NA	NA	NA	NA	NA	NA	NA	18707005	18706630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_18706600_18707000
ONT_simulated_read_5356592	chr19	-	893	11	ISM	ENSMUSG00000025027.19	ENSMUST00000237294.2	2956	20	21986	6395	21985	-5853	internal_fragment	FALSE	canonical	NA	NA	NA	NA	881	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCCTTGTGGGATTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	52998591	52985478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498
ONT_simulated_read_5356861	chr5	-	895	2	ISM	ENSMUSG00000043059.17	ENSMUST00000031562.11	2213	3	1280	798	1280	-798	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCCCGCTGTCCATACG	NA	NA	NA	NA	NA	NA	NA	NA	31358106	31357124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_31357492_31357578
ONT_simulated_read_535880	chr6	-	1678	12	ISM	ENSMUSG00000012535.15	ENST00000482320.5	3537	24	43902	-70	43743	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATAGACACACACCAGCAT	NA	NA	NA	NA	NA	NA	NA	NA	29565855	29541499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662
ONT_simulated_read_5359408	chr15	+	1466	11	ISM	ENSMUSG00000022550.19	ENSMUST00000162503.8	2040	15	17080	100	17049	-100	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAGGCTCCAGTGTAGA	NA	NA	NA	NA	NA	NA	NA	NA	76477637	76479916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
ONT_simulated_read_5360955	chr14	-	971	5	ISM	ENSMUSG00000021816.12	ENSMUST00000022355.11	3074	13	25843	1039	25771	-1039	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCTTTAAAAGGATGGAT	NA	NA	NA	NA	NA	NA	NA	NA	20570737	20551136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20551731_20558691_20558790_20559483_20559569_20565590_20565669_20570621
ONT_simulated_read_5362694	chr3	-	1082	1	ISM	ENSMUSG00000028126.17	ENSMUST00000107236.9	3618	15	46811	453	46497	-414	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGGGCAGTGCATGGTG	NA	NA	NA	NA	NA	NA	NA	NA	94967375	94966293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_94966300_94967400
ONT_simulated_read_5363569	chr10	-	2039	1	ISM	ENSMUSG00000037031.11	ENSMUST00000047883.11	3638	8	43113	704	43113	-704	mono-exon	FALSE	NA	NA	NA	NA	NA	543	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTACCATCTTGCCACCTT	NA	NA	NA	NA	NA	NA	NA	NA	62023917	62021878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62021900_62023900
ONT_simulated_read_5363810	chr5	-	491	1	ISM	ENSMUSG00000053553.12	ENSMUST00000066052.12	1429	5	99797	476	99797	-476	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGGGGACTCCTACAT	NA	NA	NA	NA	NA	NA	NA	NA	139346460	139345969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_139346000_139346500
ONT_simulated_read_5364961	chr7	-	1765	10	ISM	ENSMUSG00000030557.18	ENSMUST00000076325.12	2664	11	22948	742	22931	-476	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTATATGTACATGCAT	NA	NA	NA	NA	NA	NA	NA	NA	66999658	66884528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_66884977_66886271_66886399_66890061_66890189_66901404_66901593_66914612_66914673_66915690_66915911_66917814_66917953_66945122_66945327_66966539_66966731_66999596
ONT_simulated_read_5367759	chr1	+	947	8	ISM	ENSMUSG00000026150.15	ENSMUST00000162003.8	2087	11	4324	666	43	-22	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCACATATATTGTCTCA	NA	NA	NA	NA	NA	NA	NA	NA	82706992	82729449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_82707158_82708833_82709004_82713139_82713229_82714733_82714809_82719538_82719698_82724803_82724864_82728240_82728326_82729305
ONT_simulated_read_5370279	chr4	-	508	6	ISM	ENSMUSG00000028873.17	ENST00000373055.6	830	10	12890	-20	12890	20	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACACACAGTGGCAGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	124817590	124812768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509
ONT_simulated_read_5371028	chr17	+	855	12	FSM	ENSMUSG00000024069.15	ENST00000435660.5	1521	12	1	665	1	-665	multi-exon	TRUE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATGGTCCTTGCTCATGT	NA	NA	NA	NA	NA	NA	NA	NA	74708906	74730053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_74708994_74710998_74711084_74712679_74712723_74714215_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74730011
ONT_simulated_read_537103	chr10	+	1503	13	NIC	ENSMUSG00000058799.17	novel	1350	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATACTTGGAGTAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	111309087	111332224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_+_111309213_111317140_111317178_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111330031_111330155_111330655_111330686_111331185_111331237_111331900
ONT_simulated_read_5371606	chr14	+	534	5	ISM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	7659	4933	7578	-4933	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGATTGCCTCCTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	29707952	29710243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145
ONT_simulated_read_5371626	chr7	+	1441	9	ISM	ENSMUSG00000030822.16	ENSMUST00000033095.10	2402	11	2133	276	2133	-276	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTTCCTCGATCCCGGC	NA	NA	NA	NA	NA	NA	NA	NA	127072794	127075654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
ONT_simulated_read_5374482	chr2	+	1194	1	ISM	ENSMUSG00000027331.16	ENSMUST00000134661.8	4602	9	20072	2428	19842	1110	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGAGGAGGAGGAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	118664555	118665749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_118664600_118665700
ONT_simulated_read_5376482	chr10	+	1476	9	ISM	ENSMUSG00000019978.17	ENSMUST00000218903.2	4115	18	0	44384	0	-33951	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATTTCTACATTAAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	25235753	25355027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_25235880_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906
ONT_simulated_read_5376600	chr9	+	849	3	ISM	ENSMUSG00000034973.17	ENSMUST00000034987.15	8933	37	35734	32835	35734	-31656	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAACACTTGGTTGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	86403193	86405024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_86403913_86404815_86404928_86405006
ONT_simulated_read_5383805	chr8	-	652	3	ISM	ENSMUSG00000035569.18	ENSMUST00000098333.5	7995	13	17291	11625	17291	-94	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGAGGCTGTCAGCACAC	NA	NA	NA	NA	NA	NA	NA	NA	123625435	123622514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123622896_123623298_123623447_123625312
ONT_simulated_read_538457	chr18	-	2151	14	ISM	ENSMUSG00000041482.18	ENST00000580640.5	8335	54	268486	73193	268486	24779	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGCTTATCAATTGTGCC	NA	NA	NA	NA	NA	NA	NA	NA	63250854	63217811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_63217951_63219234_63219361_63219648_63219826_63223950_63224112_63225873_63226089_63226454_63226488_63232123_63232166_63235091_63235266_63239248_63239398_63241045_63241342_63242935_63243060_63246948_63247180_63247971_63248121_63250719
ONT_simulated_read_5385197	chr9	-	569	1	NIC	ENSMUSG00000004936.9	novel	2436	11	NA	NA	66832	-461	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAATGAGCATCAGAACG	NA	NA	NA	NA	NA	NA	NA	NA	64094081	64093512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_64093500_64094100
ONT_simulated_read_5387427	chr15	-	467	6	ISM	ENSMUSG00000050891.11	ENST00000630259.1	752	9	12420	-1	12419	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	NA	NA	NA	NA	NA	NA	NA	58788179	58772822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125
ONT_simulated_read_5388841	chr5	-	867	1	ISM	ENSMUSG00000029600.11	ENSMUST00000031599.9	1573	3	2665	0	2415	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGTAGTGTGTTACTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	120747989	120747122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_120747100_120748000
ONT_simulated_read_5391178	chrX	+	1024	8	ISM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	30200	1355	30200	-1355	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATCTCTCTCAAGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	150829623	150844335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288
ONT_simulated_read_5394052	chr4	-	1198	2	ISM	ENSMUSG00000028879.5	ENSMUST00000030698.5	2934	9	27149	921	27149	-921	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATCAAACTCTGTGTAGT	NA	NA	NA	NA	NA	NA	NA	NA	132584671	132581732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_132582870_132584610
ONT_simulated_read_5394750	chrX	-	1165	9	ISM	ENSMUSG00000031400.11	ENSMUST00000004327.11	2652	13	1043	1376	1043	-1376	internal_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAATGAGGCAGTATACAC	NA	NA	NA	NA	NA	NA	NA	NA	73471757	73454464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_73454599_73454863_73455051_73455170_73455265_73455571_73455698_73455924_73456084_73457469_73457688_73458513_73458623_73458721_73458760_73471657
ONT_simulated_read_5394939	chrX	-	1740	4	ISM	ENSMUSG00000025658.17	ENST00000642501.1	6184	18	136083	2734	136083	-51	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	159	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCGGTGAAAAAGTAATTTA	NA	NA	NA	NA	NA	NA	NA	NA	156643597	156616004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_156617070_156636090_156636632_156639555_156639657_156643564
ONT_simulated_read_5398567	chr9	+	638	4	ISM	ENSMUSG00000032002.11	ENST00000531543.1	777	5	18548	-29	18548	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	401	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTCCGTTGAGTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	7203262	7207040	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_7203372_7203450_7203556_7205297_7205401_7206719
ONT_simulated_read_54013	chr1	-	459	5	ISM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	4803	418	4803	-418	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTAAGGATAAACTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	10103549	10095243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482
ONT_simulated_read_5401691	chr15	-	1234	1	ISM	ENSMUSG00000022361.15	ENSMUST00000175805.9	4839	3	21184	6825	21184	-6523	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTTGGACTCCTGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	57918457	57917223	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_57917200_57918500
ONT_simulated_read_5401746	chr1	-	813	4	ISM	ENSMUSG00000026360.10	ENSMUST00000127206.8	3021	5	1130	2033	1001	512	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATTTAAAATCAATAGGTC	NA	NA	NA	NA	NA	NA	NA	NA	143878769	143877108	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_143877613_143877853_143878021_143878517_143878580_143878689
ONT_simulated_read_540316	chr1	-	666	7	NIC	ENSMUSG00000026632.18	novel	745	9	NA	NA	2657	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCCCCTGCAAGCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	190792382	190778366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_190778518_190781478_190781557_190785056_190785170_190787052_190787109_190787458_190787569_190791023_190791109_190792309
ONT_simulated_read_5405500	chr11	-	431	1	Antisense	novelGene_ENSMUSG00000057098.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCCGTTGGAGAACAGGA	NA	NA	NA	NA	NA	NA	NA	NA	44509023	44508592	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr11_-_44508600_44509000
ONT_simulated_read_5405712	chr4	-	106	1	ISM	ENSMUSG00000044018.4	ENSMUST00000057829.4	2114	2	6539	1853	6539	-1853	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAAGAAGTTCTTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	49514554	49514448	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_49514400_49514600
ONT_simulated_read_5406220	chr17	-	526	1	ISM	ENSMUSG00000024099.16	ENSMUST00000143987.9	1697	8	22010	386	21946	-386	mono-exon	FALSE	NA	NA	NA	NA	NA	539	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCTGTAGCCCTGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	66386544	66386018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_66386000_66386500
ONT_simulated_read_5407637	chr7	-	1909	16	ISM	ENSMUSG00000003435.10	ENSMUST00000209141.2	3755	29	12505	1491	12306	-1265	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATATGGGGGAACCCCG	NA	NA	NA	NA	NA	NA	NA	NA	28025626	28015813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374
ONT_simulated_read_5408589	chr11	-	1978	1	ISM	ENSMUSG00000017466.10	ENSMUST00000017610.10	3709	5	51626	834	51626	-834	mono-exon	FALSE	NA	NA	NA	NA	NA	555	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATGTTCGCCGTGAGCG	NA	NA	NA	NA	NA	NA	NA	NA	118194706	118192728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_118192700_118194700
ONT_simulated_read_5412806	chr9	-	938	10	ISM	ENSMUSG00000032590.15	ENSMUST00000193254.6	2518	22	1888	2369	1888	-2369	internal_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCACTGGGGCATCCGAG	NA	NA	NA	NA	NA	NA	NA	NA	107969917	107964980	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752
ONT_simulated_read_541442	chr18	-	620	1	ISM	ENSMUSG00000024645.6	ENSMUST00000025547.4	2418	6	3794	920	3794	-920	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTCTCAGAAGAATGGAC	NA	NA	NA	NA	NA	NA	NA	NA	84965855	84965235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_84965200_84965900
ONT_simulated_read_5415042	chr11	-	1180	9	ISM	ENSMUSG00000017405.15	ENSMUST00000017549.13	2809	15	5377	1468	5377	-1468	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCAGTTCCCGCAGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	78062124	78058399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78061779_78061915
ONT_simulated_read_5418197	chr15	+	2051	6	ISM	ENSMUSG00000072501.6	ENST00000395390.6	5108	19	49841	1076	49841	-1076	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACACTCACAAATTTTAGC	NA	NA	NA	NA	NA	NA	NA	NA	66501758	66514817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_66501831_66502715_66502816_66504554_66504751_66508532_66508882_66511761_66511925_66513646
ONT_simulated_read_5418636	chr5	+	565	3	ISM	ENSMUSG00000038072.15	ENSMUST00000045737.14	2552	12	0	17001	0	-17000	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGGATACCACAGAGACG	NA	NA	NA	NA	NA	NA	NA	NA	25427879	25453915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_25428030_25452451_25452785_25453833
ONT_simulated_read_5421821	chr1	-	488	1	FSM	ENSMUSG00000089838.2	ENSMUST00000159266.2	336	1	0	-152	0	152	mono-exon	FALSE	NA	NA	NA	NA	NA	921	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTTTTAATATATCCTAA	NA	NA	NA	NA	NA	NA	NA	NA	170753213	170752725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_170752700_170753200
ONT_simulated_read_5422054	chr11	-	999	3	ISM	ENSMUSG00000011254.17	ENSMUST00000109254.2	2202	7	3557	684	3557	-684	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTACCATAATCATTGACAT	NA	NA	NA	NA	NA	NA	NA	NA	45842458	45838353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_45839156_45841022_45841131_45842369
ONT_simulated_read_5422937	chrX	-	810	1	ISM	ENSMUSG00000040363.16	ENSMUST00000115513.9	6941	15	42665	339	23719	-336	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCCACACACAACAACTAAT	NA	NA	NA	NA	NA	NA	NA	NA	11904127	11903317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_11903300_11904100
ONT_simulated_read_5423292	chr3	+	882	8	ISM	ENSMUSG00000027710.15	ENSMUST00000011492.15	3930	18	93	14391	5	2442	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGTGCCTGTGGAAAATG	NA	NA	NA	NA	NA	NA	NA	NA	36120220	36132611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_36120420_36123858_36123953_36127655_36127758_36128498_36128606_36129391_36129493_36130124_36130204_36130870_36131046_36132586
ONT_simulated_read_5426735	chr3	+	1217	9	ISM	ENSMUSG00000032657.16	ENSMUST00000041913.13	3083	12	377	2127	-53	-2124	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGTCGATTATGTGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	89090886	89094471	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89091256_89091458_89091516_89091719_89091831_89091936_89092057_89092195_89092304_89092740_89092917_89093040_89093141_89094085_89094156_89094365
ONT_simulated_read_54302	chr2	-	1506	13	ISM	ENSMUSG00000089917.8	ENSMUST00000057816.15	1849	15	7250	0	7214	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTGTGGCAGAATGTAACC	NA	NA	NA	NA	NA	NA	NA	NA	181216551	181210941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214262_181214280_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443
ONT_simulated_read_5435038	chr4	-	603	1	ISM	ENSMUSG00000028719.9	ENSMUST00000030491.9	3170	6	25486	1817	25387	185	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACAGCTTGTGCAACGT	NA	NA	NA	NA	NA	NA	NA	NA	114818952	114818349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_114818300_114819000
ONT_simulated_read_5436666	chr11	-	511	3	ISM	ENSMUSG00000020889.12	ENSMUST00000064941.7	2721	8	5474	345	5474	-345	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCTGAACAACATGCATTC	NA	NA	NA	NA	NA	NA	NA	NA	98660685	98659102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_98659246_98659874_98660086_98660528
ONT_simulated_read_5439037	chr10	+	503	2	ISM	ENSMUSG00000019779.16	ENSMUST00000019913.15	4696	9	133	127088	12	-125763	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTACTGCAGAGGACCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	34359527	34360186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_34359585_34359740
ONT_simulated_read_5439805	chr2	-	1212	11	NIC	ENSMUSG00000056486.19	novel	1411	11	NA	NA	9	-175	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGCTATCAGAGACTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	73551777	73443427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_73443541_73445005_73445112_73448264_73448403_73454458_73454537_73455220_73455395_73462089_73462175_73509958_73510248_73537262_73537377_73540798_73540827_73546707_73546764_73551746
ONT_simulated_read_5441714	chr8	+	1272	8	ISM	ENSMUSG00000025812.19	ENST00000374794.8	4505	22	341078	1800	99135	-320	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCCCTGGTGAAGGCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	128131925	128336966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_128132046_128136036_128136189_128142050_128142279_128153002_128153235_128200859_128201097_128319541_128319663_128329539_128329668_128336912
ONT_simulated_read_5444158	chr7	+	756	4	ISM	ENSMUSG00000018819.11	ENSMUST00000149521.8	1910	11	0	6353	0	-6085	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGAGAGCCTCCTCAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	142030749	142042251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_142031104_142038215_142038363_142040083_142040243_142042155
ONT_simulated_read_5444388	chr7	-	1314	8	ISM	ENSMUSG00000089832.9	ENSMUST00000003857.7	2358	18	7419	0	7419	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTATAGTCTTGGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	27048025	27041557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958
ONT_simulated_read_5444758	chr8	-	555	4	ISM	ENSMUSG00000039375.17	ENST00000508596.6	4136	28	31269	31795	31269	26030	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGCAAAGTGTCAAGAGACA	NA	NA	NA	NA	NA	NA	NA	NA	55118165	55114344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_55114382_55114467_55114618_55115883_55116087_55118000
ONT_simulated_read_544506	chr18	+	1363	6	ISM	ENSMUSG00000024425.5	ENSMUST00000236085.2	1796	8	28806	53	28744	-53	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAATACAATAGAACATTA	NA	NA	NA	NA	NA	NA	NA	NA	38580765	38598197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597329
ONT_simulated_read_5448922	chr17	+	278	2	ISM	ENSMUSG00000024220.15	ENSMUST00000233613.2	2491	14	15928	3408	15928	-3406	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCTTACCTTTCGGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	28421088	28421452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_28421323_28421408
ONT_simulated_read_5451194	chr9	+	765	7	ISM	ENSMUSG00000055334.5	ENSMUST00000068856.5	1391	9	0	5110	0	-5110	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGCTGTTGGTACAGTT	NA	NA	NA	NA	NA	NA	NA	NA	56858161	56885380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_56858238_56864297_56864461_56870279_56870428_56877537_56877643_56877873_56877971_56882496_56882595_56885302
ONT_simulated_read_5452811	chr6	-	558	1	ISM	ENSMUSG00000029780.15	ENSMUST00000101367.9	1519	10	18852	77	18852	-77	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCCGCATCGCTAACATT	NA	NA	NA	NA	NA	NA	NA	NA	56860019	56859461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_56859500_56860000
ONT_simulated_read_5453783	chr5	-	662	1	NIC	ENSMUSG00000001098.16	novel	1374	8	NA	NA	14630	447	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGAGTCTGCTCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	114503897	114503235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_114503200_114503900
ONT_simulated_read_5454621	chr18	-	1645	14	ISM	ENSMUSG00000024566.11	ENST00000307671.12	3290	28	140846	2731	140846	-2731	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCAGGACGTGGCACTGG	NA	NA	NA	NA	NA	NA	NA	NA	80820249	80781960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_80782072_80782961_80783020_80793033_80793143_80795972_80796038_80796206_80796363_80797163_80797229_80797459_80797605_80799668_80799759_80801509_80801609_80805276_80805448_80806088_80806173_80808237_80808331_80808985_80809148_80820012
ONT_simulated_read_5455303	chr10	-	3859	1	ISM	ENSMUSG00000020137.6	ENSMUST00000218842.2	4970	3	11516	657	11381	411	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAACAACAACAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	115208824	115204965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_115205000_115208800
ONT_simulated_read_5458464	chr10	-	558	3	ISM	ENSMUSG00000034758.13	ENSMUST00000142948.8	1961	14	6290	1900	6272	-1899	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACATCTGGACAGGGGGTC	NA	NA	NA	NA	NA	NA	NA	NA	81430419	81428637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_81428689_81429828_81430077_81430160
ONT_simulated_read_5459310	chr8	-	487	7	ISM	ENSMUSG00000036330.13	ENST00000519026.5	1237	12	8595	47	8595	-47	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGCTGCTTCCTGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	69517968	69492938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_69493027_69493233_69493354_69493629_69493694_69495365_69495418_69496576_69496656_69504104_69504166_69517945
ONT_simulated_read_5459760	chr16	-	1400	3	ISM	ENSMUSG00000022964.15	ENSMUST00000023686.15	2347	7	17531	382	3120	-382	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCCATTCTTAGAATTGA	NA	NA	NA	NA	NA	NA	NA	NA	91377157	91371772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_91373047_91374861_91374920_91377089
ONT_simulated_read_5460828	chr7	+	880	8	ISM	ENSMUSG00000030890.17	ENSMUST00000163389.9	1749	13	3463	1012	3090	-977	internal_fragment	FALSE	canonical	NA	NA	NA	NA	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACCACAGTTCACTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	105389394	105391117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993
ONT_simulated_read_5462759	chr2	-	659	1	FSM	ENSMUSG00000082820.4	ENSMUST00000117547.2	489	1	0	-170	0	170	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCAGAAGCTCCTCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	97780024	97779365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_97779400_97780000
ONT_simulated_read_5463424	chr1	-	1024	8	NNC	ENSMUSG00000073643.12	novel	4551	12	NA	NA	42513	-3095	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTTTGGGGGTATTTG	NA	NA	NA	NA	NA	NA	NA	NA	79696973	79683073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_-_79683288_79683960_79684070_79685168_79685289_79686809_79686912_79691574_79691681_79692590_79692718_79694919_79695033_79696840
ONT_simulated_read_5463553	chr10	-	956	1	ISM	ENSMUSG00000020083.14	ENSMUST00000125704.8	1769	4	1967	473	1862	82	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGACCTTGTGATGTCG	NA	NA	NA	NA	NA	NA	NA	NA	61944862	61943906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_61943900_61944900
ONT_simulated_read_5464403	chr6	-	950	3	ISM	ENSMUSG00000038784.14	ENSMUST00000114993.9	3473	12	80603	2063	80539	-2063	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACAGGTAACTTCCTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	35030021	35001068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_35001276_35027996_35028495_35029776
ONT_simulated_read_5466969	chr1	-	769	1	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	52041	4257	47147	3588	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACTTGGGGTCAGCAGGC	NA	NA	NA	NA	NA	NA	NA	NA	180919728	180918959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_180919000_180919700
ONT_simulated_read_5468274	chr6	+	1063	11	ISM	ENSMUSG00000051855.16	ENSMUST00000163949.9	2561	12	2732	1100	2729	-1100	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTAAGGGTGACATGATA	NA	NA	NA	NA	NA	NA	NA	NA	30740780	30747361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
ONT_simulated_read_5469401	chr3	-	813	2	ISM	ENSMUSG00000019338.14	ENSMUST00000019482.8	4632	9	7027	592	7027	-592	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGCCTTCTTTTTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	94915522	94914604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_94915278_94915382
ONT_simulated_read_5469476	chr1	-	160	2	ISM	ENSMUSG00000026701.16	ENSMUST00000051925.5	959	6	7474	210	7474	-210	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCAAACAATGTTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	161071262	161069377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_161069420_161071144
ONT_simulated_read_5471148	chr1	-	475	2	ISM	ENSMUSG00000026558.14	ENSMUST00000053686.9	4731	7	237	14599	237	-14599	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGTTGAGAGATGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	167112652	167065050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_167065218_167112344
ONT_simulated_read_5474196	chr3	-	1328	9	ISM	ENSMUSG00000008730.18	ENSMUST00000029438.15	4185	16	13814	9775	13633	-9775	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAGCTGCGCAGCAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	103684758	103660750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_103660831_103661516_103661639_103665850_103666077_103667810_103667974_103668802_103668988_103670988_103671076_103671777_103671898_103676713_103676838_103684537
ONT_simulated_read_5474374	chr1	+	780	5	ISM	ENSMUSG00000047793.14	ENST00000405547.7	4023	28	45248	6744	45248	-6744	internal_fragment	FALSE	canonical	NA	NA	NA	NA	1129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCACTGAGGTGGACAGG	NA	NA	NA	NA	NA	NA	NA	NA	93208958	93211064	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_93209073_93209373_93209488_93209990_93210105_93210413_93210711_93210923
ONT_simulated_read_5475272	chrX	-	751	1	FSM	ENSMUSG00000083327.2	ENSMUST00000120233.2	2406	1	0	1655	0	-1655	mono-exon	FALSE	NA	NA	NA	NA	NA	937	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCCTGATTGCTCGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	103391840	103391089	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_103391100_103391800
ONT_simulated_read_5480377	chr7	-	551	4	ISM	ENSMUSG00000030733.11	ENSMUST00000205440.2	3089	11	6138	695	5870	-684	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGCGCCAGAAGTTGCGG	NA	NA	NA	NA	NA	NA	NA	NA	126068124	126066860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126066946_126067121_126067222_126067644_126067814_126067927
ONT_simulated_read_5482567	chr5	+	934	5	ISM	ENSMUSG00000040407.19	ENSMUST00000044492.10	13123	48	136100	12231	136100	-12231	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAAGTTATCTCTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	4114373	4119079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006
ONT_simulated_read_5482595	chr11	+	743	7	ISM	ENSMUSG00000040950.14	ENSMUST00000041550.12	1586	10	3765	975	3670	-973	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCCTGGAGGAGCAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	70024919	70027401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_70025090_70025877_70025989_70026416_70026513_70026595_70026668_70026746_70026819_70027076_70027164_70027266
ONT_simulated_read_548866	chr6	+	232	3	ISM	ENSMUSG00000030088.16	ENST00000393431.6	2480	20	32145	4410	32145	-4410	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATGGCCCGCAGAACCAT	NA	NA	NA	NA	NA	NA	NA	NA	90566331	90571516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_90566413_90568782_90568882_90571464
ONT_simulated_read_5489355	chr8	-	734	1	ISM	ENSMUSG00000036356.16	ENSMUST00000078350.13	3943	10	376446	1186	376414	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAACCACCACCACCAACA	NA	NA	NA	NA	NA	NA	NA	NA	68811352	68810618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_68810600_68811400
ONT_simulated_read_5492774	chr6	-	1190	3	ISM	ENSMUSG00000030057.16	ENSMUST00000032138.15	2178	5	5585	611	5509	-144	3prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	1123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAGAAAATGTAATTTTA	NA	NA	NA	NA	NA	NA	NA	NA	87822503	87820207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_87821139_87822103_87822306_87822446
ONT_simulated_read_5493699	chr8	+	405	4	ISM	ENSMUSG00000031447.8	ENST00000332556.5	2043	9	13231	833	13231	-833	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTCATTGCCTACCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	13222573	13224498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_13222661_13223626_13223694_13223779_13223951_13224418
ONT_simulated_read_5494235	chr2	-	4644	1	ISM	ENSMUSG00000034723.12	ENSMUST00000038228.11	5488	8	45317	0	45213	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGATGTAATGGAGATTT	NA	NA	NA	NA	NA	NA	NA	NA	134440748	134436104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_134436100_134440700
ONT_simulated_read_5494621	chr10	-	429	1	FSM	ENSMUSG00000072407.5	ENSMUST00000097166.5	429	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	726	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTCCTAATTCCCCGAAC	NA	NA	NA	NA	NA	NA	NA	NA	74699248	74698819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_74698800_74699200
ONT_simulated_read_54949	chr12	-	1439	8	ISM	ENSMUSG00000020573.18	ENST00000440650.6	3582	11	7944	0	5260	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAGTGCGAGGCTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	32250725	32226386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_32226856_32242078_32242237_32243597_32243710_32244692_32244824_32245617_32245709_32247183_32247331_32249086_32249191_32250498
ONT_simulated_read_5495248	chr9	-	1214	8	ISM	ENSMUSG00000002028.14	ENST00000389506.10	13573	36	33772	34818	33770	-34818	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAGATGGGAGGCTTAGG	NA	NA	NA	NA	NA	NA	NA	NA	44758822	44752357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44752382_44752859_44752992_44753606_44753681_44753829_44754214_44754654_44754720_44756685_44756921_44758149_44758328_44758700
ONT_simulated_read_5496181	chr18	-	857	6	ISM	ENSMUSG00000024644.18	ENST00000324301.12	1116	8	5932	521	5932	-521	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGAAGCTCAACAGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	84693273	84686678	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101
ONT_simulated_read_549847	chr8	-	621	1	ISM	ENSMUSG00000048644.9	ENSMUST00000053252.9	1212	2	635	359	635	-359	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTCAATTTCAGTGCACT	NA	NA	NA	NA	NA	NA	NA	NA	4308639	4308018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_4308000_4308600
ONT_simulated_read_5498991	chr10	-	999	4	ISM	ENSMUSG00000035835.15	ENSMUST00000092325.11	2766	7	115	2073	51	-2073	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCATCCTGTCAGCAAGG	NA	NA	NA	NA	NA	NA	NA	NA	79710353	79702687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_79702865_79703005_79703142_79703221_79703408_79709853
ONT_simulated_read_5499199	chrX	-	1271	5	ISM	ENSMUSG00000036782.14	ENST00000371876.5	3738	8	15801	1514	15801	-750	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGACAAATGGACCCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	23114461	23087038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350
ONT_simulated_read_549987	chr10	-	414	1	ISM	ENSMUSG00000092162.4	ENSMUST00000170257.4	7340	6	8983	5092	8983	-5092	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCATTTGTACCCTAATC	NA	NA	NA	NA	NA	NA	NA	NA	130282936	130282522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_130282500_130282900
ONT_simulated_read_5503976	chr6	-	1874	5	ISM	ENSMUSG00000039985.15	ENSMUST00000204435.3	2785	7	10386	626	0	-626	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAACTGAAGTTGTCTAAT	NA	NA	NA	NA	NA	NA	NA	NA	148834647	148823180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499
ONT_simulated_read_550467	chr17	-	1208	7	ISM	ENSMUSG00000015120.16	ENSMUST00000173084.8	1286	8	638	-5	638	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGTTGCATTATCAT	NA	NA	NA	NA	NA	NA	NA	NA	25491719	25480889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25491511
ONT_simulated_read_5506063	chr10	-	1203	5	ISM	ENSMUSG00000032788.16	ENST00000468090.5	1109	10	17858	-480	17858	480	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGTTTGCCTCACTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	78282829	78275906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_78276748_78276970_78277038_78279614_78279752_78280816_78280929_78282783
ONT_simulated_read_5509746	chr8	+	821	6	ISM	ENSMUSG00000031657.17	ENSMUST00000034079.14	3251	15	1	24443	0	-24413	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTGAAATCTTTTGATGG	NA	NA	NA	NA	NA	NA	NA	NA	88864483	88874212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_88864786_88864902_88865076_88866519_88866608_88868299_88868410_88871156_88871267_88874174
ONT_simulated_read_5510305	chr11	+	2719	17	ISM	ENSMUSG00000032740.18	ENSMUST00000239407.2	6051	31	89540	908	89540	-908	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTGTCTTCCGAC	NA	NA	NA	NA	NA	NA	NA	NA	29413887	29453897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_29414191_29415610_29415739_29420314_29420457_29427293_29427459_29430489_29430652_29432108_29432387_29432597_29432742_29435824_29436012_29439581_29439728_29443699_29443793_29443878_29444094_29447342_29447427_29448408_29448613_29449334_29449407_29450975_29451057_29453382_29453652_29453851
ONT_simulated_read_5510784	chrX	+	134	1	ISM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	0	21701	0	-21701	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAACTTCTGGAGGACG	NA	NA	NA	NA	NA	NA	NA	NA	99537896	99538030	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_99537900_99538000
ONT_simulated_read_5511808	chr9	-	2335	7	ISM	ENSMUSG00000032258.16	ENSMUST00000034791.15	4160	8	14066	1706	14066	-1706	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATTTTAATACAGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	83309014	83277177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_83278109_83280564_83280695_83281678_83281822_83282655_83282750_83283664_83283803_83305075_83305606_83308645
ONT_simulated_read_5511838	chr9	+	2020	7	NNC	ENSMUSG00000032320.8	novel	2024	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTGCACCTGAGACATTT	NA	NA	NA	NA	NA	NA	NA	NA	55949140	55966361	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr9_+_55949489_55949862_55949965_55952415_55952613_55960190_55960305_55963442_55963540_55964710_55964854_55965342
ONT_simulated_read_5512310	chr3	-	394	1	ISM	ENSMUSG00000027663.13	ENSMUST00000029199.11	7797	6	24026	6467	23968	139	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCGGGTGTAACTTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	32395801	32395407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_32395400_32395800
ONT_simulated_read_5517244	chr17	-	1775	12	NIC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	7988	-3394	intron_retention	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAGCCAGGAAGGCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	33896374	33868606	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889054_33889108_33896247
ONT_simulated_read_5517402	chr11	-	1407	5	ISM	ENSMUSG00000001507.17	ENSMUST00000120375.8	4697	26	23455	344	15852	-344	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGAGATCCCCACGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	94944172	94935643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_94936590_94937746_94937873_94942277_94942377_94943269_94943384_94944050
ONT_simulated_read_5518047	chr8	-	414	1	ISM	ENSMUSG00000039067.6	ENSMUST00000044106.6	1581	7	7147	523	7088	191	mono-exon	FALSE	NA	NA	NA	NA	NA	355	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAGGAGAAAAAGTAA	NA	NA	NA	NA	NA	NA	NA	NA	108307949	108307535	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_108307500_108307900
ONT_simulated_read_5518869	chr13	-	362	1	FSM	ENSMUSG00000057762.7	ENSMUST00000071118.7	1030	1	0	668	0	-668	mono-exon	FALSE	NA	NA	NA	NA	NA	284	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTACGTTGCTCTTTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	97235745	97235383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_97235400_97235700
ONT_simulated_read_5521683	chr5	+	621	1	ISM	ENSMUSG00000029141.17	ENST00000326019.10	2503	14	55	26362	0	-9190	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCGGGCATGTAATGCGCT	NA	NA	NA	NA	NA	NA	NA	NA	31684355	31684976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31684400_31685000
ONT_simulated_read_5523143	chr5	-	388	2	ISM	ENSMUSG00000105987.5	ENSMUST00000199941.5	2804	4	2241	2373	0	-2373	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATGGGGATCTTGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	23915423	23908019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_23908348_23915363
ONT_simulated_read_5525565	chr7	+	1395	13	ISM	ENSMUSG00000030505.18	ENSMUST00000032715.13	2507	16	198	9726	198	-9726	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGGGTAAGTATCATGAG	NA	NA	NA	NA	NA	NA	NA	NA	49428291	49498287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_49428462_49430056_49430140_49430868_49430919_49431689_49431793_49435814_49435975_49436980_49437123_49441720_49441787_49448053_49448176_49456274_49456375_49467779_49467859_49476455_49476644_49478691_49478779_49498242
ONT_simulated_read_5527503	chr10	-	549	1	ISM	ENSMUSG00000001665.12	ENSMUST00000001715.10	1880	5	6404	347	6008	-347	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCCTCTGTGCTCCTCAA	NA	NA	NA	NA	NA	NA	NA	NA	75610844	75610295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_75610300_75610800
ONT_simulated_read_5532974	chr7	-	353	4	ISM	ENSMUSG00000030423.8	ENSMUST00000032585.8	2113	7	5253	1169	5253	-1169	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGAGACAGATGTCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	37965594	37962588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550
ONT_simulated_read_5534946	chr18	+	558	6	ISM	ENSMUSG00000024483.20	ENST00000297183.10	7604	33	40216	33932	40109	16470	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTCTCTGCAGGTAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	36733852	36757580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747767_36747871_36757561
ONT_simulated_read_5536485	chr6	+	659	4	ISM	ENSMUSG00000030344.12	ENST00000545990.6	3034	5	45	9431	0	-9427	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATGTGTCCATCAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	126830122	126841839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_126830214_126834063_126834175_126837217_126837314_126841478
ONT_simulated_read_5537825	chr2	-	459	5	ISM	ENSMUSG00000027193.13	ENST00000420461.6	2014	13	15644	5116	15644	-5116	internal_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTCCAGGAGGACCAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	94252824	94248689	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641
ONT_simulated_read_5540486	chr4	-	641	5	ISM	ENSMUSG00000028409.12	ENSMUST00000030117.5	2418	12	2086	12080	2086	-12080	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGATGGTCAGTATCTG	NA	NA	NA	NA	NA	NA	NA	NA	40755837	40748621	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626
ONT_simulated_read_554136	chr17	+	1899	11	ISM	ENSMUSG00000034709.9	ENSMUST00000038551.8	3141	22	31999	2	31999	-2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTTCGGTCTGTGACAG	NA	NA	NA	NA	NA	NA	NA	NA	88869544	88895793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_88869674_88873068_88873162_88876507_88876636_88880030_88880184_88882619_88882713_88884565_88884809_88886209_88886243_88887862_88887980_88889842_88889942_88891280_88891410_88895111
ONT_simulated_read_5541861	chr10	+	1100	8	ISM	ENSMUSG00000006498.17	ENSMUST00000165704.8	3169	13	-24	3846	-3	-2988	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGGGAATTCTGTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	79690438	79696759	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657
ONT_simulated_read_5541925	chr7	-	1110	1	ISM	ENSMUSG00000054808.16	ENSMUST00000068045.14	3877	21	67983	0	67912	0	mono-exon	FALSE	NA	NA	NA	NA	NA	351	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGTGTCATCTTCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	28593782	28592672	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28592700_28593800
ONT_simulated_read_5542717	chr17	-	380	4	ISM	ENSMUSG00000059409.10	ENSMUST00000002839.9	2926	15	18615	2409	18615	-2409	internal_fragment	FALSE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAGTACATCATGAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	46997313	46996325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_46996356_46996444_46996616_46996979_46997034_46997188
ONT_simulated_read_5545621	chr3	+	799	7	ISM	ENSMUSG00000027714.12	ENSMUST00000029269.12	1617	12	21	8730	21	-8730	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGCTTTGACTCCTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	36606775	36611146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_36606901_36607183_36607279_36607954_36608075_36608188_36608292_36608786_36608925_36609630_36609714_36611011
ONT_simulated_read_5549313	chr10	-	1551	1	ISM	ENSMUSG00000019861.16	ENSMUST00000105475.9	4317	8	42309	1241	42260	-1213	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTGAGATACCTTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	52215911	52214360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_52214400_52215900
ONT_simulated_read_5549469	chr7	-	1269	1	Genic_Genomic	ENSMUSG00000057342.16	novel	NA	NA	NA	NA	-91	-6540	mono-exon	FALSE	NA	NA	NA	NA	NA	567	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATACTGAGCCTGCAATGT	NA	NA	NA	NA	NA	NA	NA	NA	45367517	45366248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr7_-_45366200_45367500
ONT_simulated_read_5549994	chr12	-	790	1	ISM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	15940	1861	15940	-1861	mono-exon	FALSE	NA	NA	NA	NA	NA	1274	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAATTCTAACTTGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	84803986	84803196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_84803200_84804000
ONT_simulated_read_5550042	chr9	-	909	4	ISM	ENSMUSG00000043067.16	ENSMUST00000142064.8	3489	23	80810	683	12110	-658	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTATTTTCTGTCCTTACC	NA	NA	NA	NA	NA	NA	NA	NA	24333626	24323756	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_24324283_24325533_24325720_24332376_24332503_24333555
ONT_simulated_read_555116	chr4	+	866	7	ISM	ENSMUSG00000029033.17	ENST00000354700.10	3494	21	6756	1216	6756	-1216	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGATGAGAGAAGCTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	155987777	155990293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155987971_155988207_155988316_155989284_155989384_155989469_155989691_155989866_155989977_155990064_155990176_155990269
ONT_simulated_read_5551164	chr5	-	475	1	ISM	ENSMUSG00000029705.18	ENSMUST00000004097.16	12862	24	292006	8550	289970	-174	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAACGCGCCTGCGCGAAG	NA	NA	NA	NA	NA	NA	NA	NA	136304293	136303818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_136303800_136304300
ONT_simulated_read_5551742	chr11	-	270	3	ISM	ENSMUSG00000050965.15	ENSMUST00000059595.11	8409	17	151718	120640	151718	-115850	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCGGATTTATCTGAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	108083036	107944852	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_107944930_107948587_107948700_108082955
ONT_simulated_read_5555003	chr17	+	1236	10	ISM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	67	1828	7	-1317	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATCATCTTACGAGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	13135335	13142126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104
ONT_simulated_read_5559801	chr18	-	1123	5	ISM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	12135	383	12042	-383	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	183	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTCTGAGGGGTATGAG	NA	NA	NA	NA	NA	NA	NA	NA	64637544	64633111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408
ONT_simulated_read_5561419	chr16	+	448	4	ISM	ENSMUSG00000032940.17	ENST00000400577.4	834	5	-47	2067	0	-2067	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCCTTACCTCAAGAGTAT	NA	NA	NA	NA	NA	NA	NA	NA	75389778	75395721	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_75389932_75393401_75393565_75395057_75395131_75395662
ONT_simulated_read_5561564	chr12	-	292	1	FSM	ENSMUSG00000113681.2	ENSMUST00000221330.2	292	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	998	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGAGCGCCTTGTGACGTC	NA	NA	NA	NA	NA	NA	NA	NA	85234579	85234287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_85234300_85234600
ONT_simulated_read_556207	chr5	+	869	1	NIC	ENSMUSG00000085227.2	novel	743	3	NA	NA	1475	-249	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGTGTGATGTTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	138263805	138264674	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_+_138263800_138264700
ONT_simulated_read_5562325	chr5	+	359	1	FSM	ENSMUSG00000107336.2	ENSMUST00000202351.2	996	1	0	637	0	-637	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTTAAGGTTAGTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	147364547	147364906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_147364500_147364900
ONT_simulated_read_5563968	chr8	-	324	2	ISM	ENSMUSG00000040459.12	ENSMUST00000048545.10	3197	4	359	18761	359	-18761	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCCAAACGCATCATGG	NA	NA	NA	NA	NA	NA	NA	NA	8740162	8733835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_8733974_8739976
ONT_simulated_read_556397	chr10	+	265	3	ISM	ENSMUSG00000074781.6	ENSMUST00000099329.5	3867	4	26247	3322	26247	-3322	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTTCTCCTGTTCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	95377253	95378197	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_95377314_95377499_95377641_95378133
ONT_simulated_read_5564957	chr3	-	485	5	ISM	ENSMUSG00000027933.12	ENSMUST00000196530.2	3778	30	39232	721	38922	-721	internal_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGTATGCTGCCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	90301688	90300103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_90300199_90300402_90300571_90301052_90301102_90301380_90301495_90301629
ONT_simulated_read_556834	chr2	+	1475	5	ISM	ENSMUSG00000005089.16	ENST00000644299.1	2954	11	19966	718	19963	0	internal_fragment	FALSE	canonical	NA	NA	NA	NA	744	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAAAGGCCACAGCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	102586251	102612489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_102586486_102591359_102591555_102597277_102597413_102607771_102608001_102611807
ONT_simulated_read_557343	chr7	+	1029	7	FSM	ENSMUSG00000006154.14	ENST00000588359.5	1026	7	-2	-1	-2	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	1642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAACAGAAGTCATTTGA	NA	NA	NA	NA	NA	NA	NA	NA	4476929	4481906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_4477213_4480328_4480459_4480562_4480695_4480888_4480998_4481138_4481314_4481617_4481751_4481839
ONT_simulated_read_5574035	chr15	-	174	1	ISM	ENSMUSG00000000552.11	ENSMUST00000229373.2	2348	8	19134	1125	8317	-118	mono-exon	FALSE	NA	NA	NA	NA	NA	618	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCATCCTCTTCTCCCCCT	NA	NA	NA	NA	NA	NA	NA	NA	103223620	103223446	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_103223400_103223600
ONT_simulated_read_5577077	chr8	+	478	2	ISM	ENSMUSG00000038206.14	ENSMUST00000110322.9	1709	4	19	27626	19	-27626	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATAAACTTGGAAATGCTG	NA	NA	NA	NA	NA	NA	NA	NA	57004143	57017802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_57004412_57017592
ONT_simulated_read_5579879	chr13	-	926	3	ISM	ENSMUSG00000052485.8	ENSMUST00000064347.8	1161	4	2135	188	2135	-188	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACTGGACATCTTCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	98829207	98822930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_98823025_98824855_98824992_98828511
ONT_simulated_read_5580102	chr6	-	208	2	ISM	ENSMUSG00000038252.14	ENSMUST00000043848.11	4629	32	7168	16237	7168	-16237	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAGAGATTGTAAGGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	125161496	125161206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_125161316_125161397
ONT_simulated_read_5582553	chr8	-	758	6	ISM	ENSMUSG00000031617.17	ENSMUST00000034030.15	2678	10	7721	995	7721	-995	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATGAATGACATCCCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	78329561	78323605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_78323810_78324437_78324610_78325182_78325283_78326285_78326399_78328043_78328138_78329486
ONT_simulated_read_5583853	chr2	-	469	3	ISM	ENSMUSG00000027109.17	ENSMUST00000066003.7	3808	6	33712	1632	33712	-1632	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAGTACAGTGCTCGCAT	NA	NA	NA	NA	NA	NA	NA	NA	72777058	72768623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_72768727_72770886_72771084_72776889
ONT_simulated_read_5586011	chr16	-	325	1	ISM	ENSMUSG00000022911.12	ENSMUST00000089289.6	3528	10	51363	1668	51102	62	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAGAAAAACCTCACAAGT	NA	NA	NA	NA	NA	NA	NA	NA	62616040	62615715	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_62615700_62616000
ONT_simulated_read_5586248	chr1	+	1158	5	ISM	ENSMUSG00000073664.12	ENST00000683969.1	8481	56	79724	63019	79715	-63019	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTTACTAATGGAAGCGC	NA	NA	NA	NA	NA	NA	NA	NA	60299472	60307136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_60299953_60300568_60300745_60303437_60303592_60304040_60304170_60306917
ONT_simulated_read_5586609	chr16	+	2180	10	ISM	ENSMUSG00000022867.12	ENST00000285681.6	4772	25	67686	500	67686	310	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGGTGATTATTTCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	76878389	76913178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_76878574_76880636_76880838_76890490_76890631_76896538_76896635_76904772_76904952_76906061_76906141_76907953_76908034_76910620_76910745_76911771_76911968_76912277
ONT_simulated_read_5598568	chr9	+	1432	7	ISM	ENSMUSG00000040875.13	ENST00000438237.6	2216	10	42	13202	0	-1606	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	490	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCCCACCCTCCCATTAG	NA	NA	NA	NA	NA	NA	NA	NA	114807636	115045880	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_114808033_114890900_114891077_114896313_114896394_114996149_114996361_115004995_115005151_115036581_115036732_115045616
ONT_simulated_read_5601493	chr3	-	2165	15	ISM	ENSMUSG00000027742.14	ENSMUST00000036665.10	3182	19	6550	550	4927	-550	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACATTGTGCACTCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	52918108	52889845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_52890613_52893821_52893902_52896530_52896585_52897379_52897488_52900175_52900344_52900860_52900993_52903428_52903547_52905677_52905770_52907901_52907967_52909666_52909759_52909833_52909963_52914666_52914761_52916473_52916545_52916893_52916977_52917996
ONT_simulated_read_5601770	chr15	+	640	3	ISM	ENSMUSG00000022385.12	ENSMUST00000231074.2	2692	11	0	14074	0	-14031	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCTGTCTCAGCAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	85744146	85746700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_85744297_85746101_85746160_85746268
ONT_simulated_read_5601912	chr16	-	562	3	ISM	ENSMUSG00000022519.15	ENSMUST00000023161.8	5000	7	35484	2828	35484	-2828	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGTCACGGAACCTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	4305455	4300919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4301149_4304140_4304375_4305356
ONT_simulated_read_5601913	chr7	+	1411	12	ISM	ENSMUSG00000001829.18	ENSMUST00000001884.14	4627	16	143	4794	3	-2434	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTCATCATGACTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	101312982	101434581	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534
ONT_simulated_read_560393	chr4	-	636	4	ISM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	1673	0	1673	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7099	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGGTTTGGATTTGGTTG	NA	NA	NA	NA	NA	NA	NA	NA	135779031	135777041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924
ONT_simulated_read_5606089	chr18	+	750	1	ISM	ENSMUSG00000023036.15	ENSMUST00000066140.13	5024	4	322	25723	0	-25723	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAATCCGACTACCGCCT	NA	NA	NA	NA	NA	NA	NA	NA	37948453	37949203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_37948500_37949200
ONT_simulated_read_5606855	chr10	+	901	8	ISM	ENSMUSG00000020089.9	ENSMUST00000020286.7	1364	11	0	6498	0	-6498	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGTTAACTCTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	61484330	61503449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363
ONT_simulated_read_5607283	chr8	-	166	1	ISM	ENSMUSG00000031751.15	ENSMUST00000053766.14	3880	14	39528	1561	39528	-1561	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTCCTGCCCAGCTCTAC	NA	NA	NA	NA	NA	NA	NA	NA	94699942	94699776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_94699800_94699900
ONT_simulated_read_5609382	chr10	-	1086	4	ISM	ENSMUSG00000020167.15	ENSMUST00000105339.8	2096	18	15793	-368	15723	-60	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	148	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTTTTTTTCCCTTA	NA	NA	NA	NA	NA	NA	NA	NA	80251123	80245519	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80246109_80248660_80248897_80249038_80249172_80250995
ONT_simulated_read_5610756	chrX	-	565	2	ISM	ENSMUSG00000025151.17	ENSMUST00000026142.8	2821	13	5923	0	2289	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	620	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	NA	NA	NA	NA	NA	NA	NA	93579826	93579079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_93579284_93579465
ONT_simulated_read_5611168	chr9	-	810	8	ISM	ENSMUSG00000032579.15	ENSMUST00000035196.14	2192	11	2120	800	2102	107	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGACTTGGAAAGAAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	107213429	107205082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377
ONT_simulated_read_5611975	chr11	-	504	1	ISM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	45694	2215	28322	1	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCCTTCGCCCGACCAGA	NA	NA	NA	NA	NA	NA	NA	NA	103257819	103257315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_103257300_103257800
ONT_simulated_read_5612019	chr6	+	691	7	ISM	ENSMUSG00000055912.9	ENSMUST00000069695.9	1546	8	27	1077	27	-1077	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCTGGACATGGCTATGG	NA	NA	NA	NA	NA	NA	NA	NA	72332456	72335668	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_72332528_72333113_72333296_72333704_72333753_72334032_72334120_72334931_72335000_72335290_72335419_72335561
ONT_simulated_read_5612094	chr8	+	416	3	NIC	ENSMUSG00000031848.16	novel	925	5	NA	NA	0	-479	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGCGGGAGGAGGCCGC	NA	NA	NA	NA	NA	NA	NA	NA	71125897	71130690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_+_71126108_71130407_71130527_71130603
ONT_simulated_read_5612234	chr13	+	2359	11	ISM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	116	23188	116	-23188	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTATATGGGTGGTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	13612251	13663666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_13612512_13638306_13638607_13639894_13640122_13642815_13643193_13647364_13647515_13650743_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590
ONT_simulated_read_5617191	chr4	-	547	5	ISM	ENSMUSG00000043872.15	ENSMUST00000055013.10	3001	6	4629	2235	4629	-2186	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGACACAGCTGCTCCC	NA	NA	NA	NA	NA	NA	NA	NA	126948150	126943620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000
ONT_simulated_read_5619209	chr12	+	573	1	FSM	ENSMUSG00000113749.2	ENSMUST00000220565.2	721	1	0	148	0	-148	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTGGGGATGAGATGGC	NA	NA	NA	NA	NA	NA	NA	NA	20467722	20468295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_20467700_20468300
ONT_simulated_read_5619893	chr9	+	3602	21	ISM	ENSMUSG00000032485.15	ENSMUST00000098350.10	4227	23	0	827	0	-827	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGCTGTGTACATTGAT	NA	NA	NA	NA	NA	NA	NA	NA	110162423	110213191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_110162574_110182013_110182233_110191461_110191592_110201264_110201423_110202043_110202265_110202457_110202564_110203064_110203238_110203577_110203705_110205630_110205744_110206706_110206802_110207411_110207511_110207636_110207856_110208523_110208901_110209268_110209458_110209561_110209764_110209840_110209957_110210039_110210554_110210630_110210717_110212616_110212700_110212799_110212967_110213133
ONT_simulated_read_5620361	chr9	-	997	7	ISM	ENSMUSG00000032316.9	ENSMUST00000065330.8	2496	13	11192	62	11192	-62	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	154	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGGACCCAAGCTATTTA	NA	NA	NA	NA	NA	NA	NA	NA	57661951	57658053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784
ONT_simulated_read_5620679	chr3	+	580	1	FSM	ENSMUSG00000082185.2	ENSMUST00000119844.2	727	1	0	147	0	-147	mono-exon	FALSE	NA	NA	NA	NA	NA	639	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCCTTCGATGATGCTAT	NA	NA	NA	NA	NA	NA	NA	NA	98728353	98728933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_98728400_98728900
ONT_simulated_read_5621677	chr17	-	146	1	ISM	ENSMUSG00000023940.15	ENSMUST00000024736.14	3628	9	12637	1765	12637	-1765	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTATTAGACAGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	53983724	53983578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_53983600_53983700
ONT_simulated_read_5621935	chr7	+	402	7	ISM	ENSMUSG00000063931.15	ENSMUST00000075068.14	1881	15	33210	13339	24247	-13062	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTTGCTTCTGACATCA	NA	NA	NA	NA	NA	NA	NA	NA	34645013	34730794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_34645074_34653982_34654028_34668929_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767
ONT_simulated_read_562235	chr8	-	677	1	ISM	ENSMUSG00000031916.18	ENSMUST00000095517.12	4476	5	7584	2140	7579	-2134	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCGGGGACCCGGTGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	107775737	107775060	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_107775100_107775700
ONT_simulated_read_5626951	chr3	-	3194	4	NNC	ENSMUSG00000068923.15	novel	4567	4	NA	NA	-392	-1762	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTCAGCAGAAGCGCACG	NA	NA	NA	NA	NA	NA	NA	NA	88680298	88653769	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_-_88655318_88656088_88656210_88669032_88669857_88679597
ONT_simulated_read_563020	chr9	-	3729	26	ISM	ENSMUSG00000032570.18	ENSMUST00000038118.15	4876	28	25014	695	29	-230	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTCCCAAACTCAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	105347318	105289251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_105290389_105291832_105291975_105295248_105295345_105295742_105295891_105297380_105297498_105298772_105298842_105300141_105300309_105301368_105301420_105308693_105308792_105309852_105310024_105312250_105312408_105316539_105316645_105319964_105320055_105320144_105320241_105322416_105322515_105323250_105323376_105326020_105326088_105329002_105329079_105329973_105330043_105330732_105330886_105336858_105336968_105338215_105338278_105341824_105341861_105343781_105343872_105344899_105345017_105347235
ONT_simulated_read_5633110	chr16	-	1644	13	ISM	ENSMUSG00000022789.16	ENSMUST00000096229.11	3966	19	21923	1754	21518	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAACTGTTTGATATCCA	NA	NA	NA	NA	NA	NA	NA	NA	16154879	16131850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716
ONT_simulated_read_5633532	chr11	-	402	1	ISM	ENSMUSG00000020899.17	ENSMUST00000021282.12	6373	28	20217	2145	20217	-2145	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATGACCTCAGCTGCATT	NA	NA	NA	NA	NA	NA	NA	NA	68879069	68878667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_68878700_68879100
ONT_simulated_read_5638305	chr16	-	519	6	ISM	ENSMUSG00000022540.17	ENSMUST00000090453.9	652	9	1012	1290	1012	-1290	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGGTAAAGTTCTCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	4830369	4827908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290
ONT_simulated_read_5638922	chr18	-	1070	4	ISM	ENSMUSG00000044906.7	ENSMUST00000067556.4	2291	9	3970	5245	1244	-5191	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTTCAGACAGTACAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	70601581	70591455	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_70591520_70597032_70597136_70600405_70600557_70600829
ONT_simulated_read_5640861	chr2	-	1280	7	ISM	ENSMUSG00000027198.17	ENSMUST00000028623.13	2871	14	59922	168	59903	-168	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	231	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGGCTACAGATCCCAAT	NA	NA	NA	NA	NA	NA	NA	NA	93592991	93526143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897
ONT_simulated_read_5642883	chr14	-	1211	3	ISM	ENSMUSG00000022208.13	ENSMUST00000124493.2	3200	5	1392	2204	1392	-2204	internal_fragment	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGTTCAGGAAGTCTTCG	NA	NA	NA	NA	NA	NA	NA	NA	55351617	55346937	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55347276_55347533_55347653_55350863
ONT_simulated_read_5644275	chr6	-	1033	1	ISM	ENSMUSG00000038784.14	ENSMUST00000044163.10	3337	11	87396	332	87306	-291	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGATCAGAGATCAGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	35023254	35022221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_35022200_35023300
ONT_simulated_read_564571	chr4	-	655	4	ISM	ENSMUSG00000028391.17	ENSMUST00000030087.14	1440	11	12026	0	12026	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATGATTTGAAAAATCAGG	NA	NA	NA	NA	NA	NA	NA	NA	62377098	62371870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052
ONT_simulated_read_5646098	chr10	-	1214	1	ISM	ENSMUSG00000039166.17	ENSMUST00000100012.3	2321	2	29768	87	29657	-87	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCTGATACTACATGAATT	NA	NA	NA	NA	NA	NA	NA	NA	25046288	25045074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_25045100_25046300
ONT_simulated_read_5646676	chr3	+	375	4	ISM	ENSMUSG00000028137.10	ENSMUST00000029784.10	2744	13	8371	3582	8124	-3577	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGTCATCTCAGCCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	94394508	94395918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_94394592_94395093_94395160_94395445_94395587_94395833
ONT_simulated_read_5647137	chr6	+	1138	8	NNC	ENSMUSG00000036371.7	novel	1667	8	NA	NA	186	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	67244240	67261031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249217_67249802_67249923_67254744_67254923_67258631_67258806_67260886
ONT_simulated_read_56494	chr4	-	1111	7	ISM	ENSMUSG00000040606.15	ENST00000376030.7	2105	14	91927	-3	91927	3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	214	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCGTGACTCAACTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	141845592	141832096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_141832266_141834122_141834238_141835856_141836024_141836587_141836690_141839418_141839651_141844395_141844515_141845385
ONT_simulated_read_5649743	chr1	-	1409	8	ISM	ENSMUSG00000026047.14	ENST00000376004.5	1752	10	3659	-108	3659	108	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCAGCCAATTGTGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	44154037	44145936	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152043_44152162_44152336_44153600_44153679_44153853
ONT_simulated_read_5650791	chr4	-	780	5	ISM	ENSMUSG00000028546.18	ENST00000650764.1	1803	6	36069	665	35367	-665	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCACACAGGGACAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	110108719	110063802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_110063857_110068622_110068849_110070324_110070479_110083741_110083846_110108477
ONT_simulated_read_5650833	chr16	-	633	1	ISM	ENSMUSG00000004843.8	ENSMUST00000231259.2	1722	7	22288	472	22288	-131	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACATTCTAGTTGGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	65337118	65336485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_65336500_65337100
ONT_simulated_read_5651359	chr4	-	209	1	ISM	ENSMUSG00000040387.17	ENSMUST00000108214.9	5970	8	183353	4775	126430	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	441	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATCCTCAGTGCTTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	24617537	24617328	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_24617300_24617500
ONT_simulated_read_5652143	chr12	+	414	3	ISM	ENSMUSG00000020564.18	ENST00000477775.5	2336	10	6	30918	0	13159	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCAGCCACTTCCTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	33364287	33392007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_33364391_33375909_33376133_33391919
ONT_simulated_read_5654673	chr17	-	940	1	NIC	ENSMUSG00000015120.16	novel	1138	7	NA	NA	-2745	733	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGCCATGGGAGAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	25487588	25486648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_25486600_25487600
ONT_simulated_read_565517	chr3	-	3113	14	ISM	ENSMUSG00000028184.13	ENST00000674407.1	5325	22	35799	17395	0	-12897	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGACTCCATGGCCACAGC	NA	NA	NA	NA	NA	NA	NA	NA	148660410	148539493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_148539565_148540939_148541161_148541987_148542198_148543199_148543374_148544744_148544951_148545280_148545407_148552484_148552669_148556471_148556658_148557530_148557635_148558202_148558497_148564368_148565170_148571235_148571346_148596047_148596262_148660198
ONT_simulated_read_5655966	chr5	+	778	2	ISM	ENSMUSG00000029249.16	ENSMUST00000080359.12	7004	4	0	18021	0	-18021	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGCCAGTACGAAGCCGA	NA	NA	NA	NA	NA	NA	NA	NA	77413337	77416258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_77413636_77415778
ONT_simulated_read_5658219	chr2	-	168	1	ISM	ENSMUSG00000026988.16	ENSMUST00000028368.14	2072	11	4063	25990	10	-16791	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTGTTTCTCACCCTC	NA	NA	NA	NA	NA	NA	NA	NA	59708865	59708697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_59708700_59708900
ONT_simulated_read_5659587	chr8	-	1350	10	ISM	ENSMUSG00000070000.14	ENST00000252771.11	2570	22	5818	0	5818	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	324	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTGCTGCCCTTTGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	72165205	72161568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_72161735_72161973_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113
ONT_simulated_read_5661149	chr7	-	1108	10	ISM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	3467	44596	3467	-44596	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAGACCCTTAGCTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	80449697	80405926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80406013_80407151_80407316_80407921_80408007_80409505_80409685_80410562_80410677_80412245_80412314_80415042_80415120_80416632_80416711_80418056_80418214_80449597
ONT_simulated_read_5661920	chr2	-	1910	7	ISM	ENSMUSG00000026885.14	ENSMUST00000028248.11	3176	10	76502	559	76502	-559	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATCGCATGTCTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	35793134	35641811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_35642505_35674100_35674208_35685368_35685615_35707734_35707834_35779276_35779393_35780283_35780380_35792581
ONT_simulated_read_5664841	chr19	+	731	8	FSM	ENSMUSG00000025157.9	ENST00000345745.9	1099	8	67	301	67	-301	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTGTTACCTTCTAGTC	NA	NA	NA	NA	NA	NA	NA	NA	41926106	41932035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_41926290_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ONT_simulated_read_566490	chr4	+	627	7	ISM	ENSMUSG00000028861.14	ENSMUST00000030675.8	937	8	52	485	52	-485	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCGAAAAGACATGCAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	125940769	125948840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_125940993_125941226_125941272_125942427_125942507_125944272_125944322_125945117_125945203_125947292_125947352_125948753
ONT_simulated_read_5664974	chr2	+	361	2	ISM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	0	4907	0	-4907	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCATTTTCTACGACATGAA	NA	NA	NA	NA	NA	NA	NA	NA	143757239	143780337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_143757568_143780304
ONT_simulated_read_5665712	chr14	+	1832	6	ISM	ENSMUSG00000041408.19	ENSMUST00000090027.11	4185	19	63098	-702	63098	702	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGGGTAAATTTCATAGAT	NA	NA	NA	NA	NA	NA	NA	NA	34459227	34468739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_34459344_34459812_34459978_34461187_34461396_34463013_34463103_34466765_34466862_34467581
ONT_simulated_read_5668115	chr11	+	628	6	ISM	ENSMUSG00000020708.13	ENSMUST00000021049.9	1316	11	0	1176	0	-1115	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGCCCGCGCTGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	106146979	106152770	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731
ONT_simulated_read_5668968	chr8	-	1187	7	ISM	ENSMUSG00000003813.16	ENSMUST00000003911.13	2074	9	1975	593	1975	-334	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	225	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTGCAGCCAGATGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	85565295	85561873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85562304_85562383_85562549_85564088_85564220_85564317_85564397_85564635_85564764_85564901_85564958_85565097
ONT_simulated_read_5671171	chr9	-	1315	7	ISM	ENSMUSG00000011114.19	ENSMUST00000117654.3	1984	9	2900	259	2900	-259	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	661	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGGGCCCAGGAAGTCAAA	NA	NA	NA	NA	NA	NA	NA	NA	37565708	37560317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564058_37564328_37564466_37565511
ONT_simulated_read_5674963	chr6	+	1200	1	FSM	ENSMUSG00000072704.7	ENSMUST00000100864.7	2842	1	583	1059	236	-1059	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAATAAAAAATTATTCTG	NA	NA	NA	NA	NA	NA	NA	NA	133082454	133083654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_133082500_133083700
ONT_simulated_read_5680162	chr4	+	2039	9	ISM	ENSMUSG00000034210.15	ENSMUST00000106522.9	2636	11	0	4408	0	-4408	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCAGCTAGCTGGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	115594975	115621880	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_115596038_115597588_115597738_115603654_115603801_115610117_115610217_115613629_115613741_115616005_115616093_115617066_115617259_115619414_115619496_115621768
ONT_simulated_read_568155	chr8	-	683	4	ISM	ENSMUSG00000048400.14	ENSMUST00000052690.13	1438	6	-129	6390	-129	-6231	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGCTACATAAGCCACCA	NA	NA	NA	NA	NA	NA	NA	NA	96302212	96292150	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_96292345_96297635_96297808_96301764_96301860_96301990
ONT_simulated_read_5682074	chr8	+	1068	8	ISM	ENSMUSG00000050357.10	ENST00000545661.5	4075	37	8506	0	8506	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTCTCCTCCTGCCGCA	NA	NA	NA	NA	NA	NA	NA	NA	106421695	106424775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_106421758_106421839_106422201_106422283_106422407_106423492_106423530_106423655_106423728_106423848_106424071_106424499_106424578_106424662
ONT_simulated_read_5686376	chr17	+	1400	6	ISM	ENSMUSG00000023952.14	ENSMUST00000172170.8	2587	13	4712	543	4712	-543	intron_retention	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGGACTGAAGCAATGGCA	NA	NA	NA	NA	NA	NA	NA	NA	46476703	46479719	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_46476924_46477236_46477373_46477517_46477577_46478148_46478321_46478651_46478817_46479071
ONT_simulated_read_5686417	chr14	+	704	2	ISM	ENSMUSG00000023411.13	ENST00000553469.5	2418	10	33	6863	0	-6863	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAGCTCGGGAGGCCGAG	NA	NA	NA	NA	NA	NA	NA	NA	56062493	56064218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_56062594_56063614
ONT_simulated_read_5689067	chr6	-	265	2	ISM	ENSMUSG00000002797.10	ENST00000514941.1	377	3	5838	0	5838	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1168	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCAAAACTGTCATAACAGA	NA	NA	NA	NA	NA	NA	NA	NA	54963954	54962858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_54962987_54963817
ONT_simulated_read_5689329	chr11	+	331	5	ISM	ENSMUSG00000017801.16	ENSMUST00000107302.8	1826	8	27	3242	4	-3242	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGCCAGCAGCAGGATTT	NA	NA	NA	NA	NA	NA	NA	NA	100978129	100979791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_100978194_100978579_100978617_100979061_100979152_100979423_100979531_100979758
ONT_simulated_read_5690797	chr7	-	470	1	ISM	ENSMUSG00000031090.15	ENSMUST00000033415.15	2641	21	26788	0	26788	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTTATTGATGTGTACG	NA	NA	NA	NA	NA	NA	NA	NA	143349790	143349320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143349300_143349800
ONT_simulated_read_5694723	chr3	-	431	4	ISM	ENSMUSG00000015748.14	ENSMUST00000161476.8	2732	16	19199	3505	15140	-3301	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTGCTGCACAAAGATGT	NA	NA	NA	NA	NA	NA	NA	NA	95743866	95741438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95741515_95742665_95742780_95742955_95743056_95743725
ONT_simulated_read_5696201	chr16	+	666	7	ISM	ENSMUSG00000045983.17	ENST00000392537.6	5215	30	73	13610	-3	-13277	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCTGGCACAGAATCTCA	NA	NA	NA	NA	NA	NA	NA	NA	20491569	20498021	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_20491627_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962
ONT_simulated_read_5697841	chr1	-	888	8	ISM	ENSMUSG00000026235.15	ENST00000409854.5	3436	17	113741	9688	113741	-9688	internal_fragment	TRUE	canonical	NA	NA	NA	NA	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTATCTGATATGAGCTA	NA	NA	NA	NA	NA	NA	NA	NA	77377962	77359646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836
ONT_simulated_read_5698300	chr16	+	4315	3	ISM	ENSMUSG00000022961.19	ENSMUST00000114036.9	7945	5	0	5380	0	-5380	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCATGCTATCACTGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	91444767	91455541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_91444873_91448517_91448685_91451498
ONT_simulated_read_5702061	chr12	+	671	9	ISM	ENSMUSG00000004789.11	ENSMUST00000053811.10	2764	15	25	11275	25	-11275	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGAGGCAGGAGCTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	85157631	85169587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553
ONT_simulated_read_5702497	chr10	+	892	7	ISM	ENSMUSG00000020089.9	ENSMUST00000020286.7	1364	11	15137	0	15137	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	61499467	61509947	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
ONT_simulated_read_5703940	chr1	-	275	3	ISM	ENSMUSG00000026281.16	ENSMUST00000027503.14	1003	5	1023	2274	995	-2126	internal_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTGCTGGACGCTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	93728633	93722571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_93722646_93726101_93726193_93728523
ONT_simulated_read_5705461	chr9	-	686	1	ISM	ENSMUSG00000032475.16	ENSMUST00000116522.8	4476	4	50469	2687	11191	23	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCCATTGTAAATATCAAG	NA	NA	NA	NA	NA	NA	NA	NA	100377718	100377032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_100377000_100377700
ONT_simulated_read_5707589	chr12	-	487	3	ISM	ENSMUSG00000021189.12	ENSMUST00000021606.12	5363	11	25185	4009	15378	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTAAATGTCCCGTTT	NA	NA	NA	NA	NA	NA	NA	NA	101899320	101889168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_101889464_101892742_101892841_101899226
ONT_simulated_read_5709610	chr16	+	1299	7	ISM	ENSMUSG00000002845.15	ENSMUST00000002924.15	2871	9	49	5905	49	-4933	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCATTATGGTGTGGATC	NA	NA	NA	NA	NA	NA	NA	NA	38383222	38406619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582
ONT_simulated_read_5711053	chr17	-	1000	1	ISM	ENSMUSG00000023832.15	ENSMUST00000007005.14	2250	9	16734	124	16358	24	mono-exon	FALSE	NA	NA	NA	NA	NA	408	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATAACAACAGAAACAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	13162900	13161900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_13161900_13162900
ONT_simulated_read_5716511	chr1	-	614	4	ISM	ENSMUSG00000026526.15	ENSMUST00000027810.14	2636	10	10750	7531	10750	-7531	internal_fragment	FALSE	canonical	NA	NA	NA	NA	213	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATATTCGCTTCCTGGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	175442451	175435470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_175435587_175437202_175437369_175439712_175439896_175442302
ONT_simulated_read_5717372	chr16	-	535	1	FSM	ENSMUSG00000093246.3	ENSMUST00000175505.3	88	1	-21	-426	-21	426	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCGGCACGCACCTGCGG	NA	NA	NA	NA	NA	NA	NA	NA	18102522	18101987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_18102000_18102500
ONT_simulated_read_5719029	chr1	-	424	1	NIC	ENSMUSG00000037395.17	novel	1844	12	NA	NA	36056	-57	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAAGTGTATTATTTCTAC	NA	NA	NA	NA	NA	NA	NA	NA	191786168	191785744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_191785700_191786200
ONT_simulated_read_571934	chr5	+	766	7	ISM	ENSMUSG00000016503.19	ENSMUST00000132102.2	1426	8	0	1706	0	-1706	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAGCACATGAAGACTCA	NA	NA	NA	NA	NA	NA	NA	NA	146885514	146890710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657
ONT_simulated_read_5720887	chr9	-	1022	1	ISM	ENSMUSG00000059475.14	ENSMUST00000115562.9	3557	7	21521	1655	6932	-209	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTCATTTCAGATCCAT	NA	NA	NA	NA	NA	NA	NA	NA	20382521	20381499	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_20381500_20382500
ONT_simulated_read_5720954	chr9	-	382	3	ISM	ENSMUSG00000043987.19	ENSMUST00000213154.2	6105	32	44132	10581	44132	-10581	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCACCAGAAGGTTCACCA	NA	NA	NA	NA	NA	NA	NA	NA	45690893	45690136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_45690227_45690440_45690519_45690679
ONT_simulated_read_572208	chr8	-	541	6	ISM	ENSMUSG00000035824.8	ENST00000417693.8	581	7	4629	-38	4629	38	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGCCAGGTTAGCTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	104965453	104954844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_104954984_104955844_104955926_104957176_104957257_104957791_104957881_104963403_104963478_104965375
ONT_simulated_read_5723094	chr5	-	494	1	ISM	ENSMUSG00000029413.15	ENSMUST00000113102.10	2414	11	19244	774	19239	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAACTCTGACTTTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	92406785	92406291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_92406300_92406800
ONT_simulated_read_5724268	chr1	+	989	4	ISM	ENSMUSG00000026150.15	ENST00000409616.5	1073	8	8243	-640	6241	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	NA	NA	NA	NA	NA	NA	NA	82713190	82730111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_82713229_82724803_82724864_82728240_82728326_82729305
ONT_simulated_read_5728193	chr17	-	899	1	ISM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	21124	5701	21067	2224	mono-exon	FALSE	NA	NA	NA	NA	NA	235	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGCTTAAGCAGGCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	30810509	30809610	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_30809600_30810500
ONT_simulated_read_5732136	chr12	-	996	6	FSM	ENSMUSG00000033713.13	ENST00000325117.8	1435	6	24	415	24	-415	multi-exon	FALSE	canonical	NA	NA	NA	NA	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCACCAGCGACTCCATC	NA	NA	NA	NA	NA	NA	NA	NA	99355137	99162944	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_99163073_99175719_99175826_99185856_99185923_99257495_99257561_99307680_99307794_99354619
ONT_simulated_read_5738800	chr8	+	3340	1	ISM	ENSMUSG00000070056.7	ENSMUST00000037666.6	6408	3	0	88312	0	-88312	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGAGTTACAGACCTGCCA	NA	NA	NA	NA	NA	NA	NA	NA	36054951	36058291	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_36055000_36058300
ONT_simulated_read_5738994	chr8	+	1481	12	ISM	ENSMUSG00000031753.17	ENST00000393612.8	2387	18	13	13731	13	-13679	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTAAGAATGGGCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	111573685	111594848	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833
ONT_simulated_read_5741107	chr5	-	518	1	ISM	ENSMUSG00000005103.13	ENSMUST00000005234.13	3089	15	33918	558	33747	216	mono-exon	FALSE	NA	NA	NA	NA	NA	490	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTAGAGCAGGTCTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	38685231	38684713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_38684700_38685200
ONT_simulated_read_5743418	chr3	+	333	1	ISM	ENSMUSG00000078578.10	ENSMUST00000197539.5	2515	7	0	27204	0	-25787	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTTCCCGTCACCCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	135144897	135145230	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_135144900_135145200
ONT_simulated_read_5743978	chr8	-	1541	1	ISM	ENSMUSG00000031858.17	ENSMUST00000168013.3	5323	19	23055	1967	23055	477	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGAGGCAGAGGCATAGC	NA	NA	NA	NA	NA	NA	NA	NA	70472280	70470739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70470700_70472300
ONT_simulated_read_574415	chr11	-	364	1	ISM	ENSMUSG00000020806.16	ENSMUST00000103029.10	3593	19	24779	893	7958	-37	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTGAGAAGTACGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	116490247	116489883	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_116489900_116490200
ONT_simulated_read_5745459	chr7	+	991	14	ISM	ENSMUSG00000015149.15	ENSMUST00000122915.8	1828	15	32	893	0	-308	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGGCTGGGTGACTGTG	NA	NA	NA	NA	NA	NA	NA	NA	28466191	28487192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_28466293_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186
ONT_simulated_read_5746498	chr13	+	650	6	FSM	ENSMUSG00000015671.12	ENST00000445517.1	623	6	-26	-1	0	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATTTTAGTTTTTAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	14787824	14800170	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_14787901_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ONT_simulated_read_5752252	chr13	-	320	1	NIC	ENSMUSG00000058672.8	novel	1610	4	NA	NA	2478	-936	mono-exon	FALSE	NA	NA	NA	NA	NA	302	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTCCATTGACAATGAGG	NA	NA	NA	NA	NA	NA	NA	NA	34259512	34259192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_34259200_34259500
ONT_simulated_read_5752314	chr11	-	2264	1	ISM	ENSMUSG00000051355.19	ENSMUST00000159081.8	4508	3	82332	1651	78946	-1651	mono-exon	FALSE	NA	NA	NA	NA	NA	604	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGGGCTTTTAAACATGA	NA	NA	NA	NA	NA	NA	NA	NA	22850050	22847786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_22847800_22850000
ONT_simulated_read_5752496	chr12	-	317	3	ISM	ENSMUSG00000021036.11	ENSMUST00000021424.5	6710	12	41557	36579	41557	-36579	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGATTACTTTGGCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	87393572	87388410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_87388531_87389417_87389524_87393481
ONT_simulated_read_575503	chr15	-	992	10	ISM	ENSMUSG00000009733.10	ENST00000548115.5	1667	12	23894	0	23834	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTGACTCGGTACAGTC	NA	NA	NA	NA	NA	NA	NA	NA	100425834	100409575	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100420269_100420377_100423447_100423554_100425757
ONT_simulated_read_5762537	chr4	-	846	5	ISM	ENSMUSG00000028706.15	ENSMUST00000165493.8	3920	6	4723	328	4723	-328	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGTGCAAGGTGCCATT	NA	NA	NA	NA	NA	NA	NA	NA	115905854	115891431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_115891509_115892948_115893074_115897265_115897427_115901881_115902037_115905526
ONT_simulated_read_5764271	chr11	-	752	8	ISM	ENSMUSG00000017132.18	ENST00000591455.5	2604	13	8201	4962	8201	-4962	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGGTGATTAAGGCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	118076320	118059962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_118059997_118061651_118061724_118068045_118068123_118073045_118073158_118073590_118073740_118074707_118074821_118075797_118075879_118076206
ONT_simulated_read_5768826	chr9	+	550	1	ISM	ENSMUSG00000032079.13	ENSMUST00000121598.8	2515	4	1538	1199	935	0	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACTCCGGTTAACCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	46181468	46182018	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_46181500_46182000
ONT_simulated_read_5772220	chr9	-	727	6	ISM	ENSMUSG00000032366.16	ENSMUST00000113696.8	1714	8	9918	519	9720	-494	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCATGCAGTTTGCTTAGC	NA	NA	NA	NA	NA	NA	NA	NA	66941271	66930390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157
ONT_simulated_read_5772668	chr6	-	728	5	ISM	ENSMUSG00000040649.16	ENST00000619374.4	1321	8	13518	0	7266	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCTGGATGAAGATAGATC	NA	NA	NA	NA	NA	NA	NA	NA	122436228	122424389	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_122424419_122426786_122426952_122429512_122429723_122433476_122433623_122436050
ONT_simulated_read_5776733	chr7	+	1370	10	NNC	ENSMUSG00000003549.10	novel	1375	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGGCTCTGCGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	19078702	19090449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088255_19088351_19089025_19089098_19089217_19089287_19090343
ONT_simulated_read_5778488	chr6	+	776	3	ISM	ENSMUSG00000001517.15	ENSMUST00000073316.13	4652	8	0	8778	0	-6598	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCCCTGCAGCGTTAAGC	NA	NA	NA	NA	NA	NA	NA	NA	128339929	128344331	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_128340081_128342620_128343164_128344249
ONT_simulated_read_5780852	chr13	+	695	5	ISM	ENSMUSG00000021400.9	ENSMUST00000021832.7	2633	7	4912	548	4912	-548	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTACAAGTACAACCCCATG	NA	NA	NA	NA	NA	NA	NA	NA	32990932	33006044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_32990984_33000235_33000466_33004201_33004358_33005021_33005102_33005866
ONT_simulated_read_5782185	chr4	-	1302	11	ISM	ENSMUSG00000028909.18	ENSMUST00000030741.9	4416	31	49665	3057	32950	-3057	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACCTCCATCGTCATGCT	NA	NA	NA	NA	NA	NA	NA	NA	131515877	131499865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_131499956_131501517_131501692_131503515_131503666_131504092_131504229_131506333_131506489_131507173_131507291_131507385_131507484_131508140_131508178_131514618_131514696_131515076_131515153_131515685
ONT_simulated_read_5783485	chr11	-	658	1	ISM	ENSMUSG00000044502.17	ENSMUST00000058060.14	1394	4	6047	0	5889	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGACGATCTTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	31615838	31615180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_31615200_31615800
ONT_simulated_read_5786342	chr1	-	367	3	ISM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	41060	8483	41060	-8483	internal_fragment	FALSE	canonical	NA	NA	NA	NA	193	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATGCTTAGAGAAGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	128304036	128299926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_128300024_128301673_128301822_128303914
ONT_simulated_read_5786891	chr5	-	314	2	ISM	ENSMUSG00000044339.13	ENSMUST00000053657.13	1073	4	418	1724	418	-1715	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTACACGTTTTCTGGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	114265819	114263710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_114263792_114265586
ONT_simulated_read_5788920	chr19	+	609	4	ISM	ENSMUSG00000040385.8	ENST00000527663.6	1203	6	-7	757	-7	-757	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCCTGCACAAGCATGATT	NA	NA	NA	NA	NA	NA	NA	NA	4242202	4244643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4242271_4242743_4242876_4243020_4243252_4244465
ONT_simulated_read_5789581	chr5	-	656	1	ISM	ENSMUSG00000097216.4	ENST00000660555.1	2300	2	531	1894	531	-1894	mono-exon	FALSE	NA	NA	NA	NA	NA	263	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGGGAAGCCACTCAACAT	NA	NA	NA	NA	NA	NA	NA	NA	57876463	57875807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_57875800_57876500
ONT_simulated_read_579031	chr2	+	204	2	ISM	ENSMUSG00000049401.11	ENSMUST00000029087.4	2449	7	217	4806	217	-4806	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAGATACCGGCACAACT	NA	NA	NA	NA	NA	NA	NA	NA	180231254	180232823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_180231415_180232779
ONT_simulated_read_5791713	chr2	+	2182	13	ISM	ENSMUSG00000040152.9	ENSMUST00000039559.9	5848	22	0	7292	0	-7292	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGACGGGACGCATGACTGC	NA	NA	NA	NA	NA	NA	NA	NA	117942356	117950322	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_117942557_117943095_117943191_117943450_117944011_117944814_117944891_117945131_117945335_117945428_117945552_117946310_117946405_117947964_117948139_117948642_117948820_117949129_117949304_117949559_117949688_117949802_117949956_117950297
ONT_simulated_read_5792464	chr14	-	1194	1	FSM	ENSMUSG00000115801.2	ENSMUST00000226445.2	93147	1	22475	69478	22475	-69478	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACCACAACACTGGCGACA	NA	NA	NA	NA	NA	NA	NA	NA	44852183	44850989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_44851000_44852200
ONT_simulated_read_57926	chr2	-	1575	1	ISM	ENSMUSG00000047030.16	ENSMUST00000057627.16	4012	3	8341	1839	8299	-1539	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCACCAGGAGTGGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	167326466	167324891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_167324900_167326500
ONT_simulated_read_5792643	chr5	+	248	1	ISM	ENSMUSG00000052139.19	ENSMUST00000201352.4	1888	12	0	387031	0	-386808	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCTCCGGAGAGGGCGGG	NA	NA	NA	NA	NA	NA	NA	NA	31855027	31855275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31855000_31855300
ONT_simulated_read_5794049	chr10	+	1117	1	ISM	ENSMUSG00000020205.9	ENSMUST00000164773.2	1949	2	0	1243	0	-1243	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCCCAACCTCAGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	111342146	111343263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_111342100_111343300
ONT_simulated_read_5794528	chr9	+	153	1	ISM	ENSMUSG00000084786.10	ENSMUST00000129414.9	2114	5	1022	2472	269	-2277	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCAAGCACAGGGTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	20555635	20555788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_20555600_20555800
ONT_simulated_read_5794595	chrX	-	815	1	NIC	ENSMUSG00000046032.17	novel	1114	6	NA	NA	8692	-1084	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTAGCTAATGAGTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	100257463	100256648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_-_100256600_100257500
ONT_simulated_read_579472	chr13	-	1321	1	ISM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	22822	5610	22822	-5610	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTAATGAGAGGAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	9023297	9021976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_9022000_9023300
ONT_simulated_read_5798383	chr7	-	308	1	ISM	ENSMUSG00000003099.12	ENSMUST00000003183.12	2072	13	22776	193	22662	-179	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCTCCTCCCCTGGTAAA	NA	NA	NA	NA	NA	NA	NA	NA	16739065	16738757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_16738800_16739100
ONT_simulated_read_579884	chr8	-	1447	10	NNC	ENSMUSG00000035770.9	novel	4627	13	NA	NA	5236	58	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAAAGGAGACTAGGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	105164200	105146914	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_-_105147307_105148918_105149036_105149744_105149863_105150217_105150260_105152070_105152131_105152590_105152703_105154677_105154814_105156046_105156141_105157032_105157203_105163994
ONT_simulated_read_5800259	chr12	-	1639	8	ISM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	1597	534	1597	-534	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGCATGGAAGAAGTAGACT	NA	NA	NA	NA	NA	NA	NA	NA	110661126	110657995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004
ONT_simulated_read_5801151	chr6	+	314	1	NIC	ENSMUSG00000029860.17	novel	3188	11	NA	NA	8801	591	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACATTGCAGCCAGCACGG	NA	NA	NA	NA	NA	NA	NA	NA	42335773	42336087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_+_42335800_42336100
ONT_simulated_read_5801561	chr11	+	762	5	ISM	ENSMUSG00000020520.15	ENSMUST00000066987.14	4715	12	23	21855	0	-19074	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGCATCAGCTGCCACCG	NA	NA	NA	NA	NA	NA	NA	NA	57536290	57656485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_57536544_57612120_57612224_57616348_57616488_57627803_57627971_57656385
ONT_simulated_read_5802178	chr1	-	1844	6	ISM	ENSMUSG00000026277.15	ENSMUST00000027498.14	4249	12	9778	1566	9778	-1566	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	225	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCAGCCCTGGAGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	93553666	93549038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502
ONT_simulated_read_580575	chr17	-	558	3	ISM	ENSMUSG00000034868.10	ENSMUST00000233004.2	1001	4	1315	245	1315	-245	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	463	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACACACACACCCCATAGG	NA	NA	NA	NA	NA	NA	NA	NA	71284212	71281265	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_71281492_71282453_71282616_71284042
ONT_simulated_read_5806405	chr17	-	989	1	NIC	ENSMUSG00000019578.12	novel	2949	11	NA	NA	6344	-651	mono-exon	FALSE	NA	NA	NA	NA	NA	444	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGCAGCTCTACAAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	56375684	56374695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_56374700_56375700
ONT_simulated_read_5806592	chr17	-	479	1	ISM	ENSMUSG00000024218.14	ENSMUST00000114848.8	2207	6	999	6643	-519	-6105	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCGGCGCGACGACGAGCC	NA	NA	NA	NA	NA	NA	NA	NA	28127217	28126738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_28126700_28127200
ONT_simulated_read_5806920	chr17	-	2267	1	ISM	ENSMUSG00000023988.9	ENSMUST00000024783.9	3854	7	9619	276	9619	-276	mono-exon	FALSE	NA	NA	NA	NA	NA	277	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTAGGGCTTGCCCTCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	47912798	47910531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_47910500_47912800
ONT_simulated_read_5807083	chr1	-	310	1	ISM	ENSMUSG00000016200.15	ENSMUST00000215093.2	9274	9	138155	6078	129399	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2077	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGGAAGTCGGAAGACGG	NA	NA	NA	NA	NA	NA	NA	NA	192579928	192579618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_192579600_192579900
ONT_simulated_read_580817	chr4	-	554	2	ISM	ENSMUSG00000055296.15	ENST00000374586.8	2946	18	61210	0	61198	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCTGGATGACCTACTAT	NA	NA	NA	NA	NA	NA	NA	NA	56886213	56879934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_56880293_56886017
ONT_simulated_read_5809831	chr16	-	954	5	ISM	ENSMUSG00000058240.15	ENSMUST00000117644.8	1727	12	33453	-20	22120	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTCTGAATTTCTCCGA	NA	NA	NA	NA	NA	NA	NA	NA	91492237	91486209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148
ONT_simulated_read_5811044	chr8	+	963	5	ISM	ENSMUSG00000038497.8	ENST00000434316.7	2676	12	18493	294	18493	-294	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	200	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAAGCCATTATATTTAT	NA	NA	NA	NA	NA	NA	NA	NA	13360214	13371216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_13360341_13363805_13363957_13368842_13368923_13369762_13369913_13370760
ONT_simulated_read_5811162	chr19	+	1273	8	ISM	ENSMUSG00000034820.5	ENST00000439958.8	3475	10	0	7937	0	-1352	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAAGGACTGTCTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	10502629	10517082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_10502692_10503315_10503425_10509144_10509364_10510183_10510288_10510656_10510803_10512467_10512883_10514162_10514282_10516983
ONT_simulated_read_5811230	chr10	-	767	4	ISM	ENSMUSG00000015755.17	ENST00000636456.1	2972	6	44720	1255	44687	-1255	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCTGACGGGAGGAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	7787307	7782905	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_7783342_7785810_7785892_7786852_7786947_7787151
ONT_simulated_read_5813460	chr6	-	1161	9	ISM	ENSMUSG00000041540.17	ENST00000537393.5	2687	15	92760	28631	92760	-28345	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGGGAAGGTGGCCGTGGT	NA	NA	NA	NA	NA	NA	NA	NA	144062380	143807166	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_143807256_143819698_143819877_143853112_143853260_143887076_143887163_143906522_143906644_143968894_143968964_143974005_143974179_143986994_143987082_144062169
ONT_simulated_read_5815408	chr6	-	360	3	ISM	ENSMUSG00000004631.16	ENST00000642394.1	1386	9	57339	94	57328	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACTGTGTTGAGAACCAA	NA	NA	NA	NA	NA	NA	NA	NA	4689767	4674505	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_4674633_4678066_4678111_4689578
ONT_simulated_read_5821526	chr10	+	1620	3	ISM	ENSMUSG00000038332.14	ENSMUST00000099931.11	3809	10	0	13417	0	-13417	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGAATCATGGTTTGTA	NA	NA	NA	NA	NA	NA	NA	NA	41685930	41771003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_41687297_41770037_41770104_41770815
ONT_simulated_read_5822569	chr18	-	483	3	ISM	ENSMUSG00000073542.4	ENSMUST00000097542.4	3576	12	3975	15675	3853	-14443	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAGGAGGTAGTGAACAC	NA	NA	NA	NA	NA	NA	NA	NA	67770431	67766544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_67766619_67767824_67768011_67770208
ONT_simulated_read_5824259	chr11	-	699	7	ISM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	653	3990	653	-3990	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCTTGCGAGCTGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	106146252	106143957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145
ONT_simulated_read_5825468	chr10	-	1624	5	NNC	ENSMUSG00000019942.14	novel	4375	8	NA	NA	4980	758	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGTTTACCAGTACCTC	NA	NA	NA	NA	NA	NA	NA	NA	69180992	69173377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_69174427_69176310_69176453_69176544_69176705_69178369_69178541_69180890
ONT_simulated_read_5827770	chr17	-	719	1	ISM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	4877	0	4877	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1928	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGCTTGTGTTCTGGCGC	NA	NA	NA	NA	NA	NA	NA	NA	24383558	24382839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24382800_24383600
ONT_simulated_read_5827821	chrX	+	682	6	FSM	ENSMUSG00000000355.14	ENST00000371315.3	1127	6	445	0	445	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTGTGTCTGTGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	37690175	37702227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_37690275_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
ONT_simulated_read_5831369	chr3	-	1046	1	ISM	ENSMUSG00000034109.16	ENSMUST00000038563.14	5546	15	78752	2048	78752	527	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGATAGGAAAGCATGCGA	NA	NA	NA	NA	NA	NA	NA	NA	75785484	75784438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_75784400_75785500
ONT_simulated_read_5833109	chr7	-	455	4	ISM	ENSMUSG00000030750.14	ENSMUST00000033006.14	1120	8	20337	134	20337	-134	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCACTAGCTGTGTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	125070431	125066945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_125067016_125067450_125067572_125068200_125068318_125070284
ONT_simulated_read_5833873	chr4	+	486	6	ISM	ENSMUSG00000028886.16	ENST00000373871.8	2355	17	6	41105	6	-41105	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACCTGCACTACAGGG	NA	NA	NA	NA	NA	NA	NA	NA	132384010	132408135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_132384100_132389205_132389250_132394465_132394546_132397499_132397567_132400206_132400344_132408066
ONT_simulated_read_5834138	chr15	-	1738	4	ISM	ENSMUSG00000089715.13	ENSMUST00000109627.8	5806	5	739	3513	277	428	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTTTTGAAGGTGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	79718150	79711609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79713180_79717712_79717780_79717902_79717969_79718115
ONT_simulated_read_5835621	chr11	-	866	6	ISM	ENSMUSG00000020439.18	ENST00000358743.5	3013	20	4710	12538	4710	-12538	internal_fragment	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACACTTCCTCCCACAAG	NA	NA	NA	NA	NA	NA	NA	NA	3482677	3480060	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597
ONT_simulated_read_5836251	chr11	-	1407	11	ISM	ENSMUSG00000038909.17	ENST00000510819.5	1768	12	4023	176	3433	7	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	313	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGCACTGTTCTGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	95196995	95166491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95196874
ONT_simulated_read_5837519	chrX	-	1163	6	ISM	ENSMUSG00000031174.18	ENSMUST00000115534.8	2795	17	34415	0	34415	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	10048277	10024454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193
ONT_simulated_read_5837904	chr1	-	1048	8	ISM	ENSMUSG00000016179.12	ENST00000009105.5	2349	12	7059	1070	7059	-1070	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCTGGTGGCAGCACCCA	NA	NA	NA	NA	NA	NA	NA	NA	193037372	193029724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_193029756_193030364_193030793_193031026_193031115_193032582_193032662_193033297_193033411_193034675_193034752_193036299_193036424_193037263
ONT_simulated_read_5838767	chr11	-	2068	8	ISM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	2996	768	2996	-768	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1041	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAAAGACTGTTAGCCCAA	NA	NA	NA	NA	NA	NA	NA	NA	106676362	106671948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220
ONT_simulated_read_5840814	chr8	-	280	1	NIC	ENSMUSG00000003848.15	novel	1658	9	NA	NA	11865	-416	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGCATGCAAAGCAGACT	NA	NA	NA	NA	NA	NA	NA	NA	108139816	108139536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_108139500_108139800
ONT_simulated_read_584206	chr7	-	165	2	ISM	ENSMUSG00000036751.8	ENSMUST00000208838.2	354	3	2631	93	2631	-93	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	308	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGATAGAAAAGGGGGACCT	NA	NA	NA	NA	NA	NA	NA	NA	30322908	30316491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_30316588_30322839
ONT_simulated_read_5842603	chr1	+	461	4	ISM	ENSMUSG00000026429.10	ENST00000646651.1	657	6	2038	160	2038	-160	internal_fragment	FALSE	canonical	NA	NA	NA	NA	167	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTATTTGATGACAAA	NA	NA	NA	NA	NA	NA	NA	NA	134899016	134901738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_134899094_134899638_134899738_134899843_134899928_134901537
ONT_simulated_read_584326	chr7	+	820	6	ISM	ENSMUSG00000063065.14	ENST00000395202.5	1005	7	1098	-1	152	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAACAGACACCCCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	126359920	126364017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_126360086_126362206_126362397_126362569_126362687_126362912_126363028_126363705_126363816_126363894
ONT_simulated_read_5848246	chrX	+	2377	13	ISM	ENSMUSG00000031065.15	ENSMUST00000033380.7	3120	16	5865	0	5865	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTGGTTATAAATCATCAA	NA	NA	NA	NA	NA	NA	NA	NA	20560521	20566119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562001_20562256_20562381_20562585_20562707_20562786_20562885_20562969_20563076_20563160_20563204_20563358_20563450_20564689_20564768_20564847
ONT_simulated_read_5857609	chr10	-	368	3	ISM	ENSMUSG00000090247.8	ENSMUST00000026405.10	550	4	797	33	797	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGCCACGAATAAAAACAC	NA	NA	NA	NA	NA	NA	NA	NA	128758596	128755815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128755977_128756427_128756561_128758522
ONT_simulated_read_5859335	chr10	+	426	1	ISM	ENSMUSG00000020044.14	ENSMUST00000020234.14	4722	5	0	48709	0	-48709	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCGGCAACTTTGAAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	86136235	86136661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_86136200_86136700
ONT_simulated_read_5861797	chr7	-	1204	1	ISM	ENSMUSG00000030556.14	ENSMUST00000053950.10	2923	10	130072	546	130048	-546	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCCTGACTGTAATTCT	NA	NA	NA	NA	NA	NA	NA	NA	67164907	67163703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_67163700_67164900
ONT_simulated_read_5861912	chr3	-	408	1	ISM	ENSMUSG00000015748.14	ENSMUST00000015892.14	2933	16	24930	424	20739	74	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATCCTAGTAGTTTAAGT	NA	NA	NA	NA	NA	NA	NA	NA	95738267	95737859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95737900_95738300
ONT_simulated_read_5864727	chr8	-	2071	16	ISM	ENSMUSG00000061313.11	ENSMUST00000033975.9	4246	18	0	7666	0	-5382	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTTTCAATGAATATTTA	NA	NA	NA	NA	NA	NA	NA	NA	26244308	26223038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26223150_26224742_26224914_26225035_26225139_26225771_26225928_26226033_26226118_26228238_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244212
ONT_simulated_read_5866815	chr17	-	1175	5	ISM	ENSMUSG00000023973.14	ENSMUST00000059844.13	1908	6	4707	454	4688	-454	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	302	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACCCCCCTGGAAAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	47058433	47047084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_47047835_47048100_47048219_47048652_47048776_47054111_47054209_47058346
ONT_simulated_read_5867078	chr11	-	271	1	ISM	ENSMUSG00000020375.10	ENSMUST00000020643.4	2688	18	41395	174	41395	-174	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTCCTACCCACGTCCC	NA	NA	NA	NA	NA	NA	NA	NA	50280557	50280286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_50280300_50280600
ONT_simulated_read_5867489	chr19	-	1594	11	ISM	ENSMUSG00000024660.10	ENSMUST00000025562.9	3236	18	15062	202	10971	179	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGGAGGATGGGCTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	9861853	9849861	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855161_9855491_9855613_9855682_9855793_9861062_9861198_9861268_9861384_9861801
ONT_simulated_read_5867875	chrX	-	2401	1	ISM	ENSMUSG00000031373.5	ENSMUST00000033739.5	3436	8	48651	124	48651	-124	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGGCCTAGAACTCAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	162762342	162759941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_162759900_162762300
ONT_simulated_read_5867915	chr17	-	1228	1	ISM	ENSMUSG00000057835.8	ENSMUST00000079642.8	2018	4	12309	502	12309	-502	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCTATGAATGTAATCAGT	NA	NA	NA	NA	NA	NA	NA	NA	56173621	56172393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56172400_56173600
ONT_simulated_read_5868133	chr2	-	317	1	ISM	ENSMUSG00000027131.4	ENSMUST00000028551.4	983	5	4700	0	4191	0	mono-exon	FALSE	NA	NA	NA	NA	NA	263	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAAGTTCCCCTTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	112193672	112193355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_112193400_112193700
ONT_simulated_read_587090	chr1	+	1520	12	ISM	ENSMUSG00000062590.14	ENSMUST00000113309.9	3555	25	41592	668	36397	-668	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGATTCCAAGCTAGACACG	NA	NA	NA	NA	NA	NA	NA	NA	86124111	86203751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86172287_86172393_86179998_86180115_86184947_86185085_86189760_86189888_86202104_86202278_86203381
ONT_simulated_read_5873044	chr6	-	757	2	ISM	ENSMUSG00000068335.7	ENSMUST00000089651.6	1807	5	1090	521	1090	-521	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAAGCCTGCTCCTGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	83009362	83008435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_83009042_83009211
ONT_simulated_read_5874913	chr7	-	191	2	ISM	ENSMUSG00000030528.13	ENST00000648453.1	4400	21	44944	11671	44944	-11671	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAATATTATAAGATTTG	NA	NA	NA	NA	NA	NA	NA	NA	80119496	80116629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80116662_80119337
ONT_simulated_read_5875447	chr17	-	3583	13	ISM	ENSMUSG00000024079.5	ENSMUST00000024884.5	4313	16	8533	264	8533	-264	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTAATAGTTGTTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	79181469	79160256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_79162691_79162771_79162829_79163995_79164098_79165929_79166062_79171267_79171449_79172730_79172851_79173743_79173867_79176185_79176237_79176904_79176940_79177915_79177965_79178082_79178163_79178577_79178699_79181371
ONT_simulated_read_587618	chr5	+	1347	11	ISM	ENSMUSG00000029484.13	ENSMUST00000031447.12	1595	13	17681	0	17562	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGTGCTTCTGTTACTT	NA	NA	NA	NA	NA	NA	NA	NA	96958924	96993825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_96958997_96960700_96960796_96964199_96964314_96968260_96968352_96972745_96972826_96976206_96976264_96976555_96976650_96978251_96978348_96982633_96982693_96986151_96986275_96993359
ONT_simulated_read_587688	chr9	-	879	6	ISM	ENSMUSG00000048537.17	ENST00000600882.6	5234	22	23287	11422	-2159	-11422	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGGCAGCAGGTGGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	44615189	44609030	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44612242_44612384_44615099
ONT_simulated_read_5878150	chr6	-	706	2	ISM	ENSMUSG00000046806.14	ENSMUST00000115007.9	3326	4	2467	2207	2416	-352	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAACTGCCCACAGTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	34852528	34850981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_34851631_34852471
ONT_simulated_read_5878535	chr15	-	528	4	ISM	ENSMUSG00000022629.18	ENST00000544797.6	4883	33	55789	2797	55789	-2797	internal_fragment	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTCAAGGCGATAACCTAT	NA	NA	NA	NA	NA	NA	NA	NA	90826472	90821445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_90821535_90823187_90823306_90824633_90824799_90826316
ONT_simulated_read_5878931	chr9	-	790	8	ISM	ENSMUSG00000032503.19	ENSMUST00000162065.8	2996	18	0	92493	0	3211	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGAGATAACTCTAGTATTG	NA	NA	NA	NA	NA	NA	NA	NA	112014837	111986794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_111986867_112005162_112005304_112006001_112006062_112006725_112006805_112008095_112008241_112012562_112012653_112013336_112013379_112014676
ONT_simulated_read_5880779	chr13	-	495	1	FSM	ENSMUSG00000069272.7	ENSMUST00000102969.6	704	1	0	209	0	-209	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAAATAAGATCTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	23755394	23754899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_23754900_23755400
ONT_simulated_read_5882587	chr19	-	1269	11	NNC	ENSMUSG00000025085.17	novel	5907	21	NA	NA	57531	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGGGGCTTCTTTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	57049814	57025397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_-_57025770_57027838_57027920_57028918_57028994_57030346_57030404_57031428_57031494_57032227_57032331_57033312_57033405_57035356_57035498_57037893_57037942_57039561_57039667_57049684
ONT_simulated_read_5886521	chr10	-	3440	1	ISM	ENSMUSG00000060002.15	ENSMUST00000117440.8	4863	9	31120	0	30965	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTAAAAGTAGTTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	88308815	88305375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_88305400_88308800
ONT_simulated_read_5887308	chr12	+	1398	10	ISM	ENSMUSG00000020661.16	ENST00000264709.7	6171	23	101	13917	101	-10916	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACAGTGATGAAAGTGACA	NA	NA	NA	NA	NA	NA	NA	NA	3856526	3946926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_3856603_3885026_3885261_3899634_3899740_3915984_3916253_3922834_3922879_3923281_3923429_3945542_3945759_3945989_3946149_3946577_3946686_3946885
ONT_simulated_read_58884	chr10	-	1951	10	ISM	ENSMUSG00000019813.17	ENSMUST00000019951.16	2177	11	63676	201	0	178	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATATGTGATTTACATCC	NA	NA	NA	NA	NA	NA	NA	NA	41621927	41595042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766
ONT_simulated_read_5888940	chr15	-	160	2	ISM	ENSMUSG00000063480.9	ENSMUST00000080622.9	2077	3	3593	1793	3593	-1793	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTGAGCCCTTGGAGATC	NA	NA	NA	NA	NA	NA	NA	NA	81928206	81926518	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81926570_81928097
ONT_simulated_read_5890299	chr14	-	796	6	ISM	ENSMUSG00000022090.11	ENSMUST00000153735.8	1578	10	5216	316	2879	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGGTGATAGCAGGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	70409052	70401995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_70402243_70403538_70403657_70405109_70405238_70405413_70405494_70408668_70408748_70408908
ONT_simulated_read_589436	chr7	-	1148	12	ISM	ENSMUSG00000030630.17	ENSMUST00000032865.17	1585	14	4814	0	4814	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTTCTTGGTTTTAGC	NA	NA	NA	NA	NA	NA	NA	NA	84250336	84234366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84246484_84248261_84248353_84249984_84250035_84250240
ONT_simulated_read_5895252	chr2	-	1452	3	ISM	ENSMUSG00000056941.18	ENSMUST00000109782.2	1343	10	10926	-679	10926	679	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTGGTGGAAGGAGACCA	NA	NA	NA	NA	NA	NA	NA	NA	153463734	153460074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_153461433_153462365_153462415_153463689
ONT_simulated_read_5895378	chr15	-	459	5	ISM	ENSMUSG00000000555.9	ENSMUST00000023128.8	4382	30	16121	3640	16121	-3640	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAGTTCTACTGCCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	103259069	103256352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_103256403_103258038_103258192_103258591_103258698_103258800_103258882_103259000
ONT_simulated_read_589566	chr13	-	1228	1	FSM	ENSMUSG00000052957.9	ENSMUST00000223933.2	1155	1	-424	351	0	-351	mono-exon	FALSE	NA	NA	NA	NA	NA	467	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCGAATCGGTCAAAGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	60325179	60323951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_60324000_60325200
ONT_simulated_read_5896001	chr2	-	1596	1	ISM	ENSMUSG00000026754.17	ENSMUST00000039165.15	4869	23	47685	106	47632	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGCTTTGTACTAAGTAT	NA	NA	NA	NA	NA	NA	NA	NA	38907868	38906272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_38906300_38907900
ONT_simulated_read_5897832	chr15	+	2385	1	FSM	ENSMUSG00000116238.2	ENSMUST00000230810.2	3039	1	0	654	0	-654	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACTTTTCAGAGAAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	76462024	76464409	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_76462000_76464400
ONT_simulated_read_5898952	chr12	+	641	5	ISM	ENSMUSG00000057469.9	ENSMUST00000020908.9	2418	7	187	4599	-123	-55	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGCAGTGAAGGCTCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	16861164	16872154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_16861317_16866400_16866456_16868841_16869059_16870229_16870386_16872093
ONT_simulated_read_5900467	chr7	-	424	1	ISM	ENSMUSG00000007837.12	ENSMUST00000210690.2	1623	8	8485	185	7460	-156	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATAAAGGTGGGGGGCG	NA	NA	NA	NA	NA	NA	NA	NA	44703616	44703192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44703200_44703600
ONT_simulated_read_5901249	chr17	+	447	3	ISM	ENSMUSG00000024338.16	ENST00000395339.7	948	6	1176	533	1176	-533	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGAGACCAATGCGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	34418544	34419889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34418657_34419114_34419245_34419684
ONT_simulated_read_5901267	chrX	+	972	6	ISM	ENSMUSG00000031375.18	ENSMUST00000169489.2	1574	9	8422	0	8422	0	3prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACGAGTCTGTGTGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	72535662	72539535	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_72535768_72536328_72536440_72536568_72536663_72536805_72536945_72538204_72538623_72539430
ONT_simulated_read_5903020	chr15	-	225	2	ISM	ENSMUSG00000022568.18	ENST00000674084.1	5146	35	20318	1616	20318	-1616	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGAGTCCCCAGATGATC	NA	NA	NA	NA	NA	NA	NA	NA	75920925	75920624	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75920707_75920782
ONT_simulated_read_5903161	chr6	-	666	5	ISM	ENSMUSG00000030316.14	ENSMUST00000032461.12	1168	8	12451	0	12451	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCACTCTGACTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	115002386	114981341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234
ONT_simulated_read_590372	chr3	+	701	5	NIC	ENSMUSG00000042747.13	novel	1172	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACCTAACTGGTGTGCGT	NA	NA	NA	NA	NA	NA	NA	NA	89153740	89157213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_+_89153823_89154087_89154240_89154371_89154436_89156380_89156448_89156877
ONT_simulated_read_590664	chr6	-	1570	12	ISM	ENSMUSG00000062995.13	ENSMUST00000115520.8	1876	15	23687	0	23402	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTCACTCCTGTTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	8754752	8630526	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_8630798_8643972_8644243_8653496_8653536_8653629_8653693_8656361_8656409_8658219_8658315_8670693_8670793_8672297_8672424_8737016_8737216_8742254_8742379_8749694_8749768_8754588
ONT_simulated_read_5907819	chr18	+	774	4	ISM	ENSMUSG00000037815.8	ENST00000540387.5	2616	12	35608	720	35608	-546	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	285	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGAAAAAAAAAGCTTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	35383994	35387104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_35384081_35384218_35384325_35385668_35385804_35386657
ONT_simulated_read_5907824	chr14	-	1208	1	FSM	ENSMUSG00000115801.2	ENSMUST00000226445.2	93147	1	20217	71722	20217	-71722	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATAATCATATCCACAGG	NA	NA	NA	NA	NA	NA	NA	NA	44854441	44853233	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_44853200_44854400
ONT_simulated_read_5907984	chrX	-	872	8	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	53668	43153	53668	-43153	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACACAACCATCTCAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	40947110	40927020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940
ONT_simulated_read_5908100	chr3	-	215	1	ISM	ENSMUSG00000047557.3	ENSMUST00000058981.3	1112	6	5614	100	5614	-100	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCATAGATTCCATAATAA	NA	NA	NA	NA	NA	NA	NA	NA	67365645	67365430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_67365400_67365600
ONT_simulated_read_590902	chr3	+	907	7	ISM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	10060	76	10060	-76	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	222	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGACAAGTACAAGTTACTG	NA	NA	NA	NA	NA	NA	NA	NA	32772715	32781046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
ONT_simulated_read_5910818	chr10	-	683	3	ISM	ENSMUSG00000020198.9	ENSMUST00000020420.9	4805	31	22875	9594	22875	-9594	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGAGCGCCTTGTTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	80555223	80552383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80552454_80553532_80553765_80554842
ONT_simulated_read_5912941	chr4	+	454	3	ISM	ENSMUSG00000005994.15	ENST00000381136.2	817	5	9002	60	9002	-60	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	513	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATCAACGCTATGCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	80764824	80769059	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_80764988_80767966_80768114_80768915
ONT_simulated_read_5913988	chr10	+	641	1	FSM	ENSMUSG00000095478.3	ENSMUST00000178707.3	561	1	0	-80	0	80	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGGAGTTCTTAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	28906123	28906764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_28906100_28906800
ONT_simulated_read_5915273	chr11	-	384	4	ISM	ENSMUSG00000018442.14	ENSMUST00000171041.8	1466	7	5212	477	4613	-477	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCAGATGAGGATCCCAAT	NA	NA	NA	NA	NA	NA	NA	NA	70905455	70901235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375
ONT_simulated_read_5915368	chr15	-	470	1	Antisense	novelGene_ENSMUSG00000001289.13_AS_novelGene_ENSMUSG00000001285.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1251	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACAAGAAAAGAAGGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	102240176	102239706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr15_-_102239700_102240200
ONT_simulated_read_5916077	chr16	-	653	4	ISM	ENSMUSG00000003527.10	ENSMUST00000232423.2	2785	10	4956	1277	4956	-1277	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTTTCTACCACTCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	17724223	17719849	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17720188_17720681_17720798_17722865_17722976_17724134
ONT_simulated_read_5916360	chr1	-	1714	12	ISM	ENSMUSG00000025968.17	ENST00000432169.5	1951	15	7072	-52	7072	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	236	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATTTAAAGTTATACTAT	NA	NA	NA	NA	NA	NA	NA	NA	63202996	63182893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825
ONT_simulated_read_591937	chr7	-	296	1	ISM	ENSMUSG00000060860.9	ENSMUST00000079496.9	1238	4	4139	142	4139	-142	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGCTCTTTCTCCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	4811450	4811154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_4811200_4811400
ONT_simulated_read_5920769	chr7	-	736	1	ISM	ENSMUSG00000048677.10	ENSMUST00000058022.6	2993	25	29353	0	29353	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTGGCCCTGTGTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	144808395	144807659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_144807700_144808400
ONT_simulated_read_5924304	chr7	-	260	2	ISM	ENSMUSG00000030737.18	ENST00000454962.6	2068	10	17580	23263	6802	-22692	internal_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGATGCCCAAGGAGAAAC	NA	NA	NA	NA	NA	NA	NA	NA	99338214	99331977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_99332093_99338069
ONT_simulated_read_5925395	chr3	-	684	6	ISM	ENSMUSG00000028089.6	ENST00000652587.1	1361	10	12858	81	12858	-81	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGGGTTTTAACTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	97478383	97469971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219
ONT_simulated_read_5928694	chr3	-	418	1	ISM	ENSMUSG00000050931.8	ENSMUST00000090246.5	5801	6	21639	3892	21639	-3892	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCTGAAGAGGTGGCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	131116943	131116525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_131116500_131116900
ONT_simulated_read_5929683	chr14	-	1905	3	ISM	ENSMUSG00000021959.17	ENSMUST00000173990.8	3834	7	43074	3461	31269	-3461	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCGACCTGGATGGTCATA	NA	NA	NA	NA	NA	NA	NA	NA	57940488	57934461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_57934956_57936714_57938016_57940378
ONT_simulated_read_593182	chr5	-	792	4	ISM	ENSMUSG00000029596.14	ENSMUST00000052258.14	1225	8	12068	16	12068	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTGTGGCTCCCTGGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	120598760	120596266	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_120596617_120597509_120597635_120597820_120598049_120598671
ONT_simulated_read_5934664	chr6	-	1042	1	ISM	ENSMUSG00000045009.10	ENSMUST00000204268.3	3741	4	5842	1361	5777	-705	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGCCTGGACATCAGCAAAA	NA	NA	NA	NA	NA	NA	NA	NA	113473002	113471960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113472000_113473000
ONT_simulated_read_5937783	chr5	+	1267	12	ISM	ENSMUSG00000029146.15	ENSMUST00000031029.15	2018	15	2146	361	2146	-361	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACGTTAGGGGAGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	31352716	31355883	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
ONT_simulated_read_5938910	chr17	+	628	1	ISM	ENSMUSG00000044469.9	ENSMUST00000077788.7	2379	2	9647	1204	9647	-1204	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTACAACAGGTCCTTATG	NA	NA	NA	NA	NA	NA	NA	NA	56479123	56479751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_56479100_56479800
ONT_simulated_read_5943177	chr9	-	1605	11	ISM	ENSMUSG00000032534.19	ENST00000683190.1	1971	13	778	1635	778	-1635	internal_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATGCAGAGCTTAAGTAAA	NA	NA	NA	NA	NA	NA	NA	NA	102496187	102467541	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_102467733_102471706_102471794_102473320_102473519_102475367_102475483_102478515_102478654_102479616_102479748_102480040_102480275_102484524_102484639_102490493_102490617_102492473_102492570_102496009
ONT_simulated_read_5944239	chr2	-	1032	7	ISM	ENSMUSG00000025816.16	ENSMUST00000102981.10	2448	12	12742	895	12629	-853	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGGAACAGGCTGAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	5887501	5876692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651_5881813_5882665_5882820_5887391
ONT_simulated_read_5944970	chr4	+	673	7	ISM	ENSMUSG00000059939.14	ENSMUST00000169550.8	2660	10	0	3677	0	-2633	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCTCATCCTCTCTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	156194454	156208043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991
ONT_simulated_read_5946599	chr19	+	754	6	ISM	ENSMUSG00000024851.15	ENSMUST00000100022.4	4512	23	10539	1093	10539	-1093	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGGTAAGACCTAAGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	4161160	4162872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4161190_4161581_4161699_4161865_4162015_4162100_4162251_4162326_4162511_4162747
ONT_simulated_read_594674	chr9	-	377	4	FSM	ENSMUSG00000032508.9	ENST00000417037.8	874	4	383	114	275	-114	multi-exon	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGGACTTTCCCAGTAT	NA	NA	NA	NA	NA	NA	NA	NA	119168757	119166532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_119166577_119166819_119166912_119167071_119167253_119168697
ONT_simulated_read_594804	chr7	-	1103	3	ISM	ENSMUSG00000030551.15	ENST00000394171.6	3507	4	-42	2497	-42	0	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAACTCCTGTGTTGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	70009643	70004186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_70004680_70007510_70008039_70009561
ONT_simulated_read_5950321	chr5	-	3649	14	ISM	ENSMUSG00000041890.18	ENSMUST00000112185.9	5032	19	9018	761	8957	-757	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCAGACGCTCTCAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	114902538	114866228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407
ONT_simulated_read_5953994	chr14	-	937	1	ISM	ENSMUSG00000033111.17	ENSMUST00000224389.2	2444	5	17363	678	16231	569	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGTGTCACAATACAAAATG	NA	NA	NA	NA	NA	NA	NA	NA	10168146	10167209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_10167200_10168100
ONT_simulated_read_595524	chr7	-	3623	3	ISM	ENSMUSG00000006763.15	ENSMUST00000143082.4	4728	12	17720	0	17720	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	46342384	46335531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_46338880_46339226_46339320_46342202
ONT_simulated_read_5955251	chr7	-	652	1	ISM	ENSMUSG00000019370.11	ENSMUST00000019514.10	2290	6	7166	918	6961	617	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCATAGAGTGGACGGCAC	NA	NA	NA	NA	NA	NA	NA	NA	16650873	16650221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_16650200_16650900
ONT_simulated_read_5956275	chr11	-	528	3	FSM	ENSMUSG00000018168.9	ENST00000394189.6	912	3	0	384	0	-377	multi-exon	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACTCCACAGACACCGAC	NA	NA	NA	NA	NA	NA	NA	NA	98407763	98358188	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_98358513_98367752_98367870_98407676
ONT_simulated_read_5957047	chr2	-	527	1	NIC	ENSMUSG00000027175.11	novel	5474	10	NA	NA	30197	-1453	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTCAGATGCTCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	104512304	104511777	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_104511800_104512300
ONT_simulated_read_5958108	chr11	-	946	7	ISM	ENSMUSG00000034187.19	ENSMUST00000103075.11	3766	21	71114	37184	71114	-37184	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAAGATCTGCTCACCT	NA	NA	NA	NA	NA	NA	NA	NA	103773768	103749791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567
ONT_simulated_read_5961120	chr11	-	405	1	ISM	ENSMUSG00000020910.17	ENSMUST00000116363.2	1283	5	14125	0	14125	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTGTTTGTGTACAAA	NA	NA	NA	NA	NA	NA	NA	NA	66929271	66928866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_66928900_66929300
ONT_simulated_read_5963508	chr2	+	1274	10	ISM	ENSMUSG00000027282.18	ENSMUST00000136872.8	2596	13	5671	913	5553	-743	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTCCTAGCCTCGTGTA	NA	NA	NA	NA	NA	NA	NA	NA	90683169	90696241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ONT_simulated_read_5963512	chr7	+	299	1	NIC	ENSMUSG00000030770.16	novel	2222	14	NA	NA	0	-160966	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCACTCCCAAGTCGCCT	NA	NA	NA	NA	NA	NA	NA	NA	112026912	112027211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_+_112026900_112027200
ONT_simulated_read_5963645	chr11	-	484	1	ISM	ENSMUSG00000007646.14	ENSMUST00000067692.13	3944	9	25067	2328	25067	124	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAATTGAACTCAGGTCGT	NA	NA	NA	NA	NA	NA	NA	NA	87270282	87269798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_87269800_87270300
ONT_simulated_read_5964249	chr7	+	1153	1	ISM	ENSMUSG00000058975.8	ENSMUST00000025202.8	7760	2	0	35705	0	-35705	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCGCCATGCCTAAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	46045920	46047073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_46045900_46047100
ONT_simulated_read_5964873	chr13	+	1082	6	ISM	ENSMUSG00000042842.12	ENSMUST00000110293.9	2193	7	0	1385	0	-1380	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAACATGGGGCTTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	33149191	33161665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_33149527_33152482_33152658_33155453_33155607_33156229_33156348_33158879_33159023_33161507
ONT_simulated_read_596542	chr8	-	185	1	Antisense	novelGene_ENSMUSG00000095762.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGACCGGGGCCTCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	123568514	123568329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr8_-_123568300_123568500
ONT_simulated_read_5966668	chr8	+	240	3	ISM	ENSMUSG00000019478.18	ENSMUST00000117702.2	1080	7	21261	4186	21261	-4186	internal_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTATCCTCTGCGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	124554067	124557038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_124554178_124555734_124555798_124556971
ONT_simulated_read_5970344	chr6	-	309	1	ISM	ENSMUSG00000030322.13	ENSMUST00000032469.13	3614	8	3669	8697	3586	-1702	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGAAGAGGAGAAAGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	115826663	115826354	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_115826400_115826700
ONT_simulated_read_5970494	chr1	-	669	7	ISM	ENSMUSG00000026632.18	ENST00000526641.5	745	9	2657	0	2657	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCCCCTGCAAGCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	190792382	190778366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_190778518_190781478_190781560_190785056_190785170_190787052_190787109_190787458_190787569_190791023_190791109_190792309
ONT_simulated_read_5973406	chr17	+	384	2	ISM	ENSMUSG00000023993.8	ENST00000373127.8	874	5	-8	6455	0	-6455	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTCCACCAGGTGAGTT	NA	NA	NA	NA	NA	NA	NA	NA	48666946	48667482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_48667011_48667162
ONT_simulated_read_5976281	chr2	+	703	9	ISM	ENSMUSG00000027523.21	ENST00000657090.1	1554	12	-3	1334	-3	-1093	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCGCCGCAAGTGGATCC	NA	NA	NA	NA	NA	NA	NA	NA	174126145	174187202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_174126302_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175
ONT_simulated_read_5976382	chr4	-	1095	9	ISM	ENSMUSG00000028677.20	ENSMUST00000221654.2	1949	11	3473	568	2799	-113	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCATCCCCTAGACTGACT	NA	NA	NA	NA	NA	NA	NA	NA	117143170	117129236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047
ONT_simulated_read_597713	chrX	-	321	1	ISM	ENSMUSG00000036109.18	ENSMUST00000114875.8	4649	7	84853	3390	25436	-170	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGCTTTCCAGTAATGGT	NA	NA	NA	NA	NA	NA	NA	NA	50209856	50209535	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_50209500_50209900
ONT_simulated_read_5979359	chr1	-	1988	9	ISM	ENSMUSG00000026098.14	ENST00000447232.6	2305	11	14144	0	14144	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGTGGTTCTTAACCCA	NA	NA	NA	NA	NA	NA	NA	NA	53307087	53228461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_53228658_53231258_53231420_53234086_53234218_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986
ONT_simulated_read_5981412	chr2	-	2641	13	ISM	ENSMUSG00000075316.12	ENST00000409435.6	5952	26	3033	43427	3033	-43427	internal_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCAAACCGTACCCTTGC	NA	NA	NA	NA	NA	NA	NA	NA	66395575	66357191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_66357429_66363405_66363763_66364457_66364632_66366441_66366681_66367613_66367744_66370607_66370980_66373378_66373664_66377366_66377574_66379323_66379466_66380683_66380748_66392689_66392903_66393679_66393772_66395446
ONT_simulated_read_5981601	chr7	+	818	9	ISM	ENSMUSG00000030805.15	ENSMUST00000121705.8	1316	10	10	558	10	-558	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTGGGCAAGAGCACGTC	NA	NA	NA	NA	NA	NA	NA	NA	127441149	127447614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559
ONT_simulated_read_5982382	chr2	+	956	1	NIC	ENSMUSG00000008226.15	novel	3309	8	NA	NA	6746	-441	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCACACACAAGTCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	73149743	73150699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_+_73149700_73150700
ONT_simulated_read_5984501	chr19	-	2097	18	ISM	ENSMUSG00000024942.20	ENSMUST00000025891.11	3062	22	3788	395	3050	-394	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTGGAGGCTCTAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	6061448	6038967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6046808_6046821_6047720_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326
ONT_simulated_read_5986269	chr7	-	289	3	ISM	ENSMUSG00000019194.16	ENST00000595652.5	685	5	7371	204	7371	-204	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	182	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTACCCTCCCCCGGCA	NA	NA	NA	NA	NA	NA	NA	NA	30817273	30816487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_30816562_30816648_30816721_30817130
ONT_simulated_read_5989349	chr7	-	147	1	NIC	ENSMUSG00000041571.11	novel	736	6	NA	NA	4862	-186	mono-exon	FALSE	NA	NA	NA	NA	NA	558	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTACCCGTGCACGCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	15651465	15651318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_15651300_15651500
ONT_simulated_read_5991525	chr8	+	1250	1	FSM	ENSMUSG00000046714.8	ENSMUST00000054691.8	2725	1	0	1475	0	-1475	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCGTGGAGACCATCATGA	NA	NA	NA	NA	NA	NA	NA	NA	121842909	121844159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_121842900_121844200
ONT_simulated_read_5992353	chr11	-	436	3	ISM	ENSMUSG00000017561.17	ENSMUST00000103233.10	2230	7	21577	10041	21577	-10041	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCCGGAATGATGCCGAG	NA	NA	NA	NA	NA	NA	NA	NA	79950187	79947359	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_79947411_79948617_79948841_79950025
ONT_simulated_read_5993549	chr10	-	655	7	ISM	ENSMUSG00000001120.16	ENST00000449640.5	1164	13	3052	7758	3052	-7758	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAGACCACAGGACTGG	NA	NA	NA	NA	NA	NA	NA	NA	76633698	76606091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_76606154_76606794_76606871_76617665_76617708_76620904_76621049_76624224_76624354_76625571_76625704_76633628
ONT_simulated_read_5998415	chr1	-	1678	1	ISM	ENSMUSG00000055980.3	ENSMUST00000069799.3	9144	2	53820	2818	53820	-2818	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGCAGTTGCCCAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	82215317	82213639	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_82213600_82215300
ONT_simulated_read_6000001	chr7	-	652	1	ISM	ENSMUSG00000019370.11	ENSMUST00000019514.10	2290	6	7807	277	7602	-277	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCTGCCAGCTTTGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	16650232	16649580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_16649600_16650200
ONT_simulated_read_6000523	chr14	-	327	1	ISM	ENSMUSG00000075486.11	ENSMUST00000100339.9	1090	4	6305	289	6076	41	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAATTTTTTAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	101871817	101871490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_101871500_101871800
ONT_simulated_read_6001584	chr16	-	757	1	ISM	ENSMUSG00000000326.14	ENSMUST00000165430.8	1978	5	5472	380	5472	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACTGGAAGAGGAGATTT	NA	NA	NA	NA	NA	NA	NA	NA	18226772	18226015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_18226000_18226800
ONT_simulated_read_6003712	chr6	+	1091	4	ISM	ENSMUSG00000030225.12	ENSMUST00000087675.9	1729	9	42276	0	42258	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTTGTTTATTTTC	NA	NA	NA	NA	NA	NA	NA	NA	137773831	137814892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_137773881_137807190_137807304_137813731_137813882_137814113
ONT_simulated_read_600415	chr1	+	590	2	ISM	ENSMUSG00000039323.19	ENSMUST00000047328.11	1307	4	0	3261	0	-3254	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	1153	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCGGGAGAAGGTCAATGA	NA	NA	NA	NA	NA	NA	NA	NA	72863661	72888372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_72864124_72888244
ONT_simulated_read_6005350	chr9	-	850	1	NIC	ENSMUSG00000025892.17	novel	5352	17	NA	NA	375047	-1569	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATGTAAAAGTTGTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	4420317	4419467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_4419500_4420300
ONT_simulated_read_600677	chr7	+	309	3	ISM	ENSMUSG00000005649.18	ENSMUST00000117400.2	1258	5	-163	5027	0	-5027	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGTTCATCTCTTACAAG	NA	NA	NA	NA	NA	NA	NA	NA	13132056	13135194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_13132296_13134629_13134661_13135155
ONT_simulated_read_6007384	chr16	-	926	5	ISM	ENSMUSG00000012114.18	ENSMUST00000232236.2	3404	18	42236	12226	42115	-11463	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCCCACCTCCACCATGT	NA	NA	NA	NA	NA	NA	NA	NA	17498575	17481310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17481361_17489408_17489538_17490932_17491263_17492268_17492523_17498412
ONT_simulated_read_600755	chr15	-	1241	10	ISM	ENSMUSG00000022570.8	ENSMUST00000023231.7	1335	11	704	-7	677	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	75800898	75796524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740
ONT_simulated_read_6008718	chr6	-	224	1	ISM	ENSMUSG00000030243.17	ENSMUST00000111803.9	3389	15	24761	727	24710	-727	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTACTTGAGTGCCCAT	NA	NA	NA	NA	NA	NA	NA	NA	142308052	142307828	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_142307800_142308100
ONT_simulated_read_6009268	chr4	-	877	1	ISM	ENSMUSG00000028669.16	ENSMUST00000105851.9	1700	6	10800	128	10800	-128	mono-exon	FALSE	NA	NA	NA	NA	NA	526	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGCTCTTGGTAGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	135703775	135702898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_135702900_135703800
ONT_simulated_read_601120	chr10	-	2065	4	ISM	ENSMUSG00000038151.14	ENST00000369089.3	4472	5	5	2497	5	0	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTTTCAGAAAATAAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	44323041	44315662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_44316239_44316654_44316784_44317054_44318161_44322787
ONT_simulated_read_601212	chr12	+	607	7	ISM	ENSMUSG00000021286.9	ENST00000216602.10	1307	8	20	812	6	-781	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCAGTACACAGTGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	111780674	111794004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111792012_111792067_111793976
ONT_simulated_read_6012506	chr17	+	308	2	ISM	ENSMUSG00000024217.11	ENSMUST00000232873.2	984	7	0	11797	0	-11792	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGGCCCTGGGAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	28057123	28059145	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_28057234_28058947
ONT_simulated_read_6012805	chr9	+	853	6	ISM	ENSMUSG00000034973.17	ENSMUST00000034987.15	8933	37	0	54997	0	-53818	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATCAGGATCTTGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	86367459	86382862	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_86367657_86369306_86369489_86371630_86371802_86374033_86374224_86376448_86376548_86382848
ONT_simulated_read_6012929	chr2	-	4089	1	ISM	ENSMUSG00000005802.13	ENSMUST00000005952.11	5458	7	17318	0	17318	0	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTATTTTCATTGA	NA	NA	NA	NA	NA	NA	NA	NA	122527241	122523152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_122523200_122527200
ONT_simulated_read_601298	chr14	-	1125	1	NIC	ENSMUSG00000041014.18	novel	4011	10	NA	NA	297251	560	mono-exon	FALSE	NA	NA	NA	NA	NA	1738	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAGGGAGGTGTGAACTT	NA	NA	NA	NA	NA	NA	NA	NA	38092998	38091873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_38091900_38093000
ONT_simulated_read_6013115	chr11	-	1315	1	NIC	ENSMUSG00000020335.14	novel	2455	5	NA	NA	7092	-236	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTCTTATTCAGCACCGA	NA	NA	NA	NA	NA	NA	NA	NA	50814668	50813353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_50813400_50814700
ONT_simulated_read_6022651	chr5	+	284	1	ISM	ENSMUSG00000049686.15	ENSMUST00000051016.5	1482	3	0	14799	0	-14799	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGACGGGGAGCCCTCG	NA	NA	NA	NA	NA	NA	NA	NA	123153136	123153420	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_123153100_123153400
ONT_simulated_read_6024975	chr17	-	1300	9	ISM	ENSMUSG00000024127.16	ENST00000378511.7	2249	13	10004	263	10004	-154	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCTTTCGAGGCGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	85386010	85372111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85384036_85384254_85385916
ONT_simulated_read_6025223	chr13	-	542	1	NIC	ENSMUSG00000021760.6	novel	769	2	NA	NA	3093	0	mono-exon	FALSE	NA	NA	NA	NA	NA	834	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAAGTGCATTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	113179834	113179292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_113179300_113179800
ONT_simulated_read_6025880	chr4	-	3200	1	ISM	ENSMUSG00000028557.11	ENSMUST00000030284.10	4061	3	22253	125	22253	-125	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAACTGGAGTTACAGACAG	NA	NA	NA	NA	NA	NA	NA	NA	109311619	109308419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_109308400_109311600
ONT_simulated_read_6025944	chr2	+	830	1	ISM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	1526	1870	1338	260	mono-exon	FALSE	NA	NA	NA	NA	NA	440	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTAGCCTCTGCTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	121281201	121282031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_121281200_121282000
ONT_simulated_read_6026067	chr8	-	532	1	ISM	ENSMUSG00000014846.13	ENSMUST00000014990.13	1127	4	3502	0	638	0	mono-exon	FALSE	NA	NA	NA	NA	NA	656	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGACTGACTCAGTCTACA	NA	NA	NA	NA	NA	NA	NA	NA	106194656	106194124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_106194100_106194700
ONT_simulated_read_6028330	chr8	-	442	1	ISM	ENSMUSG00000038000.11	ENSMUST00000042608.8	3154	11	2782	1442	2782	-1442	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGATACAGAAAAAACTCACT	NA	NA	NA	NA	NA	NA	NA	NA	106424934	106424492	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_106424500_106424900
ONT_simulated_read_6029441	chr2	-	2084	5	ISM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	25256	274	25256	-274	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAACACAAAGGCTAAGTTA	NA	NA	NA	NA	NA	NA	NA	NA	103602193	103595636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041
ONT_simulated_read_6033142	chrX	+	470	1	ISM	ENSMUSG00000025332.15	ENST00000452825.7	5409	24	0	40554	0	-38785	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGGCGGCGCCATGCGTCC	NA	NA	NA	NA	NA	NA	NA	NA	151016015	151016485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_151016000_151016500
ONT_simulated_read_6033616	chr5	+	305	4	ISM	ENSMUSG00000019179.11	ENST00000443006.5	920	8	57	3946	57	-3946	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAAGAAGCACGGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	135807575	135815117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_135807656_135813037_135813122_135814782_135814893_135815086
ONT_simulated_read_603370	chr6	-	804	3	ISM	ENSMUSG00000055239.11	ENSMUST00000204598.3	1743	7	49693	197	49693	-197	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTGTTACATTGTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	72826582	72819748	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_72820114_72825207_72825491_72826426
ONT_simulated_read_6034359	chr5	-	1169	7	ISM	ENSMUSG00000004642.14	ENSMUST00000057551.14	1906	8	521	331	247	-331	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	254	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATACAGAGCTCTGGACAA	NA	NA	NA	NA	NA	NA	NA	NA	33809397	33797729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306
ONT_simulated_read_6035434	chr12	-	1351	13	ISM	ENSMUSG00000021039.10	ENSMUST00000021428.9	2232	14	5	965	5	-965	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGCCCAGTAAAAATCTGG	NA	NA	NA	NA	NA	NA	NA	NA	87519039	87497644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
ONT_simulated_read_6035853	chr18	+	2170	15	ISM	ENSMUSG00000024287.9	ENSMUST00000025137.9	4134	21	5916	1254	5916	-1254	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGATGTGAAAATACCCTA	NA	NA	NA	NA	NA	NA	NA	NA	9963821	9994235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986356_9986552_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320
ONT_simulated_read_6036429	chr4	+	733	5	ISM	ENSMUSG00000029076.15	ENST00000360001.12	1472	7	3271	519	3271	-240	internal_fragment	FALSE	canonical	NA	NA	NA	NA	255	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGTCGCCAGTGTCCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	156083904	156094427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
ONT_simulated_read_6036720	chr11	-	1147	4	ISM	ENSMUSG00000040365.15	ENSMUST00000047145.14	3432	6	8097	654	8097	-654	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCTTCCTCACCTACTT	NA	NA	NA	NA	NA	NA	NA	NA	48700083	48697884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_48698674_48698951_48699080_48699291_48699315_48699876
ONT_simulated_read_6039712	chr7	-	1105	10	ISM	ENSMUSG00000037032.17	ENSMUST00000187057.7	1630	13	1483	88	1483	-88	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGGGATCCCAGACCCCA	NA	NA	NA	NA	NA	NA	NA	NA	105216501	105208112	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105214855_105215257_105215386_105215754_105215905_105216289_105216354_105216460
ONT_simulated_read_604096	chr11	+	546	5	ISM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	133	7401	2	-6772	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	299	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACATGTCTCGACCTGT	NA	NA	NA	NA	NA	NA	NA	NA	22940651	22946379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314
ONT_simulated_read_6041244	chr1	-	567	1	Genic_Genomic	ENSMUSG00000001305.6	novel	NA	NA	NA	NA	27817	3	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTATCTTTTCTATTTTA	NA	NA	NA	NA	NA	NA	NA	NA	186453738	186453171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr1_-_186453200_186453700
ONT_simulated_read_604369	chr15	-	1104	8	ISM	ENSMUSG00000037343.9	ENSMUST00000041733.9	5031	26	22603	23149	22603	-23149	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGCTTCTCCCAAGTTA	NA	NA	NA	NA	NA	NA	NA	NA	54912945	54901675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_54901829_54903758_54903870_54906504_54906646_54909131_54909385_54910813_54910880_54911621_54911732_54912022_54912138_54912790
ONT_simulated_read_6044201	chr5	-	335	2	ISM	ENSMUSG00000067642.12	ENSMUST00000088117.11	3099	14	3281	7084	3281	-4277	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCAGCTGAGCTGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	30407439	30405512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_30405645_30407236
ONT_simulated_read_604441	chr4	+	2021	17	ISM	ENSMUSG00000035683.14	ENSMUST00000045607.12	2955	18	2692	740	-21	-296	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGGAAGACTGTGAGATT	NA	NA	NA	NA	NA	NA	NA	NA	44303567	44363935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
ONT_simulated_read_6044880	chr16	-	238	1	ISM	ENSMUSG00000033177.14	ENSMUST00000114562.3	2587	18	37080	26	29863	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCAATAAAATTAATCATTT	NA	NA	NA	NA	NA	NA	NA	NA	45476941	45476703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_45476700_45476900
ONT_simulated_read_6044974	chr3	+	201	3	ISM	ENSMUSG00000027797.16	ENSMUST00000167204.8	6025	7	138312	8275	-80890	-8275	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAAGTCACCAAGTCCATC	NA	NA	NA	NA	NA	NA	NA	NA	55288258	55370462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_55288302_55358387_55358505_55370421
ONT_simulated_read_6045676	chr9	+	799	6	ISM	ENSMUSG00000032363.16	ENST00000613213.4	4431	19	15030	7683	15030	-7579	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATCCTGCGGGCCCGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	90070706	90074464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_90070846_90071671_90071793_90072900_90073146_90073417_90073554_90073888_90074016_90074433
ONT_simulated_read_6045692	chr19	-	895	1	ISM	ENSMUSG00000036748.17	ENSMUST00000235485.2	1790	9	7808	106	7796	-106	mono-exon	FALSE	NA	NA	NA	NA	NA	325	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTCTTAGAGAGTACCAAT	NA	NA	NA	NA	NA	NA	NA	NA	46319251	46318356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_46318400_46319300
ONT_simulated_read_6046536	chr5	+	1005	5	ISM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	28787	1033	28442	-195	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGTTGTAGGAGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	29969472	29990443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
ONT_simulated_read_604811	chr5	+	1280	14	ISM	ENSMUSG00000029146.15	ENSMUST00000031029.15	2018	15	627	514	627	-514	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGGCAGTCCCAGCACAG	NA	NA	NA	NA	NA	NA	NA	NA	31351197	31355730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31351288_31352139_31352258_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
ONT_simulated_read_6050276	chr14	-	202	2	ISM	ENSMUSG00000021831.10	ENST00000395686.8	2224	14	30651	799	30651	-799	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCACAGGGGAATCTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	45525304	45523458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_45523546_45525189
ONT_simulated_read_6051779	chr3	+	1574	3	ISM	ENSMUSG00000049504.13	ENST00000625998.2	4009	12	13919	1006	13919	-857	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAATGATCCACATAGACT	NA	NA	NA	NA	NA	NA	NA	NA	53385551	53388319	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_53386588_53386980_53387132_53387932
ONT_simulated_read_6053038	chr18	+	1528	12	ISM	ENSMUSG00000024404.8	ENSMUST00000025270.8	3790	13	39	3422	-2	-1551	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTTCTGGCCTGAACA	NA	NA	NA	NA	NA	NA	NA	NA	12261836	12287022	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_12262031_12268908_12269025_12269749_12269896_12269984_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969
ONT_simulated_read_6055262	chr2	-	1998	13	ISM	ENSMUSG00000001767.6	ENSMUST00000001818.5	3428	14	193	2376	193	-2376	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATCCTGGAGAAGTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	145776741	145761774	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_145761909_145762516_145762619_145763691_145763932_145765763_145765845_145766634_145766695_145767427_145767620_145768695_145768867_145770040_145770220_145772453_145772621_145773189_145773349_145774165_145774258_145774732_145774886_145776473
ONT_simulated_read_6056954	chr15	+	996	7	NNC	ENSMUSG00000022477.14	novel	2768	18	NA	NA	187	-9220	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGATCCTGGCTGCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	81756890	81790092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr15_+_81757080_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052
ONT_simulated_read_6058322	chr19	-	2149	13	ISM	ENSMUSG00000024862.17	ENSMUST00000113727.8	2874	16	4448	103	335	-103	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTTCCTCCCACACAGTA	NA	NA	NA	NA	NA	NA	NA	NA	5163878	5157878	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160287_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808
ONT_simulated_read_605946	chr2	-	3394	18	ISM	ENSMUSG00000051747.16	ENST00000360870.10	17073	46	16633	31784	14268	-31784	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTGAGATACGGTCAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	76796258	76776119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_76776347_76776460_76776630_76776735_76776901_76777040_76777325_76778171_76778417_76778530_76778765_76779281_76779488_76780358_76780502_76781658_76781875_76781990_76782052_76782263_76782523_76783113_76783180_76783344_76783633_76784929_76785053_76785138_76785433_76794818_76794957_76795434_76795573_76796120
ONT_simulated_read_6060642	chr5	-	599	1	ISM	ENSMUSG00000039968.10	ENSMUST00000036489.10	5550	8	31688	26508	31688	-23945	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATGCTCAGGTAAGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	21125132	21124533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_21124500_21125100
ONT_simulated_read_6061404	chr4	-	637	5	ISM	ENSMUSG00000096351.3	ENSMUST00000217934.2	2413	10	3281	1803	3281	-1248	internal_fragment	FALSE	canonical	NA	NA	NA	NA	209	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCACCACTACTGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	156336537	156333435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_156333580_156333651_156333731_156333841_156333958_156334794_156334958_156336402
ONT_simulated_read_6061441	chr18	-	182	1	ISM	ENSMUSG00000042211.8	ENST00000513826.1	3483	20	36136	637	36136	-544	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTTTCCTGGCTCTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	62637951	62637769	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_62637800_62638000
ONT_simulated_read_606510	chrX	-	396	1	ISM	ENSMUSG00000090084.8	ENSMUST00000044789.10	2477	10	78607	703	78530	-114	mono-exon	FALSE	NA	NA	NA	NA	NA	222	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAAGCTACAGCCACACT	NA	NA	NA	NA	NA	NA	NA	NA	9905314	9904918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_9904900_9905300
ONT_simulated_read_6067766	chr4	-	2229	1	NIC	ENSMUSG00000012117.14	novel	3219	9	NA	NA	29137	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAGAAGGTTTTGCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	133698567	133696338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_133696300_133698600
ONT_simulated_read_6068593	chrX	-	585	5	ISM	ENSMUSG00000062168.13	ENST00000349874.9	2053	14	51639	2628	51639	-2628	internal_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAGTTCACACCTGGTAA	NA	NA	NA	NA	NA	NA	NA	NA	159424964	159408766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_159408837_159414850_159414958_159416189_159416333_159421154_159421302_159424846
ONT_simulated_read_6069069	chr11	+	631	6	ISM	ENSMUSG00000020473.14	ENSMUST00000109829.2	2541	12	0	2997	0	-2997	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCACAATCACTCGCACATA	NA	NA	NA	NA	NA	NA	NA	NA	5817601	5819091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_5817750_5817819_5817960_5818296_5818382_5818474_5818620_5818730_5818817_5819064
ONT_simulated_read_6069626	chr7	+	2260	1	FSM	ENSMUSG00000070802.6	ENSMUST00000094807.6	4147	1	0	1887	0	-1887	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAGAAGGGATCCGCA	NA	NA	NA	NA	NA	NA	NA	NA	16678606	16680866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_16678600_16680900
ONT_simulated_read_6070473	chr15	-	489	2	ISM	ENSMUSG00000101892.2	ENSMUST00000100655.5	1341	6	5270	3091	5270	-3091	internal_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGACTCAGCAGGAAATTG	NA	NA	NA	NA	NA	NA	NA	NA	57892441	57888745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_57888803_57892009
ONT_simulated_read_6071574	chr17	-	2049	12	ISM	ENSMUSG00000040327.17	ENST00000252050.9	7571	40	21805	7784	21805	-7784	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCACCTTCTGGCTCATTC	NA	NA	NA	NA	NA	NA	NA	NA	46832906	46819402	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_46819539_46820727_46820979_46821776_46821977_46822126_46822257_46822364_46822511_46830670_46830858_46830937_46831167_46831407_46831569_46831698_46831882_46831966_46832083_46832261_46832442_46832776
ONT_simulated_read_6072382	chr17	+	328	4	ISM	ENSMUSG00000002660.9	ENSMUST00000002735.9	983	6	87	3326	87	-3326	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCAGTACATCCTGAACC	NA	NA	NA	NA	NA	NA	NA	NA	57297391	57299862	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_57297514_57297605_57297678_57298293_57298391_57299825
ONT_simulated_read_607335	chr4	-	1044	1	ISM	ENSMUSG00000040795.13	ENSMUST00000046675.12	2639	5	1929	1001	1926	-1001	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATAAAAGTTTTCCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	129510963	129509919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129509900_129511000
ONT_simulated_read_6077295	chr8	+	828	7	ISM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	236	11733	236	-11733	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGACCATCGCCCTCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	70495698	70513264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185
ONT_simulated_read_6078242	chr3	-	1442	1	ISM	ENSMUSG00000106218.2	ENSMUST00000198251.2	1896	2	53423	112	53423	-112	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAAATAAATGTCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	88753885	88752443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_88752400_88753900
ONT_simulated_read_6081670	chr6	+	3354	1	ISM	ENSMUSG00000036371.7	ENSMUST00000042990.7	15474	8	26092	1667	25645	-1667	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGGATATATGACATGCAA	NA	NA	NA	NA	NA	NA	NA	NA	67269699	67273053	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_67269700_67273100
ONT_simulated_read_6082278	chr5	-	2275	16	ISM	ENSMUSG00000029657.16	ENST00000630972.2	3278	18	4323	763	4035	-437	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATTTAGAAGGCAAAAATAA	NA	NA	NA	NA	NA	NA	NA	NA	149555601	149541070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498
ONT_simulated_read_608335	chr15	-	636	1	ISM	ENSMUSG00000018040.10	ENSMUST00000018184.10	4363	7	6884	1849	6884	-1849	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTTTTCAACACAACCC	NA	NA	NA	NA	NA	NA	NA	NA	83000118	82999482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_82999500_83000100
ONT_simulated_read_6083398	chr15	-	903	3	ISM	ENSMUSG00000038736.11	ENSMUST00000038719.8	2600	10	39712	0	39278	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCATTGTTTAGATTGGT	NA	NA	NA	NA	NA	NA	NA	NA	44251991	44239466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_44240083_44243455_44243616_44251864
ONT_simulated_read_6083872	chr5	-	283	2	ISM	ENSMUSG00000015806.13	ENST00000508623.5	564	5	6520	0	4577	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGAGCCCTCTCGAAACA	NA	NA	NA	NA	NA	NA	NA	NA	45600938	45591897	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_45592021_45600778
ONT_simulated_read_6083931	chr5	-	2975	12	ISM	ENSMUSG00000005299.7	ENSMUST00000005431.6	5272	14	13006	1892	12926	-1892	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGTAACAGAAAATTCAAGT	NA	NA	NA	NA	NA	NA	NA	NA	33927155	33898908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_33899957_33900985_33901125_33902359_33902548_33903583_33903719_33904719_33904855_33905504_33905646_33906085_33906218_33909835_33909956_33918066_33918271_33918923_33919062_33919802_33919947_33926704
ONT_simulated_read_6084182	chr11	-	1653	8	ISM	ENSMUSG00000020687.14	ENSMUST00000106962.9	3160	19	29558	103	29558	-103	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACGGAGGAGTCAAATAT	NA	NA	NA	NA	NA	NA	NA	NA	104411660	104395865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489
ONT_simulated_read_6085335	chr11	-	235	1	ISM	ENSMUSG00000051232.14	ENSMUST00000052566.8	1347	6	4392	491	4392	-491	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGGAGTAGAGGAGATTCA	NA	NA	NA	NA	NA	NA	NA	NA	78398606	78398371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_78398400_78398600
ONT_simulated_read_60872	chr6	-	1194	9	NNC	ENSMUSG00000051586.18	novel	2891	20	NA	NA	17424	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGCCCGTGGTTTGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	121001796	120959486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_120959689_120978568_120978657_120979747_120979837_120985955_120986143_120996656_120996741_120998143_120998315_120999186_120999250_120999344_120999458_121001599
ONT_simulated_read_6088536	chr16	+	821	4	ISM	ENSMUSG00000022752.10	ENSMUST00000166897.3	5964	12	0	19980	0	-19980	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTCAAAATGAGCAGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	56942065	56957088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_56942558_56953439_56953614_56955015_56955143_56957060
ONT_simulated_read_6088763	chr1	-	1592	1	ISM	ENSMUSG00000026219.15	ENSMUST00000027421.13	9632	41	114491	2033	113896	1042	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAACAAACAAACAA	NA	NA	NA	NA	NA	NA	NA	NA	84702534	84700942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_84700900_84702500
ONT_simulated_read_6093380	chr5	-	1342	7	ISM	ENSMUSG00000042647.14	ENSMUST00000041252.13	3881	11	11445	1625	11445	-1625	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGGGACACAAAGAATCTGT	NA	NA	NA	NA	NA	NA	NA	NA	121745556	121736462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422
ONT_simulated_read_6094376	chr15	+	1458	12	FSM	ENSMUSG00000056851.15	ENST00000517662.1	996	12	0	-462	0	145	multi-exon	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTACCACTCCAATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	102381768	102407461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
ONT_simulated_read_6094445	chr4	-	280	3	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	8965	10381	8502	-10381	internal_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGATAATGTAGATGGT	NA	NA	NA	NA	NA	NA	NA	NA	116476173	116469186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_116469279_116471526_116471608_116476066
ONT_simulated_read_6098083	chrX	-	1384	5	ISM	ENSMUSG00000025658.17	ENST00000644585.1	5141	21	182382	1750	136083	-1750	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGCAGTTTTCTATCTGA	NA	NA	NA	NA	NA	NA	NA	NA	156643597	156606320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_156606833_156609352_156609550_156636090_156636632_156639555_156639657_156643564
ONT_simulated_read_6098634	chr6	+	994	9	ISM	ENSMUSG00000030284.12	ENSMUST00000032422.6	2306	10	558	1182	558	-1182	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGAATGAGAAGTGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	113460815	113469117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_113461038_113461455_113461539_113465031_113465143_113465439_113465532_113466394_113466572_113466655_113466752_113468613_113468698_113468854_113468951_113469084
ONT_simulated_read_6098872	chr3	+	741	3	ISM	ENSMUSG00000056260.16	ENSMUST00000098750.5	3103	4	10978	940	10978	-270	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGAAGCAGGAAAAAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	106640229	106642950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_106640459_106641673_106641956_106642720
ONT_simulated_read_6102114	chr4	-	495	1	ISM	ENSMUSG00000038422.3	ENSMUST00000037820.3	1205	2	2197	577	2197	-577	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACCCTGAAGGGGTGCC	NA	NA	NA	NA	NA	NA	NA	NA	62418316	62417821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_62417800_62418300
ONT_simulated_read_610244	chr1	-	3418	13	ISM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	3823	0	3823	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCTGTTAGAGCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	181666121	181642899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942
ONT_simulated_read_61031	chr13	-	762	5	ISM	ENSMUSG00000021417.16	ENSMUST00000110251.9	1395	10	6576	-9	6576	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	NA	NA	NA	NA	NA	NA	NA	35171539	35161730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451
ONT_simulated_read_6105283	chr4	-	802	8	ISM	ENSMUSG00000019055.16	ENSMUST00000019199.14	3243	19	13526	6165	13484	-6165	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGTGCCCACTATCGACA	NA	NA	NA	NA	NA	NA	NA	NA	148007698	148000374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_148000401_148001761_148001867_148002590_148002657_148003236_148003351_148004625_148004768_148005463_148005590_148005854_148005960_148007580
ONT_simulated_read_6109098	chr11	-	1628	9	ISM	ENSMUSG00000020883.19	ENST00000394294.7	2333	14	40050	121	40050	-121	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	206	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCGATTGTTACTATGTTG	NA	NA	NA	NA	NA	NA	NA	NA	98000357	97979643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97980525_97981483_97981697_97982970_97983028_97983938_97983984_97985958_97986020_97987754_97987886_97989245_97989321_97990808_97990936_98000319
ONT_simulated_read_6112323	chr19	+	209	1	NIC	ENSMUSG00000038274.14	novel	613	5	NA	NA	0	-1309	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCGTACCGCGACCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	6107998	6108207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_+_6108000_6108200
ONT_simulated_read_6112763	chr9	+	396	1	ISM	ENSMUSG00000039285.13	ENSMUST00000044454.12	3396	8	0	22945	0	-19590	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAACACTGGGGAAGCGA	NA	NA	NA	NA	NA	NA	NA	NA	117869566	117869962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_117869600_117870000
ONT_simulated_read_6113460	chr9	-	1181	3	ISM	ENSMUSG00000031934.15	ENSMUST00000164273.9	5732	5	35233	3778	35233	-3778	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCCACAGAGGAGCAGCAT	NA	NA	NA	NA	NA	NA	NA	NA	14921541	14917201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_14917514_14918656_14919316_14921331
ONT_simulated_read_6114081	chr4	+	527	6	ISM	ENSMUSG00000028863.14	ENST00000373075.6	1221	8	4736	450	4721	-432	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCTATAAGACTTTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	124983690	125003250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_124983756_124983894_124983941_124996631_124996825_125001309_125001340_125002115_125002150_125003091
ONT_simulated_read_6117759	chr3	+	1954	1	FSM	ENSMUSG00000093577.2	ENSMUST00000176760.2	2427	1	475	-2	475	2	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGACTCTTCTATTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	96147183	96149137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_96147200_96149100
ONT_simulated_read_6121563	chr7	+	494	4	ISM	ENSMUSG00000030802.15	ENSMUST00000071056.14	3405	12	3158	1918	2478	-305	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCTAATGGTGGATTTTG	NA	NA	NA	NA	NA	NA	NA	NA	127506411	127507475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_127506520_127506613_127506704_127507092_127507252_127507338
ONT_simulated_read_6121830	chr9	-	292	2	ISM	ENSMUSG00000039048.16	ENSMUST00000127996.8	2289	11	5661	714	5586	-714	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTACCCGCTTTTACTTA	NA	NA	NA	NA	NA	NA	NA	NA	35116690	35116217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_35116420_35116600
ONT_simulated_read_6124882	chr7	-	473	5	ISM	ENSMUSG00000031090.15	ENSMUST00000033415.15	2641	21	7175	15584	7175	-15584	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAGCTGAGCATGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	143369403	143364904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143365038_143366226_143366345_143366499_143366589_143367126_143367179_143369322
ONT_simulated_read_6126220	chr6	-	626	1	ISM	ENSMUSG00000038429.11	ENSMUST00000047510.10	3213	20	13840	0	13791	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTCAGTTCTTTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	124792607	124791981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124792000_124792600
ONT_simulated_read_6127436	chr9	-	2925	5	ISM	ENSMUSG00000040722.8	ENSMUST00000046587.8	3225	7	16584	109	16584	-109	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTTTCTGAGAGACACAA	NA	NA	NA	NA	NA	NA	NA	NA	57358757	57348718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638
ONT_simulated_read_6128648	chr1	-	1003	1	ISM	ENSMUSG00000006010.15	ENSMUST00000111913.9	3273	14	30240	533	29879	-525	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGGGACAAGGTCTAGG	NA	NA	NA	NA	NA	NA	NA	NA	150238591	150237588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_150237600_150238600
ONT_simulated_read_6129577	chr2	-	929	1	FSM	ENSMUSG00000075273.5	ENSMUST00000099996.5	2737	1	0	1808	0	-1808	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTTCAACCTCAAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	75768929	75768000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_75768000_75768900
ONT_simulated_read_6130801	chr7	+	291	3	ISM	ENSMUSG00000031015.9	ENSMUST00000033325.9	4027	12	57624	2126	57624	-2126	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGAGCTTCATACCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	109878541	109880587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_109878586_109879773_109879871_109880437
ONT_simulated_read_6131582	chr5	-	687	2	ISM	ENSMUSG00000039753.17	ENSMUST00000196483.5	2814	11	31122	199	31115	-191	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTCAAACACACTTAGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	43908329	43902156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_43902718_43908203
ONT_simulated_read_6131596	chr4	-	1015	8	ISM	ENSMUSG00000028484.17	ENSMUST00000107215.9	1898	11	10038	410	10033	-410	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATGGCATTATTAACTG	NA	NA	NA	NA	NA	NA	NA	NA	83394657	83380517	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_83380711_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518
ONT_simulated_read_6133232	chr10	-	100	2	ISM	ENSMUSG00000019809.17	ENSMUST00000019945.15	2129	12	275	22305	-26	-22279	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGAATACATTGCCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	13428608	13422164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_13422226_13428569
ONT_simulated_read_613476	chr5	-	1127	1	NIC	ENSMUSG00000004530.13	novel	3491	11	NA	NA	64289	-907	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTCTGTTTCCCTCGCT	NA	NA	NA	NA	NA	NA	NA	NA	113982530	113981403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_113981400_113982500
ONT_simulated_read_6138469	chr17	+	589	4	ISM	ENSMUSG00000024308.16	ENSMUST00000234247.2	2589	8	0	3822	0	-882	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGACCTGCGCTTCGCC	NA	NA	NA	NA	NA	NA	NA	NA	34138610	34144443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34138699_34138844_34139025_34139222_34139484_34144383
ONT_simulated_read_6139880	chr6	-	1516	3	ISM	ENSMUSG00000045962.17	ENSMUST00000088644.13	11330	28	69100	38653	-5822	-316	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATTCCTCTCAAATTACT	NA	NA	NA	NA	NA	NA	NA	NA	119946516	119939584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_119940594_119945436_119945625_119946197
ONT_simulated_read_6143768	chr19	+	206	2	ISM	ENSMUSG00000034820.5	ENST00000626926.1	306	3	5820	0	5820	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	167	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACGTACTGGTGCCGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	10509190	10509527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_10509364_10509494
ONT_simulated_read_6145101	chr15	-	247	4	ISM	ENSMUSG00000022621.17	ENST00000376439.3	405	5	2168	45	2168	-45	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	739	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTCCCAGGACTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	89472420	89467846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_89467886_89468112_89468211_89471116_89471197_89472390
ONT_simulated_read_6146735	chr14	-	179	1	ISM	ENSMUSG00000022015.9	ENST00000398795.7	2072	4	28915	1356	28915	-1356	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCAGCATCAAAATCCC	NA	NA	NA	NA	NA	NA	NA	NA	78516419	78516240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_78516200_78516400
ONT_simulated_read_6147469	chr17	-	1636	1	NIC	ENSMUSG00000002289.17	novel	3308	7	NA	NA	6261	-184	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAGAGAGAAAAGCAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	33994543	33992907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_33992900_33994500
ONT_simulated_read_6147864	chr1	-	463	1	ISM	ENSMUSG00000026637.15	ENSMUST00000195815.3	2214	11	46945	293	46945	-293	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACCTACATTAAAGACGACA	NA	NA	NA	NA	NA	NA	NA	NA	191729923	191729460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_191729500_191729900
ONT_simulated_read_6149284	chr9	+	1743	7	ISM	ENSMUSG00000032216.16	ENST00000338963.6	4959	22	46317	-120	46033	120	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGCCCCGTCTTCATCC	NA	NA	NA	NA	NA	NA	NA	NA	72646753	72655694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
ONT_simulated_read_6152467	chr16	+	803	1	ISM	ENSMUSG00000022752.10	ENSMUST00000166897.3	5964	12	31557	2643	31557	-2643	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGTCTTTTTAGAAAATA	NA	NA	NA	NA	NA	NA	NA	NA	56973622	56974425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_56973600_56974400
ONT_simulated_read_6153746	chr17	+	960	3	ISM	ENSMUSG00000023963.11	ENSMUST00000233437.2	2227	11	64418	151	64257	-151	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTCTTTGTGGTATCCC	NA	NA	NA	NA	NA	NA	NA	NA	44042833	44061595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_44042905_44057415_44057504_44060794
ONT_simulated_read_6163989	chr10	-	652	1	ISM	ENSMUSG00000001435.16	ENSMUST00000081654.13	5063	42	113154	565	60311	273	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCATATAGGCGGGCACC	NA	NA	NA	NA	NA	NA	NA	NA	76889228	76888576	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_76888600_76889200
ONT_simulated_read_6164514	chr17	-	1477	8	ISM	ENSMUSG00000013236.18	ENSMUST00000086828.10	5608	29	55	23386	55	-23384	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGATCCGTGGCTACCGT	NA	NA	NA	NA	NA	NA	NA	NA	56769161	56742816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56743192_56744785_56745056_56754359_56754471_56758651_56758841_56761186_56761329_56761873_56762020_56765191_56765378_56769103
ONT_simulated_read_6168225	chrX	-	623	7	FSM	ENSMUSG00000031171.12	ENST00000396894.8	655	7	33	-1	33	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAAATTTGCTTTTTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	8115265	8111299	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_8111341_8111522_8111712_8111790_8111895_8112574_8112659_8112770_8112874_8112965_8113020_8115217
ONT_simulated_read_6169288	chr17	-	430	2	ISM	ENSMUSG00000024150.13	ENSMUST00000129616.8	813	5	8574	0	752	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCCACATGACTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	87564734	87563215	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_87563486_87564574
ONT_simulated_read_617052	chr10	+	1038	7	ISM	ENSMUSG00000034560.7	ENST00000620430.5	3555	33	41780	-248	41780	248	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCAGATCCCTAACCCATC	NA	NA	NA	NA	NA	NA	NA	NA	83421656	83430351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552_83427653_83430034
ONT_simulated_read_6172728	chr7	-	302	2	ISM	ENSMUSG00000060860.9	ENSMUST00000079496.9	1238	4	2008	330	2008	-330	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCGGGAGGGCTGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	4813581	4811342	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_4811484_4813420
ONT_simulated_read_6172939	chr9	-	964	1	ISM	ENSMUSG00000025235.9	ENSMUST00000026265.8	2518	16	30555	0	30555	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGATCACTGTCTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	59230236	59229272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_59229300_59230200
ONT_simulated_read_6173110	chr11	-	929	7	ISM	ENSMUSG00000017210.15	ENST00000356271.7	2960	24	19182	344	19182	-319	internal_fragment	FALSE	canonical	NA	NA	NA	NA	253	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCACACCCAGTTTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	98600568	98596044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407
ONT_simulated_read_6173430	chr14	+	171	1	ISM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	52	3065	0	-1037	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGGCTGCAATTGCATGA	NA	NA	NA	NA	NA	NA	NA	NA	76741969	76742140	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_76742000_76742100
ONT_simulated_read_6174755	chr18	-	742	1	ISM	ENSMUSG00000057766.15	ENSMUST00000118525.9	3328	10	51124	1570	50965	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAACTTTTTCCTGACTT	NA	NA	NA	NA	NA	NA	NA	NA	12387730	12386988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_12387000_12387700
ONT_simulated_read_6175950	chr2	-	1815	7	ISM	ENSMUSG00000027201.17	ENSMUST00000142718.8	2942	16	23203	64	23203	-63	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAAAGTCTTAACATTT	NA	NA	NA	NA	NA	NA	NA	NA	124942340	124929724	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_124930958_124937627_124937680_124937831_124938041_124939896_124939996_124940369_124940439_124940716_124940768_124942238
ONT_simulated_read_6177235	chr2	-	1451	11	ISM	ENSMUSG00000074796.11	ENST00000642402.1	2810	17	533	1704	533	-1690	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGACTGTGCCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	130533678	130527744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468
ONT_simulated_read_6182532	chr5	-	1676	1	ISM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	36041	777	36041	-775	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAATGCTCCCGTTGATGC	NA	NA	NA	NA	NA	NA	NA	NA	21870351	21868675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_21868700_21870400
ONT_simulated_read_6187263	chr3	-	699	7	ISM	ENSMUSG00000055436.19	ENST00000370951.5	2138	12	67	6524	67	-6524	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATCCTCCAGACACAGGT	NA	NA	NA	NA	NA	NA	NA	NA	157737208	157723464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
ONT_simulated_read_6188397	chr15	-	1461	1	FSM	ENSMUSG00000075609.4	ENSMUST00000100555.4	1278	1	0	-183	0	183	mono-exon	FALSE	NA	NA	NA	NA	NA	429	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTACACGTGTATAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	73953360	73951899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_73951900_73953400
ONT_simulated_read_6188585	chr1	-	181	2	ISM	ENSMUSG00000039239.15	ENSMUST00000195201.2	3485	8	76664	1362	76664	-1362	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGAAGCTTCCGCTTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	186361233	186357776	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_186357804_186361079
ONT_simulated_read_6191355	chr16	-	503	1	ISM	ENSMUSG00000061751.17	ENSMUST00000114963.8	3207	16	149631	14	82312	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGTTTTAATGAGGTCA	NA	NA	NA	NA	NA	NA	NA	NA	33834018	33833515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_33833500_33834000
ONT_simulated_read_6191458	chr13	-	879	1	ISM	ENSMUSG00000021460.18	ENSMUST00000110031.4	3235	4	16642	1951	16502	-1951	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGATACTGGCCTGGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	53067075	53066196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_53066200_53067100
ONT_simulated_read_6192412	chr14	-	353	1	ISM	ENSMUSG00000040380.15	ENSMUST00000063871.13	4866	3	1226	3901	1066	1	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGAACCTCTAGACAAAACG	NA	NA	NA	NA	NA	NA	NA	NA	56120623	56120270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_56120300_56120600
ONT_simulated_read_6192507	chr17	-	1420	9	ISM	ENSMUSG00000024187.16	ENSMUST00000118487.8	2629	12	25852	627	25852	-627	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCTTCCAGCCTCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	26437263	26432313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097
ONT_simulated_read_6193401	chr16	-	1366	1	ISM	ENSMUSG00000009097.11	ENSMUST00000232335.2	2511	7	4539	86	4539	-86	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCCCAGCAGGAAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	18401180	18399814	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_18399800_18401200
ONT_simulated_read_61976	chr8	-	1493	6	ISM	ENSMUSG00000015023.8	ENSMUST00000040416.8	2547	12	17166	455	17166	-455	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCATTCACCCCCACTCAA	NA	NA	NA	NA	NA	NA	NA	NA	111707266	111702082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_111702723_111703060_111703253_111703599_111703763_111705099_111705338_111705667_111705846_111707184
ONT_simulated_read_6198106	chr9	-	986	1	ISM	ENSMUSG00000032131.17	ENST00000619701.5	3572	15	13385	670	12701	-670	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCAGTTCCACAGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	44186140	44185154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44185200_44186100
ONT_simulated_read_6198855	chr7	+	1069	7	ISM	ENSMUSG00000030815.12	ENSMUST00000121004.3	1840	9	4446	157	4446	-157	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGCTTGTCACAGAAACC	NA	NA	NA	NA	NA	NA	NA	NA	127177146	127182320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ONT_simulated_read_619896	chr9	-	837	6	ISM	ENSMUSG00000032590.15	ENSMUST00000193254.6	2518	22	7502	0	7502	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTCTGTGCTGGTACTT	NA	NA	NA	NA	NA	NA	NA	NA	107964303	107962611	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221
ONT_simulated_read_6202240	chr3	+	1389	9	FSM	ENSMUSG00000027940.19	ENST00000328159.9	1525	9	67	69	0	-69	multi-exon	FALSE	canonical	NA	NA	NA	NA	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTCTTTGAACAATTTT	NA	NA	NA	NA	NA	NA	NA	NA	89987021	90007463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_89998319_89998399_90006834
ONT_simulated_read_620782	chr2	-	2529	15	ISM	ENSMUSG00000027634.15	ENSMUST00000072298.13	2586	16	21917	0	3	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	156812059	156769264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956
ONT_simulated_read_6208181	chr2	-	1353	10	ISM	ENSMUSG00000060131.12	ENST00000284509.11	3603	26	87841	35359	87841	-35359	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACAGGATGTGCAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	126234766	126200037	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_126200160_126200687_126200872_126203675_126203824_126214084_126214191_126216403_126216516_126217585_126217751_126220632_126220749_126225580_126225770_126231160_126231327_126234721
ONT_simulated_read_6209772	chr12	-	233	1	ISM	ENSMUSG00000021176.7	ENSMUST00000046485.5	2068	6	164369	1309	164369	-165	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGGCTGCTACTGCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	99685332	99685099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_99685100_99685300
ONT_simulated_read_6210355	chr19	+	180	1	ISM	ENSMUSG00000024726.11	ENSMUST00000025632.11	4518	8	115	36142	115	-36142	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGGACGTGGAGGTGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	18648242	18648422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_18648200_18648400
ONT_simulated_read_6214914	chrX	-	434	5	ISM	ENSMUSG00000031255.15	ENSMUST00000113294.8	2958	13	29445	3858	9868	-2723	internal_fragment	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCAGAGGCAGCATGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	132853116	132851054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_132851117_132851859_132851964_132852075_132852167_132852497_132852574_132853015
ONT_simulated_read_6215070	chr7	-	981	7	NNC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	1057	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATGTGTGCTGTGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	44776993	44774981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776512_44776632_44776699_44776919
ONT_simulated_read_6215100	chr14	-	1931	15	ISM	ENSMUSG00000014496.9	ENSMUST00000227089.2	3522	28	54139	90	52617	-90	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACACAGATTCAACCTGA	NA	NA	NA	NA	NA	NA	NA	NA	31449733	31423892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_31424264_31427221_31427314_31428746_31428830_31429160_31429244_31429959_31430106_31430706_31430791_31430874_31430963_31432708_31432929_31433015_31433134_31433885_31433974_31437190_31437393_31441297_31441373_31442062_31442090_31443802_31443915_31449591
ONT_simulated_read_6216387	chr11	-	1271	1	ISM	ENSMUSG00000078922.10	ENSMUST00000068063.4	2823	2	4364	1297	4364	-1297	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGCATGAGTTCCAATCA	NA	NA	NA	NA	NA	NA	NA	NA	48878721	48877450	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_48877400_48878700
ONT_simulated_read_6216457	chr4	-	214	2	ISM	ENSMUSG00000029007.9	ENST00000510878.1	269	3	3978	0	3978	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCCGCCCCGGTAAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	148168445	148166031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_148166216_148168415
ONT_simulated_read_6217283	chr2	-	814	6	ISM	ENSMUSG00000025781.15	ENSMUST00000026887.14	1060	9	16115	0	16115	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	1311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATTGTAACTTTCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	10069123	10060826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_10060973_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917
ONT_simulated_read_6218021	chr3	+	1220	7	ISM	ENSMUSG00000034098.15	ENSMUST00000038364.15	5107	16	289	227734	-8	-225892	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTGCTGTTCTGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	75981865	76389592	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_75982282_76052255_76052398_76131147_76131182_76229360_76229610_76317744_76317942_76337048_76337170_76389531
ONT_simulated_read_621960	chr5	-	847	1	NIC	ENSMUSG00000029161.8	novel	1442	6	NA	NA	11552	0	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTCCTTGGTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	31091333	31090486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_31090500_31091300
ONT_simulated_read_622070	chr2	-	1398	14	FSM	ENSMUSG00000026761.13	ENST00000264169.6	1458	14	56	4	56	-4	multi-exon	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGATTTTAAGTACATTT	NA	NA	NA	NA	NA	NA	NA	NA	48840051	48795425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839969
ONT_simulated_read_622074	chr1	-	198	1	NIC	ENSMUSG00000098234.8	novel	473	4	NA	NA	1067	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCGGACTTTTTGTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	10012381	10012183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_10012200_10012400
ONT_simulated_read_6224939	chr14	+	566	1	NIC	ENSMUSG00000058571.12	novel	3488	10	NA	NA	0	-1048990	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGCGTGGGCCCCGGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	117162942	117163508	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_+_117162900_117163500
ONT_simulated_read_6227675	chr3	-	1646	4	ISM	ENSMUSG00000036513.16	ENSMUST00000160959.8	2992	5	238	1195	238	-1195	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	125	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGTTAGCAGTGCATGT	NA	NA	NA	NA	NA	NA	NA	NA	57558898	57552964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_57554298_57557462_57557637_57558111_57558195_57558842
ONT_simulated_read_6229789	chr15	+	1310	8	ISM	ENSMUSG00000008690.16	ENSMUST00000088717.7	3302	20	14297	800	14297	-800	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTAGCTTCCGCACCACCT	NA	NA	NA	NA	NA	NA	NA	NA	89254235	89256229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_89254282_89254440_89254512_89254597_89254692_89254803_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ONT_simulated_read_623139	chr4	-	690	6	ISM	ENSMUSG00000025413.14	ENSMUST00000026480.13	2121	10	7204	873	7126	-65	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGACCCTGGGGTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	106528937	106520325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_106520429_106522852_106522936_106524692_106524775_106525233_106525452_106527645_106527733_106528820
ONT_simulated_read_6231498	chr12	-	968	8	ISM	ENSMUSG00000056770.16	ENSMUST00000071095.14	2755	13	21303	1201	21205	-1201	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGCCATCAAATTGCGCT	NA	NA	NA	NA	NA	NA	NA	NA	108124270	108073890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012
ONT_simulated_read_6231974	chr11	-	435	3	ISM	ENSMUSG00000020831.19	ENSMUST00000100950.10	545	4	774	-112	774	-42	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACATTTTTATACAGAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	70127730	70126075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_70126295_70126849_70127038_70127702
ONT_simulated_read_6232256	chr8	-	1405	1	ISM	ENSMUSG00000035770.9	ENSMUST00000041769.8	4627	13	22386	1577	22143	1084	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAAAATCTTTGTTATCC	NA	NA	NA	NA	NA	NA	NA	NA	105147293	105145888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_105145900_105147300
ONT_simulated_read_6233734	chr11	+	171	2	ISM	ENSMUSG00000020515.14	ENSMUST00000108843.8	2099	7	0	8988	0	-8988	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACATAGTTGGCTCACG	NA	NA	NA	NA	NA	NA	NA	NA	57995054	58000432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_57995175_58000381
ONT_simulated_read_6236419	chr1	-	1373	7	ISM	ENSMUSG00000026098.14	ENST00000639501.1	1925	8	4	9807	4	-9807	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATCGAACCTGTGAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	53321227	53246043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_53246572_53246734_53246879_53247121_53247245_53295787_53295952_53306986_53307090_53314228_53314412_53321099
ONT_simulated_read_6237119	chr10	+	679	5	ISM	ENSMUSG00000019794.14	ENSMUST00000019929.13	1774	11	8	14325	8	-14325	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTGGGTATGACAAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	7601771	7624588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7624539
ONT_simulated_read_6239945	chr11	-	1683	14	ISM	ENSMUSG00000018425.19	ENST00000425628.7	2250	17	7962	192	1438	-192	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGCAAAGAAGAAATGATGA	NA	NA	NA	NA	NA	NA	NA	NA	86690473	86661058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86679992_86680176_86680311_86680399_86683987_86684088_86688448_86688581_86689747_86689815_86690245
ONT_simulated_read_6242733	chr5	-	485	3	ISM	ENSMUSG00000053553.12	ENSMUST00000066052.12	1429	5	96338	781	96338	-781	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTCCCAGAGCTGTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	139349919	139346274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_139346486_139347061_139347144_139349727
ONT_simulated_read_6242955	chr1	-	386	1	NIC	ENSMUSG00000006542.14	novel	2832	14	NA	NA	8516	529	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGAACAGCCCTTGATC	NA	NA	NA	NA	NA	NA	NA	NA	74779220	74778834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_74778800_74779200
ONT_simulated_read_6243079	chr3	-	276	3	ISM	ENSMUSG00000078784.9	ENSMUST00000108365.4	559	4	1582	60	1582	-56	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATACAGAGATAGTGCATC	NA	NA	NA	NA	NA	NA	NA	NA	14674699	14671408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_14671469_14672236_14672354_14674600
ONT_simulated_read_6243322	chr6	+	892	6	NNC	ENSMUSG00000036371.7	novel	1617	8	NA	NA	27	-6172	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGAGCAAAAGTAGAATTTAA	NA	NA	NA	NA	NA	NA	NA	NA	67244021	67254826	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_+_67244394_67248181_67248314_67248870_67249012_67249122_67249213_67249847_67249923_67254744
ONT_simulated_read_6243428	chr11	-	810	5	FSM	ENSMUSG00000018168.9	ENST00000351680.7	1331	5	0	521	0	-521	multi-exon	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCATCAGCAGTGTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	98407763	98358332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_98358513_98367752_98367870_98379677_98379846_98381157_98381416_98407676
ONT_simulated_read_6247390	chr17	-	2317	10	ISM	ENSMUSG00000014773.14	ENSMUST00000014917.8	3581	11	1016	475	1016	-475	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGTTGTTCCCATTGCA	NA	NA	NA	NA	NA	NA	NA	NA	15595222	15588090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_15588298_15588395_15588514_15588628_15589428_15590468_15590686_15590792_15590963_15591084_15591216_15591867_15591929_15593698_15593957_15594151_15594213_15594927
ONT_simulated_read_6250066	chr11	-	3215	12	ISM	ENSMUSG00000020435.18	ENSMUST00000070552.14	4097	14	137330	0	-4357	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTTGCAGAGTCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	3676573	3653730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_3655208_3655388_3655616_3661693_3661870_3661957_3662054_3662125_3662230_3662458_3662580_3664470_3664717_3665087_3665235_3665496_3665552_3667096_3667215_3667793_3667987_3676318
ONT_simulated_read_625020	chr17	-	2056	13	ISM	ENSMUSG00000040327.17	ENST00000252050.9	7571	40	13628	20747	13628	-20747	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCCTGCAGCTTCCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	46841083	46832365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_46832442_46832776_46832911_46833045_46833222_46833440_46833537_46834181_46834288_46835991_46836164_46836281_46836373_46836633_46836862_46837304_46837411_46837487_46837735_46838824_46839043_46839385_46839583_46840874
ONT_simulated_read_6251080	chr7	-	1048	1	ISM	ENSMUSG00000048921.12	ENSMUST00000053392.11	3621	3	4810	1165	4645	454	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAGAGAGAGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	127043520	127042472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_127042500_127043500
ONT_simulated_read_6251612	chr12	-	384	1	ISM	ENSMUSG00000049106.8	ENSMUST00000054145.8	5706	9	96336	4034	95721	-3200	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAATGCAGTGGCGTCAA	NA	NA	NA	NA	NA	NA	NA	NA	80387039	80386655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_80386700_80387000
ONT_simulated_read_6253181	chr3	-	1402	12	ISM	ENSMUSG00000015747.6	ENSMUST00000015891.6	2637	15	1351	31173	818	-11396	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGGTAACAAAGATTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	95964427	95938316	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95938440_95940090_95940199_95940976_95941136_95948649_95948818_95949620_95949735_95950105_95950241_95953663_95953775_95954309_95954448_95954558_95954628_95955619_95955700_95960350_95960412_95964291
ONT_simulated_read_6254630	chr5	-	613	4	ISM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	16709	158	8433	-158	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	149	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGCTATTTTTTTCTACT	NA	NA	NA	NA	NA	NA	NA	NA	129847804	129842779	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669
ONT_simulated_read_6254760	chr15	-	1025	3	ISM	ENSMUSG00000042292.19	ENSMUST00000109579.9	4154	13	89201	672	89201	-672	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAGGAAGAAACTAGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	80900083	80897163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_80898004_80899549_80899611_80899959
ONT_simulated_read_6258831	chr2	+	264	1	NIC	ENSMUSG00000039205.17	novel	2771	17	NA	NA	0	-14836	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTGCACGGGAAGCACCA	NA	NA	NA	NA	NA	NA	NA	NA	32253209	32253473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_+_32253200_32253500
ONT_simulated_read_6260928	chr2	-	632	3	ISM	ENSMUSG00000026737.13	ENSMUST00000006912.12	3477	10	150472	1899	150472	-1899	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACACTCTCGCGCACATTT	NA	NA	NA	NA	NA	NA	NA	NA	18852465	18848964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_18849272_18850685_18850790_18852244
ONT_simulated_read_6261373	chrX	-	1401	2	ISM	ENSMUSG00000087396.8	ENSMUST00000130744.8	3369	9	33517	816	33517	-816	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCGACTAGAATGTGTATC	NA	NA	NA	NA	NA	NA	NA	NA	74774788	74769886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_74771125_74774625
ONT_simulated_read_626483	chr8	-	475	4	ISM	ENSMUSG00000037300.20	ENST00000366661.9	2911	23	47542	227	47522	-227	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTGAATACTTGAAAACA	NA	NA	NA	NA	NA	NA	NA	NA	125401181	125398701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100
ONT_simulated_read_6265235	chr11	-	694	1	NIC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	11553	-214	mono-exon	FALSE	NA	NA	NA	NA	NA	8443	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGCTCAGGCCAGGTC	NA	NA	NA	NA	NA	NA	NA	NA	120452087	120451393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_120451400_120452100
ONT_simulated_read_6268777	chr7	-	255	1	FSM	ENSMUSG00000083854.4	ENSMUST00000120890.2	351	1	0	96	0	-96	mono-exon	FALSE	NA	NA	NA	NA	NA	357	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCTATTAAATCACCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	103532211	103531956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_103532000_103532200
ONT_simulated_read_627269	chr4	-	931	6	ISM	ENSMUSG00000029026.18	ENST00000378280.5	1861	11	32712	0	32712	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTACCTTCTTCTCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	154148912	154143445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_154143784_154145044_154145139_154145818_154145958_154146968_154147097_154148341_154148431_154148769
ONT_simulated_read_6273422	chr12	+	2115	18	ISM	ENSMUSG00000021198.17	ENSMUST00000085079.11	7762	47	126300	385	126300	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACTCCTCGGCTCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	103094447	103149872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_103094572_103097814_103097918_103100663_103100805_103101928_103101968_103108030_103108144_103108237_103108324_103108845_103109020_103112560_103112630_103115229_103115341_103122714_103122820_103128071_103128150_103131888_103131979_103134533_103134710_103135825_103136013_103137830_103138029_103139711_103139790_103148421_103148464_103149671
ONT_simulated_read_6273739	chr17	+	440	3	ISM	ENSMUSG00000024082.6	ENSMUST00000024887.6	1749	10	7759	549	7758	-549	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGATGGGAGAAAGATTT	NA	NA	NA	NA	NA	NA	NA	NA	79252323	79254379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_79252514_79253724_79253899_79254303
ONT_simulated_read_6276108	chr7	-	836	4	ISM	ENSMUSG00000030869.12	ENSMUST00000123296.8	1416	5	5134	369	5134	-369	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	436	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGCAGCTAGAGACAGGA	NA	NA	NA	NA	NA	NA	NA	NA	121695940	121689647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_121690187_121690808_121690909_121692839_121692928_121695831
ONT_simulated_read_6276376	chr6	-	356	2	ISM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	4482	1337	-36	157	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGACTGTAAGTTGGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	72412059	72411118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_72411379_72411963
ONT_simulated_read_6278519	chr5	-	200	1	ISM	ENSMUSG00000015652.10	ENSMUST00000015796.9	1230	5	12668	142	12668	-142	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTCAGCAAAATTAACAGGA	NA	NA	NA	NA	NA	NA	NA	NA	5786658	5786458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_5786500_5786700
ONT_simulated_read_6278774	chr16	-	800	2	ISM	ENSMUSG00000065979.13	ENSMUST00000121750.2	2614	4	80835	1470	80835	-1470	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTGCCTTTCCTTGATAA	NA	NA	NA	NA	NA	NA	NA	NA	11646451	11623060	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_11623448_11646038
ONT_simulated_read_6280214	chrX	-	1046	1	ISM	ENSMUSG00000050379.16	ENSMUST00000060474.14	3457	10	76438	847	76438	73	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCCCAAGTGGATAAATTG	NA	NA	NA	NA	NA	NA	NA	NA	36176871	36175825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_36175800_36176900
ONT_simulated_read_6282575	chr12	-	987	1	FSM	ENSMUSG00000113662.2	ENSMUST00000222675.2	2219	1	465	767	465	-767	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATCTTTAAAAATATAATAA	NA	NA	NA	NA	NA	NA	NA	NA	110567932	110566945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_110566900_110567900
ONT_simulated_read_6283538	chr15	+	496	4	ISM	ENSMUSG00000022255.17	ENST00000519934.5	2171	11	31012	23221	31012	-23221	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAGAACTTTTAGAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	34114232	34118256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_34114255_34114944_34115122_34116456_34116523_34118025
ONT_simulated_read_6283930	chr7	+	356	3	FSM	ENSMUSG00000030714.15	ENST00000649930.1	392	3	38	-2	38	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGGCTGGTAGGCTTGAAT	NA	NA	NA	NA	NA	NA	NA	NA	126270748	126271859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_126270840_126270905_126271053_126271741
ONT_simulated_read_628617	chr7	-	818	2	ISM	ENSMUSG00000033917.16	ENSMUST00000038791.15	1582	6	13984	0	13984	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	376	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTACTGATCTTCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	118291017	118287767	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_118288374_118290805
ONT_simulated_read_6286299	chr2	-	2928	10	ISM	ENSMUSG00000026933.18	ENST00000409386.3	5566	18	17173	9392	17173	-8671	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTCTCGGAGCAAAACCC	NA	NA	NA	NA	NA	NA	NA	NA	25855837	25828408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25830326_25830876_25830962_25831389_25831482_25834437_25834616_25834953_25835051_25835145_25835286_25842689_25842832_25845271_25845305_25846258_25846340_25855674
ONT_simulated_read_6287146	chr18	-	1011	1	ISM	ENSMUSG00000024505.17	ENSMUST00000163590.9	3145	6	57133	1313	57099	121	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTACTTACTTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	49831535	49830524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_49830500_49831500
ONT_simulated_read_6287342	chr11	-	624	6	ISM	ENSMUSG00000038208.14	ENSMUST00000090827.12	2419	8	1507	1705	1452	-461	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAATTGCTTGACTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	98289809	98281207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_98281318_98281502_98281640_98281905_98281968_98282520_98282584_98288721_98288875_98289710
ONT_simulated_read_6290590	chr11	+	678	5	ISM	ENSMUSG00000025156.18	ENSMUST00000172809.2	2000	14	0	2524	0	-2166	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCTGGACTGTGGGGACC	NA	NA	NA	NA	NA	NA	NA	NA	120675340	120677404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_120675552_120675946_120676040_120676525_120676708_120677127_120677293_120677377
ONT_simulated_read_629068	chr3	+	708	5	ISM	ENSMUSG00000032657.16	ENST00000350210.6	2339	9	-12	2491	0	-2491	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCACGATGGCTCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	89090947	89094104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89091256_89092195_89092304_89092743_89092917_89093040_89093141_89094085
ONT_simulated_read_6292550	chr6	+	588	1	ISM	ENSMUSG00000046947.13	ENSMUST00000140364.8	3542	8	91	14218	0	-13201	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCAAGAAGGGCCTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	39550897	39551485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_39550900_39551500
ONT_simulated_read_6292842	chr7	-	1318	1	ISM	ENSMUSG00000030499.10	ENSMUST00000108069.8	2407	7	13989	78	12275	-73	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTACAATTGTTCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	34339834	34338516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_34338500_34339800
ONT_simulated_read_6292867	chr13	+	785	1	ISM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	341	3647	341	-3339	mono-exon	FALSE	NA	NA	NA	NA	NA	565	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTAACGTCCACGCGCTG	NA	NA	NA	NA	NA	NA	NA	NA	55468653	55469438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_55468700_55469400
ONT_simulated_read_6294988	chr13	-	250	1	ISM	ENSMUSG00000021569.11	ENSMUST00000022053.11	3399	13	24468	1720	24468	-1720	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGCTTGTCTTTTTCAC	NA	NA	NA	NA	NA	NA	NA	NA	74061435	74061185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_74061200_74061400
ONT_simulated_read_629734	chr10	-	2616	1	ISM	ENSMUSG00000075327.11	ENSMUST00000100077.5	3086	3	17651	134	17651	-134	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTAGTGCATAGCTATACC	NA	NA	NA	NA	NA	NA	NA	NA	4319824	4317208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_4317200_4319800
ONT_simulated_read_6297457	chr11	+	875	1	ISM	ENSMUSG00000087574.2	ENSMUST00000138007.2	3220	2	1844	1237	0	-1237	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGTGTGCTTCCTCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	88611314	88612189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_88611300_88612200
ONT_simulated_read_6299573	chr17	+	1443	9	ISM	ENSMUSG00000041130.11	ENSMUST00000047179.7	3283	12	0	2347	0	-2347	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGCCTTGGTTTCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	24888720	24898643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_24888948_24895527_24895641_24896029_24896160_24896383_24896596_24896808_24897027_24897569_24897679_24898010_24898199_24898294_24898380_24898482
ONT_simulated_read_6299934	chr3	-	1094	10	ISM	ENSMUSG00000028107.15	ENSMUST00000029752.15	2400	18	3919	2682	3548	1195	internal_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTGGTCGGCCCCATCA	NA	NA	NA	NA	NA	NA	NA	NA	95658264	95649969	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178
ONT_simulated_read_630032	chr2	+	1352	11	ISM	ENSMUSG00000042410.17	ENSMUST00000175646.2	1839	20	35878	-414	35878	281	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTGAGTAGGTCATTGG	NA	NA	NA	NA	NA	NA	NA	NA	75698726	75756836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_75698758_75707814_75707943_75718459_75718512_75722135_75722213_75724388_75724502_75730525_75730596_75733261_75733324_75735202_75735293_75739944_75740045_75741964_75742023_75756265
ONT_simulated_read_6301369	chr6	-	699	1	NIC	ENSMUSG00000030353.16	novel	1718	12	NA	NA	47101	403	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGCTTTGTTCTTTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	128205439	128204740	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_128204700_128205400
ONT_simulated_read_6301754	chr14	-	1173	6	ISM	ENSMUSG00000041028.17	ENSMUST00000042564.17	2573	9	3490	954	3490	-954	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGACAAGTTTTTGTATAG	NA	NA	NA	NA	NA	NA	NA	NA	36853606	36843734	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494
ONT_simulated_read_6302722	chr2	+	1024	1	FSM	ENSMUSG00000075312.5	ENSMUST00000121239.2	375	1	0	-649	0	649	mono-exon	FALSE	NA	NA	NA	NA	NA	612	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTTTGGTACAAAAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	68384898	68385922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_68384900_68385900
ONT_simulated_read_630283	chr4	-	1706	11	ISM	ENSMUSG00000040183.14	ENST00000522441.5	2364	16	39656	0	35966	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGACCCTCAGCTGGACC	NA	NA	NA	NA	NA	NA	NA	NA	32824476	32806110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_32806643_32808683_32808811_32810197_32810312_32815234_32815388_32816910_32817097_32817418_32817551_32818604_32818710_32821256_32821335_32822152_32822252_32823405_32823505_32824395
ONT_simulated_read_6305733	chr9	-	2042	1	ISM	ENSMUSG00000019471.11	ENSMUST00000019615.11	7851	8	10019	4700	10019	-4700	mono-exon	FALSE	NA	NA	NA	NA	NA	432	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGAGCTGCATCAGTTGA	NA	NA	NA	NA	NA	NA	NA	NA	21051259	21049217	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21049200_21051300
ONT_simulated_read_6308604	chr1	+	962	6	ISM	ENSMUSG00000042581.15	ENSMUST00000073527.13	6213	28	642195	59683	320172	-59680	internal_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAGAACTCGGCATCTG	NA	NA	NA	NA	NA	NA	NA	NA	129843275	130087332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_129843485_129848984_129849252_129879126_129879306_130030807_130030942_130044296_130044448_130087310
ONT_simulated_read_6308782	chr8	-	767	2	ISM	ENSMUSG00000034424.6	ENSMUST00000040484.6	1443	5	9617	263	9617	-263	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	175	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTTTGTTTCACCAT	NA	NA	NA	NA	NA	NA	NA	NA	117710659	117708811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_117709466_117710546
ONT_simulated_read_6311302	chr15	-	786	8	ISM	ENSMUSG00000022404.9	ENSMUST00000023040.9	1724	9	16655	798	16655	-798	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCATGTTCCTTGTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	81228358	81203909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222289_81224174_81224242_81228301
ONT_simulated_read_631305	chr6	+	350	1	ISM	ENSMUSG00000040242.15	ENSMUST00000067404.13	2766	6	0	20990	0	-14657	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACGGAAAGTTCCCTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	146479356	146479706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_146479400_146479700
ONT_simulated_read_6315538	chr11	-	479	1	NIC	ENSMUSG00000010392.9	novel	857	8	NA	NA	24597	-3126	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGTGAATAAAAGTAATTT	NA	NA	NA	NA	NA	NA	NA	NA	76621032	76620553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_76620600_76621000
ONT_simulated_read_6316198	chr6	-	202	1	FSM	ENSMUSG00000105005.2	ENSMUST00000196364.2	265	1	0	63	0	-63	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGACAAGAGTGCCAAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	67860594	67860392	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_67860400_67860600
ONT_simulated_read_6316315	chr18	-	933	10	ISM	ENSMUSG00000053644.14	ENST00000636886.1	1296	13	11811	484	11811	-484	internal_fragment	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCCGAAAAGACCTAAAC	NA	NA	NA	NA	NA	NA	NA	NA	56683492	56665044	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367
ONT_simulated_read_6316417	chr19	-	456	7	ISM	ENSMUSG00000024725.14	ENSMUST00000025631.7	2726	10	37898	1974	37762	-1974	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACTACCTCGATGACGAA	NA	NA	NA	NA	NA	NA	NA	NA	18571255	18558665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_18558693_18562005_18562108_18563910_18563990_18567068_18567119_18567764_18567873_18569946_18570001_18571219
ONT_simulated_read_6317024	chr7	-	199	1	ISM	ENSMUSG00000030509.18	ENSMUST00000124899.8	4928	6	41686	3147	41625	-711	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATGCAATTTCTGATTTG	NA	NA	NA	NA	NA	NA	NA	NA	66297658	66297459	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_66297500_66297700
ONT_simulated_read_632268	chr10	+	4005	4	ISM	ENSMUSG00000048701.14	ENSMUST00000147545.8	5511	9	77890	501	77890	-501	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGCTCAGCTTTGCCGT	NA	NA	NA	NA	NA	NA	NA	NA	70010840	70028529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_70010998_70017989_70018091_70023520_70023646_70024907
ONT_simulated_read_6327337	chr1	-	592	5	ISM	ENSMUSG00000006299.14	ENSMUST00000178235.8	1756	11	3046	330	3046	-330	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGCAGAGTTGCGGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	74320793	74319334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685
ONT_simulated_read_6327814	chr5	-	1381	5	ISM	ENSMUSG00000040351.12	ENST00000265742.8	6081	20	101110	2065	101056	-2065	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTCTAGCCTGCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	3751869	3742481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_3743497_3743771_3743906_3744778_3744894_3750355_3750408_3751804
ONT_simulated_read_6330636	chr2	-	786	2	ISM	ENSMUSG00000074813.15	ENSMUST00000239302.2	794	5	98277	-468	2767	213	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGAAGGGTTGTTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	128172966	128142332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_128142917_128172764
ONT_simulated_read_6331347	chr3	-	859	3	ISM	ENSMUSG00000015697.15	ENSMUST00000107171.10	4573	22	17097	13722	16139	4407	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTAACTATCCAGGCCAC	NA	NA	NA	NA	NA	NA	NA	NA	95247370	95244557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95244577_95245656_95246344_95247217
ONT_simulated_read_6331805	chr10	-	1021	1	ISM	ENSMUSG00000034620.18	ENSMUST00000140299.3	4793	6	15682	2555	15682	-2555	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGATGTGTGGGTAAAATA	NA	NA	NA	NA	NA	NA	NA	NA	121917594	121916573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_121916600_121917600
ONT_simulated_read_6331852	chr9	-	274	1	ISM	ENSMUSG00000032175.12	ENSMUST00000001036.11	4619	23	22164	840	18959	140	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGGGGCTAATTGGGATT	NA	NA	NA	NA	NA	NA	NA	NA	21016478	21016204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21016200_21016500
ONT_simulated_read_6332732	chr3	-	2219	4	ISM	ENSMUSG00000040998.19	ENSMUST00000117456.8	3383	12	58365	0	58365	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACTAC	NA	NA	NA	NA	NA	NA	NA	NA	132597210	132588459	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_132590275_132591516_132591774_132596524_132596624_132597162
ONT_simulated_read_633522	chr19	-	955	5	FSM	ENSMUSG00000024847.16	ENST00000528641.7	1048	5	94	-1	67	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTTTGCAGAACTAATC	NA	NA	NA	NA	NA	NA	NA	NA	4171458	4164463	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4168086_4168267_4171335
ONT_simulated_read_6335262	chr18	+	1400	12	ISM	ENSMUSG00000024384.5	ENSMUST00000212675.2	2936	15	15498	241	15498	-241	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCTTGCCTGGGACGTGT	NA	NA	NA	NA	NA	NA	NA	NA	32216318	32230331	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_32216512_32217231_32217290_32217705_32217804_32219325_32219477_32220122_32220206_32221308_32221439_32222441_32222560_32223481_32223594_32224198_32224256_32226170_32226283_32226591_32226751_32230202
ONT_simulated_read_633584	chr14	+	361	4	ISM	ENSMUSG00000022111.10	ENSMUST00000002289.8	903	9	11802	27573	11802	-27573	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGCACATGAAGGTCAGAC	NA	NA	NA	NA	NA	NA	NA	NA	101903231	101905988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_101903326_101903947_101904105_101904427_101904514_101905964
ONT_simulated_read_6336328	chr12	+	938	7	ISM	ENSMUSG00000034574.11	ENST00000360909.8	5789	25	21	47102	21	-47096	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAAGTCTCAAGACGGCC	NA	NA	NA	NA	NA	NA	NA	NA	71877889	71992003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_71877971_71942500_71942721_71962472_71962563_71983332_71983405_71988946_71989042_71990827_71991162_71991957
ONT_simulated_read_6338415	chr11	-	1875	1	NIC	ENSMUSG00000006920.15	novel	4207	21	NA	NA	17999	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTCTGTATACTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	101090193	101088318	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_101088300_101090200
ONT_simulated_read_6340600	chr5	-	2157	15	ISM	ENSMUSG00000037364.13	ENSMUST00000199243.5	2988	20	4992	525	4513	-412	internal_fragment	FALSE	non_canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTGGGCTATGGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	137300936	137294497	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788
ONT_simulated_read_634297	chr2	-	967	1	ISM	ENSMUSG00000033096.8	ENSMUST00000046399.7	2235	9	24392	129	24392	-129	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGATGTGATTAGTGAACT	NA	NA	NA	NA	NA	NA	NA	NA	150426095	150425128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_150425100_150426100
ONT_simulated_read_6349978	chr4	+	200	1	ISM	ENSMUSG00000036241.4	ENSMUST00000040008.4	3600	5	0	57438	0	-57438	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAGGCGTGTGAGGACAG	NA	NA	NA	NA	NA	NA	NA	NA	41135742	41135942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_41135700_41135900
ONT_simulated_read_6354594	chr11	-	1926	15	ISM	ENSMUSG00000002812.5	ENSMUST00000002889.5	4060	30	7405	967	5407	-798	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGACTGAGAAATGCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	60610684	60605935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518
ONT_simulated_read_6357347	chr8	-	885	1	ISM	ENSMUSG00000004383.19	ENSMUST00000004497.11	3669	15	536550	523	536550	-523	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATTCCAAGTTTCCACT	NA	NA	NA	NA	NA	NA	NA	NA	73542634	73541749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_73541700_73542600
ONT_simulated_read_6359774	chr7	+	457	4	ISM	ENSMUSG00000012848.16	ENSMUST00000108539.8	794	6	46	898	18	-889	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCAACACGCATTGGGCG	NA	NA	NA	NA	NA	NA	NA	NA	12656262	12659714	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_12656350_12656899_12657009_12659318_12659529_12659663
ONT_simulated_read_636183	chr7	-	1384	1	FSM	ENSMUSG00000074024.6	ENSMUST00000182578.2	3832	1	2207	241	2198	-241	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCAGTGGTTTGGGTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	92388469	92387085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_92387100_92388500
ONT_simulated_read_636219	chr12	-	1070	4	ISM	ENSMUSG00000021139.18	ENSMUST00000166664.2	2284	6	28246	907	28246	-907	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGAATTCTAAATACCTG	NA	NA	NA	NA	NA	NA	NA	NA	81551410	81518283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_81519126_81521360_81521424_81527704_81527777_81551317
ONT_simulated_read_6362492	chr5	-	837	4	ISM	ENSMUSG00000042726.15	ENSMUST00000120784.8	2425	12	6669	3371	6669	-3371	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGCTGCTGTGGAAGACA	NA	NA	NA	NA	NA	NA	NA	NA	121516965	121513163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_121513310_121513858_121513936_121515800_121516008_121516558
ONT_simulated_read_636286	chr5	-	1003	6	ISM	ENSMUSG00000029718.15	ENSMUST00000054564.13	1585	10	3296	0	3296	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGATCGTGTCTGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	137606342	137603369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216
ONT_simulated_read_636301	chr17	-	541	4	ISM	ENSMUSG00000063239.18	ENST00000544773.6	2491	10	26597	8771	26597	-8771	internal_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAGACGGTGAAGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	27669221	27654362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_27654443_27657269_27657407_27657635_27657837_27669098
ONT_simulated_read_6363806	chrX	+	1237	6	ISM	ENSMUSG00000000266.12	ENSMUST00000112993.2	5916	9	0	16822	0	-13102	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACGACGAATTCAGCATC	NA	NA	NA	NA	NA	NA	NA	NA	139578776	139651642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_139579461_139593815_139593912_139637183_139637292_139639068_139639218_139650320_139650449_139651570
ONT_simulated_read_6364559	chr2	-	277	3	ISM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	493	1129	384	-541	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	194	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAGAAAGGAAGCTGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	25114221	25113300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25113381_25113945_25114057_25114135
ONT_simulated_read_6364653	chr16	-	1380	1	ISM	ENSMUSG00000002844.10	ENSMUST00000002923.10	2966	4	6624	670	6624	-670	mono-exon	FALSE	NA	NA	NA	NA	NA	681	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	38266441	38265061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_38265100_38266400
ONT_simulated_read_6365809	chr15	-	256	2	ISM	ENSMUSG00000022568.18	ENST00000674084.1	5146	35	20757	1145	20757	-1145	internal_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCGTGGCAAGAGAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	75920486	75920153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75920214_75920290
ONT_simulated_read_6367094	chr6	-	623	7	ISM	ENSMUSG00000029780.15	ENSMUST00000101367.9	1519	10	8997	1409	8997	-1409	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGACTACTTCAGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	56869874	56860793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774
ONT_simulated_read_6367648	chr2	-	248	1	ISM	ENSMUSG00000063972.14	ENSMUST00000168098.8	5877	9	56637	4257	56637	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	214	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGATGCACATGCTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	38617890	38617642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_38617600_38617900
ONT_simulated_read_6369402	chr9	+	1191	13	ISM	ENSMUSG00000057193.9	ENSMUST00000034697.8	3456	22	0	9509	0	-8463	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGACCTTCTTCCTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	21249123	21256812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774
ONT_simulated_read_6373182	chr16	-	2579	19	ISM	ENSMUSG00000014039.19	ENST00000269844.5	3856	24	16104	1547	15415	-1547	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCGAAAAGGAGCCAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	97637012	97596922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604909_97605042_97607244_97607365_97607674_97607755_97608208_97608373_97608921_97609057_97609854_97609987_97612256_97612352_97613757_97613926_97617305_97617394_97617735_97617831_97618063_97618246_97619411_97619542_97622967_97623211_97630810_97630913_97636777
ONT_simulated_read_6373867	chr7	+	1349	3	NNC	ENSMUSG00000042340.7	novel	1352	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTCCATGTGGGGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	127311907	127317364	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_127311952_127313099_127313216_127316175
ONT_simulated_read_6375683	chr11	-	317	1	ISM	ENSMUSG00000018362.15	ENST00000676857.1	2074	11	10615	3	10424	0	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTTTTCTTAATTGA	NA	NA	NA	NA	NA	NA	NA	NA	106879771	106879454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106879500_106879800
ONT_simulated_read_6376615	chr13	-	263	2	ISM	ENSMUSG00000008859.9	ENSMUST00000009003.9	2688	5	55584	1817	55584	-1817	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTATAATCAAAGCCCAA	NA	NA	NA	NA	NA	NA	NA	NA	18063240	18056972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_18057087_18063091
ONT_simulated_read_6377132	chr7	-	2547	13	ISM	ENSMUSG00000035401.10	ENST00000524767.5	4087	21	17332	4272	17332	-4272	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAAACTGTAGTACAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	98286727	98244110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_98244520_98246239_98246392_98248958_98249001_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467
ONT_simulated_read_6378386	chrX	-	768	1	ISM	ENSMUSG00000040749.12	ENSMUST00000037928.9	1783	4	3925	724	3925	-724	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATTTTGCCTATCGACT	NA	NA	NA	NA	NA	NA	NA	NA	162855192	162854424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_162854400_162855200
ONT_simulated_read_6379298	chr10	-	332	2	ISM	ENSMUSG00000020083.14	ENSMUST00000142821.8	1283	3	937	707	937	-82	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGTTCGTGGCCTCCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	61945787	61944695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_61944903_61945662
ONT_simulated_read_6379872	chr17	-	1021	7	ISM	ENSMUSG00000004865.17	ENSMUST00000130643.9	4653	16	22284	2527	22026	-2527	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCCTCAGGAGGAGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	28819399	28809148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216
ONT_simulated_read_6383012	chr11	-	545	1	ISM	ENSMUSG00000000751.14	ENSMUST00000092907.12	5077	17	46921	2693	46907	-509	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGGTCTGTTTTGCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	75192229	75191684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_75191700_75192200
ONT_simulated_read_63832	chr7	-	1544	1	ISM	ENSMUSG00000039405.8	ENSMUST00000041761.7	3228	2	6796	1464	6796	-144	mono-exon	FALSE	NA	NA	NA	NA	NA	295	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATTCAAACATTTACGTA	NA	NA	NA	NA	NA	NA	NA	NA	89159998	89158454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_89158500_89160000
ONT_simulated_read_6384203	chr7	-	960	1	ISM	ENSMUSG00000002985.17	ENSMUST00000174064.9	1408	4	2120	0	1199	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTACCACTGAGCCACGCC	NA	NA	NA	NA	NA	NA	NA	NA	19430993	19430033	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_19430000_19431000
ONT_simulated_read_6384519	chr8	-	504	3	ISM	ENSMUSG00000004996.10	ENSMUST00000126435.8	2819	5	911	4025	852	-4025	internal_fragment	FALSE	canonical	NA	NA	NA	NA	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGTCATAGAGGAACGCC	NA	NA	NA	NA	NA	NA	NA	NA	84983042	84980559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_84980717_84980804_84980982_84982872
ONT_simulated_read_6386880	chr6	-	242	1	NIC	ENSMUSG00000012483.5	novel	670	4	NA	NA	2925	-71	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTTTTTATAAACTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	8256248	8256006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_8256000_8256200
ONT_simulated_read_6388307	chr6	+	1112	1	ISM	ENSMUSG00000009376.16	ENSMUST00000115443.8	6809	22	27441	81628	0	-79471	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTTCAACAAGATTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	17491239	17492351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_17491200_17492400
ONT_simulated_read_6388477	chr12	-	628	3	ISM	ENSMUSG00000002020.16	ENSMUST00000163189.8	6470	35	90996	869	90996	-869	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGACTTAAGATTGCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	84832257	84830971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_84831170_84831527_84831678_84831977
ONT_simulated_read_6393161	chr4	+	1035	5	ISM	ENSMUSG00000006392.17	ENSMUST00000019229.15	1145	7	2262	0	2262	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	118268824	118272308	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
ONT_simulated_read_639619	chr5	-	893	3	ISM	ENSMUSG00000029610.14	ENSMUST00000031613.11	1185	4	3117	0	2995	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTATTTTATTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	143843540	143839521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_143840009_143841382_143841615_143843366
ONT_simulated_read_6396941	chr15	+	1004	6	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	0	11162	0	-11140	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	171	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGGACCCGGTGTCGATT	NA	NA	NA	NA	NA	NA	NA	NA	81756509	81788172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056
ONT_simulated_read_6397168	chr1	-	1239	8	ISM	ENSMUSG00000041879.14	ENSMUST00000041023.14	6247	24	36136	3976	36136	-3976	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGGAGGAGGAGGAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	135322101	135314025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873
ONT_simulated_read_6397650	chr14	-	2882	1	ISM	ENSMUSG00000040123.18	ENSMUST00000039812.16	5290	8	17233	1017	16981	-1014	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCCTATCACCATAGCAC	NA	NA	NA	NA	NA	NA	NA	NA	57031940	57029058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_57029100_57031900
ONT_simulated_read_6399057	chr17	+	915	5	ISM	ENSMUSG00000023921.10	ENSMUST00000169611.4	3674	13	20503	984	20503	-984	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAAATAATTGAACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	41266078	41271895	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458
ONT_simulated_read_6399671	chr1	-	1072	1	ISM	ENSMUSG00000026430.17	ENSMUST00000068564.15	3076	5	21503	1151	21503	964	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGCTCGCAGCACAGC	NA	NA	NA	NA	NA	NA	NA	NA	131106369	131105297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_131105300_131106400
ONT_simulated_read_640248	chr9	+	496	3	ISM	ENSMUSG00000032264.10	ENSMUST00000034803.10	2863	16	11094	9022	11094	-9022	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGTTAATGGAGCTCGC	NA	NA	NA	NA	NA	NA	NA	NA	48978006	48981050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_48978143_48979959_48980143_48980873
ONT_simulated_read_6402912	chr11	-	668	2	ISM	ENSMUSG00000018733.11	ENSMUST00000175741.8	2337	4	365	2514	365	-2513	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGGCTGGAGTTCGGTT	NA	NA	NA	NA	NA	NA	NA	NA	83189356	83188414	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_83188868_83189141
ONT_simulated_read_6406757	chr7	-	661	7	ISM	ENSMUSG00000030619.11	ENST00000528180.5	1733	10	3968	1583	3584	-1410	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTGAGTCTAATGTGACT	NA	NA	NA	NA	NA	NA	NA	NA	89626239	89605554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_89605622_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104
ONT_simulated_read_6407810	chr4	+	836	5	ISM	ENSMUSG00000028414.18	ENST00000675668.1	1332	9	-44	13126	0	-13126	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTATCGAGTGCAGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	53720004	53737615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_53720210_53729979_53730040_53731131_53731336_53734849_53735128_53737526
ONT_simulated_read_6408306	chr10	+	358	4	ISM	ENSMUSG00000019978.17	ENST00000525193.5	2070	14	42694	5288	-6503	-5288	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTGAAACACGAATTGAG	NA	NA	NA	NA	NA	NA	NA	NA	25360178	25383690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_25360279_25364848_25364992_25382072_25382172_25383674
ONT_simulated_read_6410302	chr9	-	333	1	FSM	ENSMUSG00000110726.2	ENSMUST00000215769.2	548	1	0	215	0	-215	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGGTGATGCTGGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	120584592	120584259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_120584300_120584600
ONT_simulated_read_6411971	chr17	-	705	6	ISM	ENSMUSG00000036026.16	ENSMUST00000113523.9	3284	24	16236	5027	16236	-5027	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTCCGCCTTCTTCGAAG	NA	NA	NA	NA	NA	NA	NA	NA	45980949	45976123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_45976198_45976952_45977107_45977242_45977381_45977503_45977638_45978620_45978745_45980868
ONT_simulated_read_6413307	chr6	-	244	1	ISM	ENSMUSG00000029821.16	ENSMUST00000101405.10	4383	9	58402	2878	58402	-2878	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGTAGTCTCAAAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	50180325	50180081	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_50180100_50180300
ONT_simulated_read_6415244	chr3	+	643	6	ISM	ENSMUSG00000028049.16	ENSMUST00000120697.8	1475	9	47	1975	17	-1973	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTGGCTCAGGCTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	89084843	89088097	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89084965_89085296_89085375_89086398_89086531_89086623_89086745_89087558_89087688_89088035
ONT_simulated_read_6415629	chr1	+	1191	5	ISM	ENSMUSG00000040918.13	ENSMUST00000159230.8	3432	6	198	2671	0	-820	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTCTGCTCACTCTGAT	NA	NA	NA	NA	NA	NA	NA	NA	164076821	164090267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_164077026_164084315_164084805_164088360_164088587_164089615_164089809_164090188
ONT_simulated_read_6417112	chr10	-	564	4	ISM	ENSMUSG00000020061.19	ENST00000549608.1	1722	9	11451	138	11451	-138	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAATACTGAGGGCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	88362294	88354342	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_88354432_88358828_88359016_88360830_88360968_88362143
ONT_simulated_read_6417402	chr11	-	625	1	ISM	ENSMUSG00000000753.16	ENSMUST00000000769.14	1832	8	12308	0	7598	0	mono-exon	FALSE	NA	NA	NA	NA	NA	583	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAAATCAACAGCTGCATT	NA	NA	NA	NA	NA	NA	NA	NA	75301219	75300594	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_75300600_75301200
ONT_simulated_read_6419302	chr15	-	480	4	ISM	ENSMUSG00000022263.11	ENST00000344135.5	4016	10	10968	2315	10968	-2315	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCTGTCCAGCTCAACACC	NA	NA	NA	NA	NA	NA	NA	NA	27736608	27733052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_27733117_27733591_27733731_27735464_27735666_27736532
ONT_simulated_read_6420694	chr1	-	1270	1	ISM	ENSMUSG00000046836.14	ENSMUST00000057062.12	3430	14	18555	796	18555	-794	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATACATCTCATGATGA	NA	NA	NA	NA	NA	NA	NA	NA	183059981	183058711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_183058700_183060000
ONT_simulated_read_6422293	chr8	-	449	3	ISM	ENSMUSG00000006276.11	ENSMUST00000163643.3	3129	24	63044	387	63035	-385	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAGGTGACACAGGGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	73112260	73095229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_73095369_73099809_73100016_73112156
ONT_simulated_read_6422312	chr17	-	1004	6	ISM	ENSMUSG00000019578.12	ENSMUST00000019722.12	2949	11	4301	1296	4301	-1296	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGCACACAGGCTGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	56377727	56375340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56375684_56375959_56376109_56376183_56376315_56376393_56376614_56376690_56376776_56377651
ONT_simulated_read_6422540	chr9	+	394	4	ISM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	310	7018	310	-7018	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	195	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCGGCCTCTCTCTTAT	NA	NA	NA	NA	NA	NA	NA	NA	108183637	108208115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069
ONT_simulated_read_6426570	chr7	-	1340	10	NNC	ENSMUSG00000089832.9	novel	2358	18	NA	NA	4153	-279	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTCAGATGGCCGCCAAC	NA	NA	NA	NA	NA	NA	NA	NA	27051291	27041836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_27041970_27042070_27042183_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120
ONT_simulated_read_6426778	chr13	+	804	4	ISM	ENSMUSG00000021583.8	ENST00000296754.7	2940	19	25	30408	25	-30408	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTTGACATCACTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	74787973	74808426	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_74788057_74794289_74794834_74805751_74805891_74808388
ONT_simulated_read_6427845	chr8	-	2251	13	ISM	ENSMUSG00000031834.16	ENSMUST00000034296.15	3165	16	4328	0	4328	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTCTTTGGGGACTGG	NA	NA	NA	NA	NA	NA	NA	NA	71225029	71220819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_71221542_71221705_71221877_71221991_71222064_71222232_71222410_71222548_71222692_71223020_71223147_71223227_71223409_71223490_71223590_71223697_71223807_71223932_71224019_71224476_71224676_71224776_71224909_71224995
ONT_simulated_read_6428636	chr16	-	649	1	ISM	ENSMUSG00000013539.15	ENSMUST00000115628.10	1622	9	42513	54	22926	-54	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAGGAATGTGAACTTGA	NA	NA	NA	NA	NA	NA	NA	NA	18119393	18118744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_18118700_18119400
ONT_simulated_read_6430061	chr11	+	281	1	ISM	ENSMUSG00000040528.16	ENSMUST00000147326.9	1234	8	17211	77	17169	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCTCAGTGTTTTGAATT	NA	NA	NA	NA	NA	NA	NA	NA	106659262	106659543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_106659300_106659500
ONT_simulated_read_6434539	chr11	-	1059	3	ISM	ENSMUSG00000020283.6	ENSMUST00000020523.4	4146	4	9829	2874	9829	-2874	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAAGGTTTCCAGTGCAC	NA	NA	NA	NA	NA	NA	NA	NA	23606130	23599352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_23599591_23600929_23601056_23605435
ONT_simulated_read_6436455	chr7	-	1676	8	ISM	ENSMUSG00000003269.18	ENSMUST00000107729.10	2519	12	2726	271	2293	-271	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAGCCTTCTGGGAATTAA	NA	NA	NA	NA	NA	NA	NA	NA	45461009	45456331	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45457273_45457356_45457512_45457599_45457672_45457796_45457874_45459550_45459663_45459994_45460144_45460277_45460391_45460952
ONT_simulated_read_6440170	chr8	-	1522	4	ISM	ENSMUSG00000031729.7	ENSMUST00000034164.6	2304	10	15573	139	1823	-139	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	411	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCATTGGAAGATGAGAT	NA	NA	NA	NA	NA	NA	NA	NA	110404319	110398095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_110399274_110402007_110402057_110403389_110403483_110404117
ONT_simulated_read_6442984	chr4	-	1330	9	ISM	ENSMUSG00000029060.18	ENST00000504599.6	2877	18	3593	661	3593	-661	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGCCCCCGGGCCCCCGG	NA	NA	NA	NA	NA	NA	NA	NA	155742217	155739870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054
ONT_simulated_read_6446440	chr11	-	715	1	ISM	ENSMUSG00000020523.15	ENSMUST00000020831.13	2557	14	34504	406	30074	-327	mono-exon	FALSE	NA	NA	NA	NA	NA	235	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGAGTCTCTTCAGGC	NA	NA	NA	NA	NA	NA	NA	NA	57374939	57374224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_57374200_57374900
ONT_simulated_read_6449343	chr10	-	1613	1	FSM	ENSMUSG00000074748.4	ENSMUST00000099276.4	3566	1	1018	935	1018	-935	mono-exon	FALSE	NA	NA	NA	NA	NA	240	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTTGTTGCCTTCTCA	NA	NA	NA	NA	NA	NA	NA	NA	112763882	112762269	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_112762300_112763900
ONT_simulated_read_6449432	chr2	-	749	7	ISM	ENSMUSG00000026958.14	ENSMUST00000028332.8	1682	13	666	1179	666	-1179	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTTCCTGAAATCCCATT	NA	NA	NA	NA	NA	NA	NA	NA	25245705	25243480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569
ONT_simulated_read_6449699	chr17	-	431	4	ISM	ENSMUSG00000008668.16	ENSMUST00000174609.9	527	5	537	0	537	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	34174100	34170972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_34171093_34171194_34171268_34171376_34171566_34174051
ONT_simulated_read_645030	chr7	-	2471	1	ISM	ENSMUSG00000031077.8	ENSMUST00000033394.8	3903	2	1639	1036	1639	-1036	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAAAGGCTTGTCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	144134561	144132090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_144132100_144134600
ONT_simulated_read_6451904	chr11	-	1029	4	FSM	ENSMUSG00000018168.9	ENST00000377944.7	1029	4	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCAATGCGAGGGTCAAC	NA	NA	NA	NA	NA	NA	NA	NA	98407763	98357804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_98358513_98367752_98367870_98376399_98376517_98407676
ONT_simulated_read_645219	chr2	+	1215	8	ISM	ENSMUSG00000026728.10	ENSMUST00000028062.8	2193	9	571	1181	242	-1180	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	1929	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCACTCAAAAAGAACACTC	NA	NA	NA	NA	NA	NA	NA	NA	13579333	13586456	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423
ONT_simulated_read_6452631	chr5	-	469	1	FSM	ENSMUSG00000104970.2	ENSMUST00000198052.2	594	1	125	0	125	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGAAGTCCTTTTCTAA	NA	NA	NA	NA	NA	NA	NA	NA	110378942	110378473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_110378500_110378900
ONT_simulated_read_6452900	chr14	-	1316	2	ISM	ENSMUSG00000055639.17	ENSMUST00000071533.13	5219	12	341749	1504	341749	-1497	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAGTTAAACTGTGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	98065230	98025792	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_98027056_98065177
ONT_simulated_read_6453303	chr2	+	710	4	ISM	ENSMUSG00000015094.17	ENSMUST00000071442.12	1485	9	36	1491	-36	-1474	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCACCCTTGGTAGGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	25293118	25298015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_25293378_25296226_25296374_25297607_25297749_25297852
ONT_simulated_read_645462	chr13	-	1309	8	ISM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	10795	6354	10795	-6354	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAATGTATCATTGTAACT	NA	NA	NA	NA	NA	NA	NA	NA	9035324	9022720	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244
ONT_simulated_read_6457520	chr11	+	2716	7	ISM	ENSMUSG00000000976.14	ENSMUST00000001002.8	5614	20	20728	658	20728	-658	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGGTTCAGTTGAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	83665249	83673922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_83665335_83666526_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
ONT_simulated_read_6460061	chr12	-	775	6	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	794	345	794	-345	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTCCAACGCTGACCGC	NA	NA	NA	NA	NA	NA	NA	NA	111637978	111636139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858
ONT_simulated_read_6460879	chr11	+	276	1	ISM	ENSMUSG00000049807.17	ENSMUST00000121799.8	5816	24	36597	49997	-1707	-38825	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTGACCCCAGCAAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	97342955	97343231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_97343000_97343200
ONT_simulated_read_6461591	chr11	+	1126	5	ISM	ENSMUSG00000034579.18	ENST00000215885.4	1949	7	94	1556	15	-1556	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTCGCCACCTGGACC	NA	NA	NA	NA	NA	NA	NA	NA	3438298	3441910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_3438854_3439761_3439895_3440142_3440278_3440806_3441091_3441891
ONT_simulated_read_6461839	chr4	-	907	1	ISM	ENSMUSG00000028540.7	ENSMUST00000030265.4	2555	6	2379	104	2379	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATAGCAGGCTCCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	117746850	117745943	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_117745900_117746800
ONT_simulated_read_6463319	chr11	-	830	1	ISM	ENSMUSG00000035086.14	ENSMUST00000130916.8	4365	12	13329	2176	13292	290	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCCAGCACTGAGAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	101179783	101178953	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_101179000_101179800
ONT_simulated_read_6465143	chr2	+	445	3	ISM	ENSMUSG00000068735.15	ENST00000533940.5	887	5	1299	184	1299	-184	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTCTCCTGGGATTCTAG	NA	NA	NA	NA	NA	NA	NA	NA	93029263	93030400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_93029337_93029701_93029804_93030130
ONT_simulated_read_6466759	chr7	-	3044	1	ISM	ENSMUSG00000002265.18	ENSMUST00000239104.2	8986	9	18690	4796	18690	-4796	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTGATGACGCTTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	6714730	6711686	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_6711700_6714700
ONT_simulated_read_6469898	chr9	+	1103	1	ISM	ENSMUSG00000038535.18	ENSMUST00000098576.10	4387	22	87574	222	2251	-72	mono-exon	FALSE	NA	NA	NA	NA	NA	236	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTTAGATATAGAAATGA	NA	NA	NA	NA	NA	NA	NA	NA	72269734	72270837	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_72269700_72270800
ONT_simulated_read_6472221	chr15	-	2477	4	ISM	ENSMUSG00000009575.15	ENSMUST00000108813.10	3661	5	2097	1100	2050	-1100	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTCTCTCTGTAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	103121682	103106213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498
ONT_simulated_read_6474898	chr11	+	981	9	ISM	ENSMUSG00000017221.15	ENSMUST00000017365.15	2148	12	5233	345	5233	-345	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTTTTTCTCTTTTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	98578612	98586460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_98578641_98581288_98581480_98581741_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
ONT_simulated_read_6476398	chr11	-	2150	8	NNC	ENSMUSG00000040548.17	novel	4939	12	NA	NA	34710	-485	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTACGTTTGTGCATTTG	NA	NA	NA	NA	NA	NA	NA	NA	106435229	106393457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_106394545_106397692_106397814_106402727_106402938_106404412_106404533_106410707_106410841_106420087_106420188_106424696_106424844_106434997
ONT_simulated_read_6476784	chr1	-	840	6	ISM	ENSMUSG00000025980.15	ENST00000452200.6	2388	12	28	4268	28	-4268	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATAGAGGATATATTTCC	NA	NA	NA	NA	NA	NA	NA	NA	55127330	55121261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
ONT_simulated_read_647729	chr5	-	390	3	ISM	ENSMUSG00000029499.12	ENSMUST00000031472.12	1041	5	2434	3373	0	-3095	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGACTTGCTTGTCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	110431618	110425520	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_110425641_110429062_110429226_110431511
ONT_simulated_read_6479799	chr7	-	1848	16	ISM	ENSMUSG00000015709.10	ENSMUST00000209133.2	6228	20	20378	3850	20378	-183	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGACGCAGGGGACTGGCAA	NA	NA	NA	NA	NA	NA	NA	NA	83996741	83899338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_83899363_83900573_83900711_83911600_83911752_83912386_83912526_83914782_83914883_83917112_83917237_83918046_83918120_83924542_83924695_83931304_83931380_83933200_83933336_83934981_83935059_83954004_83954091_83954401_83954468_83960080_83960184_83992949_83993164_83996549
ONT_simulated_read_6480975	chr3	-	254	1	ISM	ENSMUSG00000028063.16	ENSMUST00000029699.13	3156	12	21236	698	11213	24	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTATCTCAATCCTAAGT	NA	NA	NA	NA	NA	NA	NA	NA	88389406	88389152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_88389200_88389400
ONT_simulated_read_6482335	chr9	+	1276	1	FSM	ENSMUSG00000094437.3	ENSMUST00000178509.3	357	1	0	-919	0	919	mono-exon	FALSE	NA	NA	NA	NA	NA	580	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGTAGGCAACTTTAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	44375539	44376815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_44375500_44376800
ONT_simulated_read_648373	chr11	-	500	4	FSM	ENSMUSG00000038208.14	ENST00000619169.4	512	4	13	-1	13	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTGGGGTTTGGACCTG	NA	NA	NA	NA	NA	NA	NA	NA	98282571	98280745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_98280928_98281112_98281318_98281905_98281968_98282520
ONT_simulated_read_6484859	chr10	-	734	2	ISM	ENSMUSG00000020057.3	ENST00000544152.5	936	4	16263	0	16263	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	2885	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTGCATTAAACAAATGCT	NA	NA	NA	NA	NA	NA	NA	NA	88176525	88160057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_88160648_88176381
ONT_simulated_read_6487117	chr15	-	1561	11	ISM	ENSMUSG00000067713.8	ENSMUST00000168846.3	1652	12	5787	0	5787	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTTGATTTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	98723615	98710677	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568
ONT_simulated_read_6488341	chr17	+	2014	1	FSM	ENSMUSG00000061062.6	ENSMUST00000079363.6	1444	1	0	-570	0	570	mono-exon	FALSE	NA	NA	NA	NA	NA	1442	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTTTGTTGTTGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	78799010	78801024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_78799000_78801000
ONT_simulated_read_6489076	chr19	-	771	1	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	21808	-132	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAACTCAAGATAACATAAC	NA	NA	NA	NA	NA	NA	NA	NA	60187920	60187149	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_60187100_60187900
ONT_simulated_read_6489664	chr9	-	1175	9	ISM	ENSMUSG00000002028.14	ENST00000534358.8	16468	36	39612	27057	39612	-24169	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTTCTTCATTCGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	44752980	44741708	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44741803_44742520_44742695_44744157_44744343_44745194_44745318_44747098_44747220_44747440_44747537_44747847_44747995_44752267_44752382_44752859
ONT_simulated_read_6489954	chr5	-	1502	9	ISM	ENSMUSG00000036980.14	ENST00000344095.8	2676	15	4497	74	4494	-74	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAAGGTTTTCCCCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	138180973	138176957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859
ONT_simulated_read_6491147	chr17	-	219	1	ISM	ENSMUSG00000023806.11	ENSMUST00000231794.2	2243	8	218	43833	-108	-42813	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTTCCCCGAGAGCGGCGT	NA	NA	NA	NA	NA	NA	NA	NA	7215863	7215644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_7215600_7215900
ONT_simulated_read_6491186	chr14	-	2247	13	ISM	ENSMUSG00000053093.17	ENST00000355349.4	5926	37	13451	769	13451	-690	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGGCGGAGGAGAGGGCG	NA	NA	NA	NA	NA	NA	NA	NA	55216892	55208913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55208969_55209081_55209178_55210144_55210421_55210527_55210654_55210758_55210963_55211214_55211524_55212098_55212224_55212368_55212535_55212690_55212875_55213335_55213533_55216039_55216159_55216323_55216451_55216629
ONT_simulated_read_649388	chr13	+	1293	13	ISM	ENSMUSG00000021596.17	ENST00000429576.6	2886	19	81977	10044	81977	-9179	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATAAAATCTATGCGAT	NA	NA	NA	NA	NA	NA	NA	NA	76871805	77168891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_76871899_76879889_76879929_76905104_76905276_76907808_76907940_76949477_76949665_76954287_76954382_76971091_76971195_76972890_76972994_76973324_76973427_76973841_76973917_76975800_76975921_77073590_77073645_77168870
ONT_simulated_read_6494192	chr12	+	2194	17	ISM	ENSMUSG00000021198.17	ENSMUST00000085079.11	7762	47	0	100437	0	-100052	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAGAGGAGGAGGAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	102968147	103049820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_102968236_102977458_102977552_102987265_102987322_102988005_102988136_103008373_103008439_103013214_103013304_103013916_103013958_103016153_103016183_103025577_103025808_103027603_103027776_103029363_103029595_103036276_103036468_103037000_103037125_103038918_103039060_103041020_103041243_103045099_103045328_103049756
ONT_simulated_read_6495082	chr1	+	504	1	ISM	ENSMUSG00000053286.12	ENSMUST00000065625.12	2749	15	0	29116	0	-29116	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGGCTCCGGCCCTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	151304292	151304796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_151304300_151304800
ONT_simulated_read_6497863	chr3	+	313	4	ISM	ENSMUSG00000028137.10	ENSMUST00000199775.5	2351	12	39	6876	39	-6870	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGATGTCCGGAAGATGT	NA	NA	NA	NA	NA	NA	NA	NA	94386423	94392625	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_94386559_94387574_94387658_94392123_94392173_94392579
ONT_simulated_read_6497937	chr15	-	243	2	ISM	ENSMUSG00000022568.18	ENST00000674084.1	5146	35	20103	1780	20103	-1780	internal_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAGGTGAGGAGCCTAAC	NA	NA	NA	NA	NA	NA	NA	NA	75921140	75920788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75920943_75921051
ONT_simulated_read_6499024	chr19	-	1263	10	ISM	ENSMUSG00000118668.1	ENSMUST00000239527.1	3140	17	958	2596	958	-2596	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACGTGGTGAATCTGCAT	NA	NA	NA	NA	NA	NA	NA	NA	6817046	6809173	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6809230_6809318_6809453_6809623_6809753_6812468_6812634_6814694_6814846_6814947_6815052_6815123_6815205_6815422_6815531_6816619_6816736_6816827
ONT_simulated_read_6502497	chr15	-	274	1	NIC	ENSMUSG00000042961.14	novel	4778	22	NA	NA	42374	-467	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAAAGTACACCCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	7237284	7237010	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_7237000_7237300
ONT_simulated_read_6503522	chr11	-	431	2	ISM	ENSMUSG00000056962.12	ENST00000585429.1	1075	5	-97	4886	96	-4886	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGATGAAGTACTACATC	NA	NA	NA	NA	NA	NA	NA	NA	116734116	116733341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_116733547_116733890
ONT_simulated_read_6504428	chr1	-	1267	8	ISM	ENSMUSG00000026425.16	ENST00000612199.4	3075	10	88766	1281	88174	8	internal_fragment	TRUE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTTATAAGAACATCAGT	NA	NA	NA	NA	NA	NA	NA	NA	131364568	131272071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412
ONT_simulated_read_650883	chr11	-	280	3	ISM	ENSMUSG00000020462.15	ENSMUST00000020754.10	1664	10	21465	1000	21465	-1000	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAGAAGAGAGATAAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	29175944	29172531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_29172584_29172743_29172884_29175856
ONT_simulated_read_6511572	chr10	-	1921	1	NIC	ENSMUSG00000060002.15	novel	4863	9	NA	NA	28381	-800	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTTAAAATTATTTTAGC	NA	NA	NA	NA	NA	NA	NA	NA	88311399	88309478	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_88309500_88311400
ONT_simulated_read_651499	chr5	-	1994	1	ISM	ENSMUSG00000029616.10	ENSMUST00000130451.2	5204	3	6956	2733	6946	1199	mono-exon	FALSE	NA	NA	NA	NA	NA	328	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCTTAGCTGTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	121583613	121581619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_121581600_121583600
ONT_simulated_read_6515453	chr11	-	305	3	ISM	ENSMUSG00000020774.10	ENSMUST00000021119.9	1530	6	11016	556	11016	-556	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTACCCAGTGTTTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	73204444	73196373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_73196460_73199534_73199645_73204335
ONT_simulated_read_6520277	chr3	+	2649	1	ISM	ENSMUSG00000050947.10	ENSMUST00000050909.7	5030	2	1766	1027	1743	-1027	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTGGAGCCTTTGGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	108095416	108098065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_108095400_108098100
ONT_simulated_read_652214	chr16	+	611	5	FSM	ENSMUSG00000068617.6	ENST00000433756.1	659	5	49	-1	0	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	1256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTGAGTAAGTACAAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	14724500	14742019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_14724677_14735506_14735612_14738158_14738311_14738644_14738750_14741946
ONT_simulated_read_652332	chr10	+	1173	6	NNC	ENSMUSG00000054452.11	novel	1411	7	NA	NA	1724	-61	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCGCTGTACTGAGGATG	NA	NA	NA	NA	NA	NA	NA	NA	81397051	81402135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_+_81397151_81399928_81399993_81400506_81400552_81400681_81400745_81401125_81401201_81401308
ONT_simulated_read_6524099	chr1	+	1595	1	FSM	ENSMUSG00000102194.2	ENSMUST00000191822.2	2539	1	0	944	0	-944	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGTTCTTCTTATGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	179848626	179850221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_179848600_179850200
ONT_simulated_read_6524509	chrX	-	259	1	ISM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	14486	1460	14486	-1460	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAGAGTAAAATTGCATGC	NA	NA	NA	NA	NA	NA	NA	NA	158906923	158906664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_158906700_158906900
ONT_simulated_read_65262	chr13	-	539	3	ISM	ENSMUSG00000021660.15	ENSMUST00000134542.2	780	5	3108	-45	3108	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	2007	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	NA	NA	NA	NA	NA	NA	NA	98449776	98446404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_98446710_98447488_98447546_98449599
ONT_simulated_read_6526868	chr14	-	454	4	ISM	ENSMUSG00000017485.12	ENSMUST00000017629.12	10335	36	51776	14727	51776	-14727	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAACTAATGCGAAGAAA	NA	NA	NA	NA	NA	NA	NA	NA	6052808	6049027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_6049061_6049277_6049423_6051231_6051427_6052727
ONT_simulated_read_6529098	chr3	-	296	1	FSM	ENSMUSG00000097790.2	ENSMUST00000181423.2	219	1	0	-77	0	77	mono-exon	FALSE	NA	NA	NA	NA	NA	178	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGAATATGTGGGCTAAG	NA	NA	NA	NA	NA	NA	NA	NA	14867634	14867338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_14867300_14867600
ONT_simulated_read_6530376	chr9	-	274	3	ISM	ENSMUSG00000070319.7	ENSMUST00000004206.10	1101	11	2433	839	2433	-839	internal_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTGCAGGCCGCCCAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	20807486	20806483	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_20806493_20807123_20807314_20807411
ONT_simulated_read_6531853	chr8	+	328	3	NIC	ENSMUSG00000015013.10	novel	1659	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTAGGAAAGCAAGGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	123338384	123341153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_+_123338433_123339804_123339978_123341046
ONT_simulated_read_6532019	chr9	+	1254	7	ISM	ENSMUSG00000032342.14	ENST00000415954.6	2072	12	-157	15903	5	-15903	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCCTCGAGACACACTT	NA	NA	NA	NA	NA	NA	NA	NA	78355494	78365242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_78355793_78356700_78356901_78356999_78357118_78360045_78360336_78364491_78364605_78364697_78364889_78365198
ONT_simulated_read_6537638	chr7	-	1353	11	ISM	ENSMUSG00000089832.9	ENSMUST00000003857.7	2358	18	1566	1207	1566	-1207	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGACCCCGACGTTACCT	NA	NA	NA	NA	NA	NA	NA	NA	27053878	27042764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796
ONT_simulated_read_6537924	chr11	+	1148	4	ISM	ENSMUSG00000006127.10	ENST00000320345.10	2469	12	15290	151	15290	-151	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGAGGAACTAGGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	75537671	75539358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_75537750_75538018_75538103_75538227_75538333_75538477
ONT_simulated_read_6537968	chr16	-	219	3	ISM	ENSMUSG00000049871.15	ENST00000359128.10	3276	18	17455	405	17455	-405	internal_fragment	FALSE	canonical	NA	NA	NA	NA	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCTGAGAACCACGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	3766850	3765721	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_3765774_3766123_3766208_3766767
ONT_simulated_read_6542595	chr5	-	628	3	ISM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	1401	375	1359	110	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1669	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGAGTCATTCTGTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	117424289	117421093	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_117421531_117423785_117423887_117424199
ONT_simulated_read_6545405	chr11	-	687	1	ISM	ENSMUSG00000020526.13	ENSMUST00000103195.5	998	5	4730	0	4730	0	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTTCCCTTAGTAAAC	NA	NA	NA	NA	NA	NA	NA	NA	84802462	84801775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_84801800_84802500
ONT_simulated_read_654557	chr11	+	938	9	ISM	ENSMUSG00000019312.11	ENST00000394204.1	1523	13	1074	0	1074	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCGCACAAGCTACTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	98342667	98345831	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_98342746_98342944_98343095_98344006_98344118_98344320_98344420_98344618_98344700_98344797_98344915_98345046_98345108_98345408_98345503_98345684
ONT_simulated_read_6546409	chr5	-	2500	1	ISM	ENSMUSG00000036555.15	ENSMUST00000041783.14	6037	23	36926	1126	28078	-1126	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAGGAGGCCCAGGTATG	NA	NA	NA	NA	NA	NA	NA	NA	140651207	140648707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_140648700_140651200
ONT_simulated_read_6550282	chr14	+	762	4	NNC	ENSMUSG00000021916.17	novel	1498	10	NA	NA	8882	-100	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTAACTGCATCTAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	30732288	30733847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr14_+_30732367_30732820_30732988_30733079_30733191_30733441
ONT_simulated_read_6551025	chr15	-	1726	1	NIC	ENSMUSG00000089837.10	novel	1453	9	NA	NA	5288	-37549	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTTAGTTTTCCCTGCAA	NA	NA	NA	NA	NA	NA	NA	NA	79713150	79711424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_79711400_79713200
ONT_simulated_read_6551873	chr19	-	355	3	ISM	ENSMUSG00000024680.13	ENST00000617306.1	636	6	4645	29	4633	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1049	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCAGGGGACCAGGACAA	NA	NA	NA	NA	NA	NA	NA	NA	11596374	11594836	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_11594936_11595779_11595879_11596217
ONT_simulated_read_6552210	chr15	-	1336	8	ISM	ENSMUSG00000054115.13	ENSMUST00000096482.10	3118	10	12379	1317	11720	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTCATGGTGTTTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	9128073	9113389	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_9113956_9116947_9117056_9117177_9117230_9121638_9121770_9122323_9122423_9123956_9124092_9125146_9125291_9127972
ONT_simulated_read_65549	chr5	+	2017	4	ISM	ENSMUSG00000029622.17	ENSMUST00000085679.13	3105	10	11676	235	11579	-235	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	2451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTAGGTTCAGGACTGG	NA	NA	NA	NA	NA	NA	NA	NA	145062700	145066274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_145062777_145063536_145063743_145064445_145064537_145064630
ONT_simulated_read_6556398	chrX	+	273	1	FSM	ENSMUSG00000082551.2	ENSMUST00000121699.2	273	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAAAGGTGGGAAGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	74749014	74749287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_74749000_74749300
ONT_simulated_read_6559940	chr13	+	617	6	ISM	ENSMUSG00000038683.17	ENSMUST00000046951.10	1722	10	243	3740	243	-3740	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGTGGATGTCTATCGG	NA	NA	NA	NA	NA	NA	NA	NA	41154741	41162751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694
ONT_simulated_read_6560559	chr9	-	1253	5	ISM	ENSMUSG00000025241.17	ENST00000535325.5	4279	15	22	37076	22	-37076	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCCAGGCAGCAGGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	123668040	123658737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_123659545_123660351_123660443_123662162_123662307_123663857_123663965_123667936
ONT_simulated_read_6564098	chr7	+	1001	9	ISM	ENSMUSG00000042055.14	ENSMUST00000084519.7	4550	29	14706	15316	14706	-15316	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGGCCAAGTTTATCAT	NA	NA	NA	NA	NA	NA	NA	NA	129208292	129222146	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_129208437_129208720_129208822_129209484_129209662_129210565_129210651_129215590_129215698_129218317_129218394_129220349_129220459_129221617_129221743_129222069
ONT_simulated_read_6564826	chr9	+	697	6	NIC	ENSMUSG00000038264.9	novel	3297	14	NA	NA	0	-6162	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGATAAGATCTACTACT	NA	NA	NA	NA	NA	NA	NA	NA	57847395	57863031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_57847612_57860818_57860962_57861807_57861901_57862106_57862195_57862342_57862454_57862985
ONT_simulated_read_6565625	chr19	+	1505	11	ISM	ENSMUSG00000025224.17	ENST00000676939.1	6444	40	93580	21548	93547	-21537	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTGCTGTCCAAGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	46234526	46253396	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_46234660_46240552_46240672_46242425_46242535_46242995_46243057_46244091_46244147_46247542_46247691_46248011_46248236_46249151_46249318_46250059_46250272_46250872_46250972_46253217
ONT_simulated_read_6566693	chr4	-	772	5	ISM	ENSMUSG00000028878.12	ENST00000010299.10	1010	10	8642	-217	8642	217	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCCCGCCCCCGTGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	132641122	132628315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_132628620_132629313_132629416_132631208_132631345_132638002_132638090_132640979
ONT_simulated_read_6567514	chr2	-	531	5	NIC	ENSMUSG00000040174.15	novel	1395	10	NA	NA	449	6	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCTCTGCCATAAACACA	NA	NA	NA	NA	NA	NA	NA	NA	93838458	93826522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93838383
ONT_simulated_read_657021	chr15	+	528	1	ISM	ENSMUSG00000033728.15	ENSMUST00000127208.8	4849	4	5632	902	5539	-902	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAATGCCCACTGGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	76600469	76600997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76600500_76601000
ONT_simulated_read_6570233	chr11	+	640	4	ISM	ENSMUSG00000020897.13	ENSMUST00000021277.6	1950	8	2917	525	2917	-525	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGGAAACTATTCCTAGC	NA	NA	NA	NA	NA	NA	NA	NA	68939394	68941965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_68939471_68939556_68939706_68941127_68941303_68941725
ONT_simulated_read_6572945	chr1	-	780	1	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	50309	5978	45415	1867	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAACCTCTTTCACTGTT	NA	NA	NA	NA	NA	NA	NA	NA	180921460	180920680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_180920700_180921500
ONT_simulated_read_6575940	chr8	-	1339	11	ISM	ENSMUSG00000035770.9	ENSMUST00000041769.8	4627	13	2491	2827	2248	-166	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGGCACATGCTGTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	105167188	105147138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_105147315_105148918_105149036_105149744_105149863_105150217_105150260_105152070_105152131_105152590_105152703_105154677_105154814_105156046_105156141_105157032_105157203_105163994_105164226_105167105
ONT_simulated_read_6577157	chr1	+	258	3	ISM	ENSMUSG00000041426.13	ENSMUST00000044478.7	1830	14	0	60843	0	-60838	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGATCTATCCACAGCTAA	NA	NA	NA	NA	NA	NA	NA	NA	52884204	52899302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_52884304_52892826_52892870_52899186
ONT_simulated_read_6579874	chr12	-	849	2	ISM	ENSMUSG00000020647.11	ENST00000395856.3	6735	20	100790	1610	90790	230	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATTAGTATATTCATTCA	NA	NA	NA	NA	NA	NA	NA	NA	4303710	4298952	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_4299748_4303656
ONT_simulated_read_6579984	chr7	-	1105	1	FSM	ENSMUSG00000070526.3	ENSMUST00000094339.3	2640	1	0	1535	0	-1535	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCATGAGTTGAGAGACC	NA	NA	NA	NA	NA	NA	NA	NA	62114258	62113153	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_62113200_62114300
ONT_simulated_read_6580501	chr11	+	933	1	FSM	ENSMUSG00000058809.9	ENSMUST00000119713.2	1722	1	0	789	0	-789	mono-exon	FALSE	NA	NA	NA	NA	NA	2615	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTTAAAGATATGGCTAT	NA	NA	NA	NA	NA	NA	NA	NA	41389563	41390496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_41389600_41390500
ONT_simulated_read_6581051	chr6	-	119	1	ISM	ENSMUSG00000029735.18	ENSMUST00000067888.14	2671	9	319414	1745	177094	-472	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTACCTGCCCACTGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	43323798	43323679	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_43323700_43323800
ONT_simulated_read_6581457	chr11	+	1281	8	ISM	ENSMUSG00000025156.18	ENSMUST00000172809.2	2000	14	2257	5	2257	0	intron_retention	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCCCCAAGGCTCCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	120677597	120679923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287
ONT_simulated_read_6586481	chr16	-	679	1	ISM	ENSMUSG00000022749.9	ENST00000344949.9	3577	18	60984	863	48028	-375	mono-exon	FALSE	NA	NA	NA	NA	NA	323	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAGTTGCTAAGGAACAG	NA	NA	NA	NA	NA	NA	NA	NA	56990763	56990084	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_56990100_56990800
ONT_simulated_read_658768	chr17	+	313	3	ISM	ENSMUSG00000045761.17	ENSMUST00000153445.9	3301	20	32503	414	32503	-414	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTACTTCCTGAACAAAATGA	NA	NA	NA	NA	NA	NA	NA	NA	72024302	72036249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_72024462_72031966_72032054_72036182
ONT_simulated_read_6588490	chr4	-	955	10	ISM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	168	92	22	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGGTCTCCATCCACAA	NA	NA	NA	NA	NA	NA	NA	NA	129494273	129485844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201
ONT_simulated_read_6589583	chr7	-	1633	8	ISM	ENSMUSG00000030557.18	ENST00000558812.5	2174	10	104492	170	104440	-170	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	119	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGCGGTGACTGTAGTT	NA	NA	NA	NA	NA	NA	NA	NA	66918149	66884222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_66884977_66886271_66886399_66890061_66890189_66894268_66894293_66901404_66901593_66914612_66914673_66915690_66915911_66918016
ONT_simulated_read_6593724	chr19	-	1024	8	ISM	ENSMUSG00000024781.17	ENSMUST00000178114.2	2965	10	3934	1728	3934	-1728	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTTTGGATGCCCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	34500940	34471445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_34471614_34472459_34472532_34477496_34477569_34478902_34479050_34484408_34484546_34486388_34486499_34488222_34488422_34500821
ONT_simulated_read_6594138	chr2	-	877	1	ISM	ENSMUSG00000074643.13	ENSMUST00000109607.10	3441	16	38296	922	38258	588	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCTTTACCAGCTCAACA	NA	NA	NA	NA	NA	NA	NA	NA	155915563	155914686	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155914700_155915600
ONT_simulated_read_6594876	chr3	-	3066	1	Genic_Genomic	ENSMUSG00000028141.13	novel	NA	NA	NA	NA	1899	1563	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCCGTATGTGAGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	94341975	94338909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr3_-_94338900_94342000
ONT_simulated_read_6598279	chr11	-	2288	11	ISM	ENSMUSG00000069910.3	ENSMUST00000093191.3	2505	12	2747	58	2747	-58	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTTATGACTCAAACATC	NA	NA	NA	NA	NA	NA	NA	NA	34721721	34700074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_34700670_34704152_34704502_34709949_34710138_34710604_34710715_34711716_34711858_34713007_34713119_34713200_34713300_34713386_34713537_34714156_34714355_34716189_34716367_34721551
ONT_simulated_read_6601099	chr3	+	2102	8	ISM	ENSMUSG00000028034.16	ENST00000370768.7	5878	21	10770	3121	10770	935	internal_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATCAGAGTGACAAATTG	NA	NA	NA	NA	NA	NA	NA	NA	151926999	151939344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
ONT_simulated_read_6601346	chr18	+	1443	11	ISM	ENSMUSG00000024404.8	ENST00000581585.5	1874	13	7941	141	7914	-124	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGACAGTGCTGCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	12269752	12288449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_12269896_12269984_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
ONT_simulated_read_6604350	chr2	-	290	1	ISM	ENSMUSG00000026831.17	ENSMUST00000086370.11	812	3	3898	144	3898	-144	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCACTGCCTTCTCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	28352446	28352156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_28352200_28352400
ONT_simulated_read_660475	chr3	-	674	1	ISM	ENSMUSG00000040943.13	ENSMUST00000098603.8	9179	11	76220	3818	76198	-3658	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGCCTCCAGATCACCAT	NA	NA	NA	NA	NA	NA	NA	NA	133173931	133173257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_133173300_133173900
ONT_simulated_read_6606814	chr10	-	2043	8	ISM	ENSMUSG00000055531.13	ENSMUST00000069168.13	6526	10	10806	4121	10764	245	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTTTTCTAGCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	117202069	117184698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985
ONT_simulated_read_661194	chr14	+	1119	5	ISM	ENSMUSG00000022175.10	ENSMUST00000022782.10	4228	7	0	3462	0	-3462	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGATGGCCGGAGGCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	54701593	54705492	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_54702069_54702360_54702406_54703030_54703167_54704916_54705108_54705220
ONT_simulated_read_6612342	chr6	-	744	1	NIC	ENSMUSG00000042541.11	novel	1472	3	NA	NA	20166	-455	mono-exon	FALSE	NA	NA	NA	NA	NA	949	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAGCTAATATGTAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	6558492	6557748	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_6557700_6558500
ONT_simulated_read_6613150	chr10	+	981	8	ISM	ENSMUSG00000020250.12	ENSMUST00000219962.3	2297	15	1298	12638	204	-12638	internal_fragment	TRUE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAACAGCGAGGAGACCAT	NA	NA	NA	NA	NA	NA	NA	NA	82696338	82719801	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_82696465_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747
ONT_simulated_read_6613712	chr4	+	707	5	FSM	ENSMUSG00000028478.19	ENST00000466396.5	676	5	-31	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGAAACACTACGTCTAC	NA	NA	NA	NA	NA	NA	NA	NA	44012685	44032582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_44013009_44025448_44025561_44030214_44030269_44031399_44031436_44032400
ONT_simulated_read_6613770	chr11	-	279	1	ISM	ENSMUSG00000020427.12	ENSMUST00000020702.11	2421	5	6391	1142	6391	458	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCGTGTACTCCAGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	7157506	7157227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_7157200_7157500
ONT_simulated_read_6614750	chr17	-	2164	5	ISM	ENSMUSG00000007670.11	ENSMUST00000007814.10	3978	18	7552	234	7552	119	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACAGGCCCCTCCTGCCC	NA	NA	NA	NA	NA	NA	NA	NA	57330936	57328284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_57329971_57330058_57330137_57330212_57330414_57330504_57330594_57330826
ONT_simulated_read_6616054	chr16	+	425	4	ISM	ENSMUSG00000004070.16	ENSMUST00000004172.15	1730	6	0	2058	0	-1561	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCTTATATTTCCCCACG	NA	NA	NA	NA	NA	NA	NA	NA	4544226	4582548	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_4544336_4580422_4580542_4581592_4581711_4582469
ONT_simulated_read_6616231	chr3	+	955	10	ISM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	258	6754	258	-6754	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCCAATGGCTACAACTG	NA	NA	NA	NA	NA	NA	NA	NA	32762913	32774368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334
ONT_simulated_read_6619020	chr4	+	568	1	ISM	ENSMUSG00000028517.9	ENSMUST00000064139.8	3159	6	0	74850	0	-74850	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGCGGGTGCTGCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	105014543	105015111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_105014500_105015100
ONT_simulated_read_6619458	chr13	-	278	1	ISM	ENSMUSG00000061474.12	ENSMUST00000109333.8	701	4	8427	0	8425	0	mono-exon	FALSE	NA	NA	NA	NA	NA	385	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	100872740	100872462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_100872500_100872700
ONT_simulated_read_6620587	chr7	-	506	1	ISM	ENSMUSG00000010476.15	ENSMUST00000169486.9	4994	16	118056	2211	71149	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGAGGTATGAGCCATTA	NA	NA	NA	NA	NA	NA	NA	NA	136798118	136797612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_136797600_136798100
ONT_simulated_read_6622939	chr17	-	210	1	FSM	ENSMUSG00000117962.2	ENSMUST00000235315.2	414	1	0	204	0	-204	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAGTTGCAGGAAGACGA	NA	NA	NA	NA	NA	NA	NA	NA	30615007	30614797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_30614800_30615000
ONT_simulated_read_6623749	chr1	+	1142	3	ISM	ENSMUSG00000066877.12	ENSMUST00000086421.9	2772	5	87818	1173	87818	-1173	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAGCCATTGGCCCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	43572728	43608502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_43572954_43593020_43593743_43608307
ONT_simulated_read_6624034	chr5	+	442	1	FSM	ENSMUSG00000098449.2	ENSMUST00000185173.2	652	1	0	210	0	-210	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGATGTGTTTGCTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	76452722	76453164	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_76452700_76453200
ONT_simulated_read_6624240	chr1	-	1214	4	ISM	ENSMUSG00000033845.14	ENSMUST00000130201.8	1894	5	1604	543	1604	-538	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	106	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTGCTCAGCCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	4854329	4843971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_4844740_4847747_4847872_4852790_4852957_4854173
ONT_simulated_read_6624983	chr3	-	2120	1	ISM	ENSMUSG00000050315.15	ENSMUST00000106426.8	7063	5	121508	35950	2464	-5866	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGTTCTCAGCCAAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	122908237	122906117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_122906100_122908200
ONT_simulated_read_6625115	chr2	+	693	6	ISM	ENSMUSG00000019715.15	ENSMUST00000019859.9	4030	16	97	20222	97	-18475	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGAGGAAGGTCAGGTCC	NA	NA	NA	NA	NA	NA	NA	NA	29825534	29830161	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093
ONT_simulated_read_6626910	chr7	-	454	1	ISM	ENSMUSG00000002981.11	ENSMUST00000055242.11	4143	14	31094	1915	31094	-1915	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCGTCTGTTCCTATGTGT	NA	NA	NA	NA	NA	NA	NA	NA	19367864	19367410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_19367400_19367900
ONT_simulated_read_6627014	chr1	+	459	4	ISM	ENSMUSG00000026596.14	ENST00000344730.7	4426	13	14	18539	14	-11531	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATCACTCCAGTTAATAG	NA	NA	NA	NA	NA	NA	NA	NA	156443492	156452946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_156443629_156448408_156448472_156450054_156450226_156452857
ONT_simulated_read_6631541	chr11	-	893	1	ISM	ENSMUSG00000025575.15	ENSMUST00000106288.8	2873	5	10999	872	7741	483	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACCTGCCCACACTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	118298879	118297986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_118298000_118298900
ONT_simulated_read_6631682	chrX	-	315	2	ISM	ENSMUSG00000031099.17	ENST00000371123.5	3959	24	81236	545	81163	-285	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATATTTTATATATTTT	NA	NA	NA	NA	NA	NA	NA	NA	46900146	46898794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_46898998_46900034
ONT_simulated_read_6632703	chr3	-	2480	1	NIC	ENSMUSG00000028165.10	novel	3361	3	NA	NA	14516	0	mono-exon	FALSE	NA	NA	NA	NA	NA	393	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTTTTCTTTTTTATGT	NA	NA	NA	NA	NA	NA	NA	NA	135114652	135112172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_135112200_135114700
ONT_simulated_read_66361	chr15	-	476	3	ISM	ENSMUSG00000022629.18	ENST00000544797.6	4883	33	58969	1189	58969	-1189	internal_fragment	TRUE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGTGTCCTCCTGTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	90823292	90819837	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_90820038_90821363_90821535_90823187
ONT_simulated_read_6640348	chr3	-	1215	5	ISM	ENSMUSG00000001052.16	ENSMUST00000001079.15	5128	24	19459	27026	19276	-25893	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGGTGGCAAAGCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	129835097	129803433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_129803544_129805440_129805522_129814186_129814292_129827479_129827624_129834322
ONT_simulated_read_6642835	chr7	-	1008	6	ISM	ENSMUSG00000005611.16	ENSMUST00000125758.8	5953	20	19670	53079	19670	-50301	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCTGAACTGAGTGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	110525724	110520557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_110520600_110522667_110523280_110523518_110523567_110523741_110523795_110524461_110524540_110525549
ONT_simulated_read_6645134	chr17	+	744	4	ISM	ENSMUSG00000024392.18	ENST00000375976.8	3482	24	4118	5327	4118	-5319	internal_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAGCACCGCCACCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	35359206	35360962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35359466_35359797_35359928_35360401_35360600_35360805
ONT_simulated_read_6647292	chr10	+	1181	8	ISM	ENSMUSG00000019916.15	ENSMUST00000105466.3	2918	15	0	20024	0	-19729	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAGATTGTCAAAGACTTA	NA	NA	NA	NA	NA	NA	NA	NA	59159189	59188049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904
ONT_simulated_read_6648241	chr11	-	882	6	ISM	ENSMUSG00000017210.15	ENST00000356271.7	2960	24	21673	-185	21673	-99	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGCCACAGTGTGTATATA	NA	NA	NA	NA	NA	NA	NA	NA	98598077	98595515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943
ONT_simulated_read_6649610	chr19	-	1034	1	ISM	ENSMUSG00000024781.17	ENSMUST00000178114.2	2965	10	33302	821	33302	-821	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGAAAGCGAGACTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	34471572	34470538	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_34470500_34471600
ONT_simulated_read_6653162	chr6	-	384	1	ISM	ENSMUSG00000000441.18	ENSMUST00000112949.8	2946	17	56984	28	56984	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTAATGGCTACTGACTC	NA	NA	NA	NA	NA	NA	NA	NA	115595941	115595557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_115595600_115595900
ONT_simulated_read_6653695	chr2	+	411	3	ISM	ENSMUSG00000079442.13	ENSMUST00000179989.2	2826	5	6651	1886	6651	-1886	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGGCCAAGTAGTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	32484287	32487201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_32484415_32485705_32485814_32487025
ONT_simulated_read_6655059	chr4	+	482	4	ISM	ENSMUSG00000028552.14	ENSMUST00000030281.12	2980	13	194	23370	194	-22269	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAAGATCTGGAAACTGA	NA	NA	NA	NA	NA	NA	NA	NA	109200449	109220393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_109200554_109218359_109218522_109218866_109219065_109220375
ONT_simulated_read_6655263	chr13	+	1720	16	ISM	ENSMUSG00000021595.19	ENSMUST00000109699.11	2834	19	930	1079	702	-791	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGATTCTGCGTAAGTAT	NA	NA	NA	NA	NA	NA	NA	NA	69761064	69781374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_69761162_69763530_69763637_69765524_69765597_69766224_69766310_69767564_69767758_69769723_69769799_69771281_69771413_69774596_69774671_69775154_69775286_69775678_69775776_69777653_69777836_69778120_69778214_69778746_69778883_69779353_69779435_69779650_69779790_69781346
ONT_simulated_read_6656170	chr15	-	448	1	ISM	ENSMUSG00000036698.12	ENSMUST00000044113.12	13800	19	77938	10706	77822	-138	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACACCTGATTCTCACTG	NA	NA	NA	NA	NA	NA	NA	NA	72978846	72978398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_72978400_72978800
ONT_simulated_read_6657515	chr4	-	670	5	ISM	ENSMUSG00000028337.15	ENSMUST00000030021.14	4112	13	23035	2195	23035	-228	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTCCTCCACCCTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	46543405	46539131	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_46539268_46540417_46540690_46541892_46541984_46542234_46542348_46543347
ONT_simulated_read_6663335	chr4	-	1636	1	ISM	ENSMUSG00000047719.3	ENSMUST00000051633.3	2992	2	8157	484	8157	-484	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAACCACCTTGAGTTAGC	NA	NA	NA	NA	NA	NA	NA	NA	148521071	148519435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_148519400_148521100
ONT_simulated_read_6667427	chr2	+	1607	6	NIC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	2712	364	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCACTCATTGAAACCCC	NA	NA	NA	NA	NA	NA	NA	NA	75492832	75496829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_+_75492921_75493004_75493101_75493914_75494059_75495371_75495495_75495577_75495646_75495741
ONT_simulated_read_6671141	chr9	+	574	8	ISM	ENSMUSG00000032301.14	ENSMUST00000034848.14	1165	9	100	1191	100	-974	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGAAGGCGAAATGACTC	NA	NA	NA	NA	NA	NA	NA	NA	54858173	54864123	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094
ONT_simulated_read_6671662	chr2	-	649	1	ISM	ENSMUSG00000026792.17	ENSMUST00000028132.14	3981	25	34381	1010	32717	550	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCTAGGTCCATGAGAACT	NA	NA	NA	NA	NA	NA	NA	NA	32816886	32816237	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_32816200_32816900
ONT_simulated_read_6675457	chr11	-	507	1	ISM	ENSMUSG00000044795.13	ENSMUST00000108660.8	1034	4	1564	0	1564	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTGGAAATTAGCATCAC	NA	NA	NA	NA	NA	NA	NA	NA	69284595	69284088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69284100_69284600
ONT_simulated_read_6679169	chr9	-	386	1	Genic_Genomic	ENSMUSG00000079427.11	novel	NA	NA	NA	NA	30605	5	mono-exon	FALSE	NA	NA	NA	NA	NA	167	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAATAGAAATTATTAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	88571035	88570649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr9_-_88570600_88571000
ONT_simulated_read_6681899	chr12	+	560	5	ISM	ENSMUSG00000012076.9	ENSMUST00000059250.8	2609	10	80	9627	80	-9627	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATACAGTCCAGAGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	55883188	55906894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_55883431_55888355_55888447_55891180_55891309_55892068_55892149_55906875
ONT_simulated_read_6685254	chr5	+	553	1	NIC	ENSMUSG00000040532.15	novel	972	6	NA	NA	51	-1932	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGCAAAACCAACTTCAACT	NA	NA	NA	NA	NA	NA	NA	NA	135038360	135038913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_+_135038400_135038900
ONT_simulated_read_668895	chr13	-	1271	6	ISM	ENSMUSG00000060147.16	ENSMUST00000017188.14	1504	8	4349	-9	4349	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTCTGCCTCACTGG	NA	NA	NA	NA	NA	NA	NA	NA	34115630	34101900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454
ONT_simulated_read_6689689	chr3	-	906	1	ISM	ENSMUSG00000028127.11	ENSMUST00000197383.5	3156	19	54867	620	54867	-487	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTCTCATCAGAAATGTG	NA	NA	NA	NA	NA	NA	NA	NA	121553948	121553042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_121553000_121553900
ONT_simulated_read_6691257	chr19	-	534	4	ISM	ENSMUSG00000024958.14	ENST00000377702.8	1355	6	1103	396	1085	-308	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGGGGCCAGCCAGACGA	NA	NA	NA	NA	NA	NA	NA	NA	6917122	6915837	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6915898_6916123_6916243_6916379_6916509_6916896
ONT_simulated_read_6691467	chr2	-	490	1	ISM	ENSMUSG00000046229.11	ENSMUST00000079125.8	803	2	412	0	412	0	mono-exon	FALSE	NA	NA	NA	NA	NA	372	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGCTGTGTCTTGCGTT	NA	NA	NA	NA	NA	NA	NA	NA	156154255	156153765	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_156153800_156154300
ONT_simulated_read_6692297	chr9	-	2040	1	ISM	ENSMUSG00000097073.8	ENSMUST00000180723.8	3177	5	1038	841	1038	-841	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGTTCGAGGCCAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	88480258	88478218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_88478200_88480300
ONT_simulated_read_6693069	chr13	+	1701	10	ISM	ENSMUSG00000005320.10	ENSMUST00000005452.6	3324	18	0	7247	0	-7247	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGCTTTGGGAATTCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	55300452	55309325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_55300741_55303250_55303385_55304043_55304308_55304398_55304480_55304586_55304754_55306906_55307031_55307735_55307927_55308061_55308201_55308928_55309123_55309206
ONT_simulated_read_6693452	chr9	+	175	1	ISM	ENSMUSG00000036138.17	ENSMUST00000039784.12	1762	12	0	8831	0	-8565	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTGCACCCAGAACCTAA	NA	NA	NA	NA	NA	NA	NA	NA	119170359	119170534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_119170400_119170500
ONT_simulated_read_6693745	chr18	+	552	5	ISM	ENSMUSG00000073563.4	ENST00000521364.5	2372	12	36715	678	36497	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTTTATGGAAGCTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	54065315	54086545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_54065412_54066521_54066618_54081119_54081227_54081716_54081741_54086316
ONT_simulated_read_669408	chrX	+	717	1	FSM	ENSMUSG00000079297.5	ENSMUST00000112099.2	1350	1	0	633	0	-633	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTCAACAAACCTGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	32943123	32943840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_32943100_32943800
ONT_simulated_read_6695668	chr3	+	3137	22	ISM	ENSMUSG00000028059.17	ENSMUST00000176500.8	4492	23	0	1784	0	-595	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCGAGGATCGACTACAGG	NA	NA	NA	NA	NA	NA	NA	NA	88523449	88553575	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_88523764_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483
ONT_simulated_read_6700863	chr11	-	1093	5	ISM	ENSMUSG00000019173.12	ENSMUST00000019317.12	1967	6	18046	737	18046	-737	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTCCTCATCCGTGGGG	NA	NA	NA	NA	NA	NA	NA	NA	100610995	100606573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100606989_100607583_100607732_100608667_100608791_100609256_100609409_100610740
ONT_simulated_read_6702476	chr11	-	2315	4	ISM	ENSMUSG00000020361.14	ENSMUST00000020630.8	4618	19	35316	77	35316	-77	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCTTACACTAAGAAAAACA	NA	NA	NA	NA	NA	NA	NA	NA	53155968	53150717	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_53152643_53153090_53153253_53153706_53153827_53155860
ONT_simulated_read_6709671	chr9	+	437	1	FSM	ENSMUSG00000079884.7	ENSMUST00000182663.3	604	1	0	167	0	-167	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAGGAGTACATGGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	33639542	33639979	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_33639500_33640000
ONT_simulated_read_6713315	chr15	-	281	1	FSM	ENSMUSG00000092325.3	ENSMUST00000172604.3	619	1	0	338	0	-338	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTAATGAAACACATTTTA	NA	NA	NA	NA	NA	NA	NA	NA	81559079	81558798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_81558800_81559100
ONT_simulated_read_671563	chr17	-	1908	17	ISM	ENSMUSG00000024066.10	ENSMUST00000024866.6	4600	36	15335	22899	15257	-20451	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAATTGTAGTCCGAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	74241842	74213788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_74213824_74214615_74214741_74216241_74216339_74217160_74217281_74219411_74219536_74220865_74221036_74222671_74222756_74223782_74223958_74225367_74225553_74227387_74227498_74228261_74228356_74229407_74229560_74230037_74230131_74231909_74232052_74233168_74233256_74233542_74233612_74241796
ONT_simulated_read_671885	chr19	+	616	6	ISM	ENSMUSG00000024983.11	ENSMUST00000225529.2	1244	8	38	78420	-17	-78420	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTATACATCATCCCGC	NA	NA	NA	NA	NA	NA	NA	NA	55304764	55487013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942
ONT_simulated_read_6721277	chr6	-	395	3	ISM	ENSMUSG00000029759.10	ENST00000427422.5	706	5	9333	91	9333	-91	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTCAGGGCAGCACCGT	NA	NA	NA	NA	NA	NA	NA	NA	5236996	5221653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_5221723_5232323_5232525_5236871
ONT_simulated_read_6723272	chr6	+	2422	16	NIC	ENSMUSG00000030235.18	novel	2471	16	NA	NA	0	-76	combination_of_known_junctions	TRUE	canonical	NA	NA	NA	NA	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAGACATGCGCTGCAA	NA	NA	NA	NA	NA	NA	NA	NA	141470124	141515181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_+_141470276_141470397_141470469_141477179_141477333_141478367_141478510_141484905_141485039_141485775_141485910_141487817_141487965_141490458_141490558_141492402_141492649_141493495_141493661_141500717_141500914_141505466_141505633_141508751_141508937_141510240_141510306_141513179_141513399_141515031
ONT_simulated_read_6723737	chr1	+	1405	10	ISM	ENSMUSG00000026027.14	ENSMUST00000027185.11	2960	12	0	2667	0	1536	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGGCTCCATACGCCATC	NA	NA	NA	NA	NA	NA	NA	NA	59012680	59032207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171_59030296_59031362_59031535_59031809_59031915_59032051
ONT_simulated_read_6724273	chr11	-	1644	3	ISM	ENSMUSG00000020925.17	ENSMUST00000164506.3	2316	5	7426	332	7426	-332	3prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCAAGAGAACAGTTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	102581134	102575845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_102577323_102579626_102579688_102581028
ONT_simulated_read_672603	chr8	-	863	3	ISM	ENSMUSG00000031843.3	ENSMUST00000034303.3	1068	5	7272	0	7272	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTTGAAGTAATTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	118521410	118518383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_118519058_118519417_118519516_118521319
ONT_simulated_read_6728820	chr7	-	357	1	ISM	ENSMUSG00000030557.18	ENSMUST00000156690.8	5538	12	140604	735	140587	20	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTAAGTTGCACTGGACA	NA	NA	NA	NA	NA	NA	NA	NA	66882002	66881645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_66881600_66882000
ONT_simulated_read_6729459	chr3	-	395	4	ISM	ENSMUSG00000028149.13	ENSMUST00000196280.5	3598	15	24569	57905	24502	-43045	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCGCTGTGCGGTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	138756329	138689571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_138689630_138721306_138721433_138727573_138727697_138756241
ONT_simulated_read_6729494	chr11	-	381	1	NIC	ENSMUSG00000034341.18	novel	1826	8	NA	NA	7337	35	mono-exon	FALSE	NA	NA	NA	NA	NA	292	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCAGCCCCTTCAGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	115970423	115970042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_115970000_115970400
ONT_simulated_read_6736190	chr11	-	2202	4	ISM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	24821	278	24791	-278	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGACCTACCAGATTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	94187993	94182242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_94183859_94183963_94184105_94186745_94186907_94187709
ONT_simulated_read_6738916	chr12	-	453	2	ISM	ENSMUSG00000076617.10	ENST00000637539.2	1393	5	1445	-1	1445	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTTGTGGGGCTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	113384882	113382569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_113382689_113384548
ONT_simulated_read_673955	chr11	+	612	1	FSM	ENSMUSG00000078151.4	ENSMUST00000144172.2	876	1	0	264	0	-264	mono-exon	FALSE	NA	NA	NA	NA	NA	204	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTAAGAGGTGGCATGA	NA	NA	NA	NA	NA	NA	NA	NA	54291917	54292529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_54291900_54292500
ONT_simulated_read_6739714	chr3	-	248	1	FSM	ENSMUSG00000106486.2	ENSMUST00000198267.2	1137	1	0	889	0	-889	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATAGACTACCTCCACCTC	NA	NA	NA	NA	NA	NA	NA	NA	98098418	98098170	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_98098200_98098400
ONT_simulated_read_6743421	chr6	+	242	2	ISM	ENSMUSG00000000693.11	ENSMUST00000000707.9	4098	14	4227	4543	2921	-2653	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCACAGTGTGGCATGT	NA	NA	NA	NA	NA	NA	NA	NA	83015380	83025000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_83015591_83024968
ONT_simulated_read_6747307	chr6	-	1193	5	ISM	ENSMUSG00000023456.17	ENSMUST00000149610.3	802	6	366	-673	366	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	3375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGTCCCAGGCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	124789667	124787548	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583
ONT_simulated_read_6751404	chr13	-	1634	5	ISM	ENSMUSG00000037946.12	ENSMUST00000048716.11	3519	18	25248	-240	25248	240	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAATTTAGAGACCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	49427248	49416345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_49417512_49418114_49418256_49420066_49420208_49421708_49421832_49427185
ONT_simulated_read_6753397	chr9	-	251	1	ISM	ENSMUSG00000032557.14	ENSMUST00000035166.12	2404	12	15486	799	15486	-799	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCGTGTCTGTGGCCTA	NA	NA	NA	NA	NA	NA	NA	NA	103924847	103924596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_103924600_103924800
ONT_simulated_read_6755133	chr9	+	1006	1	ISM	ENSMUSG00000074001.4	ENSMUST00000098272.4	2370	6	0	5122	0	-5122	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTCTGCGCTTCGGCAT	NA	NA	NA	NA	NA	NA	NA	NA	121606756	121607762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_121606800_121607800
ONT_simulated_read_675958	chr17	-	2980	1	ISM	ENSMUSG00000117042.2	ENSMUST00000137459.8	4453	6	78064	800	78064	-800	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGTCCTGAGTACAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	13711062	13708082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_13708100_13711100
ONT_simulated_read_6760402	chr14	-	553	1	FSM	ENSMUSG00000035129.7	ENSMUST00000038304.7	1242	1	0	689	0	-689	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTCTGCCTCAGAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	3938333	3937780	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_3937800_3938300
ONT_simulated_read_6760572	chr6	-	960	6	ISM	ENSMUSG00000039130.19	ENSMUST00000080812.14	1824	10	14969	338	14948	-244	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGAATATTCCGGCAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	30376053	30366716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_30366745_30370263_30370471_30372736_30372950_30373241_30373483_30374763_30374919_30375937
ONT_simulated_read_6761714	chr15	-	1332	8	ISM	ENSMUSG00000023055.11	ENSMUST00000023818.11	2824	15	10703	464	8241	-258	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACCATGCCTGCACCCT	NA	NA	NA	NA	NA	NA	NA	NA	102619910	102615675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_102615982_102616980_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777
ONT_simulated_read_6763894	chr11	-	234	1	ISM	ENSMUSG00000039989.8	ENSMUST00000026665.8	5179	5	3953	4462	3914	-83	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTACCAGGGCGGCCACAA	NA	NA	NA	NA	NA	NA	NA	NA	118973094	118972860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_118972900_118973100
ONT_simulated_read_6765037	chr15	-	263	2	ISM	ENSMUSG00000022449.15	ENSMUST00000155907.2	6886	28	9488	59526	9488	-59526	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAGTTACATTCCAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	94292651	94277740	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_94277845_94292492
ONT_simulated_read_6766275	chr5	+	511	1	FSM	ENSMUSG00000062353.7	ENSMUST00000118533.2	438	1	0	-73	0	73	mono-exon	FALSE	NA	NA	NA	NA	NA	2196	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGACCATGTTATTATTAA	NA	NA	NA	NA	NA	NA	NA	NA	3286430	3286941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_3286400_3286900
ONT_simulated_read_6770266	chr6	-	498	6	ISM	ENSMUSG00000051169.15	ENSMUST00000129047.8	1045	8	369	788	369	-788	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCTCGAAAGGACATCCAG	NA	NA	NA	NA	NA	NA	NA	NA	113395911	113393854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770
ONT_simulated_read_67714	chr1	-	530	1	NIC	ENSMUSG00000026663.7	novel	7246	16	NA	NA	145090	-317	mono-exon	FALSE	NA	NA	NA	NA	NA	330	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGTGCAGTAAAGAGATTT	NA	NA	NA	NA	NA	NA	NA	NA	170537657	170537127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_170537100_170537700
ONT_simulated_read_6773691	chr13	-	1621	7	NNC	ENSMUSG00000021477.10	novel	1971	8	NA	NA	1180	-245	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTACGTATGTTTATACT	NA	NA	NA	NA	NA	NA	NA	NA	64516940	64511272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515925_64516053_64516841
ONT_simulated_read_6776351	chr10	-	1325	11	ISM	ENSMUSG00000061032.10	ENSMUST00000062678.11	1984	13	2045	327	492	-327	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	234	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCGTCCGTCCTATAGGG	NA	NA	NA	NA	NA	NA	NA	NA	78246832	78236546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_78236819_78237683_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78245054_78246799
ONT_simulated_read_6776688	chr8	+	776	6	ISM	ENSMUSG00000031521.6	ENSMUST00000211424.2	1147	9	0	4343	0	-4343	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGTGTTTCCCCAAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	53964761	53972026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950
ONT_simulated_read_6778294	chr18	-	725	1	ISM	ENSMUSG00000024556.5	ENSMUST00000025439.5	2638	16	44630	181	34358	-181	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAAACCCACTTTTATTA	NA	NA	NA	NA	NA	NA	NA	NA	73903879	73903154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_73903200_73903900
ONT_simulated_read_6778968	chr2	-	350	3	ISM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	13413	28927	13413	-28927	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAGAAAGGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	139999071	139990729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_139990835_139996713_139996862_139998974
ONT_simulated_read_6779562	chr5	-	1029	3	ISM	ENSMUSG00000029726.17	ENSMUST00000031740.16	3128	4	1521	688	1521	-688	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGAAGGGCTCGTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	137783404	137780855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_137780984_137781391_137781611_137782722
ONT_simulated_read_67813	chr3	-	1335	1	ISM	ENSMUSG00000008730.18	ENSMUST00000118317.8	7939	16	47128	3286	46640	461	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGATAAACATTGCCTAAG	NA	NA	NA	NA	NA	NA	NA	NA	103651751	103650416	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_103650400_103651800
ONT_simulated_read_6783740	chr18	+	2241	15	ISM	ENSMUSG00000037815.8	ENST00000518825.5	3495	17	-2	3387	-2	-3387	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAAAATTGCGGAGGCGG	NA	NA	NA	NA	NA	NA	NA	NA	35285651	35384263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218
ONT_simulated_read_6787037	chr17	-	499	4	ISM	ENSMUSG00000096549.10	ENSMUST00000113300.8	1110	6	0	1624	0	-1226	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	231	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACTTCTACCACGAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	48003391	48001065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_48001187_48001498_48001637_48002281_48002390_48003259
ONT_simulated_read_6793744	chr2	+	341	3	ISM	ENSMUSG00000037523.14	ENSMUST00000110199.3	3057	7	7829	2752	7829	-2752	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCCCTGAGGACAAACCT	NA	NA	NA	NA	NA	NA	NA	NA	131083853	131087193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_131083970_131085038_131085193_131087122
ONT_simulated_read_6794163	chr18	-	963	1	NIC	ENSMUSG00000097324.9	novel	988	4	NA	NA	13116	-438	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGAACGCCTCCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	61785445	61784482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_61784500_61785400
ONT_simulated_read_6795878	chr12	-	1583	11	ISM	ENSMUSG00000015143.16	ENST00000682331.1	3558	20	76780	808	76468	-43	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTCCTTCTCCACGGCAC	NA	NA	NA	NA	NA	NA	NA	NA	80230397	80215138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_80215255_80215631_80215791_80216956_80217023_80218502_80218650_80219736_80219917_80220853_80220989_80222929_80223071_80223961_80224071_80225075_80225227_80228134_80228283_80230166
ONT_simulated_read_6797858	chrX	+	1725	8	ISM	ENSMUSG00000034311.4	ENSMUST00000048962.4	4983	30	0	61447	0	-61447	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACAGAGCAAGAAAAATCAA	NA	NA	NA	NA	NA	NA	NA	NA	99669342	99709373	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_99670195_99670309_99670425_99677444_99677636_99679289_99679383_99681889_99682057_99682282_99682378_99708341_99708459_99709278
ONT_simulated_read_679938	chr9	+	756	9	ISM	ENSMUSG00000023495.14	ENST00000471622.5	1611	12	370	1358	370	-1358	internal_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGTGACCATCACTGGC	NA	NA	NA	NA	NA	NA	NA	NA	106337593	106339812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_106337629_106337849_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706
ONT_simulated_read_6800429	chr2	+	1436	10	ISM	ENSMUSG00000026796.17	ENSMUST00000028135.15	3714	14	0	3147	0	-3147	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATGCAGAGCTGCTATGA	NA	NA	NA	NA	NA	NA	NA	NA	32766125	32812119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_32766417_32795780_32795912_32799860_32799990_32801352_32801459_32802431_32802600_32809004_32809121_32809507_32809613_32809714_32809878_32810964_32811153_32812080
ONT_simulated_read_6801407	chr17	-	2129	9	ISM	ENSMUSG00000024335.21	ENSMUST00000095347.13	2617	12	2695	0	2695	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGGTATGGGTGGGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	34334768	34331336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641
ONT_simulated_read_6803812	chr9	+	677	4	ISM	ENSMUSG00000031918.17	ENST00000675438.1	1748	10	6938	2263	6938	-1996	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAGTATGATCTCTACTC	NA	NA	NA	NA	NA	NA	NA	NA	13707272	13714834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_13707443_13710445_13710632_13711171_13711379_13714720
ONT_simulated_read_6804310	chr1	+	293	3	ISM	ENSMUSG00000026490.19	ENSMUST00000076687.12	4917	35	0	130639	0	-130639	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGATAAAGTATTCGCCA	NA	NA	NA	NA	NA	NA	NA	NA	179788674	179859092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_179788853_179826926_179827019_179859069
ONT_simulated_read_680546	chr9	-	1421	1	ISM	ENSMUSG00000054792.16	ENSMUST00000068025.13	4530	10	47719	1629	33505	-1627	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTACATCCTTTCCCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	110258043	110256622	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_110256600_110258000
ONT_simulated_read_6807049	chr7	-	463	4	ISM	ENSMUSG00000030541.17	ENSMUST00000107384.10	1745	11	16477	1261	16389	-1048	internal_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGTCTGCCCTGATGG	NA	NA	NA	NA	NA	NA	NA	NA	79748663	79745854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_79745884_79747551_79747704_79747883_79748021_79748518
ONT_simulated_read_6810442	chr6	-	938	1	ISM	ENSMUSG00000036667.15	ENSMUST00000045054.11	5257	9	39773	1376	9105	564	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAATAAGAAAGACTTGAG	NA	NA	NA	NA	NA	NA	NA	NA	42647249	42646311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_42646300_42647200
ONT_simulated_read_6811577	chr5	-	225	1	ISM	ENSMUSG00000025747.13	ENSMUST00000026846.11	3163	7	12503	2063	12503	-2063	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACTCCCCTACCCACCCA	NA	NA	NA	NA	NA	NA	NA	NA	30266112	30265887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_30265900_30266100
ONT_simulated_read_6811918	chrX	+	1384	3	ISM	ENSMUSG00000041115.17	ENST00000675719.1	6022	14	34	21092	0	9542	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCGAGGGCAAGCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	150927267	150987141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_150928176_150985903_150986166_150986927
ONT_simulated_read_681242	chr11	-	400	3	ISM	ENSMUSG00000020899.17	ENSMUST00000021282.12	6373	28	17306	4740	17306	-4740	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCGGACAGGGCCCAGC	NA	NA	NA	NA	NA	NA	NA	NA	68881980	68881262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_68881402_68881498_68881645_68881865
ONT_simulated_read_6817206	chr9	-	678	7	ISM	ENSMUSG00000001366.15	ENSMUST00000085311.13	2155	13	12658	3124	12606	-3121	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTGTTCCTGTCCAAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	78003280	77991904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149
ONT_simulated_read_6817527	chr1	+	461	4	ISM	ENSMUSG00000005677.15	ENST00000367980.6	910	7	-26	922	-26	-432	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCGGCCTTTCCAGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	171041917	171044337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_171042055_171042512_171042644_171043947_171044118_171044314
ONT_simulated_read_6820587	chr12	-	1626	1	FSM	ENSMUSG00000112355.2	ENSMUST00000219078.2	2020	1	0	394	0	-394	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTACCCACAGGCCTAG	NA	NA	NA	NA	NA	NA	NA	NA	59767115	59765489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_59765500_59767100
ONT_simulated_read_6820905	chr7	-	260	3	ISM	ENSMUSG00000030407.3	ENSMUST00000032566.3	2710	7	4275	3574	4275	-3574	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTCTCACCCCCAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	18878941	18877200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_18877228_18878584_18878685_18878808
ONT_simulated_read_6821028	chr9	+	1151	3	ISM	ENSMUSG00000032531.16	ENSMUST00000035121.14	4328	10	0	9730	0	-9725	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTTGGTCCACCTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	102594866	102600887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_102595102_102597279_102598076_102600767
ONT_simulated_read_6821247	chr4	+	265	1	FSM	ENSMUSG00000081239.4	ENSMUST00000121022.2	441	1	0	176	0	-176	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGAATGCCTTCGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	14433890	14434155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_14433900_14434200
ONT_simulated_read_6821810	chr2	-	1705	1	ISM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	132142	198	1954	-196	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGATTGTCCGCCATCCC	NA	NA	NA	NA	NA	NA	NA	NA	9921265	9919560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_9919600_9921300
ONT_simulated_read_6822621	chr3	+	953	2	ISM	ENSMUSG00000048039.9	ENSMUST00000055984.7	2893	4	0	8701	0	-7554	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGCTGTACCGAACTCC	NA	NA	NA	NA	NA	NA	NA	NA	87837620	87839292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_87837919_87838637
ONT_simulated_read_6827802	chr17	-	2996	1	ISM	ENSMUSG00000061665.8	ENSMUST00000024709.9	5364	18	80040	403	80040	-403	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGAATGTTTTATGCT	NA	NA	NA	NA	NA	NA	NA	NA	43107240	43104244	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_43104200_43107200
ONT_simulated_read_6830179	chr1	+	163	1	Antisense	novelGene_ENSMUSG00000067071.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAAGCCCTTGCCATGGA	NA	NA	NA	NA	NA	NA	NA	NA	91340166	91340329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr1_+_91340200_91340300
ONT_simulated_read_6830303	chr6	-	815	7	ISM	ENSMUSG00000029843.5	ENSMUST00000031868.5	3427	16	27634	3735	26959	-2864	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTCCTGGTGTCCATT	NA	NA	NA	NA	NA	NA	NA	NA	35257432	35248626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_35248706_35251850_35251976_35252575_35252674_35253383_35253486_35255171_35255274_35256345_35256466_35257243
ONT_simulated_read_6836392	chr6	-	1960	1	NIC	ENSMUSG00000014748.14	novel	2984	6	NA	NA	4509	-460	mono-exon	FALSE	NA	NA	NA	NA	NA	745	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGGTTTCTTTTTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	83748286	83746326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_83746300_83748300
ONT_simulated_read_683757	chr11	+	913	6	ISM	ENSMUSG00000013483.15	ENST00000344227.6	3037	19	4741	18099	4741	-18099	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCAGGAGAGTGTTCGAGC	NA	NA	NA	NA	NA	NA	NA	NA	119212678	119217522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_119212787_119213403_119213730_119214956_119215125_119216263_119216384_119216880_119217007_119217457
ONT_simulated_read_6838184	chr2	-	726	1	FSM	ENSMUSG00000082127.3	ENSMUST00000121365.3	205	1	0	-521	0	521	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAGTACTGGAACAATAA	NA	NA	NA	NA	NA	NA	NA	NA	64305293	64304567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_64304600_64305300
ONT_simulated_read_6839854	chr11	-	495	1	ISM	ENSMUSG00000009073.17	ENSMUST00000109910.9	4720	16	81280	1917	80729	-97	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGAAGTGTGGACTGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	4718256	4717761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_4717800_4718300
ONT_simulated_read_6840750	chr8	-	299	1	ISM	ENSMUSG00000040459.12	ENSMUST00000048545.10	3197	4	23121	2027	23121	-2027	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGGGCTATGCTCTGCAAT	NA	NA	NA	NA	NA	NA	NA	NA	8717400	8717101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_8717100_8717400
ONT_simulated_read_6849130	chr13	-	2334	18	ISM	ENSMUSG00000021196.15	ENSMUST00000138703.8	4145	22	27725	1263	27673	151	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGGCCCCGCCTACTTCA	NA	NA	NA	NA	NA	NA	NA	NA	6671088	6631066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921
ONT_simulated_read_6849387	chr3	-	1049	7	ISM	ENSMUSG00000034109.16	ENSMUST00000117242.8	4551	16	53638	14351	53618	-12875	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGAAGCAGATGTAAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	75810618	75797840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_75797939_75799195_75799279_75800089_75800344_75802141_75802445_75805277_75805440_75809707_75809792_75810553
ONT_simulated_read_6852036	chr11	+	511	3	ISM	ENSMUSG00000060938.15	ENSMUST00000101014.9	657	4	0	1191	0	-1191	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGTGTTTTTGAAGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	68792435	68794145	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_68792639_68793095_68793263_68794004
ONT_simulated_read_6853116	chr8	-	2037	6	ISM	ENSMUSG00000040631.9	ENST00000566936.5	2624	7	3679	268	3679	-236	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGCAGAATGATAAGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	95594125	95590723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_95592091_95592248_95592388_95593084_95593275_95593375_95593496_95593755_95593871_95594019
ONT_simulated_read_6853294	chr16	-	667	6	ISM	ENSMUSG00000013539.15	ENSMUST00000231605.2	744	7	31147	74	11696	-24	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCACACTACAGAGTTAG	NA	NA	NA	NA	NA	NA	NA	NA	18130623	18119315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502
ONT_simulated_read_6854047	chr12	-	137	1	ISM	ENSMUSG00000113868.2	ENSMUST00000222231.2	382	3	39601	0	39601	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATTAAATGGCTTCCGCT	NA	NA	NA	NA	NA	NA	NA	NA	110013256	110013119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_110013100_110013300
ONT_simulated_read_6855310	chr5	+	603	7	ISM	ENSMUSG00000051950.11	ENSMUST00000100404.6	4570	15	0	32612	0	-32612	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGAACCCAACAGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	149601694	149653452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_149601845_149619889_149619940_149626743_149626784_149632784_149632895_149648875_149648953_149650218_149650331_149653388
ONT_simulated_read_6856860	chrX	+	351	4	ISM	ENSMUSG00000031403.15	ENST00000620277.4	1550	13	3221	6480	3221	-6480	internal_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCATAAGGATGAGAGTTA	NA	NA	NA	NA	NA	NA	NA	NA	74143658	74146078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_74143701_74144038_74144166_74144595_74144727_74146027
ONT_simulated_read_6857120	chr7	-	503	1	ISM	ENSMUSG00000073982.12	ENSMUST00000106923.2	1321	3	9810	653	9810	-653	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCAGCACTGCAACAAGAC	NA	NA	NA	NA	NA	NA	NA	NA	101889485	101888982	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_101889000_101889500
ONT_simulated_read_6857808	chr5	+	441	4	ISM	ENSMUSG00000007812.17	ENSMUST00000200039.5	1765	5	40	2470	0	-12	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTCACTGGGTAAGGACC	NA	NA	NA	NA	NA	NA	NA	NA	145168564	145172662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_145168642_145170250_145170413_145172115_145172202_145172546
ONT_simulated_read_6858264	chr8	-	780	8	ISM	ENSMUSG00000031617.17	ENSMUST00000034030.15	2678	10	4250	1961	4250	-1961	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCACCACTATACGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	78333032	78324571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_78324610_78325182_78325283_78326285_78326399_78328043_78328138_78329486_78329562_78331250_78331457_78332792_78332830_78332915
ONT_simulated_read_685861	chr1	+	583	4	NNC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	-13	-4845	intron_retention	FALSE	canonical	NA	NA	NA	NA	102	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGGAGTTTAACCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	75412604	75414972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_+_75412957_75413427_75413483_75413580_75413679_75414894
ONT_simulated_read_686152	chr18	-	1157	6	ISM	ENSMUSG00000060275.15	ENST00000358522.7	2579	11	169744	218	41209	-218	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGACGCGGACGACGCGGA	NA	NA	NA	NA	NA	NA	NA	NA	36160469	36151185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_36151736_36154110_36154339_36154905_36155034_36155358_36155483_36157358_36157462_36160445
ONT_simulated_read_6861825	chr1	-	592	1	ISM	ENSMUSG00000047539.10	ENSMUST00000051431.10	4925	5	24363	3562	24353	-155	mono-exon	FALSE	NA	NA	NA	NA	NA	588	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGGGGCTAACCTTGC	NA	NA	NA	NA	NA	NA	NA	NA	182144820	182144228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_182144200_182144800
ONT_simulated_read_6862506	chr17	-	1279	7	ISM	ENSMUSG00000034647.16	ENSMUST00000038116.13	10821	13	27166	21347	27166	-21347	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGTTAAAAGAAAATTAAA	NA	NA	NA	NA	NA	NA	NA	NA	66356902	66294039	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_66294489_66331070_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66349527_66349597_66356780
ONT_simulated_read_686502	chr17	-	323	2	ISM	ENSMUSG00000118135.2	ENSMUST00000235889.2	757	4	4677	6	4677	-6	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	26009956	26009479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_26009753_26009906
ONT_simulated_read_6865257	chr2	+	698	7	ISM	ENSMUSG00000016253.13	ENSMUST00000109075.8	2279	15	76	4106	29	-4106	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTACCTGTTTGCACA	NA	NA	NA	NA	NA	NA	NA	NA	174257672	174265189	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168
ONT_simulated_read_686756	chr11	-	746	7	ISM	ENSMUSG00000040667.12	ENSMUST00000108530.2	2389	17	15341	1581	15341	-1581	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGGAAAGGTAGGTATCA	NA	NA	NA	NA	NA	NA	NA	NA	70845439	70835508	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326
ONT_simulated_read_6867689	chr10	-	759	1	ISM	ENSMUSG00000034667.9	ENSMUST00000039810.8	5992	25	36111	2067	36111	-2067	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTCCATCTGTGATGGG	NA	NA	NA	NA	NA	NA	NA	NA	121426110	121425351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_121425400_121426100
ONT_simulated_read_6868277	chr2	-	454	3	ISM	ENSMUSG00000027109.17	ENSMUST00000102689.10	4181	7	901	34825	881	-34604	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCAGGTTCAGATTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	72809889	72801595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_72801859_72809241_72809374_72809830
ONT_simulated_read_6868411	chr17	+	185	1	ISM	ENSMUSG00000024308.16	ENSMUST00000025161.10	2898	8	180	9596	-73	-6655	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTCCTGCTCGTCGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	34138485	34138670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34138500_34138700
ONT_simulated_read_6868884	chr1	-	627	1	ISM	ENSMUSG00000025950.17	ENSMUST00000097709.11	2302	9	19665	274	19665	-272	mono-exon	FALSE	NA	NA	NA	NA	NA	492	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCCAAGTCTAGAATAAATG	NA	NA	NA	NA	NA	NA	NA	NA	65198675	65198048	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_65198000_65198700
ONT_simulated_read_6869300	chr4	+	1659	15	ISM	ENSMUSG00000028573.19	ENSMUST00000079223.11	1891	16	27737	135	0	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATACCTGTCCGTACAGAC	NA	NA	NA	NA	NA	NA	NA	NA	95473480	95815041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_95473685_95485859_95485972_95489201_95489354_95511717_95511807_95585196_95585313_95627025_95627155_95657662_95657767_95688793_95688902_95700344_95700407_95710214_95710363_95725821_95725897_95732309_95732431_95737818_95737914_95811161_95811224_95814959
ONT_simulated_read_6869378	chr9	+	352	3	ISM	ENSMUSG00000049281.17	ENST00000657123.1	1046	5	2375	775	2375	-775	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGGAATAAAGTGGTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	40190737	40199723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_40190897_40193719_40193859_40199669
ONT_simulated_read_6871668	chr11	-	1675	13	ISM	ENSMUSG00000020883.19	ENST00000394294.7	2333	14	21205	392	21205	-392	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGTGCTGACATGCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	98019202	97979914	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97980525_97981483_97981697_97982970_97983028_97983938_97983984_97985958_97986020_97987754_97987886_97989245_97989321_97990808_97990936_98000319_98000389_98001760_98001856_98004046_98004122_98006218_98006274_98019140
ONT_simulated_read_687268	chr4	+	510	2	ISM	ENSMUSG00000028478.19	ENSMUST00000107846.10	1710	6	0	20324	0	-20060	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTCCTTCTGCTCCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	44004451	44012522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_44004701_44012261
ONT_simulated_read_6875089	chr12	-	1170	4	ISM	ENSMUSG00000073164.12	ENSMUST00000149246.8	3370	5	317	5397	317	-5397	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCTAGCTAAAATGGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	23059968	23009396	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_23010256_23042788_23042850_23043051_23043179_23059845
ONT_simulated_read_6876456	chr4	-	3960	15	ISM	ENSMUSG00000038047.19	ENSMUST00000070607.9	6158	17	6377	1695	45	-1695	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACCAACTGTATTAGGATC	NA	NA	NA	NA	NA	NA	NA	NA	86523915	86498786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_86500256_86501117_86502111_86503564_86503701_86503999_86504183_86504549_86504617_86507221_86507304_86511828_86511932_86512977_86513105_86513599_86513794_86517495_86517667_86518987_86519037_86519459_86519526_86521055_86521201_86522393_86522527_86523873
ONT_simulated_read_6878617	chr9	-	739	7	ISM	ENSMUSG00000032382.15	ENST00000561026.5	1372	13	28174	603	28174	-603	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAGGTATGTATGTAATG	NA	NA	NA	NA	NA	NA	NA	NA	66003873	65996405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839
ONT_simulated_read_6881907	chr15	-	117	1	Genic_Genomic	ENSMUSG00000034022.9	novel	NA	NA	NA	NA	11592	3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGTCATTGTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	76480119	76480002	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr15_-_76480000_76480100
ONT_simulated_read_6882560	chr4	-	633	1	NIC	ENSMUSG00000028467.16	novel	3544	17	NA	NA	631	-352	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	255	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCCGCAGGCCATCAGTC	NA	NA	NA	NA	NA	NA	NA	NA	43567916	43567283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_43567300_43567900
ONT_simulated_read_6884436	chr5	-	2929	13	ISM	ENSMUSG00000005299.7	ENSMUST00000005431.6	5272	14	4173	1975	4093	-1975	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGGGCATTCACATTGC	NA	NA	NA	NA	NA	NA	NA	NA	33935988	33898991	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_33899957_33900985_33901125_33902359_33902548_33903583_33903719_33904719_33904855_33905504_33905646_33906085_33906218_33909835_33909956_33918066_33918271_33918923_33919062_33919802_33919947_33926704_33927156_33935951
ONT_simulated_read_6884722	chr11	-	1050	1	NIC	ENSMUSG00000020921.7	novel	1574	4	NA	NA	2809	0	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTGCTTCTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	102044421	102043371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_102043400_102044400
ONT_simulated_read_6888748	chr1	+	826	12	NIC	ENSMUSG00000026414.14	novel	1200	16	NA	NA	0	-629	combination_of_known_splicesites	FALSE	non_canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAACTGAGGTGGGGACA	NA	NA	NA	NA	NA	NA	NA	NA	135764091	135778547	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_+_135764185_135768598_135768651_135769638_135769650_135771511_135771553_135773292_135773383_135773635_135773672_135774459_135774494_135775446_135775511_135775718_135775836_135776548_135776627_135777087_135777199_135778448
ONT_simulated_read_6888905	chr14	-	930	1	ISM	ENSMUSG00000042888.11	ENSMUST00000057718.11	1862	3	605	845	605	-826	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGGACCCTGCAGAATTCA	NA	NA	NA	NA	NA	NA	NA	NA	101436900	101435970	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_101436000_101436900
ONT_simulated_read_6889903	chr18	+	750	1	FSM	ENSMUSG00000082051.2	ENSMUST00000119574.2	2377	1	0	1627	0	-1627	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAAATTAATGCGAGACAA	NA	NA	NA	NA	NA	NA	NA	NA	12420460	12421210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_12420500_12421200
ONT_simulated_read_6890230	chr15	-	232	2	ISM	ENSMUSG00000022555.13	ENSMUST00000023214.11	1888	17	9416	186	9416	-186	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTTCTGGAGGGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	76386735	76386400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76386589_76386691
ONT_simulated_read_6891625	chr3	+	1117	6	ISM	ENSMUSG00000027750.17	ENST00000379742.4	2910	20	14934	-50	14934	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGTGTTCCTCAAATTTT	NA	NA	NA	NA	NA	NA	NA	NA	54284980	54298458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_54285028_54291904_54291995_54292628_54292707_54293091_54293176_54296759_54296802_54297682
ONT_simulated_read_6891658	chr2	-	2234	17	ISM	ENSMUSG00000034906.16	ENSMUST00000110387.4	2695	18	6256	331	6256	-331	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCAACCACCACGGTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	126969618	126946059	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404
ONT_simulated_read_689198	chr2	+	2171	5	ISM	ENSMUSG00000040152.9	ENSMUST00000039559.9	5848	22	11064	613	11064	-613	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACTTCTATACAAATATTA	NA	NA	NA	NA	NA	NA	NA	NA	117953420	117957001	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_117953583_117953748_117954021_117954396_117954495_117954600_117954741_117955502
ONT_simulated_read_6892626	chr10	-	932	7	ISM	ENSMUSG00000020069.17	ENSMUST00000118898.8	2168	10	5692	764	5645	-764	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	62853981	62851206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864
ONT_simulated_read_6899061	chr19	-	1317	10	ISM	ENSMUSG00000024941.10	ENSMUST00000236978.2	2731	17	1809	924	1790	-848	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGTGGGCTGGGTCGGAC	NA	NA	NA	NA	NA	NA	NA	NA	5819638	5809302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5809371_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496
ONT_simulated_read_6900691	chr1	-	289	2	ISM	ENSMUSG00000047021.15	ENSMUST00000094844.4	5727	33	10050	22985	7565	-272	internal_fragment	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGTCTAGAGCCCATT	NA	NA	NA	NA	NA	NA	NA	NA	74964708	74964214	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_74964327_74964531
ONT_simulated_read_6902763	chrX	-	2339	4	ISM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	25414	358	25414	-358	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	195	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTTTATAGAAAGATCTG	NA	NA	NA	NA	NA	NA	NA	NA	37519917	37508741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794
ONT_simulated_read_6902962	chr14	+	918	6	ISM	ENSMUSG00000021737.5	ENSMUST00000022256.5	1387	8	51	2076	51	-2076	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	484	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATTACCGATACTATGTA	NA	NA	NA	NA	NA	NA	NA	NA	8348829	8355513	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_8349025_8349570_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471
ONT_simulated_read_6910340	chr1	+	671	6	ISM	ENSMUSG00000026150.15	ENST00000392059.5	1659	8	2098	750	97	-109	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGAAATGGTCATGTA	NA	NA	NA	NA	NA	NA	NA	NA	82707046	82729362	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_82707158_82708833_82709004_82713139_82713229_82719538_82719698_82728240_82728326_82729305
ONT_simulated_read_6915137	chr7	-	986	1	ISM	ENSMUSG00000051007.16	ENSMUST00000106008.3	1898	8	5199	158	5132	-158	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTCATTTGCATGTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	140988850	140987864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_140987900_140988800
ONT_simulated_read_691576	chr1	-	1403	3	ISM	ENSMUSG00000037503.13	ENSMUST00000170092.8	941	7	23207	-937	23207	937	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAGCAGGGCTGTGATG	NA	NA	NA	NA	NA	NA	NA	NA	34858838	34855378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_34856486_34857077_34857208_34858672
ONT_simulated_read_6916328	chr18	+	1531	7	ISM	ENSMUSG00000024424.16	ENSMUST00000234966.2	4385	14	18	18882	0	-16977	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCTCTGGAGCTGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	12776418	12853038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_12777101_12817893_12817943_12820008_12820138_12822829_12822945_12828292_12828648_12830947_12831117_12853006
ONT_simulated_read_6916374	chr8	-	651	6	ISM	ENSMUSG00000033282.15	ENST00000262135.9	7197	24	59125	3578	59125	-3237	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCACCATCGGCAAACTGAA	NA	NA	NA	NA	NA	NA	NA	NA	91977931	91946894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_91946918_91947999_91948134_91951880_91951966_91959435_91959620_91975336_91975408_91977777
ONT_simulated_read_6917543	chr19	+	1211	10	ISM	ENSMUSG00000024949.18	ENST00000377387.5	2813	13	228	3146	228	-2455	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCAGAGAATCGGCCCTA	NA	NA	NA	NA	NA	NA	NA	NA	6414274	6424087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_6414401_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039
ONT_simulated_read_6921919	chr19	-	140	1	ISM	ENSMUSG00000003680.17	ENSMUST00000177216.8	2167	12	10980	646	8722	-609	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGGTCTGGTCTCCCGCC	NA	NA	NA	NA	NA	NA	NA	NA	8752641	8752501	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_8752500_8752600
ONT_simulated_read_6922058	chr11	+	1076	8	ISM	ENSMUSG00000000056.8	ENST00000390006.8	1354	10	6119	99	6119	-99	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	654	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTGGAGGGTACTGAATC	NA	NA	NA	NA	NA	NA	NA	NA	121135363	121143649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_121135553_121135761_121135897_121136163_121136283_121137751_121137882_121139954_121140019_121141118_121141257_121141585_121141744_121143506
ONT_simulated_read_692357	chr1	-	773	1	ISM	ENSMUSG00000026442.15	ENSMUST00000094569.11	9739	30	171127	5168	94957	167	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGTGTTTCCGAAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	132498368	132497595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_132497600_132498400
ONT_simulated_read_6925290	chr3	+	138	2	ISM	ENSMUSG00000042035.12	ENSMUST00000195164.2	3876	11	47384	33096	47384	-33096	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCCAGACACTGCACAAAG	NA	NA	NA	NA	NA	NA	NA	NA	101333037	101334376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_101333145_101334345
ONT_simulated_read_6926095	chr2	-	1776	1	FSM	ENSMUSG00000068267.6	ENSMUST00000089510.5	4886	1	0	3110	0	-3110	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGGAGGATGATGAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	131021987	131020211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_131020200_131022000
ONT_simulated_read_6926824	chr16	-	971	7	ISM	ENSMUSG00000052516.20	ENST00000332191.12	4984	25	991	78937	991	-78937	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGTTCTTAGTGAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	73842829	73770593	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_73770675_73775295_73775502_73778868_73779041_73782475_73782601_73812758_73812887_73831872_73832012_73842709
ONT_simulated_read_692828	chr12	+	693	5	ISM	ENSMUSG00000019969.15	ENSMUST00000041806.13	2690	12	20	20219	20	-19195	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTCCTGTATAAATACAGG	NA	NA	NA	NA	NA	NA	NA	NA	83734945	83761650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_83735068_83746128_83746196_83746285_83746426_83759077_83759329_83761537
ONT_simulated_read_6931794	chr17	+	1212	9	ISM	ENSMUSG00000002833.12	ENSMUST00000226053.2	2270	16	65	3122	0	-1903	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGAGGCACACCATCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	56386698	56404470	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234
ONT_simulated_read_6932634	chr4	+	139	1	ISM	ENSMUSG00000028524.22	ENST00000682938.1	2444	18	161000	48884	160770	-7619	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACCTCCCCCACCACCAC	NA	NA	NA	NA	NA	NA	NA	NA	102778491	102778630	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_102778500_102778600
ONT_simulated_read_6933238	chr15	-	1073	1	NIC	ENSMUSG00000037465.11	novel	2144	5	NA	NA	2940	-654	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGAAAGTTGGCTTTATG	NA	NA	NA	NA	NA	NA	NA	NA	38296386	38295313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_38295300_38296400
ONT_simulated_read_6936384	chrX	+	689	6	ISM	ENSMUSG00000045103.20	ENST00000681334.1	1246	7	19	8805	3	-8805	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGCCGAGTGTCAGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	84091927	84153674	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548
ONT_simulated_read_6937230	chr8	-	2027	16	ISM	ENSMUSG00000061313.11	ENSMUST00000033975.9	4246	18	2058	1830	2058	142	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGGCGTTTACATATCCC	NA	NA	NA	NA	NA	NA	NA	NA	26242250	26217202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26225771_26225928_26226033_26226118_26228238_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126
ONT_simulated_read_6941158	chr1	+	1256	7	ISM	ENSMUSG00000026039.10	ENSMUST00000027202.9	4939	9	0	10329	0	-10329	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGAAACCAGCAATAA	NA	NA	NA	NA	NA	NA	NA	NA	58035129	58054729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_58035472_58037254_58037381_58039122_58039299_58040376_58040455_58042052_58042139_58052665_58052902_58054517
ONT_simulated_read_6942714	chr15	+	1963	11	ISM	ENSMUSG00000036661.15	ENST00000424248.2	3234	20	649	14529	649	-14529	internal_fragment	FALSE	canonical	NA	NA	NA	NA	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAAGGAAGTCTTCGAGG	NA	NA	NA	NA	NA	NA	NA	NA	73395982	73428264	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_73396122_73399764_73399877_73404667_73404788_73405109_73405329_73409138_73409261_73414568_73414666_73416206_73416311_73416794_73416995_73418969_73419492_73426905_73427166_73428196
ONT_simulated_read_6943673	chr1	-	685	1	ISM	ENSMUSG00000079658.10	ENSMUST00000188641.7	2014	4	13433	1042	13433	0	mono-exon	FALSE	NA	NA	NA	NA	NA	249	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTGTGTTTTGTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	16713675	16712990	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_16713000_16713700
ONT_simulated_read_6947906	chr7	-	2563	13	ISM	ENSMUSG00000035401.10	ENST00000524767.5	4087	21	24444	3056	24444	-3056	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGCATATCTCCCATTCA	NA	NA	NA	NA	NA	NA	NA	NA	98279615	98242894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_98243018_98243958_98244520_98246239_98246392_98248958_98249001_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337
ONT_simulated_read_694794	chr3	-	776	6	ISM	ENSMUSG00000062908.13	ENST00000370834.9	1248	10	2743	33	2743	-33	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATTGAAAAGTATAAAAATT	NA	NA	NA	NA	NA	NA	NA	NA	153642062	153628589	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931
ONT_simulated_read_6950741	chr7	-	1806	7	ISM	ENSMUSG00000040390.14	ENSMUST00000036453.14	3682	10	10026	289	10013	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTGCCCACCACCACCCG	NA	NA	NA	NA	NA	NA	NA	NA	27363993	27356088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_27356412_27357276_27357958_27358254_27358368_27358445_27358600_27360959_27361077_27362649_27362897_27363822
ONT_simulated_read_6951544	chr2	-	243	2	ISM	ENSMUSG00000027165.17	ENSMUST00000090513.11	969	7	44921	102	44921	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTCCGGTACAAACGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	101406470	101392570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_101392700_101406356
ONT_simulated_read_6951602	chr17	-	1147	8	ISM	ENSMUSG00000002625.11	ENSMUST00000236503.2	1987	15	13881	11054	13787	-11052	internal_fragment	TRUE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGCTGGGCCCGGGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	32555688	32551452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258
ONT_simulated_read_6951650	chr13	-	300	3	ISM	ENSMUSG00000006715.12	ENSMUST00000006898.10	1127	7	8155	246	8155	-246	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGCTAGGCCGTGTACAT	NA	NA	NA	NA	NA	NA	NA	NA	24937689	24936073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_24936214_24937330_24937442_24937640
ONT_simulated_read_6952602	chr11	-	314	2	ISM	ENSMUSG00000001441.14	ENSMUST00000172108.8	2924	22	57399	12716	44505	-12714	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAGCACGTGGAAGGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	97113997	97109383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97109477_97113776
ONT_simulated_read_6953504	chr3	+	719	6	NNC	ENSMUSG00000078578.10	novel	2515	7	NA	NA	-36	-5217	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGATCACAGTGGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	135144289	135165800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_+_135144632_135145421_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735
ONT_simulated_read_6956960	chr2	+	1531	11	FSM	ENSMUSG00000027523.21	ENST00000480975.5	1540	11	20	-11	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	NA	NA	NA	NA	NA	NA	NA	174169560	174188537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_174169735_174176004_174176078_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ONT_simulated_read_6957581	chr7	-	803	1	ISM	ENSMUSG00000037613.17	ENSMUST00000152703.2	1476	6	17293	163	17292	-163	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCTCTCCCACTCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	143222316	143221513	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143221500_143222300
ONT_simulated_read_6957915	chr8	+	690	1	ISM	ENSMUSG00000003573.16	ENSMUST00000140212.8	2608	10	10845	0	8280	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGGCTCCCTGAGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	70746321	70747011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70746300_70747000
ONT_simulated_read_6960094	chr9	-	1176	7	ISM	ENSMUSG00000002028.14	ENSMUST00000114689.8	16470	36	66557	4385	66555	-1497	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGAGAAGGGTCTCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	44726037	44719036	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44719475_44720360_44720491_44721011_44721096_44721932_44722037_44722198_44722378_44724283_44724359_44725871
ONT_simulated_read_6960490	chr11	-	1046	3	ISM	ENSMUSG00000020921.7	ENSMUST00000021296.7	1574	4	499	332	499	-332	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	186	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	102046731	102043703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_102044421_102045382_102045530_102046549
ONT_simulated_read_696153	chr4	-	1191	10	ISM	ENSMUSG00000028656.15	ENSMUST00000069533.12	2620	13	14452	2887	14452	-2887	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGTTTTCTTCCTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	122765252	122755726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189
ONT_simulated_read_6961541	chr5	+	503	3	ISM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	533	0	533	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	137777698	137778372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_137777808_137777887_137778025_137778115
ONT_simulated_read_6962494	chr14	-	1647	1	ISM	ENSMUSG00000044447.6	ENSMUST00000039135.6	9988	52	176923	2728	176923	-2728	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCACCATAAGATTTGCAC	NA	NA	NA	NA	NA	NA	NA	NA	67993958	67992311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_67992300_67994000
ONT_simulated_read_6965617	chr18	+	1770	1	ISM	ENSMUSG00000102918.2	ENSMUST00000076807.7	4687	4	6	33688	4	-31999	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGCCACCAACATCAGCGT	NA	NA	NA	NA	NA	NA	NA	NA	37939468	37941238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_37939500_37941200
ONT_simulated_read_6968054	chr6	-	1789	4	ISM	ENSMUSG00000030203.18	ENSMUST00000129433.4	3993	7	52504	1273	21459	435	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTCAGAATAAAACATACTAG	NA	NA	NA	NA	NA	NA	NA	NA	134716934	134693703	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_134695049_134697456_134697581_134702798_134702959_134716774
ONT_simulated_read_6972022	chr9	-	349	1	NIC	ENSMUSG00000047766.16	novel	3086	10	NA	NA	61910	-304	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGGAGGGAGGCAGGA	NA	NA	NA	NA	NA	NA	NA	NA	60495174	60494825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_60494800_60495200
ONT_simulated_read_6975151	chr7	-	1348	5	ISM	ENSMUSG00000015133.18	ENSMUST00000015277.14	7465	34	121768	1163	121768	-1163	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGCCTCCGAGTGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	65916330	65909655	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_65909842_65911485_65911588_65911793_65912645_65915172_65915290_65916238
ONT_simulated_read_6976106	chr5	-	296	3	FSM	ENSMUSG00000029499.12	ENST00000537262.1	296	3	0	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCAGATACACCGCGGATG	NA	NA	NA	NA	NA	NA	NA	NA	110431618	110422425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_110422495_110425520_110425641_110431511
ONT_simulated_read_6976565	chr13	-	205	3	ISM	ENSMUSG00000021713.10	ENSMUST00000022226.6	2342	11	164	18020	164	-17782	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAGAAGAAGGAAT	NA	NA	NA	NA	NA	NA	NA	NA	104365166	104359651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_104359701_104361857_104361961_104365113
ONT_simulated_read_6978053	chr14	+	740	1	FSM	ENSMUSG00000049235.9	ENSMUST00000094051.6	1647	1	0	907	0	-907	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGAAGGGAACCCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	43951188	43951928	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_43951200_43951900
ONT_simulated_read_6978720	chr8	-	430	4	FSM	ENSMUSG00000000743.10	ENST00000675778.1	418	4	-11	-1	-11	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	1008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGCTGTCTGTGGGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	123936986	123932879	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_123933071_123934211_123934341_123935759_123935838_123936954
ONT_simulated_read_6979294	chr2	-	1847	1	ISM	ENSMUSG00000026872.19	ENST00000638007.1	9123	9	36057	2916	36057	982	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGAGGCAATTGAGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	44877997	44876150	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_44876200_44878000
ONT_simulated_read_6979921	chr12	-	1440	1	ISM	ENSMUSG00000085642.9	ENSMUST00000140360.8	2004	4	44183	0	-8	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCCAGTTTCATTTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	20927080	20925640	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_20925600_20927100
ONT_simulated_read_698111	chr8	+	1254	7	ISM	ENSMUSG00000025812.19	ENST00000374794.8	4505	22	324950	137788	83007	41353	internal_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCTATGAAGGCTGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	128115797	128200978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_128115980_128125080_128125232_128131855_128132046_128136036_128136189_128142050_128142279_128153002_128153235_128200859
ONT_simulated_read_6982522	chr6	-	262	3	ISM	ENSMUSG00000030035.15	ENSMUST00000151393.7	837	5	132	767	0	356	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACTATGAACTCTGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	83098255	83097183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_83097269_83097752_83097858_83098183
ONT_simulated_read_6983646	chrX	-	384	4	ISM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	1632	525	1632	-525	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCAATAGCTCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	7535997	7534704	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841
ONT_simulated_read_6983973	chr10	-	1010	1	NIC	ENSMUSG00000035781.15	novel	1898	8	NA	NA	5866	-79	mono-exon	FALSE	NA	NA	NA	NA	NA	585	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCCTTCCCTTCCCCTT	NA	NA	NA	NA	NA	NA	NA	NA	79746974	79745964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_-_79746000_79747000
ONT_simulated_read_6984943	chr17	+	577	5	ISM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	3751	1744	3751	-1744	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACTTTACAATGTTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	29255352	29260603	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
ONT_simulated_read_6985034	chr5	-	899	1	ISM	ENSMUSG00000105402.5	ENSMUST00000198582.5	2879	4	14425	1520	14425	-1520	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTCCTACCCAACTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	64753618	64752719	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_64752700_64753600
ONT_simulated_read_6986704	chr19	-	303	1	FSM	ENSMUSG00002076626.1	ENSMUST00020182077.1	86	1	0	-217	0	217	mono-exon	FALSE	NA	NA	NA	NA	NA	220	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTGCCTTTTTTCTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	5849113	5848810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5848800_5849100
ONT_simulated_read_6987035	chr6	-	953	4	ISM	ENSMUSG00000030084.12	ENSMUST00000163139.8	9034	32	40046	2701	35143	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCTGGACCAATTCACATT	NA	NA	NA	NA	NA	NA	NA	NA	89299556	89295996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_89296454_89297593_89297745_89297838_89298052_89299424
ONT_simulated_read_6990095	chr1	+	640	6	ISM	ENSMUSG00000025995.17	ENSMUST00000027139.15	2953	21	19512	4060	19512	-4060	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGAGTGTTTGTCCCACG	NA	NA	NA	NA	NA	NA	NA	NA	45853837	45858719	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648
ONT_simulated_read_6990256	chr8	+	890	5	NIC	ENSMUSG00000054320.17	novel	2082	11	NA	NA	16150	-5595	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCTCGATTGTGAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	106170470	106185111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_+_106170494_106172839_106172889_106176018_106176460_106178638_106178932_106185027
ONT_simulated_read_6995063	chrX	-	358	1	ISM	ENSMUSG00000018589.9	ENSMUST00000058787.9	3150	9	196831	1188	196595	0	mono-exon	FALSE	NA	NA	NA	NA	NA	455	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACAGAGAAGAACATTGAG	NA	NA	NA	NA	NA	NA	NA	NA	163913558	163913200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_163913200_163913600
ONT_simulated_read_6995588	chr16	+	683	1	ISM	ENSMUSG00000022503.11	ENSMUST00000023146.5	2121	11	11389	409	11389	-409	mono-exon	FALSE	NA	NA	NA	NA	NA	205	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGATGTGACCTTTCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	10241200	10241883	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_10241200_10241900
ONT_simulated_read_6997416	chr8	-	893	1	ISM	ENSMUSG00000031970.17	ENSMUST00000177240.8	1463	3	8596	215	8596	-215	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCGGTTGGGAGGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	124233533	124232640	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_124232600_124233500
ONT_simulated_read_6997637	chr5	-	293	1	ISM	ENSMUSG00000044339.13	ENSMUST00000053657.13	1073	4	3958	0	3958	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	114262279	114261986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_114262000_114262300
ONT_simulated_read_6998768	chr9	-	238	1	ISM	ENSMUSG00000007892.9	ENSMUST00000008036.9	499	3	1021	0	1021	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2424	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGACTGGTCTCACTTG	NA	NA	NA	NA	NA	NA	NA	NA	61820803	61820565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_61820600_61820800
ONT_simulated_read_7000540	chr5	-	2913	1	ISM	ENSMUSG00000005299.7	ENSMUST00000005431.6	5272	14	40232	0	40152	0	mono-exon	FALSE	NA	NA	NA	NA	NA	315	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTACAGTGGTGTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	33899929	33897016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_33897000_33899900
ONT_simulated_read_7001486	chr9	-	3704	23	ISM	ENSMUSG00000032570.18	ENSMUST00000038118.15	4876	28	30471	431	5486	34	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCAGGATTAATAACTGTT	NA	NA	NA	NA	NA	NA	NA	NA	105341861	105288987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_105290389_105291832_105291975_105295248_105295345_105295742_105295891_105297380_105297498_105298772_105298842_105300141_105300309_105301368_105301420_105308693_105308792_105309852_105310024_105312250_105312408_105316539_105316645_105319964_105320055_105320144_105320241_105322416_105322515_105323250_105323376_105326020_105326088_105329002_105329079_105329973_105330043_105330732_105330886_105336858_105336968_105338215_105338278_105341824
ONT_simulated_read_7001746	chr10	-	3280	19	ISM	ENSMUSG00000012819.17	ENSMUST00000073242.11	10688	67	280321	9938	-55474	-9569	internal_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCTATGCTACAGACAATG	NA	NA	NA	NA	NA	NA	NA	NA	60212791	60148464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_60148494_60149971_60150184_60150314_60150493_60151401_60151522_60152381_60152520_60152797_60152968_60153534_60153760_60155345_60155463_60159067_60159527_60160711_60160916_60161801_60161928_60163149_60163253_60165584_60165693_60166932_60167143_60167486_60167621_60171812_60171994_60172996_60173117_60173419_60173642_60212567
ONT_simulated_read_700459	chr4	-	550	4	ISM	ENSMUSG00000028964.15	ENSMUST00000105674.8	937	8	4323	-12	3110	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	150989760	150981589	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706
ONT_simulated_read_7007003	chr7	-	685	4	ISM	ENSMUSG00000025724.13	ENST00000560266.5	1057	7	24234	59	24234	-59	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGCGATCATAAGTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	80572968	80565183	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80565653_80565922_80565981_80572094_80572133_80572848
ONT_simulated_read_7007420	chr11	+	198	3	ISM	ENSMUSG00000020515.14	ENST00000517876.5	1034	6	2768	1141	2768	-1137	internal_fragment	FALSE	canonical	NA	NA	NA	NA	322	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACGATGCCAAGTATTGT	NA	NA	NA	NA	NA	NA	NA	NA	58004852	58008283	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_58004921_58006090_58006202_58008264
ONT_simulated_read_7007733	chr18	+	1234	12	ISM	ENSMUSG00000001700.11	ENSMUST00000070166.6	2605	14	0	11865	0	-11637	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGATACAGGATTAACACTC	NA	NA	NA	NA	NA	NA	NA	NA	56565203	56624999	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_56565430_56602604_56602725_56607090_56607203_56609674_56609742_56611920_56612025_56615692_56615789_56618283_56618356_56618447_56618529_56621822_56621935_56622686_56622810_56623742_56623831_56624966
ONT_simulated_read_7010620	chr6	-	720	1	NIC	ENSMUSG00000059878.13	novel	3187	2	NA	NA	1567	-1511	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCCTGGAAAAGGGGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	116604095	116603375	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_116603400_116604100
ONT_simulated_read_7011278	chr15	-	1751	5	ISM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	6801	423	6801	-423	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	341	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGACAACTTCAGATTCTA	NA	NA	NA	NA	NA	NA	NA	NA	10479232	10475287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158
ONT_simulated_read_7012951	chr9	-	476	1	FSM	ENSMUSG00000053128.16	ENSMUST00000056328.6	2724	1	4	2244	4	-2237	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATAGTGGCAACCTTGAC	NA	NA	NA	NA	NA	NA	NA	NA	44024797	44024321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_44024300_44024800
ONT_simulated_read_701349	chr19	-	231	1	ISM	ENSMUSG00000055044.13	ENSMUST00000068439.13	2571	7	48863	1350	48863	-1350	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGCTCTCTCCTCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	40211197	40210966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_40211000_40211200
ONT_simulated_read_7013493	chr9	-	1269	1	FSM	ENSMUSG00000054871.6	ENSMUST00000068140.6	1712	1	0	443	0	-443	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGGGCTGAAGGGTGGGAT	NA	NA	NA	NA	NA	NA	NA	NA	123089829	123088560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_123088600_123089800
ONT_simulated_read_7016760	chr14	+	1912	11	ISM	ENSMUSG00000022019.17	ENSMUST00000169504.8	5280	12	27	8379	0	-5384	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCCGCCTCTGAAAGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	87654101	87743823	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_87654285_87694469_87694555_87696192_87696259_87709511_87709673_87712134_87712277_87714825_87714898_87718169_87718320_87722994_87723136_87723627_87723785_87724597_87724724_87743194
ONT_simulated_read_7016871	chr4	+	1371	1	ISM	ENSMUSG00000034926.4	ENSMUST00000047973.4	4028	9	26133	572	26133	-572	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAACCTGTGTCACCCAA	NA	NA	NA	NA	NA	NA	NA	NA	106444367	106445738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_106444400_106445700
ONT_simulated_read_7018757	chr5	+	2292	22	ISM	ENSMUSG00000029176.14	ENSMUST00000031072.14	3854	28	8830	774	8830	-774	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGCATTTCGGGTACTT	NA	NA	NA	NA	NA	NA	NA	NA	53000183	53024365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
ONT_simulated_read_7019575	chrX	-	455	2	ISM	ENSMUSG00000067567.13	ENST00000373560.7	779	5	6821	0	6821	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	992	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTCATTCACTTACTCG	NA	NA	NA	NA	NA	NA	NA	NA	101541876	101458884	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_101459200_101541736
ONT_simulated_read_7020830	chr2	-	531	3	ISM	ENSMUSG00000036890.14	ENST00000392867.7	2134	7	73360	6791	4246	-6791	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGCTTTCATGTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	44642203	44461224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_44461296_44525013_44525329_44642058
ONT_simulated_read_7024236	chr13	+	421	4	ISM	ENSMUSG00000046949.17	ENSMUST00000058978.9	3842	7	0	8858	0	-6054	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGAAGAAAGCTCTGACC	NA	NA	NA	NA	NA	NA	NA	NA	34148669	34163568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_34148784_34152172_34152261_34156294_34156460_34163514
ONT_simulated_read_7025358	chr15	-	430	5	ISM	ENSMUSG00000022425.17	ENST00000522167.5	1715	14	13354	6670	13354	-6531	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAATGGGGTCAACGTAA	NA	NA	NA	NA	NA	NA	NA	NA	54723468	54709292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_54709342_54710644_54710723_54711570_54711707_54713386_54713524_54723438
ONT_simulated_read_7030617	chr9	-	1339	9	ISM	ENSMUSG00000032504.16	ENSMUST00000111861.4	3223	18	33744	549	33744	-549	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCGGACAGGCTCCATACC	NA	NA	NA	NA	NA	NA	NA	NA	113503568	113484088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_113484176_113485084_113485276_113486153_113486278_113488898_113488994_113490013_113490149_113491336_113491586_113500824_113500995_113501770_113501883_113503392
ONT_simulated_read_7030976	chr12	+	2359	20	ISM	ENSMUSG00000058070.15	ENSMUST00000109860.8	4160	22	49037	1172	49037	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTTATATAGGGCAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	108438111	108504651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_108438245_108454547_108454680_108468648_108468678_108472737_108472868_108475344_108475495_108476435_108476506_108478079_108478191_108479233_108479330_108480636_108480772_108481374_108481475_108482718_108482874_108487574_108487701_108487906_108488039_108493955_108494024_108496562_108496652_108500912_108501011_108501123_108501212_108502485_108502582_108503592_108503724_108504361
ONT_simulated_read_70318	chr11	-	2020	11	ISM	ENSMUSG00000017724.15	ENST00000538265.5	2092	12	542	-4	346	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTATTTGCTCTTTGCT	NA	NA	NA	NA	NA	NA	NA	NA	101675149	101660572	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665072_101666143_101666271_101667918_101667973_101674792_101674841_101675055
ONT_simulated_read_7033673	chr17	-	1089	1	NIC	ENSMUSG00000054723.7	novel	2226	2	NA	NA	1159	-794	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCCCCCTTCTGGAGGGG	NA	NA	NA	NA	NA	NA	NA	NA	57022818	57021729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_57021700_57022800
ONT_simulated_read_703601	chr11	-	1297	1	ISM	ENSMUSG00000018920.12	ENSMUST00000019064.9	2699	5	4575	130	4575	-130	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCTGGGGACTTGACAAC	NA	NA	NA	NA	NA	NA	NA	NA	70346235	70344938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_70344900_70346200
ONT_simulated_read_7036333	chrX	-	1595	1	ISM	ENSMUSG00000086503.5	ENSMUST00000127786.4	17946	7	15233	6061	15233	-6061	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACTGTTTCTACAGGACA	NA	NA	NA	NA	NA	NA	NA	NA	102511627	102510032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_102510000_102511600
ONT_simulated_read_7038497	chr17	+	200	1	ISM	ENSMUSG00000024308.16	ENSMUST00000025161.10	2898	8	0	9761	0	-6820	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAACTCTGTTTGGCCCCTG	NA	NA	NA	NA	NA	NA	NA	NA	34138305	34138505	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34138300_34138500
ONT_simulated_read_7039206	chr9	-	1329	4	NIC	ENSMUSG00000038412.9	novel	713	6	NA	NA	-81	-230	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGGAAATACATGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	121686759	121677858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_121678756_121679253_121679389_121681556_121681672_121686577
ONT_simulated_read_7040211	chr2	+	1647	10	FSM	ENSMUSG00000059005.14	ENST00000676681.1	3816	10	76	2093	0	-44	multi-exon	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATTAGAATTGGGAAATA	NA	NA	NA	NA	NA	NA	NA	NA	75489661	75496377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75495371_75495495_75495577_75495646_75495741
ONT_simulated_read_7041961	chr19	+	2093	8	ISM	ENSMUSG00000024754.14	ENST00000377066.9	4616	22	39451	-131	39451	131	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGCCACTTCCTAAACTG	NA	NA	NA	NA	NA	NA	NA	NA	21809450	21834485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_21809607_21812781_21812991_21819404_21819588_21821983_21822204_21825300_21825400_21829588_21829744_21833022_21833127_21833518
ONT_simulated_read_7043203	chr9	-	1640	8	ISM	ENSMUSG00000032402.13	ENSMUST00000034973.10	5090	9	90105	2894	90105	-2894	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTATGTGTCCTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	63575171	63556942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_63557668_63559762_63559908_63561967_63562106_63562832_63563046_63570946_63570998_63573429_63573505_63574756_63574889_63575010
ONT_simulated_read_7044513	chr12	-	1829	15	ISM	ENSMUSG00000052593.17	ENSMUST00000064536.13	4443	19	23685	1958	23592	-1664	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACACCATCCAGGAAGACC	NA	NA	NA	NA	NA	NA	NA	NA	21399948	21375475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_21375628_21376119_21376171_21378045_21378135_21379054_21379134_21380033_21380165_21382076_21382212_21382570_21382675_21383954_21384155_21386633_21386787_21390472_21390562_21390675_21390821_21392864_21392979_21395621_21395712_21397297_21397432_21399785
ONT_simulated_read_7046929	chr17	-	702	10	ISM	ENSMUSG00000024012.19	ENSMUST00000235088.2	1660	12	6453	643	1970	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCTGGAGTAACCTAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	29559872	29551692	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555191_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764
ONT_simulated_read_7047324	chr4	-	1050	5	ISM	ENSMUSG00000028678.14	ENSMUST00000106436.8	2378	19	13512	-440	13512	-64	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTAGTTCTTGCCTTTAT	NA	NA	NA	NA	NA	NA	NA	NA	117022429	117016899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338
ONT_simulated_read_7048587	chr12	-	945	1	NIC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	29508	622	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCTTCCAGACTCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	13269630	13268685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_13268700_13269600
ONT_simulated_read_7048867	chr6	+	1473	5	ISM	ENSMUSG00000029763.18	ENSMUST00000052266.15	4824	18	613015	1214	612968	-1214	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTGTCCTTCCAGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	33839034	33949700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_33839175_33887422_33887565_33895335_33895515_33898312_33898473_33948848
ONT_simulated_read_704914	chr15	-	714	7	ISM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	31	6403	31	-5743	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGGATGAGGAGGGGCG	NA	NA	NA	NA	NA	NA	NA	NA	98560739	98549417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
ONT_simulated_read_70493	chr7	+	837	8	ISM	ENSMUSG00000030805.15	ENSMUST00000033075.14	1456	11	921	111	717	-92	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGACAGTTTTCAATGTCC	NA	NA	NA	NA	NA	NA	NA	NA	127441856	127448080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740_127447840_127447922
ONT_simulated_read_7051333	chr10	-	422	4	ISM	ENSMUSG00000020115.4	ENST00000676930.1	2424	16	14624	7487	14624	-7048	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTGGCCGACACCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	121400003	121389861	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_121389930_121391891_121391971_121393106_121393209_121399830
ONT_simulated_read_7051654	chr2	-	443	2	ISM	ENSMUSG00000037773.15	ENSMUST00000110277.2	1689	8	2582	705	2173	-705	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATACAATGCAATGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	130264025	130261583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_130261811_130263809
ONT_simulated_read_7052838	chr17	-	973	8	ISM	ENSMUSG00000067148.16	ENSMUST00000087026.13	1314	9	254	181	254	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTACACACATACCTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	46558726	46555026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_46555147_46555231_46555349_46555451_46555602_46555724_46555878_46555956_46556077_46556541_46556675_46557032_46557141_46558654
ONT_simulated_read_7053802	chr1	+	536	2	ISM	ENSMUSG00000042671.13	ENSMUST00000111814.8	678	6	25249	-171	25213	132	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	593	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGAGGCAGCACCGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	153566667	153568863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_153566811_153568470
ONT_simulated_read_7053945	chr8	-	761	1	ISM	ENSMUSG00000031660.14	ENSMUST00000034085.8	3625	17	29675	700	29440	552	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCATTGTAGATTCCATG	NA	NA	NA	NA	NA	NA	NA	NA	89059147	89058386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_89058400_89059100
ONT_simulated_read_7054115	chr11	-	704	4	ISM	ENSMUSG00000017631.20	ENST00000543210.6	958	8	13939	-229	13939	229	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGATGCTCCGTGCTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	76314002	76309698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_76310020_76310560_76310709_76312978_76313085_76313873
ONT_simulated_read_7054535	chr13	-	959	7	ISM	ENSMUSG00000021460.18	ENST00000303617.5	1149	9	10452	36	10452	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGTTATACCAAATGT	NA	NA	NA	NA	NA	NA	NA	NA	53073125	52989154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53041276_53041334_53043138_53043232_53073036
ONT_simulated_read_7055582	chr12	-	1350	1	ISM	ENSMUSG00000020659.17	ENSMUST00000064240.14	3937	6	12101	1276	12101	796	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATTGTGAATTTCAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	31537453	31536103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_31536100_31537500
ONT_simulated_read_7056014	chr12	-	773	7	ISM	ENSMUSG00000021069.18	ENSMUST00000071250.13	2825	20	16560	8898	16476	-8884	internal_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCGTGGGCTGCCACGCG	NA	NA	NA	NA	NA	NA	NA	NA	70257897	70246482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_70246580_70246905_70247053_70248042_70248136_70248618_70248763_70253135_70253219_70254444_70254557_70257800
ONT_simulated_read_7058997	chr8	+	573	4	ISM	ENSMUSG00000015568.17	ENSMUST00000015712.15	4115	10	166	12260	166	-12260	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGAGCCCATGCTGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	69333308	69347326	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_69333493_69340094_69340256_69345246_69345427_69347278
ONT_simulated_read_7059484	chr13	-	243	1	ISM	ENSMUSG00000021411.17	ENSMUST00000053459.15	2684	5	556	24854	556	-24854	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACAGACTCCTGGCGGC	NA	NA	NA	NA	NA	NA	NA	NA	34836913	34836670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_34836700_34836900
ONT_simulated_read_7059499	chr11	+	404	1	ISM	ENSMUSG00000020473.14	ENSMUST00000102923.10	3831	21	0	9738	0	-9738	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCCCGCAAATCCAAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	5811946	5812350	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_5811900_5812400
ONT_simulated_read_7060251	chr19	-	2327	7	ISM	ENSMUSG00000049303.11	ENSMUST00000059295.10	3581	8	9495	730	9495	-730	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATTGAGGGGATCGCAT	NA	NA	NA	NA	NA	NA	NA	NA	4517980	4496665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4497889_4500956_4501091_4502304_4502426_4503792_4504009_4506522_4506916_4510644_4510839_4517934
ONT_simulated_read_7061560	chr14	-	464	1	NIC	ENSMUSG00000022098.11	novel	3684	20	NA	NA	44938	-229	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGTGTCCCTAATCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	70712690	70712226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_70712200_70712700
ONT_simulated_read_7064039	chr1	-	2314	5	ISM	ENSMUSG00000026556.16	ENSMUST00000027837.13	5698	8	17248	2701	17248	768	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCATGTGATCATAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	171837614	171831227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007
ONT_simulated_read_70675	chr10	+	669	3	ISM	ENSMUSG00000020260.10	ENSMUST00000020493.9	2290	9	7699	681	7699	-681	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	152	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCAGAAATAGAAGAACATT	NA	NA	NA	NA	NA	NA	NA	NA	77102750	77104728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_77102928_77103017_77103142_77104360
ONT_simulated_read_7068255	chr4	+	972	7	ISM	ENSMUSG00000028280.10	ENST00000435811.5	1919	9	153	2912	0	-2912	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTCCTGGGTGTCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	33132520	33160210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_33132776_33148920_33149028_33151368_33151437_33152412_33152637_33157059_33157143_33158036_33158178_33160116
ONT_simulated_read_70683	chr6	-	244	2	ISM	ENSMUSG00000029776.12	ENSMUST00000031788.9	1825	8	74	84033	74	-84033	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGCTATCCACTCATCCT	NA	NA	NA	NA	NA	NA	NA	NA	52617300	52607245	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_52607335_52617145
ONT_simulated_read_7068504	chr4	+	780	5	ISM	ENSMUSG00000043411.16	ENSMUST00000055131.13	5722	28	0	50410	0	-50410	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGGATGTTCGGAATGTT	NA	NA	NA	NA	NA	NA	NA	NA	137321517	137335432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368
ONT_simulated_read_7070057	chr11	-	259	3	ISM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	982	615	982	-615	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAAGGAGTGTGCAGACTT	NA	NA	NA	NA	NA	NA	NA	NA	97672281	97668967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97668991_97669090_97669205_97672159
ONT_simulated_read_707011	chr1	+	1146	8	NIC	ENSMUSG00000026418.17	novel	1150	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	135727570	135738727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_+_135727759_135730331_135730362_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
ONT_simulated_read_7071153	chr17	-	544	1	FSM	ENSMUSG00000045316.6	ENSMUST00000049642.6	1473	1	0	929	0	-929	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTACGTGGCCGGCTATG	NA	NA	NA	NA	NA	NA	NA	NA	25069338	25068794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_25068800_25069300
ONT_simulated_read_7072716	chr1	+	262	2	ISM	ENSMUSG00000056569.12	ENSMUST00000111334.2	1278	6	0	2019	0	-2019	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCGCTACCAGCCTGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	170983083	170986057	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_170983218_170985929
ONT_simulated_read_7076307	chr3	+	564	6	ISM	ENSMUSG00000027985.15	ENST00000510624.5	1422	11	390	29931	9	-29931	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTAGAGCCGAGGCCACA	NA	NA	NA	NA	NA	NA	NA	NA	130906454	130986901	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_130906470_130907504_130907572_130909061_130909196_130978291_130978425_130982983_130983075_130986777
ONT_simulated_read_707760	chr1	-	422	2	ISM	ENSMUSG00000016194.15	ENSMUST00000160929.8	1256	5	17832	270	17832	48	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	423	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACCCACAAAAGTATCTTT	NA	NA	NA	NA	NA	NA	NA	NA	192906074	192904259	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_192904537_192905929
ONT_simulated_read_7078334	chr3	+	967	2	ISM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	30	9168	30	-9168	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCTGAAGCTCAAGACAC	NA	NA	NA	NA	NA	NA	NA	NA	122068066	122069752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_122068128_122068846
ONT_simulated_read_7078906	chr16	-	691	1	ISM	ENSMUSG00000022754.7	ENSMUST00000023435.6	2701	6	79419	896	79419	-896	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGGTATTCACATAACCT	NA	NA	NA	NA	NA	NA	NA	NA	56627110	56626419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_56626400_56627100
ONT_simulated_read_707932	chrX	-	705	3	ISM	ENSMUSG00000087365.8	ENSMUST00000129764.8	868	4	391	0	391	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAGAATACAGGAAATT	NA	NA	NA	NA	NA	NA	NA	NA	52145646	52144083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_52144368_52144732_52145042_52145534
ONT_simulated_read_7080478	chr1	+	779	6	ISM	ENSMUSG00000026342.11	ENSMUST00000027580.11	2733	16	0	25204	0	-25204	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACCGAAAAGAGTGAGTTA	NA	NA	NA	NA	NA	NA	NA	NA	125488752	125498353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_125489022_125490011_125490103_125490236_125490379_125494204_125494349_125496283_125496347_125498283
ONT_simulated_read_7080514	chr6	-	1134	10	ISM	ENSMUSG00000056698.12	ENSMUST00000070990.8	2122	12	10660	683	-1169	42	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	191	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACTAAAGAATCATGTCT	NA	NA	NA	NA	NA	NA	NA	NA	72564666	72543599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593
ONT_simulated_read_7080831	chr7	+	323	3	ISM	ENSMUSG00000031029.7	ENSMUST00000033342.7	2514	8	3978	2229	3978	-2229	internal_fragment	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCTCGCATCCAGGATG	NA	NA	NA	NA	NA	NA	NA	NA	108537601	108539929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_108537754_108539396_108539489_108539850
ONT_simulated_read_708120	chr14	-	657	1	NIC	ENSMUSG00000021820.19	novel	3847	23	NA	NA	56485	-61	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTCGCAGCCAGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	20787549	20786892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_20786900_20787500
ONT_simulated_read_708385	chr14	-	828	1	NIC	ENSMUSG00000021891.9	novel	2762	6	NA	NA	12075	-758	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGCAGGTGAAACTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	31204890	31204062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_31204100_31204900
ONT_simulated_read_7085809	chr1	-	854	1	ISM	ENSMUSG00000026374.15	ENSMUST00000027623.9	7063	6	10419	5366	10419	-5366	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCACCTTACACCCCGGCT	NA	NA	NA	NA	NA	NA	NA	NA	118228727	118227873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_118227900_118228700
ONT_simulated_read_7087884	chr12	-	709	1	ISM	ENSMUSG00000001729.15	ENSMUST00000001780.10	2690	14	19515	232	16803	-232	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTAGCGGGTACCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	112621195	112620486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_112620500_112621200
ONT_simulated_read_708803	chr6	+	2961	21	FSM	ENSMUSG00000029686.16	ENST00000663835.1	2997	21	54	-18	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATATTCCCATTGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	47431321	47503073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_47431418_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
ONT_simulated_read_7088700	chr11	-	735	1	ISM	ENSMUSG00000017631.20	ENSMUST00000094012.11	5236	22	90244	1707	17940	661	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCACAGAGCTGGAAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	76310001	76309266	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_76309300_76310000
ONT_simulated_read_7091870	chr9	+	817	6	NIC	ENSMUSG00000001833.18	novel	2516	14	NA	NA	0	5474	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGAATTAATTAACTTAC	NA	NA	NA	NA	NA	NA	NA	NA	25163746	25205102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980
ONT_simulated_read_7093008	chr15	-	789	2	ISM	ENSMUSG00000018042.19	ENSMUST00000162834.3	1982	9	11252	540	11252	-540	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	880	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGTACCATGTCTACCCA	NA	NA	NA	NA	NA	NA	NA	NA	83043126	83038234	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_83038924_83043026
ONT_simulated_read_7093464	chr1	+	1954	11	ISM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	20538	0	20433	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCGTGTTGTGTGCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	180417031	180428819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
ONT_simulated_read_7093527	chr9	-	1903	1	ISM	ENSMUSG00000032449.14	ENSMUST00000085206.11	5227	7	31944	2350	5257	-1746	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCACGCAGGGGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	96961266	96959363	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_96959400_96961300
ONT_simulated_read_7094268	chr9	-	881	4	ISM	ENSMUSG00000031990.16	ENSMUST00000034472.16	1942	9	55210	423	55210	-423	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGACCCAGGAAACTC	NA	NA	NA	NA	NA	NA	NA	NA	27011479	27009102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378
ONT_simulated_read_70982	chr1	-	1446	12	ISM	ENSMUSG00000025968.17	ENST00000423725.5	2274	17	1573	6417	1573	-6279	internal_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAGAAGCGATTAGGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	63208495	63189224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387
ONT_simulated_read_7099940	chr15	-	313	1	ISM	ENSMUSG00000054967.8	ENSMUST00000229055.2	2212	5	13284	1481	5846	-1001	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCCATGTATGCGGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	76796364	76796051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76796100_76796400
ONT_simulated_read_7101209	chr6	-	1106	1	ISM	ENSMUSG00000039841.15	ENSMUST00000115320.8	4311	6	17248	3631	17248	5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAGGAAACCAAAACTTTC	NA	NA	NA	NA	NA	NA	NA	NA	28244662	28243556	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_28243600_28244700
ONT_simulated_read_7112663	chr17	-	2139	2	ISM	ENSMUSG00000024053.12	ENSMUST00000232777.2	3873	8	35676	4290	35521	-4280	internal_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGGCGTCATCATGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	71582278	71563458	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_71563688_71580368
ONT_simulated_read_7115082	chr1	-	1106	1	FSM	ENSMUSG00000104496.2	ENSMUST00000191844.2	1369	1	0	263	0	-263	mono-exon	FALSE	NA	NA	NA	NA	NA	461	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGATGAAGCAGATCATTAA	NA	NA	NA	NA	NA	NA	NA	NA	139857346	139856240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_139856200_139857300
ONT_simulated_read_7122423	chr2	-	576	8	ISM	ENSMUSG00000039128.14	ENSMUST00000043864.9	1827	13	22045	1348	21803	-93	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGCCCCTATCTGAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	5827930	5800452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912
ONT_simulated_read_7122455	chr11	-	1458	1	ISM	ENSMUSG00000042363.15	ENSMUST00000047028.9	3362	5	4574	1449	3866	-1447	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCATTGCTTTGGGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	20776482	20775024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_20775000_20776500
ONT_simulated_read_7123016	chr15	-	1431	1	ISM	ENSMUSG00000022440.10	ENSMUST00000023075.9	2402	3	4448	401	4415	-399	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTCTAGGGACTGAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	78409377	78407946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_78407900_78409400
ONT_simulated_read_7123160	chr7	-	160	1	ISM	ENSMUSG00000101970.9	ENST00000629346.2	871	3	1855	53	1855	-53	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAATTGTCATGTCATAG	NA	NA	NA	NA	NA	NA	NA	NA	73189639	73189479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_73189500_73189600
ONT_simulated_read_7125806	chr4	-	848	1	ISM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	2390	689	2390	1	mono-exon	FALSE	NA	NA	NA	NA	NA	406	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGTGCTAGAGAAGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	127220564	127219716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_127219700_127220600
ONT_simulated_read_713111	chr6	+	850	8	ISM	ENSMUSG00000052337.16	ENSMUST00000166938.8	2413	13	41	12067	41	-11747	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTTGTGGTCCAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	71808442	71840167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71833895_71834033_71837986_71838091_71839328_71839465_71840124
ONT_simulated_read_713124	chr2	-	1962	7	ISM	ENSMUSG00000038369.15	ENSMUST00000043126.12	6872	14	2644	25049	2644	-4184	internal_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGGCCCAGCAACAAGG	NA	NA	NA	NA	NA	NA	NA	NA	155280059	155257624	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155257849_155260797_155260945_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779
ONT_simulated_read_7135813	chr10	-	1939	16	ISM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	9873	1029	9873	-1029	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTGGCTGCCTCACCA	NA	NA	NA	NA	NA	NA	NA	NA	77835768	77823809	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659
ONT_simulated_read_7138915	chr10	-	771	1	ISM	ENSMUSG00000046567.11	ENSMUST00000054471.10	2564	7	15655	705	10266	-94	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTTATAATTATACTTCA	NA	NA	NA	NA	NA	NA	NA	NA	100409602	100408831	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_100408800_100409600
ONT_simulated_read_7140171	chr19	-	755	5	ISM	ENSMUSG00000034371.10	ENSMUST00000236950.2	2437	18	0	6835	0	-6832	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGCCTCCCCATCCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	10582748	10576395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582582
ONT_simulated_read_7140461	chr2	+	863	5	ISM	ENSMUSG00000003660.11	ENSMUST00000103220.4	6745	45	29693	0	29693	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCCTTAACAGTGATAC	NA	NA	NA	NA	NA	NA	NA	NA	127080011	127082371	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_127080156_127080419_127080581_127080658_127080741_127081798_127081892_127081988
ONT_simulated_read_7141764	chr9	-	428	2	ISM	ENSMUSG00000032582.15	ENSMUST00000183032.8	3716	21	12361	79525	12361	-79525	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGGGGATTTTCGGGA	NA	NA	NA	NA	NA	NA	NA	NA	107737659	107730286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_107730603_107737547
ONT_simulated_read_7145721	chr16	-	775	1	FSM	ENSMUSG00000107002.2	ENSMUST00000202722.2	1445	1	0	670	0	-670	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGATCTTGTTAATGATAG	NA	NA	NA	NA	NA	NA	NA	NA	31767312	31766537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_31766500_31767300
ONT_simulated_read_714586	chr11	+	523	5	FSM	ENSMUSG00000039850.17	ENST00000323854.9	525	5	1	1	1	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGGGGCTGTGGTGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	119382610	119393653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_119382783_119390671_119390712_119391416_119391530_119393118_119393188_119393524
ONT_simulated_read_7145981	chr5	-	573	4	ISM	ENSMUSG00000041740.17	ENST00000413266.6	2636	17	28320	0	28320	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTTGAGCCGCCTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	115382152	115379837	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_115380121_115380451_115380611_115380692_115380751_115382079
ONT_simulated_read_7150353	chr15	-	1101	1	ISM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	27519	888	27519	-888	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTATAATTTAAGTGGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	51827624	51826523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_51826500_51827600
ONT_simulated_read_7153313	chr8	+	821	7	ISM	ENSMUSG00000031820.10	ENSMUST00000002473.10	1433	9	0	1844	0	-1844	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGTGCAAACCATCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	71849504	71855419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_71849665_71850322_71850670_71851035_71851095_71852169_71852291_71852372_71852452_71854323_71854349_71855389
ONT_simulated_read_7154260	chr4	-	385	2	ISM	ENSMUSG00000028427.14	ENSMUST00000054945.8	2154	6	10194	1633	10194	0	internal_fragment	FALSE	canonical	NA	NA	NA	NA	185	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGCAGAGGAGTGAACTG	NA	NA	NA	NA	NA	NA	NA	NA	41035254	41034706	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_41034972_41035134
ONT_simulated_read_7154932	chr8	-	194	2	ISM	ENSMUSG00000058833.12	ENSMUST00000136913.2	671	5	157	1552	157	-1552	internal_fragment	FALSE	canonical	NA	NA	NA	NA	209	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGGAAGCAGAGTTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	70959230	70958500	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70958611_70959146
ONT_simulated_read_7158414	chr2	-	736	1	ISM	ENSMUSG00000041219.15	ENSMUST00000110948.8	4878	11	16380	54	13044	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAATGTTATTTA	NA	NA	NA	NA	NA	NA	NA	NA	113662626	113661890	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_113661900_113662600
ONT_simulated_read_716162	chr2	+	935	6	ISM	ENSMUSG00000026781.18	ENST00000676997.1	1541	11	-123	20977	0	-20975	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTCCTCACGTGATCC	NA	NA	NA	NA	NA	NA	NA	NA	22959338	22979800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602
ONT_simulated_read_7161934	chr7	+	855	8	ISM	ENSMUSG00000030890.17	ENSMUST00000163389.9	1749	13	4247	304	3874	-269	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATGATTGTGCCTATC	NA	NA	NA	NA	NA	NA	NA	NA	105390178	105391825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
ONT_simulated_read_7162865	chr5	+	272	2	ISM	ENSMUSG00000036968.16	ENSMUST00000110934.9	1855	6	0	3613	0	-3613	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTCGAACTGGCCGATCC	NA	NA	NA	NA	NA	NA	NA	NA	138185746	138188567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_138185983_138188531
ONT_simulated_read_7162919	chr5	+	261	1	ISM	ENSMUSG00000029681.13	ENSMUST00000031692.12	1758	6	0	13312	0	-4905	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGCTAAAGATGACATCAAG	NA	NA	NA	NA	NA	NA	NA	NA	135197136	135197397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_135197100_135197400
ONT_simulated_read_7163198	chr15	-	595	7	ISM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	2603	4310	2603	-4310	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGTTTGCCACTGACGC	NA	NA	NA	NA	NA	NA	NA	NA	77852410	77847507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375
ONT_simulated_read_7163630	chr6	-	926	7	ISM	ENSMUSG00000002870.9	ENSMUST00000058011.8	3371	16	8878	2588	8878	-2588	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTCAGACACCACCCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	88866884	88863043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769
ONT_simulated_read_7163643	chr4	+	532	5	ISM	ENSMUSG00000023571.5	ENSMUST00000024338.5	1315	8	2779	8	2779	-8	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCGCTCTTGGGTGCACT	NA	NA	NA	NA	NA	NA	NA	NA	156049553	156051078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_156049589_156050050_156050160_156050322_156050414_156050538_156050618_156050860
ONT_simulated_read_7163926	chr4	-	769	1	ISM	ENSMUSG00000029073.10	ENSMUST00000030950.8	2662	3	3949	0	3949	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGATCCATGTGTACAT	NA	NA	NA	NA	NA	NA	NA	NA	155949948	155949179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_155949200_155949900
ONT_simulated_read_7163929	chr5	+	1925	13	ISM	ENSMUSG00000029407.11	ENSMUST00000031355.10	3898	24	43451	679	43443	-679	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTATGTTCATCTGA	NA	NA	NA	NA	NA	NA	NA	NA	92329247	92349975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_92329354_92329756_92329969_92335093_92335205_92335556_92335676_92335801_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92346194_92346294_92347675_92347784_92348993_92349210_92349715
ONT_simulated_read_7165232	chr16	+	1267	10	NIC	ENSMUSG00000055447.20	novel	1271	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	49676018	49731444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49731236
ONT_simulated_read_7169361	chr14	-	1024	5	ISM	ENSMUSG00000037824.7	ENST00000372164.7	2338	7	18729	1075	18729	195	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	223	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGGTGCAAACATGCC	NA	NA	NA	NA	NA	NA	NA	NA	40637507	40629524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336
ONT_simulated_read_7170945	chr15	-	795	5	ISM	ENSMUSG00000023169.16	ENSMUST00000100262.4	3183	16	57518	491	57518	-491	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTCCTCCCGTCTCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	96482325	96474358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224
ONT_simulated_read_7173171	chr8	+	1350	10	ISM	ENSMUSG00000031913.10	ENSMUST00000034388.10	2178	11	0	1271	0	-1271	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGATTGATGATCTTCT	NA	NA	NA	NA	NA	NA	NA	NA	107757853	107771116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_107758124_107763268_107763381_107763474_107763623_107765559_107765622_107765721_107765842_107767505_107767663_107768823_107768973_107769245_107769328_107769543_107769764_107771086
ONT_simulated_read_7177287	chr17	-	471	3	ISM	ENSMUSG00000024173.12	ENST00000211076.5	736	4	297	97	297	-97	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCAGCTGGGGTGAGGACT	NA	NA	NA	NA	NA	NA	NA	NA	25563872	25562498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_25562558_25562629_25562794_25563624
ONT_simulated_read_7179198	chr5	+	1018	1	ISM	ENSMUSG00000029101.17	ENSMUST00000030984.14	5472	17	15328	67805	0	-66645	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGACAGGCGGTTCTTCGGG	NA	NA	NA	NA	NA	NA	NA	NA	35122116	35123134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_35122100_35123100
ONT_simulated_read_7179699	chr3	-	241	2	ISM	ENSMUSG00000027669.15	ENSMUST00000108234.8	2510	11	28761	1184	8629	-178	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGACGGCATGGCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	32641905	32639330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_32639376_32641709
ONT_simulated_read_7181417	chr14	-	1658	1	FSM	ENSMUSG00000057886.6	ENSMUST00000181108.2	552	1	0	-1106	0	1106	mono-exon	FALSE	NA	NA	NA	NA	NA	1357	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACCCTCCCAGAAATGGT	NA	NA	NA	NA	NA	NA	NA	NA	74192991	74191333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_74191300_74193000
ONT_simulated_read_7183284	chr4	-	1194	7	ISM	ENSMUSG00000042446.17	ENSMUST00000106108.9	7102	30	57133	40641	57133	-40641	internal_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACTGTATGTGACCCACC	NA	NA	NA	NA	NA	NA	NA	NA	126804795	126796372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126796487_126798189_126798363_126799071_126799223_126799664_126799941_126800313_126800430_126800878_126801030_126804582
ONT_simulated_read_7183544	chr4	+	1630	4	FSM	ENSMUSG00000001333.10	ENST00000373484.4	1692	4	-14	76	2	-76	multi-exon	FALSE	canonical	NA	NA	NA	NA	300	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTAGGCTGCTGGTAC	NA	NA	NA	NA	NA	NA	NA	NA	129181423	129202031	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_129181582_129187019_129188170_129200134_129200260_129201834
ONT_simulated_read_7183650	chr17	-	1619	1	ISM	ENSMUSG00000092595.3	ENSMUST00000168978.3	3711	11	2557	1371	2557	-1371	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGATCTCTAAACCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	34247997	34246378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_34246400_34248000
ONT_simulated_read_7185551	chr9	-	1457	13	ISM	ENSMUSG00000032253.14	ENSMUST00000034787.12	10756	40	74712	13963	74712	-13963	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATATCCAGTAAGTATTT	NA	NA	NA	NA	NA	NA	NA	NA	82782857	82762174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_82762315_82763373_82763425_82763722_82763793_82766885_82767012_82768674_82768796_82769566_82769723_82772166_82772229_82772413_82772526_82775375_82775459_82775577_82775703_82776286_82776395_82778074_82778195_82782674
ONT_simulated_read_7186311	chr11	-	1980	8	ISM	ENSMUSG00000018541.11	ENSMUST00000018685.9	3105	10	8747	820	8731	-820	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTGACGGTGACCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	97648635	97637260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97638296_97638786_97638949_97641697_97641788_97643395_97643590_97644041_97644106_97644730_97644859_97646976_97647047_97648398
ONT_simulated_read_7187547	chr4	+	783	5	ISM	ENSMUSG00000043411.16	ENSMUST00000055131.13	5722	28	50134	1987	50134	-1987	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGACAAGATCTGCTAACCC	NA	NA	NA	NA	NA	NA	NA	NA	137371651	137383855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ONT_simulated_read_7190462	chr13	-	1699	1	ISM	ENSMUSG00000038982.11	ENSMUST00000035899.8	5634	5	31116	3454	31068	-3454	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACCTCCTAAATTCGTAC	NA	NA	NA	NA	NA	NA	NA	NA	38787969	38786270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_38786300_38788000
ONT_simulated_read_719152	chr14	+	2117	11	ISM	ENSMUSG00000054423.15	ENST00000283269.13	4561	28	-94	149148	0	56426	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGATGATGAACAAGATCGA	NA	NA	NA	NA	NA	NA	NA	NA	9646717	9947410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_9647460_9754367_9754482_9763918_9764252_9853616_9853698_9865907_9866142_9872271_9872394_9918849_9918962_9923339_9923480_9933375_9933443_9941181_9941291_9947347
ONT_simulated_read_719191	chr15	-	1419	8	ISM	ENSMUSG00000022378.15	ENSMUST00000164532.3	1770	12	53576	0	53576	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTGGTTTACTGAG	NA	NA	NA	NA	NA	NA	NA	NA	63816242	63802790	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171
ONT_simulated_read_7193213	chr18	-	1275	5	ISM	ENSMUSG00000024486.7	ENSMUST00000025363.7	2375	6	576	731	576	-731	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGCGCTCCACCATCT	NA	NA	NA	NA	NA	NA	NA	NA	36648282	36638710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_36639418_36639687_36639779_36640501_36640658_36645609_36645788_36648139
ONT_simulated_read_7198144	chr11	+	255	1	FSM	ENSMUSG00000084064.2	ENSMUST00000112483.3	244	1	0	-11	0	11	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGGTCTTTTCTGTGATT	NA	NA	NA	NA	NA	NA	NA	NA	27833111	27833366	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_27833100_27833400
ONT_simulated_read_719952	chr11	-	632	5	ISM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	75	1575	75	-1575	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGATGTCTGACTCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	117716843	117707926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_117708018_117712922_117713017_117715496_117715608_117716426_117716459_117716539
ONT_simulated_read_7200682	chr14	-	671	1	ISM	ENSMUSG00000021905.15	ENSMUST00000022461.11	1057	4	4370	3	4370	0	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCATGTTTTCTTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	31803196	31802525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_31802500_31803200
ONT_simulated_read_720249	chr7	+	204	1	ISM	ENSMUSG00000047721.9	ENSMUST00000130498.2	1266	3	0	1419	0	-1058	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGGGACCTCGGACC	NA	NA	NA	NA	NA	NA	NA	NA	126294607	126294811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_126294600_126294800
ONT_simulated_read_7202737	chr18	+	877	8	ISM	ENSMUSG00000024271.9	ENSMUST00000025120.8	2497	19	22223	260	14277	-260	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAACAGACGCGCACTGTG	NA	NA	NA	NA	NA	NA	NA	NA	24759242	24771607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
ONT_simulated_read_7206281	chr6	-	1391	10	ISM	ENSMUSG00000030353.16	ENSMUST00000130454.8	1718	12	4454	3893	4454	0	internal_fragment	TRUE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGAGGAGCTAGTTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	128248086	128205143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_128205443_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128228502_128228566_128228884_128228950_128247830
ONT_simulated_read_720629	chr9	-	1870	12	ISM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	3996	0	3995	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCTAGGTCATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	65788342	65740437	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172
ONT_simulated_read_7208755	chr9	-	1057	10	ISM	ENSMUSG00000032316.9	ENSMUST00000065330.8	2496	13	4851	1084	4851	-1084	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGATGAGAACAGCTCTGAT	NA	NA	NA	NA	NA	NA	NA	NA	57668292	57659075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106
ONT_simulated_read_7212729	chr5	+	445	4	ISM	ENSMUSG00000016833.15	ENSMUST00000016977.15	638	6	0	1354	0	-1294	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTAATCATAGAAATTTA	NA	NA	NA	NA	NA	NA	NA	NA	100946492	100950983	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_100946727_100947417_100947480_100949773_100949858_100950918
ONT_simulated_read_721584	chr3	+	460	3	ISM	ENSMUSG00000053897.16	ENSMUST00000029810.6	3203	8	58070	1552	58070	-1544	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGTAACTGGAAGACAAAC	NA	NA	NA	NA	NA	NA	NA	NA	135589920	135592595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_135590166_135590362_135590548_135592565
ONT_simulated_read_7216486	chr14	+	727	4	ISM	ENSMUSG00000021981.11	ENST00000355854.8	1720	9	67	41089	67	-41089	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTACACGGTGTCCTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	59716264	59743764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_59716634_59734251_59734394_59736992_59737158_59743713
ONT_simulated_read_722123	chr12	-	310	1	FSM	ENSMUSG00000079036.11	ENSMUST00000185301.2	408	1	0	98	0	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCCGACTGGGCCACCCGA	NA	NA	NA	NA	NA	NA	NA	NA	87490688	87490378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_87490400_87490700
ONT_simulated_read_7221759	chr16	+	692	4	ISM	ENSMUSG00000043336.15	ENSMUST00000099667.3	1576	5	0	2345	0	-2345	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAACCATAATGGAGATGG	NA	NA	NA	NA	NA	NA	NA	NA	57173639	57333708	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_57173822_57326961_57327218_57327911_57328086_57333628
ONT_simulated_read_7221832	chr11	+	808	6	ISM	ENSMUSG00000013483.15	ENST00000344227.6	3037	19	7035	13416	7035	-13416	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAACATGGTACAGGCTT	NA	NA	NA	NA	NA	NA	NA	NA	119214972	119222205	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_119215125_119216263_119216384_119216880_119217007_119217457_119217608_119219301_119219419_119222062
ONT_simulated_read_7222669	chr1	-	1885	12	ISM	ENSMUSG00000026082.12	ENSMUST00000027251.12	4262	23	50295	1328	50295	-1328	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAAGGAATGGCTTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	38118448	38093194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_38093377_38093825_38093947_38094371_38094606_38095344_38095548_38095797_38095964_38096754_38096858_38098202_38098376_38102195_38102417_38106580_38106701_38110423_38110579_38113395_38113525_38118370
ONT_simulated_read_7224295	chr10	-	1356	1	ISM	ENSMUSG00000048696.12	ENSMUST00000105350.3	3266	2	5068	881	5068	-881	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTCCTAGTGTACCCCT	NA	NA	NA	NA	NA	NA	NA	NA	80218425	80217069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80217100_80218400
ONT_simulated_read_7225733	chr14	-	1173	1	ISM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	132390	69	80567	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACTGGAATCAAATGCCGA	NA	NA	NA	NA	NA	NA	NA	NA	14519426	14518253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_14518300_14519400
ONT_simulated_read_7225856	chr4	-	1225	1	ISM	ENSMUSG00000045973.19	ENSMUST00000107796.8	4433	3	8602	3012	8601	306	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTACTTTGTCTCTGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	45400159	45398934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_45398900_45400200
ONT_simulated_read_7226877	chr19	+	2933	14	FSM	ENSMUSG00000024985.21	ENST00000538897.5	4114	14	511	670	0	-242	multi-exon	FALSE	canonical	NA	NA	NA	NA	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGCAAAACTTTTATGTG	NA	NA	NA	NA	NA	NA	NA	NA	55730763	55921419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_55730963_55731207_55731275_55731504_55731630_55743445_55743515_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55912961_55913013_55919865
ONT_simulated_read_722691	chr16	+	368	3	ISM	ENSMUSG00000005958.16	ENSMUST00000161063.9	4748	17	10591	736	10591	-736	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGGAGGTATAAAGAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	21040435	21040981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_21040527_21040614_21040809_21040898
ONT_simulated_read_7229365	chr5	-	601	1	FSM	ENSMUSG00000106558.2	ENSMUST00000197149.2	515	1	0	-86	0	86	mono-exon	FALSE	NA	NA	NA	NA	NA	654	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAATAATAGATCAAGCAC	NA	NA	NA	NA	NA	NA	NA	NA	30000035	29999434	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_29999400_3e+07
ONT_simulated_read_7232017	chr14	-	1680	7	ISM	ENSMUSG00000060373.16	ENSMUST00000164655.2	2843	8	19636	999	0	60	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTAGACCAGGCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	52321849	52311835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571
ONT_simulated_read_7234222	chr10	+	936	5	FSM	ENSMUSG00000035242.16	ENST00000582888.8	916	5	-2	-18	0	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGTGACCTATGCTATAG	NA	NA	NA	NA	NA	NA	NA	NA	80662526	80665028	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_80662740_80664076_80664217_80664294_80664468_80664544_80664631_80664704
ONT_simulated_read_7237309	chr5	-	722	8	ISM	ENSMUSG00000011831.17	ENST00000540033.2	2870	19	59361	42699	59361	-42699	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGCTGTCTGTGAAGAACA	NA	NA	NA	NA	NA	NA	NA	NA	107963547	107938306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_107938375_107943564_107943724_107945678_107945820_107946991_107947127_107958155_107958189_107960223_107960278_107961411_107961473_107963476
ONT_simulated_read_7240136	chr2	+	267	2	ISM	ENSMUSG00000027287.15	ENST00000567094.5	564	4	1092	122	1092	-122	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATCTTCATTTGTTATAA	NA	NA	NA	NA	NA	NA	NA	NA	120416721	120421533	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_120416758_120421302
ONT_simulated_read_72404	chr17	+	818	7	ISM	ENSMUSG00000116564.2	ENSMUST00000232396.2	1596	8	18	2150	18	-2150	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCGAGAATTCTTCATGA	NA	NA	NA	NA	NA	NA	NA	NA	17594851	17605866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842
ONT_simulated_read_724117	chr11	-	1210	8	ISM	ENSMUSG00000020530.15	ENSMUST00000172405.8	2950	14	9947	4342	9855	-3731	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGACTGTGGATATTCAT	NA	NA	NA	NA	NA	NA	NA	NA	84751617	84727528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370
ONT_simulated_read_7244247	chr5	-	860	1	ISM	ENSMUSG00000058291.15	ENSMUST00000110905.9	4749	6	13244	2006	13223	462	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACAGATCGGGTTAAATG	NA	NA	NA	NA	NA	NA	NA	NA	138604779	138603919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_138603900_138604800
ONT_simulated_read_7244327	chr7	-	1240	4	ISM	ENSMUSG00000030629.16	ENST00000558087.5	841	5	416	-570	398	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	84283202	84264261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_84265177_84267057_84267172_84281863_84281965_84283092
ONT_simulated_read_724716	chr4	-	408	1	ISM	ENSMUSG00000087381.9	ENSMUST00000126009.2	810	4	4746	172	-3052	-172	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCTCCTCAACTACACTC	NA	NA	NA	NA	NA	NA	NA	NA	156111333	156110925	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_156110900_156111300
ONT_simulated_read_7248011	chr1	-	488	6	ISM	ENSMUSG00000025909.17	ENST00000644093.1	1537	13	126106	81999	126094	-58	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCATCTGCTTTGACGCA	NA	NA	NA	NA	NA	NA	NA	NA	8748073	8515279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_8515344_8518203_8518357_8533617_8533690_8535660_8535778_8624948_8624988_8748030
ONT_simulated_read_7248109	chr11	-	1331	6	ISM	ENSMUSG00000078789.10	ENSMUST00000044949.11	2139	13	9574	0	9574	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTTTGGTGGAAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	75071771	75068468	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_75069214_75069750_75069858_75069998_75070140_75070551_75070631_75071386_75071488_75071613
ONT_simulated_read_7249739	chr14	+	386	1	Antisense	novelGene_ENSMUSG00000022223.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCAGCACCCAAGGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	56134845	56135231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr14_+_56134800_56135200
ONT_simulated_read_7251449	chrX	-	371	2	ISM	ENSMUSG00000033436.14	ENSMUST00000119010.8	3007	3	210	2552	210	-2550	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGACCTTGGGCCAGGATT	NA	NA	NA	NA	NA	NA	NA	NA	133708064	133707445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_133707763_133708010
ONT_simulated_read_7253616	chr10	+	927	11	NIC	ENSMUSG00000078427.4	novel	953	12	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	128657762	128713498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr10_+_128657841_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ONT_simulated_read_7254642	chr6	-	316	3	ISM	ENSMUSG00000030032.15	ENSMUST00000125894.9	1216	11	3001	91	3001	-91	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGGCTGAGATCCTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	83130378	83129781	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_83129879_83129956_83130032_83130234
ONT_simulated_read_7257577	chr11	-	1850	8	ISM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	11979	1673	11938	-20	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	125	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATGACAGGAAAAAAGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	20050934	20013976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822
ONT_simulated_read_7259297	chr6	-	2384	11	ISM	ENSMUSG00000061436.16	ENSMUST00000162359.8	3867	15	130206	-4	73595	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGTTAGTAACAAAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	38722651	38674814	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_38675532_38676186_38676351_38680373_38680622_38692874_38693157_38695688_38695869_38698389_38698533_38706855_38706978_38707803_38707931_38714292_38714456_38720010_38720196_38722598
ONT_simulated_read_7259374	chr7	-	477	5	ISM	ENSMUSG00000030516.15	ENST00000356107.11	6951	29	14461	44113	14461	-43661	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTGATAATGAAGACGAT	NA	NA	NA	NA	NA	NA	NA	NA	65163080	64990116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_64990175_64992364_64992468_64993362_64993488_65004579_65004637_65162946
ONT_simulated_read_7261436	chr12	+	1630	8	FSM	ENSMUSG00000021134.18	ENST00000394366.6	1613	8	30	-47	0	-6	multi-exon	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	80992293	80997271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
ONT_simulated_read_7261676	chr17	+	811	5	ISM	ENSMUSG00000044533.16	ENSMUST00000170715.8	998	6	0	275	0	-274	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTACAGCTACCTGACTCC	NA	NA	NA	NA	NA	NA	NA	NA	24939036	24940625	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940596
ONT_simulated_read_7263896	chr8	-	2453	15	ISM	ENSMUSG00000031696.10	ENSMUST00000034131.10	3474	17	9999	575	9999	-575	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATAATTGTTTAAGTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	86016432	85987595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334
ONT_simulated_read_7264020	chr7	-	860	6	ISM	ENSMUSG00000030881.16	ENSMUST00000209550.2	1141	8	1288	3	1288	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	339	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAACTTGGCTATCAAGA	NA	NA	NA	NA	NA	NA	NA	NA	105288235	105285434	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215
ONT_simulated_read_7265290	chr14	+	1080	9	ISM	ENSMUSG00000021993.11	ENSMUST00000063562.9	3015	19	65	93087	13	12025	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATCCTCAAAATTCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	61022086	61048591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_61022320_61024743_61024918_61025602_61025692_61028335_61028423_61033620_61033685_61039569_61039753_61040261_61040419_61046416_61046466_61048547
ONT_simulated_read_7266567	chr8	+	3154	19	NNC	ENSMUSG00000025812.19	novel	4949	23	NA	NA	51001	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAATAAAGGACATTTACC	NA	NA	NA	NA	NA	NA	NA	NA	128083791	128337286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_+_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036_128136099_128137212_128137255_128142050_128142279_128153002_128153235_128186754_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
ONT_simulated_read_727052	chr5	+	557	5	ISM	ENSMUSG00000029146.15	ENST00000537606.5	2312	14	70	3225	67	-2859	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGTCGCTGTCCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	31350637	31353385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31350810_31352139_31352258_31352758_31352824_31353089_31353201_31353294
ONT_simulated_read_7270693	chr6	+	2053	9	ISM	ENSMUSG00000046679.17	ENSMUST00000113698.8	2922	10	5086	251	5086	-251	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCGGGCACTTATTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	86420794	86447119	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_86420958_86422415_86423251_86424322_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562_86439664_86442782_86442946_86446727
ONT_simulated_read_7274343	chr2	+	1067	10	ISM	ENSMUSG00000039254.17	ENSMUST00000036473.16	2918	20	53	9376	53	-8811	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTTGCCCTGCTGGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	32126654	32135641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_32126754_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558
ONT_simulated_read_7274630	chr14	-	329	1	NIC	ENSMUSG00000097589.10	novel	1442	5	NA	NA	13067	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGGCTTATACATTTC	NA	NA	NA	NA	NA	NA	NA	NA	61873004	61872675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_61872700_61873000
ONT_simulated_read_7275816	chr11	-	4726	1	ISM	ENSMUSG00000044847.14	ENSMUST00000129820.8	6453	4	10912	1029	10912	-1029	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCACCTGTGTCTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	45824850	45820124	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_45820100_45824800
ONT_simulated_read_7276271	chr7	-	332	1	ISM	ENSMUSG00000030423.8	ENSMUST00000032585.8	2113	7	8116	980	8116	-980	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCACAGGGAGGAAAGACTA	NA	NA	NA	NA	NA	NA	NA	NA	37962731	37962399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_37962400_37962700
ONT_simulated_read_7276366	chr8	+	796	7	ISM	ENSMUSG00000038005.16	ENSMUST00000037190.15	1191	8	38	1973	38	-1968	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCATTCGCTCCCATTCAG	NA	NA	NA	NA	NA	NA	NA	NA	61343522	61358641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61353117_61353269_61357033_61357122_61358581
ONT_simulated_read_7276466	chr1	-	664	6	ISM	ENSMUSG00000042699.12	ENST00000436565.2	3103	24	19471	1125	-3988	-1125	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGAAGAGACTCAATATGG	NA	NA	NA	NA	NA	NA	NA	NA	153340125	153335175	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_153335212_153335303_153335466_153336023_153336136_153336727_153336889_153338297_153338451_153340085
ONT_simulated_read_7280066	chr4	-	755	1	ISM	ENSMUSG00000019055.16	ENSMUST00000019199.14	3243	19	25918	342	25876	-342	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGACGAGAGTTCTATTAAA	NA	NA	NA	NA	NA	NA	NA	NA	147995306	147994551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_147994600_147995300
ONT_simulated_read_7280550	chr1	-	851	4	ISM	ENSMUSG00000040181.15	ENST00000402921.6	1561	8	30316	89	23681	-89	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	204	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCTTCCTTTGAAACTTT	NA	NA	NA	NA	NA	NA	NA	NA	162663857	162657618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_162657884_162660531_162660605_162661098_162661455_162663700
ONT_simulated_read_7281986	chr4	-	1315	8	ISM	ENSMUSG00000028484.17	ENSMUST00000107214.9	1973	11	10033	190	10033	-190	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAACTGGAGTAGCTATTA	NA	NA	NA	NA	NA	NA	NA	NA	83394657	83380297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_83380791_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518
ONT_simulated_read_7285257	chr1	+	684	3	ISM	ENSMUSG00000026708.17	ENSMUST00000111620.10	1910	5	249	7941	249	-7941	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACTTCAACATCAAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	160898585	160905967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_160898927_160902326_160902501_160905798
ONT_simulated_read_7286074	chr11	+	425	2	ISM	ENSMUSG00000020829.10	ENST00000618626.1	1254	4	-76	4915	53	-4915	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGGTGCAGCTAGAACTG	NA	NA	NA	NA	NA	NA	NA	NA	78356575	78357345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_78356832_78357176
ONT_simulated_read_7286212	chr11	-	1958	12	ISM	ENSMUSG00000020516.16	ENST00000393021.7	5314	17	11986	3018	11906	323	internal_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCTGTGGCTTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	86423666	86392858	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597
ONT_simulated_read_7288372	chr5	-	1585	1	ISM	ENSMUSG00000029426.9	ENSMUST00000031377.9	4698	12	61372	1367	61372	-1367	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATTAGAAGTAAAACATTG	NA	NA	NA	NA	NA	NA	NA	NA	92592124	92590539	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_92590500_92592100
ONT_simulated_read_7289569	chr6	+	525	1	FSM	ENSMUSG00000060032.7	ENSMUST00000074556.7	1831	1	0	1306	0	-1025	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCCAATAAAGTCGGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	136785241	136785766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_136785200_136785800
ONT_simulated_read_7290762	chr5	-	460	3	ISM	ENSMUSG00000029416.18	ENSMUST00000031367.15	2732	8	8388	8491	8388	-8491	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGATTCCAGAAATCTCA	NA	NA	NA	NA	NA	NA	NA	NA	127686092	127681218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_127681253_127681601_127681771_127685835
ONT_simulated_read_7290874	chr2	+	641	2	ISM	ENSMUSG00000027424.12	ENSMUST00000028910.9	2840	5	41	8804	0	-8093	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTGGAAAGAGCGGATGGT	NA	NA	NA	NA	NA	NA	NA	NA	144112860	144114343	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_144112993_144113834
ONT_simulated_read_7292819	chr18	-	1628	1	NIC	ENSMUSG00000024566.11	novel	5357	30	NA	NA	181730	-133	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTGCCCCTCAGGATG	NA	NA	NA	NA	NA	NA	NA	NA	80779365	80777737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_80777700_80779400
ONT_simulated_read_7293152	chr16	+	1184	3	ISM	ENSMUSG00000022961.19	ENSMUST00000114036.9	7945	5	12063	1157	12058	-1157	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCTTTTGGGGGAAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	91456830	91459764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_91457469_91458988_91459150_91459379
ONT_simulated_read_7294648	chr1	-	502	1	FSM	ENSMUSG00000082935.4	ENSMUST00000119064.2	1124	1	0	622	0	-622	mono-exon	FALSE	NA	NA	NA	NA	NA	804	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGAGGCGTTTGTGGATT	NA	NA	NA	NA	NA	NA	NA	NA	21583280	21582778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_21582800_21583300
ONT_simulated_read_729465	chr15	+	1435	13	ISM	ENSMUSG00000022550.19	ENSMUST00000160784.8	1998	15	16	713	16	-713	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTACATGCAGGACATGGCC	NA	NA	NA	NA	NA	NA	NA	NA	76460604	76479303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213
ONT_simulated_read_7295276	chr9	+	703	4	ISM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	3744	770	3744	-770	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAGGAGGGCCTAATCAT	NA	NA	NA	NA	NA	NA	NA	NA	35126194	35127540	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_35126328_35126762_35126927_35127010_35127110_35127233
ONT_simulated_read_7297914	chr7	-	702	5	FSM	ENSMUSG00000002068.17	ENST00000357943.9	1168	5	16	450	16	-450	multi-exon	FALSE	canonical	NA	NA	NA	NA	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGCAGATGCTGTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	37800112	37797859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_37798063_37798416_37798575_37798671_37798784_37799213_37799310_37799979
ONT_simulated_read_7298128	chr18	+	286	3	ISM	ENSMUSG00000024258.5	ENSMUST00000025106.5	1015	4	1	1394	0	-1182	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATAAGTTTGAGTTGGCC	NA	NA	NA	NA	NA	NA	NA	NA	31922212	31928360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_31922298_31924892_31925074_31928340
ONT_simulated_read_7298220	chr11	+	795	2	FSM	ENSMUSG00000020849.14	ENST00000573026.1	799	2	4	0	4	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTGGCTGCTCATTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	75623786	75656109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_75623918_75655445
ONT_simulated_read_73006	chr6	-	1622	12	ISM	ENSMUSG00000030067.18	ENST00000648748.2	2438	16	86626	-57	18201	54	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGTCAAAAGTTAGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	98987018	98906949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_98907196_98912234_98912402_98916679_98916750_98918496_98918619_98921579_98921682_98922307_98922385_98922494_98922697_98931281_98931366_98942987_98943076_98955093_98955199_98980160_98980366_98986864
ONT_simulated_read_7303807	chr7	-	1600	1	ISM	ENSMUSG00000039428.12	ENSMUST00000041968.11	3700	15	196823	651	196796	-651	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCTGCTTGGTAACACAT	NA	NA	NA	NA	NA	NA	NA	NA	88791172	88789572	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_88789600_88791200
ONT_simulated_read_7303905	chr13	-	502	1	ISM	ENSMUSG00000015937.16	ENSMUST00000016081.13	2046	9	61266	245	54087	-242	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTGCGTTGCGCTGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	56222178	56221676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_56221700_56222200
ONT_simulated_read_7306032	chr8	-	744	7	ISM	ENSMUSG00000037300.20	ENST00000366662.8	2749	21	12036	12829	12016	-12829	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCAGCTTCAAGGACCACT	NA	NA	NA	NA	NA	NA	NA	NA	125436687	125411303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125436641
ONT_simulated_read_7306213	chr5	-	993	7	ISM	ENSMUSG00000035325.17	ENST00000509142.5	3837	26	33320	2238	25204	-1844	internal_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCACCTCATCCTAAAGAC	NA	NA	NA	NA	NA	NA	NA	NA	100530767	100511755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_100511807_100513589_100513854_100516152_100516212_100523066_100523191_100526686_100526861_100529018_100529193_100530620
ONT_simulated_read_7306986	chr7	-	268	1	ISM	ENSMUSG00000030871.12	ENSMUST00000033159.4	2046	9	0	28175	0	-28175	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCGGGCACCGCGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	121666486	121666218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_121666200_121666500
ONT_simulated_read_7308761	chrX	-	1074	6	ISM	ENSMUSG00000025656.18	ENST00000636926.1	1946	10	53880	3907	53478	-3907	internal_fragment	FALSE	canonical	NA	NA	NA	NA	961	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAAAATGGTACAAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	94156147	94102454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_94102667_94114778_94114911_94121044_94121175_94125083_94125317_94144562_94144743_94155960
ONT_simulated_read_7309757	chr19	-	594	2	ISM	ENSMUSG00000025016.12	ENSMUST00000237871.2	3170	15	46803	831	46803	-831	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTTACTGCCATTGT	NA	NA	NA	NA	NA	NA	NA	NA	41205616	41203061	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_41203579_41205539
ONT_simulated_read_7310388	chr2	+	271	1	ISM	ENSMUSG00000027602.10	ENSMUST00000029128.4	1112	4	0	1506	0	-1506	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGAGCCCCGGCTGCGC	NA	NA	NA	NA	NA	NA	NA	NA	155118216	155118487	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_155118200_155118500
ONT_simulated_read_731203	chr3	+	760	8	FSM	ENSMUSG00000078578.10	ENST00000349311.12	842	8	82	0	-36	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATCTGAGAAGACTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	135144289	135171152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_135144324_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ONT_simulated_read_7313024	chrX	-	921	1	ISM	ENSMUSG00000031357.4	ENSMUST00000033723.4	2087	9	30470	0	30470	0	mono-exon	FALSE	NA	NA	NA	NA	NA	181	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTTATAGAATGGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	161640973	161640052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_161640100_161641000
ONT_simulated_read_7314279	chr11	+	1299	9	ISM	ENSMUSG00000009090.18	ENSMUST00000009234.16	4085	21	110	18324	110	-17361	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTAGGTTCTGAGAATC	NA	NA	NA	NA	NA	NA	NA	NA	4936933	4974467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_4937052_4959529_4959593_4962881_4962988_4965605_4965742_4966605_4966852_4968015_4968207_4969280_4969503_4973096_4973218_4974371
ONT_simulated_read_7317745	chr11	-	1282	1	ISM	ENSMUSG00000048076.15	ENSMUST00000163300.8	1991	5	15467	2	15037	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4523	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	59103521	59102239	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_59102200_59103500
ONT_simulated_read_7318718	chr1	-	700	6	ISM	ENSMUSG00000037351.10	ENSMUST00000043951.10	3248	11	8107	1953	8107	-1953	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGTGGACATACTGGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	36740982	36739147	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765
ONT_simulated_read_7319794	chr11	-	1214	9	ISM	ENSMUSG00000020792.16	ENST00000411744.6	1975	18	1408	5223	1407	-4198	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTTACTCAGTCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	116195875	116185231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116187555_116187625_116191091_116191260_116191929_116192153_116195402_116195509_116195689
ONT_simulated_read_7320009	chr11	-	440	3	ISM	ENSMUSG00000020832.15	ENSMUST00000021183.4	2014	10	5781	565	5781	-565	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTTTCCATTGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	77965428	77964766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_77965001_77965105_77965187_77965303
ONT_simulated_read_7321589	chr17	-	116	1	ISM	ENSMUSG00000023943.8	ENSMUST00000024738.8	1556	8	28490	454	2576	0	mono-exon	FALSE	NA	NA	NA	NA	NA	408	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGGGTAGAGGGAATCC	NA	NA	NA	NA	NA	NA	NA	NA	54269212	54269096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_54269100_54269200
ONT_simulated_read_7325193	chr7	+	848	1	Antisense	novelGene_ENSMUSG00000045114.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	273	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGCTGTAAACAAGGCC	NA	NA	NA	NA	NA	NA	NA	NA	126616898	126617746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr7_+_126616900_126617700
ONT_simulated_read_7326726	chr3	-	770	6	ISM	ENSMUSG00000028064.18	ENST00000355014.6	2827	13	3007	2351	3007	-2351	internal_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGAGGCATCTGGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	88357420	88345627	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_88345648_88345749_88345869_88348004_88348186_88355297_88355449_88356986_88357160_88357294
ONT_simulated_read_732778	chr11	+	568	2	ISM	ENSMUSG00000018378.14	ENSMUST00000018522.13	3180	11	0	24206	0	-24206	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGCTCAACAACAGCCG	NA	NA	NA	NA	NA	NA	NA	NA	87989971	88060760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_87990170_88060390
ONT_simulated_read_7328410	chr1	-	453	3	ISM	ENSMUSG00000013698.13	ENSMUST00000013842.12	2501	4	6222	1841	6222	-1841	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	206	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAATGGGAGGGGCTAGG	NA	NA	NA	NA	NA	NA	NA	NA	172028149	172026135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_172026258_172026677_172026834_172027974
ONT_simulated_read_73287	chr10	+	817	1	FSM	ENSMUSG00000053830.5	ENSMUST00000217785.2	1836	1	0	1019	0	-1019	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTCAAAGGGATACGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	72145150	72145967	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_72145200_72146000
ONT_simulated_read_7330139	chr17	+	861	3	Fusion	ENSMUSG00000073411.13_ENSMUSG00000073409.13	novel	2102	8	NA	NA	0	-2657	multi-exon	FALSE	canonical	NA	NA	NA	NA	514	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGACATGGCTGCACAGAT	NA	NA	NA	NA	NA	NA	NA	NA	35481705	35644680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Fusion_chr17_+_35482163_35482354_35482625_35644546
ONT_simulated_read_7330958	chr9	-	1368	1	ISM	ENSMUSG00000041268.18	ENSMUST00000118163.8	10614	44	134999	102	134828	0	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTTAGTTTGGCCTATT	NA	NA	NA	NA	NA	NA	NA	NA	54273911	54272543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_54272500_54273900
ONT_simulated_read_7333626	chr6	-	518	4	ISM	ENSMUSG00000030243.17	ENSMUST00000111803.9	3389	15	12160	7135	12109	-7135	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCAAGCTAATTAATGGAC	NA	NA	NA	NA	NA	NA	NA	NA	142320653	142314236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_142314281_142315016_142315184_142318541_142318741_142320545
ONT_simulated_read_7335578	chr7	-	852	4	ISM	ENSMUSG00000030421.10	ENSMUST00000085513.6	3441	11	53991	1559	31171	-607	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCAGAGCTGCCCGATT	NA	NA	NA	NA	NA	NA	NA	NA	37664976	37660975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_37661123_37661890_37662135_37662817_37662958_37664655
ONT_simulated_read_733905	chr5	-	294	1	NIC	ENSMUSG00000072845.4	novel	2657	9	NA	NA	19987	0	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTTATTTCAGAATCGCA	NA	NA	NA	NA	NA	NA	NA	NA	86559783	86559489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_86559500_86559800
ONT_simulated_read_7339828	chr1	-	788	5	NNC	ENSMUSG00000014226.11	novel	998	6	NA	NA	3	-1066	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATAGCAGATTCTCCAT	NA	NA	NA	NA	NA	NA	NA	NA	160036159	160031002	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035957
ONT_simulated_read_7340010	chr1	-	2377	1	NIC	ENSMUSG00000041779.6	novel	6492	11	NA	NA	77593	943	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGAAAAGCCTGAGACCAA	NA	NA	NA	NA	NA	NA	NA	NA	21071860	21069483	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_21069500_21071900
ONT_simulated_read_7345597	chr8	-	1345	2	ISM	ENSMUSG00000031821.12	ENSMUST00000034278.6	3900	5	7096	1961	7096	-1961	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGACATGGTCAAGGACT	NA	NA	NA	NA	NA	NA	NA	NA	121308947	121307332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_121308551_121308820
ONT_simulated_read_7346716	chr6	-	1728	1	ISM	ENSMUSG00000107768.2	ENSMUST00000203442.2	2519	4	5171	508	5171	-508	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAACCACCGAACAACTTC	NA	NA	NA	NA	NA	NA	NA	NA	135291388	135289660	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_135289700_135291400
ONT_simulated_read_7349017	chr4	-	1160	8	ISM	ENSMUSG00000028345.16	ENSMUST00000164866.2	3203	16	14728	0	11372	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCCTGTTTGAAGTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	48458694	48430955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537
ONT_simulated_read_7354533	chr7	-	190	1	NIC	ENSMUSG00000036751.8	novel	618	4	NA	NA	8951	0	mono-exon	FALSE	NA	NA	NA	NA	NA	201	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATTGTGTGTATTACAC	NA	NA	NA	NA	NA	NA	NA	NA	30316588	30316398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_30316400_30316600
ONT_simulated_read_7357648	chr17	-	720	4	ISM	ENSMUSG00000024197.11	ENST00000592528.5	1220	6	2232	235	2232	-235	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGGCACAGCAGGCCCGC	NA	NA	NA	NA	NA	NA	NA	NA	56591417	56586964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132
ONT_simulated_read_73599	chr19	-	438	1	FSM	ENSMUSG00000117706.2	ENSMUST00000237236.2	111	1	0	-327	0	327	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCGTCTCCTGTTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	42367540	42367102	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_42367100_42367500
ONT_simulated_read_7360251	chr19	-	1243	9	NIC	ENSMUSG00000024941.10	novel	2731	17	NA	NA	9624	-58	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAGGTCAGGCACATCTA	NA	NA	NA	NA	NA	NA	NA	NA	5811804	5808512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809368_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680
ONT_simulated_read_7361417	chr14	+	916	6	ISM	ENSMUSG00000023411.13	ENST00000554661.5	2585	9	1180	1949	1180	-1949	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCAGCGGTGAACCGACT	NA	NA	NA	NA	NA	NA	NA	NA	56064494	56069132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_56064711_56066059_56066223_56066821_56067022_56067350_56067524_56067912_56068054_56069109
ONT_simulated_read_7364576	chr4	+	715	5	ISM	ENSMUSG00000046861.10	ENST00000372168.7	1866	13	4014	-1	4014	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGGTTTCCCCCATTC	NA	NA	NA	NA	NA	NA	NA	NA	116859737	116860865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_116859837_116859933_116860009_116860130_116860213_116860315_116860388_116860478
ONT_simulated_read_7365291	chr17	-	344	1	ISM	ENSMUSG00000062078.16	ENSMUST00000042296.9	6737	7	105223	3635	104716	1617	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAAGTTAAGGTTAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	10433086	10432742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_10432700_10433100
ONT_simulated_read_7366904	chr11	-	586	2	ISM	ENSMUSG00000020614.14	ENSMUST00000020938.8	2541	11	47573	114	47573	-114	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTCTGAGCACACTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	109565509	109563865	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_109564391_109565448
ONT_simulated_read_7367978	chr1	-	246	1	ISM	ENSMUSG00000060743.13	ENSMUST00000161308.8	2841	4	10461	2094	9653	98	mono-exon	FALSE	NA	NA	NA	NA	NA	309	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTATTGGCGTTTCTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	180630736	180630490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_180630500_180630700
ONT_simulated_read_7370192	chr8	-	614	1	ISM	ENSMUSG00000034105.10	ENSMUST00000049156.7	3085	8	16626	1101	16626	-1101	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTTGTAGCTGAAGATCT	NA	NA	NA	NA	NA	NA	NA	NA	120488529	120487915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_120487900_120488500
ONT_simulated_read_7372166	chr12	+	1678	7	ISM	ENSMUSG00000021012.17	ENSMUST00000057000.17	3046	14	13391	142	-10648	-142	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAACTAAATAACAGACAAC	NA	NA	NA	NA	NA	NA	NA	NA	98726632	98753864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_98726670_98730081_98730238_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
ONT_simulated_read_7376208	chr8	+	517	2	ISM	ENSMUSG00000052794.14	ENSMUST00000121902.2	2373	8	-52	15485	0	-15485	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGTACCCACACAGAACT	NA	NA	NA	NA	NA	NA	NA	NA	73197723	73199000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_73197834_73198593
ONT_simulated_read_737764	chr4	-	2037	21	ISM	ENSMUSG00000028559.18	ENSMUST00000160774.8	2765	23	68429	504	-15752	-72	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTCCTATCTCAGGGAT	NA	NA	NA	NA	NA	NA	NA	NA	108990985	108919355	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940
ONT_simulated_read_7380011	chr11	-	718	6	ISM	ENSMUSG00000020451.18	ENSMUST00000110029.9	2939	12	273	6136	273	-4630	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTCCTACCAGCAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	3305868	3300391	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810
ONT_simulated_read_7381335	chr14	-	1078	6	FSM	ENSMUSG00000060373.16	ENST00000556142.5	1438	6	0	360	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	NA	NA	NA	NA	NA	NA	NA	NA	52321849	52312255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_52312618_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571
ONT_simulated_read_7383085	chr3	-	1231	1	ISM	ENSMUSG00000001052.16	ENSMUST00000001079.15	5128	24	76918	0	76735	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGGAGTGCAATTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	129777638	129776407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_129776400_129777600
ONT_simulated_read_7383826	chr2	-	255	1	FSM	ENSMUSG00000081087.2	ENSMUST00000117430.2	392	1	0	137	0	-137	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAGAAATGGCAGAACAAC	NA	NA	NA	NA	NA	NA	NA	NA	152027602	152027347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_152027300_152027600
ONT_simulated_read_7384444	chr11	-	289	4	ISM	ENSMUSG00000020462.15	ENSMUST00000020754.10	1664	10	16735	1307	16735	-1307	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGATGGAGTTGTTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	29180674	29172838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_29172884_29175856_29175960_29179907_29179960_29180585
ONT_simulated_read_7384517	chr15	+	545	1	FSM	ENSMUSG00000096210.3	ENSMUST00000180086.3	2055	1	0	1510	0	-1510	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCAGGCTGGCCAAGGG	NA	NA	NA	NA	NA	NA	NA	NA	78912649	78913194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_78912600_78913200
ONT_simulated_read_7384679	chr5	+	955	6	ISM	ENSMUSG00000029004.16	ENSMUST00000115128.8	7317	27	63820	2395	63820	-2395	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTACCTCTCGCCAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	23703266	23706838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_23703293_23704279_23704591_23705253_23705343_23705448_23705575_23705724_23705811_23706521
ONT_simulated_read_7384687	chr11	-	1127	8	ISM	ENSMUSG00000017405.15	ENSMUST00000017549.13	2809	15	5905	1054	5905	-1054	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTCGATGTGAGTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	78061596	78057985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438
ONT_simulated_read_7385816	chr4	+	1627	15	ISM	ENSMUSG00000028330.9	ENSMUST00000030014.9	3010	23	0	9429	0	-9429	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATATATTAGATATTGTT	NA	NA	NA	NA	NA	NA	NA	NA	46138612	46162974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_46138887_46144784_46144874_46145373_46145475_46147378_46147536_46149861_46149970_46150638_46150761_46152015_46152086_46152909_46153126_46155749_46155848_46156759_46156824_46157822_46157934_46159658_46159724_46161260_46161324_46162091_46162167_46162960
ONT_simulated_read_7386100	chr17	-	431	4	ISM	ENSMUSG00000096727.4	ENST00000374859.3	702	6	2902	138	2902	-138	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGGGGTGTCATCTACCT	NA	NA	NA	NA	NA	NA	NA	NA	34403382	34401293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_34401326_34402062_34402205_34402588_34402719_34403255
ONT_simulated_read_7387632	chr11	+	563	3	FSM	ENSMUSG00000037857.17	ENST00000579665.1	562	3	0	-1	0	1	multi-exon	FALSE	canonical	NA	NA	NA	NA	1222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATATATACATATATATA	NA	NA	NA	NA	NA	NA	NA	NA	77576997	77600702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_77577334_77596334_77596368_77600508
ONT_simulated_read_7389166	chr2	-	651	1	ISM	ENSMUSG00000027070.15	ENST00000649046.1	15320	79	160150	813	160150	-810	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTGTCAACCTGATTAGTA	NA	NA	NA	NA	NA	NA	NA	NA	69256144	69255493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_69255500_69256100
ONT_simulated_read_7390081	chr5	-	260	3	ISM	ENSMUSG00000046562.6	ENSMUST00000060798.6	3659	5	4444	4551	4444	-4551	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGACTTTGATTTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	115268590	115265159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_115265243_115265360_115265473_115268525
ONT_simulated_read_7392847	chr6	+	387	5	NIC	ENSMUSG00000030269.15	novel	365	5	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTCCTGTCCCTAACAGG	NA	NA	NA	NA	NA	NA	NA	NA	113232792	113246521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_+_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113246461
ONT_simulated_read_7397604	chr16	+	1594	13	ISM	ENSMUSG00000118669.2	ENSMUST00000239547.1	4232	17	7357	1226	7319	-411	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAGGTCCCCATGCACAG	NA	NA	NA	NA	NA	NA	NA	NA	18217837	18224595	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_18217896_18218405_18218524_18218834_18219004_18220316_18220389_18221357_18221486_18221649_18221801_18222075_18222275_18222377_18222490_18222583_18222672_18222884_18222939_18223209_18223296_18223851_18223972_18224356
ONT_simulated_read_7398227	chr2	-	1934	6	ISM	ENSMUSG00000039536.17	ENSMUST00000109238.9	2976	12	43824	0	43662	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGTCTTTTTCCAATT	NA	NA	NA	NA	NA	NA	NA	NA	166794361	166790066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245
ONT_simulated_read_7399310	chr8	-	262	1	ISM	ENSMUSG00000039509.9	ENSMUST00000044795.8	5808	26	49770	2111	49770	-2111	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCCGCGATATAAAAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	124626234	124625972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_124626000_124626200
ONT_simulated_read_7400765	chr8	-	703	1	ISM	ENSMUSG00000031508.15	ENSMUST00000169782.3	5156	5	22827	645	22681	-644	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACAGTTGGGCATCGCTC	NA	NA	NA	NA	NA	NA	NA	NA	11662930	11662227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_11662200_11662900
ONT_simulated_read_7401128	chr4	-	998	6	ISM	ENSMUSG00000043962.17	ENST00000469141.6	3074	11	18948	71	18948	-71	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	232	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGTGGAGCTAAACAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	126069240	126059137	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128
ONT_simulated_read_740563	chr13	-	782	1	ISM	ENSMUSG00000097715.3	ENSMUST00000220758.2	1942	7	34550	0	34448	0	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATTTTGTAGAGTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	12630727	12629945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_12629900_12630700
ONT_simulated_read_7405792	chr12	-	784	7	ISM	ENSMUSG00000021069.18	ENST00000544180.6	2625	19	30095	266	30095	-266	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAACAATTAAGGAGTATGC	NA	NA	NA	NA	NA	NA	NA	NA	70244278	70237864	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_70237931_70240512_70240580_70241006_70241142_70242277_70242486_70243744_70243887_70243991_70244051_70244171
ONT_simulated_read_7407354	chr7	-	1381	2	ISM	ENSMUSG00000048787.14	ENSMUST00000106519.8	1475	3	36421	-158	35673	158	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTCAGTTTTGCATATTA	NA	NA	NA	NA	NA	NA	NA	NA	119459093	119456389	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_119457280_119458602
ONT_simulated_read_7408522	chr2	-	736	5	ISM	ENSMUSG00000037110.21	ENST00000202677.12	5729	38	80059	152416	79948	-152416	internal_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCACCTCTGACATCACT	NA	NA	NA	NA	NA	NA	NA	NA	146273871	146254701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_146254789_146263512_146263678_146266536_146266775_146270524_146270637_146273737
ONT_simulated_read_7409284	chr11	-	1551	7	ISM	ENSMUSG00000042302.15	ENST00000405015.7	3771	22	116698	88817	116664	-88817	internal_fragment	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTCCACTCTCAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	22119174	22045597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_22046200_22050421_22050471_22051051_22051231_22087837_22088058_22096462_22096701_22101066_22101190_22119034
ONT_simulated_read_7410545	chr19	-	648	4	ISM	ENSMUSG00000057506.6	ENSMUST00000079033.6	885	5	408	130	405	-130	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGGGACCTGTTTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	44134477	44127827	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_44128153_44130562_44130668_44131459_44131580_44134379
ONT_simulated_read_7411840	chr11	-	577	1	ISM	ENSMUSG00000059923.14	ENSMUST00000106499.8	2333	4	53424	1262	53424	436	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCCCAGGGGTACCGCCT	NA	NA	NA	NA	NA	NA	NA	NA	115536709	115536132	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115536100_115536700
ONT_simulated_read_741219	chr13	-	1394	7	ISM	ENSMUSG00000021432.16	ENSMUST00000167513.3	1778	10	15898	-169	15898	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGGTGGGAAGAACTTAC	NA	NA	NA	NA	NA	NA	NA	NA	39128607	39116111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39128475
ONT_simulated_read_741668	chr11	-	976	10	ISM	ENSMUSG00000025580.16	ENSMUST00000026667.15	1509	12	2211	372	2211	-372	internal_fragment	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGATGACATCCGGATT	NA	NA	NA	NA	NA	NA	NA	NA	119188704	119179560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630
ONT_simulated_read_7420193	chr7	-	733	3	ISM	ENSMUSG00000063550.9	ENST00000324932.12	6615	33	75166	10601	74881	4200	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCCCAGCGAATACATTCA	NA	NA	NA	NA	NA	NA	NA	NA	101784193	101779209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_101779290_101781838_101782069_101783770
ONT_simulated_read_7420738	chr11	-	767	4	ISM	ENSMUSG00000020286.14	ENSMUST00000239488.2	1002	5	219	108	219	-108	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAGAACTGTGCAAAATT	NA	NA	NA	NA	NA	NA	NA	NA	23468976	23466310	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_23466611_23467211_23467381_23468040_23468143_23468780
ONT_simulated_read_7426518	chr5	-	1538	10	ISM	ENSMUSG00000039987.16	ENST00000275575.11	4407	16	60717	2175	60717	-2175	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCAGAATGTATTGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	20999480	20965941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_20966074_20966661_20966788_20969211_20969308_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987490_20994626_20994783_20999292
ONT_simulated_read_7426523	chr13	+	1249	4	ISM	ENSMUSG00000021326.14	ENSMUST00000222544.2	4312	9	0	10931	0	-9058	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGAGCATGAGTACCGCC	NA	NA	NA	NA	NA	NA	NA	NA	21363614	21367963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_21363727_21364105_21365085_21366153_21366250_21367901
ONT_simulated_read_7429392	chr5	-	609	1	ISM	ENSMUSG00000042726.15	ENSMUST00000042312.14	2503	12	13235	64	13174	-59	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTACTGTTCTAATT	NA	NA	NA	NA	NA	NA	NA	NA	121510460	121509851	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_121509900_121510500
ONT_simulated_read_7430720	chr9	-	1091	9	ISM	ENSMUSG00000032340.9	ENST00000560262.5	4348	28	122865	16726	122865	-16726	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCTGCTGGTCATCATT	NA	NA	NA	NA	NA	NA	NA	NA	58820612	58801260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_58801306_58806447_58806517_58809365_58809399_58810196_58810392_58811726_58811835_58813932_58814072_58814153_58814378_58815686_58815783_58820430
ONT_simulated_read_7431418	chr9	+	689	6	FSM	ENSMUSG00000032388.8	ENST00000416889.6	1042	6	16	337	16	-337	multi-exon	TRUE	canonical	NA	NA	NA	NA	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCGATCCGTCAGTGGTC	NA	NA	NA	NA	NA	NA	NA	NA	65376070	65394151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_65376219_65383121_65383268_65387660_65387770_65389142_65389251_65391723_65391865_65394114
ONT_simulated_read_7432590	chr15	+	951	8	ISM	ENSMUSG00000022558.17	ENST00000528919.5	4888	40	56824	61	56824	-61	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGAGTGCGGGAGAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	76334827	76337054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76334954_76335261_76335409_76335546_76335736_76336004_76336161_76336243_76336379_76336446_76336550_76336627_76336694_76337025
ONT_simulated_read_7433413	chrX	-	558	2	ISM	ENSMUSG00000031310.17	ENSMUST00000117901.8	5178	24	13790	966	13790	-966	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTGATGATAGCTCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	100449614	100448955	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_100449410_100449510
ONT_simulated_read_7433631	chr7	-	1730	5	ISM	ENSMUSG00000035354.10	ENSMUST00000037968.10	5157	15	152896	2241	152896	-2241	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTCTAGTGTGCCATAC	NA	NA	NA	NA	NA	NA	NA	NA	98637452	98536468	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_98537800_98555698_98555791_98589097_98589177_98628842_98629009_98637390
ONT_simulated_read_7433808	chr4	-	2043	9	ISM	ENSMUSG00000028559.18	ENSMUST00000084366.13	3134	21	49513	0	49513	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGACTGCAGTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	108925706	108918341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559
ONT_simulated_read_7435466	chr13	-	742	1	ISM	ENSMUSG00000021557.16	ENSMUST00000022040.14	8174	26	107571	3257	94699	711	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAGTCACTTCTAAACCC	NA	NA	NA	NA	NA	NA	NA	NA	59597554	59596812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_59596800_59597600
ONT_simulated_read_7435592	chr2	-	1424	6	ISM	ENSMUSG00000023224.13	ENSMUST00000023994.10	1768	8	1771	216	1241	-32	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCGTGTATATGACCCC	NA	NA	NA	NA	NA	NA	NA	NA	84603977	84595946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_84596172_84597618_84597839_84600117_84600255_84600436_84600641_84601768_84601904_84603474
ONT_simulated_read_7435677	chr1	-	1017	10	ISM	ENSMUSG00000006010.15	ENSMUST00000111913.9	3273	14	8559	1499	8198	-283	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATCACGGATCAACAGCT	NA	NA	NA	NA	NA	NA	NA	NA	150260272	150238554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179
ONT_simulated_read_7439501	chr2	+	702	1	ISM	ENSMUSG00000047907.12	ENSMUST00000109159.3	4314	3	252822	26557	2312	-1968	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACACCACTCTCAGTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	169727754	169728456	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_169727800_169728500
ONT_simulated_read_7440310	chr18	+	522	7	ISM	ENSMUSG00000024614.8	ENSMUST00000235634.2	3520	14	75	15955	75	-4361	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTATATTGGTGGAGAATC	NA	NA	NA	NA	NA	NA	NA	NA	90528395	90541723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653
ONT_simulated_read_7440475	chr12	-	1565	13	ISM	ENSMUSG00000021022.10	ENSMUST00000021410.10	4216	14	336	2434	336	-2434	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGGTAAAGTAAGTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	55349447	55328209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378
ONT_simulated_read_7442783	chrX	-	1010	7	ISM	ENSMUSG00000031387.15	ENSMUST00000155597.2	1310	11	912	-18	912	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	435	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	72973450	72965726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286
ONT_simulated_read_7442961	chr8	-	1638	7	ISM	ENSMUSG00000031858.17	ENSMUST00000212451.2	1931	19	19040	-998	18991	1	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTCCTGATGTTAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	70476344	70471215	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70472311_70472396_70472525_70473069_70473161_70474785_70474898_70475005_70475084_70475269_70475320_70476260
ONT_simulated_read_7444022	chr7	+	1033	7	NNC	ENSMUSG00000006154.14	novel	2975	20	NA	NA	-2	1	intron_retention	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAACAGAAGTCATTTGA	NA	NA	NA	NA	NA	NA	NA	NA	4476929	4481906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_4477213_4480328_4480459_4480562_4480699_4480888_4480998_4481138_4481314_4481617_4481751_4481839
ONT_simulated_read_7444055	chr5	+	451	1	ISM	ENSMUSG00000029247.18	ENSMUST00000031160.16	2482	9	75	15673	14	-15481	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTGAGTAACTTGCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	77099228	77099679	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_77099200_77099700
ONT_simulated_read_7446646	chr16	-	732	1	ISM	ENSMUSG00000045975.9	ENSMUST00000170757.3	6556	14	63088	3605	63088	-3605	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGACAAGTGTGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	97660745	97660013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_97660000_97660700
ONT_simulated_read_7449470	chr12	-	405	1	FSM	ENSMUSG00000118552.2	ENSMUST00000238938.2	348	1	0	-57	0	57	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTGTTCTTTTAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	75678092	75677687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_75677700_75678100
ONT_simulated_read_7450739	chrX	-	756	1	ISM	ENSMUSG00000031214.14	ENSMUST00000033560.9	7170	25	332610	3343	331861	4	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGGGGTCAAATGTTAGGA	NA	NA	NA	NA	NA	NA	NA	NA	97601981	97601225	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_97601200_97602000
ONT_simulated_read_7454433	chr7	-	2370	14	NNC	ENSMUSG00000054808.16	novel	3530	22	NA	NA	55223	-169	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCAGTGGCTCCTCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	28606471	28593248	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_28593813_28593925_28594085_28594545_28594612_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396
ONT_simulated_read_7458426	chr17	-	1243	3	ISM	ENSMUSG00000034647.16	ENSMUST00000038116.13	10821	13	100958	3588	100958	-3588	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCATGCGGAGAGGCTC	NA	NA	NA	NA	NA	NA	NA	NA	66283110	66276280	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_66277333_66279291_66279388_66283015
ONT_simulated_read_7460605	chr17	-	1619	11	ISM	ENSMUSG00000063011.8	ENSMUST00000075884.8	2114	16	2329	2	2329	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	456	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTCCTGTAGTGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	25970959	25967588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829
ONT_simulated_read_7460610	chr4	-	1492	11	ISM	ENSMUSG00000028702.16	ENSMUST00000102704.4	3025	18	13565	173	13565	-173	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGTAGTTGTTTGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	115967291	115954344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165
ONT_simulated_read_7462993	chr8	-	794	7	ISM	ENSMUSG00000031590.9	ENSMUST00000033999.8	1039	9	5725	0	4	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGTTCTCGAGTCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	41864386	41850495	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_41850682_41851992_41852104_41852601_41852694_41853798_41853904_41860681_41860797_41863300_41863359_41864259
ONT_simulated_read_7464095	chr16	-	1390	2	ISM	ENSMUSG00000038965.18	ENSMUST00000231643.2	650	3	41294	-776	41294	776	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCCACTTGAAGCTCACT	NA	NA	NA	NA	NA	NA	NA	NA	16978040	16970943	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_16972147_16977853
ONT_simulated_read_7464821	chr10	-	895	1	ISM	ENSMUSG00000019927.7	ENSMUST00000020085.7	1431	7	29388	0	29388	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTTGACTACTTAATGCA	NA	NA	NA	NA	NA	NA	NA	NA	71091704	71090809	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_71090800_71091700
ONT_simulated_read_7469564	chr8	-	993	6	ISM	ENSMUSG00000058056.17	ENST00000261509.10	5513	19	192822	13674	75011	-10100	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAAAGAGGCCGCAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	62138112	61978154	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_61978197_61984945_61985096_61986387_61986610_61988719_61988819_61991721_61991858_62137768
ONT_simulated_read_7475257	chr8	+	477	1	ISM	ENSMUSG00000036913.16	ENST00000366653.6	3179	10	55	35519	0	-35519	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCGGACGGCGCTACTGC	NA	NA	NA	NA	NA	NA	NA	NA	125519830	125520307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_125519800_125520300
ONT_simulated_read_7476577	chr2	-	1080	1	ISM	ENSMUSG00000026942.14	ENSMUST00000028311.13	3044	11	27349	530	27319	354	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGCCCAGCTGCGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	25409603	25408523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25408500_25409600
ONT_simulated_read_7478049	chr9	-	741	2	ISM	ENSMUSG00000051234.7	ENSMUST00000057500.6	1232	3	4669	224	4604	-224	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	151	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGATTGTTCAACCACTTA	NA	NA	NA	NA	NA	NA	NA	NA	96356059	96353213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_96353906_96356010
ONT_simulated_read_7479017	chr6	-	402	1	FSM	ENSMUSG00000108199.2	ENSMUST00000204538.2	1805	1	530	873	530	-873	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAGCTGGGCAAACTCCA	NA	NA	NA	NA	NA	NA	NA	NA	92122744	92122342	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_92122300_92122700
ONT_simulated_read_747906	chr11	-	1250	1	ISM	ENSMUSG00000020160.19	ENST00000272369.14	4564	14	137044	1517	132959	2	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAGATGAACTGTATTAT	NA	NA	NA	NA	NA	NA	NA	NA	18831922	18830672	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_18830700_18831900
ONT_simulated_read_7479715	chr2	+	1020	10	NIC	ENSMUSG00000005881.14	novel	1377	13	NA	NA	0	-512	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGACCAGGGCCTGCCGG	NA	NA	NA	NA	NA	NA	NA	NA	155849964	155859558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155858607_155858723_155858808_155858874_155859499
ONT_simulated_read_7481913	chr4	-	245	1	Antisense	novelGene_ENSMUSG00000029003.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGCCTCAGTAACCACC	NA	NA	NA	NA	NA	NA	NA	NA	148225248	148225003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr4_-_148225000_148225200
ONT_simulated_read_7482160	chr12	+	635	3	ISM	ENSMUSG00000079108.7	ENSMUST00000218879.2	3642	16	0	23529	0	-22713	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGTTAATATTAAACTAGT	NA	NA	NA	NA	NA	NA	NA	NA	55276952	55287092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_55277430_55286078_55286189_55287044
ONT_simulated_read_7482630	chr11	+	312	3	ISM	ENSMUSG00000002129.12	ENSMUST00000002198.4	4920	16	17198	3317	17198	-3317	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCACTCACAGACCAGGT	NA	NA	NA	NA	NA	NA	NA	NA	4127547	4129224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_4127621_4128070_4128226_4129140
ONT_simulated_read_7492086	chr15	-	288	4	ISM	ENSMUSG00000022555.13	ENSMUST00000023214.11	1888	17	7408	1887	7408	-1887	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGTGCCGCCAGCGAAG	NA	NA	NA	NA	NA	NA	NA	NA	76388743	76388101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76388173_76388314_76388421_76388548_76388602_76388685
ONT_simulated_read_7492418	chr14	-	1003	4	ISM	ENSMUSG00000021959.17	ENSMUST00000022531.14	5191	8	48656	1948	36833	1934	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCGTGACATCCGAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	57934924	57929066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_57929228_57931770_57931878_57933576_57933760_57934372
ONT_simulated_read_7493255	chr16	-	889	3	ISM	ENSMUSG00000022706.17	ENSMUST00000119273.2	778	4	1131	-208	1131	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTCGTTTATTTTAATC	NA	NA	NA	NA	NA	NA	NA	NA	18694158	18690767	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_18691413_18692286_18692446_18694073
ONT_simulated_read_7493317	chr8	+	1554	12	NIC	ENSMUSG00000003808.19	novel	1560	12	NA	NA	3	0	combination_of_known_junctions	TRUE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGGGCAGGGTTCTAAGT	NA	NA	NA	NA	NA	NA	NA	NA	85583648	85595741	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594381_85594548_85594637_85594716_85594852_85594968_85595494
ONT_simulated_read_7495916	chr4	+	516	1	FSM	ENSMUSG00000070572.8	ENSMUST00000117987.2	378	1	0	-138	0	138	mono-exon	FALSE	NA	NA	NA	NA	NA	769	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTCTCATTAAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	149541785	149542301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_149541800_149542300
ONT_simulated_read_749667	chr12	-	576	3	ISM	ENSMUSG00000025323.11	ENSMUST00000222314.2	2677	6	39437	270	39351	-270	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCACGGTTGCCGCCATT	NA	NA	NA	NA	NA	NA	NA	NA	118225666	118201958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_118202130_118218144_118218345_118225461
ONT_simulated_read_7499832	chr11	-	1330	1	ISM	ENSMUSG00000034201.14	ENSMUST00000056649.13	2847	7	3528	98	3478	32	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGGATTCTAGAGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	5011799	5010469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_5010500_5011800
ONT_simulated_read_7500743	chr16	+	851	7	ISM	ENSMUSG00000022833.8	ENST00000488653.6	2901	12	81	17516	0	-17516	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCCAGCTCACGGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	34511101	34526997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_34511202_34515960_34516014_34517182_34517256_34517475_34517546_34525198_34525418_34525530_34525626_34526756
ONT_simulated_read_7501866	chr19	+	1181	4	ISM	ENSMUSG00000024949.18	ENSMUST00000113489.8	2863	13	10410	126	10112	-119	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCGCGTTCTTTTCACT	NA	NA	NA	NA	NA	NA	NA	NA	6424158	6427107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_6424318_6424578_6424639_6424748_6424929_6426325
ONT_simulated_read_7502296	chr1	+	276	1	FSM	ENSMUSG00002074901.1	ENSMUST00020183014.1	141	1	-135	0	-135	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAGCAGTCCAACGTAGG	NA	NA	NA	NA	NA	NA	NA	NA	45350697	45350973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_45350700_45351000
ONT_simulated_read_7503075	chr10	-	259	1	ISM	ENSMUSG00000090126.2	ENSMUST00000159347.2	618	2	108	41108	108	-72	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTACAGCAATGAGCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	28798283	28798024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_28798000_28798300
ONT_simulated_read_7505120	chr6	-	482	1	ISM	ENSMUSG00000000184.13	ENSMUST00000000188.12	6330	5	20589	4828	20536	-4828	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAACGAATTAGAGGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	127107434	127106952	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_127107000_127107400
ONT_simulated_read_7506243	chr18	+	529	2	ISM	ENSMUSG00000024483.20	ENST00000394722.7	2001	11	-80	32955	0	-32955	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCAGATTTGCGCACAGT	NA	NA	NA	NA	NA	NA	NA	NA	36693663	36708155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_36694109_36708071
ONT_simulated_read_75068	chr11	-	874	8	ISM	ENSMUSG00000019373.12	ENSMUST00000019517.10	1646	12	2852	3565	36	-1344	internal_fragment	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCAAGCCGTGTACAGTT	NA	NA	NA	NA	NA	NA	NA	NA	59727812	59712185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59720972_59721066_59723709_59723760_59723857_59723971_59727716
ONT_simulated_read_750690	chr7	+	980	9	ISM	ENSMUSG00000051768.10	ENST00000543982.5	1810	16	20060	45	20060	-45	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTACTCCCCCATCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	24266786	24272718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_24266998_24267234_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
ONT_simulated_read_7507069	chr2	+	736	1	ISM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	3272	218	3084	-218	mono-exon	FALSE	NA	NA	NA	NA	NA	684	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTGAAAGATTGGTAGCA	NA	NA	NA	NA	NA	NA	NA	NA	121282947	121283683	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_121282900_121283700
ONT_simulated_read_7509069	chr2	+	446	2	ISM	ENSMUSG00000042821.8	ENSMUST00000052631.8	1621	3	0	3875	0	-3875	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCTCCCTGGAGGCCGA	NA	NA	NA	NA	NA	NA	NA	NA	167380114	167380859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_167380292_167380590
ONT_simulated_read_7511578	chr1	+	512	5	ISM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	0	79470	0	-79470	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGAAGTGTTCACTGACC	NA	NA	NA	NA	NA	NA	NA	NA	72346585	72354641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617
ONT_simulated_read_7513783	chr9	+	693	4	ISM	ENSMUSG00000032393.16	ENSMUST00000034960.14	4808	21	0	40315	0	-38654	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATGCTTTCCTGGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	64939695	64949618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_64939906_64942156_64942294_64944250_64944524_64949545
ONT_simulated_read_7514248	chr13	+	683	4	ISM	ENSMUSG00000021400.9	ENSMUST00000021832.7	2633	7	772	6343	772	-6343	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAAGATAAAGCAGTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	32986792	33000249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_32987028_32989320_32989513_32990741_32990984_33000235
ONT_simulated_read_7515293	chr5	-	325	1	ISM	ENSMUSG00000029456.13	ENSMUST00000031412.12	3826	21	39127	2	39127	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCTGTTCTGAGCTAGAT	NA	NA	NA	NA	NA	NA	NA	NA	121759415	121759090	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_121759100_121759400
ONT_simulated_read_7515919	chr9	-	558	1	ISM	ENSMUSG00000025241.17	ENSMUST00000084715.14	7949	19	58915	2689	46251	408	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTTAATTTCCCCATAAGT	NA	NA	NA	NA	NA	NA	NA	NA	123621811	123621253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_123621300_123621800
ONT_simulated_read_7517832	chr2	-	1450	11	ISM	ENSMUSG00000027406.14	ENSMUST00000028892.11	1616	12	299	0	213	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTGTGTTTTTATT	NA	NA	NA	NA	NA	NA	NA	NA	130126168	130121228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090
ONT_simulated_read_7517868	chr5	-	1386	11	ISM	ENSMUSG00000040351.12	ENST00000265742.8	6081	20	68794	11447	68740	-11447	internal_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCATCTGTCGCTCGTGG	NA	NA	NA	NA	NA	NA	NA	NA	3784185	3751863	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_3751984_3752891_3753038_3754525_3754593_3754787_3754875_3756188_3756324_3763107_3763239_3772545_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3783975
ONT_simulated_read_7518160	chr11	+	1007	9	ISM	ENSMUSG00000000056.8	ENSMUST00000103015.4	4395	11	0	5480	0	-2546	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAGGAGCTGTTTGGCG	NA	NA	NA	NA	NA	NA	NA	NA	121128078	121141202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_121128178_121129244_121129344_121133326_121133471_121135419_121135553_121135761_121135897_121136163_121136283_121137751_121137882_121139954_121140019_121141118
ONT_simulated_read_7518273	chr9	+	123	1	ISM	ENSMUSG00000046460.16	ENST00000328828.6	1699	7	4847	4703	4	-4703	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTGCTTGCCCACGGG	NA	NA	NA	NA	NA	NA	NA	NA	54446271	54446394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_54446300_54446400
ONT_simulated_read_7519210	chr6	+	318	4	ISM	ENSMUSG00000079426.14	ENSMUST00000156898.5	2270	6	32	6342	0	-4909	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATAAATTCATGCGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	113355107	113361067	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_113355170_113357686_113357806_113358923_113359036_113361042
ONT_simulated_read_7519913	chr6	-	172	1	ISM	ENSMUSG00000032667.18	ENSMUST00000057792.9	2409	9	32991	1146	32991	-1146	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTTGTAACAAAATAATCTT	NA	NA	NA	NA	NA	NA	NA	NA	5265464	5265292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_5265300_5265500
ONT_simulated_read_7520734	chr9	-	1206	7	ISM	ENSMUSG00000059890.17	ENST00000252108.8	5847	20	9222	19684	9222	3242	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGATGCTCAGCAGAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	44862216	44854110	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078
ONT_simulated_read_7521894	chr13	-	808	4	ISM	ENSMUSG00000021635.15	ENSMUST00000177848.3	2392	17	26453	0	26453	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTCAGTGCTTAGTATTTA	NA	NA	NA	NA	NA	NA	NA	NA	100761102	100753986	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927
ONT_simulated_read_7523750	chr9	-	1748	1	ISM	ENSMUSG00000032113.17	ENSMUST00000172702.9	3797	12	15949	196	15438	-196	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTTCCGCTTATAAAA	NA	NA	NA	NA	NA	NA	NA	NA	36621721	36619973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_36620000_36621700
ONT_simulated_read_7525782	chr5	+	818	5	ISM	ENSMUSG00000029458.15	ENST00000419234.9	2917	13	3	15155	3	-15139	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGTGCAATGGCCGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	121798663	121810169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_121798912_121800062_121800225_121801358_121801555_121803161_121803352_121810147
ONT_simulated_read_7526264	chr15	-	689	1	ISM	ENSMUSG00000053929.18	ENSMUST00000176274.2	1854	4	9241	64	9037	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGCTTTTCTGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	76531879	76531190	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76531200_76531900
ONT_simulated_read_7527468	chr15	-	1936	5	ISM	ENSMUSG00000009035.16	ENSMUST00000178522.3	3314	9	33174	798	33174	-779	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAAGCAGCACTTGGTC	NA	NA	NA	NA	NA	NA	NA	NA	79253945	79245682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79247086_79249484_79249680_79249986_79250157_79250786_79250879_79253869
ONT_simulated_read_7528406	chr17	-	489	3	ISM	ENSMUSG00000040260.9	ENST00000398904.6	3380	24	18296	18165	18296	3714	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGATGACTCGCAGGTA	NA	NA	NA	NA	NA	NA	NA	NA	49787618	49783555	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_49783584_49786693_49786994_49787457
ONT_simulated_read_7528961	chr11	+	498	1	FSM	ENSMUSG00000078851.5	ENSMUST00000108817.5	2146	1	398	1250	398	-1250	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAATGTTCTGTTACAAG	NA	NA	NA	NA	NA	NA	NA	NA	58845908	58846406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_58845900_58846400
ONT_simulated_read_7529020	chr18	-	1867	4	ISM	ENSMUSG00000037013.18	ENSMUST00000234524.2	2603	9	42424	133	42424	-133	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAAAATAGGCATCAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	14773399	14758844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313
ONT_simulated_read_7530198	chr19	-	1241	8	ISM	ENSMUSG00000024941.10	ENST00000525364.5	2572	16	882	2334	882	-2334	internal_fragment	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCTGTGGCCTTACTGT	NA	NA	NA	NA	NA	NA	NA	NA	5820546	5810788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230
ONT_simulated_read_7535270	chr19	-	1531	6	ISM	ENSMUSG00000013662.7	ENST00000308448.11	3161	10	13509	1013	13509	-573	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCACCCAAACAAAATGATAG	NA	NA	NA	NA	NA	NA	NA	NA	32676018	32650794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839
ONT_simulated_read_7536215	chr17	-	1152	8	ISM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	3104	202	3003	-199	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAGCCTCCCTCTCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	46988726	46985677	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610
ONT_simulated_read_7536674	chr7	-	395	4	ISM	ENSMUSG00000090862.4	ENSMUST00000170953.3	589	6	448	7	386	-2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	157	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	NA	NA	NA	NA	NA	NA	NA	115932982	115930746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930
ONT_simulated_read_7536957	chr11	-	886	4	ISM	ENSMUSG00000039294.15	ENST00000434650.6	525	5	1569	-445	1569	445	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACACCTATATGCACGTGG	NA	NA	NA	NA	NA	NA	NA	NA	121117669	121114489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594
ONT_simulated_read_7537835	chr5	-	929	1	ISM	ENSMUSG00000028945.10	ENSMUST00000030787.9	1784	8	38873	0	4055	0	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATCCTCCATCTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	25008749	25007820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_25007800_25008700
ONT_simulated_read_7538459	chr1	-	1518	1	NIC	ENSMUSG00000058076.13	novel	3171	6	NA	NA	20685	1018	mono-exon	FALSE	NA	NA	NA	NA	NA	253	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCCAGGTTAGGTTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	170957475	170955957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_170956000_170957500
ONT_simulated_read_7539694	chr17	+	762	6	ISM	ENSMUSG00000024457.17	ENSMUST00000053434.15	3198	10	15356	1601	15318	-1601	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTGGCCAAAGACTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	37163393	37168671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
ONT_simulated_read_7539825	chr2	-	3393	7	ISM	ENSMUSG00000051747.16	ENSMUST00000099980.10	16891	45	45923	4167	43650	-4119	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTAGATTTAACTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	76766876	76748454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_76750808_76751894_76751952_76757430_76757620_76762475_76762602_76762789_76763075_76764482_76764715_76766725
ONT_simulated_read_7541965	chr2	+	847	7	ISM	ENSMUSG00000062647.17	ENSMUST00000102898.5	914	8	242	0	242	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	NA	NA	NA	NA	NA	NA	NA	26801017	26803330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
ONT_simulated_read_7545423	chr5	+	950	6	ISM	ENSMUSG00000040407.19	ENSMUST00000044492.10	13123	48	0	123542	0	-123542	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTACAAGAGAAATTAAGA	NA	NA	NA	NA	NA	NA	NA	NA	3978273	4007768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_3978491_3998680_3998897_4001689_4001735_4004791_4004963_4006156_4006313_4007623
ONT_simulated_read_7545564	chr1	+	2228	1	FSM	ENSMUSG00000041075.9	ENSMUST00000114246.4	4532	1	0	2304	0	-2304	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGCAAGGGGGAAACTGC	NA	NA	NA	NA	NA	NA	NA	NA	59521582	59523810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_59521600_59523800
ONT_simulated_read_7546572	chr15	+	505	6	ISM	ENSMUSG00000033287.17	ENST00000402077.7	1254	8	4330	427	3297	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGCACCCGGATGTGAG	NA	NA	NA	NA	NA	NA	NA	NA	78317186	78322697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_78317277_78318114_78318211_78319784_78319911_78321100_78321195_78321783_78321872_78322686
ONT_simulated_read_7546963	chr6	-	765	1	ISM	ENSMUSG00000068335.7	ENSMUST00000089651.6	1807	5	1434	339	1434	-339	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTCTGAGGGTTCCACCT	NA	NA	NA	NA	NA	NA	NA	NA	83009018	83008253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_83008300_83009000
ONT_simulated_read_7547813	chr4	-	828	7	ISM	ENSMUSG00000028766.11	ENST00000539907.5	2094	9	41	2037	41	-2037	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGCATGAAGCAGTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	137483023	137471092	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482940
ONT_simulated_read_7547985	chr2	+	516	4	ISM	ENSMUSG00000027067.17	ENSMUST00000168266.8	2721	17	4	7155	4	-7155	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAACTGGGGGACAGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	84867798	84870295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_84867875_84868137_84868314_84868696_84868883_84870217
ONT_simulated_read_7551490	chr16	-	1245	7	ISM	ENSMUSG00000022536.15	ENSMUST00000115844.3	3292	16	23250	1230	23250	-1230	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGACAGGGAGCACTGGA	NA	NA	NA	NA	NA	NA	NA	NA	4844471	4833002	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371
ONT_simulated_read_7551652	chr13	-	577	1	NIC	ENSMUSG00000021589.14	novel	4980	12	NA	NA	30417	-132	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTCATGTCTAGAGATA	NA	NA	NA	NA	NA	NA	NA	NA	76061569	76060992	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_76061000_76061600
ONT_simulated_read_755472	chr9	+	696	10	ISM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	7557	20617	7557	-20617	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATATACACCCGTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	86911623	86939210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194
ONT_simulated_read_7559308	chr2	-	1203	1	ISM	ENSMUSG00000041762.17	ENSMUST00000076463.12	5061	17	42842	1022	42682	462	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTTTAGATTTTAGTCTT	NA	NA	NA	NA	NA	NA	NA	NA	73174074	73172871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_73172900_73174100
ONT_simulated_read_75629	chr14	+	964	1	ISM	ENSMUSG00000016831.13	ENSMUST00000022766.8	5350	10	15923	369	15923	-369	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGAGGTAGGGAGGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	52532525	52533489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_52532500_52533500
ONT_simulated_read_7567998	chr12	-	701	5	ISM	ENSMUSG00000021068.18	ENST00000382043.8	4069	27	41518	37346	41516	-36151	internal_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGCTGAAGTCTCTCAT	NA	NA	NA	NA	NA	NA	NA	NA	70108112	70101684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_70101746_70102080_70102218_70102645_70102814_70103425_70103573_70107924
ONT_simulated_read_7569130	chr8	+	1029	8	ISM	ENSMUSG00000002342.18	ENST00000450333.6	1133	9	2543	-1	2543	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGCACTAGGCTCTAGT	NA	NA	NA	NA	NA	NA	NA	NA	70629494	70634791	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70629576_70629890_70629989_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
ONT_simulated_read_7569851	chr19	-	610	9	ISM	ENSMUSG00000024878.10	ENST00000382447.8	1094	14	13380	45	13380	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	550	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCAGAGATGGAGTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	24925471	24897988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24915759_24915805_24918112_24918200_24920046_24920094_24925432
ONT_simulated_read_7571277	chr19	-	1373	6	ISM	ENSMUSG00000024797.15	ENSMUST00000025711.13	2675	10	6112	487	6081	-487	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTGTGTGCGCCTACGCA	NA	NA	NA	NA	NA	NA	NA	NA	6121149	6118358	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6118406_6118884_6118973_6119055_6119178_6119494_6119714_6119887_6120104_6120468
ONT_simulated_read_7571418	chr4	-	195	1	NIC	ENSMUSG00000028436.9	novel	3442	9	NA	NA	21674	-1721	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAACTTCCACCCTCAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	41293215	41293020	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_41293000_41293200
ONT_simulated_read_7572	chr13	-	164	1	ISM	ENSMUSG00000021541.15	ENSMUST00000022023.13	3483	12	121810	651	121810	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGACTGCCCGCTTGGC	NA	NA	NA	NA	NA	NA	NA	NA	56921740	56921576	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_56921600_56921700
ONT_simulated_read_7572405	chr1	-	786	4	ISM	ENSMUSG00000026279.15	ENSMUST00000189728.7	713	5	6636	-169	6636	169	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCAAAGACTATACTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	93653012	93632939	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878
ONT_simulated_read_7575495	chr1	-	2192	3	ISM	ENSMUSG00000025959.14	ENSMUST00000114086.8	7662	4	42201	4834	42192	-4834	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAAATGCCATTGTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	64118449	64073439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_64074924_64081472_64081597_64117865
ONT_simulated_read_757683	chr17	+	861	6	ISM	ENSMUSG00000033826.11	ENST00000327475.11	13751	91	143793	84270	143793	-84270	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCCTTCTCATCGAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	30998706	31009861	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_30998913_31001357_31001496_31003036_31003165_31003980_31004153_31006118_31006275_31009800
ONT_simulated_read_7578041	chr10	-	511	5	ISM	ENSMUSG00000025417.9	ENST00000422156.7	1542	9	4926	974	4858	-927	internal_fragment	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACCTCCCGCCCTGGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	127042558	127035590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127042482
ONT_simulated_read_7578834	chr1	+	571	5	NNC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	139	-4218	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCCCTTGAGCGCCA	NA	NA	NA	NA	NA	NA	NA	NA	75412756	75415599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_+_75412957_75413427_75413483_75413580_75413679_75414894_75414999_75415485
ONT_simulated_read_7580429	chr9	-	576	3	FSM	ENSMUSG00000020258.17	ENST00000305690.12	1315	3	25	714	25	-714	multi-exon	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCCTTTGGAAGTGATTG	NA	NA	NA	NA	NA	NA	NA	NA	106035079	106033274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_106033307_106034343_106034496_106034687
ONT_simulated_read_758048	chr3	-	151	1	FSM	ENSMUSG00000068855.4	ENSMUST00000090782.4	520	1	369	0	369	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACACTTTGGTGGCTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	96127827	96127676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_96127700_96127800
ONT_simulated_read_7581149	chr3	+	395	1	ISM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	30616	700	30343	-304	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCCTGAAACACTATTATG	NA	NA	NA	NA	NA	NA	NA	NA	121250761	121251156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_121250800_121251200
ONT_simulated_read_7581413	chr4	+	1519	9	ISM	ENSMUSG00000006386.16	ENST00000519097.5	3759	21	94	44375	0	-44375	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGTTGAAGCCAACAGACA	NA	NA	NA	NA	NA	NA	NA	NA	94627536	94718256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_94627930_94686847_94686959_94687363_94687517_94692521_94692654_94693049_94693191_94708320_94708473_94715492_94715638_94715906_94716063_94718120
ONT_simulated_read_7585650	chr19	+	529	1	ISM	ENSMUSG00000025215.11	ENST00000467928.2	1714	3	0	5362	0	-5191	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGGCTCCTACAACGTGA	NA	NA	NA	NA	NA	NA	NA	NA	45139118	45139647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_45139100_45139600
ONT_simulated_read_7585693	chr13	-	1400	1	ISM	ENSMUSG00000021215.16	ENSMUST00000099946.6	3871	10	9116	1045	8971	270	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGGGAAGGGAAGAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	3934462	3933062	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_3933100_3934500
ONT_simulated_read_7586793	chr2	-	254	2	ISM	ENSMUSG00000027423.16	ENSMUST00000110030.10	2512	14	0	20289	0	-20289	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGCTGGAGCAGCAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	144112826	144112331	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_144112380_144112620
ONT_simulated_read_7589064	chr19	-	653	6	ISM	ENSMUSG00000024906.11	ENSMUST00000124334.8	2067	16	4248	0	4248	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGGTCCTTCTGAAAT	NA	NA	NA	NA	NA	NA	NA	NA	5534182	5532859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5533792_5533957_5534054_5534140
ONT_simulated_read_7589300	chr1	-	1474	1	ISM	ENSMUSG00000037470.15	ENSMUST00000046875.14	9033	41	100083	2722	100083	-2722	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGCAATTGTTAAGTAATA	NA	NA	NA	NA	NA	NA	NA	NA	36183303	36181829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_36181800_36183300
ONT_simulated_read_7589510	chr7	-	265	1	ISM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	2137	13340	2137	-13340	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCAGAGGTGGAGGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	64039879	64039614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_64039600_64039900
ONT_simulated_read_759099	chr17	+	442	4	ISM	ENSMUSG00000025731.17	ENST00000614890.4	552	5	3	317	0	-317	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTCGTGACACAGTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	26094503	26095648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_26094701_26094933_26095097_26095468_26095537_26095634
ONT_simulated_read_7592508	chr14	-	1388	2	ISM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	14777	741	14530	-729	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATGACATATTTATCCC	NA	NA	NA	NA	NA	NA	NA	NA	52502225	52499956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52501275_52502155
ONT_simulated_read_7594807	chr11	-	434	3	ISM	ENSMUSG00000038208.14	ENST00000579146.5	653	4	1452	-1	1452	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1951	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTGGGGTTTGGACCTG	NA	NA	NA	NA	NA	NA	NA	NA	98289809	98280745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_98280928_98288721_98288875_98289710
ONT_simulated_read_7595372	chr6	-	693	1	ISM	ENSMUSG00000035378.18	ENSMUST00000113312.9	6816	11	97383	4826	97365	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGGTGTAAATAATTAGA	NA	NA	NA	NA	NA	NA	NA	NA	100550735	100550042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_100550000_100550700
ONT_simulated_read_759921	chr7	-	1477	11	ISM	ENSMUSG00000030619.11	ENSMUST00000238981.2	2060	12	3945	0	3584	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTAGAAAGCTATTTAC	NA	NA	NA	NA	NA	NA	NA	NA	89626239	89603861	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104
ONT_simulated_read_7599474	chr8	+	474	4	ISM	ENSMUSG00000054162.16	ENST00000510741.5	1579	9	2	135013	0	-135013	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGAGAGCTCTGTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	63404833	63673797	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_63405023_63566576_63566623_63596932_63597048_63673673
ONT_simulated_read_7599640	chr11	-	982	10	ISM	ENSMUSG00000069631.15	ENST00000638888.1	1509	12	4	1099	4	-201	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCCGCTCCATCGCCAAC	NA	NA	NA	NA	NA	NA	NA	NA	106078004	106055705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106071780_106071810_106075387_106075446_106077926
ONT_simulated_read_7601426	chr6	-	1360	10	ISM	ENSMUSG00000038521.18	ENSMUST00000160505.8	2946	12	1325	1301	1325	-1298	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCACCCCAGAGCTAGTGG	NA	NA	NA	NA	NA	NA	NA	NA	124517955	124508604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124508700_124509499_124509575_124510232_124510362_124510854_124510934_124511316_124511433_124512191_124512346_124513290_124513491_124514319_124514446_124517279_124517458_124517747
ONT_simulated_read_760188	chr11	-	636	4	ISM	ENSMUSG00000000753.16	ENST00000254722.9	1250	7	1563	3829	1563	1497	internal_fragment	FALSE	canonical	NA	NA	NA	NA	130	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCCATGATGTCAGATCC	NA	NA	NA	NA	NA	NA	NA	NA	75307254	75304798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_75304876_75305746_75305951_75306400_75306557_75307055
ONT_simulated_read_760373	chr9	-	934	1	ISM	ENSMUSG00000032355.17	ENSMUST00000185144.8	2921	11	116933	127916	8823	-65232	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAAAGGATGGTGACTCC	NA	NA	NA	NA	NA	NA	NA	NA	77138212	77137278	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_77137300_77138200
ONT_simulated_read_7607617	chr14	-	787	1	FSM	ENSMUSG00000023156.5	ENSMUST00000180369.2	477	1	0	-310	0	310	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCTCACAACTGTATGTA	NA	NA	NA	NA	NA	NA	NA	NA	14379695	14378908	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_14378900_14379700
ONT_simulated_read_7609751	chr14	-	1005	4	ISM	ENSMUSG00000022052.10	ENST00000665949.1	2087	11	47120	280	47120	-280	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	215	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCATTGTGATGACGTC	NA	NA	NA	NA	NA	NA	NA	NA	67260639	67253524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474
ONT_simulated_read_76110	chr19	+	416	2	ISM	ENSMUSG00000024661.8	ENSMUST00000235196.2	1494	5	0	2602	0	-2253	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	1464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCGCTTGTTGCCAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	9957961	9959854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_9958255_9959731
ONT_simulated_read_7611949	chr1	-	2035	17	ISM	ENSMUSG00000026335.17	ENSMUST00000058762.15	4095	26	160883	16894	42517	-16888	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTTTTCAAACCAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	97862463	97765712	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_97765804_97768004_97768206_97768423_97768635_97769956_97770030_97772320_97772438_97780827_97780958_97791927_97792246_97811850_97811923_97813326_97813512_97822085_97822190_97823356_97823434_97823693_97823775_97824932_97825001_97826065_97826115_97850818_97850903_97852155_97852242_97862375
ONT_simulated_read_7612011	chr7	-	689	9	ISM	ENSMUSG00000030720.17	ENST00000355477.10	945	11	452	268	452	-268	internal_fragment	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCATTCTGTACGAAGGGC	NA	NA	NA	NA	NA	NA	NA	NA	126179584	126171712	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178572_126178646_126179315_126179402_126179504
ONT_simulated_read_7614337	chr7	-	2176	9	ISM	ENSMUSG00000038886.11	ENSMUST00000098346.5	6554	24	10248	1771	8601	670	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGTGTCTTGGGAAGGCA	NA	NA	NA	NA	NA	NA	NA	NA	80010875	80000615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80001600_80002673_80002782_80002909_80003111_80006089_80006227_80007990_80008133_80008657_80008792_80009027_80009143_80009383_80009507_80010643
ONT_simulated_read_7617679	chr6	-	202	1	FSM	ENSMUSG00000107176.2	ENSMUST00000202370.2	423	1	0	221	0	-221	mono-exon	FALSE	NA	NA	NA	NA	NA	433	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAACCAGAACTAAGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	66852727	66852525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_66852500_66852700
ONT_simulated_read_7618026	chr12	-	1288	1	ISM	ENSMUSG00000021276.11	ENSMUST00000043716.9	2029	5	15016	232	14968	-232	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAGACCACTGGGGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	110840563	110839275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_110839300_110840600
ONT_simulated_read_7619050	chr10	-	219	1	ISM	ENSMUSG00000003923.15	ENSMUST00000092430.11	4167	7	9616	2982	9014	11	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCTGTAGCCATGGACT	NA	NA	NA	NA	NA	NA	NA	NA	71064494	71064275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_71064300_71064500
ONT_simulated_read_7620631	chr8	+	1706	15	ISM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	25	527	25	-526	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTGGTAATGTTGTAGAA	NA	NA	NA	NA	NA	NA	NA	NA	85415917	85425888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_85415979_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767
ONT_simulated_read_7621771	chr12	-	2219	15	ISM	ENSMUSG00000042050.9	ENSMUST00000039349.8	3721	22	21241	159	21241	-159	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCTCCATCAGCCTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	116205401	116170829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_116171404_116175344_116175569_116176993_116177126_116177301_116177402_116180100_116180162_116181723_116181776_116182236_116182299_116182400_116182515_116188506_116188670_116189584_116189758_116193200_116193331_116195308_116195398_116196214_116196327_116196936_116197067_116205298
ONT_simulated_read_7621934	chr2	+	681	6	ISM	ENSMUSG00000027168.22	ENST00000639034.2	1794	11	94	8094	0	-8094	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCCAGGGCAATCGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	105505871	105515288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_105505995_105506088_105506318_105510154_105510235_105510591_105510653_105514172_105514304_105515231
ONT_simulated_read_7622873	chr10	-	625	5	ISM	ENSMUSG00000019822.13	ENSMUST00000019965.13	1602	10	1825	261	1825	-261	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCAGGAGAAGAGGCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	41364511	41363428	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364428
ONT_simulated_read_7623745	chr2	-	2135	4	ISM	ENSMUSG00000026925.17	ENSMUST00000145701.8	4147	10	9629	0	9556	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCATGGTGACTCTTACT	NA	NA	NA	NA	NA	NA	NA	NA	26289583	26286260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_26287984_26288567_26288705_26289244_26289361_26289424
ONT_simulated_read_7625757	chr1	-	1177	1	ISM	ENSMUSG00000036975.6	ENSMUST00000037906.6	3341	2	2075	2067	2075	-2067	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGATGAATCTCTTAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	119838863	119837686	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_119837700_119838900
ONT_simulated_read_7626165	chr8	+	569	4	ISM	ENSMUSG00000025521.16	ENSMUST00000209852.2	1193	6	13	2468	13	-2468	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCTGTACCTTGAGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	65399883	65416904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_65399986_65409037_65409185_65411996_65412262_65416849
ONT_simulated_read_762653	chr7	-	223	1	NIC	ENSMUSG00000048787.14	novel	2917	4	NA	NA	-127	-38325	mono-exon	FALSE	NA	NA	NA	NA	NA	351	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAACGCAAGCGGGGATGG	NA	NA	NA	NA	NA	NA	NA	NA	119495095	119494872	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_119494900_119495100
ONT_simulated_read_7627839	chr3	+	1539	9	ISM	ENSMUSG00000027722.15	ENSMUST00000198968.2	2916	17	0	139944	0	-139944	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAGATGCTGCACTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	37474460	37493301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_37474650_37478659_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249
ONT_simulated_read_7629199	chr10	+	1339	7	FSM	ENSMUSG00000006498.17	ENST00000627714.2	1336	7	-3	0	-3	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCCCCTGAGCTCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	79690438	79699747	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_79690556_79692337_79692369_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ONT_simulated_read_7633015	chr10	+	792	7	ISM	ENSMUSG00000020250.12	ENSMUST00000020484.9	3325	14	65	15830	37	-14723	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAATCGGTGAACACAT	NA	NA	NA	NA	NA	NA	NA	NA	82695077	82717716	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_82695135_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556
ONT_simulated_read_7634620	chr8	+	478	4	ISM	ENSMUSG00000031930.12	ENSMUST00000166615.3	4314	24	46967	40580	46932	-39197	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACAGTCCACACCAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	108209963	108244647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_108210102_108212177_108212275_108232938_108233067_108244532
ONT_simulated_read_7635247	chr10	-	554	4	ISM	ENSMUSG00000039914.7	ENSMUST00000220027.2	1307	5	537	581	537	-581	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCCAGAAACAGCCATCCC	NA	NA	NA	NA	NA	NA	NA	NA	128204023	128199549	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128199661_128200273_128200376_128200891_128201085_128203875
ONT_simulated_read_7636170	chr5	-	359	2	ISM	ENSMUSG00000072762.10	ENSMUST00000112547.8	2001	4	12598	1501	12598	1340	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTATACCCTGGTAATC	NA	NA	NA	NA	NA	NA	NA	NA	109886865	109885356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_109885666_109886815
ONT_simulated_read_7642000	chr14	-	1648	1	NIC	ENSMUSG00000063142.16	novel	3354	28	NA	NA	202288	-606	mono-exon	FALSE	NA	NA	NA	NA	NA	253	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTTTTCTTTAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	23359315	23357667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_-_23357700_23359300
ONT_simulated_read_7642248	chr9	-	983	4	ISM	ENSMUSG00000032131.17	ENSMUST00000034648.16	3476	14	9986	1066	9986	-1066	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCCGCCACACTCTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	44188855	44185550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44186155_44186312_44186432_44186546_44186706_44188754
ONT_simulated_read_7644478	chr19	+	315	1	ISM	ENSMUSG00000024949.18	ENSMUST00000131252.8	4353	13	29	13997	0	-12479	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGAAGTCGCCGCGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	6413748	6414063	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_6413700_6414100
ONT_simulated_read_7644504	chr11	-	1031	1	FSM	ENSMUSG00000078154.4	ENSMUST00000104959.2	1310	1	0	279	0	-279	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTAGACCCTGCTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	48717482	48716451	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_-_48716500_48717500
ONT_simulated_read_764484	chr5	-	671	1	ISM	ENSMUSG00000039753.17	ENSMUST00000119523.8	2801	11	23217	13641	23176	-371	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGATGTTACCAGATCACA	NA	NA	NA	NA	NA	NA	NA	NA	43916268	43915597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_43915600_43916300
ONT_simulated_read_7646309	chr8	+	893	4	ISM	ENSMUSG00000031962.7	ENSMUST00000034443.7	3251	14	0	8143	0	-7759	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTTGGGTGGCTCTACCC	NA	NA	NA	NA	NA	NA	NA	NA	123574704	123585993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_123575269_123583240_123583397_123584098_123584255_123585976
ONT_simulated_read_7647533	chr7	-	488	5	ISM	ENSMUSG00000061028.8	ENST00000544944.6	1964	18	17959	1118	17959	-1118	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTTCTCCACCCTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	19319265	19316152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_19316240_19318079_19318127_19318208_19318268_19318704_19318749_19319014
ONT_simulated_read_7647727	chr1	-	1842	9	ISM	ENSMUSG00000026277.15	ENSMUST00000027498.14	4249	12	8030	1896	8030	-1896	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCTACAGGTAGAAGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	93555414	93549368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93553931_93554746_93554856_93555375
ONT_simulated_read_7647934	chr1	-	1818	7	ISM	ENSMUSG00000052534.16	ENST00000560641.5	1920	8	127230	-1	127230	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACATCCAACCATTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	168037164	167985510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_167986394_168011098_168011189_168012524_168012638_168018846_168019007_168023316_168023453_168030915_168031107_168036919
ONT_simulated_read_7649646	chr11	-	495	5	ISM	ENSMUSG00000015542.18	ENSMUST00000103038.8	1143	7	2240	324	32	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGGAAGGCCGAGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	115075918	115073981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832
ONT_simulated_read_7650578	chr15	-	258	2	ISM	ENSMUSG00000022449.15	ENST00000389420.8	5808	38	81357	18364	81334	-18364	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTGCAGATCGGGACGA	NA	NA	NA	NA	NA	NA	NA	NA	94220805	94189467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_94189583_94220662
ONT_simulated_read_7650754	chr19	-	567	1	ISM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	20957	0	20957	0	mono-exon	FALSE	NA	NA	NA	NA	NA	247	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	NA	NA	NA	NA	NA	NA	NA	NA	5324526	5323959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5324000_5324500
ONT_simulated_read_7651057	chr5	-	1297	8	ISM	ENSMUSG00000042216.14	ENSMUST00000057209.12	4339	16	14655	1807	14641	-218	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGTGCAGATTCTAATTG	NA	NA	NA	NA	NA	NA	NA	NA	113413812	113392901	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_113392960_113398738_113398907_113400863_113400961_113403117_113403228_113406656_113406740_113407914_113408040_113411114_113411703_113413744
ONT_simulated_read_7651326	chr6	-	2703	9	ISM	ENSMUSG00000007827.11	ENSMUST00000112830.3	6930	34	43821	329	43821	-329	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGCAGAAGTATTACAGAA	NA	NA	NA	NA	NA	NA	NA	NA	118495366	118478597	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_118480118_118482686_118482733_118483336_118483566_118484598_118484814_118485450_118485742_118488526_118488657_118492741_118492855_118494856_118494951_118495301
ONT_simulated_read_76549	chr6	+	1300	4	FSM	ENSMUSG00000029680.3	ENST00000223026.9	1584	4	4	280	0	-280	multi-exon	FALSE	canonical	NA	NA	NA	NA	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTCCATTTGAACCCTGC	NA	NA	NA	NA	NA	NA	NA	NA	24748327	24765835	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_24748392_24755735_24756738_24763794_24763885_24765691
ONT_simulated_read_7655336	chr13	-	1631	1	NIC	ENSMUSG00000038991.18	novel	2843	10	NA	NA	26205	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1546	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGAGTCTTACTTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	38685685	38684054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_38684100_38685700
ONT_simulated_read_7656089	chr3	-	393	4	ISM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	20561	1483	20444	-1483	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCTCAGTTTGAGCACAC	NA	NA	NA	NA	NA	NA	NA	NA	138174715	138166199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_138166262_138168125_138168192_138171984_138172129_138174594
ONT_simulated_read_7656451	chr4	-	590	7	ISM	ENSMUSG00000050323.15	ENSMUST00000058183.9	1082	9	5881	168	2922	-168	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTACTTAAAGAAAATCCAG	NA	NA	NA	NA	NA	NA	NA	NA	11070323	11051212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199
ONT_simulated_read_766034	chr5	+	2646	2	ISM	ENSMUSG00000042719.18	ENSMUST00000042163.15	5447	24	41482	0	41482	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCAGGTTTGTTGAGACT	NA	NA	NA	NA	NA	NA	NA	NA	121577480	121580472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_121577545_121577890
ONT_simulated_read_7660442	chr3	-	744	1	ISM	ENSMUSG00000039103.13	ENSMUST00000199470.5	2392	10	27785	257	15823	239	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGATTTTCTAGCTTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	151943619	151942875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_151942900_151943600
ONT_simulated_read_7663681	chrX	-	2439	16	ISM	ENSMUSG00000057000.13	ENSMUST00000080929.13	2978	19	5612	66	5612	-66	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTGCCGCAAACACTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	134980392	134972913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979846_134980109_134980215_134980308
ONT_simulated_read_7664275	chr11	-	1719	14	ISM	ENSMUSG00000017288.16	ENST00000680128.1	1900	16	43201	-3	43201	3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGCTTTGTATGGGACCT	NA	NA	NA	NA	NA	NA	NA	NA	76027141	75953805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_75953881_75957566_75957716_75967260_75967340_75967865_75967949_75971972_75972121_75973267_75973511_75983046_75983142_75992812_75992915_76004766_76004909_76007884_76008028_76008487_76008632_76012343_76012423_76025234_76025355_76027024
ONT_simulated_read_7664736	chr11	-	600	1	NIC	ENSMUSG00000034120.19	novel	1899	3	NA	NA	1971	5	mono-exon	FALSE	NA	NA	NA	NA	NA	599	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCACTAGGCGCAGTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	116741788	116741188	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_116741200_116741800
ONT_simulated_read_7666043	chr13	-	1003	8	ISM	ENSMUSG00000021546.19	ENSMUST00000177497.8	2585	12	2762	1020	2762	-309	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	180	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTAATGTTTTAGTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	58543107	58540072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978
ONT_simulated_read_7667839	chr10	+	1935	14	ISM	ENSMUSG00000020064.10	ENSMUST00000219577.2	3914	26	1899	18708	1899	-18704	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTCCAAGAGCTGATAGA	NA	NA	NA	NA	NA	NA	NA	NA	63081600	63134949	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898
ONT_simulated_read_7668742	chr16	-	765	1	NIC	ENSMUSG00000022639.15	novel	2052	4	NA	NA	4483	-1811	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATCATACTTATGTAGAT	NA	NA	NA	NA	NA	NA	NA	NA	50548563	50547798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_50547800_50548600
ONT_simulated_read_7670383	chr12	+	1540	12	ISM	ENSMUSG00000073079.7	ENSMUST00000220578.2	4498	16	15	10102	15	-7626	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTTACCCTTAAATGTTT	NA	NA	NA	NA	NA	NA	NA	NA	55127061	55152050	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033_55138119_55142599_55142705_55143893_55143961_55144040_55144099_55146697_55146849_55148124_55148274_55148607_55148709_55149252_55149340_55151975
ONT_simulated_read_7675337	chr3	+	903	11	ISM	ENSMUSG00000001016.13	ENSMUST00000001042.10	2027	14	4532	847	4532	-847	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGAAGGAGGGGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	90387985	90394839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
ONT_simulated_read_7676582	chr10	-	2829	1	ISM	ENSMUSG00000020003.17	ENSMUST00000020182.16	8099	10	46711	4250	46669	2682	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTAGCACCTCCTTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	19736724	19733895	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_19733900_19736700
ONT_simulated_read_7677224	chr11	-	378	5	ISM	ENSMUSG00000025137.16	ENSMUST00000026129.16	1881	14	4534	1541	4523	-1211	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGAACTGGGAGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	120504228	120502453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120502532_120502826_120502910_120503288_120503428_120503855_120503910_120504204
ONT_simulated_read_7677520	chr13	+	481	5	ISM	ENSMUSG00000021701.9	ENSMUST00000022212.9	2800	14	2751	1809	2751	-1809	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGGAAGTGTGGCAGAC	NA	NA	NA	NA	NA	NA	NA	NA	110534330	110535569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_110534421_110534507_110534656_110534906_110535005_110535212_110535343_110535554
ONT_simulated_read_7679639	chr8	-	177	2	ISM	ENSMUSG00000002343.12	ENSMUST00000019679.12	2263	8	10793	2431	10793	-2431	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGACGACGTAAAGGATGCCA	NA	NA	NA	NA	NA	NA	NA	NA	70676323	70675252	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70675300_70676193
ONT_simulated_read_7679682	chr4	-	2094	1	ISM	ENSMUSG00000053841.16	ENSMUST00000046425.16	4569	11	11893	1001	11633	-996	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATCTGACCTGTTAACCC	NA	NA	NA	NA	NA	NA	NA	NA	129522965	129520871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129520900_129523000
ONT_simulated_read_7680250	chr15	-	238	3	ISM	ENSMUSG00000042961.14	ENST00000397202.6	2028	12	37994	659	37994	-659	internal_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCGATTACCACATTTCC	NA	NA	NA	NA	NA	NA	NA	NA	7241664	7237202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_7237284_7237982_7238087_7241611
ONT_simulated_read_7681363	chr5	-	1280	8	ISM	ENSMUSG00000042216.14	ENSMUST00000057209.12	4339	16	14169	7750	14155	-6161	internal_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGCCCACTACGTGCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	113414298	113398844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_113398907_113400863_113400961_113403117_113403228_113406656_113406740_113407914_113408040_113411114_113411703_113413744_113413814_113414152
ONT_simulated_read_7687215	chr18	-	5092	1	ISM	ENSMUSG00000034320.15	ENSMUST00000146409.8	7814	4	11979	1623	736	-1623	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGCAAGACTGAATCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	61332705	61327613	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_61327600_61332700
ONT_simulated_read_7687607	chr8	-	893	1	ISM	ENSMUSG00000031774.9	ENSMUST00000034226.8	2873	8	26162	805	26162	-805	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACGTTAGAGAAGCAAACT	NA	NA	NA	NA	NA	NA	NA	NA	95302463	95301570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_95301600_95302500
ONT_simulated_read_7688746	chr11	-	278	1	ISM	ENSMUSG00000017188.4	ENSMUST00000017332.4	886	2	0	869	0	-499	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGCGCAGTTGCAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	101169940	101169662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_101169700_101169900
ONT_simulated_read_769223	chr6	-	620	5	ISM	ENSMUSG00000030357.11	ENST00000457486.2	1334	10	4736	67	4736	-67	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGAGATGAAGGGTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	128410737	128407805	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665
ONT_simulated_read_7694147	chr16	-	3142	1	ISM	ENSMUSG00000043391.11	ENSMUST00000053336.8	5164	2	40942	1537	40906	-1537	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTGTAGGCGGTAAGCAC	NA	NA	NA	NA	NA	NA	NA	NA	21472473	21469331	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_21469300_21472500
ONT_simulated_read_7694719	chr11	-	977	2	ISM	ENSMUSG00000002814.16	ENSMUST00000002891.11	3741	19	34287	310	34186	-309	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCTGCTGGATGCTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	60633904	60631193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_60631528_60633261
ONT_simulated_read_7695512	chr1	+	265	1	Antisense	novelGene_ENSMUSG00000026239.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAGTGCACACAAATTCT	NA	NA	NA	NA	NA	NA	NA	NA	86470937	86471202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr1_+_86470900_86471200
ONT_simulated_read_7697088	chr7	-	905	6	ISM	ENSMUSG00000109324.3	ENSMUST00000045325.14	1071	9	6831	-125	6794	59	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCATTTCTGCTCTAGGG	NA	NA	NA	NA	NA	NA	NA	NA	44628949	44626122	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806
ONT_simulated_read_7697218	chr5	+	581	5	ISM	ENSMUSG00000028962.15	ENSMUST00000115047.3	4264	22	2913	6595	2913	-6595	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGAGTTCTCCTTCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	24636333	24639350	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_24636440_24636520_24636664_24637759_24637941_24639101_24639238_24639335
ONT_simulated_read_7698621	chr12	-	721	1	ISM	ENSMUSG00000041846.16	ENSMUST00000048305.10	4516	15	0	43534	0	-42900	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGTTTGCGGCCGCCCGC	NA	NA	NA	NA	NA	NA	NA	NA	101049922	101049201	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_101049200_101049900
ONT_simulated_read_7700064	chr12	-	1865	1	ISM	ENSMUSG00000052593.17	ENSMUST00000101551.10	4469	20	47996	224	47942	78	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGGCATTGATGATACC	NA	NA	NA	NA	NA	NA	NA	NA	21375598	21373733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_21373700_21375600
ONT_simulated_read_7700818	chr4	+	307	3	ISM	ENSMUSG00000029029.15	ENSMUST00000030895.12	1598	12	37	10277	37	-10277	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCGGGGCTGGTCGCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	154226865	154230996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_154226971_154229699_154229853_154230947
ONT_simulated_read_7705882	chr11	-	1859	5	ISM	ENSMUSG00000018412.17	ENSMUST00000106971.2	5222	15	16402	23209	16402	-23209	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCCTGTACTGACCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	104316126	104247579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747
ONT_simulated_read_7706283	chr7	-	1762	9	ISM	ENSMUSG00000005610.18	ENSMUST00000161051.8	3548	22	6194	437	6194	-437	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGAAAACTGAATAGCAACA	NA	NA	NA	NA	NA	NA	NA	NA	110676030	110671575	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902
ONT_simulated_read_7707420	chr17	-	2109	14	ISM	ENSMUSG00000040327.17	ENST00000252050.9	7571	40	15129	20221	15129	-20221	internal_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCCCGTTACTGTAGTCT	NA	NA	NA	NA	NA	NA	NA	NA	46839582	46831839	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_46831882_46831966_46832083_46832261_46832442_46832776_46832911_46833045_46833222_46833440_46833537_46834181_46834288_46835991_46836164_46836281_46836373_46836633_46836862_46837304_46837411_46837487_46837735_46838824_46839043_46839385
ONT_simulated_read_7708762	chr1	-	139	1	ISM	ENSMUSG00000026620.12	ENST00000611084.4	4418	18	100731	2106	100702	-1941	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTGTGACTATGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	184631065	184630926	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_184630900_184631100
ONT_simulated_read_7710761	chr15	-	1516	8	ISM	ENSMUSG00000022442.17	ENSMUST00000109480.8	1876	12	8591	0	8584	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	326	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAGATCTACCTGCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	83386491	83368028	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281
ONT_simulated_read_7716652	chr7	-	344	2	ISM	ENSMUSG00000032637.16	ENST00000340394.12	3798	23	10411	342	9425	-30	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGGGGGAATTCCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	126092161	126091221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126091388_126091983
ONT_simulated_read_7719835	chr15	-	347	1	FSM	ENSMUSG00000115938.2	ENSMUST00000230504.2	252	1	0	-95	0	95	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAAGCTTCAATTTACTGA	NA	NA	NA	NA	NA	NA	NA	NA	99604694	99604347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_99604300_99604700
ONT_simulated_read_7720162	chr14	-	2930	4	ISM	ENSMUSG00000040123.18	ENSMUST00000173954.3	5357	8	12316	1592	12316	-1592	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTAATGGGCAGGGAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	57036605	57029636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366
ONT_simulated_read_7721429	chr17	-	1130	1	NIC	ENSMUSG00000024048.16	novel	1937	4	NA	NA	2522	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6701	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAGTTGTCATGTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	71301780	71300650	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_71300600_71301800
ONT_simulated_read_7721870	chr9	-	693	1	ISM	ENSMUSG00000023249.16	ENSMUST00000067218.14	2962	11	5551	384	4978	-79	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATCGTGAAGGGAAAACGA	NA	NA	NA	NA	NA	NA	NA	NA	106348597	106347904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_106347900_106348600
ONT_simulated_read_7725142	chr2	-	815	1	NIC	ENSMUSG00000095648.8	novel	1749	4	NA	NA	350	767	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGAAATTTTTTTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	175886140	175885325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_175885300_175886100
ONT_simulated_read_7725716	chr12	-	2196	15	ISM	ENSMUSG00000042050.9	ENSMUST00000039349.8	3721	22	6804	11069	6804	-11069	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATGAGTGATTTAGGTAA	NA	NA	NA	NA	NA	NA	NA	NA	116219838	116181739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_116181776_116182236_116182299_116182400_116182515_116188506_116188670_116189584_116189758_116193200_116193331_116195308_116195398_116196214_116196327_116196936_116197067_116205298_116205402_116209624_116209842_116210319_116210398_116211614_116211924_116218024_116218117_116219450
ONT_simulated_read_7730835	chr13	-	2214	2	ISM	ENSMUSG00000021614.17	ENSMUST00000109546.9	12427	15	84840	0	84575	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGACTTGTCTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	89805788	89803430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_89805478_89805621
ONT_simulated_read_773175	chr5	-	1668	8	ISM	ENSMUSG00000034826.15	ENSMUST00000038514.15	2352	12	9413	0	9413	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCTGGTGTTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	92573665	92563398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481
ONT_simulated_read_7732242	chr11	+	536	1	ISM	ENSMUSG00000017715.12	ENSMUST00000132676.8	2863	10	37184	0	36613	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	117914301	117914837	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_117914300_117914800
ONT_simulated_read_7732816	chr10	-	383	2	ISM	ENSMUSG00000038510.13	ENSMUST00000183309.8	1296	10	21595	256	21561	-256	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTCGGTTTCCTGAT	NA	NA	NA	NA	NA	NA	NA	NA	40101437	40099678	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_40099917_40101292
ONT_simulated_read_7733054	chr6	-	1697	4	ISM	ENSMUSG00000032641.19	ENSMUST00000116515.9	2075	5	712	284	602	-215	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCTCACGGATGGCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	134874176	134846339	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_134847407_134854179_134854298_134864592_134864749_134873820
ONT_simulated_read_7735390	chr6	-	1149	8	ISM	ENSMUSG00000029821.16	ENSMUST00000170142.8	2133	10	15660	697	15638	-697	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATTGCCCTGGAGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	50223089	50185079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_50185187_50193329_50193404_50196216_50196419_50197968_50198097_50199715_50199881_50204258_50204380_50206265_50206438_50222909
ONT_simulated_read_7742837	chr15	+	322	1	FSM	ENSMUSG00000067547.7	ENSMUST00000146631.2	819	1	588	-91	588	91	mono-exon	FALSE	NA	NA	NA	NA	NA	935	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTGAAGGAAATAAAGGTA	NA	NA	NA	NA	NA	NA	NA	NA	6683991	6684313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_6684000_6684300
ONT_simulated_read_7744289	chr5	+	1539	1	ISM	ENSMUSG00000025854.16	ENSMUST00000026972.8	3582	10	0	54025	0	-54025	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCGACCGCGGGTACCGCC	NA	NA	NA	NA	NA	NA	NA	NA	138740268	138741807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_138740300_138741800
ONT_simulated_read_775212	chr11	-	472	1	ISM	ENSMUSG00000020889.12	ENSMUST00000064941.7	2721	8	6930	0	6930	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCTTCTGTGATGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	98659229	98658757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_98658800_98659200
ONT_simulated_read_7752282	chr8	+	1024	9	FSM	ENSMUSG00000002342.18	ENST00000450333.6	1133	9	1	108	1	-108	multi-exon	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTCAGAGGCATGCTG	NA	NA	NA	NA	NA	NA	NA	NA	70626952	70634682	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_70627057_70629494_70629576_70629890_70629989_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
ONT_simulated_read_7754524	chr2	-	1283	10	ISM	ENSMUSG00000005087.18	ENSMUST00000111194.8	5045	14	48429	2992	48110	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTACGCCATTAACTTGA	NA	NA	NA	NA	NA	NA	NA	NA	102683581	102644477	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_102644683_102652552_102652632_102654605_102654678_102658886_102658956_102661674_102661882_102662827_102662918_102664578_102664681_102669702_102669823_102672605_102672723_102683359
ONT_simulated_read_775483	chr7	-	667	8	ISM	ENSMUSG00000030720.17	ENST00000355477.10	945	11	1431	0	1431	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACAGGAGTTGCTCGA	NA	NA	NA	NA	NA	NA	NA	NA	126178605	126171444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178572
ONT_simulated_read_7755722	chr11	+	1065	5	ISM	ENSMUSG00000040528.16	ENSMUST00000106794.9	1514	7	3675	124	3675	73	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAACTCAAGCTGCCAATA	NA	NA	NA	NA	NA	NA	NA	NA	106645768	106658467	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_106645878_106652011_106652123_106654681_106654775_106656047_106656111_106657778
ONT_simulated_read_775712	chr17	-	850	5	ISM	ENSMUSG00000024436.17	ENSMUST00000025305.16	1079	7	1822	0	1822	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTCCCTTTGGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	36225459	36221270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383
ONT_simulated_read_7757629	chr4	-	1109	8	ISM	ENSMUSG00000040606.15	ENST00000376030.7	2105	14	68453	81	68453	-81	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	161	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGGATGAGGACCTCCAA	NA	NA	NA	NA	NA	NA	NA	NA	141869066	141832180	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_141832266_141834122_141834238_141835856_141836024_141836587_141836690_141839418_141839651_141844395_141844515_141845385_141845592_141868983
ONT_simulated_read_7758541	chr1	+	1062	6	NNC	ENSMUSG00000026111.16	novel	1414	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	NA	NA	NA	NA	NA	NA	NA	37469250	37478068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr1_+_37469364_37470377_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ONT_simulated_read_776178	chr10	-	408	3	ISM	ENSMUSG00000033416.16	ENST00000447813.6	592	5	5967	-1	5967	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGGCTTCTGGGGTTCA	NA	NA	NA	NA	NA	NA	NA	NA	75347098	75344631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_75344804_75345865_75345958_75346954
ONT_simulated_read_7762039	chr14	+	1251	12	ISM	ENSMUSG00000036023.7	ENSMUST00000036126.7	1894	16	0	1565	0	-1565	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAGAGAAGGAAGGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	51045297	51057193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117
ONT_simulated_read_7763515	chr6	+	649	6	ISM	ENSMUSG00000031865.17	ENSMUST00000113907.2	4205	26	8597	2595	8597	-2289	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGCCCGGGGCTGGTGAA	NA	NA	NA	NA	NA	NA	NA	NA	83171524	83174504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_83171574_83171655_83171788_83171969_83172096_83172529_83172673_83172922_83173090_83174472
ONT_simulated_read_7764141	chr9	+	1561	18	ISM	ENSMUSG00000025240.11	ENSMUST00000238984.2	3433	20	-44	6004	-44	-6004	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGATGAATTAGAATCTCA	NA	NA	NA	NA	NA	NA	NA	NA	123358902	123415659	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_123358987_123371408_123371507_123376048_123376124_123377926_123378055_123381732_123381883_123388289_123388350_123389630_123389665_123395455_123395558_123397988_123398075_123399013_123399101_123399561_123399631_123406041_123406122_123408013_123408113_123411312_123411452_123414151_123414222_123414349_123414423_123415408_123415503_123415626
ONT_simulated_read_7764178	chr19	-	2246	17	ISM	ENSMUSG00000025041.18	ENSMUST00000236501.2	3183	18	10955	604	10955	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTCATTCGGTGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	46939404	46876712	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284
ONT_simulated_read_7765849	chr16	+	4066	1	ISM	ENSMUSG00000022957.21	ENSMUST00000114002.9	14012	39	182606	4573	7888	2036	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCAAGGTAATGCAGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	91708846	91712912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_91708800_91712900
ONT_simulated_read_7767036	chr16	+	2005	15	NIC	ENSMUSG00000022707.17	novel	2736	18	NA	NA	0	-8639	combination_of_known_junctions	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGACCACAACACCAACTA	NA	NA	NA	NA	NA	NA	NA	NA	70111021	70357963	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_+_70111184_70157745_70157916_70198621_70198738_70230432_70230559_70231401_70231538_70233815_70233907_70237997_70238208_70275193_70275310_70280708_70280837_70284915_70285015_70288821_70288933_70292115_70292288_70324004_70324190_70325767_70325899_70357911
ONT_simulated_read_776910	chr5	-	842	5	ISM	ENSMUSG00000033434.16	ENSMUST00000077220.14	1617	10	2862	0	2862	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	NA	NA	NA	NA	NA	NA	NA	110253201	110251840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064
ONT_simulated_read_7769589	chr9	-	3352	1	ISM	ENSMUSG00000032252.15	ENSMUST00000034785.8	4626	3	9582	425	9582	-425	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTACTGTATATAACGGCT	NA	NA	NA	NA	NA	NA	NA	NA	61968306	61964954	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_61965000_61968300
ONT_simulated_read_7769969	chr9	-	1274	7	ISM	ENSMUSG00000023249.16	ENSMUST00000112479.9	2030	11	2147	67	1854	-67	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACTCTCACCTAGGCTAC	NA	NA	NA	NA	NA	NA	NA	NA	106351721	106348254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_106348602_106348958_106349115_106350227_106350406_106350631_106350719_106350879_106351033_106351256_106351484_106351595
ONT_simulated_read_7770870	chr8	-	650	7	ISM	ENSMUSG00000001062.19	ENSMUST00000118279.2	2696	15	3256	4762	3256	-4762	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGCCGCGCCTGCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	123977575	123973859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123973949_123974452_123974539_123974705_123974794_123974892_123974946_123975352_123975416_123975500_123975613_123977416
ONT_simulated_read_777388	chr12	-	707	4	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	1317	137	1317	-137	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	452	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGATGTTTGCCGCC	NA	NA	NA	NA	NA	NA	NA	NA	111637455	111635931	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306
ONT_simulated_read_7778463	chr19	-	984	8	ISM	ENSMUSG00000024640.10	ENSMUST00000162053.8	2291	9	3625	989	3625	-989	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCACAACCGAAGACGTTG	NA	NA	NA	NA	NA	NA	NA	NA	15898361	15883479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299
ONT_simulated_read_7779713	chr2	-	155	2	ISM	ENSMUSG00000026988.16	ENST00000392796.7	1264	7	16851	106	16851	-106	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAAGAGCTCAGGGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	59692024	59689059	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_59689095_59691904
ONT_simulated_read_7785170	chr12	-	665	2	ISM	ENSMUSG00000021179.9	ENST00000354366.8	3454	13	7152	16482	7152	-16482	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTGCACCCCAACAACAC	NA	NA	NA	NA	NA	NA	NA	NA	100110443	100108338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_100108558_100109997
ONT_simulated_read_7785946	chr3	+	1743	6	ISM	ENSMUSG00000038861.15	ENSMUST00000072287.12	3692	11	145	10234	0	-9537	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTACAGCCTTCAAACGAG	NA	NA	NA	NA	NA	NA	NA	NA	94882186	94903920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_94882397_94891293_94892231_94900276_94900505_94901471_94901700_94903145_94903256_94903890
ONT_simulated_read_7789363	chr5	+	564	4	ISM	ENSMUSG00000061882.13	ENSMUST00000165148.4	3920	13	15697	15550	15697	-15550	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTACCCTATGCAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	124084448	124092408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_124084519_124089261_124089351_124089814_124089931_124092119
ONT_simulated_read_7792391	chr2	+	796	1	ISM	ENSMUSG00000005505.13	ENSMUST00000111464.8	2343	4	4424	602	4421	-602	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATGTGTTAGTTTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	90739507	90740303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_90739500_90740300
ONT_simulated_read_779410	chr1	+	1543	7	ISM	ENSMUSG00000039354.17	ENSMUST00000152225.2	2994	17	2023	34241	2023	-34241	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCAGCTAAAAACCCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	72624796	72638052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929
ONT_simulated_read_779424	chr4	-	576	6	ISM	ENSMUSG00000073771.12	ENSMUST00000183310.2	1620	8	1499	842	1499	-842	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAAGCGCCCTGGAAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	116981316	116978213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_116978294_116978394_116978527_116978610_116978680_116979415_116979476_116980925_116980980_116981135
ONT_simulated_read_7796190	chr8	-	1396	1	ISM	ENSMUSG00000031781.15	ENSMUST00000162538.9	4359	9	15151	2008	8707	749	mono-exon	FALSE	NA	NA	NA	NA	NA	464	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCCTAGTCTACAGAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	95549835	95548439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_95548400_95549800
ONT_simulated_read_7796599	chr7	-	1303	10	ISM	ENSMUSG00000030738.12	ENST00000564243.5	2727	20	3095	5307	3095	-5307	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGCCAAGGCCTGACAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	126162267	126151466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175
ONT_simulated_read_779729	chr7	+	1945	15	ISM	ENSMUSG00000030852.19	ENST00000369004.7	3627	17	36603	477	12682	-400	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAAGCTAACTCTGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	130331112	130366038	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_130331559_130333260_130333297_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130345273_130345415_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
ONT_simulated_read_7797558	chr12	-	2074	20	ISM	ENSMUSG00000020982.10	ENSMUST00000021368.10	4732	33	16145	1314	16145	-1314	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGTATTTCCTAAAATATT	NA	NA	NA	NA	NA	NA	NA	NA	69387794	69358609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_69358855_69359028_69359109_69359198_69359243_69359339_69359441_69361189_69361223_69363017_69363213_69363516_69363595_69364800_69364955_69367146_69367197_69367300_69367344_69368874_69369125_69371005_69371127_69371206_69371266_69371692_69371751_69374407_69374521_69377861_69377925_69378645_69378750_69384592_69384682_69386492_69386557_69387664
ONT_simulated_read_7799890	chr3	-	675	1	ISM	ENSMUSG00000056270.4	ENSMUST00000070284.4	1183	2	636	433	636	-433	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATCTCTTTCAAGCCTC	NA	NA	NA	NA	NA	NA	NA	NA	92030618	92029943	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_92029900_92030600
ONT_simulated_read_7800124	chr16	-	382	1	ISM	ENSMUSG00000022861.18	ENST00000344484.8	3315	24	187675	484	187675	287	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACACTCCTGTAAGGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	22288066	22287684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_22287700_22288100
ONT_simulated_read_7800198	chr13	-	2615	15	ISM	ENSMUSG00000021693.21	ENSMUST00000117423.9	2023	20	9387	-935	9387	72	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTAATGTACTGTTAAAG	NA	NA	NA	NA	NA	NA	NA	NA	107123877	107097695	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_107098733_107100848_107100985_107101525_107101628_107105145_107105297_107111002_107111071_107111878_107111990_107113163_107113369_107113493_107113637_107114531_107114624_107115479_107115544_107115984_107116076_107119031_107119195_107119699_107119755_107121571_107121668_107123776
ONT_simulated_read_7800675	chr17	-	456	3	ISM	ENSMUSG00000063888.8	ENSMUST00000233192.2	1310	6	3255	525	2481	-525	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGCTGCCTGCTGCAC	NA	NA	NA	NA	NA	NA	NA	NA	47090327	47088968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_47089198_47089335_47089446_47090210
ONT_simulated_read_7800923	chr8	-	1356	10	ISM	ENSMUSG00000019470.13	ENSMUST00000019614.13	2677	19	6968	807	6968	-807	internal_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGCTTCACAGATGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	3664348	3660893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244
ONT_simulated_read_780106	chr2	-	1715	11	FSM	ENSMUSG00000027104.19	ENST00000409437.5	3724	11	-1	2010	-1	-268	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTATCATTTATACCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	73704085	73648877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73700966_73701030_73704013
ONT_simulated_read_7802459	chr2	-	1498	15	ISM	ENSMUSG00000027620.17	ENSMUST00000109587.9	2810	17	1007	1044	349	-748	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAACTGCTACGAAGACT	NA	NA	NA	NA	NA	NA	NA	NA	156021151	155990202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096
ONT_simulated_read_7803710	chr18	-	1579	1	FSM	ENSMUSG00000117634.2	ENSMUST00000235010.2	2365	1	360	426	360	-426	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGATCAGTTTGTCATTG	NA	NA	NA	NA	NA	NA	NA	NA	11790481	11788902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_11788900_11790500
ONT_simulated_read_7804984	chr11	-	721	1	ISM	ENSMUSG00000006057.16	ENSMUST00000090541.12	4715	5	2469	3629	1836	506	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCGGGGAAGGGGAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	95964027	95963306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_95963300_95964000
ONT_simulated_read_7806776	chr9	-	650	1	ISM	ENSMUSG00000032312.8	ENSMUST00000034863.8	2749	13	18171	187	6585	80	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCCCATCCCGTGTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	57534765	57534115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_57534100_57534800
ONT_simulated_read_78077	chr2	-	344	3	ISM	ENSMUSG00000087179.9	ENSMUST00000137463.8	874	4	1314	214	1314	-214	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGGTACTATTAACTACA	NA	NA	NA	NA	NA	NA	NA	NA	156680426	156675182	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_156675347_156679742_156679834_156680337
ONT_simulated_read_7810307	chr10	+	1024	8	ISM	ENSMUSG00000039994.16	ENSMUST00000105245.3	4402	29	2335	8662	2335	-8573	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCGCAGGTGAGAGGGGCG	NA	NA	NA	NA	NA	NA	NA	NA	128076269	128080148	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938
ONT_simulated_read_7811745	chr18	+	2047	16	ISM	ENSMUSG00000024589.19	ENST00000635997.1	4363	27	90571	-88	90571	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTCTACTTTATTAGAAT	NA	NA	NA	NA	NA	NA	NA	NA	65307137	65346475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_65307314_65311989_65312068_65314398_65314454_65319396_65319456_65324507_65324574_65326146_65326377_65328130_65328253_65328985_65329057_65331701_65331798_65336946_65337021_65338703_65338765_65341119_65341180_65341462_65341571_65342723_65342821_65343333_65343407_65345854
ONT_simulated_read_7811922	chr17	-	846	6	ISM	ENSMUSG00000024037.14	ENSMUST00000171171.9	4154	11	255	6921	255	-4431	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGAACTGCTGCTTTCTT	NA	NA	NA	NA	NA	NA	NA	NA	31731470	31720216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_31720250_31721744_31721858_31722483_31722641_31728742_31728887_31729551_31729621_31731140
ONT_simulated_read_7814099	chr6	-	1059	1	NIC	ENSMUSG00000033216.10	novel	2679	7	NA	NA	188135	0	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGTGATCAAATGACTT	NA	NA	NA	NA	NA	NA	NA	NA	88235374	88234315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_88234300_88235400
ONT_simulated_read_7815490	chrX	-	285	4	ISM	ENSMUSG00000002012.14	ENST00000370142.5	1464	11	1943	729	1943	-729	internal_fragment	FALSE	canonical	NA	NA	NA	NA	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGGGACAAAGCCCAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	72700913	72700379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_72700421_72700517_72700606_72700676_72700756_72700836
ONT_simulated_read_7820393	chr5	-	1490	4	ISM	ENSMUSG00000025856.16	ENSMUST00000076095.14	2060	6	6611	117	6527	-117	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	296	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGAACTTTGTATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	138974181	138961885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103
ONT_simulated_read_7822519	chr3	+	574	7	ISM	ENSMUSG00000027940.19	ENST00000368530.7	1116	10	14778	108	7741	-102	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCCTACAGCCTTAGGG	NA	NA	NA	NA	NA	NA	NA	NA	89994762	89999335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_89998319_89998399_89999237
ONT_simulated_read_7823188	chr13	-	1321	1	ISM	ENSMUSG00000021376.12	ENSMUST00000021806.11	2708	9	17765	582	17679	-582	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGGTCTTATAACCCACA	NA	NA	NA	NA	NA	NA	NA	NA	47178921	47177600	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_47177600_47178900
ONT_simulated_read_7824958	chr10	-	388	1	ISM	ENSMUSG00000019866.16	ENSMUST00000200401.2	7525	22	196913	917	52429	-915	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATACAGATTCCCTTAGAG	NA	NA	NA	NA	NA	NA	NA	NA	43827936	43827548	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_43827500_43827900
ONT_simulated_read_7825631	chr6	+	1097	6	ISM	ENSMUSG00000036371.7	ENSMUST00000203436.3	1667	8	4896	0	4808	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTAAAGCTTTCACTTCA	NA	NA	NA	NA	NA	NA	NA	NA	67248862	67261290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_67249012_67249140_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
ONT_simulated_read_7825802	chr15	+	1521	11	ISM	ENSMUSG00000033088.20	ENSMUST00000109687.9	2570	14	65	3539	65	-3539	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTCATCGCCTCGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	78867305	78886525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_78867409_78872091_78872149_78875016_78875086_78875184_78875275_78875528_78875639_78877103_78877633_78878241_78878353_78883996_78884145_78885720_78885824_78886247_78886408_78886484
ONT_simulated_read_7826024	chr16	-	618	3	ISM	ENSMUSG00000022722.19	ENSMUST00000023405.16	1696	8	17848	435	11201	-56	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGTAATTAGTATATATGA	NA	NA	NA	NA	NA	NA	NA	NA	59441682	59433746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_59434208_59439157_59439214_59441581
ONT_simulated_read_7826414	chr2	+	1725	11	ISM	ENSMUSG00000026843.16	ENSMUST00000113482.8	3268	19	30620	598	30454	-591	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTCTAAGACCTCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	31493282	31506940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
ONT_simulated_read_7826597	chr11	-	954	2	ISM	ENSMUSG00000097328.8	ENSMUST00000181810.8	1435	7	8486	0	8486	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAGGTACCAGAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	69578189	69577075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69577918_69578077
ONT_simulated_read_7828753	chr1	-	1742	1	ISM	ENSMUSG00000041303.8	ENSMUST00000041638.8	4582	18	40988	238	40988	-238	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTTTCTTGGAAAATAAC	NA	NA	NA	NA	NA	NA	NA	NA	54437142	54435400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_54435400_54437100
ONT_simulated_read_7830383	chr1	-	734	1	ISM	ENSMUSG00000026437.12	ENSMUST00000027697.12	4355	16	24747	1967	24668	560	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGAACTCTGACCTAGC	NA	NA	NA	NA	NA	NA	NA	NA	132042675	132041941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_132041900_132042700
ONT_simulated_read_7834122	chr5	-	2577	15	ISM	ENSMUSG00000006641.13	ENSMUST00000202520.4	3248	17	4553	209	4553	-208	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGGACAGTTTTCCACAT	NA	NA	NA	NA	NA	NA	NA	NA	31200793	31193588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293
ONT_simulated_read_7834442	chrX	+	616	6	ISM	ENSMUSG00000023092.17	ENSMUST00000023854.10	2356	7	78	2855	0	-1744	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATCAGCCCTGGCATGCC	NA	NA	NA	NA	NA	NA	NA	NA	55777224	55835851	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55835823
ONT_simulated_read_783781	chr9	-	2053	1	ISM	ENSMUSG00000097073.8	ENSMUST00000180723.8	3177	5	1799	67	1799	-67	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGTACAGGATGCTGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	88479497	88477444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_88477400_88479500
ONT_simulated_read_7837963	chr4	-	697	6	ISM	ENSMUSG00000050812.19	ENSMUST00000102889.10	7045	49	76509	29726	75687	1917	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTCCCATGGGTTTTAG	NA	NA	NA	NA	NA	NA	NA	NA	58836240	58828636	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_58828653_58830333_58830458_58832703_58832806_58833925_58834099_58834496_58834660_58836121
ONT_simulated_read_783806	chr9	+	819	6	FSM	ENSMUSG00000032268.14	ENST00000544476.1	821	6	2	0	2	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGTGAGTGTGGGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	49020301	49026912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_49020438_49020641_49020756_49024423_49024603_49025793_49025893_49026332_49026476_49026764
ONT_simulated_read_7838109	chrX	+	380	4	ISM	ENSMUSG00000025287.16	ENSMUST00000026324.10	1752	15	62	24614	62	-20965	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCACCGAGGAAAATGAGGG	NA	NA	NA	NA	NA	NA	NA	NA	154045500	154056036	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967
ONT_simulated_read_7838677	chr2	+	2599	4	ISM	ENSMUSG00000027523.21	ENSMUST00000087871.11	3903	13	0	9973	0	-1313	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGGAGCAACAGCGATGG	NA	NA	NA	NA	NA	NA	NA	NA	174169560	174178564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_174169735_174169900_174172228_174176004_174176078_174178539
ONT_simulated_read_7840598	chr3	+	361	3	ISM	ENSMUSG00000068823.11	ENSMUST00000199420.5	4185	20	8482	19399	8431	-18362	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGACCTCTTACGGATT	NA	NA	NA	NA	NA	NA	NA	NA	102936410	102946103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_102936529_102943890_102944038_102946007
ONT_simulated_read_7843595	chr12	-	274	4	ISM	ENSMUSG00000021176.7	ENSMUST00000223114.2	1122	7	6028	375	5058	-375	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGAACCATGGGCAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	99844643	99685309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_99685363_99820868_99820960_99821796_99821899_99844615
ONT_simulated_read_7847414	chr19	+	154	1	FSM	ENSMUSG00000118052.2	ENSMUST00000235308.2	278	1	0	124	0	-124	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGAAGAGCAGGAGAGACCC	NA	NA	NA	NA	NA	NA	NA	NA	3255792	3255946	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_3255800_3255900
ONT_simulated_read_7849609	chr17	+	665	4	ISM	ENSMUSG00000023938.9	ENSMUST00000024733.9	3349	22	0	11893	0	-11893	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCCACTATGACCTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	45817766	45819876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790
ONT_simulated_read_784974	chr7	-	1154	1	ISM	ENSMUSG00000002608.9	ENSMUST00000002683.3	3032	5	6006	823	6006	-823	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACAGAGCCCCCTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	25412507	25411353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_25411400_25412500
ONT_simulated_read_7850458	chrX	+	798	4	ISM	ENSMUSG00000037636.7	ENSMUST00000047655.7	1111	5	52	1646	52	-1646	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCGTGAAAACCCAAGGGGT	NA	NA	NA	NA	NA	NA	NA	NA	36007363	36039209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_36007672_36015785_36016028_36021420_36021594_36039134
ONT_simulated_read_7857621	chr6	-	288	1	ISM	ENSMUSG00000030315.16	ENSMUST00000032459.14	2028	5	5	60105	5	-59439	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGGCTGGGCCTCTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	114898777	114898489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_114898500_114898800
ONT_simulated_read_7858070	chr5	-	836	1	ISM	ENSMUSG00000029191.17	ENSMUST00000203581.3	4689	25	72454	425	72454	327	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCATGCAGTCTTAGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	65420453	65419617	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_65419600_65420500
ONT_simulated_read_7858602	chr18	-	1283	1	ISM	ENSMUSG00000032735.16	ENST00000326685.11	3998	20	110469	774	13266	-703	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTTGGAGATGCCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	61934451	61933168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_61933200_61934500
ONT_simulated_read_7859341	chr1	+	667	4	ISM	ENSMUSG00000026172.13	ENSMUST00000027358.11	1890	8	74	2159	0	-1840	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGGAAGGGAAGACTGT	NA	NA	NA	NA	NA	NA	NA	NA	74627532	74629443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_74627647_74628644_74629038_74629118_74629259_74629423
ONT_simulated_read_7859756	chr16	-	945	7	ISM	ENSMUSG00000064115.14	ENST00000405615.2	1304	10	140462	0	140462	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCAGGCTTCAAGTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	66609756	66459978	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_66460098_66461266_66461393_66528270_66528391_66544084_66544264_66568492_66568584_66581603_66581775_66609617
ONT_simulated_read_7862652	chr11	-	1024	9	ISM	ENSMUSG00000042506.16	ENSMUST00000041683.9	4434	13	12076	2703	12076	-2703	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGGAATACGAGTAGCCT	NA	NA	NA	NA	NA	NA	NA	NA	61053805	61045313	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_61045340_61046005_61046156_61046593_61046657_61047996_61048089_61049117_61049245_61050030_61050190_61051397_61051504_61052139_61052288_61053652
ONT_simulated_read_7865379	chr10	-	578	3	ISM	ENSMUSG00000020251.14	ENSMUST00000020485.10	2153	10	35810	780	35777	-780	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCAAGGCCCACACAGA	NA	NA	NA	NA	NA	NA	NA	NA	82490674	82487046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_82487353_82488701_82488815_82490515
ONT_simulated_read_7869481	chr17	+	488	1	FSM	ENSMUSG00000096361.3	ENSMUST00000177586.3	375	1	0	-113	0	113	mono-exon	FALSE	NA	NA	NA	NA	NA	807	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCCTTCTTTTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	47721287	47721775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_47721300_47721800
ONT_simulated_read_787087	chr4	-	2888	1	ISM	ENSMUSG00000041058.16	ENSMUST00000108246.9	6440	25	97225	578	66680	-578	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAGTTCAGTGGTGAAC	NA	NA	NA	NA	NA	NA	NA	NA	19611768	19608880	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_19608900_19611800
ONT_simulated_read_787316	chrX	+	695	3	ISM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	3	1052	3	-1052	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	288	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTCACATCTTCATCAG	NA	NA	NA	NA	NA	NA	NA	NA	36059306	36061408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_36059495_36060495_36060983_36061388
ONT_simulated_read_7873956	chr2	-	979	7	ISM	ENSMUSG00000049252.18	ENST00000389484.8	15286	89	1283180	42510	-50262	-42220	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGGGTCACTGTATTATAA	NA	NA	NA	NA	NA	NA	NA	NA	40567610	40527765	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_40527893_40537098_40537261_40547375_40547541_40551462_40551589_40553627_40553802_40555084_40555202_40567502
ONT_simulated_read_7875116	chr1	+	578	1	ISM	ENSMUSG00000026269.15	ENSMUST00000027487.15	3337	11	70	9411	70	-9411	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCACCAGCCCTTCCAGGTC	NA	NA	NA	NA	NA	NA	NA	NA	92838574	92839152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_92838600_92839200
ONT_simulated_read_7875181	chr11	-	920	1	ISM	ENSMUSG00000020358.18	ENSMUST00000074669.10	2370	7	5403	425	5403	344	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTCTGTAGCCCTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	51492271	51491351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_51491400_51492300
ONT_simulated_read_7876995	chr1	-	572	2	ISM	ENSMUSG00000026154.5	ENSMUST00000027338.4	683	3	2350	0	2350	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTATTATTTTATTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	24042387	24035019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_24035442_24042237
ONT_simulated_read_7877228	chr13	-	1036	2	ISM	ENSMUSG00000021327.20	ENSMUST00000070785.16	2561	6	8644	776	2449	-385	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	3105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGCAGAAGTCATAGGC	NA	NA	NA	NA	NA	NA	NA	NA	21578239	21571948	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_21572877_21578131
ONT_simulated_read_7879775	chr4	+	421	4	ISM	ENSMUSG00000041351.17	ENST00000542643.6	3045	21	8261	9464	8261	-8699	internal_fragment	FALSE	canonical	NA	NA	NA	NA	809	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCGGTGGGGGTGGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	137446182	137447707	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_137446342_137446638_137446711_137447220_137447308_137447604
ONT_simulated_read_7879992	chr17	-	2192	20	NIC	ENSMUSG00000052752.16	novel	2504	20	NA	NA	0	-315	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCCTCCTCTGGGCACCA	NA	NA	NA	NA	NA	NA	NA	NA	24738182	24728138	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738104
ONT_simulated_read_7880410	chr9	+	1075	10	ISM	ENSMUSG00000010057.9	ENSMUST00000010201.9	1441	11	35	434	35	-434	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTTATCCGGAGACTACA	NA	NA	NA	NA	NA	NA	NA	NA	107419459	107422471	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107421834_107421945_107422040_107422112_107422231_107422443
ONT_simulated_read_7885449	chr3	+	781	8	ISM	ENSMUSG00000033386.11	ENSMUST00000195905.5	6823	15	12667	5815	12667	-1116	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCACAGAAGACCTACGCAA	NA	NA	NA	NA	NA	NA	NA	NA	116684542	116696011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962
ONT_simulated_read_7885704	chr9	-	1360	7	ISM	ENSMUSG00000053110.14	ENSMUST00000086580.12	4115	8	2885	2277	2613	-122	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTAACTCTGCTATGATAA	NA	NA	NA	NA	NA	NA	NA	NA	8001704	7934276	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_7934734_7936515_7936629_7938408_7938540_7952953_7953136_7962289_7962404_7973796_7973913_8001457
ONT_simulated_read_7891301	chr1	-	914	1	ISM	ENSMUSG00000019699.17	ENSMUST00000111160.9	4735	13	223318	2421	223318	-2403	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCCTGCTGTCGCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	176853015	176852101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_176852100_176853000
ONT_simulated_read_7893331	chr10	-	658	3	ISM	ENSMUSG00000020198.9	ENSMUST00000020420.9	4805	31	33406	562	33406	-562	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGATAAGGCCAGCTGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	80544692	80543351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80543818_80544291_80544372_80544580
ONT_simulated_read_7894072	chr1	-	1734	10	ISM	ENSMUSG00000026670.16	ENSMUST00000111351.10	2287	11	8012	342	8012	-341	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGACCCAGATGACTGGA	NA	NA	NA	NA	NA	NA	NA	NA	169994503	169969912	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_169970142_169970965_169971033_169975564_169975616_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194
ONT_simulated_read_7895000	chr12	+	1786	1	FSM	ENSMUSG00000073233.5	ENSMUST00000101625.5	1008	1	0	-778	0	778	mono-exon	FALSE	NA	NA	NA	NA	NA	433	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATCAGGTAGAGGTAGGC	NA	NA	NA	NA	NA	NA	NA	NA	7909899	7911685	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_7909900_7911700
ONT_simulated_read_7896698	chr10	-	696	1	ISM	ENSMUSG00000035365.16	ENSMUST00000048518.16	3594	11	53764	1050	53764	-1050	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTACATCGTTTCCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	87929039	87928343	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_87928300_87929000
ONT_simulated_read_7896775	chr8	-	585	2	ISM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	2567	966	2567	-966	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGGCCAGCTGGCCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	27616141	27614357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_27614649_27615847
ONT_simulated_read_7898940	chr16	-	2014	19	ISM	ENSMUSG00000041720.15	ENST00000255882.11	6339	55	108158	-2	5784	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTAGCCTAGCACCTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	17115524	17098429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17098485_17098580_17098665_17098883_17098974_17099712_17099873_17100149_17100271_17100480_17100607_17100686_17100792_17101163_17101274_17102310_17102382_17102459_17102533_17103070_17103142_17104515_17104646_17108978_17109100_17110743_17110798_17111706_17111875_17113235_17113327_17114759_17114954_17115073_17115154_17115414
ONT_simulated_read_7899	chr16	-	1396	10	NIC	ENSMUSG00000022788.17	novel	8342	17	NA	NA	29838	-39	combination_of_known_splicesites	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATCTCCCTGGACCCAA	NA	NA	NA	NA	NA	NA	NA	NA	16292248	16240465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_16240685_16241779_16241921_16243630_16243772_16253804_16253931_16254396_16254490_16271855_16272029_16279457_16279605_16279864_16279924_16287567_16287707_16292090
ONT_simulated_read_7900788	chr14	+	2047	1	ISM	ENSMUSG00000021962.10	ENSMUST00000022535.9	5576	10	43862	1543	43800	-1543	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTAGCCTAGCTTGCATGT	NA	NA	NA	NA	NA	NA	NA	NA	30245430	30247477	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_30245400_30247500
ONT_simulated_read_7900872	chr12	-	676	3	ISM	ENSMUSG00000041846.16	ENST00000555462.5	3174	13	41022	445	41022	-445	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTTAGGGGAAGACATAAG	NA	NA	NA	NA	NA	NA	NA	NA	101008870	101006746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_101007039_101008083_101008311_101008713
ONT_simulated_read_7902368	chr5	-	401	4	ISM	ENSMUSG00000029416.18	ENSMUST00000031367.15	2732	8	12809	6266	12809	-6266	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCCCATCTGGTGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	127681671	127678993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_127679078_127680756_127680926_127681174_127681253_127681601
ONT_simulated_read_7904906	chr7	-	860	4	ISM	ENSMUSG00000025486.18	ENSMUST00000106048.10	1416	7	5442	0	1457	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	140456340	140443582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266
ONT_simulated_read_7905250	chr3	+	2061	14	ISM	ENSMUSG00000027680.16	ENSMUST00000198051.5	2127	15	19429	0	19426	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTTGTTTTCAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	34093682	34123494	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34123065
ONT_simulated_read_7906555	chr10	-	1835	6	ISM	ENSMUSG00000039166.17	ENSMUST00000041984.14	2092	8	15123	0	15066	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTTCTTACAGTTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	25159939	25046019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_25047147_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25159790
ONT_simulated_read_7907569	chr9	-	480	5	ISM	ENSMUSG00000032047.6	ENSMUST00000034547.6	3405	12	12258	11465	12258	-11465	internal_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTACAATAAAATTCATATGG	NA	NA	NA	NA	NA	NA	NA	NA	53509424	53503286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_53503412_53505705_53505807_53505993_53506090_53506582_53506701_53509384
ONT_simulated_read_7907981	chr9	-	1092	1	ISM	ENSMUSG00000037801.14	ENST00000358767.7	2938	11	103249	0	103249	0	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTTTTGTTTAGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	63329248	63328156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_63328200_63329200
ONT_simulated_read_7910336	chr15	+	285	1	FSM	ENSMUSG00000037085.9	ENSMUST00000036937.9	4454	1	0	4169	0	-4169	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGGCAGCACTTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	58744522	58744807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_58744500_58744800
ONT_simulated_read_7912521	chr7	-	1560	1	ISM	ENSMUSG00000030894.6	ENSMUST00000033184.6	3558	13	5463	402	4957	-402	mono-exon	FALSE	NA	NA	NA	NA	NA	358	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCCATGTTCTTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	105395979	105394419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105394400_105396000
ONT_simulated_read_7914287	chr9	+	932	9	ISM	ENSMUSG00000055720.11	ENSMUST00000216841.2	1426	11	1600	6795	1600	-6795	internal_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCCAATGTCCTCTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	57819916	57830454	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437
ONT_simulated_read_7918968	chr4	-	749	1	ISM	ENSMUSG00000044813.16	ENSMUST00000061986.12	2244	6	106207	97	106207	-97	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAACCGTTAGATGTCAAGG	NA	NA	NA	NA	NA	NA	NA	NA	45424123	45423374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_45423400_45424100
ONT_simulated_read_792115	chr8	-	3693	1	ISM	ENSMUSG00000037316.10	ENSMUST00000038498.10	4876	5	16896	161	16896	-161	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAATTTGTTTGACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	26258419	26254726	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_26254700_26258400
ONT_simulated_read_7921243	chr13	+	409	4	ISM	ENSMUSG00000021537.10	ENSMUST00000022009.10	1226	5	201	5122	201	-5122	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGATAAGCTTGAGGAAT	NA	NA	NA	NA	NA	NA	NA	NA	81931396	81940152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_81931477_81932759_81932896_81934961_81935077_81940074
ONT_simulated_read_7921966	chr13	-	422	3	ISM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	11512	3019	11512	-3019	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTGGGCCAGGGCTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	55499084	55494664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_55494851_55496127_55496248_55498968
ONT_simulated_read_7927100	chr19	-	942	8	ISM	ENSMUSG00000036748.17	ENSMUST00000236046.2	1167	10	5914	60	5914	-58	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTAGTGTTCTATTCTT	NA	NA	NA	NA	NA	NA	NA	NA	46321133	46319042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056
ONT_simulated_read_7927923	chr14	+	1344	8	ISM	ENSMUSG00000056234.16	ENSMUST00000163336.8	4065	10	46	3401	46	-2793	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGAGGAAGTGTGTAAAGC	NA	NA	NA	NA	NA	NA	NA	NA	31881867	31898411	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_31881968_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895
ONT_simulated_read_792803	chr7	-	192	2	ISM	ENSMUSG00000101970.9	ENST00000629346.2	871	3	842	178	842	-56	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCTTCATTCTTTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	73190652	73189604	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_73189664_73190519
ONT_simulated_read_792875	chr10	-	687	5	ISM	ENSMUSG00000036955.17	ENST00000675576.1	2257	6	7970	1085	7970	-1085	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	188	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCGCTCTGTTCAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	62406194	62395377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62395663_62399014_62399131_62401815_62401901_62405237_62405422_62406177
ONT_simulated_read_7930538	chr14	+	968	7	ISM	ENSMUSG00000021823.11	ENSMUST00000022369.9	5267	21	0	38603	0	-38603	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCTCCGTGACCCCAATG	NA	NA	NA	NA	NA	NA	NA	NA	20979465	21045141	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_20979757_21017605_21017677_21032641_21032793_21033435_21033545_21035694_21035818_21037025_21037187_21045079
ONT_simulated_read_7933498	chr2	+	1651	12	ISM	ENSMUSG00000027130.16	ENSMUST00000110987.9	3722	19	77	9087	0	-9087	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCCATCCCCGTGGGTG	NA	NA	NA	NA	NA	NA	NA	NA	112097163	112177287	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_112097438_112163727_112163823_112164713_112164846_112166120_112166268_112167702_112167758_112168203_112168335_112169590_112169833_112172175_112172391_112174173_112174333_112174483_112174583_112174832_112174891_112177243
ONT_simulated_read_7934214	chr11	-	330	2	ISM	ENSMUSG00000035042.3	ENSMUST00000035938.3	532	3	1256	64	1256	-64	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGGCTCTGCACAGCAAAC	NA	NA	NA	NA	NA	NA	NA	NA	83420088	83416667	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_83416891_83419981
ONT_simulated_read_7934350	chr11	+	541	4	ISM	ENSMUSG00000001555.11	ENSMUST00000001595.10	2584	10	148	3607	79	-2895	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTACATCGGCTCTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	100306670	100312043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_100306852_100311225_100311372_100311716_100311907_100312019
ONT_simulated_read_7935132	chr17	-	549	1	ISM	ENSMUSG00000092471.2	ENST00000435122.3	1722	9	2192	22	2189	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTCAAGGGAAGAGAGTC	NA	NA	NA	NA	NA	NA	NA	NA	34939037	34938488	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_34938500_34939000
ONT_simulated_read_7935136	chr11	-	2050	1	NIC	ENSMUSG00000056687.10	novel	1793	3	NA	NA	6226	-157	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTCTGAGTTCGAGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	109247810	109245760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_109245800_109247800
ONT_simulated_read_793623	chr7	-	1695	4	ISM	ENSMUSG00000031078.16	ENSMUST00000033407.13	2913	17	30647	2	30647	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGTGTGATCTTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	143993835	143989471	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745
ONT_simulated_read_7936321	chr9	-	1070	5	ISM	ENSMUSG00000039542.17	ENSMUST00000166811.9	3088	18	275226	77	46257	-77	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCATTTAAAATTCAGACAA	NA	NA	NA	NA	NA	NA	NA	NA	49434946	49416424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_49416864_49419888_49420006_49421004_49421213_49431334_49431516_49434821
ONT_simulated_read_7936375	chr11	-	144	2	ISM	ENSMUSG00000018171.10	ENSMUST00000018315.10	2787	12	19093	79655	19093	-79655	internal_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGCTACGTATTATGTGG	NA	NA	NA	NA	NA	NA	NA	NA	86555569	86554345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_86554400_86555479
ONT_simulated_read_793960	chr1	+	457	3	ISM	ENSMUSG00000026048.17	ENSMUST00000027214.4	3907	15	62	23078	62	-23078	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCGAGAAAAACCACCGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	44187068	44197342	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_44187311_44196096_44196273_44197303
ONT_simulated_read_7940595	chr11	-	820	1	NIC	ENSMUSG00000018160.16	novel	2627	18	NA	NA	39857	-122	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTGTTCTGTAAATAAT	NA	NA	NA	NA	NA	NA	NA	NA	98043924	98043104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_98043100_98043900
ONT_simulated_read_7940868	chr16	+	342	3	ISM	ENSMUSG00000022774.14	ENSMUST00000023460.7	2070	4	133	2104	40	-2104	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGGGATGCAGGCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	31767463	31775186	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_31767546_31772942_31773125_31775108
ONT_simulated_read_7943290	chr13	-	2084	1	ISM	ENSMUSG00000001707.9	ENSMUST00000001757.9	2553	4	12768	0	12768	0	mono-exon	FALSE	NA	NA	NA	NA	NA	366	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGTTGGTGACAACCTATC	NA	NA	NA	NA	NA	NA	NA	NA	38830266	38828182	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_38828200_38830300
ONT_simulated_read_7943552	chr5	-	624	5	ISM	ENSMUSG00000036285.11	ENSMUST00000047860.9	2288	7	3610	319	3610	-319	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAAGGGACTGCTCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	77454321	77442347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_77442404_77444932_77445051_77447504_77447622_77452032_77452165_77454120
ONT_simulated_read_7943828	chr1	-	2005	11	ISM	ENSMUSG00000026335.17	ENSMUST00000097625.10	4102	26	242414	141	124037	-136	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTATTTAAATTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	97780943	97748960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_97749714_97750660_97750715_97753561_97753763_97759179_97759234_97762132_97762242_97765687_97765804_97768004_97768206_97768423_97768635_97769956_97770030_97772320_97772438_97780827
ONT_simulated_read_7944068	chr11	-	1887	4	ISM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	23083	1432	23083	-1432	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGGCGTTTTGAATATG	NA	NA	NA	NA	NA	NA	NA	NA	97055624	97051971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550
ONT_simulated_read_7945303	chr9	-	2820	6	ISM	ENSMUSG00000031935.10	ENSMUST00000034411.10	3964	12	8190	0	8062	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGGGCATAGTGGCATA	NA	NA	NA	NA	NA	NA	NA	NA	15183037	15171646	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_15173735_15174899_15175060_15176647_15176766_15178709_15178848_15181638_15181824_15182906
ONT_simulated_read_7946850	chr2	+	391	2	ISM	ENSMUSG00000000359.4	ENSMUST00000000369.4	1663	5	2	6998	2	-6998	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCACCCTCTGCTCCAT	NA	NA	NA	NA	NA	NA	NA	NA	152468872	152470116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_152468967_152469819
ONT_simulated_read_794701	chr7	+	1849	11	NIC	ENSMUSG00000035203.17	novel	2334	11	NA	NA	0	-242	combination_of_known_junctions	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAACGCTCACCCTGAACCA	NA	NA	NA	NA	NA	NA	NA	NA	5083291	5100623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_+_5083477_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
ONT_simulated_read_7949040	chr8	+	127	2	ISM	ENSMUSG00000004567.17	ENSMUST00000004683.13	2065	14	77	9462	77	-9462	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGACCCAGGTGGGGACC	NA	NA	NA	NA	NA	NA	NA	NA	3550533	3555770	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_3550628_3555737
ONT_simulated_read_7951647	chr13	-	3263	1	FSM	ENSMUSG00000114072.2	ENSMUST00000221966.2	395	1	-2434	-434	-2434	434	mono-exon	FALSE	NA	NA	NA	NA	NA	2152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCAGACATGGTGCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	64511985	64508722	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_64508700_64512000
ONT_simulated_read_795397	chr15	+	758	5	ISM	ENSMUSG00000022270.17	ENSMUST00000022881.15	3248	9	0	6995	0	-5645	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTCATACTCAGCTACCT	NA	NA	NA	NA	NA	NA	NA	NA	25843265	25966778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_25843699_25889566_25889674_25895198_25895230_25964309_25964437_25966718
ONT_simulated_read_7954189	chr4	-	470	1	FSM	ENSMUSG00000070923.5	ENSMUST00000094993.3	4174	1	623	3081	623	-3081	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGGAACTTGAGCTCTTCAA	NA	NA	NA	NA	NA	NA	NA	NA	88640079	88639609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_88639600_88640100
ONT_simulated_read_7960583	chr10	-	1586	11	ISM	ENSMUSG00000020074.8	ENST00000630771.2	3771	24	11659	12311	11613	-11382	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACGACAGCGTCAAGAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	62616397	62592422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_62592454_62595872_62596059_62599218_62599303_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219
ONT_simulated_read_7962623	chr14	+	420	4	ISM	ENSMUSG00000032925.17	ENST00000618057.4	1853	10	1342	127155	1223	-127155	internal_fragment	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACGTGTGAGTGTGATGA	NA	NA	NA	NA	NA	NA	NA	NA	123898835	124083921	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_123898921_124077974_124078098_124081208_124081350_124083850
ONT_simulated_read_7964357	chr11	+	655	5	ISM	ENSMUSG00000035413.9	ENSMUST00000040865.9	1633	7	0	4511	0	-4511	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTCGTTGCCATGACAA	NA	NA	NA	NA	NA	NA	NA	NA	80701000	80708348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_80701286_80703331_80703516_80705044_80705177_80706491_80706526_80708328
ONT_simulated_read_7965503	chr4	-	732	1	ISM	ENSMUSG00000028906.18	ENST00000644780.1	4049	17	94916	1064	53249	-946	mono-exon	FALSE	NA	NA	NA	NA	NA	333	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTGCATACAAAAGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	131681493	131680761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_131680800_131681500
ONT_simulated_read_7967029	chr7	-	1777	10	ISM	ENSMUSG00000038187.15	ENSMUST00000047091.14	2581	11	383	661	383	-644	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGAATGGTTTTTTAATG	NA	NA	NA	NA	NA	NA	NA	NA	112968163	112915493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112950987_112951146_112964111_112964177_112968078
ONT_simulated_read_7967684	chr12	-	1285	5	ISM	ENSMUSG00000021027.18	ENST00000443361.1	6205	40	143529	29738	143529	-29738	internal_fragment	FALSE	canonical	NA	NA	NA	NA	190	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTGTAATATACCCAATGA	NA	NA	NA	NA	NA	NA	NA	NA	55724023	55689170	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_55689269_55705832_55705989_55712337_55712462_55720237_55720310_55723188
ONT_simulated_read_7968915	chr19	-	528	1	ISM	ENSMUSG00000024667.13	ENSMUST00000025569.9	1101	5	5219	31	4732	0	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTTTTAATAAAAGTAT	NA	NA	NA	NA	NA	NA	NA	NA	10528383	10527855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_10527900_10528400
ONT_simulated_read_7970251	chr19	-	1630	6	ISM	ENSMUSG00000041360.9	ENSMUST00000076219.6	3471	18	17561	614	17561	-614	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	162	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAGGTTCCAGGACTACT	NA	NA	NA	NA	NA	NA	NA	NA	27389664	27366711	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581
ONT_simulated_read_7972415	chr3	-	727	6	ISM	ENSMUSG00000040412.18	ENST00000529753.5	2888	20	72910	92	72910	-92	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGGACATGTGAGAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	108370883	108365729	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_108365785_108367000_108367167_108368254_108368434_108368511_108368639_108370205_108370308_108370785
ONT_simulated_read_7974009	chr15	+	292	1	ISM	ENSMUSG00000023046.7	ENSMUST00000023807.7	1112	4	0	4858	0	-4858	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGCAGACTGGTTGTCGC	NA	NA	NA	NA	NA	NA	NA	NA	102052796	102053088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_102052800_102053100
ONT_simulated_read_7974694	chr1	-	188	2	ISM	ENSMUSG00000062580.10	ENSMUST00000081104.10	7280	6	9238	6714	9238	-6714	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTAGGACTTGGTTCC	NA	NA	NA	NA	NA	NA	NA	NA	135232278	135229664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_135229742_135232167
ONT_simulated_read_7976660	chr10	-	574	2	ISM	ENSMUSG00000020184.16	ENST00000545204.2	816	3	13738	154	13738	-86	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACGTGTGCAAAGAAGCTA	NA	NA	NA	NA	NA	NA	NA	NA	117531947	117526206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_117526691_117531857
ONT_simulated_read_797723	chr6	-	2091	16	ISM	ENSMUSG00000029687.17	ENST00000320356.7	2658	20	38902	38	21534	-38	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTTTCAAATTTGAATA	NA	NA	NA	NA	NA	NA	NA	NA	47533060	47507252	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528650_47528830_47529319_47529423_47531057_47531199_47532963
ONT_simulated_read_797784	chr7	-	293	1	ISM	ENSMUSG00000008193.14	ENSMUST00000035323.6	2788	6	3815	1971	1674	14	mono-exon	FALSE	NA	NA	NA	NA	NA	1034	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAGCACTCCGCTAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	44177680	44177387	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44177400_44177700
ONT_simulated_read_7979152	chr9	+	1192	7	ISM	ENSMUSG00000023345.18	ENST00000394970.6	1338	10	-193	54584	0	-54584	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGGACAGTGGCATGGCA	NA	NA	NA	NA	NA	NA	NA	NA	106158259	106172474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339
ONT_simulated_read_7979638	chr2	-	1197	10	ISM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	0	5857	0	-4376	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGAGAGCACATTGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	125701059	125678080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684653_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ONT_simulated_read_7980599	chr17	-	1324	4	ISM	ENSMUSG00000024006.18	ENSMUST00000232836.2	2778	13	25972	0	25972	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCACAGCCTCCTTGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	29193693	29190691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519
ONT_simulated_read_798569	chr1	-	915	6	ISM	ENSMUSG00000052534.16	ENSMUST00000176790.8	1828	8	222155	402	127230	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCCAGCAATCGCATCCC	NA	NA	NA	NA	NA	NA	NA	NA	168037164	167986300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_167986394_168011098_168011189_168018846_168019007_168023316_168023453_168030915_168031107_168036919
ONT_simulated_read_7985940	chr3	-	625	7	NNC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	584	-1	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTGAGCAAGCTACTGGA	NA	NA	NA	NA	NA	NA	NA	NA	54641149	54636249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639651_54641078
ONT_simulated_read_7986338	chr2	-	1012	6	ISM	ENSMUSG00000005882.19	ENSMUST00000109631.8	1091	8	20885	-312	20611	293	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTTTTCTTTGTTCCA	NA	NA	NA	NA	NA	NA	NA	NA	155751345	155689866	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272
ONT_simulated_read_7990417	chr2	-	1908	3	ISM	ENSMUSG00000027293.14	ENSMUST00000028755.8	3730	6	52203	1151	52203	-1151	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	345	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTGGAAGAGACCAGCG	NA	NA	NA	NA	NA	NA	NA	NA	119932884	119920806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_119922166_119927443_119927609_119932500
ONT_simulated_read_7993345	chr13	-	927	1	ISM	ENSMUSG00000078994.10	ENSMUST00000109732.3	2056	4	9261	276	9237	-271	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATGTTGTCATGGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	67538625	67537698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_67537700_67538600
ONT_simulated_read_7993970	chr17	-	1636	1	ISM	ENSMUSG00000047123.9	ENSMUST00000058136.9	2992	2	4594	1238	4594	-1238	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGCTGGATGAACACTCC	NA	NA	NA	NA	NA	NA	NA	NA	56579192	56577556	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56577600_56579200
ONT_simulated_read_799509	chr7	+	715	5	ISM	ENSMUSG00000030555.17	ENST00000394129.6	1625	10	22774	0	14605	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGCACAGCTCACACACA	NA	NA	NA	NA	NA	NA	NA	NA	67319799	67361278	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101
ONT_simulated_read_799590	chr8	-	708	1	ISM	ENSMUSG00000031916.18	ENSMUST00000095517.12	4476	5	3649	6044	3644	-6038	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCGCCTCTTGCCTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	107779672	107778964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_107779000_107779700
ONT_simulated_read_7996292	chr5	-	892	1	ISM	ENSMUSG00000035273.15	ENSMUST00000045617.15	3117	12	38686	655	38556	-655	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCCTGTGAGTAGCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	100828896	100828004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_100828000_100828900
ONT_simulated_read_7996740	chr4	-	580	1	NIC	ENSMUSG00000073771.12	novel	1620	8	NA	NA	4756	-108	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTCCCTTCTAGGGTCT	NA	NA	NA	NA	NA	NA	NA	NA	116978059	116977479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_116977500_116978100
ONT_simulated_read_8001134	chr12	-	714	1	FSM	ENSMUSG00000043483.5	ENSMUST00000052882.5	636	1	0	-78	0	78	mono-exon	FALSE	NA	NA	NA	NA	NA	1052	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTACTGTTTCTATCA	NA	NA	NA	NA	NA	NA	NA	NA	96889832	96889118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_96889100_96889800
ONT_simulated_read_8001325	chr19	-	1229	10	ISM	ENSMUSG00000118668.1	ENSMUST00000239527.1	3140	17	262	2760	262	-2760	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGATCCTCAGCCGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	6817742	6809337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6809453_6809623_6809753_6812468_6812634_6814694_6814846_6814947_6815052_6815123_6815205_6815422_6815531_6816619_6816736_6816827_6817047_6817701
ONT_simulated_read_8002574	chr9	-	2920	12	ISM	ENSMUSG00000032020.16	ENSMUST00000151485.8	2231	14	28907	-1034	28907	1034	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTAGAGAGAGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	40961895	40924982	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_40926333_40927893_40928004_40929312_40929420_40934716_40934862_40937545_40937639_40939312_40939436_40940934_40941056_40942776_40942910_40948732_40948942_40954770_40954941_40958176_40958376_40961735
ONT_simulated_read_8002760	chr2	-	1759	7	ISM	ENSMUSG00000026872.19	ENSMUST00000076836.13	3913	10	2761	8749	159	-8749	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAGCATATCCACTCCAT	NA	NA	NA	NA	NA	NA	NA	NA	45000141	44887202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_44888008_44888895_44889005_44891611_44891827_44892527_44892717_44907408_44907478_44912858_44913117_45000027
ONT_simulated_read_800482	chr10	-	318	3	ISM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	7055	8238	7055	-8238	internal_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCGTGGGTTGAAAAAATG	NA	NA	NA	NA	NA	NA	NA	NA	57401571	57400107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_57400195_57400415_57400496_57401420
ONT_simulated_read_8007705	chr13	-	1651	6	ISM	ENSMUSG00000021546.19	ENSMUST00000225674.2	2704	16	7776	-4	3690	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	557	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACGTGTGCCCAATTTGA	NA	NA	NA	NA	NA	NA	NA	NA	58542179	58539048	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123
ONT_simulated_read_8008376	chr16	-	1578	5	ISM	ENSMUSG00000022661.15	ENSMUST00000023341.15	2085	6	8563	496	8563	-496	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAGTAGTTCACATCTTT	NA	NA	NA	NA	NA	NA	NA	NA	45220675	45203041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_45203821_45212643_45212752_45214955_45215229_45217331_45217659_45220584
ONT_simulated_read_8010481	chrX	-	1381	12	ISM	ENSMUSG00000031099.17	ENST00000371122.8	4119	25	17250	32243	17154	-31982	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAATTTTTTCCACCGCG	NA	NA	NA	NA	NA	NA	NA	NA	46964155	46930491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_46930528_46930785_46930897_46938792_46938913_46940521_46940671_46941471_46941605_46943442_46943596_46944454_46944491_46947132_46947255_46949297_46949525_46950155_46950266_46963031_46963101_46964040
ONT_simulated_read_8010662	chr10	-	598	2	ISM	ENSMUSG00000052151.13	ENSMUST00000218241.2	825	5	6130	-198	6130	198	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGACTGTTCATGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	79363461	79362662	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_79363083_79363283
ONT_simulated_read_8010768	chr9	-	3498	8	ISM	ENSMUSG00000032513.9	ENSMUST00000035099.9	3906	9	4222	301	4222	-301	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAAGCTGTGGCTTCGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	119762409	119754623	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_119757103_119757292_119757446_119757878_119758030_119758616_119758828_119759038_119759170_119759285_119759373_119761686_119761891_119762327
ONT_simulated_read_8012749	chr19	-	2630	15	ISM	ENSMUSG00000025199.17	ENSMUST00000026217.11	3502	21	10152	221	10149	-220	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCTTGAAGGTTGATGTA	NA	NA	NA	NA	NA	NA	NA	NA	44085767	44061994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_44062980_44063869_44063970_44065684_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641
ONT_simulated_read_801411	chr7	+	616	4	ISM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	0	1917	0	-1917	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	403	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCCTAGGTTCACCGAG	NA	NA	NA	NA	NA	NA	NA	NA	142606475	142619754	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679
ONT_simulated_read_8014207	chr2	-	678	1	ISM	ENSMUSG00000009030.15	ENSMUST00000009174.15	2858	4	6973	1608	6894	-1094	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGAATGCTGACTCACTT	NA	NA	NA	NA	NA	NA	NA	NA	37242371	37241693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_37241700_37242400
ONT_simulated_read_8014240	chr8	-	2037	7	FSM	ENSMUSG00000040631.9	ENST00000566936.5	2624	7	120	467	120	365	multi-exon	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCCCACACGGTGCTGAG	NA	NA	NA	NA	NA	NA	NA	NA	95597684	95590922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_95592091_95592248_95592388_95593084_95593275_95593375_95593496_95593755_95593871_95594019_95594128_95597487
ONT_simulated_read_8016965	chr11	+	828	5	ISM	ENSMUSG00000007850.17	ENSMUST00000077817.8	2126	13	5410	303	4872	-299	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGCTTTTTTGTAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	50274005	50277052	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50276603
ONT_simulated_read_8017953	chr6	-	1940	2	ISM	ENSMUSG00000051343.12	ENSMUST00000060837.10	4035	5	36944	465	36944	-460	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCAGCATAGAGCAGATG	NA	NA	NA	NA	NA	NA	NA	NA	85314602	85312408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_85314209_85314462
ONT_simulated_read_8020292	chr12	-	3138	3	ISM	ENSMUSG00000079036.11	ENSMUST00000162961.8	3857	6	9643	236	9643	-236	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCATTTTGTACAGATTG	NA	NA	NA	NA	NA	NA	NA	NA	87480966	87473174	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_87476041_87478169_87478364_87480888
ONT_simulated_read_8020324	chr6	+	828	1	ISM	ENSMUSG00000033542.14	ENSMUST00000031750.14	5469	15	8929	13982	8929	-13982	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTCTGGGCCAGGTACCC	NA	NA	NA	NA	NA	NA	NA	NA	43251444	43252272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_43251400_43252300
ONT_simulated_read_8021034	chr17	-	328	1	ISM	ENSMUSG00000033475.16	ENSMUST00000113302.10	749	3	1210	0	1095	0	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTCAAGAGACAGGCATG	NA	NA	NA	NA	NA	NA	NA	NA	47997898	47997570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_47997600_47997900
ONT_simulated_read_802372	chr15	-	1551	10	FSM	ENSMUSG00000002524.18	ENST00000527197.5	1559	10	8	0	8	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGCCTCATTTCCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	75952731	75942176	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75952698
ONT_simulated_read_8025922	chr15	-	483	5	ISM	ENSMUSG00000002524.18	ENSMUST00000100527.13	1881	12	5284	1683	5261	-1537	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTACATCAAGACCTGT	NA	NA	NA	NA	NA	NA	NA	NA	75947478	75943713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390
ONT_simulated_read_8026263	chr18	-	497	1	ISM	ENSMUSG00000024579.8	ENSMUST00000025472.7	2017	6	9674	628	9674	-628	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTCAATGCCTTGGAGTG	NA	NA	NA	NA	NA	NA	NA	NA	61831032	61830535	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_61830500_61831000
ONT_simulated_read_8028527	chr7	+	1804	7	ISM	ENSMUSG00000030409.17	ENSMUST00000108473.10	2588	13	3608	0	3534	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGCGCAATATCTCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	18821417	18827746	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_18821626_18821925_18822190_18822835_18822922_18824853_18824966_18825605_18825770_18825863_18825962_18826874
ONT_simulated_read_803425	chr12	-	3034	8	ISM	ENSMUSG00000021224.16	ENSMUST00000117217.8	3549	11	79591	153	0	-116	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTGGCCTTACAATCAAAT	NA	NA	NA	NA	NA	NA	NA	NA	83889117	83840960	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_83842929_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83878695_83878771_83888991
ONT_simulated_read_8034806	chr7	+	738	4	ISM	ENSMUSG00000038244.15	ENST00000527546.5	3187	20	75451	62	-21579	-62	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGGGAGGGTTCACCA	NA	NA	NA	NA	NA	NA	NA	NA	111945935	111953471	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_111946116_111948600_111948690_111950531_111950635_111953105
ONT_simulated_read_8035345	chr1	-	719	6	ISM	ENSMUSG00000038733.15	ENST00000678555.1	2931	13	24234	571	24231	-571	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATGATTGATAGCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	181015312	181005294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_181005397_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170
ONT_simulated_read_8036063	chrX	-	1050	1	ISM	ENSMUSG00000035725.14	ENSMUST00000036333.14	4146	9	32431	1387	32125	-1387	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAATATTGCCTTAATTC	NA	NA	NA	NA	NA	NA	NA	NA	76807453	76806403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_76806400_76807500
ONT_simulated_read_803914	chr1	+	1617	5	ISM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	0	1146	0	-1146	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	127	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGGCGAGCTGAGCACTG	NA	NA	NA	NA	NA	NA	NA	NA	172139933	172146262	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120
ONT_simulated_read_804250	chr11	-	555	5	ISM	ENSMUSG00000039703.16	ENST00000374747.9	1809	16	33277	0	33277	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTCGATTCCCTTCCACC	NA	NA	NA	NA	NA	NA	NA	NA	120295192	120274116	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120274226_120275368_120275486_120276595_120276692_120280193_120280266_120295031
ONT_simulated_read_8044418	chr6	-	1281	10	ISM	ENSMUSG00000012535.15	ENST00000482320.5	3537	24	20528	27381	20369	-25690	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCTCCCAGAGACCGTGC	NA	NA	NA	NA	NA	NA	NA	NA	29589229	29568950	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027
ONT_simulated_read_8047542	chr14	-	197	1	ISM	ENSMUSG00000010376.16	ENSMUST00000010520.10	824	4	9525	140	9274	-138	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAGAATGTGAGGACCCC	NA	NA	NA	NA	NA	NA	NA	NA	55900056	55899859	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55899900_55900100
ONT_simulated_read_804897	chr17	-	4398	9	ISM	ENSMUSG00000024077.16	ENSMUST00000024881.14	2967	16	21563	-2351	21563	-2332	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGTGTGTGTGTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	78974683	78959673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_78963089_78963177_78963265_78964336_78964445_78965312_78965454_78967472_78967641_78969190_78969313_78970489_78970538_78972047_78972224_78974550
ONT_simulated_read_8050779	chr17	+	509	1	ISM	ENSMUSG00000038141.12	ENSMUST00000232383.2	4499	17	49697	1249	36087	-1249	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCCATGGTTTATAACAC	NA	NA	NA	NA	NA	NA	NA	NA	6356831	6357340	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_6356800_6357300
ONT_simulated_read_8051271	chr9	-	256	2	ISM	ENSMUSG00000032786.17	ENSMUST00000074082.13	2129	11	4488	7810	4362	-7810	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGAGGATCCAAGCCGAC	NA	NA	NA	NA	NA	NA	NA	NA	106120567	106118935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_106118985_106120360
ONT_simulated_read_8051816	chr7	+	714	8	FSM	ENSMUSG00000053046.17	ENST00000544817.5	1625	8	27	884	27	259	multi-exon	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATGTCACCTCCACGAG	NA	NA	NA	NA	NA	NA	NA	NA	141546946	141556228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_141547057_141547451_141547501_141550625_141550750_141552114_141552296_141552369_141552460_141552656_141552752_141554578_141554627_141556211
ONT_simulated_read_8052196	chr17	+	2342	11	ISM	ENSMUSG00000002835.10	ENSMUST00000002914.10	5535	14	6375	5019	6375	-5019	internal_fragment	TRUE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCCAGTGGACCTACAT	NA	NA	NA	NA	NA	NA	NA	NA	56353813	56372257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_56354635_56363420_56363478_56364717_56364921_56365983_56366066_56366257_56366327_56369084_56369312_56369550_56369720_56369810_56369892_56370327_56370421_56371000_56371257_56371973
ONT_simulated_read_8052302	chr9	-	1093	5	ISM	ENSMUSG00000032366.16	ENSMUST00000113695.8	1607	8	10977	-2	10884	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	66940107	66929871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075
ONT_simulated_read_8052547	chr10	-	1519	10	ISM	ENSMUSG00000096054.4	ENST00000413186.6	4504	30	96006	9719	96006	9628	internal_fragment	TRUE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCCCGTCCAGGACCCAG	NA	NA	NA	NA	NA	NA	NA	NA	5310864	5298675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_5298750_5298928_5299088_5299256_5299392_5300864_5301030_5302051_5302211_5303814_5303989_5306676_5306821_5308333_5308487_5308940_5309106_5310673
ONT_simulated_read_8057009	chr16	-	1522	1	ISM	ENSMUSG00000022887.10	ENSMUST00000229619.2	3786	11	49922	844	49920	682	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCCTGAAACACTGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	23289478	23287956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_23288000_23289500
ONT_simulated_read_805739	chr7	-	261	3	ISM	ENSMUSG00000053565.11	ENST00000592558.1	652	7	7103	-3	7103	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	876	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTGTCTCTTGCCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	28674095	28670796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28670864_28671956_28672083_28674027
ONT_simulated_read_8058035	chr17	+	759	6	ISM	ENSMUSG00000024247.15	ENST00000294964.6	2398	8	4823	793	4810	-793	internal_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCCTGGTTGACTGGTTG	NA	NA	NA	NA	NA	NA	NA	NA	83527530	83531693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_83527586_83528394_83528667_83529218_83529299_83529554_83529660_83531211_83531386_83531620
ONT_simulated_read_8062211	chr2	-	336	1	FSM	ENSMUSG00000083688.2	ENSMUST00000121486.2	724	1	0	388	0	-388	mono-exon	FALSE	NA	NA	NA	NA	NA	220	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATAGTTGATCAGATAGG	NA	NA	NA	NA	NA	NA	NA	NA	87394064	87393728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_87393700_87394100
ONT_simulated_read_8065314	chr18	-	252	1	ISM	ENSMUSG00000024502.11	ENST00000507386.5	4553	20	58883	1710	58883	-47	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAGCCGTGGAACCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	43665009	43664757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_43664800_43665000
ONT_simulated_read_8072496	chr8	+	544	5	ISM	ENSMUSG00000031543.19	ENSMUST00000173248.8	7100	45	37576	50039	37576	-48658	internal_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTTCTTCTTCCCCGA	NA	NA	NA	NA	NA	NA	NA	NA	23586116	23589665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_23586213_23586763_23586863_23587861_23588060_23588936_23589036_23589613
ONT_simulated_read_8072730	chr6	-	1075	7	ISM	ENSMUSG00000041540.17	ENST00000537393.5	2687	15	301921	614	39613	-328	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTACGGCGCCAAGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	143853219	143779149	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_143779294_143780921_143781139_143786899_143787074_143790461_143790571_143807109_143807256_143819698_143819877_143853112
ONT_simulated_read_8076074	chr15	-	700	1	FSM	ENSMUSG00000049414.8	ENSMUST00000079706.7	438	1	0	-262	0	262	mono-exon	FALSE	NA	NA	NA	NA	NA	349	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACCGAGCCAATCAAAGAC	NA	NA	NA	NA	NA	NA	NA	NA	83290264	83289564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_-_83289600_83290300
ONT_simulated_read_8076964	chr7	-	1226	5	ISM	ENSMUSG00000030452.17	ENST00000674289.1	1655	6	13853	335	-1683	156	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	362	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATGTATCTGAAAAAATTA	NA	NA	NA	NA	NA	NA	NA	NA	55594457	55582607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228
ONT_simulated_read_8076999	chr3	-	390	5	ISM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	10584	9997	10467	6576	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCGAAATGGTTACCATG	NA	NA	NA	NA	NA	NA	NA	NA	138184692	138174713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630
ONT_simulated_read_8080032	chr2	+	621	1	FSM	ENSMUSG00000082399.2	ENSMUST00000118248.2	480	1	0	-141	0	141	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAAAGTCTATGAATAATG	NA	NA	NA	NA	NA	NA	NA	NA	134645868	134646489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_134645900_134646500
ONT_simulated_read_8089912	chr11	-	314	2	ISM	ENSMUSG00000032892.15	ENSMUST00000038644.5	820	5	831	14	831	-14	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAAGAACATAATTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	68863838	68863323	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_68863568_68863768
ONT_simulated_read_8090227	chr7	-	2143	8	ISM	ENSMUSG00000030850.18	ENSMUST00000094017.5	1938	12	11117	-935	10209	125	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTGCTTGATCTGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	130110982	129995352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130106423_130106553_130109211_130109430_130110736
ONT_simulated_read_8090722	chr2	+	605	5	ISM	ENSMUSG00000014873.16	ENSMUST00000015017.8	1203	6	14	952	14	-952	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATGACACTCCTGAAGACT	NA	NA	NA	NA	NA	NA	NA	NA	26806392	26809243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203
ONT_simulated_read_8093266	chr4	-	630	2	ISM	ENSMUSG00000032870.9	ENSMUST00000043200.8	2905	10	45057	1019	45057	-1019	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCCTGACTGTCCAGATT	NA	NA	NA	NA	NA	NA	NA	NA	120829387	120826532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_120826862_120829086
ONT_simulated_read_8093329	chr12	-	148	1	FSM	ENSMUSG00000080356.3	ENSMUST00000116706.3	82	1	0	-66	0	66	mono-exon	FALSE	NA	NA	NA	NA	NA	317	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCGTACTTTCAACAGGGAA	NA	NA	NA	NA	NA	NA	NA	NA	110244563	110244415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_110244400_110244600
ONT_simulated_read_8093737	chr18	+	911	6	ISM	ENSMUSG00000000420.16	ENSMUST00000178605.2	3796	12	0	19223	0	-19223	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCTCTGACATGACCTATG	NA	NA	NA	NA	NA	NA	NA	NA	24365653	24400644	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_24365711_24371298_24371543_24379106_24379282_24387574_24387742_24397381_24397590_24400584
ONT_simulated_read_8094917	chr8	+	1747	11	ISM	ENSMUSG00000017478.16	ENSMUST00000093073.12	3705	18	26627	473	26589	-472	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCCAGAATAGAGTCTCCA	NA	NA	NA	NA	NA	NA	NA	NA	123130008	123143626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_123130159_123134070_123134263_123134981_123135108_123137619_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214
ONT_simulated_read_8096408	chr12	-	1685	1	NIC	ENSMUSG00000112547.2	novel	2086	2	NA	NA	46759	-288	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGACCGTTAAAGATTTA	NA	NA	NA	NA	NA	NA	NA	NA	44269142	44267457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_44267500_44269100
ONT_simulated_read_8097643	chr5	-	230	1	ISM	ENSMUSG00000029624.11	ENSMUST00000031628.10	3087	9	1587	17778	1587	-17778	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCACTGTGGCTCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	145102331	145102101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_145102100_145102300
ONT_simulated_read_809771	chr1	+	383	1	FSM	ENSMUSG00000102740.2	ENSMUST00000193067.2	489	1	0	106	0	-106	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTTAAAAATACAGTGAATC	NA	NA	NA	NA	NA	NA	NA	NA	141284526	141284909	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_141284500_141284900
ONT_simulated_read_8099117	chr4	-	667	7	FSM	ENSMUSG00000050323.15	ENST00000396111.6	684	7	17	0	17	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGCTTCAGTGGAGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	11073228	11053429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199_11070323_11073139
ONT_simulated_read_8101622	chr10	-	1348	1	ISM	ENSMUSG00000020092.10	ENSMUST00000020289.10	4282	20	62295	232	62295	-232	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGAGACCCTTCACACTC	NA	NA	NA	NA	NA	NA	NA	NA	61157014	61155666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_61155700_61157000
ONT_simulated_read_8102418	chrX	-	728	1	ISM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	21799	1476	21741	-1476	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGGCAGACCTGCACAGC	NA	NA	NA	NA	NA	NA	NA	NA	93234516	93233788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_93233800_93234500
ONT_simulated_read_8103260	chr13	-	1278	13	ISM	ENSMUSG00000021693.21	ENST00000674916.1	3763	18	34979	1758	9387	-54	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAGCAAATTAACCCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	107123877	107098684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_107098733_107100848_107100985_107101525_107101628_107105145_107105297_107111002_107111071_107111878_107111990_107114531_107114624_107115479_107115544_107115984_107116076_107119031_107119195_107119699_107119755_107121571_107121668_107123776
ONT_simulated_read_8104869	chr2	-	426	3	ISM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	8947	1922	8947	-1922	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGCTCTTGGCCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	26814993	26811973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_26812184_26814356_26814544_26814964
ONT_simulated_read_810514	chr19	-	2061	16	ISM	ENSMUSG00000039148.6	ENSMUST00000044207.5	5091	20	3992	2388	3992	-2388	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTCTTTCGTTCACTCTC	NA	NA	NA	NA	NA	NA	NA	NA	5434739	5429938	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5430164_5430247_5430370_5430465_5430556_5431008_5431145_5431237_5431329_5431693_5431782_5431988_5432100_5432213_5432388_5432742_5432886_5432967_5433102_5433182_5433308_5433647_5433855_5433962_5434106_5434191_5434292_5434397_5434476_5434645
ONT_simulated_read_8107836	chrX	-	708	6	ISM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	9796	2191	9738	-2191	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGAGTGACCATTAAGCC	NA	NA	NA	NA	NA	NA	NA	NA	93246519	93234503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419
ONT_simulated_read_8109008	chr17	-	426	1	ISM	ENSMUSG00000024045.7	ENSMUST00000002699.7	3731	14	15481	1607	15481	-1607	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGATATTCCCACCGAAT	NA	NA	NA	NA	NA	NA	NA	NA	32524678	32524252	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32524300_32524700
ONT_simulated_read_810961	chr2	+	1333	11	ISM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	4524	11496	4437	-11496	internal_fragment	TRUE	canonical	NA	NA	NA	NA	313	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTGCTGAGCCAGATAAC	NA	NA	NA	NA	NA	NA	NA	NA	157125502	157156743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697
ONT_simulated_read_8109942	chr4	-	1088	1	ISM	ENSMUSG00000066042.5	ENSMUST00000102567.4	1675	3	3810	293	3810	-293	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTGGCTGCCCTGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	132187422	132186334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_132186300_132187400
ONT_simulated_read_8110374	chr11	+	247	2	ISM	ENSMUSG00000020828.14	ENSMUST00000108557.10	3655	25	15295	2049	15282	-2049	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGAGGCGGGGAGTATAG	NA	NA	NA	NA	NA	NA	NA	NA	70446463	70446887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_70446557_70446733
ONT_simulated_read_8114484	chr2	-	606	7	ISM	ENSMUSG00000026792.17	ENST00000675213.1	2142	23	23116	1279	23116	-1279	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGACCGTCCGCCCCCCCAG	NA	NA	NA	NA	NA	NA	NA	NA	32826487	32818066	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_32818143_32818663_32818746_32819585_32819718_32822102_32822202_32823826_32823923_32825179_32825261_32826447
ONT_simulated_read_8114752	chr16	-	142	1	ISM	ENSMUSG00000022940.18	ENSMUST00000113910.8	966	5	54	6052	54	-5864	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCAGGACTCAAGGTCCCG	NA	NA	NA	NA	NA	NA	NA	NA	94171499	94171357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_94171400_94171500
ONT_simulated_read_8115710	chr5	+	1348	9	ISM	ENSMUSG00000037313.17	ENSMUST00000114426.10	2187	15	48	4018	48	-4018	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGAGCCTATTGTGGATG	NA	NA	NA	NA	NA	NA	NA	NA	33815977	33825524	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477
ONT_simulated_read_8116791	chr19	-	595	1	NIC	ENSMUSG00000024885.10	novel	1924	10	NA	NA	15723	0	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACAGGTGTCTTGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	3964085	3963490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_3963500_3964100
ONT_simulated_read_8116896	chr9	+	502	3	ISM	ENSMUSG00000032356.13	ENST00000558480.7	3907	27	184	76680	3	28908	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTATGCAGAAGTACTTAC	NA	NA	NA	NA	NA	NA	NA	NA	89791964	89826808	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_89792327_89806113_89806224_89826778
ONT_simulated_read_811723	chr3	+	1074	4	ISM	ENSMUSG00000037072.17	ENSMUST00000082437.11	1514	5	7226	0	64	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGCTTTGTCCTTTCGTG	NA	NA	NA	NA	NA	NA	NA	NA	144283412	144303441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_144283515_144296372_144296437_144300661_144300712_144302583
ONT_simulated_read_8117566	chr13	+	507	3	FSM	ENSMUSG00000021501.5	ENST00000514518.1	759	3	50	202	50	-202	multi-exon	FALSE	canonical	NA	NA	NA	NA	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAGCACTAACGATTTCT	NA	NA	NA	NA	NA	NA	NA	NA	55771010	55780003	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_55771070_55776389_55776456_55779621
ONT_simulated_read_8119181	chr9	-	778	1	ISM	ENSMUSG00000032096.17	ENSMUST00000034607.10	4072	10	23850	1654	23837	445	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTTCAAGATGCCGAAT	NA	NA	NA	NA	NA	NA	NA	NA	44655292	44654514	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44654500_44655300
ONT_simulated_read_8119183	chr3	-	1093	1	ISM	ENSMUSG00000028273.16	ENSMUST00000170361.9	2010	9	88443	235	88401	0	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTATACTTGTTTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	142009168	142008075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_142008100_142009200
ONT_simulated_read_8121012	chr6	+	979	9	NNC	ENSMUSG00000052337.16	novel	2518	13	NA	NA	14	-11747	at_least_one_novel_splicesite	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTTGTGGTCCAAGCA	NA	NA	NA	NA	NA	NA	NA	NA	71808415	71840167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829749_71829852_71833895_71834033_71837986_71838091_71839328_71839465_71840124
ONT_simulated_read_812306	chr7	-	561	7	ISM	ENSMUSG00000059981.13	ENST00000543033.5	4076	17	4230	6178	4141	-6178	internal_fragment	TRUE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGAAAATCCCTCAAGACA	NA	NA	NA	NA	NA	NA	NA	NA	126479305	126475070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126475107_126475197_126475292_126477894_126477987_126478091_126478206_126478362_126478460_126478578_126478625_126479223
ONT_simulated_read_8124721	chr8	+	1147	1	FSM	ENSMUSG00000071076.9	ENSMUST00000095267.8	1667	1	0	520	0	-520	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCATGCGCGGACTAGCTG	NA	NA	NA	NA	NA	NA	NA	NA	71151598	71152745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71151600_71152700
ONT_simulated_read_8124983	chr6	-	645	1	ISM	ENSMUSG00000025701.13	ENSMUST00000026795.13	2821	14	50309	148	50155	-148	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCACTGTTCTCTTTCGA	NA	NA	NA	NA	NA	NA	NA	NA	116387830	116387185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_116387200_116387800
ONT_simulated_read_8127123	chr5	+	1177	11	ISM	ENSMUSG00000029146.15	ENSMUST00000031029.15	2018	15	67	1190	67	-1190	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGGCTACAGTGGGTCAC	NA	NA	NA	NA	NA	NA	NA	NA	31350637	31355054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964
ONT_simulated_read_8127426	chr13	-	405	1	FSM	ENSMUSG00000078915.3	ENSMUST00000109187.3	630	1	395	-170	395	170	mono-exon	FALSE	NA	NA	NA	NA	NA	565	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCTCTATCAGTTGACCTT	NA	NA	NA	NA	NA	NA	NA	NA	45232208	45231803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_45231800_45232200
ONT_simulated_read_8130766	chr4	-	296	3	ISM	ENSMUSG00000035495.16	ENSMUST00000107770.2	2700	10	14289	4198	14289	-4198	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTGACATTTTCAGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	46124149	46119929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_46120000_46120447_46120567_46124042
ONT_simulated_read_8131770	chr8	-	1567	7	ISM	ENSMUSG00000063605.6	ENSMUST00000077955.6	2304	9	4315	2460	4315	-2460	internal_fragment	FALSE	canonical	NA	NA	NA	NA	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACGGTCCCTGGACGAGC	NA	NA	NA	NA	NA	NA	NA	NA	95640411	95631956	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_95631989_95632559_95632731_95634342_95634553_95634901_95635019_95636371_95636481_95638055_95638283_95639710
ONT_simulated_read_8132203	chr7	-	1097	9	ISM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	59536	23951	59536	-23951	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCGGGAGGAGTACCTGC	NA	NA	NA	NA	NA	NA	NA	NA	80393628	80385281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80385386_80386009_80386166_80387861_80388071_80388420_80388491_80388580_80388653_80388742_80388827_80389537_80389709_80392783_80392927_80393540
ONT_simulated_read_8132677	chr2	-	654	4	ISM	ENSMUSG00000002108.11	ENST00000441012.7	1829	10	4537	87	4537	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGCAGGGTTCTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	91020583	91014436	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_91014828_91014999_91015095_91015286_91015401_91020529
ONT_simulated_read_8133625	chr1	-	2396	1	NIC	ENSMUSG00000033845.14	novel	1894	5	NA	NA	8927	-1177	mono-exon	FALSE	NA	NA	NA	NA	NA	373	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCATGTGTGCCTGCATCT	NA	NA	NA	NA	NA	NA	NA	NA	4847006	4844610	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_4844600_4847000
ONT_simulated_read_813436	chr4	-	968	2	ISM	ENSMUSG00000028530.15	ENSMUST00000102781.10	4906	25	110634	367	110634	-367	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAAAGGAAGACAGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	101011845	101009930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_101010788_101011734
ONT_simulated_read_8135490	chr11	+	1506	2	ISM	ENSMUSG00000041623.18	ENSMUST00000106621.4	2062	5	0	5633	0	-5633	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTATCCCGTTCCTAAA	NA	NA	NA	NA	NA	NA	NA	NA	113575272	113579840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_113575538_113578599
ONT_simulated_read_8135537	chr17	+	433	4	ISM	ENSMUSG00000024312.11	ENSMUST00000025170.11	2229	15	57	8237	57	-8237	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAGAGGCAAGCGTCAGA	NA	NA	NA	NA	NA	NA	NA	NA	34159690	34160434	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34159781_34159858_34160066_34160165_34160247_34160379
ONT_simulated_read_8139927	chr16	-	1964	1	ISM	ENSMUSG00000038037.6	ENSMUST00000229866.2	2908	2	663	670	663	-667	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTGTCTGGGCTTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	10602737	10600773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_10600800_10602700
ONT_simulated_read_8141449	chr16	-	1030	11	ISM	ENSMUSG00000058240.15	ENSMUST00000073466.13	1965	13	14162	432	2656	-148	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTGTTGAGAAAAACCAAG	NA	NA	NA	NA	NA	NA	NA	NA	91511701	91486641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636
ONT_simulated_read_8141961	chr12	-	288	3	ISM	ENSMUSG00000020673.15	ENST00000382198.5	1501	8	2611	11542	2611	-11542	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAAGTTTCCAATGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	30166945	30154085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_30154110_30155905_30156036_30166811
ONT_simulated_read_8144451	chr5	-	458	2	ISM	ENSMUSG00000029413.15	ENSMUST00000159345.8	1629	11	18556	109	18556	-109	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAGATAGATAGATAGATA	NA	NA	NA	NA	NA	NA	NA	NA	92407468	92406400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_92406803_92407412
ONT_simulated_read_814800	chr5	+	260	3	ISM	ENSMUSG00000039934.13	ENST00000441833.6	670	7	11745	36	11745	-36	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	279	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGAAACACACCACCATGC	NA	NA	NA	NA	NA	NA	NA	NA	21494786	21495593	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_21494889_21495042_21495143_21495535
ONT_simulated_read_8148742	chr11	-	874	8	ISM	ENSMUSG00000018160.16	ENSMUST00000018304.7	5845	17	23502	4199	23502	-4199	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGGCTATTCGGAGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	98060279	98049272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188
ONT_simulated_read_8150081	chr3	+	672	5	ISM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	0	5211	0	-3764	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAGAAGATCTCTGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	19242273	19269770	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634
ONT_simulated_read_8156677	chr13	-	955	1	ISM	ENSMUSG00000021482.11	ENSMUST00000222570.2	3011	6	20501	1458	20501	-1437	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAGCAGTTCAGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	64440023	64439068	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_64439100_64440000
ONT_simulated_read_8156866	chr19	+	500	1	FSM	ENSMUSG00000075227.7	ENSMUST00000162726.5	1281	1	0	781	0	-781	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGCCCCTGCGAGGACCGC	NA	NA	NA	NA	NA	NA	NA	NA	6111221	6111721	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_+_6111200_6111700
ONT_simulated_read_8157328	chr7	-	518	4	ISM	ENSMUSG00000030614.9	ENSMUST00000032843.9	2259	5	3300	1616	3300	-1616	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGGAGCTTTTACTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	90121909	90118261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_90118370_90118777_90118890_90119972_90120167_90121805
ONT_simulated_read_8158104	chr11	-	688	5	ISM	ENSMUSG00000020457.14	ENSMUST00000020741.12	1546	9	9693	351	9693	-351	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	214	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATCTGCTGGCTGGCCA	NA	NA	NA	NA	NA	NA	NA	NA	3206700	3200257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_3200366_3202159_3202283_3202643_3202812_3204511_3204643_3206542
ONT_simulated_read_8158663	chr1	-	1294	1	ISM	ENSMUSG00000016528.11	ENSMUST00000016672.11	2854	10	42616	217	42616	-217	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCATGGTCCCCCATGC	NA	NA	NA	NA	NA	NA	NA	NA	130982947	130981653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_130981700_130982900
ONT_simulated_read_815900	chr7	+	1391	5	ISM	ENSMUSG00000038618.13	ENSMUST00000046890.12	1525	6	840	74	806	-71	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTATGTACCTCACTGT	NA	NA	NA	NA	NA	NA	NA	NA	140796612	140798497	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_140796765_140796912_140797626_140797798_140797931_140798002_140798082_140798182
ONT_simulated_read_8159045	chr11	-	1636	1	ISM	ENSMUSG00000020687.14	ENST00000066544.8	5492	20	44859	1491	44740	920	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGACTAAATCTATGTATG	NA	NA	NA	NA	NA	NA	NA	NA	104396478	104394842	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_104394800_104396500
ONT_simulated_read_8159403	chr11	-	819	1	ISM	ENSMUSG00000020773.12	ENSMUST00000106441.8	2192	6	3613	54	3613	-54	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTAGAACTACCTGGCAC	NA	NA	NA	NA	NA	NA	NA	NA	115997450	115996631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115996600_115997400
ONT_simulated_read_8159964	chr15	-	1015	1	ISM	ENSMUSG00000022280.10	ENSMUST00000022890.10	4277	10	41087	1113	41038	-695	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGTTCTACGGCATTCT	NA	NA	NA	NA	NA	NA	NA	NA	36242206	36241191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_36241200_36242200
ONT_simulated_read_8165284	chr4	+	1248	9	ISM	ENSMUSG00000028869.14	ENSMUST00000030684.8	2366	16	10966	2736	10966	-2736	internal_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCAGACTTGGAAGATCT	NA	NA	NA	NA	NA	NA	NA	NA	124934750	124946433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196
ONT_simulated_read_8165510	chr10	-	1672	1	ISM	ENSMUSG00000020190.14	ENSMUST00000200082.5	3439	14	9009	286	4692	-281	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACCCCCACTCACCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	80503118	80501446	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_80501400_80503100
ONT_simulated_read_8166275	chr7	-	315	1	NIC	ENSMUSG00000050382.15	novel	4577	19	NA	NA	15242	-74	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCCCGAAGAACCAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	79348664	79348349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_79348300_79348700
ONT_simulated_read_8168513	chrX	+	129	1	ISM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	64	21642	64	-21642	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGATAAGGTGTCCAAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	99537960	99538089	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_99538000_99538100
ONT_simulated_read_8168951	chr2	-	549	1	ISM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	27976	478	27976	-478	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACGTTTGGGCTAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	129111156	129110607	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_129110600_129111200
ONT_simulated_read_8169788	chr17	-	1087	6	ISM	ENSMUSG00000023927.16	ENSMUST00000176669.8	4407	10	6479	28540	6479	-28516	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTAATGCCTCCATTT	NA	NA	NA	NA	NA	NA	NA	NA	52111468	52075019	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_52075076_52082233_52082447_52089639_52090095_52092556_52092669_52110458_52110583_52111341
ONT_simulated_read_8174436	chr1	+	1766	10	ISM	ENSMUSG00000041642.19	ENST00000360529.9	5300	33	18353	-1	18353	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCAATCCCAGTGGGGCC	NA	NA	NA	NA	NA	NA	NA	NA	136090686	136102332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_136090731_136090810_136090889_136092755_136092870_136096924_136097062_136097726_136097908_136098879_136099045_136099325_136099444_136099896_136100068_136100540_136100741_136101774
ONT_simulated_read_8175571	chr2	+	779	9	FSM	ENSMUSG00000079484.13	ENST00000308941.9	809	9	7	23	7	-23	multi-exon	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCTGGAGCCCAGGGAAT	NA	NA	NA	NA	NA	NA	NA	NA	30156925	30171126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_30156954_30159700_30159864_30164487_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30169966_30170096_30170182_30170300_30171021
ONT_simulated_read_8177475	chr1	-	1287	1	Antisense	novelGene_ENSMUSG00000015222.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	159	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGCTTCGACTAAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	66454464	66453177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr1_-_66453200_66454500
ONT_simulated_read_8178954	chr5	+	1751	7	ISM	ENSMUSG00000034462.10	ENSMUST00000086831.4	5219	15	120	19031	120	-17059	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGGTATTTTTGGTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	104607435	104634654	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_104608092_104614748_104614863_104624908_104625043_104626656_104626908_104628015_104628241_104630890_104631120_104634512
ONT_simulated_read_817950	chr11	-	1060	1	ISM	ENSMUSG00000020283.6	ENSMUST00000020523.4	4146	4	16396	2025	16396	-2025	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAATTTTCTGCTTCTA	NA	NA	NA	NA	NA	NA	NA	NA	23599563	23598503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_23598500_23599600
ONT_simulated_read_8181029	chr9	-	2483	1	ISM	ENSMUSG00000059820.15	ENSMUST00000131351.8	3316	6	9573	169	9376	-165	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTCCACGATCAGCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	50519191	50516708	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_50516700_50519200
ONT_simulated_read_8181139	chr11	+	1841	6	ISM	ENSMUSG00000034177.16	ENSMUST00000040089.5	3670	9	27529	1314	27529	-315	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGAGTGTGCTCCAGATG	NA	NA	NA	NA	NA	NA	NA	NA	87618251	87625051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_87618294_87618851_87618957_87620225_87620388_87620957_87621061_87621852_87623212_87624981
ONT_simulated_read_8181796	chr9	+	351	3	ISM	ENSMUSG00000038708.11	ENST00000444882.5	1388	4	205	55359	184	-55356	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGACTGTTCTGCTGCGGCC	NA	NA	NA	NA	NA	NA	NA	NA	118335518	118356231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_118335626_118343247_118343338_118356077
ONT_simulated_read_8182264	chr7	+	847	8	ISM	ENSMUSG00000053898.13	ENSMUST00000066264.13	1267	10	987	0	987	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	200	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	28525628	28531672	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28530886_28531141_28531293_28531428
ONT_simulated_read_818765	chr19	-	706	4	ISM	ENSMUSG00000041488.17	ENSMUST00000211641.2	1018	11	33368	-345	33196	345	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATCATGGTACTCCCTAC	NA	NA	NA	NA	NA	NA	NA	NA	11762889	11753576	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_11753953_11754451_11754535_11760163_11760275_11762753
ONT_simulated_read_8188204	chr6	+	523	1	FSM	ENSMUSG00000101878.2	ENSMUST00000173192.2	387	1	0	-136	0	136	mono-exon	FALSE	NA	NA	NA	NA	NA	244	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAATTAGCCTTCCAACCA	NA	NA	NA	NA	NA	NA	NA	NA	116150697	116151220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_116150700_116151200
ONT_simulated_read_8188672	chr9	+	1034	10	ISM	ENSMUSG00000032374.15	ENSMUST00000160359.2	3663	20	53081	1530	53081	-1530	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATTATGACAAACATATGA	NA	NA	NA	NA	NA	NA	NA	NA	92477397	92488943	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_92477437_92478388_92478494_92480640_92480767_92482793_92482936_92484037_92484101_92485000_92485115_92486831_92486898_92487425_92487531_92488560_92488708_92488816
ONT_simulated_read_8188810	chr8	+	888	10	ISM	ENSMUSG00000031626.19	ENST00000393528.7	2860	23	472	53304	398	-4229	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGCCTCCCCCACACGTC	NA	NA	NA	NA	NA	NA	NA	NA	46081237	46225690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_46081310_46111839_46111979_46189189_46189240_46198456_46198484_46198822_46198879_46212089_46212229_46216055_46216229_46222865_46222933_46223582_46223628_46225570
ONT_simulated_read_8189966	chr4	-	711	3	ISM	ENSMUSG00000028454.17	ENST00000298004.9	2290	11	-3	5791	-3	-5791	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTGGTCACAAGCACG	NA	NA	NA	NA	NA	NA	NA	NA	43025080	43023444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_43023494_43023671_43023816_43024562
ONT_simulated_read_819024	chr2	-	767	6	ISM	ENSMUSG00000036890.14	ENST00000241391.9	2244	8	73360	1079	4246	-1079	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTAAATTCAGGTCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	44642203	44455512	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_44455547_44460430_44460523_44461224_44461296_44481892_44482003_44525013_44525329_44642058
ONT_simulated_read_8190839	chr14	-	572	6	ISM	ENSMUSG00000042567.21	ENST00000383771.8	1349	13	39023	-2	39023	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	147	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCCAAGGTTTACTCTCAA	NA	NA	NA	NA	NA	NA	NA	NA	7500165	7468558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_7468619_7468698_7468752_7470570_7470680_7482985_7483097_7489147_7489249_7500027
ONT_simulated_read_8191139	chr5	-	345	3	ISM	ENSMUSG00000070733.14	ENSMUST00000094700.11	9852	60	50571	74235	50571	-74235	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAGAAGCACTTGAAAG	NA	NA	NA	NA	NA	NA	NA	NA	73254908	73252788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_73252817_73253616_73253742_73254716
ONT_simulated_read_819201	chr14	-	755	1	FSM	ENSMUSG00000023156.5	ENSMUST00000180369.2	477	1	-160	-118	-160	118	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGGAGACTTCCAGATTG	NA	NA	NA	NA	NA	NA	NA	NA	14379855	14379100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_14379100_14379900
ONT_simulated_read_8195845	chr12	+	1575	10	ISM	ENSMUSG00000021185.17	ENSMUST00000069782.11	3295	13	79	15603	41	-15341	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGACCCCATTGATGACA	NA	NA	NA	NA	NA	NA	NA	NA	100745394	100823266	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_100745570_100795857_100795985_100801443_100801595_100804758_100804958_100807629_100807781_100808901_100809025_100810988_100811190_100816371_100816633_100819472_100819573_100823179
ONT_simulated_read_8198321	chr3	-	261	2	ISM	ENSMUSG00000074653.11	ENST00000523069.1	1347	7	6290	1966	6290	1659	internal_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTTGTCAAGGTTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	30739175	30735169	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_30735263_30739007
ONT_simulated_read_8200868	chr4	-	247	3	ISM	ENSMUSG00000033770.14	ENST00000439316.6	1888	17	2852	9173	2852	-9173	internal_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTCCGTCTCCTGGCGGT	NA	NA	NA	NA	NA	NA	NA	NA	141122508	141121760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_141121850_141122269_141122349_141122429
ONT_simulated_read_8207836	chr12	-	1461	1	ISM	ENSMUSG00000090935.11	ENSMUST00000163402.8	4655	4	31647	1863	10166	-662	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAACTAAGCCATTCAGTA	NA	NA	NA	NA	NA	NA	NA	NA	81548038	81546577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_81546600_81548000
ONT_simulated_read_8209120	chr2	-	1816	5	ISM	ENSMUSG00000026885.14	ENSMUST00000028248.11	3176	10	90248	0	90248	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGTTTCTCAAAATGAG	NA	NA	NA	NA	NA	NA	NA	NA	35779388	35641252	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_35642505_35674100_35674208_35685368_35685615_35707734_35707834_35779276
ONT_simulated_read_8210554	chr6	-	586	1	NIC	ENSMUSG00000029826.15	novel	4944	13	NA	NA	37867	-153	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGAGATGAAGTTCACTAA	NA	NA	NA	NA	NA	NA	NA	NA	38293341	38292755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_38292800_38293300
ONT_simulated_read_8212762	chr10	+	1691	13	ISM	ENSMUSG00000032763.12	ENSMUST00000218885.2	2233	15	1955	53	1926	-53	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTCAGCTGTACCCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	78412782	78420260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ONT_simulated_read_8214030	chr2	-	709	1	ISM	ENSMUSG00000045319.14	ENSMUST00000114942.9	4398	4	28886	3010	28821	-592	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGCAGCGAGCCCAGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	6106136	6105427	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_6105400_6106100
ONT_simulated_read_8214561	chr8	-	139	1	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	5304	-13893	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTACAAGGTAGTCCGAG	NA	NA	NA	NA	NA	NA	NA	NA	56998588	56998449	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_56998400_56998600
ONT_simulated_read_8218606	chr15	-	344	1	ISM	ENSMUSG00000054277.9	ENSMUST00000067215.9	2619	16	49575	590	49502	351	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAACAAAAACAGCAAGACC	NA	NA	NA	NA	NA	NA	NA	NA	83184873	83184529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_83184500_83184900
ONT_simulated_read_8218994	chr6	-	715	1	ISM	ENSMUSG00000029918.10	ENSMUST00000031978.9	1107	3	8470	0	3524	0	mono-exon	FALSE	NA	NA	NA	NA	NA	565	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTTTTGAGACAGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	39779452	39778737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_39778700_39779500
ONT_simulated_read_8220919	chr15	+	359	4	ISM	ENSMUSG00000022255.17	ENST00000519934.5	2171	11	31867	10140	31867	-10140	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTGGAATGCACCAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	34115087	34131337	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_34115122_34116456_34116523_34118025_34118257_34131309
ONT_simulated_read_822115	chr9	-	374	1	FSM	ENSMUSG00000050621.8	ENSMUST00000053150.8	374	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTATCCCTTGGCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	114811807	114811433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_114811400_114811800
ONT_simulated_read_8221824	chr2	-	1353	6	ISM	ENSMUSG00000013465.20	ENSMUST00000059849.15	2637	13	7506	0	7506	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	101	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGAGGAATCTGTTTGTC	NA	NA	NA	NA	NA	NA	NA	NA	25093995	25089723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898
ONT_simulated_read_8221877	chr9	+	2042	14	ISM	ENSMUSG00000036466.18	ENST00000288745.7	5352	21	154434	2374	154433	-465	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAACGGGACTGGGGTAAC	NA	NA	NA	NA	NA	NA	NA	NA	64567740	64614107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_64567797_64586460_64586582_64587515_64587680_64588671_64588775_64593161_64593309_64593644_64593780_64597283_64597413_64598502_64598632_64599076_64599206_64599636_64599766_64601042_64601280_64607378_64607436_64613008_64613216_64613808
ONT_simulated_read_8222410	chr4	-	387	4	ISM	ENSMUSG00000039137.19	ENSMUST00000063672.10	2804	7	34606	1402	34566	-1402	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCCTGGGGAATCAGACT	NA	NA	NA	NA	NA	NA	NA	NA	63379622	63351071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_63351115_63352346_63352384_63353596_63353800_63379518
ONT_simulated_read_8223755	chr19	+	524	8	ISM	ENSMUSG00000108414.2	ENSMUST00000205825.2	495	9	256	-98	256	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	8701766	8703807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ONT_simulated_read_8223907	chr8	-	622	1	FSM	ENSMUSG00000052837.8	ENSMUST00000064922.7	1809	1	0	1187	0	-1187	mono-exon	FALSE	NA	NA	NA	NA	NA	400	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGGGGTGGCAGCGG	NA	NA	NA	NA	NA	NA	NA	NA	85705347	85704725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_85704700_85705300
ONT_simulated_read_8224094	chr5	-	817	1	ISM	ENSMUSG00000029699.14	ENSMUST00000111153.8	2745	11	13344	160	1084	-147	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCAGAGGAGCCCTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	135990041	135989224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_135989200_135990000
ONT_simulated_read_8225270	chr18	+	949	1	Genic_Genomic	ENSMUSG00000102918.2	novel	NA	NA	NA	NA	-46	-32872	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCACCCCCAGGCACGCG	NA	NA	NA	NA	NA	NA	NA	NA	37939416	37940365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr18_+_37939400_37940400
ONT_simulated_read_8226645	chr7	+	762	1	FSM	ENSMUSG00000046721.12	ENSMUST00000026901.12	653	1	0	-109	0	109	mono-exon	FALSE	NA	NA	NA	NA	NA	223	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGGGCAGTGGTGGCAC	NA	NA	NA	NA	NA	NA	NA	NA	44974388	44975150	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_44974400_44975200
ONT_simulated_read_8227194	chr1	-	263	1	NIC	ENSMUSG00000026189.14	novel	1186	8	NA	NA	24825	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTTATCTTTTAAGGATT	NA	NA	NA	NA	NA	NA	NA	NA	72298593	72298330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_72298300_72298600
ONT_simulated_read_8228277	chr18	-	2352	2	ISM	ENSMUSG00000054008.10	ENSMUST00000235795.2	5262	3	13979	2779	-195	-1295	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCCATCCATCTTACTAG	NA	NA	NA	NA	NA	NA	NA	NA	60846656	60820344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_60821920_60845879
ONT_simulated_read_8228309	chr5	-	1686	1	NIC	ENSMUSG00000029505.18	novel	10608	52	NA	NA	30475	75	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGGGTTTTCTTACCTT	NA	NA	NA	NA	NA	NA	NA	NA	110887546	110885860	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_110885900_110887500
ONT_simulated_read_8228366	chr2	-	1567	1	ISM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	11859	1329	11859	-1329	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGTACAGAGTGAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	121325287	121323720	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_121323700_121325300
ONT_simulated_read_82298	chr12	-	1526	12	ISM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	7924	-13	6001	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGGTGACATTTCACAAT	NA	NA	NA	NA	NA	NA	NA	NA	84656220	84649413	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152
ONT_simulated_read_8230667	chr2	-	835	3	ISM	ENSMUSG00000039483.11	ENST00000277459.8	1007	4	1334	-1	1334	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	296	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCAAGACACTTGCTGAC	NA	NA	NA	NA	NA	NA	NA	NA	30715768	30713870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_30714517_30714652_30714740_30715666
ONT_simulated_read_823511	chr1	-	1364	6	ISM	ENSMUSG00000026047.14	ENSMUST00000065767.9	2359	10	5647	0	5375	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATCTGGCCTCTGCCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	44152321	44145705	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152043_44152162
ONT_simulated_read_8235989	chr11	+	416	2	ISM	ENSMUSG00000020544.15	ENSMUST00000020851.15	1224	4	0	4519	0	-4249	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTCAGACCAGATCGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	90528998	90531238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_90529379_90531202
ONT_simulated_read_8236453	chr13	-	2007	1	ISM	ENSMUSG00000048376.7	ENSMUST00000059193.7	3336	2	13573	1105	13573	-1105	mono-exon	FALSE	NA	NA	NA	NA	NA	904	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCCCATCCTGCTAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	95741422	95739415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_95739400_95741400
ONT_simulated_read_8237251	chr4	+	132	1	NIC	ENSMUSG00000028524.22	novel	4305	24	NA	NA	201831	-7830	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGTTAGAGCACGTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	102819552	102819684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_+_102819600_102819700
ONT_simulated_read_8239474	chr8	+	682	5	ISM	ENSMUSG00000005161.16	ENSMUST00000109734.8	1612	6	24	3213	0	-2688	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGACGCTCTGTAGACG	NA	NA	NA	NA	NA	NA	NA	NA	85696239	85698250	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_85696392_85696780_85696974_85697064_85697219_85697915_85698039_85698190
ONT_simulated_read_824030	chr6	+	612	5	ISM	ENSMUSG00000058440.15	ENST00000223190.8	2436	11	27	50259	0	-27128	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACCATCGATGGGATTCC	NA	NA	NA	NA	NA	NA	NA	NA	30048070	30102263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_30048113_30089913_30090146_30095338_30095454_30098447_30098575_30102167
ONT_simulated_read_8240502	chr11	-	492	4	ISM	ENSMUSG00000010392.9	ENST00000225724.9	857	8	6221	9188	6221	-3328	internal_fragment	FALSE	canonical	NA	NA	NA	NA	594	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACATTACTCTGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	76639408	76620755	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333
ONT_simulated_read_8243640	chrX	+	246	2	ISM	ENSMUSG00000025037.7	ENSMUST00000026013.6	4167	15	0	53607	0	-53607	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAATTAATGTCTTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	16485936	16500450	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_16486153_16500420
ONT_simulated_read_8245007	chr18	+	2370	20	FSM	ENSMUSG00000024302.17	ENST00000598334.5	3146	20	36	740	0	-740	multi-exon	FALSE	canonical	NA	NA	NA	NA	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTTCCTTGGCTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	23548566	23791756	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_23548683_23608172_23608300_23668218_23668287_23678742_23678824_23702618_23702833_23716140_23716227_23723245_23723401_23726028_23726135_23728515_23728683_23730490_23730616_23735647_23735732_23754443_23754532_23755023_23755122_23758138_23758253_23764388_23764486_23776203_23776364_23779253_23779344_23779944_23780111_23784572_23784706_23791661
ONT_simulated_read_8245093	chr7	-	1098	8	ISM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	76599	2180	76599	-2180	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATTATTCCTTAGAAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	80376565	80363510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_80363694_80366758_80366868_80370616_80370740_80372709_80372877_80373526_80373740_80375334_80375423_80375713_80375850_80376486
ONT_simulated_read_8246008	chr2	-	610	7	ISM	ENSMUSG00000039128.14	ENSMUST00000043864.9	1827	13	21966	4067	21724	-2812	internal_fragment	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGACCGACCATTTCCGT	NA	NA	NA	NA	NA	NA	NA	NA	5828009	5803171	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912
ONT_simulated_read_8246822	chr5	-	612	5	ISM	ENSMUSG00000029434.13	ENST00000267199.9	1816	13	9388	4283	9388	-4283	internal_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAAGGTGCTGAGACTGG	NA	NA	NA	NA	NA	NA	NA	NA	123701661	123673370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_123673415_123674595_123674664_123685064_123685192_123696676_123696877_123701488
ONT_simulated_read_824765	chr1	+	825	3	ISM	ENSMUSG00000026622.16	ENSMUST00000027931.8	3227	8	5704	1437	5704	-1437	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTATAGATACTATAGATC	NA	NA	NA	NA	NA	NA	NA	NA	191559259	191563725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_191559482_191561503_191561630_191563248
ONT_simulated_read_8249238	chr17	+	488	4	ISM	ENSMUSG00000042099.17	ENSMUST00000172649.8	2652	11	11307	128	11307	-128	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGGCACCTTGAGAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	34040803	34041760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34040889_34040979_34041181_34041259_34041350_34041648
ONT_simulated_read_8251727	chr11	-	1029	10	ISM	ENSMUSG00000097239.8	ENSMUST00000107257.8	1898	17	2567	3477	2567	-3302	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGTGGTGTGGTCACAC	NA	NA	NA	NA	NA	NA	NA	NA	101312778	101300966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_101301032_101301179_101301247_101301586_101301718_101301908_101302026_101302119_101302277_101302765_101302824_101304762_101304923_101307928_101308061_101310500_101310555_101312690
ONT_simulated_read_8256170	chr2	-	921	2	ISM	ENSMUSG00000027082.16	ENSMUST00000111711.8	3968	8	32612	2379	29648	-1796	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTTCACCTATACGTTC	NA	NA	NA	NA	NA	NA	NA	NA	84274480	84272862	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_84273657_84274353
ONT_simulated_read_8256718	chr15	-	114	2	ISM	ENSMUSG00000022986.6	ENST00000252245.6	2137	8	3646	3936	3646	-3936	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACCGGATGATCCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	101478636	101476777	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_101476850_101478594
ONT_simulated_read_8263561	chr11	-	1221	8	ISM	ENSMUSG00000069769.14	ENSMUST00000092794.12	1855	14	238048	217	-66061	-27	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGATACGCGGAGCGGGA	NA	NA	NA	NA	NA	NA	NA	NA	88370879	88234931	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_88235487_88237878_88237952_88239609_88239819_88257610_88257674_88276870_88276946_88285390_88285506_88304733_88304817_88370831
ONT_simulated_read_8263914	chr3	+	270	1	ISM	ENSMUSG00000027942.18	ENSMUST00000160640.8	2510	7	9982	276	9854	-276	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTTCTCTTCAGTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	89970102	89970372	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89970100_89970400
ONT_simulated_read_8264040	chr2	+	1055	1	FSM	ENSMUSG00000109946.2	ENSMUST00000209765.2	1898	1	179	664	179	-664	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCATCTTAGTTCGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	27332514	27333569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_27332500_27333600
ONT_simulated_read_826700	chr14	-	645	5	ISM	ENSMUSG00000063410.9	ENST00000455035.1	1240	10	76590	1473	76590	-1473	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTTTATCCACAATCATT	NA	NA	NA	NA	NA	NA	NA	NA	121539755	121530870	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_121530902_121531601_121531726_121532066_121532213_121534546_121534733_121539597
ONT_simulated_read_8267118	chr6	-	425	5	ISM	ENSMUSG00000029814.11	ENST00000619562.4	1762	8	14819	938	14819	-64	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGGTAAAGCAGCACCAGC	NA	NA	NA	NA	NA	NA	NA	NA	49071145	49064342	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073
ONT_simulated_read_826806	chr15	-	2150	4	ISM	ENSMUSG00000051853.11	ENST00000256682.9	3430	6	20359	1195	20359	-1195	internal_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGTTCCTCCACTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	98640696	98636684	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_98638376_98638871_98638997_98639204_98639316_98640473
ONT_simulated_read_8268984	chr7	-	672	3	ISM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	2281	11230	2281	-11230	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAACTTGACCCTGACCTGT	NA	NA	NA	NA	NA	NA	NA	NA	19652804	19648732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_19648790_19650798_19651096_19652486
ONT_simulated_read_8271265	chr8	+	434	1	ISM	ENSMUSG00000031577.11	ENSMUST00000209851.2	3133	7	10236	70	9556	-70	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACACATGTAAAAGTCAACA	NA	NA	NA	NA	NA	NA	NA	NA	31650578	31651012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_31650600_31651000
ONT_simulated_read_8271993	chrX	-	1319	1	ISM	ENSMUSG00000031278.13	ENSMUST00000112907.8	5137	16	69510	1523	69510	-1289	mono-exon	FALSE	NA	NA	NA	NA	NA	203	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGAGTTTTAGAAACT	NA	NA	NA	NA	NA	NA	NA	NA	141103830	141102511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_141102500_141103800
ONT_simulated_read_827381	chr2	+	277	1	ISM	ENSMUSG00000039205.17	ENSMUST00000113332.8	2973	18	155	14674	155	-14668	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAACTGGAAGCCCCGAA	NA	NA	NA	NA	NA	NA	NA	NA	32253364	32253641	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_32253400_32253600
ONT_simulated_read_8274233	chr11	-	970	9	ISM	ENSMUSG00000014195.17	ENSMUST00000146840.3	1828	14	14628	1490	583	-1236	internal_fragment	FALSE	canonical	NA	NA	NA	NA	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAAGGAGGAGGAGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	100489555	100475160	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440
ONT_simulated_read_8278466	chr15	-	2169	1	ISM	ENSMUSG00000051853.11	ENSMUST00000053183.12	4566	5	22742	1667	22705	-692	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTGCCTTCTCCGTTC	NA	NA	NA	NA	NA	NA	NA	NA	98638350	98636181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_98636200_98638400
ONT_simulated_read_8281434	chr14	-	777	1	Genic_Genomic	ENSMUSG00000021891.9	novel	NA	NA	NA	NA	12885	1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACCTCTTTATATGTAT	NA	NA	NA	NA	NA	NA	NA	NA	31204080	31203303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr14_-_31203300_31204100
ONT_simulated_read_8281677	chr6	+	2013	1	FSM	ENSMUSG00000037827.6	ENSMUST00000036712.6	1479	1	0	-534	0	534	mono-exon	FALSE	NA	NA	NA	NA	NA	569	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACCTCGAGGATTCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	128621875	128623888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_128621900_128623900
ONT_simulated_read_8282958	chr7	-	349	4	ISM	ENSMUSG00000005447.13	ENSMUST00000108410.8	689	5	136	310	136	-310	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACCCCAACCCACTTCG	NA	NA	NA	NA	NA	NA	NA	NA	24996601	24994783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510
ONT_simulated_read_8284478	chr14	-	1244	11	ISM	ENSMUSG00000021814.18	ENSMUST00000224975.2	2727	13	8383	1252	8383	-1252	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACGAGTGGAGATTACAGG	NA	NA	NA	NA	NA	NA	NA	NA	20521596	20506596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435
ONT_simulated_read_8285452	chr10	+	531	4	ISM	ENSMUSG00000035351.17	ENSMUST00000169309.3	1277	10	27362	-2	27362	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGTTCCTATTGTGTT	NA	NA	NA	NA	NA	NA	NA	NA	88010300	88014252	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_88010430_88010744_88010796_88012934_88013029_88013995
ONT_simulated_read_8285860	chrX	-	570	1	ISM	ENSMUSG00000031399.16	ENSMUST00000114143.10	1899	9	7867	117	7329	-75	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAGTCCAATCAGAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	73429011	73428441	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_73428400_73429000
ONT_simulated_read_8286046	chr2	-	2984	6	ISM	ENSMUSG00000026933.18	ENST00000409386.3	5566	18	42691	4648	42691	-3927	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTCCCACTGCTGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	25830319	25823664	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25823722_25824231_25824348_25825473_25825577_25825861_25826071_25826526_25826664_25827957
ONT_simulated_read_8287137	chr10	-	668	5	ISM	ENSMUSG00000056888.12	ENSMUST00000074805.12	1081	6	3583	7	3583	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTCTAAGTCTACAGAG	NA	NA	NA	NA	NA	NA	NA	NA	111829586	111821359	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_111821588_111821682_111821710_111822493_111822580_111824704_111824791_111829345
ONT_simulated_read_8287533	chr13	-	431	1	ISM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	90594	4070	21674	-4070	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTGCTAGGTATTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	99562454	99562023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_99562000_99562500
ONT_simulated_read_8288285	chrX	+	1556	10	ISM	ENSMUSG00000035967.16	ENST00000639893.2	3866	18	28938	2889	28933	-2889	internal_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTGCAGTCTTTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	55529177	55550302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55539492_55539604_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084
ONT_simulated_read_8289189	chr16	+	619	3	ISM	ENSMUSG00000040605.8	ENST00000347667.5	3030	8	58289	1529	58289	-1529	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	169	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGCAACTGAATGCCTTC	NA	NA	NA	NA	NA	NA	NA	NA	97216277	97238188	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_97216381_97225689_97225859_97237841
ONT_simulated_read_8289201	chr11	-	963	9	NNC	ENSMUSG00000018593.14	novel	2115	10	NA	NA	9919	-99	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTAAAATGTTTGGATG	NA	NA	NA	NA	NA	NA	NA	NA	55300805	55286345	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298100_55300753
ONT_simulated_read_8289411	chr10	+	491	4	ISM	ENSMUSG00000071317.5	ENSMUST00000095715.5	4368	8	0	26334	0	-26334	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGGTGTCTACCATCGG	NA	NA	NA	NA	NA	NA	NA	NA	45211867	45222241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_45211978_45215315_45215553_45219129_45219255_45222222
ONT_simulated_read_8291765	chr9	-	2688	1	ISM	ENSMUSG00000019066.14	ENSMUST00000115351.10	3835	5	7530	484	7455	-465	mono-exon	FALSE	NA	NA	NA	NA	NA	262	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCAGGAGACTCAGGAGT	NA	NA	NA	NA	NA	NA	NA	NA	21821958	21819270	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21819300_21822000
ONT_simulated_read_8294640	chr1	-	2300	1	ISM	ENSMUSG00000026556.16	ENSMUST00000027837.13	5698	8	22468	1568	22468	-1568	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCAGAGGAGAACCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	171832394	171830094	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_171830100_171832400
ONT_simulated_read_8294798	chr7	-	593	2	ISM	ENSMUSG00000044465.20	ENSMUST00000048079.14	3443	12	9690	10981	9690	-10980	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGGGCCAGTTCGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	105039519	105038798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_105039100_105039227
ONT_simulated_read_8297170	chr7	+	1095	11	ISM	ENSMUSG00000030562.18	ENST00000527626.5	1729	14	39	25231	17	-23899	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGCAGAGACATCCAATC	NA	NA	NA	NA	NA	NA	NA	NA	86896019	87021172	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_86896111_86896695_86896792_86963271_86963345_86966438_86966520_86970753_86970971_86972840_86973006_86973140_86973204_86988164_86988226_87009935_87010018_87019225_87019346_87021126
ONT_simulated_read_8299568	chr5	+	1734	16	ISM	ENSMUSG00000004952.14	ENSMUST00000042135.14	2914	21	173	7971	-18	2875	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTGTTCATCCACAGGAC	NA	NA	NA	NA	NA	NA	NA	NA	136112942	136132743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121991_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130249_136130478_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690
ONT_simulated_read_8300192	chr1	+	354	4	ISM	ENSMUSG00000073702.12	ENSMUST00000178079.8	487	5	0	368	0	-368	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGGATGAGGATTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	39407009	39410077	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_39407088_39407229_39407337_39409094_39409221_39410034
ONT_simulated_read_8301002	chr17	+	975	4	ISM	ENSMUSG00000002280.12	ENSMUST00000002350.11	2555	11	7032	783	6998	-242	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCCATGGACATCTTGTGA	NA	NA	NA	NA	NA	NA	NA	NA	25999781	26001523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_25999927_26000214_26000353_26000661_26000820_26000989
ONT_simulated_read_8301893	chr2	-	485	1	ISM	ENSMUSG00000015776.13	ENSMUST00000102899.10	3506	3	2376	2555	2268	-2229	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTGTCTTACTGCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	26798313	26797828	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_26797800_26798300
ONT_simulated_read_8301960	chr5	+	710	1	FSM	ENSMUSG00000106646.2	ENSMUST00000197556.2	1742	1	51	981	51	-981	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTTCCCGATTCTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	58204723	58205433	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_+_58204700_58205400
ONT_simulated_read_8303295	chr3	-	887	5	ISM	ENSMUSG00000028108.17	ENSMUST00000117507.10	1901	11	1874	1189	1872	-1188	internal_fragment	FALSE	canonical	NA	NA	NA	NA	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCCGTGATGAGTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	95645007	95642647	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_95642732_95643158_95643534_95643783_95644104_95644324_95644370_95644944
ONT_simulated_read_8305122	chr4	+	1161	9	ISM	ENSMUSG00000028224.15	ENSMUST00000029879.15	2533	16	42	16495	42	-16495	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCCCAAGTGCTCCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	15957966	15976094	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_15958111_15962310_15962445_15963771_15963921_15964246_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034
ONT_simulated_read_8306150	chr2	-	695	1	ISM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	26802	1339	26686	-41	mono-exon	FALSE	NA	NA	NA	NA	NA	345	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGGCTCAAGCAGCAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	125674257	125673562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_125673600_125674300
ONT_simulated_read_8306188	chr6	+	238	1	FSM	ENSMUSG00000104222.2	ENSMUST00000194706.2	2527	1	131	2158	131	-2158	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTCTGCGGCCTAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	117693433	117693671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_117693400_117693700
ONT_simulated_read_8309815	chr2	+	354	3	FSM	ENSMUSG00000074884.13	ENST00000630046.2	734	3	358	22	0	-22	multi-exon	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACAGCGCCAGAGCCACT	NA	NA	NA	NA	NA	NA	NA	NA	121279863	121286242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_121279923_121280455_121280565_121286056
ONT_simulated_read_831048	chr3	-	259	3	ISM	ENSMUSG00000027829.16	ENSMUST00000029416.14	2169	11	10251	740	10130	-740	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTCACAGTGAAAGCCC	NA	NA	NA	NA	NA	NA	NA	NA	65855419	65854311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_65854370_65855111_65855211_65855317
ONT_simulated_read_8310684	chr4	-	342	4	ISM	ENSMUSG00000040387.17	ENST00000369261.9	3006	9	85	66014	85	-64961	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGACCTCTTTCACCTC	NA	NA	NA	NA	NA	NA	NA	NA	24792714	24682233	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_24682271_24708952_24709052_24743857_24743966_24792616
ONT_simulated_read_8311460	chr17	+	935	1	FSM	ENSMUSG00000043683.5	ENSMUST00000060253.5	6801	1	0	5866	0	-5866	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGCAGCTGTGGAAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	56563809	56564744	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_56563800_56564700
ONT_simulated_read_8313231	chr14	+	294	1	ISM	ENSMUSG00000022010.20	ENSMUST00000110888.8	4999	5	3690	88818	3064	-86793	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTCTCTTCCCGTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	76656090	76656384	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_76656100_76656400
ONT_simulated_read_8313900	chr7	+	686	4	ISM	ENSMUSG00000002603.16	ENST00000677934.1	1081	5	4549	-1	4549	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGGTCTCCGTGTCATT	NA	NA	NA	NA	NA	NA	NA	NA	25391842	25404502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_25391963_25393647_25393766_25403549_25403704_25404208
ONT_simulated_read_8314108	chr10	+	872	7	ISM	ENSMUSG00000006344.18	ENST00000398292.3	2094	12	98	6370	98	3402	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCATCACCTTGTAGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	75425625	75444637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_75425717_75438453_75438585_75438807_75438904_75439800_75439997_75440476_75440635_75441089_75441237_75444584
ONT_simulated_read_8316680	chr10	-	226	1	ISM	ENSMUSG00000090034.2	ENSMUST00000162771.2	487	3	3103	0	3103	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTGGTCTCATCTGG	NA	NA	NA	NA	NA	NA	NA	NA	81408671	81408445	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_81408400_81408700
ONT_simulated_read_8321490	chr7	-	339	4	ISM	ENSMUSG00000053565.11	ENSMUST00000207683.2	647	7	7117	-1	7103	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	412	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTGTCTCTTGCCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	28674095	28670796	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027
ONT_simulated_read_8323957	chr11	-	1093	6	ISM	ENSMUSG00000017286.16	ENSMUST00000017430.12	1434	9	5911	0	5645	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAAAAAAACAAAAG	NA	NA	NA	NA	NA	NA	NA	NA	76128640	76112335	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494
ONT_simulated_read_8325033	chrX	+	663	5	NIC	ENSMUSG00000019359.15	novel	2495	16	NA	NA	6154	-190	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGAGGAGGGAGCATTG	NA	NA	NA	NA	NA	NA	NA	NA	99779945	99781985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_+_99780079_99780294_99780444_99781070_99781219_99781356_99781440_99781835
ONT_simulated_read_8326568	chr10	+	638	5	ISM	ENSMUSG00000037876.18	ENST00000542921.5	8098	25	52254	15260	52254	-15260	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGACATCATTGCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	67073926	67076475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_67073977_67074585_67074714_67075027_67075239_67075640_67075856_67076441
ONT_simulated_read_8329962	chr5	-	760	5	ISM	ENSMUSG00000029145.13	ENSMUST00000202758.4	1767	13	2549	62	2549	-61	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCGAGTCAAGAGCAGTG	NA	NA	NA	NA	NA	NA	NA	NA	31347803	31344972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702
ONT_simulated_read_833313	chr4	+	1390	7	FSM	ENSMUSG00000006390.16	ENST00000413844.3	1425	7	33	2	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	1475	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGATTGTGTGTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	118285289	118289810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_118285413_118287692_118287753_118287911_118288103_118288462_118288520_118288605_118288712_118288793_118288931_118289094
ONT_simulated_read_8333752	chr9	-	1395	9	ISM	ENSMUSG00000032312.8	ENSMUST00000217314.2	2162	13	3680	390	3680	-104	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTCGCCTTCTTAGAGT	NA	NA	NA	NA	NA	NA	NA	NA	57537670	57534319	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450
ONT_simulated_read_8335114	chr7	-	1799	1	ISM	ENSMUSG00000061374.15	ENSMUST00000167804.9	2637	3	5067	329	4052	-113	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGGAATGGGCTGGTGTC	NA	NA	NA	NA	NA	NA	NA	NA	5012185	5010386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_5010400_5012200
ONT_simulated_read_8335533	chr2	+	331	1	FSM	ENSMUSG00000066068.6	ENSMUST00000118269.2	318	1	51	-64	51	64	mono-exon	FALSE	NA	NA	NA	NA	NA	664	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATGAATACTGTCTAAG	NA	NA	NA	NA	NA	NA	NA	NA	32161907	32162238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_32161900_32162200
ONT_simulated_read_8336816	chr10	-	489	7	ISM	ENSMUSG00000020184.16	ENSMUST00000020408.16	3099	12	736	7166	-236	-5825	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGCGCCACCAGAAGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	117545927	117531945	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850
ONT_simulated_read_8338374	chr8	-	1222	1	NIC	ENSMUSG00000071302.11	novel	1776	5	NA	NA	1844	-768	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGCTACTCTTGGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	129946587	129945365	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_129945400_129946600
ONT_simulated_read_8341047	chr1	-	1389	6	ISM	ENSMUSG00000090272.10	ENSMUST00000188804.7	2026	10	7295	0	2850	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCATTATATAGTGCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	173700576	173684785	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_173685077_173687741_173687931_173690026_173690450_173692964_173693124_173698943_173699112_173700417
ONT_simulated_read_8344347	chr11	-	539	1	ISM	ENSMUSG00000053113.4	ENSMUST00000054002.4	2552	2	889	1680	889	-1680	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTACCCCCAAGAGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	117859123	117858584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_117858600_117859100
ONT_simulated_read_8344690	chr9	+	766	9	ISM	ENSMUSG00000041506.16	ENSMUST00000047721.10	1586	15	456	1607	456	-1607	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATGGGACCGTGCGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	106354923	106361016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945
ONT_simulated_read_8345301	chr7	-	436	3	ISM	ENSMUSG00000048330.15	ENST00000425599.6	864	4	25308	273	25308	-273	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	267	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGCCCACTGACCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	108657185	108637923	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_108638091_108655950_108656024_108656989
ONT_simulated_read_8346344	chr18	-	749	9	ISM	ENSMUSG00000053644.14	ENST00000637272.1	1489	16	11811	1050	11811	-1050	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCGTGGAAGAAGCCAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	56683492	56665610	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_56665667_56667261_56667347_56670275_56670363_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367
ONT_simulated_read_8350779	chr12	+	676	4	ISM	ENSMUSG00000048833.10	ENST00000557046.1	858	6	21631	0	21631	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTCAGGTTCCAGCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	80713285	80726479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_80713510_80722622_80722709_80723905_80724041_80726248
ONT_simulated_read_8352314	chr15	+	505	5	ISM	ENSMUSG00000023051.12	ENST00000552857.5	912	6	83	458	39	-458	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTAGGGGCTCTGGGCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	102426932	102431399	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_102427038_102429555_102429649_102430158_102430232_102430415_102430534_102431283
ONT_simulated_read_835811	chr7	-	228	1	ISM	ENSMUSG00000031004.9	ENSMUST00000033310.9	10061	14	26277	73	26277	-73	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACAGTTTAGGGGTGAGC	NA	NA	NA	NA	NA	NA	NA	NA	135291813	135291585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_135291600_135291800
ONT_simulated_read_8360825	chr4	-	265	1	ISM	ENSMUSG00000035495.16	ENSMUST00000107772.8	3726	10	21415	2050	21378	-1064	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACATGCAGACTTAAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	46117060	46116795	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_46116800_46117100
ONT_simulated_read_836364	chr1	+	502	1	ISM	ENSMUSG00000026269.15	ENSMUST00000027487.15	3337	11	0	9557	0	-9557	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCCCCGGGGTCGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	92838504	92839006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_92838500_92839000
ONT_simulated_read_8364418	chr10	-	1328	1	ISM	ENSMUSG00000034602.16	ENSMUST00000073792.11	9301	36	80673	2445	80193	844	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAATTAATTATGCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	122831737	122830409	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_122830400_122831700
ONT_simulated_read_836461	chr2	-	992	6	ISM	ENSMUSG00000027404.17	ENSMUST00000103199.9	1161	7	2236	0	0	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	1558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCATTTGTCTTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	130019087	130013554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934
ONT_simulated_read_8365021	chr8	-	440	4	ISM	ENSMUSG00000036534.7	ENSMUST00000212270.2	3315	12	11229	1698	11229	-1698	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCTTCGGCCAGACCACA	NA	NA	NA	NA	NA	NA	NA	NA	96568938	96564249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_96564300_96567041_96567097_96568149_96568350_96568803
ONT_simulated_read_8369888	chr1	+	367	1	ISM	ENSMUSG00000102493.2	ENSMUST00000194128.2	873	2	0	605	0	-604	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTGCAGGAATATGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	177970866	177971233	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_177970900_177971200
ONT_simulated_read_8370988	chr2	+	574	4	ISM	ENSMUSG00000033059.8	ENSMUST00000045441.8	3909	20	0	22945	0	-22945	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCCACCCTGGGTCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	150628654	150650733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_150629031_150643457_150643560_150648112_150648192_150650716
ONT_simulated_read_8375843	chr12	+	1419	11	ISM	ENSMUSG00000020661.16	ENST00000264709.7	6171	23	43209	11631	-42093	-8630	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTCAATGTCACCCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	3899634	3949212	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_3899740_3915984_3916253_3922834_3922879_3923281_3923429_3945542_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192
ONT_simulated_read_8377064	chr10	-	740	1	ISM	ENSMUSG00000020057.3	ENSMUST00000020249.2	2807	7	32311	1221	32162	171	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGGATGGGCTCATCAGG	NA	NA	NA	NA	NA	NA	NA	NA	88160626	88159886	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_88159900_88160600
ONT_simulated_read_8379186	chr13	+	1870	2	ISM	ENSMUSG00000037933.17	ENSMUST00000110085.11	4588	8	41493	351	41493	-344	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGATAACATCATCTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	49536564	49540151	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_49536730_49538446
ONT_simulated_read_8379228	chr2	-	1466	11	ISM	ENSMUSG00000026740.13	ENSMUST00000166495.8	5497	12	75838	3483	75819	-3483	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATCATTTTCCAAACAAG	NA	NA	NA	NA	NA	NA	NA	NA	18321803	18222042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_18222137_18224261_18224711_18227523_18227573_18236514_18236635_18289433_18289598_18298764_18298856_18311783_18311878_18312725_18312824_18313594_18313761_18321168_18321216_18321709
ONT_simulated_read_8380864	chr18	+	343	1	FSM	ENSMUSG00000117621.2	ENSMUST00000234633.2	515	1	0	172	0	-172	mono-exon	FALSE	NA	NA	NA	NA	NA	220	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTGAAATCACTGTTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	47245205	47245548	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_47245200_47245500
ONT_simulated_read_8381815	chr16	-	1059	4	ISM	ENSMUSG00000022498.17	ENSMUST00000038424.14	3095	12	49764	0	49725	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGAATGTCATTTAGCATT	NA	NA	NA	NA	NA	NA	NA	NA	10902750	10892774	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_10893507_10897567_10897649_10902071_10902182_10902614
ONT_simulated_read_838304	chr10	-	1505	12	ISM	ENSMUSG00000074657.6	ENST00000286452.5	3468	26	26107	0	26083	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGTACATACAAAGCCTTAA	NA	NA	NA	NA	NA	NA	NA	NA	127072866	127063880	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_127064291_127065613_127065726_127066017_127066046_127066437_127066506_127066792_127066947_127067160_127067378_127069685_127069791_127069915_127069988_127071485_127071547_127071922_127072025_127072589_127072700_127072800
ONT_simulated_read_838316	chr10	-	2175	1	ISM	ENSMUSG00000039810.12	ENSMUST00000040572.10	3721	3	2577	1060	2577	-1060	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCAAGAGATAGAGGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	128381066	128378891	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128378900_128381100
ONT_simulated_read_8385298	chr5	+	793	1	ISM	ENSMUSG00000038181.17	ENSMUST00000088295.9	5371	5	84	6778	75	-4867	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCAGACTGTTGTTG	NA	NA	NA	NA	NA	NA	NA	NA	24791822	24792615	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_24791800_24792600
ONT_simulated_read_8386811	chr7	-	2771	3	ISM	ENSMUSG00000025139.15	ENSMUST00000001950.12	3788	6	11656	449	11477	-449	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCAAAATTTCTCAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	141444568	141435768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_141438319_141443243_141443335_141444438
ONT_simulated_read_8388923	chr13	-	594	1	ISM	ENSMUSG00000071291.11	ENSMUST00000171518.8	2300	4	8376	1367	8376	-1366	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAAAGCCTTTCACTACCC	NA	NA	NA	NA	NA	NA	NA	NA	67640246	67639652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_67639700_67640200
ONT_simulated_read_8391881	chr9	+	1984	16	ISM	ENSMUSG00000023259.18	ENST00000358747.10	2615	20	63	3459	63	-3459	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGAGGCTAGAGTGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	108732860	108738587	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108733142_108733221_108733362_108733530_108733642_108733874_108734024_108734139_108734305_108734390_108734544_108734864_108734948_108735023_108735172_108735395_108735510_108735629_108735708_108736022_108736119_108736199_108736307_108736485_108736556_108737801_108737895_108737996_108738102_108738496
ONT_simulated_read_8392548	chr11	+	1997	9	NIC	ENSMUSG00000020319.10	novel	2792	18	NA	NA	42958	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAATTTCTTCTCCTGCTT	NA	NA	NA	NA	NA	NA	NA	NA	21645179	21848989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_21645306_21661461_21662072_21671102_21671292_21674512_21674637_21698877_21698942_21763359_21763463_21807446_21807610_21834983_21835088_21848475
ONT_simulated_read_8395584	chr1	-	180	1	ISM	ENSMUSG00000026701.16	ENSMUST00000071718.12	2387	5	9405	1523	9352	-37	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCGTAGAAAGATCGTGGCA	NA	NA	NA	NA	NA	NA	NA	NA	161069384	161069204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_161069200_161069400
ONT_simulated_read_839619	chr7	+	337	2	ISM	ENSMUSG00000011267.9	ENST00000303809.7	1090	3	448	733	448	-733	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCCCCCTCCAGTGAGCA	NA	NA	NA	NA	NA	NA	NA	NA	19311753	19313742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_19311886_19313537
ONT_simulated_read_8399019	chr7	-	971	7	NNC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	1057	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATGTGTGCTGTGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	44776993	44774981	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_44775442_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919
ONT_simulated_read_8401433	chr14	-	1672	13	ISM	ENSMUSG00000037544.15	ENSMUST00000180299.8	4067	17	4338	5506	4338	-5506	internal_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAAGATGCCACTGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	47651296	47631680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102
ONT_simulated_read_8403320	chr7	-	683	7	ISM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	3617	590	2688	-451	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAACGGGAGCGAAAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	45041549	45026466	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502
ONT_simulated_read_840383	chr4	+	836	5	ISM	ENSMUSG00000053510.13	ENSMUST00000106644.9	3784	33	58221	-234	58221	234	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTGTTATAGCACCAAA	NA	NA	NA	NA	NA	NA	NA	NA	108916187	108918592	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
ONT_simulated_read_8404831	chr8	+	1637	8	ISM	ENSMUSG00000037656.10	ENSMUST00000067786.9	3566	11	0	8426	0	-8426	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACAGTGAGAAGCTGGTG	NA	NA	NA	NA	NA	NA	NA	NA	22966803	23051202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_22966942_23025034_23025589_23028819_23028961_23030375_23030462_23035519_23035617_23048957_23049075_23050512_23050717_23050902
ONT_simulated_read_8409112	chr2	+	867	9	NIC	ENSMUSG00000017760.17	novel	2534	15	NA	NA	256	-1451	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACCGCCGCCTCTACCAA	NA	NA	NA	NA	NA	NA	NA	NA	164676229	164680013	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_+_164676352_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996
ONT_simulated_read_8411291	chr2	+	1028	10	ISM	ENSMUSG00000002718.15	ENSMUST00000002790.14	3641	25	21471	6693	12350	-6097	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGCAAAGCTAACCCTG	NA	NA	NA	NA	NA	NA	NA	NA	166769449	166781616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554
ONT_simulated_read_8411678	chr17	-	903	1	FSM	ENSMUSG00000066878.6	ENSMUST00000086423.6	1988	1	0	1085	0	-1085	mono-exon	FALSE	NA	NA	NA	NA	NA	647	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGACTCCTGCACCACAATG	NA	NA	NA	NA	NA	NA	NA	NA	90217877	90216974	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_-_90217000_90217900
ONT_simulated_read_8412483	chr11	+	775	8	ISM	ENSMUSG00000040950.14	ENSMUST00000041550.12	1586	10	0	1032	0	-1030	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGCCTGAAGCTGACAAG	NA	NA	NA	NA	NA	NA	NA	NA	70021154	70027344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_70021269_70024944_70025090_70025877_70025989_70026416_70026513_70026595_70026668_70026746_70026819_70027076_70027164_70027266
ONT_simulated_read_8417672	chr9	-	1197	2	ISM	ENSMUSG00000002028.14	ENST00000389506.10	13573	36	58464	15227	58462	-15227	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTCAAAGTGACACCTCTG	NA	NA	NA	NA	NA	NA	NA	NA	44734130	44732766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44733817_44733983
ONT_simulated_read_8418060	chr3	-	1521	1	NIC	ENSMUSG00000062127.12	novel	4946	6	NA	NA	46822	-2692	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGCCAAGAGCTCAGCGTT	NA	NA	NA	NA	NA	NA	NA	NA	104913445	104911924	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_104911900_104913400
ONT_simulated_read_8420845	chr8	-	435	3	ISM	ENSMUSG00000031453.17	ENSMUST00000117551.4	4404	24	100035	3353	100035	-3353	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAGCAGGAGCACGCACA	NA	NA	NA	NA	NA	NA	NA	NA	13627568	13620300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_13620423_13626336_13626441_13627359
ONT_simulated_read_8422035	chr15	+	430	4	ISM	ENSMUSG00000023048.14	ENSMUST00000023810.12	1224	5	27	2218	0	-2188	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGGCATGTGCCCCGTG	NA	NA	NA	NA	NA	NA	NA	NA	102367636	102369023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_102367691_102367898_102368017_102368542_102368582_102368804
ONT_simulated_read_8422198	chr18	+	2447	1	FSM	ENSMUSG00000046387.6	ENSMUST00000053856.6	4660	1	0	2213	0	-2213	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCATCTGTGTCTTCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	37617847	37620294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_+_37617800_37620300
ONT_simulated_read_8422762	chr6	-	4600	1	ISM	ENSMUSG00000030172.16	ENSMUST00000183703.8	8760	21	272404	351	249480	-343	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACCTAGGCCGGGGATG	NA	NA	NA	NA	NA	NA	NA	NA	119552707	119548107	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_119548100_119552700
ONT_simulated_read_8423795	chr2	+	2765	1	FSM	ENSMUSG00000070461.4	ENSMUST00000189441.2	3352	1	308	279	308	-279	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCTCTCTTCTCTGTACA	NA	NA	NA	NA	NA	NA	NA	NA	180626024	180628789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_180626000_180628800
ONT_simulated_read_8425391	chr11	-	991	1	NIC	ENSMUSG00000020704.14	novel	3436	10	NA	NA	90455	0	mono-exon	FALSE	NA	NA	NA	NA	NA	630	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGCCTTTTCTCTGCGT	NA	NA	NA	NA	NA	NA	NA	NA	80771985	80770994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_80771000_80772000
ONT_simulated_read_8427978	chr11	+	976	7	ISM	ENSMUSG00000078676.10	ENSMUST00000169695.2	3741	14	0	10943	0	-10943	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAATTACTCTCGATCTG	NA	NA	NA	NA	NA	NA	NA	NA	98700633	98713689	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_98700918_98701284_98701313_98701723_98701762_98712256_98712410_98712485_98712638_98713186_98713364_98713545
ONT_simulated_read_8433991	chr1	-	2837	7	ISM	ENSMUSG00000042772.16	ENSMUST00000073441.13	5767	22	57130	764	32676	-763	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTGAAGGACAGCTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	152721243	152713509	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963
ONT_simulated_read_8434228	chr15	-	547	6	ISM	ENSMUSG00000042961.14	ENST00000354891.7	3494	23	84074	5128	15898	-5128	internal_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCATCATGGTGAACGGTT	NA	NA	NA	NA	NA	NA	NA	NA	7263760	7241671	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_7241696_7249105_7249250_7252228_7252308_7254125_7254150_7261068_7261250_7263665
ONT_simulated_read_8435521	chr11	+	541	6	ISM	ENSMUSG00000020333.18	ENST00000651427.1	2589	21	5212	34346	296	-10571	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTGCTGGAACACGTGG	NA	NA	NA	NA	NA	NA	NA	NA	54210977	54217983	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_54211094_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940
ONT_simulated_read_8437786	chr2	-	165	1	ISM	ENSMUSG00000039873.5	ENSMUST00000042775.5	1014	2	2498	62	2498	-62	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGGTCGCACAGCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	164672878	164672713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_164672700_164672900
ONT_simulated_read_8438758	chr18	-	1092	7	ISM	ENSMUSG00000024613.17	ENSMUST00000176630.8	4529	25	20416	2669	20374	-2669	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGCGCCTCCTGGAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	60961627	60949495	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436
ONT_simulated_read_8441524	chr14	-	629	1	ISM	ENSMUSG00000067995.5	ENSMUST00000088922.5	1467	8	113233	67	113233	-67	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCTGTCTGCAGAGGTAA	NA	NA	NA	NA	NA	NA	NA	NA	76135072	76134443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_76134400_76135100
ONT_simulated_read_8442942	chr13	+	1552	4	ISM	ENSMUSG00000039219.19	ENSMUST00000110534.8	5864	24	127385	648	127378	-648	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAAGATGGTTATTATTT	NA	NA	NA	NA	NA	NA	NA	NA	14365761	14373299	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_14365842_14367950_14368167_14369914_14370062_14372190
ONT_simulated_read_8445198	chr7	-	1584	12	ISM	ENSMUSG00000002968.10	ENSMUST00000003049.8	2619	18	7501	0	7153	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	159	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGCTCCCGTGACTGACG	NA	NA	NA	NA	NA	NA	NA	NA	44534635	44528807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44528939_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503
ONT_simulated_read_8448742	chrX	-	1076	1	ISM	ENSMUSG00000052676.17	ENSMUST00000113185.9	3378	6	35167	1571	35167	-1568	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACATAAAAGAAAAAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	133874767	133873691	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_133873700_133874800
ONT_simulated_read_8454282	chr19	-	323	4	ISM	ENSMUSG00000025007.14	ENSMUST00000176939.8	3427	19	10735	20314	10735	-20314	internal_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAGATGATGCAAAGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	40566078	40559014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_40559037_40562214_40562306_40562660_40562814_40566021
ONT_simulated_read_8455119	chr8	-	1942	1	NIC	ENSMUSG00000031951.9	novel	2984	7	NA	NA	19771	-158	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGGCATGATCAGAAGTA	NA	NA	NA	NA	NA	NA	NA	NA	112640742	112638800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_-_112638800_112640700
ONT_simulated_read_8455702	chr2	-	375	4	ISM	ENSMUSG00000027422.16	ENSMUST00000016072.12	5177	24	60739	990	60739	-990	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGAGAAGGACACAGTGA	NA	NA	NA	NA	NA	NA	NA	NA	143792444	143790304	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_143790400_143791189_143791289_143791591_143791676_143792347
ONT_simulated_read_8457066	chr19	+	319	1	Antisense	novelGene_ENSMUSG00000092341.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	205	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTGCTTCCACTAAGATG	NA	NA	NA	NA	NA	NA	NA	NA	5845796	5846115	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr19_+_5845800_5846100
ONT_simulated_read_8459382	chr5	-	2825	5	ISM	ENSMUSG00000029655.18	ENSMUST00000118316.8	8982	6	3099	6045	2	554	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCTACCACCTCTTACTA	NA	NA	NA	NA	NA	NA	NA	NA	150585978	150565481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_150566781_150570465_150570543_150570924_150571014_150574079_150574205_150584743
ONT_simulated_read_8459853	chr15	-	912	8	ISM	ENSMUSG00000018042.19	ENSMUST00000018186.16	2422	9	233	5380	233	-1810	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTGCTCGCTTCAAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	83056560	83043074	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
ONT_simulated_read_8460520	chr15	-	230	1	ISM	ENSMUSG00000022568.18	ENSMUST00000002603.12	5599	38	22226	141	21866	-139	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACCCCTCAGGAGTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	75919377	75919147	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75919100_75919400
ONT_simulated_read_8461473	chr15	+	496	4	ISM	ENSMUSG00000033728.15	ENSMUST00000155735.2	2286	6	0	2064	0	-2008	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCGTGAGCTGGTGCAC	NA	NA	NA	NA	NA	NA	NA	NA	76594930	76597227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76595037_76595163_76595284_76595621_76595731_76597066
ONT_simulated_read_8463326	chr2	+	1155	10	ISM	ENSMUSG00000026812.17	ENST00000403810.6	1707	11	20	709	11	-709	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGATGTTGTTCAGTCCA	NA	NA	NA	NA	NA	NA	NA	NA	28531265	28561810	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_28531332_28542180_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777
ONT_simulated_read_8464011	chr2	-	2099	1	ISM	ENSMUSG00000027184.15	ENSMUST00000028607.13	6169	19	30808	1802	30263	275	mono-exon	FALSE	NA	NA	NA	NA	NA	211	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTGAATTCAGGGAATGT	NA	NA	NA	NA	NA	NA	NA	NA	103597186	103595087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_103595100_103597200
ONT_simulated_read_846413	chr8	-	246	2	ISM	ENSMUSG00000014444.18	ENST00000327397.8	1154	7	281	1140	281	-1140	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTGGGTCCTGTTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	123210134	123209799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_123209969_123210057
ONT_simulated_read_8464934	chr12	-	1397	12	ISM	ENSMUSG00000021027.18	ENST00000443361.1	6205	40	107980	71387	107980	-71387	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGCCTTTCTGATTTGG	NA	NA	NA	NA	NA	NA	NA	NA	55759572	55730819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_55730876_55731271_55731407_55736543_55736613_55740139_55740251_55741931_55742041_55744623_55744683_55745546_55745673_55749219_55749349_55754737_55754894_55755778_55755878_55756298_55756493_55759418
ONT_simulated_read_8465170	chr2	+	508	6	ISM	ENSMUSG00000026648.19	ENST00000378249.5	1710	10	3842	856	3842	-856	internal_fragment	FALSE	canonical	NA	NA	NA	NA	163	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCACTAGACCAGCCTGA	NA	NA	NA	NA	NA	NA	NA	NA	3441865	3453985	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_3441897_3444690_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3453884
ONT_simulated_read_8467404	chr18	-	1651	13	ISM	ENSMUSG00000024566.11	ENSMUST00000225980.2	5150	29	125291	18677	109113	-17052	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGAACAGCTACAAACGGTC	NA	NA	NA	NA	NA	NA	NA	NA	80851982	80796281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_80796363_80797163_80797229_80797459_80797605_80799668_80799759_80801509_80801609_80805276_80805448_80806088_80806173_80808237_80808331_80808985_80809148_80820012_80820262_80822077_80822191_80838504_80838648_80851826
ONT_simulated_read_8468361	chr13	+	4450	10	ISM	ENSMUSG00000039087.18	ENST00000349384.10	7285	11	-13	3827	0	-2890	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGCGATACCTGTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	38072846	38131208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533_38116466_38130832
ONT_simulated_read_8468760	chr11	+	888	1	ISM	ENSMUSG00000020492.12	ENSMUST00000020794.6	3037	4	12927	1587	12927	-1587	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACATGCATGCTTATGATA	NA	NA	NA	NA	NA	NA	NA	NA	87012986	87013874	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_87013000_87013900
ONT_simulated_read_8469973	chr1	-	392	5	ISM	ENSMUSG00000040843.11	ENSMUST00000043235.8	4380	7	9367	3566	9367	-3566	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATGAAATATCACAATATT	NA	NA	NA	NA	NA	NA	NA	NA	165055145	165043420	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_165043450_165045351_165045415_165047667_165047764_165050097_165050230_165055073
ONT_simulated_read_8470943	chr8	-	1648	5	ISM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	5907	88	5907	-88	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	2101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTTCTGGTTTTCATGAA	NA	NA	NA	NA	NA	NA	NA	NA	65180919	65171260	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657
ONT_simulated_read_847329	chr4	-	887	3	ISM	ENSMUSG00000028540.7	ENSMUST00000030265.4	2555	6	610	1504	610	-1504	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCCAGCCTTCGGGTGGC	NA	NA	NA	NA	NA	NA	NA	NA	117748619	117747343	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_117747899_117748091_117748316_117748511
ONT_simulated_read_8474880	chr2	-	1476	1	NIC	ENSMUSG00000056941.18	novel	3210	9	NA	NA	13227	796	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTGGTTTTCATGGTA	NA	NA	NA	NA	NA	NA	NA	NA	153461433	153459957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_153460000_153461400
ONT_simulated_read_8475356	chr1	-	1669	8	ISM	ENSMUSG00000025920.20	ENSMUST00000149320.9	2214	13	78884	-338	78788	338	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAGACATTTGGTGTTAG	NA	NA	NA	NA	NA	NA	NA	NA	16510647	16415479	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546
ONT_simulated_read_8476600	chr2	-	1348	8	ISM	ENSMUSG00000026851.10	ENSMUST00000028205.10	1984	9	398	473	398	-473	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATTATAAATGGTTCTGA	NA	NA	NA	NA	NA	NA	NA	NA	30871555	30862661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_30863314_30863703_30863803_30863912_30864050_30865902_30866101_30867903_30867982_30868906_30868978_30870010_30870063_30871494
ONT_simulated_read_8478622	chr9	+	1154	9	ISM	ENSMUSG00000002820.7	ENSMUST00000065005.5	5951	10	231	4909	231	-4909	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGAACAGGAAGGAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	21176819	21184159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179824_21179900_21179966_21182015_21182147_21183763_21183843_21183931_21184009_21184086
ONT_simulated_read_8478647	chr12	+	520	6	FSM	ENSMUSG00000020994.6	ENST00000553331.5	660	6	41	99	41	-99	multi-exon	FALSE	canonical	NA	NA	NA	NA	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAGGTTGAAAACGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	59113728	59116984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115901_59115978_59116927
ONT_simulated_read_8478904	chr10	-	999	1	ISM	ENSMUSG00000001119.8	ENSMUST00000001147.5	4100	35	15987	391	15987	-391	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTCAGCTTGCTGGATTA	NA	NA	NA	NA	NA	NA	NA	NA	76546015	76545016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_76545000_76546000
ONT_simulated_read_8479328	chr4	-	1578	12	NNC	ENSMUSG00000028906.18	novel	3870	15	NA	NA	3637	-800	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACGCGGCTGCTGTGACT	NA	NA	NA	NA	NA	NA	NA	NA	131731105	131682838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr4_-_131682890_131684953_131685131_131695098_131695284_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895
ONT_simulated_read_8483801	chr10	-	749	7	ISM	ENSMUSG00000019961.18	ENST00000575258.1	1183	9	6961	208	6961	-208	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCATCTAAGTACGTCC	NA	NA	NA	NA	NA	NA	NA	NA	91000064	90985545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_90985621_90987570_90987660_90988489_90988601_90988946_90989043_90989139_90989260_90994609_90994708_90999904
ONT_simulated_read_8485023	chr2	-	342	3	ISM	ENSMUSG00000010914.11	ENSMUST00000011058.9	2506	11	40212	7216	40161	-7216	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGACTCTGTAAAGGTATG	NA	NA	NA	NA	NA	NA	NA	NA	102863646	102858635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_102858780_102860622_102860682_102863507
ONT_simulated_read_848594	chr8	+	109	2	ISM	ENSMUSG00000004567.17	ENSMUST00000004683.13	2065	14	10210	4333	10210	-4333	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCACAAGTACAACGTGA	NA	NA	NA	NA	NA	NA	NA	NA	3560666	3560899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_3560690_3560813
ONT_simulated_read_8486767	chr11	-	563	4	ISM	ENSMUSG00000020415.17	ENST00000352433.10	664	5	782	0	782	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCATATGTTCAGATTGT	NA	NA	NA	NA	NA	NA	NA	NA	43315724	43311104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545
ONT_simulated_read_8490562	chr10	+	1415	11	ISM	ENSMUSG00000019823.18	ENST00000358807.8	3242	23	454	3405	454	-3405	internal_fragment	FALSE	canonical	NA	NA	NA	NA	119	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAACATGAGCTAGGCATC	NA	NA	NA	NA	NA	NA	NA	NA	41354473	41359498	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436
ONT_simulated_read_8494729	chr9	-	2302	1	ISM	ENSMUSG00000032258.16	ENSMUST00000034791.15	4160	8	44977	330	44977	-330	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATTATGTAATGTTAATT	NA	NA	NA	NA	NA	NA	NA	NA	83278103	83275801	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_83275800_83278100
ONT_simulated_read_8495504	chr10	-	648	5	NNC	ENSMUSG00000019822.13	novel	1602	10	NA	NA	1825	-242	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTGGCCATCATCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	41364511	41363409	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364424
ONT_simulated_read_849582	chrX	-	1608	9	FSM	ENSMUSG00000031150.14	ENST00000496529.6	2131	9	30	493	30	-493	multi-exon	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGCTCCCAGGTCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	7604729	7599847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_7600338_7601310_7601410_7601539_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400_7604492_7604600
ONT_simulated_read_8499584	chr18	-	1353	12	ISM	ENSMUSG00000038524.14	ENST00000435817.7	4121	20	1879	5381	1845	-3875	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGCCATGGCATCGACA	NA	NA	NA	NA	NA	NA	NA	NA	38100942	38096016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_38096091_38096180_38096265_38096345_38096475_38097060_38097223_38097366_38097472_38097843_38097964_38098703_38098800_38098951_38099075_38099493_38099623_38100415_38100480_38100590_38100728_38100812
ONT_simulated_read_8500107	chr11	-	691	4	ISM	ENSMUSG00000020457.14	ENSMUST00000020741.12	1546	9	11751	190	11751	-190	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	273	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCAGGCTGGCTTTGAAC	NA	NA	NA	NA	NA	NA	NA	NA	3204642	3200096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_3200366_3202159_3202283_3202643_3202812_3204511
ONT_simulated_read_850102	chr2	-	728	1	NIC	ENSMUSG00000046110.16	novel	2240	10	NA	NA	3376	-1413	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	658	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAGAGCCCTCAAGAGCC	NA	NA	NA	NA	NA	NA	NA	NA	121283798	121283070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_121283100_121283800
ONT_simulated_read_85016	chr15	-	435	2	ISM	ENSMUSG00000052560.16	ENSMUST00000014777.9	697	4	30764	0	30764	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGATTCTGGTTGTTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	90532827	90527528	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_90527917_90532780
ONT_simulated_read_8501987	chr8	-	487	2	ISM	ENSMUSG00000060427.16	ENSMUST00000074982.7	1269	4	-320	2333	-320	-2333	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGACTAGCCATGCCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	70072323	70066397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70066526_70071964
ONT_simulated_read_8502141	chr12	-	192	1	ISM	ENSMUSG00000079017.4	ENSMUST00000055071.9	463	4	1322	0	1322	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTGTGGTGGCTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	103408617	103408425	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_103408400_103408600
ONT_simulated_read_8504511	chr18	+	1894	11	ISM	ENSMUSG00000037236.17	ENSMUST00000237744.2	2845	15	9474	5931	9474	-5931	internal_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGGAAAAGAATCTCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	35704979	35717586	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567
ONT_simulated_read_8504941	chr2	-	723	5	ISM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	1428	2201	1428	-2201	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTTACTCTGGAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	25254266	25252101	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25252150_25252674_25252861_25253255_25253397_25253817_25254012_25254112
ONT_simulated_read_8506210	chr3	+	1228	1	ISM	ENSMUSG00000046561.10	ENSMUST00000093976.4	3859	2	0	75464	0	-75464	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCAGGACTTAGAAGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	126157332	126158560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_126157300_126158600
ONT_simulated_read_8507741	chr2	-	204	1	ISM	ENSMUSG00000026896.15	ENSMUST00000028259.12	5470	16	48152	2058	47905	0	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTGTTGTTTTCGCTAC	NA	NA	NA	NA	NA	NA	NA	NA	62428403	62428199	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_62428200_62428400
ONT_simulated_read_8513056	chr1	-	823	1	ISM	ENSMUSG00000089872.11	ENSMUST00000061611.15	3995	15	138069	0	138068	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCCTTCCTCATTTAATA	NA	NA	NA	NA	NA	NA	NA	NA	190505898	190505075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_190505100_190505900
ONT_simulated_read_8514378	chr7	-	180	1	FSM	ENSMUSG00000044814.7	ENSMUST00000061482.6	1130	1	0	950	0	-794	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATTCATACAGTGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	102127109	102126929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_102126900_102127100
ONT_simulated_read_8516154	chr17	-	1477	1	ISM	ENSMUSG00000012296.17	ENSMUST00000180283.2	2368	9	23543	156	4304	-130	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCCAGAGGGAGGGCGT	NA	NA	NA	NA	NA	NA	NA	NA	46570409	46568932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_46568900_46570400
ONT_simulated_read_851681	chr8	-	252	3	ISM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	6300	5665	6300	-5665	internal_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCCCAGCAACATAAAGCAG	NA	NA	NA	NA	NA	NA	NA	NA	108145381	108144785	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_108144859_108144945_108145075_108145331
ONT_simulated_read_8517974	chr4	+	1182	11	ISM	ENSMUSG00000039768.17	ENST00000294401.11	2140	15	23509	1178	23452	-1178	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTAACTGCCTCTCGCT	NA	NA	NA	NA	NA	NA	NA	NA	152041599	152064504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152062455_152062526_152063728_152063787_152063900_152064044_152064374
ONT_simulated_read_8519532	chr19	+	5445	6	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	44282112	44295303	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289660_44289884_44291439
ONT_simulated_read_8519627	chr5	-	808	4	ISM	ENSMUSG00000040464.16	ENSMUST00000088842.11	941	8	15332	-261	15325	261	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTAAGAGATGTTGGTCAA	NA	NA	NA	NA	NA	NA	NA	NA	5594191	5588971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065
ONT_simulated_read_8519992	chr11	-	774	6	ISM	ENSMUSG00000020451.18	ENST00000422830.1	1390	11	26	4979	26	-4979	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTCAAGTTCATCGGAGT	NA	NA	NA	NA	NA	NA	NA	NA	3308273	3300740	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109
ONT_simulated_read_8520287	chr17	+	2380	15	ISM	ENSMUSG00000001870.17	ENSMUST00000112514.2	4870	30	131245	444	131245	-444	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTTTTAAATATTAGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	75617150	75697877	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_75617274_75619970_75620094_75621997_75622121_75627965_75628089_75634191_75634318_75655738_75655865_75659681_75659826_75666284_75666465_75667706_75667794_75669504_75669634_75670332_75670474_75671333_75671505_75692067_75692191_75696424_75696575_75697366
ONT_simulated_read_8520961	chr13	-	1558	16	ISM	ENSMUSG00000021585.11	ENSMUST00000220738.2	1653	17	2094	-164	2064	-159	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAATGCTCCCAACTTTT	NA	NA	NA	NA	NA	NA	NA	NA	74880286	74842565	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852322_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212
ONT_simulated_read_8522529	chr17	-	216	1	ISM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	6948	1586	6174	152	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTATCTTGGTGTTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	47086634	47086418	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_47086400_47086600
ONT_simulated_read_8522697	chr18	+	349	1	ISM	ENSMUSG00000054477.17	ENSMUST00000183850.8	3546	11	290806	125724	105	-125403	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGCAGGTACAACGGGGG	NA	NA	NA	NA	NA	NA	NA	NA	45692877	45693226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_45692900_45693200
ONT_simulated_read_852432	chr10	+	1175	1	ISM	ENSMUSG00000047669.9	ENSMUST00000063138.8	2140	2	7998	791	7998	-791	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATTTACTGCGACTGTT	NA	NA	NA	NA	NA	NA	NA	NA	55991010	55992185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_55991000_55992200
ONT_simulated_read_8525613	chr7	-	1280	1	ISM	ENSMUSG00000037029.9	ENSMUST00000062181.9	2029	2	6519	660	6519	-660	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGAGGAGCCATACGGG	NA	NA	NA	NA	NA	NA	NA	NA	29862633	29861353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_29861400_29862600
ONT_simulated_read_8525788	chr10	-	1338	6	ISM	ENSMUSG00000020063.17	ENST00000432464.5	3173	7	5214	1703	-40	-1647	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTTAATGAAGCTATAGC	NA	NA	NA	NA	NA	NA	NA	NA	63167634	63156483	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_63156744_63157527_63158080_63159745_63159933_63160904_63160985_63161817_63161966_63167523
ONT_simulated_read_8531154	chr8	-	345	3	ISM	ENSMUSG00000002885.15	ENSMUST00000109802.3	2867	19	7617	6107	7613	-6107	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACCGTAGGCTCCTACA	NA	NA	NA	NA	NA	NA	NA	NA	84460185	84456099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_84456155_84456739_84456887_84460042
ONT_simulated_read_8532721	chr9	-	1133	1	ISM	ENSMUSG00000031931.5	ENSMUST00000216372.2	2679	3	3282	824	1390	-233	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCCCTCTGAAGTGTTCA	NA	NA	NA	NA	NA	NA	NA	NA	14692870	14691737	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_14691700_14692900
ONT_simulated_read_8533140	chr2	+	191	1	ISM	ENSMUSG00000018326.10	ENSMUST00000018470.10	3013	6	0	23438	0	-23438	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGGTGGCCAGAGCGGAA	NA	NA	NA	NA	NA	NA	NA	NA	163836879	163837070	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_163836900_163837100
ONT_simulated_read_853461	chr8	+	935	8	ISM	ENSMUSG00000031634.14	ENSMUST00000034051.7	1640	12	22	5145	22	-5145	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCTGTGCTTATAGGTC	NA	NA	NA	NA	NA	NA	NA	NA	46428586	46444850	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_46428626_46432245_46432333_46433351_46433530_46433609_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784
ONT_simulated_read_8536687	chr13	-	1353	6	ISM	ENSMUSG00000032745.19	ENSMUST00000091236.11	3299	12	49211	153	49063	-153	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	114	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAACTGTGGAAATCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	111577351	111562618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165
ONT_simulated_read_8539015	chr9	-	763	1	NIC	ENSMUSG00000051234.7	novel	1232	3	NA	NA	6757	-154	mono-exon	FALSE	NA	NA	NA	NA	NA	497	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTCAAAATATTAGTAGGAAA	NA	NA	NA	NA	NA	NA	NA	NA	96353906	96353143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_96353100_96353900
ONT_simulated_read_8539707	chr17	-	143	1	ISM	ENSMUSG00000041168.11	ENSMUST00000047226.10	2951	18	12354	94	12076	0	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGACACAGGGGCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	56921533	56921390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_56921400_56921500
ONT_simulated_read_8543341	chr8	-	766	5	ISM	ENSMUSG00000031781.15	ENSMUST00000034233.15	1807	9	4	5837	4	-5822	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAGCACCTGGGCTACCA	NA	NA	NA	NA	NA	NA	NA	NA	95564889	95555025	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564581
ONT_simulated_read_8543740	chr19	+	694	3	ISM	ENSMUSG00000025213.12	ENSMUST00000111948.8	1625	6	0	2275	0	-2275	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTCGAGTGCAGGCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	45063679	45065453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_45063958_45064633_45064676_45065079
ONT_simulated_read_85472	chr9	-	271	2	ISM	ENSMUSG00000025786.18	ENST00000506315.1	960	6	20087	20	20087	-20	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACCAGTATGTGGTCTGAA	NA	NA	NA	NA	NA	NA	NA	NA	122909546	122907246	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_122907387_122909415
ONT_simulated_read_8547208	chr2	+	971	10	ISM	ENSMUSG00000027411.18	ENSMUST00000028900.11	3161	24	15957	1806	15957	-1199	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAGCAGCTGGCACGTGA	NA	NA	NA	NA	NA	NA	NA	NA	130282241	130284383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_130282283_130282371_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254
ONT_simulated_read_8547789	chr7	+	1257	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	0	-25	0	25	mono-exon	FALSE	NA	NA	NA	NA	NA	13866	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGGCTCAGTAGTTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	51396394	51397651	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_51396400_51397700
ONT_simulated_read_8548379	chr13	-	1045	1	ISM	ENSMUSG00000072066.8	ENSMUST00000201563.4	2640	3	18822	1303	2139	-61	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCCTTTTCACGACACA	NA	NA	NA	NA	NA	NA	NA	NA	62753174	62752129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_62752100_62753200
ONT_simulated_read_8548975	chr13	-	2439	2	ISM	ENSMUSG00000069206.15	ENSMUST00000075255.6	3238	4	2707	560	2666	-560	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAACCAATCACTATAGAA	NA	NA	NA	NA	NA	NA	NA	NA	67597036	67589111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_67591454_67596939
ONT_simulated_read_8553252	chr17	-	1022	5	ISM	ENSMUSG00000004865.17	ENSMUST00000130643.9	4653	16	23709	1942	23451	-1942	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGTTTCTATGCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	28817974	28808563	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875
ONT_simulated_read_8553458	chr2	+	652	5	ISM	ENSMUSG00000027203.16	ENSMUST00000082122.14	1020	7	292	654	0	-654	internal_fragment	TRUE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATCTGTGAGCGGATTT	NA	NA	NA	NA	NA	NA	NA	NA	125089401	125099014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989
ONT_simulated_read_8554051	chr13	+	776	6	ISM	ENSMUSG00000021476.10	ENSMUST00000021929.10	2564	8	12231	1122	12188	-502	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCCGTGTCGTGTGAAG	NA	NA	NA	NA	NA	NA	NA	NA	64321913	64333229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_64322036_64322603_64322673_64323818_64323903_64329920_64330093_64332386_64332573_64333086
ONT_simulated_read_8554139	chr14	-	609	1	ISM	ENSMUSG00000022199.13	ENSMUST00000050772.10	2294	9	5773	24	5739	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCATATCATAGCCTGGA	NA	NA	NA	NA	NA	NA	NA	NA	55144816	55144207	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55144200_55144800
ONT_simulated_read_8555525	chr17	+	527	4	ISM	ENSMUSG00000024201.13	ENSMUST00000086835.12	4360	22	0	49288	0	-49288	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGGAAGAACCTGACCTTT	NA	NA	NA	NA	NA	NA	NA	NA	56633090	56660571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_56633230_56658632_56658798_56659975_56660152_56660524
ONT_simulated_read_855999	chr3	+	495	1	FSM	ENSMUSG00000060438.6	ENSMUST00000074353.6	495	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	525	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGTTGGAGTTTATGTTG	NA	NA	NA	NA	NA	NA	NA	NA	95529588	95530083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_95529600_95530100
ONT_simulated_read_8560178	chr7	+	435	4	NNC	ENSMUSG00000004610.5	novel	893	6	NA	NA	8807	-77	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGGGGCGGATCTGAGAC	NA	NA	NA	NA	NA	NA	NA	NA	43102313	43107147	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_43102382_43103941_43104005_43105902_43106062_43107002
ONT_simulated_read_8561359	chr15	-	2931	8	ISM	ENSMUSG00000022479.16	ENSMUST00000023119.15	4370	10	23401	1255	23401	-1255	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACCTGGCCCTATGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	97782790	97753560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_97755513_97756669_97756787_97756978_97757131_97764997_97765170_97767198_97767305_97767526_97767712_97774604_97774736_97782674
ONT_simulated_read_8562600	chr3	-	440	1	FSM	ENSMUSG00000094392.2	ENSMUST00000119949.3	136	1	0	-304	0	304	mono-exon	FALSE	NA	NA	NA	NA	NA	706	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACACCACAAGTGACCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	86579475	86579035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_86579000_86579500
ONT_simulated_read_8563595	chr16	-	908	6	ISM	ENSMUSG00000012114.18	ENSMUST00000232236.2	3404	18	49550	3987	49429	-3224	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTGTCCAAGTACATCGA	NA	NA	NA	NA	NA	NA	NA	NA	17491261	17473071	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17473146_17473307_17473436_17473541_17473670_17481240_17481361_17489408_17489538_17490932
ONT_simulated_read_8563682	chr12	+	766	4	ISM	ENSMUSG00000021288.20	ENSMUST00000118471.8	2272	14	-107	18895	0	-18893	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTAGCAAGGATGTGAC	NA	NA	NA	NA	NA	NA	NA	NA	111725282	111742436	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357
ONT_simulated_read_856557	chr8	-	1384	2	FSM	ENSMUSG00000063253.12	ENST00000506597.2	1575	2	1	190	1	-179	multi-exon	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGGCTCTTAGGCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	84164651	84161323	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_84162670_84164613
ONT_simulated_read_8566600	chr6	-	737	1	ISM	ENSMUSG00000038507.7	ENSMUST00000038398.7	3231	12	30744	459	30744	-459	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTATTTTTAACTCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	39064539	39063802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_39063800_39064500
ONT_simulated_read_8575060	chr2	-	494	1	ISM	ENSMUSG00000006800.15	ENSMUST00000109249.9	4580	21	80867	1214	80489	-383	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTGACCTGGCTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	165916716	165916222	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_165916200_165916700
ONT_simulated_read_857575	chr11	-	559	4	ISM	ENSMUSG00000020282.19	ENSMUST00000020524.15	2946	18	6251	4701	-1614	-4479	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTTTACGAAGGGGACAG	NA	NA	NA	NA	NA	NA	NA	NA	32166049	32164285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_32164305_32164392_32164603_32164909_32165124_32165933
ONT_simulated_read_8575791	chr8	-	2756	1	ISM	ENSMUSG00000051495.9	ENSMUST00000054960.9	5080	2	2165	770	2165	-770	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGGTCTCCAAAAAAACC	NA	NA	NA	NA	NA	NA	NA	NA	127318560	127315804	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_127315800_127318600
ONT_simulated_read_8577447	chr16	+	1140	8	ISM	ENSMUSG00000022761.13	ENSMUST00000231292.2	2491	20	13685	-187	13685	187	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTCTCTGTCAGGAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	17340551	17343853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102_17343209_17343286_17343368_17343540
ONT_simulated_read_8577536	chr10	-	1669	1	ISM	ENSMUSG00000037855.16	ENSMUST00000064656.8	4259	5	23602	1289	23602	-1289	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGTGTTTGTGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	67724890	67723221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_67723200_67724900
ONT_simulated_read_8581601	chr13	+	985	10	ISM	ENSMUSG00000021699.18	ENST00000405755.6	2306	15	78	13481	78	-13356	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAATCCCAGTAGACACT	NA	NA	NA	NA	NA	NA	NA	NA	109769313	110074522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_109769445_109876920_109877113_109894110_109894148_109906067_109906142_109909164_109909215_110040110_110040224_110070401_110070496_110071839_110072013_110073210_110073310_110074500
ONT_simulated_read_8582391	chr12	-	562	1	ISM	ENSMUSG00000021186.10	ENSMUST00000021603.9	5829	11	68179	3750	67592	-378	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGAAATGCTGGGAATAG	NA	NA	NA	NA	NA	NA	NA	NA	101717135	101716573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_101716600_101717100
ONT_simulated_read_8584213	chr16	-	4448	24	ISM	ENSMUSG00000022914.18	ENSMUST00000099502.9	8547	42	35897	10542	35897	-3363	internal_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGAAGAGGAGGAGAATGC	NA	NA	NA	NA	NA	NA	NA	NA	95847731	95803833	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_95804555_95809919_95810769_95811019_95811188_95812909_95813137_95814908_95815076_95817307_95817461_95818780_95818925_95820618_95820661_95820878_95820955_95822415_95822542_95824602_95824724_95824920_95825077_95828544_95828607_95829376_95829489_95831834_95831918_95832726_95832852_95834784_95834893_95834967_95835094_95837061_95837252_95839090_95839186_95842451_95842584_95844200_95844295_95845663_95845848_95847544
ONT_simulated_read_8585074	chr13	-	1077	11	ISM	ENSMUSG00000021646.10	ENSMUST00000022148.7	2123	17	25263	5632	25263	-5632	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGACCAGAAAGCACGCGAG	NA	NA	NA	NA	NA	NA	NA	NA	100126884	100090672	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_100090759_100091122_100091280_100095312_100095380_100097407_100097485_100100315_100100389_100104148_100104245_100104341_100104442_100108286_100108352_100112916_100113031_100125043_100125157_100126755
ONT_simulated_read_8585797	chr5	-	1668	9	ISM	ENSMUSG00000029111.8	ENSMUST00000030993.8	2580	11	15785	327	15785	-327	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTGGGTTCTTATT	NA	NA	NA	NA	NA	NA	NA	NA	34077972	34055586	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835
ONT_simulated_read_8585878	chr6	+	847	1	FSM	ENSMUSG00000071237.5	ENSMUST00000120444.2	501	1	0	-346	0	346	mono-exon	FALSE	NA	NA	NA	NA	NA	288	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGATATTAAAGTAAAAATC	NA	NA	NA	NA	NA	NA	NA	NA	117785680	117786527	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_+_117785700_117786500
ONT_simulated_read_8586109	chr13	-	468	3	ISM	ENSMUSG00000021635.15	ENSMUST00000022136.14	2839	17	49	27899	45	-27584	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTCTAGAAACTTCAAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	100787510	100781570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_100781754_100786185_100786290_100787329
ONT_simulated_read_8586848	chr7	-	965	7	ISM	ENSMUSG00000002980.15	ENSMUST00000003061.14	2429	15	3503	4171	3503	-4171	internal_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACCAAGGTGACTGGAGGA	NA	NA	NA	NA	NA	NA	NA	NA	19500969	19494226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_19494338_19497964_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760
ONT_simulated_read_8588585	chrX	-	409	4	ISM	ENSMUSG00000031255.15	ENST00000276141.10	3523	16	11903	11430	11903	-250	internal_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGCAGAAACACTTTCCT	NA	NA	NA	NA	NA	NA	NA	NA	132851081	132848581	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_132848648_132849439_132849543_132849795_132849975_132851020
ONT_simulated_read_8590103	chr14	+	1115	12	NIC	ENSMUSG00000021843.18	novel	1451	12	NA	NA	80	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGACACCTTCAGAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	47952133	47973736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr14_+_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971724_47973556
ONT_simulated_read_8594303	chr5	-	833	6	ISM	ENSMUSG00000004642.14	ENSMUST00000101354.10	1578	7	253	607	247	-607	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTTAGGCATGTTTTAA	NA	NA	NA	NA	NA	NA	NA	NA	33809397	33798005	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33807086_33807192_33809306
ONT_simulated_read_8595353	chr15	-	348	2	ISM	ENSMUSG00000022205.16	ENSMUST00000110504.2	675	5	10437	0	9512	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGAGGATTGCTTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	11986632	11984126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_11984384_11986541
ONT_simulated_read_859635	chr7	-	1059	8	ISM	ENSMUSG00000038502.18	ENSMUST00000046575.17	1883	12	2870	108	2712	-102	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTCCTGGCGACTGTACC	NA	NA	NA	NA	NA	NA	NA	NA	44516342	44512599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44512869_44512958_44513157_44513806_44513912_44514035_44514094_44514185_44514260_44514336_44514427_44514895_44515052_44516233
ONT_simulated_read_859727	chrX	+	1739	5	NIC	ENSMUSG00000015217.12	novel	1743	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	70599533	70604282	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chrX_+_70599797_70601662_70601814_70602038_70602179_70602703_70602879_70603272
ONT_simulated_read_859915	chr19	-	530	3	ISM	ENSMUSG00000061742.13	ENST00000473690.5	1340	8	4795	0	4795	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	360	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGGAGCCGCCTGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	6587883	6586765	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6586971_6587146_6587256_6587667
ONT_simulated_read_8599505	chr17	+	337	1	Antisense	novelGene_ENSMUSG00000040680.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	810	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGACTCGGGCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	23960897	23961234	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr17_+_23960900_23961200
ONT_simulated_read_8599885	chr19	-	293	1	ISM	ENSMUSG00000024833.16	ENSMUST00000025752.15	2421	18	23206	162	23206	-162	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCGTGGCTCTGATCTGA	NA	NA	NA	NA	NA	NA	NA	NA	5991024	5990731	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5990700_5991000
ONT_simulated_read_8603675	chr14	-	1078	1	ISM	ENSMUSG00000025277.15	ENSMUST00000166497.9	2226	9	52608	176	52591	-78	mono-exon	FALSE	NA	NA	NA	NA	NA	205	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCAGCTCATGGGCATC	NA	NA	NA	NA	NA	NA	NA	NA	14414263	14413185	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_14413200_14414300
ONT_simulated_read_860467	chr4	+	1514	9	ISM	ENSMUSG00000006386.16	ENST00000519097.5	3759	21	65637	20951	65325	-20951	internal_fragment	TRUE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATTTATCCTGTGCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	94693079	94741680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_94693191_94708320_94708473_94715492_94715638_94715906_94716063_94718120_94718256_94725353_94725642_94737857_94738158_94739959_94740112_94741605
ONT_simulated_read_8605498	chr11	-	270	1	ISM	ENSMUSG00000001034.18	ENSMUST00000101085.9	3254	6	5004	181	5004	-181	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACCCACCTTTCAGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	61380088	61379818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_61379800_61380100
ONT_simulated_read_8606085	chr2	-	505	1	ISM	ENSMUSG00000014355.11	ENSMUST00000014499.10	8942	48	74366	2417	73036	-2417	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTCTGTGCTTCCCGT	NA	NA	NA	NA	NA	NA	NA	NA	128454945	128454440	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_128454400_128454900
ONT_simulated_read_8608363	chr4	-	625	1	ISM	ENSMUSG00000066324.3	ENSMUST00000084949.3	6543	5	25415	4832	25415	-4832	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAGAATGGGATTTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	4767940	4767315	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_4767300_4767900
ONT_simulated_read_8609680	chr11	-	716	6	ISM	ENSMUSG00000020451.18	ENSMUST00000110029.9	2939	12	5692	1426	5692	80	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCTTGCTGTGAGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	3300449	3295681	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391
ONT_simulated_read_8609709	chr4	-	1198	3	ISM	ENSMUSG00000042446.17	ENSMUST00000106108.9	7102	30	99169	1561	99169	-1561	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCATTTAGGGTCTTGCC	NA	NA	NA	NA	NA	NA	NA	NA	126762759	126757292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126758111_126759289_126759420_126762509
ONT_simulated_read_8612563	chr10	-	2310	6	ISM	ENSMUSG00000036112.16	ENST00000261220.13	1817	10	19412	-1039	19412	1039	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATCCTTGTGTCCTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	93706161	93695749	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978
ONT_simulated_read_8615428	chr17	-	1147	11	ISM	ENSMUSG00000024039.16	ENSMUST00000078509.12	2403	16	9583	4485	9583	-4485	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTCTCCCTCCCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	31846556	31836099	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449
ONT_simulated_read_8615935	chr4	-	808	7	ISM	ENSMUSG00000028684.15	ENST00000636836.1	1076	8	221	164	221	-164	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGGCATGGGCTTTACCC	NA	NA	NA	NA	NA	NA	NA	NA	116850664	116847579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_116847646_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850221_116850444_116850508_116850584
ONT_simulated_read_8621717	chr8	-	655	3	ISM	ENSMUSG00000022322.9	ENSMUST00000022945.9	2156	13	39879	0	39879	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTGAAATGTGGATT	NA	NA	NA	NA	NA	NA	NA	NA	4789675	4785975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_4786408_4789124_4789267_4789594
ONT_simulated_read_8623283	chr9	+	587	4	ISM	ENSMUSG00000032002.11	ENSMUST00000034499.10	1122	7	0	17787	0	-17758	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGAACATTTTTTTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	7184550	7189253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_7184883_7186767_7186860_7188745_7188817_7189161
ONT_simulated_read_8624449	chr5	-	2162	1	Genic_Genomic	ENSMUSG00000001467.6	novel	NA	NA	NA	NA	21442	2	mono-exon	FALSE	NA	NA	NA	NA	NA	424	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATTTTCTTTGCCAATGT	NA	NA	NA	NA	NA	NA	NA	NA	4133304	4131142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr5_-_4131100_4133300
ONT_simulated_read_8624620	chr12	-	1971	17	NNC	ENSMUSG00000011158.9	novel	2615	18	NA	NA	7559	-115	at_least_one_novel_splicesite	FALSE	non_canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCCCCACTTATTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	112956765	112923819	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr12_-_112923979_112924729_112924902_112925342_112925395_112925995_112926253_112926996_112927053_112927129_112927212_112927803_112927866_112929348_112929613_112932884_112932978_112933061_112933102_112933716_112933844_112935881_112935976_112937091_112937242_112943304_112943378_112946646_112946679_112951536_112951713_112956683
ONT_simulated_read_8624999	chr4	-	309	1	ISM	ENSMUSG00000028840.11	ENSMUST00000030644.8	1994	3	1896	99	1896	-99	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTGTGGGCTTGAGGGT	NA	NA	NA	NA	NA	NA	NA	NA	133971007	133970698	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_133970700_133971000
ONT_simulated_read_8625363	chr2	-	319	3	ISM	ENSMUSG00000027165.17	ENSMUST00000090513.11	969	7	10402	23152	10402	-23050	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGATATGACCCGGGCT	NA	NA	NA	NA	NA	NA	NA	NA	101440989	101415620	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_101415661_101416656_101416815_101440868
ONT_simulated_read_8627471	chr3	-	259	1	ISM	ENSMUSG00000028029.12	ENST00000442366.6	882	5	16394	0	16394	0	mono-exon	FALSE	NA	NA	NA	NA	NA	485	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTTTTTGATTCGTCT	NA	NA	NA	NA	NA	NA	NA	NA	132366500	132366241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_132366200_132366500
ONT_simulated_read_8627622	chr1	-	950	4	ISM	ENSMUSG00000002459.18	ENSMUST00000119256.8	883	5	94745	-226	94745	226	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTACTAGTCTCTGTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	4994213	4980398	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_4980886_4982536_4982772_4987119_4987204_4994069
ONT_simulated_read_8628114	chr2	-	2076	11	ISM	ENSMUSG00000026816.15	ENSMUST00000113889.9	2667	12	3477	201	3233	-201	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTCTGAGTGAGGGCCCCG	NA	NA	NA	NA	NA	NA	NA	NA	28469724	28456523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_28457190_28457619_28457815_28458496_28458640_28459303_28459387_28460430_28460529_28460624_28460706_28461124_28461240_28462207_28462313_28463388_28463585_28467887_28468087_28469529
ONT_simulated_read_862979	chr18	-	5078	2	ISM	ENSMUSG00000034320.15	ENSMUST00000146409.8	7814	4	9224	2370	-2019	1933	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGAGCAGTGTTAGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	61335460	61328360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_61332731_61334752
ONT_simulated_read_8630955	chr17	-	292	1	ISM	ENSMUSG00000040680.10	ENSMUST00000046525.10	2123	10	3896	449	3088	-209	mono-exon	FALSE	NA	NA	NA	NA	NA	603	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCGGGAAGACCAGAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	23960911	23960619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_23960600_23960900
ONT_simulated_read_8632217	chr16	-	2867	1	NIC	ENSMUSG00000022533.15	novel	6683	31	NA	NA	51009	-608	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGCCTGAGATTCAAAC	NA	NA	NA	NA	NA	NA	NA	NA	30134715	30131848	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_30131800_30134700
ONT_simulated_read_8633635	chr11	-	705	5	ISM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	4746	1067	4746	-1067	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGCCTCTTCAAAAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	106142159	106141034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979
ONT_simulated_read_8634356	chr1	-	739	4	ISM	ENSMUSG00000054387.14	ENST00000612738.4	954	5	6508	68	-4	-68	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTGGGGCTTCGTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	132946596	132919462	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_132919964_132922240_132922322_132940374_132940450_132946514
ONT_simulated_read_8636792	chr8	-	662	3	ISM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	8	3636	8	-3636	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACAGCCAGGAATGGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	106937557	106930984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_106931173_106936996_106937264_106937350
ONT_simulated_read_8636819	chr11	+	1846	1	NIC	ENSMUSG00000034177.16	novel	3623	11	NA	NA	6	-67893	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTAGAAGCGGTATGCATG	NA	NA	NA	NA	NA	NA	NA	NA	87553547	87555393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_87553500_87555400
ONT_simulated_read_8637841	chr19	-	936	6	ISM	ENSMUSG00000024640.10	ENSMUST00000162053.8	2291	9	6211	905	6211	-905	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	281	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGCCTGTGAGCAGCAC	NA	NA	NA	NA	NA	NA	NA	NA	15895775	15883395	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569
ONT_simulated_read_8638261	chr16	-	1053	1	ISM	ENSMUSG00000022814.7	ENSMUST00000023510.7	3484	6	10124	1080	10124	-1080	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAAGATCCTTTAGCAC	NA	NA	NA	NA	NA	NA	NA	NA	33777284	33776231	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_33776200_33777300
ONT_simulated_read_8638287	chr7	-	1020	8	ISM	ENSMUSG00000030695.17	ENSMUST00000087566.11	1549	10	1463	181	86	-66	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTGAACTAAGGCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	126396850	126394588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815
ONT_simulated_read_8640694	chr5	-	823	7	ISM	ENSMUSG00000001260.11	ENST00000295452.5	1416	8	29	20539	29	-20539	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTAGAAAATCTTTACCT	NA	NA	NA	NA	NA	NA	NA	NA	70973420	70931786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_70931826_70934460_70934614_70935404_70935543_70937992_70938076_70939588_70939810_70951988_70952057_70973299
ONT_simulated_read_8642366	chr11	-	1098	12	ISM	ENSMUSG00000033389.17	ENST00000262444.13	2910	22	109521	9081	109371	-9081	internal_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCTCCTCTGCTGGTCGG	NA	NA	NA	NA	NA	NA	NA	NA	64944022	64902883	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_64902925_64903732_64903751_64912766_64912948_64913951_64914044_64915016_64915131_64917629_64917711_64922476_64922559_64922909_64923022_64929441_64929570_64929976_64930059_64932267_64932337_64943924
ONT_simulated_read_8646617	chr15	-	1083	5	ISM	ENSMUSG00000022391.17	ENSMUST00000171115.3	2743	17	20255	0	20255	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAACAAAAAAAAAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	81593808	81588811	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687
ONT_simulated_read_8646978	chr2	-	1108	8	ISM	ENSMUSG00000017707.10	ENSMUST00000017851.4	3683	10	8136	2270	8136	-2270	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTGTGTGGTTCAAAATG	NA	NA	NA	NA	NA	NA	NA	NA	163478915	163467461	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730
ONT_simulated_read_8649538	chr13	+	2798	7	ISM	ENSMUSG00000021500.18	ENST00000354283.8	3313	22	31739	-1669	31739	-523	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGAACTACTTGGGAAAT	NA	NA	NA	NA	NA	NA	NA	NA	55817576	55828546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_55817663_55818016_55818167_55821753_55821928_55823708_55823928_55824582_55824728_55825333_55825408_55826596
ONT_simulated_read_8650024	chr11	+	164	2	ISM	ENSMUSG00000003119.15	ENSMUST00000003203.14	4837	13	38423	3273	38402	-3273	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAGAAGATCCACCTCCG	NA	NA	NA	NA	NA	NA	NA	NA	98132562	98134257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_98132656_98134186
ONT_simulated_read_8650718	chr2	+	1118	7	ISM	ENSMUSG00000026879.15	ENSMUST00000028239.8	2653	17	0	12824	0	-12822	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGGGCGGGTCCTAGGTC	NA	NA	NA	NA	NA	NA	NA	NA	35172391	35185080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_35172614_35173916_35174122_35174685_35174841_35180344_35180507_35182598_35182749_35183489_35183580_35184946
ONT_simulated_read_8652291	chr4	-	2416	14	ISM	ENSMUSG00000008305.19	ENSMUST00000030095.11	2569	20	41739	-400	41739	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTTCCTCCTTGACTC	NA	NA	NA	NA	NA	NA	NA	NA	72076650	72036041	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_72036629_72036727_72036805_72038376_72038528_72040580_72040729_72043008_72043257_72044424_72044675_72055318_72055396_72056728_72056926_72057925_72058071_72059397_72059551_72060063_72060118_72063546_72063658_72075699_72075717_72076449
ONT_simulated_read_8652841	chr17	+	921	1	ISM	ENSMUSG00000034377.11	ENSMUST00000149756.8	8784	14	125761	7056	94504	-2810	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCCTCTTGTGTCCCCTC	NA	NA	NA	NA	NA	NA	NA	NA	6282926	6283847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_6282900_6283800
ONT_simulated_read_8654318	chr1	-	1019	1	ISM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	33669	2529	33669	-2529	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCACTCCATGTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	13697101	13696082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_13696100_13697100
ONT_simulated_read_8655454	chr10	+	1311	13	ISM	ENSMUSG00000015889.9	ENSMUST00000016033.9	2029	19	40	10351	40	-10300	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGTAACGACTGATGAC	NA	NA	NA	NA	NA	NA	NA	NA	93289312	93310385	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337
ONT_simulated_read_865617	chr13	+	2865	4	ISM	ENSMUSG00000021326.14	ENSMUST00000021761.13	4204	8	9930	-1	8723	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGCTGTTATTTTTTGGG	NA	NA	NA	NA	NA	NA	NA	NA	21374030	21378894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_21374141_21374261_21374295_21375389_21375417_21376199
ONT_simulated_read_8657495	chr7	+	438	4	NIC	ENSMUSG00000038695.14	novel	922	6	NA	NA	57	-999	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGGCCTAGGCTGTGGGC	NA	NA	NA	NA	NA	NA	NA	NA	44117574	44119961	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_+_44117615_44117729_44117842_44118233_44118394_44119835
ONT_simulated_read_8658410	chr1	-	2460	4	ISM	ENSMUSG00000026393.11	ENSMUST00000187407.7	4336	10	104433	1107	103966	-832	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATGAATTTGTCTCAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	138443446	138412681	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_138414849_138426313_138426428_138430308_138430404_138443362
ONT_simulated_read_8658588	chr2	-	1523	4	ISM	ENSMUSG00000027361.16	ENST00000220429.12	2651	9	25371	327	25335	-327	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGAGCAGGACCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	126492071	126471165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_126472303_126481148_126481265_126488482_126488669_126491987
ONT_simulated_read_866211	chr7	+	797	6	NNC	ENSMUSG00000030649.19	novel	865	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	98	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCCAGGTGTGGTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	101545546	101548687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_+_101545658_101546939_101547025_101547153_101547279_101547760_101547821_101548106_101548236_101548400
ONT_simulated_read_8662659	chr7	-	778	1	ISM	ENSMUSG00000030403.10	ENSMUST00000032561.9	2215	13	14111	0	14111	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	18991631	18990853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_18990900_18991600
ONT_simulated_read_8663244	chr5	+	1204	8	ISM	ENSMUSG00000058013.12	ENSMUST00000202308.4	1792	10	55052	210	54932	150	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGTATCAAAAATCATGGC	NA	NA	NA	NA	NA	NA	NA	NA	93296361	93324086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358_93315547_93323898
ONT_simulated_read_866515	chr13	+	1909	6	ISM	ENSMUSG00000015671.12	ENSMUST00000170836.4	2911	8	3532	814	3506	-814	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTCATAATCATCTACAGC	NA	NA	NA	NA	NA	NA	NA	NA	14791356	14801407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ONT_simulated_read_8668610	chr18	+	1317	12	ISM	ENSMUSG00000024271.9	ENST00000542824.5	1584	14	3295	-2	3295	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGTTTCTCAACCAAAG	NA	NA	NA	NA	NA	NA	NA	NA	24748260	24765941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815
ONT_simulated_read_8668956	chr9	-	574	4	ISM	ENSMUSG00000066839.13	ENSMUST00000180180.8	1676	9	11	4201	0	-3993	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTGCGCAAGCGCGGC	NA	NA	NA	NA	NA	NA	NA	NA	21996723	21987742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_21987942_21989443_21989562_21995318_21995505_21996652
ONT_simulated_read_8671386	chr14	+	488	4	ISM	ENSMUSG00000022066.17	ENSMUST00000185072.8	3589	13	24	16478	0	459	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCGGATATTTGTCTACT	NA	NA	NA	NA	NA	NA	NA	NA	69792896	69806491	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_69792988_69803184_69803294_69804771_69804970_69806401
ONT_simulated_read_8671696	chr12	+	776	3	ISM	ENSMUSG00000021192.17	ENSMUST00000179218.9	2827	13	57	23324	0	-23324	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAACCCTCAGAGGAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	102435450	102440840	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_102435623_102438256_102438825_102440804
ONT_simulated_read_8671703	chr12	-	354	1	ISM	ENSMUSG00000041415.11	ENSMUST00000041987.7	9851	27	29515	34342	29515	-25819	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAATTGAAGAAAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	104688696	104688342	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_104688300_104688700
ONT_simulated_read_8672437	chr11	-	992	7	ISM	ENSMUSG00000020792.16	ENST00000634349.1	2068	19	1408	6360	1407	-5335	internal_fragment	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTACCCCTCCCTCCCGCCA	NA	NA	NA	NA	NA	NA	NA	NA	116195875	116186368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_116186516_116187555_116187625_116188396_116188490_116191091_116191260_116191929_116192153_116195402_116195509_116195689
ONT_simulated_read_8673948	chr2	-	1042	8	ISM	ENSMUSG00000027610.18	ENSMUST00000130881.8	1724	12	15075	300	15075	-300	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTCCAAAGCTTCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	155419559	155405408	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441
ONT_simulated_read_8676653	chr10	-	1480	1	ISM	ENSMUSG00000112095.2	ENSMUST00000219429.2	2547	3	2550	839	2550	-839	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACACAATGGAGTACTACT	NA	NA	NA	NA	NA	NA	NA	NA	122403246	122401766	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_122401800_122403200
ONT_simulated_read_8677538	chr5	-	493	1	ISM	ENSMUSG00000039747.12	ENSMUST00000041048.6	3908	3	19781	2981	19696	-2976	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCAGGTGGTGTGAGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	136179786	136179293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_136179300_136179800
ONT_simulated_read_8678749	chr7	-	429	1	Genic_Genomic	ENSMUSG00000030827.6	novel	NA	NA	NA	NA	1179	3	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTGAGATATGTTTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	45263735	45263306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr7_-_45263300_45263700
ONT_simulated_read_8680130	chr2	-	369	3	ISM	ENSMUSG00000016346.18	ENST00000344462.8	2566	14	48048	606	48044	-606	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGACAGCCGTGACCAT	NA	NA	NA	NA	NA	NA	NA	NA	180728876	180723438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_180723569_180724125_180724250_180728761
ONT_simulated_read_8680357	chr16	-	1695	10	ISM	ENSMUSG00000022962.16	ENSMUST00000231380.2	1852	11	3779	118	3779	-118	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTTGAGCTTGTATCA	NA	NA	NA	NA	NA	NA	NA	NA	91440034	91430410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844
ONT_simulated_read_8680684	chr9	-	868	1	NIC	ENSMUSG00000032562.14	novel	1777	9	NA	NA	20213	-107	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCCCGGGTCCTCCAGCG	NA	NA	NA	NA	NA	NA	NA	NA	107492298	107491430	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_107491400_107492300
ONT_simulated_read_8681444	chr17	-	667	5	ISM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	124	32667	124	-32667	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAGAAGGCTAAAAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	45744539	45735476	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
ONT_simulated_read_8682627	chr9	+	1307	6	ISM	ENSMUSG00000032058.15	ENSMUST00000175645.8	1931	14	13127	-454	13118	454	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAGCACTGTGACTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	50781383	50791841	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
ONT_simulated_read_8683535	chr1	-	202	2	ISM	ENSMUSG00000098234.8	ENSMUST00000182819.8	816	3	832	0	832	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTGGGCAGTAATTTC	NA	NA	NA	NA	NA	NA	NA	NA	10012616	10012247	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_10012381_10012547
ONT_simulated_read_8688770	chr15	-	700	5	ISM	ENSMUSG00000055737.13	ENSMUST00000110697.9	1213	9	125119	-14	125119	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACAGAATTTGTTTCCAAA	NA	NA	NA	NA	NA	NA	NA	NA	3376007	3357006	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_3357169_3357455_3357625_3362828_3363008_3370400_3370574_3375990
ONT_simulated_read_8694079	chr2	-	2059	1	ISM	ENSMUSG00000078889.12	ENSMUST00000109020.9	3438	3	8601	1077	8469	809	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTAAAGCCTTTGCACAT	NA	NA	NA	NA	NA	NA	NA	NA	175584285	175582226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_175582200_175584300
ONT_simulated_read_8695250	chr13	-	1255	1	ISM	ENSMUSG00000005312.16	ENSMUST00000058735.12	3686	11	37652	591	37618	-584	mono-exon	FALSE	NA	NA	NA	NA	NA	339	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTGGGTGAAAAAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	58325815	58324560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_58324600_58325800
ONT_simulated_read_8695468	chr3	-	151	1	NIC	ENSMUSG00000027845.16	novel	4113	3	NA	NA	5322	-886	mono-exon	FALSE	NA	NA	NA	NA	NA	328	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGTGGACCATACGGAG	NA	NA	NA	NA	NA	NA	NA	NA	103711372	103711221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_103711200_103711400
ONT_simulated_read_8700539	chr18	-	482	3	ISM	ENSMUSG00000024579.8	ENSMUST00000025472.7	2017	6	3919	2566	3919	-2566	internal_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCGAGTCCCTGCTCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	61836787	61832473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_61832576_61835266_61835442_61836582
ONT_simulated_read_8703296	chr9	+	1121	1	ISM	ENSMUSG00000025239.4	ENSMUST00000026269.4	4848	8	38	41688	38	-41688	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCCACATTGCCCAAATC	NA	NA	NA	NA	NA	NA	NA	NA	123307808	123308929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_123307800_123308900
ONT_simulated_read_8704946	chr4	+	275	3	ISM	ENSMUSG00000038827.12	ENSMUST00000045368.12	4275	6	269	5334	269	-5334	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAAATTTAAGCGGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	56802617	56804267	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_56802727_56803595_56803648_56804153
ONT_simulated_read_8708028	chr13	-	1675	12	ISM	ENSMUSG00000021546.19	ENSMUST00000225674.2	2704	16	4345	711	259	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	264	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	58545610	58539763	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566
ONT_simulated_read_8708762	chr4	-	633	6	ISM	ENSMUSG00000051517.15	ENSMUST00000054538.13	1659	9	357	1078	357	-1078	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCAAGCCTCGGCCCCCAC	NA	NA	NA	NA	NA	NA	NA	NA	43499338	43497219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_43497317_43497581_43497711_43497958_43498030_43498585_43498705_43498895_43499017_43499242
ONT_simulated_read_8709215	chrX	-	337	1	ISM	ENSMUSG00000051159.17	ENSMUST00000050551.10	901	3	4195	269	2634	-246	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGTCTCCGGGATCTGTCT	NA	NA	NA	NA	NA	NA	NA	NA	101291592	101291255	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_101291300_101291600
ONT_simulated_read_8709501	chr7	+	211	1	ISM	ENSMUSG00000037049.10	ENSMUST00000046983.10	2412	6	66	3753	66	-3753	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCTGGGCTTGGCGCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	105203632	105203843	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_105203600_105203800
ONT_simulated_read_8710792	chr18	-	279	3	ISM	ENSMUSG00000041840.9	ENSMUST00000048192.9	1003	9	3592	3435	2852	-1566	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGCAGAAAAGGCCAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	77851888	77848702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_77848731_77849681_77849817_77851772
ONT_simulated_read_871083	chr5	+	239	2	ISM	ENSMUSG00000000916.16	ENSMUST00000000940.15	2243	10	4226	1754	4226	-1754	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGACCAGCGTTACAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	135403032	135403898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_135403154_135403780
ONT_simulated_read_8711013	chr7	-	548	3	ISM	ENSMUSG00000003123.16	ENSMUST00000206861.2	3171	9	4374	3835	4374	-3835	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCACTGAGCGTACTCTC	NA	NA	NA	NA	NA	NA	NA	NA	25084275	25082920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_25083106_25083797_25084090_25084204
ONT_simulated_read_87121	chr7	+	612	5	ISM	ENSMUSG00000053046.17	ENSMUST00000078200.12	2363	19	256	14040	-76	-14040	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGAGTGGTGCCCCAT	NA	NA	NA	NA	NA	NA	NA	NA	141503743	141538702	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_141503917_141535273_141535369_141536717_141536804_141538130_141538272_141538585
ONT_simulated_read_8713085	chr11	-	928	9	ISM	ENSMUSG00000025173.14	ENST00000392325.9	1491	11	5084	1174	5084	-1174	internal_fragment	FALSE	canonical	NA	NA	NA	NA	259	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGCACAGTTCCTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	121240133	121219224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221059_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057
ONT_simulated_read_8714528	chr16	+	1832	16	ISM	ENSMUSG00000022842.19	ENST00000357474.9	2490	19	1154	202	1154	-202	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAGAGCTCTCACGAGGG	NA	NA	NA	NA	NA	NA	NA	NA	20449894	20463830	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_20450063_20451281_20451407_20451497_20451645_20451799_20451866_20456410_20456600_20457409_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463009_20463090_20463187_20463809
ONT_simulated_read_8716352	chr2	-	537	3	ISM	ENSMUSG00000068614.8	ENSMUST00000090269.7	1473	7	826	2342	826	-2342	internal_fragment	FALSE	canonical	NA	NA	NA	NA	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTATGCCTTACCCCATGC	NA	NA	NA	NA	NA	NA	NA	NA	113882542	113880104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_113880158_113880769_113881095_113882383
ONT_simulated_read_8718891	chr6	-	857	6	ISM	ENSMUSG00000038600.13	ENST00000478480.2	1397	10	16	11983	16	-11983	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGAGTTTCTTCTTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	38055877	38037906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_38038024_38044671_38044766_38048783_38048942_38051056_38051197_38053620_38053772_38055680
ONT_simulated_read_8719140	chr17	-	2231	9	ISM	ENSMUSG00000023944.15	ENST00000371554.2	2613	11	996	1	257	0	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	7457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTGCTCTCCTTGTAAC	NA	NA	NA	NA	NA	NA	NA	NA	45882508	45878700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338
ONT_simulated_read_8719377	chr1	-	780	5	ISM	ENSMUSG00000026200.14	ENST00000409640.5	1617	13	7977	0	7977	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	169	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGACCCTGGAGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	75177892	75176134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_75176402_75176554_75176771_75176973_75177106_75177587_75177702_75177841
ONT_simulated_read_8723162	chr19	+	1362	1	ISM	ENSMUSG00000096740.9	ENSMUST00000187504.7	3164	6	6797	737	6797	-737	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTATATATGTTGTGTAT	NA	NA	NA	NA	NA	NA	NA	NA	8867892	8869254	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_8867900_8869300
ONT_simulated_read_8724711	chr14	-	1573	9	ISM	ENSMUSG00000021982.15	ENSMUST00000171683.3	1892	10	984	130	876	-130	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTCAGCCACCCAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	59834409	59805307	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_59805488_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310
ONT_simulated_read_8727961	chr8	-	884	1	ISM	ENSMUSG00000054408.10	ENSMUST00000067476.9	3466	5	6603	2079	6603	-2079	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGGTCCCACTGAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	54976430	54975546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_54975500_54976400
ONT_simulated_read_8729010	chr15	-	1512	8	NIC	ENSMUSG00000022442.17	novel	1876	12	NA	NA	8584	0	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAGATCTACCTGCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	83386491	83368028	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_83368515_83373669_83373834_83376743_83376827_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281
ONT_simulated_read_872954	chr16	+	461	3	ISM	ENSMUSG00000022946.11	ENSMUST00000227156.2	7340	36	43808	33097	43808	-33095	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGCGCCCTGGGGAGGG	NA	NA	NA	NA	NA	NA	NA	NA	93570794	93574381	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_93570998_93573774_93573898_93574246
ONT_simulated_read_8729592	chr16	+	1911	17	ISM	ENSMUSG00000022770.18	ENST00000660553.1	3730	22	36994	1194	36988	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCTCCACACTGACACAG	NA	NA	NA	NA	NA	NA	NA	NA	31610588	31690666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31666453_31666488_31673470_31673507_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ONT_simulated_read_8729727	chr2	-	720	5	ISM	ENSMUSG00000027466.16	ENST00000353660.7	1830	11	7848	2328	7796	-2328	internal_fragment	FALSE	canonical	NA	NA	NA	NA	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACAGGGACCTTCTAGC	NA	NA	NA	NA	NA	NA	NA	NA	152166536	152161042	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444
ONT_simulated_read_873049	chr3	+	694	5	ISM	ENSMUSG00000028101.19	ENSMUST00000107076.10	2858	14	58	5424	58	-5424	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCTTTGTTAAGGTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	96603757	96607854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_96603848_96606735_96607154_96607308_96607394_96607533_96607585_96607804
ONT_simulated_read_8730710	chr19	-	1051	9	ISM	ENSMUSG00000024978.12	ENSMUST00000061856.6	3832	21	8228	10697	8228	-9790	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCGACGAAGGCTGATTG	NA	NA	NA	NA	NA	NA	NA	NA	55079655	55068862	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_55068932_55069823_55069910_55070033_55070148_55071632_55071846_55072129_55072230_55075816_55075954_55076542_55076640_55077229_55077377_55079567
ONT_simulated_read_873082	chr5	-	604	1	ISM	ENSMUSG00000029434.13	ENSMUST00000031388.13	4235	13	41817	1959	41765	407	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTGACCACTGATCCAC	NA	NA	NA	NA	NA	NA	NA	NA	123669284	123668680	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_123668700_123669300
ONT_simulated_read_8732489	chr1	-	647	1	NIC	ENSMUSG00000026202.14	novel	2840	4	NA	NA	2700	-1720	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTTGTGGACTGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	75193238	75192591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_75192600_75193200
ONT_simulated_read_8732687	chrX	-	720	6	ISM	ENSMUSG00000031167.17	ENSMUST00000115615.9	1183	7	651	377	607	-370	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAATATTTTTCCTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	8011311	8008976	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_8009195_8009485_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193
ONT_simulated_read_8736258	chr11	+	2707	11	ISM	ENSMUSG00000032740.18	ENSMUST00000239407.2	6051	31	82148	18794	82148	-18794	internal_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTGTCAACAGACTTCA	NA	NA	NA	NA	NA	NA	NA	NA	29406495	29436011	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_29406603_29410848_29411034_29411710_29411849_29413119_29414191_29415610_29415739_29420314_29420457_29427293_29427459_29430489_29430652_29432108_29432387_29432597_29432742_29435824
ONT_simulated_read_8742372	chr9	-	892	3	ISM	ENSMUSG00000032324.12	ENST00000559494.1	1280	5	15046	112	14646	-112	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTTGGTGTGAGTGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	56053180	56043333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_56044020_56052772_56052857_56053058
ONT_simulated_read_8743846	chr9	-	464	5	ISM	ENSMUSG00000003131.8	ENSMUST00000172450.3	6873	6	224	10160	224	-4335	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGTAGCAGGTGGGATT	NA	NA	NA	NA	NA	NA	NA	NA	45896125	45884316	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896002
ONT_simulated_read_8744878	chr14	+	4146	17	FSM	ENSMUSG00000021767.20	ENST00000372714.6	5910	17	38	1726	36	-1585	multi-exon	FALSE	canonical	NA	NA	NA	NA	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTTGACCCAAGAAAACA	NA	NA	NA	NA	NA	NA	NA	NA	21550956	21719356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_21551147_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
ONT_simulated_read_8745224	chrX	-	372	1	ISM	ENSMUSG00000015668.14	ENSMUST00000015812.12	1626	7	3141	170	2508	137	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTCTTGGGAACCTT	NA	NA	NA	NA	NA	NA	NA	NA	99667033	99666661	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_99666700_99667000
ONT_simulated_read_8745473	chr2	-	526	1	ISM	ENSMUSG00000041358.2	ENSMUST00000043970.2	3731	7	9138	1680	9138	-1451	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGAAAAACAGGCTTTGAC	NA	NA	NA	NA	NA	NA	NA	NA	112080498	112079972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_112080000_112080500
ONT_simulated_read_8745613	chr14	+	2132	13	ISM	ENSMUSG00000054423.15	ENST00000357948.7	5183	27	333531	382	333221	263	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCAGACCAACTGTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	9980245	10096821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_9980287_9980658_9980783_9996247_9996355_10002583_10002741_10003762_10003905_10015443_10015600_10019893_10020042_10028847_10028923_10029808_10029893_10051725_10051759_10058101_10058210_10093053_10093159_10095969
ONT_simulated_read_8748687	chr11	-	1942	9	ISM	ENSMUSG00000020516.16	ENST00000443572.6	1932	14	28568	-581	1446	-447	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	279	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTGAGTCAAGCCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	86407018	86392600	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916
ONT_simulated_read_8749329	chr1	+	885	6	ISM	ENSMUSG00000026622.16	ENSMUST00000027931.8	3227	8	738	3628	738	-3628	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGCAGAGGACAAACTGG	NA	NA	NA	NA	NA	NA	NA	NA	191554293	191561534	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503
ONT_simulated_read_8752726	chr7	-	742	9	FSM	ENSMUSG00000001794.14	ENST00000590874.5	765	9	0	23	0	-23	multi-exon	FALSE	canonical	NA	NA	NA	NA	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCTCACTATGGAGCCA	NA	NA	NA	NA	NA	NA	NA	NA	29893512	29886907	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29892291_29892326_29893302
ONT_simulated_read_8755607	chr9	-	672	7	ISM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	2539	21945	2469	3571	internal_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAATGCTGACAGGCCGT	NA	NA	NA	NA	NA	NA	NA	NA	36676436	36662584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349
ONT_simulated_read_8760509	chr7	-	420	3	NIC	ENSMUSG00000030934.10	novel	615	5	NA	NA	0	-2523	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	116	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCATTGCGGCTCTTG	NA	NA	NA	NA	NA	NA	NA	NA	132171833	132162502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_132162595_132163512_132163642_132171634
ONT_simulated_read_8768519	chr9	-	468	1	NIC	ENSMUSG00000032468.12	novel	4647	22	NA	NA	48066	-1312	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCATTGAGAAATTCAAATC	NA	NA	NA	NA	NA	NA	NA	NA	99402636	99402168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_-_99402200_99402600
ONT_simulated_read_8771525	chr5	+	270	3	ISM	ENSMUSG00000000916.16	ENSMUST00000000940.15	2243	10	38	5497	38	-5497	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCTGGGCCGGCACCAG	NA	NA	NA	NA	NA	NA	NA	NA	135398844	135400155	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_135398931_135399044_135399168_135400094
ONT_simulated_read_877259	chr7	-	2937	17	ISM	ENSMUSG00000005610.18	ENSMUST00000162415.9	7995	22	4476	4376	4463	-194	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGCACAAAACTGATCAGT	NA	NA	NA	NA	NA	NA	NA	NA	110677761	110671332	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628
ONT_simulated_read_877575	chr1	-	1307	12	ISM	ENSMUSG00000026034.18	ENSMUST00000034868.14	1796	13	2158	316	2158	-316	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGAGCTTCTCTTTGAC	NA	NA	NA	NA	NA	NA	NA	NA	58461067	58451474	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58459279_58459371_58460241_58460468_58460932
ONT_simulated_read_8777028	chr9	-	709	1	ISM	ENSMUSG00000035934.17	ENSMUST00000177218.8	3393	11	190270	1349	190270	-1346	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATAACCAGTGGCCAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	36804335	36803626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_36803600_36804300
ONT_simulated_read_8777410	chr16	+	378	4	ISM	ENSMUSG00000060636.15	ENSMUST00000115076.8	519	5	0	1415	0	-1396	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTTCGTGCCAAATTCCG	NA	NA	NA	NA	NA	NA	NA	NA	32877175	32879130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_32877276_32877505_32877549_32877759_32877913_32879048
ONT_simulated_read_8777796	chr1	+	784	6	ISM	ENSMUSG00000026342.11	ENSMUST00000027580.11	2733	16	23497	672	23497	-672	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACGGAACTCCTCTGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	125512249	125522885	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_125512295_125512810_125512971_125515101_125515193_125517547_125517703_125518769_125518867_125522649
ONT_simulated_read_8778861	chr8	-	722	5	ISM	ENSMUSG00000034416.19	ENSMUST00000109093.9	7389	43	72765	0	72759	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTTTATCCACAGGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	117736423	117722417	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_117722580_117724274_117724407_117724814_117724917_117726511_117726723_117736308
ONT_simulated_read_878078	chr5	-	413	1	ISM	ENSMUSG00000058291.15	ENSMUST00000110905.9	4749	6	13040	2657	13019	-189	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCAGACGATGTATTATG	NA	NA	NA	NA	NA	NA	NA	NA	138604983	138604570	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_138604600_138605000
ONT_simulated_read_8783575	chr11	-	356	1	ISM	ENSMUSG00000041629.8	ENSMUST00000120194.2	2619	3	20631	1850	20599	178	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGCCGGGTCAGCAGGTG	NA	NA	NA	NA	NA	NA	NA	NA	113554350	113553994	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_113554000_113554400
ONT_simulated_read_878669	chr16	-	1181	9	ISM	ENSMUSG00000022751.10	ENSMUST00000023432.10	1286	10	1116	53	1116	-52	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATCAACATGACACTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	56986579	56977080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880_56983970_56984560_56984682_56986460
ONT_simulated_read_8786815	chr12	+	291	3	ISM	ENSMUSG00000020598.17	ENST00000351718.8	5774	25	14830	49359	14830	-47481	internal_fragment	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACCCTCATCTGCAGAGC	NA	NA	NA	NA	NA	NA	NA	NA	44594076	44598143	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_44594127_44596656_44596842_44598087
ONT_simulated_read_8788833	chr5	-	629	1	ISM	ENSMUSG00000038780.15	ENSMUST00000110677.8	5420	19	86412	2304	86412	312	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGATAGGTAAGGGAATTG	NA	NA	NA	NA	NA	NA	NA	NA	144816237	144815608	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_144815600_144816200
ONT_simulated_read_8789579	chrX	-	1818	5	ISM	ENSMUSG00000009406.14	ENSMUST00000009550.14	3548	6	8811	1561	-33	480	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGAGCCCTTGTACGATTT	NA	NA	NA	NA	NA	NA	NA	NA	20808036	20801194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_20801788_20801869_20801972_20802470_20802903_20803355_20803803_20807792
ONT_simulated_read_8791161	chr3	-	3246	17	ISM	ENSMUSG00000028184.13	ENST00000674168.1	5782	21	99950	7897	64012	-2819	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGCCTCCCGACCGAGAG	NA	NA	NA	NA	NA	NA	NA	NA	148596259	148529415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_148529461_148532000_148532170_148533176_148533222_148534112_148534205_148539497_148539565_148540939_148541161_148541987_148542198_148543199_148543374_148544744_148544951_148545280_148545407_148552484_148552669_148556471_148556658_148557530_148557635_148558202_148558497_148564368_148565170_148571235_148571346_148596047
ONT_simulated_read_8791538	chr13	-	176	1	ISM	ENSMUSG00000015672.5	ENSMUST00000220621.2	3013	3	2439	2367	2439	-2367	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATCAGGGCAAGAGGATT	NA	NA	NA	NA	NA	NA	NA	NA	14785311	14785135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_14785100_14785300
ONT_simulated_read_8791673	chr11	+	534	5	ISM	ENSMUSG00000007739.11	ENSMUST00000020562.5	1634	13	10287	296	10287	-296	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTTGGTGTCAGTCAG	NA	NA	NA	NA	NA	NA	NA	NA	22950936	22952855	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816
ONT_simulated_read_8792332	chr17	-	1818	1	ISM	ENSMUSG00000073436.12	ENSMUST00000119848.8	5226	7	2377	2375	2377	1291	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACATCCGACGTCCCAATG	NA	NA	NA	NA	NA	NA	NA	NA	25111652	25109834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_25109800_25111700
ONT_simulated_read_8792657	chr3	-	532	1	ISM	ENSMUSG00000050359.8	ENSMUST00000054599.8	806	2	1206	206	1206	-206	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAATCTTAATCCCTCTC	NA	NA	NA	NA	NA	NA	NA	NA	92391996	92391464	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_92391500_92392000
ONT_simulated_read_8792902	chr1	-	752	6	ISM	ENSMUSG00000038079.15	ENSMUST00000087475.11	1823	13	11012	449	11012	-135	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATAATGCTGAAATGCTA	NA	NA	NA	NA	NA	NA	NA	NA	59147953	59140204	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833
ONT_simulated_read_8793564	chr5	-	382	1	FSM	ENSMUSG00000081865.2	ENSMUST00000118871.2	828	1	0	446	0	-446	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGAGGAGGACGTAAAACT	NA	NA	NA	NA	NA	NA	NA	NA	110266715	110266333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_110266300_110266700
ONT_simulated_read_8793827	chr5	-	1668	1	ISM	ENSMUSG00000051339.11	ENSMUST00000212276.2	5864	8	47002	2994	47002	-2994	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGACTCTCCCATGGTTG	NA	NA	NA	NA	NA	NA	NA	NA	113238850	113237182	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_113237200_113238800
ONT_simulated_read_8796485	chr13	-	2480	14	ISM	ENSMUSG00000116207.2	ENSMUST00000223268.2	3339	17	14124	376	14124	-376	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGACACCTGCATTTAGTG	NA	NA	NA	NA	NA	NA	NA	NA	119531364	119472439	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511311_119518211_119518400_119523114_119523204_119525729_119525818_119531146
ONT_simulated_read_8797024	chr18	-	826	3	ISM	ENSMUSG00000024644.18	ENST00000324301.12	1116	8	12045	-505	12045	-59	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGAAGCACCAGTCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	84687160	84685652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_84686226_84686662_84686811_84687055
ONT_simulated_read_8799408	chr4	-	1304	15	ISM	ENSMUSG00000028559.18	ENSMUST00000030288.14	2871	24	29961	6708	-15701	-6276	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGTCCCCCACTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	109029508	108925559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470
ONT_simulated_read_880079	chr11	+	974	6	ISM	ENSMUSG00000020873.16	ENSMUST00000021243.16	1523	9	0	2569	0	-2569	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGAGCCATTGTGCTGTT	NA	NA	NA	NA	NA	NA	NA	NA	95275517	95280033	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905
ONT_simulated_read_8800972	chr8	+	206	3	ISM	ENSMUSG00000055681.15	ENST00000349893.8	724	8	5700	9	5700	-9	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCAAGGTGAGCAGGGCA	NA	NA	NA	NA	NA	NA	NA	NA	70761156	70765422	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70761227_70764277_70764347_70765355
ONT_simulated_read_8801256	chr2	-	1474	10	ISM	ENSMUSG00000006469.14	ENSMUST00000006638.8	2183	13	1870	299	1721	-146	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACTCTGGCTCCATTCT	NA	NA	NA	NA	NA	NA	NA	NA	25122506	25119208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25119528_25120584_25120710_25120784_25120902_25120987_25121156_25121234_25121323_25121432_25121523_25121679_25121876_25121962_25122075_25122158_25122303_25122391
ONT_simulated_read_8801260	chr3	-	4913	6	ISM	ENSMUSG00000054414.5	ENSMUST00000067485.4	9020	11	22431	3405	22421	-3405	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACAGAAACACTTTTCACA	NA	NA	NA	NA	NA	NA	NA	NA	115778624	115736026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_115740361_115747700_115747851_115750519_115750611_115772292_115772429_115775410_115775462_115778473
ONT_simulated_read_880253	chr3	-	963	4	ISM	ENSMUSG00000048581.13	ENSMUST00000061706.7	1640	5	2155	455	2155	-455	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAGTTCGAGGCCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	63834738	63822559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_63823160_63827621_63827783_63832754_63832903_63834684
ONT_simulated_read_8804321	chr15	+	2480	17	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	17073	114	16879	-92	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAGCACTCCCTCTACAG	NA	NA	NA	NA	NA	NA	NA	NA	81773582	81799220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
ONT_simulated_read_8805417	chr1	-	1287	10	ISM	ENSMUSG00000046836.14	ENSMUST00000057062.12	3430	14	4982	1728	4982	-1726	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTAAGTTTCATGTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	183073554	183059643	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470
ONT_simulated_read_8806290	chr10	+	1903	11	ISM	ENSMUSG00000020064.10	ENSMUST00000020258.10	3898	25	46593	0	46581	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATACCAGTAGTTTCTATG	NA	NA	NA	NA	NA	NA	NA	NA	63126282	63153653	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_63126456_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
ONT_simulated_read_8806680	chrX	+	201	1	FSM	ENSMUSG00000081375.2	ENSMUST00000119926.2	343	1	0	142	0	-142	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCCTGCAATGGTACTG	NA	NA	NA	NA	NA	NA	NA	NA	73304637	73304838	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_73304600_73304800
ONT_simulated_read_8806953	chr1	-	271	1	FSM	ENSMUSG00000100551.2	ENSMUST00000187109.2	241	1	0	-30	0	30	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTGTATAAAACCAACTCA	NA	NA	NA	NA	NA	NA	NA	NA	151396438	151396167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_151396200_151396400
ONT_simulated_read_880788	chr2	-	1362	6	ISM	ENSMUSG00000026761.13	ENST00000264169.6	1458	14	32756	-637	31895	637	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCTACTTCCACAACTAAT	NA	NA	NA	NA	NA	NA	NA	NA	48807351	48794784	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176
ONT_simulated_read_8813726	chr5	+	758	1	ISM	ENSMUSG00000029227.16	ENSMUST00000080164.12	4673	17	62467	117	62368	-117	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGAAGATAGTGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	74758576	74759334	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_74758600_74759300
ONT_simulated_read_8821843	chr17	+	641	5	ISM	ENSMUSG00000032624.17	ENSMUST00000234584.2	2934	23	0	50816	0	-50740	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTGCTATACTTTATC	NA	NA	NA	NA	NA	NA	NA	NA	83658643	83734780	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_83658669_83717454_83717638_83729034_83729165_83732686_83732861_83734651
ONT_simulated_read_8822397	chr4	-	388	1	NIC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	16236	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1364	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	NA	NA	NA	NA	NA	NA	NA	119135565	119135177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_119135200_119135600
ONT_simulated_read_8822578	chr10	+	718	5	ISM	ENSMUSG00000025373.15	ENSMUST00000096386.13	3144	7	3432	2958	3432	-2958	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAGACAATCGAATACAAT	NA	NA	NA	NA	NA	NA	NA	NA	128251046	128273249	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_128251171_128264459_128264573_128271181_128271454_128272336_128272473_128273176
ONT_simulated_read_882447	chr8	-	1106	7	ISM	ENSMUSG00000031673.7	ENST00000566827.5	2340	11	55742	530	55742	-530	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGAGGAGGCAAAAGAAAGA	NA	NA	NA	NA	NA	NA	NA	NA	103391423	103361419	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_103361443_103363559_103363812_103374094_103374213_103374429_103374564_103377254_103377392_103384820_103385075_103391235
ONT_simulated_read_8825696	chr19	-	1297	9	ISM	ENSMUSG00000024941.10	ENST00000525364.5	2572	16	544	2446	544	-2446	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGAGCCACTAAGGACC	NA	NA	NA	NA	NA	NA	NA	NA	5820884	5810900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750
ONT_simulated_read_8826986	chr9	-	691	6	ISM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	12812	17282	12742	8234	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAACCTGTCTGATGCTCG	NA	NA	NA	NA	NA	NA	NA	NA	36666163	36657921	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101
ONT_simulated_read_8830756	chr1	-	1666	1	ISM	ENSMUSG00000026409.15	ENSMUST00000171479.8	3342	14	23454	274	23454	-273	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAATGTAGGTGGCTTGA	NA	NA	NA	NA	NA	NA	NA	NA	130618858	130617192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_130617200_130618900
ONT_simulated_read_8830895	chr3	-	1105	6	ISM	ENSMUSG00000039103.13	ENST00000334785.12	2164	11	5701	407	5701	-234	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTTACTGTTAAAGTAAC	NA	NA	NA	NA	NA	NA	NA	NA	151953741	151943521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_151943660_151943883_151944070_151948295_151948518_151949462_151949661_151952722_151952912_151953569
ONT_simulated_read_883455	chr18	+	493	2	ISM	ENSMUSG00000024603.9	ENSMUST00000223984.2	2948	14	28967	1272	28938	-1272	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCTCAGAGGGGCGTTA	NA	NA	NA	NA	NA	NA	NA	NA	60688223	60689739	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_60688277_60689299
ONT_simulated_read_8836032	chr11	-	480	6	ISM	ENSMUSG00000020422.15	ENST00000458317.6	856	10	51540	1606	51540	-1606	internal_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCATGAAGATGAACACCTC	NA	NA	NA	NA	NA	NA	NA	NA	8499054	8482475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_8482510_8488002_8488087_8491166_8491232_8495228_8495352_8497270_8497322_8498931
ONT_simulated_read_8836674	chr8	-	962	1	ISM	ENSMUSG00000058355.9	ENSMUST00000080536.8	3793	18	26487	830	26487	-830	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAACCGATACAGTCTTTA	NA	NA	NA	NA	NA	NA	NA	NA	80411882	80410920	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_80410900_80411900
ONT_simulated_read_8837309	chr9	-	1325	1	ISM	ENSMUSG00000032375.16	ENSMUST00000034934.15	4910	6	16146	2818	16032	1173	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAGAGTGTAAAGTAGCAA	NA	NA	NA	NA	NA	NA	NA	NA	66686626	66685301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_66685300_66686600
ONT_simulated_read_8837990	chr8	+	879	5	FSM	ENSMUSG00000031613.10	ENST00000542498.5	1166	5	141	146	0	-146	multi-exon	TRUE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTGCCTCATAAATATTAA	NA	NA	NA	NA	NA	NA	NA	NA	56747619	56773515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_56747748_56747973_56748098_56751390_56751498_56760628_56760726_56773092
ONT_simulated_read_8838249	chr5	+	291	1	ISM	ENSMUSG00000041870.18	ENSMUST00000102578.11	3717	15	268	30587	268	-30587	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCCCGCGACACCAGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	114913005	114913296	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_114913000_114913300
ONT_simulated_read_8838628	chr4	-	964	1	ISM	ENSMUSG00000028809.17	ENSMUST00000105861.8	3797	17	31874	0	31689	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCACTCACATTTATTCG	NA	NA	NA	NA	NA	NA	NA	NA	135048758	135047794	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_135047800_135048800
ONT_simulated_read_8840543	chr6	-	5659	20	ISM	ENSMUSG00000045095.17	ENST00000621418.4	6147	22	150783	235	121015	-235	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGGGCCAACCTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	93769520	93653370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_93655984_93659932_93660072_93662534_93662679_93663557_93663619_93663762_93663857_93670988_93671190_93674174_93674469_93676596_93676790_93678270_93678363_93684984_93685202_93694220_93694253_93722414_93723036_93724172_93724356_93731994_93732088_93734635_93734746_93737688_93737747_93746488_93746525_93750587_93750671_93762425_93762628_93769327
ONT_simulated_read_8842937	chr2	+	729	2	ISM	ENSMUSG00000007476.19	ENSMUST00000113654.8	4194	3	7	7973	0	-7973	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGGACCAAGTCACGGATT	NA	NA	NA	NA	NA	NA	NA	NA	30127733	30145824	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_30127818_30145179
ONT_simulated_read_8843707	chr6	+	642	2	ISM	ENSMUSG00000005893.15	ENSMUST00000113463.8	2368	15	71744	-278	71744	55	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCTACTAATTACCAGGG	NA	NA	NA	NA	NA	NA	NA	NA	92141157	92144964	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_92141275_92144439
ONT_simulated_read_8844255	chr11	-	276	1	ISM	ENSMUSG00000017188.4	ENSMUST00000017332.4	886	2	742	129	571	-129	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTACCCCTTCACCTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	101169198	101168922	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_101168900_101169200
ONT_simulated_read_8845029	chr5	-	1211	8	ISM	ENSMUSG00000028944.15	ENSMUST00000114975.8	2205	12	31434	603	31434	359	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGAAAATGTGATGTGAT	NA	NA	NA	NA	NA	NA	NA	NA	25082033	25068348	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986
ONT_simulated_read_884570	chr4	-	1224	8	ISM	ENSMUSG00000042446.17	ENSMUST00000106108.9	7102	30	44939	44114	44939	-44114	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGGTGGAGGGAGTACAC	NA	NA	NA	NA	NA	NA	NA	NA	126816989	126799845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126799941_126800313_126800430_126800878_126801030_126804582_126804796_126804902_126805078_126808864_126809121_126809373_126809459_126816856
ONT_simulated_read_8847207	chr11	+	625	1	FSM	ENSMUSG00000058073.5	ENSMUST00000117979.2	375	1	0	-250	0	250	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCAAGCTGTATACCATT	NA	NA	NA	NA	NA	NA	NA	NA	53091510	53092135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_53091500_53092100
ONT_simulated_read_8847571	chr10	+	1690	13	ISM	ENSMUSG00000032763.12	ENSMUST00000218885.2	2233	15	29	776	0	-776	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGGCTGCCCTGAGGGA	NA	NA	NA	NA	NA	NA	NA	NA	78410856	78419537	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463
ONT_simulated_read_8851430	chr3	-	551	3	ISM	ENSMUSG00000005779.13	ENSMUST00000005923.7	1183	7	1931	0	1931	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	758	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTTGTCTTTCTCAATT	NA	NA	NA	NA	NA	NA	NA	NA	94792341	94791403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_94791752_94791981_94792071_94792227
ONT_simulated_read_8851704	chr2	-	1042	1	ISM	ENSMUSG00000026836.16	ENSMUST00000112599.8	2891	10	68623	174	68623	-167	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGTAGAATTTTAGTCCC	NA	NA	NA	NA	NA	NA	NA	NA	58337661	58336619	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_58336600_58337700
ONT_simulated_read_8852726	chr6	-	952	7	ISM	ENSMUSG00000039130.19	ENSMUST00000102992.10	1865	11	3496	6482	3470	-6396	internal_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCCAGTCCTACTACCAG	NA	NA	NA	NA	NA	NA	NA	NA	30387531	30372868	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_30372950_30373241_30373483_30374763_30374919_30375937_30376066_30381779_30381864_30382535_30382687_30387419
ONT_simulated_read_8853045	chr8	-	550	4	ISM	ENSMUSG00000004319.16	ENST00000360642.7	2609	11	38431	16706	3941	-526	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGCTTTGGTGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	61390512	61382609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_61382651_61386114_61386322_61387518_61387642_61390333
ONT_simulated_read_8853232	chr17	-	1572	3	ISM	ENSMUSG00000056692.14	ENSMUST00000114863.10	3892	5	34357	1716	34184	256	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCAGTGTGGGTGGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	28005242	27971924	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_27972970_27986884_27987214_28005044
ONT_simulated_read_8853270	chr4	+	712	6	ISM	ENSMUSG00000028868.14	ENSMUST00000084241.12	5642	9	124	9595	124	-6343	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAACCCACGTAAAATCAA	NA	NA	NA	NA	NA	NA	NA	NA	132857939	132917472	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439
ONT_simulated_read_8853836	chr1	-	630	1	ISM	ENSMUSG00000026162.9	ENSMUST00000152855.3	1586	8	94917	0	94917	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTGTGCTTTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	75006927	75006297	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_75006300_75006900
ONT_simulated_read_8854762	chr14	-	164	1	ISM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	10037	87	10037	-87	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAGGACTGTTTACGCAA	NA	NA	NA	NA	NA	NA	NA	NA	52532548	52532384	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52532400_52532500
ONT_simulated_read_8858107	chr3	-	1387	1	NIC	ENSMUSG00000027531.17	novel	4185	9	NA	NA	15142	21	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCATATTTGATTAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	10381290	10379903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr3_-_10379900_10381300
ONT_simulated_read_8859466	chr5	-	737	5	ISM	ENSMUSG00000029730.17	ENST00000354230.7	2841	14	3109	2113	3109	-2113	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCCCAATTTGAACCTTT	NA	NA	NA	NA	NA	NA	NA	NA	138166400	138164982	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319
ONT_simulated_read_8860883	chr9	+	851	11	ISM	ENSMUSG00000032359.15	ENSMUST00000034915.15	1617	12	292	1162	292	-1162	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAGAATGGATTACTCT	NA	NA	NA	NA	NA	NA	NA	NA	89936611	89956980	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_89936688_89942531_89942564_89943571_89943678_89944769_89944841_89946205_89946311_89946559_89946647_89947444_89947501_89949079_89949162_89950457_89950527_89953871_89953979_89956920
ONT_simulated_read_8861048	chr1	-	1352	1	ISM	ENSMUSG00000060519.12	ENSMUST00000079625.11	3285	6	19159	229	19117	-229	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACACAGCTAAAAATGGTC	NA	NA	NA	NA	NA	NA	NA	NA	156482767	156481415	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_156481400_156482800
ONT_simulated_read_8862776	chrX	-	1383	6	ISM	ENSMUSG00000031134.17	ENSMUST00000114730.8	2019	9	2763	266	1476	-262	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGGTGTCTTCCAACTGA	NA	NA	NA	NA	NA	NA	NA	NA	56435559	56431983	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_56432754_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423
ONT_simulated_read_8863884	chr6	-	664	6	ISM	ENSMUSG00000038456.10	ENST00000492720.5	2541	13	30424	7657	30424	-7657	internal_fragment	TRUE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCGAAGACTGCTGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	39474074	39464769	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39473907
ONT_simulated_read_8868514	chr13	-	1317	7	ISM	ENSMUSG00000021376.12	ENSMUST00000021806.11	2708	9	3014	1103	2928	533	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTTTCAGTTCCCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	47193672	47178121	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579
ONT_simulated_read_8873207	chr15	-	1349	1	ISM	ENSMUSG00000048307.9	ENSMUST00000057486.9	2509	5	17375	429	6673	-429	mono-exon	FALSE	NA	NA	NA	NA	NA	417	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCACCCCTGGCCACCTG	NA	NA	NA	NA	NA	NA	NA	NA	36479591	36478242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_36478200_36479600
ONT_simulated_read_887365	chr9	-	921	10	ISM	ENSMUSG00000032400.19	ENSMUST00000176299.8	1831	18	11442	9304	11442	-7393	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGAGCTTCTCTTCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	64068719	64054578	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652
ONT_simulated_read_8874310	chr1	-	333	1	Genic_Genomic	ENSMUSG00000026721.17	novel	NA	NA	NA	NA	-5805	44	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATGCAGTTTGAGAATCAA	NA	NA	NA	NA	NA	NA	NA	NA	160084835	160084502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr1_-_160084500_160084800
ONT_simulated_read_8874427	chr8	+	1649	9	ISM	ENSMUSG00000037656.10	ENSMUST00000067786.9	3566	11	61991	1250	61991	-1250	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCTATCATGGCTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	23028794	23058378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_23028961_23030375_23030462_23035519_23035617_23048957_23049075_23050512_23050717_23050902_23051495_23054044_23054231_23055629_23055715_23058262
ONT_simulated_read_8876042	chr3	-	749	2	ISM	ENSMUSG00000037161.15	ENSMUST00000108046.8	1409	4	5207	257	5207	-257	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTTTACTAATAGATATT	NA	NA	NA	NA	NA	NA	NA	NA	51298740	51296089	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_51296745_51298646
ONT_simulated_read_8876819	chr2	-	774	3	ISM	ENSMUSG00000078903.11	ENSMUST00000165892.8	1665	4	-53	2101	-53	-73	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTATTCTTCTTTTGATGT	NA	NA	NA	NA	NA	NA	NA	NA	175044907	175038807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_175039399_175039599_175039727_175044851
ONT_simulated_read_8881377	chr3	+	766	4	ISM	ENSMUSG00000038393.15	ENSMUST00000049093.8	2795	8	1763	1045	1763	-1045	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGACTGAGTCAGGGCACT	NA	NA	NA	NA	NA	NA	NA	NA	96467038	96468128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_96467162_96467253_96467411_96467523_96467676_96467794
ONT_simulated_read_8881939	chr19	-	631	7	ISM	ENSMUSG00000025008.16	ENSMUST00000132452.2	1271	9	811	217	383	-217	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGACCAACCTGACTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	40599833	40595785	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_40595848_40596069_40596151_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737
ONT_simulated_read_8882848	chr6	-	200	1	NIC	ENSMUSG00000030243.17	novel	2112	16	NA	NA	24166	-1295	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTTTTATAATCTGCTA	NA	NA	NA	NA	NA	NA	NA	NA	142308596	142308396	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_142308400_142308600
ONT_simulated_read_8883286	chr1	-	466	1	FSM	ENSMUSG00000102824.2	ENSMUST00000191699.2	381	1	0	-85	0	85	mono-exon	FALSE	NA	NA	NA	NA	NA	238	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTTTTGAAAAATAAACTT	NA	NA	NA	NA	NA	NA	NA	NA	189010020	189009554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_189009600_189010000
ONT_simulated_read_8884571	chr17	+	233	4	ISM	ENSMUSG00000059714.14	ENSMUST00000174080.8	1383	12	79	8308	79	-8308	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATGTCAAGAGTGAAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	36134317	36135194	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_36134394_36134698_36134756_36135018_36135095_36135170
ONT_simulated_read_8885732	chr17	-	562	1	ISM	ENSMUSG00000024043.14	ENSMUST00000024840.12	5322	18	158340	2506	50486	-109	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGGCATCTTGTGCGCAT	NA	NA	NA	NA	NA	NA	NA	NA	68152775	68152213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_68152200_68152800
ONT_simulated_read_8886469	chr10	-	1371	12	ISM	ENSMUSG00000019792.9	ENSMUST00000019927.7	2359	13	2982	790	2982	-790	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTTATATAAATAACTGC	NA	NA	NA	NA	NA	NA	NA	NA	30473763	30411010	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30467016_30467099_30470110_30470185_30473735
ONT_simulated_read_8886782	chr6	-	955	1	ISM	ENSMUSG00000072623.7	ENSMUST00000161170.2	3968	6	13922	2494	1970	-108	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGGAGAAGCCCTATGAGT	NA	NA	NA	NA	NA	NA	NA	NA	118442359	118441404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_118441400_118442400
ONT_simulated_read_8890323	chr7	-	2859	17	ISM	ENSMUSG00000030516.15	ENSMUST00000102592.10	7049	28	30813	17092	30589	-16549	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATACAGGTATGAGGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	64990174	64963004	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_64963173_64963840_64964081_64964406_64964758_64967734_64967836_64968111_64968323_64968997_64969081_64972027_64972124_64972241_64972427_64972702_64972923_64973736_64973846_64976009_64976161_64978671_64978778_64979373_64979514_64985779_64985928_64986244_64986414_64986790_64986895_64989897
ONT_simulated_read_889304	chr2	-	859	9	ISM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	1570	5715	1570	-5715	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATGTACAGAAGCAATCC	NA	NA	NA	NA	NA	NA	NA	NA	3512281	3495601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210
ONT_simulated_read_8893633	chr10	-	1101	4	ISM	ENSMUSG00000039497.9	ENST00000331677.7	4708	6	0	6053	0	-2179	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTAGTGGAAGGTCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	34060157	34031975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_34032113_34035964_34036205_34038731_34038986_34059687
ONT_simulated_read_889419	chr19	+	586	5	ISM	ENSMUSG00000040385.8	ENSMUST00000046094.6	1473	7	139	904	-7	-885	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACAGACGTGCCTGACCA	NA	NA	NA	NA	NA	NA	NA	NA	4242202	4244515	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465
ONT_simulated_read_8894440	chr9	-	590	1	ISM	ENSMUSG00000032109.16	ENSMUST00000034621.16	3669	10	14955	230	14592	-229	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCGCCAGTCTTGCCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	44164833	44164243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_44164200_44164800
ONT_simulated_read_8899605	chr11	-	1096	1	ISM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	3522	1982	3505	-229	mono-exon	FALSE	NA	NA	NA	NA	NA	483	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTAGAGTTCCTTCGGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	96711317	96710221	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_96710200_96711300
ONT_simulated_read_8905582	chr5	-	499	1	FSM	ENSMUSG00000104970.2	ENSMUST00000198052.2	594	1	0	95	0	-95	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGAATGCCTATACCATT	NA	NA	NA	NA	NA	NA	NA	NA	110379067	110378568	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_110378600_110379100
ONT_simulated_read_8907870	chr17	-	1147	8	ISM	ENSMUSG00000024039.16	ENSMUST00000067801.14	2533	17	16264	122	16191	-104	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCCCACTCCTCACGTCC	NA	NA	NA	NA	NA	NA	NA	NA	31839948	31831718	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902
ONT_simulated_read_8908580	chr14	-	442	5	ISM	ENSMUSG00000063142.16	ENSMUST00000100831.11	3261	27	367291	58576	75522	-58576	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGATTGGCCTCCGGAAC	NA	NA	NA	NA	NA	NA	NA	NA	23486081	23417658	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_23417732_23423205_23423330_23436327_23436422_23440988_23441076_23486017
ONT_simulated_read_890910	chr8	-	1712	8	ISM	ENSMUSG00000031835.17	ENSMUST00000098362.11	4336	24	36815	0	36815	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGCTGGCATGTGTCGT	NA	NA	NA	NA	NA	NA	NA	NA	120248651	120234894	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493
ONT_simulated_read_8909836	chr9	+	606	6	ISM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	0	1495	0	-1495	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATCCAGCTCCTAGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	78099228	78115136	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082
ONT_simulated_read_8911515	chr12	-	183	2	ISM	ENSMUSG00000021094.11	ENSMUST00000021512.11	1385	7	155	9087	155	-9087	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCTAGCTTTCCAGTTA	NA	NA	NA	NA	NA	NA	NA	NA	72711528	72706213	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_72706271_72711402
ONT_simulated_read_8911592	chr7	-	511	4	ISM	ENSMUSG00000109336.2	ENST00000598913.5	2799	13	28984	4606	28873	-4606	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGCGGTTGCTGTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	28106743	28105014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_28105033_28105378_28105465_28105793_28106113_28106655
ONT_simulated_read_8912136	chr14	-	146	2	ISM	ENSMUSG00000002319.17	ENSMUST00000047131.16	3846	30	7473	2554	7473	-2554	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCCTGGCAGAGTCCATT	NA	NA	NA	NA	NA	NA	NA	NA	55865668	55865410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_55865451_55865562
ONT_simulated_read_8912635	chrX	-	1308	1	ISM	ENSMUSG00000044348.15	ENSMUST00000113069.9	3189	7	54718	1159	9450	-1153	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACTACACTAGGCTTTGA	NA	NA	NA	NA	NA	NA	NA	NA	135884331	135883023	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_135883000_135884300
ONT_simulated_read_8913562	chr6	-	2101	14	ISM	ENSMUSG00000058486.12	ENSMUST00000081214.12	2682	15	1361	376	29	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGGCCCGGCTGACACGGC	NA	NA	NA	NA	NA	NA	NA	NA	34886450	34857736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_34857904_34861118_34861317_34863000_34863114_34863742_34863852_34865888_34866058_34866171_34866267_34868321_34868473_34869275_34869470_34873115_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295
ONT_simulated_read_8914471	chr18	-	898	7	ISM	ENSMUSG00000024644.18	ENSMUST00000168419.3	2152	11	3202	1557	2223	-993	internal_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTTCAAGGTGTACATGG	NA	NA	NA	NA	NA	NA	NA	NA	84696982	84687150	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832
ONT_simulated_read_891768	chr1	-	671	1	ISM	ENSMUSG00000026566.16	ENSMUST00000068705.13	2171	5	40857	754	15882	416	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTACGATCTCACAATGAGT	NA	NA	NA	NA	NA	NA	NA	NA	165421233	165420562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_165420600_165421200
ONT_simulated_read_8922408	chr17	+	393	3	ISM	ENSMUSG00000003199.17	ENSMUST00000162883.8	1400	11	0	6283	0	-6283	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCACACACTGCAAGAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	56316207	56317363	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_56316257_56316329_56316587_56317276
ONT_simulated_read_8923932	chr11	-	704	6	ISM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	2075	1143	2075	-1143	internal_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGAGGGAGTTCCGGTC	NA	NA	NA	NA	NA	NA	NA	NA	69561068	69558904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958
ONT_simulated_read_8923958	chr7	+	635	8	ISM	ENSMUSG00000025584.18	ENST00000339708.9	2541	21	81999	16074	81999	-16074	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTCCATCTCCTAGGCTA	NA	NA	NA	NA	NA	NA	NA	NA	80945454	80967196	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_80945515_80950387_80950467_80956442_80956532_80958552_80958605_80958686_80958730_80964857_80964936_80966709_80966781_80967033
ONT_simulated_read_8924384	chr4	-	471	1	ISM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	19548	0	19548	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCTTTTGAATTGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	107091181	107090710	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_107090700_107091200
ONT_simulated_read_8926437	chr1	+	2452	14	ISM	ENSMUSG00000055567.19	ENSMUST00000212557.3	9777	64	0	174030	0	-174030	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATCGCCTGAGACACCAG	NA	NA	NA	NA	NA	NA	NA	NA	66507605	66560725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_66507698_66508622_66508672_66511134_66511292_66512389_66512692_66522399_66522524_66524923_66525001_66530150_66530291_66542688_66542951_66544081_66544217_66545788_66546006_66546484_66546626_66548425_66548695_66549708_66550084_66560613
ONT_simulated_read_8929799	chr19	+	445	5	ISM	ENSMUSG00000024911.8	ENSMUST00000025847.7	1215	10	3015	-2	3015	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGGTCCTTGTTCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	5513671	5515079	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
ONT_simulated_read_8935356	chrX	+	1097	9	ISM	ENSMUSG00000025261.19	ENST00000612484.4	13806	81	24919	60460	24919	-60460	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCCCCTGGGGGCTCAGT	NA	NA	NA	NA	NA	NA	NA	NA	150643162	150657618	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_150643265_150643664_150643746_150645293_150645401_150645647_150645826_150646868_150646961_150647557_150647770_150653454_150653513_150654475_150654653_150657528
ONT_simulated_read_8936596	chr4	-	814	1	ISM	ENSMUSG00000041936.19	ENSMUST00000105574.9	7193	35	19395	403	19395	85	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGATTTCTGATGTGG	NA	NA	NA	NA	NA	NA	NA	NA	156250963	156250149	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_156250100_156251000
ONT_simulated_read_8938692	chr5	-	307	3	ISM	ENSMUSG00000029352.15	ENST00000404334.1	496	4	678	112	678	-112	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCGAATTCCGCCACTGGA	NA	NA	NA	NA	NA	NA	NA	NA	113227745	113223883	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_113223938_113226248_113226382_113227625
ONT_simulated_read_8938964	chr2	+	427	5	ISM	ENSMUSG00000027248.14	ENSMUST00000028683.14	2770	13	333	9210	333	-9210	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGCACTCTGAATTCCTA	NA	NA	NA	NA	NA	NA	NA	NA	121244588	121259958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934
ONT_simulated_read_8939052	chr13	-	1798	6	ISM	ENSMUSG00000032621.9	ENSMUST00000210489.2	6330	10	6290	3348	6290	-1084	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTTGTATGTGCTAGTCA	NA	NA	NA	NA	NA	NA	NA	NA	103894800	103879203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_103880225_103881292_103881438_103885266_103885363_103888901_103889211_103889532_103889653_103894693
ONT_simulated_read_8941592	chr11	-	1388	10	ISM	ENSMUSG00000069631.15	ENST00000638708.1	2097	11	6408	586	4	-54	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACATTCTAGAAGGGACTT	NA	NA	NA	NA	NA	NA	NA	NA	106078004	106054727	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106077926
ONT_simulated_read_8944611	chr8	-	728	7	ISM	ENSMUSG00000079011.10	ENSMUST00000127757.8	1445	10	5892	393	5882	-393	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACACAATTAAACAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	75554683	75318007	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_75318084_75321673_75321759_75327790_75328042_75328156_75328179_75366739_75366847_75502999_75503053_75554549
ONT_simulated_read_8946244	chr8	+	1003	7	ISM	ENSMUSG00000034807.10	ENSMUST00000047903.10	3207	12	173	4271	173	-4271	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAGGAAGACTTCTGACA	NA	NA	NA	NA	NA	NA	NA	NA	72063814	72073284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_72064089_72064727_72064839_72065553_72065672_72070193_72070329_72070718_72070924_72072295_72072416_72073244
ONT_simulated_read_8947105	chr4	-	1326	1	NIC	ENSMUSG00000028378.7	novel	2296	10	NA	NA	20355	0	mono-exon	FALSE	NA	NA	NA	NA	NA	997	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGCTGTGCCTTCTCT	NA	NA	NA	NA	NA	NA	NA	NA	58966764	58965438	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_58965400_58966800
ONT_simulated_read_8954566	chr3	+	1384	3	ISM	ENSMUSG00000001419.18	ENSMUST00000107558.9	1767	11	20388	-418	20388	418	intron_retention	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAGTGGACTGAAACCCA	NA	NA	NA	NA	NA	NA	NA	NA	88070266	88076380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_88070395_88074821_88075042_88075344
ONT_simulated_read_8958210	chr8	-	380	2	ISM	ENSMUSG00000031754.11	ENSMUST00000212981.2	1184	7	14152	-43	14152	43	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCGAGGATCCTTTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	94749482	94746032	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_94746333_94749402
ONT_simulated_read_8958332	chr12	+	1647	8	ISM	ENSMUSG00000021066.10	ENSMUST00000021466.10	5150	15	53072	2515	38341	-127	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTACATGTGTTTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	69992950	70010676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_69993080_69994220_69994360_70000213_70000342_70001229_70001287_70002089_70002162_70005814_70006247_70007321_70007337_70010001
ONT_simulated_read_8958699	chr7	+	2263	14	ISM	ENSMUSG00000025584.18	ENSMUST00000026672.8	3802	22	93097	382	92985	-382	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCTAGTGTGTAACAGAGA	NA	NA	NA	NA	NA	NA	NA	NA	80956440	80983899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_80956532_80958552_80958605_80958686_80958730_80964857_80964936_80966709_80966781_80967033_80967196_80968815_80968865_80969070_80969207_80970399_80970599_80973763_80973982_80975998_80976129_80977775_80977944_80982617_80982748_80983163
ONT_simulated_read_8959789	chr11	-	1859	1	ISM	ENSMUSG00000054519.9	ENSMUST00000057799.8	3412	4	8213	1206	8213	-1206	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAGGACCAGAGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	59355087	59353228	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_59353200_59355100
ONT_simulated_read_8960171	chr11	+	681	9	ISM	ENSMUSG00000020680.16	ENST00000603777.5	1889	18	15420	2012	15420	-2012	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGGAGGTTATGGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	83379852	83395557	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_83379872_83388087_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467
ONT_simulated_read_8960338	chr10	-	1165	5	ISM	ENSMUSG00000019961.18	ENSMUST00000105293.11	1842	6	5511	134	5122	77	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTTGTGCTTCCTGTACG	NA	NA	NA	NA	NA	NA	NA	NA	91001903	90984900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_90985621_90987570_90987660_90994609_90994708_90999904_91000064_91001804
ONT_simulated_read_8962497	chr12	-	668	1	ISM	ENSMUSG00000041846.16	ENSMUST00000048305.10	4516	15	42903	684	42873	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAAGTGGGGATTTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	101007019	101006351	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_101006400_101007000
ONT_simulated_read_8964399	chr9	+	1579	4	ISM	ENSMUSG00000032469.13	ENSMUST00000066650.12	2261	8	4403	0	4403	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCCATCCTGCTGCAT	NA	NA	NA	NA	NA	NA	NA	NA	99462254	99466554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_99462417_99464074_99464156_99464369_99464516_99465364
ONT_simulated_read_8965395	chr12	-	1047	1	FSM	ENSMUSG00000093847.3	ENSMUST00000177747.2	435	1	-271	-341	-271	341	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCCTCTTACAGTGCAG	NA	NA	NA	NA	NA	NA	NA	NA	88288522	88287475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_88287500_88288500
ONT_simulated_read_8969643	chr7	-	401	1	NIC	ENSMUSG00000025102.15	novel	887	5	NA	NA	6896	0	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTAGCAGTTTCGAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	81432330	81431929	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_81431900_81432300
ONT_simulated_read_8970033	chr7	-	572	3	ISM	ENSMUSG00000030533.17	ENSMUST00000032748.15	3260	20	6054	6305	6054	-5980	internal_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACAAGGGCAGCGAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	79983913	79981347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_79981602_79982724_79982897_79983767
ONT_simulated_read_897055	chr2	+	598	1	ISM	ENSMUSG00000017760.17	ENST00000372484.8	2924	15	223	6058	25	-6021	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACCATGTAAGGCATTTC	NA	NA	NA	NA	NA	NA	NA	NA	164674845	164675443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_164674800_164675400
ONT_simulated_read_8971615	chr2	-	335	1	ISM	ENSMUSG00000068290.12	ENSMUST00000089559.11	1238	9	10365	0	10365	0	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGCCAGAAGTCCCACT	NA	NA	NA	NA	NA	NA	NA	NA	130496214	130495879	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_130495900_130496200
ONT_simulated_read_8971794	chr2	-	990	1	FSM	ENSMUSG00000079043.4	ENSMUST00000179273.2	2424	1	-59	1493	-59	-1493	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATCTTAATTTACACTGG	NA	NA	NA	NA	NA	NA	NA	NA	130458647	130457657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_130457700_130458600
ONT_simulated_read_8974158	chr11	+	2472	15	ISM	ENSMUSG00000041164.16	ENSMUST00000102914.10	3806	19	1541	836	1100	-692	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCTGATGAACTGGAAGC	NA	NA	NA	NA	NA	NA	NA	NA	6346728	6355238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_6346849_6347028_6347290_6347506_6347687_6348261_6348340_6348555_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6354989
ONT_simulated_read_89747	chr3	-	1345	4	ISM	ENSMUSG00000014599.11	ENSMUST00000120243.8	2097	9	11102	0	1839	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTTGTCCAGTAGACCG	NA	NA	NA	NA	NA	NA	NA	NA	107656456	107652910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_107653157_107654041_107654101_107654422_107654476_107655469
ONT_simulated_read_8978800	chrX	-	2315	1	ISM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	34633	0	34633	0	mono-exon	FALSE	NA	NA	NA	NA	NA	258	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATTTGCTCACATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	37510698	37508383	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_37508400_37510700
ONT_simulated_read_8978957	chr11	+	606	4	ISM	ENSMUSG00000020612.17	ENSMUST00000106677.8	3513	12	0	9542	0	-1639	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATCAGTGCTGAAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	109540230	109550940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_109540354_109541266_109541451_109544604_109544788_109550824
ONT_simulated_read_897998	chr8	+	204	1	ISM	ENSMUSG00000034361.11	ENSMUST00000048653.10	2342	16	0	37338	0	-37197	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGGGGTCCGCGGCGA	NA	NA	NA	NA	NA	NA	NA	NA	95259617	95259821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_95259600_95259800
ONT_simulated_read_898022	chr3	-	1687	11	ISM	ENSMUSG00000037922.14	ENSMUST00000196159.5	2849	16	112020	448	20696	-157	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTATTCTTCCTATTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	135919787	135759571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_135759908_135760166_135760232_135761510_135761564_135763156_135763187_135769873_135769938_135772086_135772266_135788930_135789000_135799045_135799352_135806041_135806351_135809610_135809690_135919590
ONT_simulated_read_8982065	chr10	-	2451	1	FSM	ENSMUSG00000112557.2	ENSMUST00000219916.2	3238	1	0	787	0	-787	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACATTGTAAAAATGGCTA	NA	NA	NA	NA	NA	NA	NA	NA	51865675	51863224	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_-_51863200_51865700
ONT_simulated_read_8982224	chr7	-	333	4	ISM	ENSMUSG00000101970.9	ENST00000629685.2	589	5	24	3896	24	-3896	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCGAGTCCAATAGCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	73205059	73169369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_73169457_73190519_73190653_73199344_73199401_73205002
ONT_simulated_read_8984352	chr2	-	1103	1	ISM	ENSMUSG00000002107.19	ENSMUST00000002176.13	7718	16	850348	4856	175961	257	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGATTTGATAACATGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	6550463	6549360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_6549400_6550500
ONT_simulated_read_8987770	chr15	-	1462	5	ISM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	5418	1058	5418	-1058	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	423	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTTGTTTTTCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	94482342	94476889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261
ONT_simulated_read_8988166	chr8	-	1956	1	ISM	ENSMUSG00000001910.6	ENSMUST00000001975.6	4344	6	14603	865	14603	-865	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCAGATCTGGAGACCTGT	NA	NA	NA	NA	NA	NA	NA	NA	85399928	85397972	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85398000_85399900
ONT_simulated_read_8989833	chr7	-	1019	3	ISM	ENSMUSG00000035901.15	ENST00000530044.5	4050	23	25925	26914	25925	-26914	internal_fragment	FALSE	canonical	NA	NA	NA	NA	460	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCGAGCTTCTGAGCTT	NA	NA	NA	NA	NA	NA	NA	NA	109533478	109520546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_109520719_109526033_109526222_109532819
ONT_simulated_read_8992997	chr17	-	181	1	ISM	ENSMUSG00000024056.11	ENSMUST00000024851.10	2201	17	30538	39	30488	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGATCAGACAGTTAATAA	NA	NA	NA	NA	NA	NA	NA	NA	71803314	71803133	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_71803100_71803300
ONT_simulated_read_899399	chr9	-	1962	4	ISM	ENSMUSG00000043587.16	ENSMUST00000119141.8	2768	7	49316	501	49296	-501	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTGAAGGCCAAACGACC	NA	NA	NA	NA	NA	NA	NA	NA	96722170	96706139	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_96707676_96710982_96711123_96721138_96721266_96722011
ONT_simulated_read_8994997	chr14	+	1369	3	ISM	ENSMUSG00000056234.16	ENSMUST00000111994.10	3343	10	10941	421	10941	-421	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCTCTAAGGATTTATC	NA	NA	NA	NA	NA	NA	NA	NA	31898688	31900783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_31898913_31899189_31899331_31899779
ONT_simulated_read_8996223	chr11	-	1483	4	ISM	ENSMUSG00000009894.16	ENSMUST00000010038.10	1896	5	11483	331	11483	-321	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGAGGGCCATGTCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	59329342	59298290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_59298637_59312350_59312476_59319166_59319640_59328803
ONT_simulated_read_8997805	chr13	+	882	1	ISM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	28927	0	28712	0	mono-exon	FALSE	NA	NA	NA	NA	NA	235	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGTGCTTTTTTCTTA	NA	NA	NA	NA	NA	NA	NA	NA	3616989	3617871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_3617000_3617900
ONT_simulated_read_8997966	chr11	-	3324	17	ISM	ENSMUSG00000020380.17	ENSMUST00000020649.14	5153	25	14999	321	14999	-321	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCTGGTGAAGTCCAGT	NA	NA	NA	NA	NA	NA	NA	NA	53583147	53540666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_53541483_53543060_53543195_53545703_53545847_53546359_53546446_53558848_53559074_53560456_53560585_53565524_53565639_53565729_53565823_53566728_53566840_53569691_53569886_53570216_53570344_53570859_53571050_53574028_53574267_53574952_53575129_53576976_53577135_53578921_53579105_53582939
ONT_simulated_read_8998031	chr6	-	1776	5	ISM	ENSMUSG00000034312.16	ENST00000618604.4	3232	11	4017	9597	4017	-9597	internal_fragment	FALSE	canonical	NA	NA	NA	NA	193	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACCAACGAGGACCACGT	NA	NA	NA	NA	NA	NA	NA	NA	90667811	90649027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_90649102_90653729_90653897_90655005_90655129_90657472_90657635_90666561
ONT_simulated_read_90012	chr2	+	677	1	FSM	ENSMUSG00000081272.2	ENSMUST00000119733.2	1308	1	0	631	0	-631	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGGCACAGCTGATGAAA	NA	NA	NA	NA	NA	NA	NA	NA	49198166	49198843	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_49198200_49198800
ONT_simulated_read_9003408	chr6	-	1072	1	ISM	ENSMUSG00000030110.14	ENSMUST00000032201.8	5456	20	43134	1183	43134	-1091	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTACACCCTACCCACC	NA	NA	NA	NA	NA	NA	NA	NA	118130960	118129888	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_118129900_118131000
ONT_simulated_read_900621	chr16	-	478	2	ISM	ENSMUSG00000022901.14	ENST00000393627.6	720	4	21591	117	21591	-117	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	559	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATAACATGCAGATATCAC	NA	NA	NA	NA	NA	NA	NA	NA	36441401	36438846	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_36438989_36441065
ONT_simulated_read_9007044	chr17	+	840	5	ISM	ENSMUSG00000067629.14	ENSMUST00000231853.2	4256	15	9420	453	9420	67	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	125	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCTGTGCACCCTACCCC	NA	NA	NA	NA	NA	NA	NA	NA	27181279	27189642	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_27181473_27181887_27182062_27183800_27184013_27185856_27185948_27189472
ONT_simulated_read_9008212	chr5	+	1014	2	ISM	ENSMUSG00000029195.11	ENSMUST00000031096.11	3540	5	94	11867	16	-11867	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCGACTACCCTGAGTTCA	NA	NA	NA	NA	NA	NA	NA	NA	65505750	65529483	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_65506580_65529298
ONT_simulated_read_9010762	chr19	-	363	1	ISM	ENSMUSG00000056917.14	ENSMUST00000169854.2	3583	16	12157	3	10085	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTATTTGTGTTTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	5701578	5701215	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5701200_5701600
ONT_simulated_read_901137	chr13	+	557	5	ISM	ENSMUSG00000021518.5	ENSMUST00000021990.4	3424	13	618	35033	618	-35033	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTGCATTTGGCCATT	NA	NA	NA	NA	NA	NA	NA	NA	67081511	67111432	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_67081751_67093340_67093433_67101583_67101629_67104445_67104571_67111376
ONT_simulated_read_9012507	chr5	-	1918	10	NIC	ENSMUSG00000062604.12	novel	6491	15	NA	NA	70933	-3981	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTGAACGAAAAATACTT	NA	NA	NA	NA	NA	NA	NA	NA	23750599	23712242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_23712719_23718949_23719043_23719631_23719702_23723413_23723522_23723616_23723718_23729145_23729614_23730493_23730744_23732894_23733061_23745372_23745480_23750520
ONT_simulated_read_9013140	chr9	-	1893	5	ISM	ENSMUSG00000032582.15	ENSMUST00000035201.13	3999	21	12369	59878	12361	-59874	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTTGCTTTATACTTCGG	NA	NA	NA	NA	NA	NA	NA	NA	107737659	107710635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_107710707_107724466_107724537_107728113_107728204_107729323_107730874_107737547
ONT_simulated_read_9017055	chr11	+	1670	14	ISM	ENSMUSG00000020532.19	ENSMUST00000020843.13	9026	54	85017	63114	85017	-61480	internal_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACGCCATATGTTCCATG	NA	NA	NA	NA	NA	NA	NA	NA	84171280	84229357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_84171337_84181113_84181138_84183716_84183861_84184722_84184820_84185763_84185872_84190893_84190951_84191246_84191292_84197942_84197985_84202092_84202309_84203552_84203709_84206599_84206804_84211351_84211508_84213308_84213456_84229139
ONT_simulated_read_9025921	chr4	-	536	5	ISM	ENSMUSG00000063077.16	ENSMUST00000055647.15	5992	47	62108	42076	62108	11422	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGTGCCCAAGATGACAGC	NA	NA	NA	NA	NA	NA	NA	NA	149329855	149306768	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_149306822_149307686_149307866_149309546_149309696_149310719_149310814_149329794
ONT_simulated_read_902651	chr8	-	763	6	ISM	ENSMUSG00000022322.9	ENSMUST00000022945.9	2156	13	29814	3673	29814	-3673	internal_fragment	TRUE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACCCTGACTGACAATGG	NA	NA	NA	NA	NA	NA	NA	NA	4799740	4789648	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_4789682_4791847_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551
ONT_simulated_read_9031969	chr13	-	613	1	NIC	ENSMUSG00000053216.16	novel	2226	10	NA	NA	7666	-196	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGTCCTTCAGATCACA	NA	NA	NA	NA	NA	NA	NA	NA	23662982	23662369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_23662400_23663000
ONT_simulated_read_9032439	chr16	-	557	1	ISM	ENSMUSG00000023143.11	ENSMUST00000147567.2	2230	9	7965	192	7965	-192	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAGCCACGGCACTCGCC	NA	NA	NA	NA	NA	NA	NA	NA	5013901	5013344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_5013300_5013900
ONT_simulated_read_9033179	chr18	-	850	8	ISM	ENSMUSG00000024556.5	ENSMUST00000025439.5	2638	16	17460	18530	7188	-15305	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCCCATGCGGCCCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	73931049	73921503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73927851_73928014_73929384_73929461_73930899
ONT_simulated_read_9036365	chr16	-	1600	1	ISM	ENSMUSG00000003527.10	ENSMUST00000232423.2	2785	10	9007	0	9007	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTTTCTATCAATTGT	NA	NA	NA	NA	NA	NA	NA	NA	17720172	17718572	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17718600_17720200
ONT_simulated_read_9036693	chr7	-	629	6	ISM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	14278	13843	736	2970	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGACTTTGCCTTGTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	143139515	143125286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435
ONT_simulated_read_903699	chr4	-	286	4	ISM	ENSMUSG00000028798.17	ENST00000677353.1	827	9	22	3075	22	-2864	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCCCCCTCGGGGAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	129494273	129488919	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129488980_129490666_129490733_129492747_129492836_129494201
ONT_simulated_read_904285	chr9	-	673	1	ISM	ENSMUSG00000062762.18	ENSMUST00000239021.2	2104	11	16799	438	13078	0	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAGAAAGGAGTGGGGGA	NA	NA	NA	NA	NA	NA	NA	NA	36691565	36690892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_36690900_36691600
ONT_simulated_read_90429	chr3	+	711	4	ISM	ENSMUSG00000028049.16	ENSMUST00000120697.8	1475	9	3375	0	3345	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	209	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	NA	NA	NA	NA	NA	NA	NA	89088171	89090072	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89088196_89088481_89088584_89089232_89089351_89089605
ONT_simulated_read_904495	chr2	-	936	1	FSM	ENSMUSG00000081400.2	ENSMUST00000119790.2	793	1	0	-143	0	143	mono-exon	FALSE	NA	NA	NA	NA	NA	4186	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTTTATTCAATCACAAAA	NA	NA	NA	NA	NA	NA	NA	NA	83184293	83183357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_83183400_83184300
ONT_simulated_read_9047138	chr10	-	368	1	ISM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	51715	1513	51715	-960	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTTACTTCTACCAAATAG	NA	NA	NA	NA	NA	NA	NA	NA	115035657	115035289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_115035300_115035700
ONT_simulated_read_9049508	chr5	-	564	1	ISM	ENSMUSG00000029575.18	ENSMUST00000031560.14	3020	9	10737	1726	10651	440	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGTCGGGGAAAGACAG	NA	NA	NA	NA	NA	NA	NA	NA	114571384	114570820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_114570800_114571400
ONT_simulated_read_9049634	chr14	-	1047	5	ISM	ENSMUSG00000021820.19	ENSMUST00000226630.2	1937	22	52486	-302	52486	302	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGACGCAAACACCGTGG	NA	NA	NA	NA	NA	NA	NA	NA	20791548	20786392	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20791445
ONT_simulated_read_904990	chr11	+	1179	5	ISM	ENSMUSG00000014177.11	ENSMUST00000014321.5	1784	7	4207	346	4207	-346	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATGAGAGTAATTACTT	NA	NA	NA	NA	NA	NA	NA	NA	62774487	62785665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
ONT_simulated_read_90520	chr18	-	624	2	ISM	ENSMUSG00000118057.2	ENSMUST00000235445.2	3579	4	23106	1296	23106	-1296	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTTGTTAAATTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	82356619	82355670	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_82356178_82356502
ONT_simulated_read_9054431	chr6	-	145	2	ISM	ENSMUSG00000029814.11	ENST00000619562.4	1762	8	1586	17787	1586	-16913	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGTTCCCACCCACGTC	NA	NA	NA	NA	NA	NA	NA	NA	49084378	49081191	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_49081234_49084275
ONT_simulated_read_9054614	chr12	+	332	3	ISM	ENSMUSG00000020598.17	ENST00000351718.8	5774	25	44140	9716	44140	-7838	internal_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGACCCTGAAATCCAGCC	NA	NA	NA	NA	NA	NA	NA	NA	44623386	44637786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_44623564_44636890_44637023_44637763
ONT_simulated_read_9055057	chr2	-	1272	7	ISM	ENSMUSG00000009207.16	ENSMUST00000064503.13	3195	13	30890	1374	30165	332	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGAATACTTCATCATTA	NA	NA	NA	NA	NA	NA	NA	NA	74378402	74352051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318
ONT_simulated_read_9056047	chr11	+	987	9	ISM	ENSMUSG00000020486.20	ENSMUST00000063156.11	1245	11	13	642	0	-642	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCGAGAGACACACTAC	NA	NA	NA	NA	NA	NA	NA	NA	87471899	87480559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_87472052_87474746_87474841_87475224_87475312_87475943_87476068_87479543_87479679_87479793_87479912_87480000_87480103_87480293_87480391_87480481
ONT_simulated_read_906112	chr4	-	1557	13	FSM	ENSMUSG00000045205.17	ENST00000456901.1	1568	13	11	0	11	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAATCTTGACAAATAACA	NA	NA	NA	NA	NA	NA	NA	NA	11317152	11265788	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_11265943_11281003_11281125_11285053_11285174_11287474_11287634_11289669_11289744_11290190_11290290_11290390_11290523_11292553_11292689_11295935_11296060_11303311_11303458_11303946_11304069_11304299_11304391_11317072
ONT_simulated_read_906139	chr13	-	1669	4	ISM	ENSMUSG00000021687.15	ENSMUST00000153558.8	1255	8	21504	-872	21504	499	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTTCTTAATGTACCTG	NA	NA	NA	NA	NA	NA	NA	NA	94361562	94339382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_94340672_94344643_94344762_94347084_94347187_94361402
ONT_simulated_read_9062489	chr12	+	2575	24	ISM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	0	7908	0	-7907	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGGGCCAGGGGGCCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	76302071	76358669	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579
ONT_simulated_read_9064308	chr10	+	1255	8	ISM	ENSMUSG00000020034.8	ENSMUST00000020223.8	2725	10	271	9440	271	-9440	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTCAGAAAAGCTCAATCAA	NA	NA	NA	NA	NA	NA	NA	NA	84412760	84440783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_84412877_84420611_84420920_84422967_84423104_84425747_84425869_84426951_84427173_84430511_84430649_84440370_84440553_84440749
ONT_simulated_read_9065001	chr11	-	1429	5	ISM	ENSMUSG00000057181.16	ENSMUST00000179332.8	4536	10	7611	2478	7611	-2477	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGGCTGGAGAGGCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	80261230	80253795	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_80254845_80255661_80255766_80258887_80259025_80259353_80259419_80261156
ONT_simulated_read_9066053	chr1	-	202	1	ISM	ENSMUSG00000009418.17	ENSMUST00000040599.15	12767	30	562	150012	562	-145744	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGACCTAGAACAGCTACT	NA	NA	NA	NA	NA	NA	NA	NA	135512531	135512329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_135512300_135512500
ONT_simulated_read_9071969	chr7	+	627	5	ISM	ENSMUSG00000039202.13	ENSMUST00000037315.13	6877	11	55	40010	55	-40010	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCGTTGACTATGCCCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	78923001	78975246	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_78923088_78944255_78944356_78946755_78946956_78973216_78973393_78975181
ONT_simulated_read_9072905	chr16	+	1204	11	ISM	ENSMUSG00000022761.13	ENSMUST00000023444.11	3394	21	315	4850	0	-4319	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGCCATGTACATCTT	NA	NA	NA	NA	NA	NA	NA	NA	17326866	17339347	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337250_17337391_17338299_17338502_17338754_17338911_17339308
ONT_simulated_read_907387	chr16	-	1537	11	ISM	ENSMUSG00000022771.18	ENSMUST00000023455.14	2333	21	18170	0	18126	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCGTTCATGACCTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	16910951	16904418	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874
ONT_simulated_read_9074220	chr2	-	1279	7	ISM	ENSMUSG00000036352.17	ENSMUST00000036509.14	1852	10	11145	0	11145	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	126	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTGTTACTTCATGGC	NA	NA	NA	NA	NA	NA	NA	NA	25900614	25888554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25889080_25895337_25895477_25896538_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533
ONT_simulated_read_9074781	chr11	-	221	3	ISM	ENSMUSG00000020311.18	ENST00000378239.5	2196	13	11074	4056	11074	-4056	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTGACTGTAAAACTAAAG	NA	NA	NA	NA	NA	NA	NA	NA	30893075	30885000	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_30885060_30889496_30889622_30893038
ONT_simulated_read_9076714	chr1	-	750	4	ISM	ENSMUSG00000026484.14	ENSMUST00000187048.7	3201	8	23787	2297	1599	-1	internal_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGATACAGCCAGTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	151352775	151347452	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_151347561_151348822_151349096_151351890_151352107_151352622
ONT_simulated_read_9077435	chr16	+	1625	13	ISM	ENSMUSG00000045983.17	ENSMUST00000115460.8	5638	32	10279	3829	10279	-3496	internal_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCCAGGGGAGTGGTGG	NA	NA	NA	NA	NA	NA	NA	NA	20502545	20507802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720
ONT_simulated_read_9082359	chr17	+	2013	14	ISM	ENSMUSG00000023800.16	ENST00000456877.6	3054	20	17020	112	17020	-112	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGCCAGCATTGATCTAAA	NA	NA	NA	NA	NA	NA	NA	NA	3504520	3568889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_3504627_3527449_3527554_3553155_3553336_3555982_3556052_3557041_3557168_3557983_3558093_3559675_3559856_3561331_3561451_3563121_3563231_3563665_3563725_3564945_3565052_3566244_3566333_3566837_3566993_3568386
ONT_simulated_read_908239	chr10	-	357	4	ISM	ENSMUSG00000058806.16	ENST00000673842.1	2189	28	129671	-2	129425	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	335	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTTCTAATACACTTTC	NA	NA	NA	NA	NA	NA	NA	NA	61684990	61674292	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_61674488_61675856_61675896_61679346_61679434_61684954
ONT_simulated_read_9083763	chr4	+	152	1	Antisense	novelGene_ENSMUSG00000028234.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	254	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAGGAATGTAAATTTAAT	NA	NA	NA	NA	NA	NA	NA	NA	3834682	3834834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr4_+_3834700_3834800
ONT_simulated_read_908403	chr2	+	1748	18	ISM	ENSMUSG00000058740.15	ENST00000490355.6	3707	31	0	14330	0	-14330	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAGAGTATCCTGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	25767892	25791799	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_25768048_25772207_25772250_25778080_25778161_25778770_25778871_25780860_25780918_25781202_25781252_25782069_25782130_25782345_25782421_25782485_25782570_25783140_25783236_25784293_25784475_25788282_25788448_25788710_25788848_25790234_25790299_25790383_25790493_25790900_25791010_25791220_25791371_25791763
ONT_simulated_read_908559	chr19	+	2434	19	ISM	ENSMUSG00000024740.11	ENST00000681935.1	4113	27	59	5012	0	-4515	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGTGGAGGTGCACAACC	NA	NA	NA	NA	NA	NA	NA	NA	10582986	10602161	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087
ONT_simulated_read_908875	chrX	+	789	1	ISM	ENSMUSG00000031375.18	ENSMUST00000033741.15	2419	8	11290	253	11257	-249	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGGAAAGGGTTCATACTC	NA	NA	NA	NA	NA	NA	NA	NA	72538497	72539286	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_72538500_72539300
ONT_simulated_read_9088993	chr2	-	720	7	ISM	ENSMUSG00000026958.14	ENSMUST00000028332.8	1682	13	1726	196	1726	-196	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCCAGACTAAAGCAACCAG	NA	NA	NA	NA	NA	NA	NA	NA	25244645	25242497	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25243619_25243739_25244244_25244306_25244479
ONT_simulated_read_9089732	chr1	-	756	4	ISM	ENSMUSG00000026603.14	ENSMUST00000027897.8	1680	12	36968	0	36968	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGTTTCTGAATGTCT	NA	NA	NA	NA	NA	NA	NA	NA	189617592	189612688	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_189613064_189614305_189614415_189616020_189616196_189617495
ONT_simulated_read_9091519	chr18	-	439	1	FSM	ENSMUSG00000118283.2	ENSMUST00000238105.2	556	1	0	117	0	-117	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTGAACTGTTACAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	86261645	86261206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr18_-_86261200_86261600
ONT_simulated_read_9092123	chr4	-	1593	3	ISM	ENSMUSG00000041193.16	ENSMUST00000102511.2	690	5	7516	-1034	7516	-70	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATCTATATTTAGAGACCT	NA	NA	NA	NA	NA	NA	NA	NA	138531960	138526629	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_138527973_138528662_138528770_138531817
ONT_simulated_read_9093046	chr16	+	2306	23	ISM	ENSMUSG00000022770.18	ENST00000656087.1	4243	25	19449	1613	19446	-60	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATCATCGAAGAACAGTC	NA	NA	NA	NA	NA	NA	NA	NA	31503083	31690539	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_31503113_31561923_31562089_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31666453_31666488_31672660_31672703_31673470_31673507_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ONT_simulated_read_9093623	chr6	-	1668	1	ISM	ENSMUSG00000034832.16	ENSMUST00000089622.11	10904	11	71862	5773	71862	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATCCCTACCCGGCAGGCG	NA	NA	NA	NA	NA	NA	NA	NA	83346795	83345127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_83345100_83346800
ONT_simulated_read_9094855	chr4	-	338	1	NIC	ENSMUSG00000028873.17	novel	1626	10	NA	NA	17656	-229	mono-exon	FALSE	NA	NA	NA	NA	NA	247	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCGGGCCCAGGCAGGCT	NA	NA	NA	NA	NA	NA	NA	NA	124812824	124812486	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_124812500_124812800
ONT_simulated_read_9095997	chr9	+	1086	1	NIC	ENSMUSG00000041064.15	novel	3395	13	NA	NA	0	-7656	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCCAGAGGAACTGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	65494502	65495588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr9_+_65494500_65495600
ONT_simulated_read_9096239	chr6	+	763	1	ISM	ENSMUSG00000003031.15	ENSMUST00000067327.11	4552	2	112	4238	0	-3407	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTCTCAGGCAAACTCTG	NA	NA	NA	NA	NA	NA	NA	NA	134897475	134898238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_134897500_134898200
ONT_simulated_read_9101303	chr8	-	1352	7	NNC	ENSMUSG00000031781.15	novel	4359	9	NA	NA	52	111	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACAGGAGTGGGGCCAGA	NA	NA	NA	NA	NA	NA	NA	NA	95558490	95549077	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553332_95554904_95555068_95555781_95555859_95558400
ONT_simulated_read_9101644	chr5	-	612	1	NIC	ENSMUSG00000046658.17	novel	6891	7	NA	NA	9090	-1746	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTCCTACTTGGTGACCCA	NA	NA	NA	NA	NA	NA	NA	NA	143241321	143240709	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_143240700_143241300
ONT_simulated_read_9102183	chr5	-	479	1	FSM	ENSMUSG00000105143.2	ENSMUST00000197887.2	154	1	0	-325	0	325	mono-exon	FALSE	NA	NA	NA	NA	NA	258	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTTTGGAAGTCAGCATA	NA	NA	NA	NA	NA	NA	NA	NA	54809463	54808984	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_54809000_54809500
ONT_simulated_read_9102259	chr3	+	2085	1	FSM	ENSMUSG00000044528.6	ENSMUST00000058994.6	3889	1	0	1804	0	-1804	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTTTATTTTAAACACT	NA	NA	NA	NA	NA	NA	NA	NA	124114503	124116588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_124114500_124116600
ONT_simulated_read_9103620	chr5	-	398	1	ISM	ENSMUSG00000037379.8	ENSMUST00000046186.8	2045	6	3813	318	3813	-318	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGGTTTGATCTACATAA	NA	NA	NA	NA	NA	NA	NA	NA	33371986	33371588	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_33371600_33372000
ONT_simulated_read_9106122	chr2	-	1533	5	ISM	ENSMUSG00000027014.15	ENSMUST00000111821.9	3388	20	39134	0	38961	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCAGTGAGGTACTCTG	NA	NA	NA	NA	NA	NA	NA	NA	77737563	77725996	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425
ONT_simulated_read_9107429	chr15	-	1487	7	ISM	ENSMUSG00000033055.13	ENST00000406423.5	627	8	17251	-905	1673	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTTTTTGTGTTTTTG	NA	NA	NA	NA	NA	NA	NA	NA	78945412	78937293	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_78938285_78938695_78938804_78939491_78939617_78939694_78939743_78940213_78940286_78942154_78942249_78945363
ONT_simulated_read_9113941	chrX	-	1138	5	FSM	ENSMUSG00000031137.18	ENST00000441825.8	1291	5	29	124	29	-124	multi-exon	FALSE	canonical	NA	NA	NA	NA	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTGGCTTCGTGTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	58296297	58108444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_58109030_58112760_58112960_58171253_58171358_58177199_58177311_58296158
ONT_simulated_read_911566	chr17	-	751	6	ISM	ENSMUSG00000073436.12	ENSMUST00000121542.2	1521	8	902	328	870	-328	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTACAACAGGACAAGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	25113159	25111453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_25111658_25111728_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104
ONT_simulated_read_9120816	chr7	-	838	1	ISM	ENSMUSG00000011751.17	ENST00000352632.7	8601	35	85146	209	37077	-203	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTAAATGCCACTTCCC	NA	NA	NA	NA	NA	NA	NA	NA	27056854	27056016	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_27056000_27056900
ONT_simulated_read_9120967	chr8	-	692	1	ISM	ENSMUSG00000033732.11	ENSMUST00000042012.7	4525	26	35707	139	35707	-139	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGTGGACATCATGGC	NA	NA	NA	NA	NA	NA	NA	NA	111537701	111537009	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_111537000_111537700
ONT_simulated_read_9123651	chr10	-	157	1	Antisense	novelGene_ENSMUSG00000019831.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCACTCTCCCCTCGAACC	NA	NA	NA	NA	NA	NA	NA	NA	40759832	40759675	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr10_-_40759700_40759800
ONT_simulated_read_9125714	chr2	-	3414	1	ISM	ENSMUSG00000068134.14	ENSMUST00000109931.8	4033	3	18510	349	18474	-349	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCTGTTTGCATTCTA	NA	NA	NA	NA	NA	NA	NA	NA	149960088	149956674	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_149956700_149960100
ONT_simulated_read_912586	chr16	-	269	3	ISM	ENSMUSG00000022956.12	ENSMUST00000023677.10	838	7	4705	388	4705	-388	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAAGACGGTGCTGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	91723870	91722489	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_91722516_91723346_91723460_91723740
ONT_simulated_read_9125967	chr5	-	1465	6	ISM	ENSMUSG00000035234.19	ENSMUST00000117364.8	1657	10	5655	457	5655	-457	internal_fragment	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTGAGGGGTGCATTGGG	NA	NA	NA	NA	NA	NA	NA	NA	100963151	100953525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027
ONT_simulated_read_9128706	chr13	-	1324	13	ISM	ENSMUSG00000021546.19	ENSMUST00000177019.8	2626	15	2473	1146	431	-435	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAGTGAAGAACTGAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	58547805	58540198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706
ONT_simulated_read_9132956	chr11	-	168	2	ISM	ENSMUSG00000020439.18	ENST00000358743.5	3013	20	16471	206	7021	-206	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAACCACCTGCGGCGCC	NA	NA	NA	NA	NA	NA	NA	NA	3470916	3467728	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_3467828_3470847
ONT_simulated_read_9133216	chr16	-	3546	6	ISM	ENSMUSG00000034473.15	ENSMUST00000043521.5	3992	7	2157	353	0	-353	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCGGTGTCCAGAAGCTAG	NA	NA	NA	NA	NA	NA	NA	NA	35182131	35131853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_35134658_35139173_35139240_35149867_35149984_35167968_35168164_35169200_35169365_35181930
ONT_simulated_read_9135412	chr7	-	2769	1	ISM	ENSMUSG00000025139.15	ENSMUST00000001950.12	3788	6	17916	220	17737	-220	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCCCAGGCCACCCTTT	NA	NA	NA	NA	NA	NA	NA	NA	141438308	141435539	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_141435500_141438300
ONT_simulated_read_9135735	chr11	+	427	1	FSM	ENSMUSG00000082045.5	ENSMUST00000120901.2	569	1	0	142	0	-142	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATCATTGACGGACTTC	NA	NA	NA	NA	NA	NA	NA	NA	102014897	102015324	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr11_+_102014900_102015300
ONT_simulated_read_9136013	chr6	-	1197	1	NIC	ENSMUSG00000004267.17	novel	2386	10	NA	NA	8157	-112	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTAGCCCTGGCTGTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	124738326	124737129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_124737100_124738300
ONT_simulated_read_9136972	chr14	-	1075	14	ISM	ENSMUSG00000004558.16	ENST00000553503.5	2130	17	1787	863	-750	-369	internal_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAATGACCCTCATTGCC	NA	NA	NA	NA	NA	NA	NA	NA	52149003	52143601	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922
ONT_simulated_read_9140702	chr17	+	957	4	ISM	ENSMUSG00000023921.10	ENSMUST00000169611.4	3674	13	0	20598	0	-20598	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCCTATACCATCGCAGA	NA	NA	NA	NA	NA	NA	NA	NA	41245575	41252281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_41245671_41247934_41248354_41249405_41249774_41252206
ONT_simulated_read_9141068	chr2	-	2253	1	ISM	ENSMUSG00000039501.15	ENSMUST00000048988.14	7218	14	23865	1105	4345	-1099	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGCCATGCAAAGGAGTACC	NA	NA	NA	NA	NA	NA	NA	NA	166881070	166878817	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_166878800_166881100
ONT_simulated_read_9141445	chr5	+	1274	7	ISM	ENSMUSG00000038023.13	ENSMUST00000037865.13	5345	20	24089	2316	24089	-2316	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACTTAAAAAAAAAGAAACA	NA	NA	NA	NA	NA	NA	NA	NA	124791205	124799203	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_124791297_124793368_124793580_124794949_124795070_124795502_124795623_124796112_124796231_124796914_124797087_124798761
ONT_simulated_read_9141978	chr16	-	4186	1	ISM	ENSMUSG00000022799.5	ENSMUST00000023487.5	7964	12	109485	1264	109485	-1264	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCAATGTCGGTGTATGC	NA	NA	NA	NA	NA	NA	NA	NA	38424151	38419965	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_38420000_38424200
ONT_simulated_read_9142237	chr7	-	852	1	FSM	ENSMUSG00000070520.5	ENSMUST00000094331.5	5946	1	0	5094	0	-5094	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTTGGCAGATGAGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	64522745	64521893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_-_64521900_64522700
ONT_simulated_read_9144377	chr13	+	656	1	FSM	ENSMUSG00002075877.1	ENSMUST00020183356.1	84	1	0	-572	0	572	mono-exon	FALSE	NA	NA	NA	NA	NA	436	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGCACCACTGAGTGATC	NA	NA	NA	NA	NA	NA	NA	NA	81213595	81214251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_+_81213600_81214300
ONT_simulated_read_9144685	chr15	-	1427	1	ISM	ENSMUSG00000116138.2	ENSMUST00000036247.10	1754	3	871	78	871	-78	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATGTCCTGAGATCTAGG	NA	NA	NA	NA	NA	NA	NA	NA	76607169	76605742	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_76605700_76607200
ONT_simulated_read_9145278	chr9	+	777	4	ISM	ENSMUSG00000032377.9	ENSMUST00000034941.9	3204	9	21	9709	21	-9709	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAATCCAGTACCAACCTG	NA	NA	NA	NA	NA	NA	NA	NA	92339446	92364800	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_92339979_92353773_92353802_92354954_92355066_92364694
ONT_simulated_read_914921	chr6	-	1686	1	NIC	ENSMUSG00000085589.8	novel	2233	5	NA	NA	8340	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAAAAAAAAAC	NA	NA	NA	NA	NA	NA	NA	NA	86449472	86447786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_86447800_86449500
ONT_simulated_read_9149533	chr19	-	272	3	ISM	ENSMUSG00000056629.17	ENSMUST00000238181.2	1526	6	1813	0	1813	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCCAAGAGTGAGTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	6955805	6955114	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_6955303_6955378_6955415_6955757
ONT_simulated_read_9149981	chr2	-	375	1	ISM	ENSMUSG00000039826.14	ENSMUST00000048044.12	3408	8	247	11771	247	-10124	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCCTGGGATATATGAGA	NA	NA	NA	NA	NA	NA	NA	NA	29678267	29677892	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_29677900_29678300
ONT_simulated_read_9150253	chr7	-	801	4	ISM	ENSMUSG00000061479.16	ENSMUST00000163311.9	1288	6	3979	-2	3979	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTTGTCTGCTTTATTT	NA	NA	NA	NA	NA	NA	NA	NA	26891206	26886429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028
ONT_simulated_read_9150931	chr1	+	794	5	ISM	ENSMUSG00000026315.14	ENSMUST00000112706.4	4581	7	0	5808	0	-4233	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCAAAGGGAAGTGGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	107517735	107532406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_107518018_107525184_107525368_107526629_107526768_107530529_107530648_107532333
ONT_simulated_read_9151004	chr11	+	1150	6	ISM	ENSMUSG00000038976.13	ENSMUST00000107748.2	3095	9	0	4790	0	-4790	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCCAGCAGCTGAAACGG	NA	NA	NA	NA	NA	NA	NA	NA	94886889	94892935	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_94887494_94888819_94888941_94891032_94891138_94892044_94892181_94892667_94892821_94892904
ONT_simulated_read_9153275	chr2	-	758	8	ISM	ENSMUSG00000026727.11	ENSMUST00000028059.9	1546	9	124	93054	42	46718	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCTGACCAGTTCCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	13276102	13174876	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
ONT_simulated_read_9154077	chr7	+	1326	12	ISM	ENSMUSG00000051768.10	ENSMUST00000063249.9	2155	17	183	2933	31	-2833	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAACCCCAAAAGAGACCAA	NA	NA	NA	NA	NA	NA	NA	NA	24246757	24269930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265719_24265813_24265926_24266282_24266393_24266463_24266570_24266738_24266998_24267234_24267352_24269640_24269735_24269873
ONT_simulated_read_9155448	chr11	-	757	7	ISM	ENSMUSG00000017631.20	ENSMUST00000065028.14	4444	18	9118	35121	9118	-27734	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCAAGGGGCAGATCCAGG	NA	NA	NA	NA	NA	NA	NA	NA	76350173	76342697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_76342811_76343156_76343255_76345341_76345417_76346434_76346540_76346986_76347063_76347425_76347549_76350006
ONT_simulated_read_9159938	chr14	-	1536	1	ISM	ENSMUSG00000035161.8	ENSMUST00000053959.7	4993	19	82945	302	82945	-302	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGACCCTTTAACACA	NA	NA	NA	NA	NA	NA	NA	NA	62915616	62914080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_62914100_62915600
ONT_simulated_read_9163617	chr17	-	394	1	NIC	ENSMUSG00000071256.5	novel	2686	6	NA	NA	5925	-1153	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTCCGAATGTGGCAAG	NA	NA	NA	NA	NA	NA	NA	NA	23777287	23776893	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_23776900_23777300
ONT_simulated_read_9163731	chr16	-	1333	11	ISM	ENSMUSG00000022788.17	ENST00000682739.1	2747	17	85871	233	29838	-133	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATGAGGAACTGAAACAGA	NA	NA	NA	NA	NA	NA	NA	NA	16292248	16240559	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_16240685_16241779_16241921_16243630_16243772_16253804_16253931_16254396_16254490_16254873_16254905_16271855_16272029_16279457_16279605_16279864_16279924_16287567_16287707_16292090
ONT_simulated_read_916377	chr1	+	1657	1	ISM	ENSMUSG00000046062.6	ENSMUST00000052529.4	5594	2	201	6783	201	-6783	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGACTTGGAAGCCAGCTC	NA	NA	NA	NA	NA	NA	NA	NA	133059081	133060738	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_133059100_133060700
ONT_simulated_read_9164389	chr4	-	770	1	ISM	ENSMUSG00000028878.12	ENSMUST00000030696.11	3053	9	21274	1302	21169	-108	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGGCGTACGTGTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	132628595	132627825	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_132627800_132628600
ONT_simulated_read_9167613	chr4	+	317	3	ISM	ENSMUSG00000042489.16	ENST00000251195.9	3969	24	9534	18523	9455	-18523	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAGATGGATTTGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	126460347	126467026	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_126460375_126466071_126466264_126466928
ONT_simulated_read_9171433	chr1	-	481	4	ISM	ENSMUSG00000026558.14	ENSMUST00000053686.9	4731	7	50485	3449	50485	-3449	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGTCGAGAGGCTCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	167062404	167053900	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260
ONT_simulated_read_9171462	chr3	-	833	6	ISM	ENSMUSG00000068739.14	ENST00000369923.4	1860	12	15675	275	15675	-250	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGCAGAGCATGGAGGTC	NA	NA	NA	NA	NA	NA	NA	NA	108336779	108334177	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_108334298_108334575_108334706_108335176_108335249_108335489_108335648_108335921_108336052_108336556
ONT_simulated_read_9172339	chr8	-	1553	5	ISM	ENSMUSG00000031601.17	ENSMUST00000135269.8	2461	6	1452	769	1038	-280	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTGAAGAATTTCAAACCA	NA	NA	NA	NA	NA	NA	NA	NA	40963307	40946356	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_40947157_40952335_40952481_40953792_40953955_40960495_40960690_40963055
ONT_simulated_read_9175948	chr7	-	1690	1	ISM	ENSMUSG00000030788.17	ENSMUST00000177236.8	4032	6	27622	1615	20694	0	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCTACATATTATTAATA	NA	NA	NA	NA	NA	NA	NA	NA	110416042	110414352	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_110414400_110416000
ONT_simulated_read_9176178	chr6	-	1423	3	ISM	ENSMUSG00000030226.13	ENSMUST00000163065.8	2425	4	4827	766	4827	3	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCCGTGGTTAATGAGC	NA	NA	NA	NA	NA	NA	NA	NA	138393623	138341959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_138343046_138354197_138354324_138393412
ONT_simulated_read_9176283	chr1	-	1748	10	ISM	ENSMUSG00000041303.8	ENSMUST00000041638.8	4582	18	18480	1667	18480	-1667	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGAATATATGCAAAGTT	NA	NA	NA	NA	NA	NA	NA	NA	54459650	54436829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_54437162_54438287_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554
ONT_simulated_read_9178256	chr2	-	1293	9	ISM	ENSMUSG00000037376.15	ENST00000453074.6	2058	10	3882	511	3879	-511	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTAATTACACTTTAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	132654095	132647300	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652125_132652210_132652336_132652429_132653967
ONT_simulated_read_9179559	chr4	-	1781	9	ISM	ENSMUSG00000028223.9	ENSMUST00000029877.9	2959	10	12441	924	12441	-924	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGGACACATCACACCGT	NA	NA	NA	NA	NA	NA	NA	NA	15933066	15918163	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_15919095_15919193_15919257_15919831_15919979_15922484_15922558_15924253_15924354_15929726_15929875_15930913_15931001_15931124_15931183_15932892
ONT_simulated_read_9179647	chr2	-	1082	1	ISM	ENSMUSG00000053141.17	ENSMUST00000109445.9	12082	30	1131581	6495	398215	-848	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTGAACACATGAAATGGG	NA	NA	NA	NA	NA	NA	NA	NA	161371486	161370404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_161370400_161371500
ONT_simulated_read_9180769	chr15	-	573	1	ISM	ENSMUSG00000050014.9	ENSMUST00000089465.6	2325	4	10356	1378	10356	-1378	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTGTTCTCCCAATGACCA	NA	NA	NA	NA	NA	NA	NA	NA	77469969	77469396	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_77469400_77470000
ONT_simulated_read_9181565	chr11	-	672	1	ISM	ENSMUSG00000020451.18	ENSMUST00000110029.9	2939	12	10282	932	10282	574	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTACAGAATCCAACAAAGG	NA	NA	NA	NA	NA	NA	NA	NA	3295859	3295187	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_3295200_3295900
ONT_simulated_read_9181891	chr13	-	1957	1	ISM	ENSMUSG00000097333.8	ENSMUST00000181767.8	2656	4	8065	375	8034	-375	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCCTCTGACTGTCGA	NA	NA	NA	NA	NA	NA	NA	NA	67666231	67664274	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_67664300_67666200
ONT_simulated_read_9182235	chr9	-	1070	6	ISM	ENSMUSG00000047766.16	ENSMUST00000053171.14	3086	10	39402	18480	39402	-413	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCGAAGTTTGGTAAGAT	NA	NA	NA	NA	NA	NA	NA	NA	60517682	60494934	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540
ONT_simulated_read_9185227	chr6	-	215	2	ISM	ENSMUSG00000030216.13	ENSMUST00000116514.4	2739	12	6886	7001	6886	-7001	internal_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGCTATCCTGAGGACAT	NA	NA	NA	NA	NA	NA	NA	NA	136798345	136797652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_136797697_136798174
ONT_simulated_read_9186974	chr12	+	1255	12	ISM	ENSMUSG00000021013.17	ENSMUST00000079146.13	2270	15	22707	676	22651	-670	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGCTCTGATCAGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	98909577	98948821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_98909626_98909720_98909881_98910083_98910174_98912827_98912873_98923539_98923626_98927660_98927749_98930755_98930867_98940900_98941041_98942235_98942411_98942685_98942809_98946060_98946145_98948716
ONT_simulated_read_9188355	chr1	-	1099	7	ISM	ENSMUSG00000026618.12	ENSMUST00000027921.11	5471	23	33732	2198	33732	-2198	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGATGGGGTAAGAATCA	NA	NA	NA	NA	NA	NA	NA	NA	185027861	185019120	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_185019389_185020236_185020382_185021549_185021741_185022682_185022829_185023515_185023623_185026940_185027073_185027751
ONT_simulated_read_9190495	chr13	-	1201	1	FSM	ENSMUSG00000052957.9	ENSMUST00000223933.2	1155	1	235	-281	235	281	mono-exon	FALSE	NA	NA	NA	NA	NA	783	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGTGGGGGTCTTTCAAG	NA	NA	NA	NA	NA	NA	NA	NA	60324520	60323319	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_60323300_60324500
ONT_simulated_read_9192293	chr8	+	319	4	ISM	ENSMUSG00000038604.10	ENST00000428437.6	4031	20	1120	6085	1120	-6071	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGGGCGATCAATAT	NA	NA	NA	NA	NA	NA	NA	NA	106342148	106342780	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_106342230_106342344_106342498_106342610_106342675_106342759
ONT_simulated_read_9193335	chr7	-	626	1	ISM	ENSMUSG00000045757.7	ENSMUST00000059199.7	2508	3	1189	1340	1189	-1340	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACCCCCTTCACTTGCA	NA	NA	NA	NA	NA	NA	NA	NA	127004805	127004179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_127004200_127004800
ONT_simulated_read_9194894	chr17	+	612	5	ISM	ENSMUSG00000024392.18	ENST00000375976.8	3482	24	9775	-6	9775	-1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTCGAGTACCTTTTCT	NA	NA	NA	NA	NA	NA	NA	NA	35364863	35366295	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ONT_simulated_read_9195769	chr11	-	1361	12	ISM	ENSMUSG00000040667.12	ENSMUST00000108531.8	2453	17	13681	180	13662	-150	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAATGAACATAACTTGAA	NA	NA	NA	NA	NA	NA	NA	NA	70847118	70834077	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961
ONT_simulated_read_9199208	chr16	-	1488	7	ISM	ENSMUSG00000022898.14	ENSMUST00000023615.7	2547	8	14456	567	14065	-567	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	256	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTTGCATAAGGGGAAGAA	NA	NA	NA	NA	NA	NA	NA	NA	94313233	94299208	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_94299942_94302393_94302547_94302940_94303092_94305160_94305236_94306222_94306304_94311596_94311747_94313088
ONT_simulated_read_9201371	chr5	-	366	2	ISM	ENSMUSG00000029229.9	ENST00000512964.5	696	5	33008	0	33008	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTATTCTCAAAAAAAATACA	NA	NA	NA	NA	NA	NA	NA	NA	75171951	75167118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_75167425_75171891
ONT_simulated_read_9203408	chr13	-	452	1	ISM	ENSMUSG00000042364.12	ENSMUST00000109241.5	4447	2	23738	2196	23591	393	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAACTTTTGGATAATGA	NA	NA	NA	NA	NA	NA	NA	NA	113731362	113730910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_113730900_113731400
ONT_simulated_read_920443	chr5	-	1530	1	ISM	ENSMUSG00000039987.16	ENSMUST00000118174.8	4840	18	121089	843	94164	-737	mono-exon	FALSE	NA	NA	NA	NA	NA	229	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTGTATAGGAAACGGCA	NA	NA	NA	NA	NA	NA	NA	NA	20966033	20964503	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_20964500_20966000
ONT_simulated_read_9205245	chr16	+	648	6	ISM	ENSMUSG00000005982.15	ENSMUST00000186375.8	2350	7	86	2956	0	0	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACCTGAGCCCCTGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	3702632	3719678	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646
ONT_simulated_read_920573	chr10	-	680	6	ISM	ENSMUSG00000040043.18	ENSMUST00000092033.4	1481	13	38771	0	38727	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGCAGTGCTGTGAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	127973577	127968975	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529
ONT_simulated_read_9205894	chr5	-	748	1	ISM	ENSMUSG00000029189.11	ENST00000399878.8	4511	24	105309	312	92330	-312	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTACCGTTTAAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	53265484	53264736	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_53264700_53265500
ONT_simulated_read_9207260	chr2	-	1600	1	ISM	ENSMUSG00000055371.18	ENSMUST00000102759.8	4717	14	47279	1658	47279	-1658	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAGTATGTTTTTTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	52584933	52583333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_52583300_52584900
ONT_simulated_read_9221914	chr17	+	2393	10	ISM	ENSMUSG00000002835.10	ENSMUST00000002914.10	5535	14	17304	2084	17304	-2084	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGCCAGCCCTTCAACGG	NA	NA	NA	NA	NA	NA	NA	NA	56364742	56375192	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_56364921_56365983_56366066_56366257_56366327_56369084_56369312_56369550_56369720_56369810_56369892_56370327_56370421_56371000_56371257_56371973_56372426_56374406
ONT_simulated_read_9225018	chr15	-	987	1	ISM	ENSMUSG00000022391.17	ENSMUST00000170134.9	2984	17	24662	5	24623	0	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	81589440	81588453	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_81588500_81589400
ONT_simulated_read_9225414	chr13	-	765	7	ISM	ENSMUSG00000045410.19	ENSMUST00000110691.10	3288	9	7821	2374	1446	125	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAGAGTAAGAACAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	4651352	4643129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_4643298_4643560_4643644_4645069_4645154_4645658_4645732_4647483_4647582_4648768_4648892_4651216
ONT_simulated_read_9228823	chr10	-	1009	7	ISM	ENSMUSG00000019795.18	ENSMUST00000162606.8	2757	8	14453	1214	14148	-1206	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTTTAGCTTCTTTGGTA	NA	NA	NA	NA	NA	NA	NA	NA	7524919	7506350	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814
ONT_simulated_read_9229456	chr17	-	2036	4	ISM	ENSMUSG00000023951.19	ENSMUST00000024747.14	2765	6	6287	140	5828	-140	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACATCACGTCTTTGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	46336454	46328058	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_46329806_46334990_46335021_46335369_46335447_46336272
ONT_simulated_read_9229514	chr18	-	2490	3	ISM	ENSMUSG00000050945.9	ENST00000413025.5	2826	4	43484	193	43484	146	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	728	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGCCAGGGCCAGTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	5245429	5210553	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_5211199_5213118_5214920_5245385
ONT_simulated_read_9231991	chr2	-	994	8	ISM	ENSMUSG00000017664.17	ENSMUST00000109299.8	1926	10	4851	544	4851	-544	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATCTTGGCCAGGTCCAG	NA	NA	NA	NA	NA	NA	NA	NA	165124824	165119017	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702
ONT_simulated_read_923568	chrX	+	580	6	ISM	ENSMUSG00000034311.4	ENST00000374403.4	4323	30	85673	9279	85673	-9221	internal_fragment	TRUE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGTCTCCAGACTCTTC	NA	NA	NA	NA	NA	NA	NA	NA	99755732	99761599	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_99755769_99757483_99757614_99759186_99759358_99759876_99759985_99760936_99761015_99761542
ONT_simulated_read_9236223	chr4	-	665	3	ISM	ENSMUSG00000096351.3	ENSMUST00000217934.2	2413	10	6238	984	6238	-429	internal_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTGACAGAAGAGCACCT	NA	NA	NA	NA	NA	NA	NA	NA	156333580	156332616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_156332656_156332793_156332916_156333076
ONT_simulated_read_9238019	chr4	-	4058	1	ISM	ENSMUSG00000045205.17	ENSMUST00000084892.12	6754	19	56235	530	51261	-530	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTATTTTCTGTCTAGTG	NA	NA	NA	NA	NA	NA	NA	NA	11265902	11261844	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_11261800_11265900
ONT_simulated_read_923861	chr6	-	401	4	ISM	ENSMUSG00000030304.12	ENSMUST00000136008.8	4174	14	24282	2566	24282	-2566	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACATAAAGCCTTTTCTAA	NA	NA	NA	NA	NA	NA	NA	NA	148089590	148083142	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530
ONT_simulated_read_9239085	chr4	+	1616	10	ISM	ENSMUSG00000042489.16	ENST00000373220.7	3700	23	3178	15858	3178	-15856	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCTGATTGGTTCCACAA	NA	NA	NA	NA	NA	NA	NA	NA	126454070	126469693	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_126454146_126455550_126455713_126457699_126457778_126458725_126458799_126459482_126459592_126459763_126460375_126466928_126467141_126468433_126468610_126468887_126468953_126469638
ONT_simulated_read_9242436	chr4	-	622	4	ISM	ENSMUSG00000035126.20	ENSMUST00000036451.15	3671	16	31994	26379	31967	0	internal_fragment	FALSE	non_canonical	NA	NA	NA	NA	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTTTTATTTAGTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	102939502	102921640	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_102921748_102923456_102923684_102929845_102930041_102939409
ONT_simulated_read_9242825	chr2	+	2300	8	FSM	ENSMUSG00000026662.14	ENST00000378614.8	2363	8	-23	86	0	-86	multi-exon	FALSE	canonical	NA	NA	NA	NA	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGTGATTTGTGTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	4886374	4912562	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_4886672_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4911391
ONT_simulated_read_9243047	chr3	-	274	1	ISM	ENSMUSG00000027829.16	ENSMUST00000029416.14	2169	11	11301	524	11180	-524	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTCCTTTGAGAGGTCCCA	NA	NA	NA	NA	NA	NA	NA	NA	65854369	65854095	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_65854100_65854400
ONT_simulated_read_9243086	chr6	-	171	3	ISM	ENSMUSG00000030218.3	ENSMUST00000032342.3	617	4	1523	293	1523	-293	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	288	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGAGCGCTACGCCAT	NA	NA	NA	NA	NA	NA	NA	NA	136851298	136849725	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_136849787_136850164_136850241_136851264
ONT_simulated_read_924467	chr11	+	359	3	ISM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	2	9325	2	-9325	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCAGATACAAGAAAAATACA	NA	NA	NA	NA	NA	NA	NA	NA	72332182	72333269	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_72332402_72332503_72332600_72333225
ONT_simulated_read_9246065	chr8	-	651	1	ISM	ENSMUSG00000033658.17	ENSMUST00000040241.15	6612	12	19502	4424	15752	457	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGCTCATACTTCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	111734894	111734243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_111734200_111734900
ONT_simulated_read_9250927	chr1	-	696	1	NIC	ENSMUSG00000037351.10	novel	3248	11	NA	NA	9829	-1370	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGCCCCACTCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	36739260	36738564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_36738600_36739300
ONT_simulated_read_9251457	chrX	-	608	7	ISM	ENSMUSG00000025151.17	ENSMUST00000026142.8	2821	13	3909	608	275	-97	internal_fragment	TRUE	canonical	NA	NA	NA	NA	332	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATTGAGTTTGAGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	93581840	93579687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789
ONT_simulated_read_9254250	chr2	+	1004	9	ISM	ENSMUSG00000039254.17	ENST00000423007.6	2110	18	7146	49	7146	-49	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCCGGGCCCTTCGCTGG	NA	NA	NA	NA	NA	NA	NA	NA	32137584	32144403	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_32137642_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
ONT_simulated_read_9254313	chr11	-	1185	9	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	20490	2994	20490	-2994	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTCTCAGGTTTGGATG	NA	NA	NA	NA	NA	NA	NA	NA	98894525	98886762	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332
ONT_simulated_read_9255333	chr4	+	460	4	ISM	ENSMUSG00000028910.13	ENSMUST00000030742.11	1337	10	23	9986	23	-9986	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATCCCTAAGGACATTCC	NA	NA	NA	NA	NA	NA	NA	NA	131570803	131585111	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_131570990_131581026_131581125_131581895_131582028_131585067
ONT_simulated_read_9263444	chr12	+	2571	15	FSM	ENSMUSG00000007411.17	ENST00000678175.1	3086	15	521	-6	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACCTTGCACTGTCTCC	NA	NA	NA	NA	NA	NA	NA	NA	111541484	111622652	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111600050_111600269_111606370_111606475_111613904_111614163_111619823_111619869_111621703
ONT_simulated_read_9269752	chr4	-	418	3	ISM	ENSMUSG00000028943.19	ENSMUST00000105653.8	1411	8	3329	2899	389	510	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGCCTGCCTGGAGA	NA	NA	NA	NA	NA	NA	NA	NA	152212993	152208225	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_152208251_152212525_152212790_152212864
ONT_simulated_read_9270026	chr5	-	401	1	Genic_Genomic	ENSMUSG00000029524.17	novel	NA	NA	NA	NA	5891	4	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGACTGTGAACTTAC	NA	NA	NA	NA	NA	NA	NA	NA	115616465	115616064	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Genic_Genomic_chr5_-_115616100_115616500
ONT_simulated_read_9270538	chr2	-	300	5	ISM	ENSMUSG00000068290.12	ENSMUST00000089559.11	1238	9	5948	331	5948	-331	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACCCCAGAGGAACTGGC	NA	NA	NA	NA	NA	NA	NA	NA	130500631	130496210	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508
ONT_simulated_read_9276368	chrX	+	554	5	ISM	ENSMUSG00000009995.18	ENST00000369776.8	850	7	946	63	929	-52	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAAGATGCAGGCAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	73327542	73332954	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_73327624_73331624_73331706_73332056_73332321_73332710_73332789_73332904
ONT_simulated_read_9280423	chr16	-	754	1	NIC	ENSMUSG00000022639.15	novel	2052	4	NA	NA	5035	-1270	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCGCCATCTTACAAAG	NA	NA	NA	NA	NA	NA	NA	NA	50548011	50547257	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr16_-_50547300_50548000
ONT_simulated_read_928065	chr19	+	492	2	ISM	ENSMUSG00000024940.12	ENSMUST00000081496.6	5190	28	0	16788	0	-16348	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGACGCTTGAACCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	5790931	5791772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_5791014_5791362
ONT_simulated_read_9286043	chr11	-	1811	1	ISM	ENSMUSG00000050567.17	ENSMUST00000059458.5	5528	5	33519	1348	33519	-1348	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACTCCTTAGGGAGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	50149619	50147808	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_50147800_50149600
ONT_simulated_read_9286221	chr17	-	678	4	ISM	ENSMUSG00000002625.11	ENSMUST00000236503.2	1987	15	17696	-1	17602	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	32551873	32540397	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784
ONT_simulated_read_9292048	chr6	-	1117	1	ISM	ENSMUSG00000029790.17	ENSMUST00000031810.15	3447	11	37899	1277	37826	-279	mono-exon	FALSE	NA	NA	NA	NA	NA	339	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGACTGAGCTGTGATT	NA	NA	NA	NA	NA	NA	NA	NA	30655849	30654732	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_30654700_30655800
ONT_simulated_read_9292415	chr5	+	756	7	ISM	ENSMUSG00000029017.14	ENSMUST00000030882.12	1615	13	1740	10157	1740	-10157	internal_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGCCATTGGCGCACCT	NA	NA	NA	NA	NA	NA	NA	NA	21943878	21951993	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_21944008_21945037_21945125_21945482_21945613_21947755_21947955_21948376_21948457_21950975_21951089_21951975
ONT_simulated_read_9298191	chr2	-	733	1	FSM	ENSMUSG00000074890.5	ENSMUST00000110674.4	3056	1	0	2323	0	-2323	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCAGATCATGCTGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	120971134	120970401	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_120970400_120971100
ONT_simulated_read_9299236	chr5	-	528	1	NIC	ENSMUSG00000029705.18	novel	12862	24	NA	NA	252121	-37970	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGCCCTGGAACAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	136342142	136341614	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_136341600_136342100
ONT_simulated_read_9300500	chr8	-	1008	1	ISM	ENSMUSG00000000759.15	ENSMUST00000000776.15	3797	22	56962	2	56962	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTCATGTGGTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	12665286	12664278	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_12664300_12665300
ONT_simulated_read_9309105	chr2	-	1225	13	ISM	ENSMUSG00000026970.17	ENSMUST00000028347.13	4436	14	120747	2682	38993	-153	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAAACGTTATTTATAAT	NA	NA	NA	NA	NA	NA	NA	NA	60672789	60583218	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640
ONT_simulated_read_9309336	chr1	-	473	3	ISM	ENSMUSG00000033722.10	ENSMUST00000035914.5	3797	7	14362	1072	14362	-1072	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACAAAGGCCGGTCCCCC	NA	NA	NA	NA	NA	NA	NA	NA	155094124	155089290	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_155089460_155093127_155093313_155094005
ONT_simulated_read_9310752	chr6	-	772	4	ISM	ENSMUSG00000004980.17	ENSMUST00000069949.13	1647	10	4652	0	4530	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTGCACTGCTACAACT	NA	NA	NA	NA	NA	NA	NA	NA	51442222	51437911	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_51438414_51440390_51440474_51441068_51441192_51442158
ONT_simulated_read_9311885	chr2	-	3054	7	ISM	ENSMUSG00000026933.18	ENSMUST00000183461.8	5090	17	38042	6799	37758	-6799	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAGCCCGGTAACCTCTT	NA	NA	NA	NA	NA	NA	NA	NA	25835252	25826536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25826664_25827957_25830326_25830876_25830962_25831389_25831482_25834437_25834616_25834953_25835051_25835145
ONT_simulated_read_9312434	chr10	-	405	3	ISM	ENSMUSG00000019814.6	ENSMUST00000019950.6	2297	11	10657	1951	10657	-1951	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCAACAAATGAGCTTGAT	NA	NA	NA	NA	NA	NA	NA	NA	13058255	13055834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_13055879_13056633_13056762_13058022
ONT_simulated_read_9313418	chr18	-	2149	11	ISM	ENSMUSG00000041482.18	ENST00000580640.5	8335	54	335573	9707	335573	-9707	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTATCGTCTGGTTTCC	NA	NA	NA	NA	NA	NA	NA	NA	63183767	63154325	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_63154404_63155468_63155617_63157482_63157642_63160587_63160803_63160906_63161055_63162125_63162259_63163345_63163599_63165911_63166095_63174617_63174877_63175503_63175912_63183602
ONT_simulated_read_9313979	chr18	-	216	1	NIC	ENSMUSG00000036585.17	novel	3981	4	NA	NA	16603	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTATTTTGGTTGACCCTA	NA	NA	NA	NA	NA	NA	NA	NA	38975175	38974959	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_38975000_38975200
ONT_simulated_read_9315833	chr19	-	437	1	ISM	ENSMUSG00000056917.14	ENSMUST00000169854.2	3583	16	2597	9489	525	-9447	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTTCCCGCCAGTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	5711138	5710701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_5710700_5711100
ONT_simulated_read_9320168	chr15	+	1422	7	ISM	ENSMUSG00000037386.17	ENST00000504942.6	4223	24	238775	219266	-222569	-219230	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATATCCGTTACCTCAC	NA	NA	NA	NA	NA	NA	NA	NA	39300392	39325930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_39301319_39315435_39315504_39317755_39317876_39320073_39320174_39321159_39321284_39322984_39323032_39325893
ONT_simulated_read_9320530	chr6	-	1090	10	ISM	ENSMUSG00000029782.21	ENSMUST00000115157.8	2273	15	7626	529	7623	-143	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGAGAGTAGTTCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	30502091	30482942	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899
ONT_simulated_read_9321920	chr12	+	1372	13	ISM	ENSMUSG00000020661.16	ENSMUST00000172689.8	2328	18	5692	61	5676	-61	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGTTAAACAAACAAACA	NA	NA	NA	NA	NA	NA	NA	NA	3947419	3957781	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
ONT_simulated_read_93275	chr5	-	759	9	ISM	ENSMUSG00000011831.17	ENST00000540033.2	2870	19	55369	51436	55369	-51436	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCAGTGTGCACTGAAGG	NA	NA	NA	NA	NA	NA	NA	NA	107967539	107947043	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_107947127_107958155_107958189_107960223_107960278_107961411_107961473_107963476_107963575_107963667_107963758_107964639_107964784_107966754_107966881_107967469
ONT_simulated_read_9327536	chr8	+	1441	3	ISM	ENSMUSG00000025809.16	ENST00000678591.1	3472	14	17264	38	17264	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	436	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTTTGGCTCTGTATT	NA	NA	NA	NA	NA	NA	NA	NA	129450813	129459681	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_129450910_129452500_129452668_129458503
ONT_simulated_read_9334801	chr10	-	428	4	ISM	ENSMUSG00000000731.16	ENSMUST00000019257.15	1926	14	6814	4412	6737	-4160	internal_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCACACCGGGCGAAGCT	NA	NA	NA	NA	NA	NA	NA	NA	77872600	77870276	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_77870324_77870419_77870542_77871490_77871668_77872518
ONT_simulated_read_9334807	chr7	-	553	1	ISM	ENSMUSG00000045639.15	ENSMUST00000058038.12	6120	3	5617	1233	5617	191	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCACTAGTGACTCAATGT	NA	NA	NA	NA	NA	NA	NA	NA	127207988	127207435	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_127207400_127208000
ONT_simulated_read_9338194	chr4	+	824	8	ISM	ENSMUSG00000028700.15	ENST00000371992.1	2877	23	477	5959	0	-5548	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTGACCCAGTCCTGCTG	NA	NA	NA	NA	NA	NA	NA	NA	115994951	116011086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_115995026_116008270_116008441_116009016_116009132_116009273_116009393_116009905_116009972_116010059_116010174_116010747_116010866_116011038
ONT_simulated_read_9339418	chrX	-	2011	1	ISM	ENSMUSG00000059493.14	ENSMUST00000087085.10	8805	9	322322	2102	89169	1417	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAATTACTTGAAATTACT	NA	NA	NA	NA	NA	NA	NA	NA	160620404	160618393	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_160618400_160620400
ONT_simulated_read_934011	chr11	-	804	1	ISM	ENSMUSG00000047260.5	ENSMUST00000054952.4	1332	2	307	408	272	-408	mono-exon	FALSE	NA	NA	NA	NA	NA	424	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCTGAAGCACAGAGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	73067556	73066752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_73066800_73067600
ONT_simulated_read_9342000	chr2	-	1233	7	ISM	ENSMUSG00000023216.14	ENST00000540029.5	1655	10	6768	21	6768	-21	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTCATTCACAGAGAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	120858303	120851906	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_120852014_120852212_120852374_120854965_120855266_120856224_120856468_120857176_120857281_120857562_120857702_120858124
ONT_simulated_read_9342562	chr1	-	829	1	ISM	ENSMUSG00000026360.10	ENSMUST00000127206.8	3021	5	2318	1677	2189	868	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTGCTAAATAATGTCA	NA	NA	NA	NA	NA	NA	NA	NA	143877581	143876752	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_143876800_143877600
ONT_simulated_read_9342725	chr7	-	373	1	ISM	ENSMUSG00000030785.9	ENSMUST00000033049.9	680	3	580	0	580	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTCTTGTGTTAGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	127804979	127804606	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_127804600_127805000
ONT_simulated_read_9343956	chr2	-	399	2	ISM	ENSMUSG00000039660.17	ENSMUST00000100220.5	1805	12	3400	445	3400	-445	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAAGAGCAATCCCGAGGC	NA	NA	NA	NA	NA	NA	NA	NA	30065062	30063927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_30064198_30064933
ONT_simulated_read_9346446	chr2	-	577	1	ISM	ENSMUSG00000035399.13	ENSMUST00000046908.10	1620	4	12461	669	12461	-638	mono-exon	FALSE	NA	NA	NA	NA	NA	233	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTGAGGACCTAGCAGGC	NA	NA	NA	NA	NA	NA	NA	NA	163248987	163248410	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_163248400_163249000
ONT_simulated_read_9347282	chr17	-	1051	7	ISM	ENSMUSG00000061232.17	ENSMUST00000172912.8	1570	8	325	384	25	56	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTCTTTAGTCAAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	34218938	34215374	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_34215451_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707
ONT_simulated_read_9347483	chr19	-	1034	1	NIC	ENSMUSG00000025228.6	novel	2757	11	NA	NA	17268	-623	mono-exon	FALSE	NA	NA	NA	NA	NA	402	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCACCCCAGCCAGCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	46366909	46365875	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_46365900_46366900
ONT_simulated_read_9350595	chrX	+	458	4	ISM	ENSMUSG00000019087.14	ENSMUST00000114171.10	2157	10	4761	1259	4761	-1259	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAATGGCTCTGTTGCCCA	NA	NA	NA	NA	NA	NA	NA	NA	73345529	73347036	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_73345628_73345967_73346207_73346827_73346876_73346963
ONT_simulated_read_9353542	chr16	+	1686	3	ISM	ENSMUSG00000022971.19	ENSMUST00000089042.7	2580	8	18822	286	18822	-286	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGTTTTCTCAACTTA	NA	NA	NA	NA	NA	NA	NA	NA	91188608	91201968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_91188767_91190644_91190802_91200597
ONT_simulated_read_9357488	chr8	+	1140	4	FSM	ENSMUSG00000031840.15	ENST00000464076.3	1108	4	2	-34	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACGCAGTCCTTGACAT	NA	NA	NA	NA	NA	NA	NA	NA	71207359	71211281	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_71207518_71209093_71209213_71209783_71209909_71210543
ONT_simulated_read_9359880	chr11	-	841	8	ISM	ENSMUSG00000033352.12	ENST00000415385.7	3703	12	68694	2389	68694	-2389	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGGGGAAGCAAGACGTAA	NA	NA	NA	NA	NA	NA	NA	NA	65610429	65581482	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_65581631_65582553_65582600_65584247_65584397_65587113_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309
ONT_simulated_read_9368601	chr10	-	533	5	ISM	ENSMUSG00000020263.15	ENSMUST00000020500.14	3020	21	42826	855	42826	-855	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAGCACGTGGGAAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	83441776	83436751	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_83436906_83437746_83437795_83438621_83438763_83438989_83439027_83441623
ONT_simulated_read_9371946	chr13	-	2271	4	ISM	ENSMUSG00000060739.9	ENSMUST00000073456.9	2700	6	2493	58	2408	-58	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATAATAGAATCTCTTTAAA	NA	NA	NA	NA	NA	NA	NA	NA	97271952	97265989	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_97267737_97268350_97268544_97270046_97270227_97271801
ONT_simulated_read_9373557	chr14	-	999	1	ISM	ENSMUSG00000044519.9	ENSMUST00000166737.2	4301	2	7479	3217	7479	-3217	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAACGAAGAGAGGAAGT	NA	NA	NA	NA	NA	NA	NA	NA	33693242	33692243	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_33692200_33693200
ONT_simulated_read_9375738	chr17	-	435	4	ISM	ENSMUSG00000040260.9	ENST00000398904.6	3380	24	2671	31791	2671	-9912	internal_fragment	FALSE	canonical	NA	NA	NA	NA	88	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATCATCGCTCAGAGCC	NA	NA	NA	NA	NA	NA	NA	NA	49803243	49797181	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_49797356_49800848_49800944_49801402_49801478_49803152
ONT_simulated_read_9378686	chrX	+	571	1	ISM	ENSMUSG00000037347.8	ENSMUST00000044138.8	2206	2	0	37391	0	-37391	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATCCGGGCGACGCGGAG	NA	NA	NA	NA	NA	NA	NA	NA	19925798	19926369	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_19925800_19926400
ONT_simulated_read_9378868	chr15	-	406	1	ISM	ENSMUSG00000042632.18	ENSMUST00000174021.8	3318	17	41113	218	41113	111	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGGTTCCACCCTATCCT	NA	NA	NA	NA	NA	NA	NA	NA	79171051	79170645	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_79170600_79171100
ONT_simulated_read_9380546	chr7	-	1892	11	ISM	ENSMUSG00000041560.13	ENSMUST00000044158.13	3176	13	3203	948	3203	-948	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATGGTTGTGAGCCACCA	NA	NA	NA	NA	NA	NA	NA	NA	15676796	15671055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_15671815_15672098_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713
ONT_simulated_read_9381612	chr8	+	968	4	ISM	ENSMUSG00000038365.9	ENST00000276326.9	1536	8	14351	100	14351	-100	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	288	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTTGATCCTTGTAAA	NA	NA	NA	NA	NA	NA	NA	NA	13979293	13990056	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_13979441_13981181_13981365_13985145_13985290_13989562
ONT_simulated_read_9382318	chr16	-	1101	12	ISM	ENSMUSG00000022680.15	ENSMUST00000115804.9	2880	23	26874	6188	26874	-6188	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGACAGCAGGGCTCCTG	NA	NA	NA	NA	NA	NA	NA	NA	13694011	13658211	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841
ONT_simulated_read_9382746	chr5	-	320	2	ISM	ENSMUSG00000070733.14	ENSMUST00000094700.11	9852	60	100483	20197	100483	-20197	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTGAAAGAGCTGGATGA	NA	NA	NA	NA	NA	NA	NA	NA	73204996	73198750	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_73198937_73204862
ONT_simulated_read_9386162	chr3	-	579	1	FSM	ENSMUSG00000034437.9	ENSMUST00000075650.7	492	1	0	-87	0	87	mono-exon	FALSE	NA	NA	NA	NA	NA	187	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAAGCTTGGTGCATTTT	NA	NA	NA	NA	NA	NA	NA	NA	116355075	116354496	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_116354500_116355100
ONT_simulated_read_9387450	chr17	-	743	1	ISM	ENSMUSG00000045409.17	ENSMUST00000113706.10	3204	7	10671	1281	8324	-1044	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGGATTGTACTCTGGT	NA	NA	NA	NA	NA	NA	NA	NA	36571788	36571045	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_36571000_36571800
ONT_simulated_read_9388763	chrX	-	1581	1	ISM	ENSMUSG00000067276.6	ENSMUST00000087316.6	3561	13	23603	0	23603	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCTTGACTAGTTAATGG	NA	NA	NA	NA	NA	NA	NA	NA	142586807	142585226	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_142585200_142586800
ONT_simulated_read_939041	chr9	-	2370	6	ISM	ENSMUSG00000032366.16	ENSMUST00000113690.8	2890	8	9973	-3	9720	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	NA	NA	NA	NA	NA	NA	NA	66941271	66929871	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_66931848_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157
ONT_simulated_read_9391266	chr8	-	905	4	ISM	ENSMUSG00000031774.9	ENSMUST00000034226.8	2873	8	14552	1133	14552	-1133	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	104	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTAGATGAATGGGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	95314073	95301898	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951
ONT_simulated_read_9392435	chr4	-	957	5	ISM	ENSMUSG00000043962.17	ENST00000469141.6	3074	11	20868	-1	20868	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	236	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCATCCCACGACAGCAGAG	NA	NA	NA	NA	NA	NA	NA	NA	126067320	126059065	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236
ONT_simulated_read_9392823	chr13	-	1079	1	FSM	ENSMUSG00000076431.5	ENSMUST00000067230.6	4795	1	0	3716	0	-3716	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGCGAAAGAAGGTGAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	29137696	29136617	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr13_-_29136600_29137700
ONT_simulated_read_9392974	chrX	-	2171	15	ISM	ENSMUSG00000031328.17	ENSMUST00000033699.13	8312	47	15836	2016	15753	-2016	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCCCACGAGAGAATGGC	NA	NA	NA	NA	NA	NA	NA	NA	73274325	73269162	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_73269181_73269807_73269941_73270466_73270583_73270803_73270942_73271096_73271364_73271457_73271581_73271691_73271845_73271926_73272131_73272365_73272528_73272624_73272799_73272986_73273116_73273431_73273573_73273661_73273765_73273906_73274003_73274111
ONT_simulated_read_9393028	chr9	+	722	7	ISM	ENSMUSG00000041506.16	ENSMUST00000047721.10	1586	15	0	2387	0	-2387	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGACTGGGTTGGCCCTGT	NA	NA	NA	NA	NA	NA	NA	NA	106354467	106360236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110
ONT_simulated_read_9397641	chr2	+	1315	10	FSM	ENSMUSG00000027168.22	ENST00000481563.6	1504	10	189	0	189	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTCTCTGCAGCTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	105512879	105525802	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_105512979_105514172_105514304_105515095_105515138_105515231_105515448_105516122_105516289_105521909_105522069_105522538_105522622_105522814_105522966_105523081_105523198_105525650
ONT_simulated_read_9400994	chr13	+	1301	4	ISM	ENSMUSG00000062822.9	ENSMUST00000026519.10	2565	13	16	16022	0	-16022	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACGGAGGTTTCTGTCC	NA	NA	NA	NA	NA	NA	NA	NA	119599319	119606631	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050
ONT_simulated_read_9404364	chr11	+	1042	6	ISM	ENSMUSG00000007850.17	ENST00000393432.8	2243	14	5448	135	4872	-135	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTTTTAGGATTTTTGG	NA	NA	NA	NA	NA	NA	NA	NA	50274005	50277216	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
ONT_simulated_read_9405195	chr10	-	543	1	ISM	ENSMUSG00000039914.7	ENSMUST00000220027.2	1307	5	4913	136	4913	-136	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCTGCTTTACCACAGC	NA	NA	NA	NA	NA	NA	NA	NA	128199647	128199104	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128199100_128199600
ONT_simulated_read_9405745	chr2	-	729	1	ISM	ENSMUSG00000046110.16	ENSMUST00000110613.9	2240	10	4535	253	4535	-253	mono-exon	FALSE	NA	NA	NA	NA	NA	912	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGCAGGATTTTTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	121282639	121281910	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_121281900_121282600
ONT_simulated_read_9406501	chr8	+	2244	10	ISM	ENSMUSG00000006273.15	ENSMUST00000006435.8	2825	14	13567	0	13567	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAAATGACTCTGTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	69554864	69566363	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
ONT_simulated_read_9408649	chr7	-	1658	1	NIC	ENSMUSG00000030930.15	novel	5041	8	NA	NA	78249	-1028	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGGTTCCGGGAGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	131840194	131838536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_131838500_131840200
ONT_simulated_read_9409366	chr2	-	763	1	NIC	ENSMUSG00000027428.10	novel	2170	5	NA	NA	6859	-983	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCAAAAAACAGGTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	144385930	144385167	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_144385200_144385900
ONT_simulated_read_941332	chr1	-	737	10	ISM	ENSMUSG00000006301.18	ENSMUST00000113796.8	11011	11	10358	1111	10358	-1111	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTCCCTTTCACTGGC	NA	NA	NA	NA	NA	NA	NA	NA	74333162	74328522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066
ONT_simulated_read_9413620	chr4	-	626	4	ISM	ENSMUSG00000096351.3	ENSMUST00000217934.2	2413	10	4860	1680	4860	-1125	internal_fragment	TRUE	canonical	NA	NA	NA	NA	216	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGAGACGACAGGGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	156334958	156333312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_156333580_156333651_156333731_156333841_156333958_156334794
ONT_simulated_read_9413715	chr6	-	1019	6	ISM	ENSMUSG00000030127.16	ENST00000538410.5	1553	7	544	435	519	-418	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCTGGCTCTTAACCACC	NA	NA	NA	NA	NA	NA	NA	NA	124941892	124936261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_124936601_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686
ONT_simulated_read_941809	chr11	+	834	6	ISM	ENSMUSG00000020811.17	ENST00000539421.1	2415	9	8940	932	8940	-931	internal_fragment	FALSE	canonical	NA	NA	NA	NA	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTAGACTGGCTCAAGTAT	NA	NA	NA	NA	NA	NA	NA	NA	71659501	71679542	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_71659640_71662678_71662801_71674083_71674244_71675094_71675260_71678543_71678745_71679494
ONT_simulated_read_9418588	chr19	-	516	2	ISM	ENSMUSG00000024668.9	ENSMUST00000235222.2	817	4	9086	-126	327	126	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCCTGGGCTTTGTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	10494420	10480054	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_10480494_10494343
ONT_simulated_read_9419990	chr9	+	1770	11	ISM	ENSMUSG00000006676.17	ENST00000398888.6	4557	26	6392	346	6233	-346	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGCGGCTTTGGTGGCCC	NA	NA	NA	NA	NA	NA	NA	NA	108374287	108378550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108378392
ONT_simulated_read_9423239	chr10	+	703	3	ISM	ENSMUSG00000019810.16	ENSMUST00000060212.13	2007	8	0	9663	0	-9663	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCATCCGCTCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	13376744	13381624	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_13377118_13378814_13379003_13381482
ONT_simulated_read_9423337	chr19	-	604	1	NIC	ENSMUSG00000071640.4	novel	758	2	NA	NA	705	-83	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCTAATAAAGGGTAAAACT	NA	NA	NA	NA	NA	NA	NA	NA	9535842	9535238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_9535200_9535800
ONT_simulated_read_9425182	chr2	-	1026	8	ISM	ENSMUSG00000039834.18	ENSMUST00000041361.14	4587	28	9065	7441	9065	-7441	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAAGAGCTGAAGCAGCA	NA	NA	NA	NA	NA	NA	NA	NA	164744612	164741242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_164741407_164741790_164741952_164742030_164742108_164742197_164742315_164742420_164742440_164743337_164743451_164744127_164744306_164744415
ONT_simulated_read_9429161	chr3	-	1467	1	FSM	ENSMUSG00002076967.1	ENSMUST00020182038.1	138	1	-417	-912	-417	912	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATTGTCAGAATGTAGG	NA	NA	NA	NA	NA	NA	NA	NA	96153696	96152229	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_96152200_96153700
ONT_simulated_read_9432025	chr8	+	493	2	ISM	ENSMUSG00000031647.11	ENSMUST00000160719.8	6335	3	0	19976	0	-15609	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATCATAGTCAAAGAGGG	NA	NA	NA	NA	NA	NA	NA	NA	61085893	61109787	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_61086093_61109493
ONT_simulated_read_9438351	chr2	+	2743	6	ISM	ENSMUSG00000033943.16	ENST00000219905.12	11942	25	44031	9383	44023	-9383	internal_fragment	FALSE	canonical	NA	NA	NA	NA	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTATTGTGGGAATCACA	NA	NA	NA	NA	NA	NA	NA	NA	119771731	119788845	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_119772327_119776652_119776944_119777305_119778775_119781566_119781695_119783355_119783408_119788637
ONT_simulated_read_9438407	chr7	-	371	1	NIC	ENSMUSG00000036835.8	novel	669	3	NA	NA	502	-71	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	159	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGGCCCCGCTGGGGCGCTC	NA	NA	NA	NA	NA	NA	NA	NA	30261854	30261483	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_-_30261500_30261900
ONT_simulated_read_9439555	chr5	-	761	1	ISM	ENSMUSG00000002944.16	ENSMUST00000170051.8	3399	15	66456	886	45559	-90	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTCTGCTCAGCTGCAA	NA	NA	NA	NA	NA	NA	NA	NA	17988334	17987573	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_17987600_17988300
ONT_simulated_read_9439559	chr10	-	551	1	ISM	ENSMUSG00000000711.4	ENSMUST00000000727.4	3180	6	16631	1908	7277	447	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTTAGTTACATTAAAG	NA	NA	NA	NA	NA	NA	NA	NA	128515502	128514951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128515000_128515500
ONT_simulated_read_944073	chr8	+	800	6	ISM	ENSMUSG00000003573.16	ENST00000594439.5	958	7	539	-1	539	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCCATGGAGTGTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	70738580	70745815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_70738713_70742701_70742824_70743656_70743814_70743967_70744079_70744166_70744254_70745624
ONT_simulated_read_9443194	chr2	-	766	7	ISM	ENSMUSG00000026958.14	ENSMUST00000028332.8	1682	13	1351	864	1351	-864	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAGTCCAGGCCTGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	25245020	25243165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25243230_25243371_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904
ONT_simulated_read_9443531	chr5	-	1173	10	ISM	ENSMUSG00000029703.11	ENSMUST00000006301.11	2473	15	2999	687	2999	-687	internal_fragment	FALSE	canonical	NA	NA	NA	NA	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAACACCTCCTGAAAGAG	NA	NA	NA	NA	NA	NA	NA	NA	136161929	136152312	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_136152367_136152453_136152610_136152720_136152813_136159074_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159_136161283_136161828
ONT_simulated_read_9444884	chr6	-	1373	1	NIC	ENSMUSG00000056698.12	novel	2164	13	NA	NA	17592	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAATAAATAAAAATAG	NA	NA	NA	NA	NA	NA	NA	NA	72545905	72544532	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_72544500_72545900
ONT_simulated_read_9447305	chr4	-	1945	7	ISM	ENSMUSG00000006219.13	ENSMUST00000006381.11	3101	9	2776	929	2776	-929	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAATTTAGCCATGTCTA	NA	NA	NA	NA	NA	NA	NA	NA	141322759	141304301	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534
ONT_simulated_read_9449811	chr11	-	1917	16	ISM	ENSMUSG00000002812.5	ENST00000579294.5	3751	29	402	3908	402	-3908	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCCCCAGGGTTCTGGG	NA	NA	NA	NA	NA	NA	NA	NA	60615689	60609045	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616
ONT_simulated_read_9450325	chr6	-	1166	1	ISM	ENSMUSG00000030059.16	ENSMUST00000095664.6	5732	17	23644	1316	23644	-1316	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCCTTGAACCTTCAAT	NA	NA	NA	NA	NA	NA	NA	NA	97132439	97131273	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_97131300_97132400
ONT_simulated_read_9452490	chr2	+	808	1	ISM	ENSMUSG00000075307.4	ENSMUST00000100050.4	2529	6	0	13303	0	-13303	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACCCAGAAGTCCAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	69500463	69501271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_69500500_69501300
ONT_simulated_read_9453759	chr11	-	1765	6	ISM	ENSMUSG00000078622.9	ENSMUST00000002043.10	5193	13	11312	2379	-604	992	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGGTTTTTGCTTTGGGA	NA	NA	NA	NA	NA	NA	NA	NA	106095858	106090612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_106091843_106092836_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746
ONT_simulated_read_9455464	chr1	-	616	1	FSM	ENSMUSG00000096474.3	ENSMUST00000178932.3	480	1	0	-136	0	136	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTGGGTGTGATGGCA	NA	NA	NA	NA	NA	NA	NA	NA	179348422	179347806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_179347800_179348400
ONT_simulated_read_945798	chr3	-	1438	10	ISM	ENSMUSG00000027889.18	ENST00000528454.5	2645	18	3777	109	3777	-109	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTCCAAAGTGAGATGCTG	NA	NA	NA	NA	NA	NA	NA	NA	107986106	107982298	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995
ONT_simulated_read_9458587	chr7	-	588	5	ISM	ENSMUSG00000078566.9	ENSMUST00000106112.2	1756	6	10708	994	33	-994	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	113	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGTTTGCACTATGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	138500527	138493558	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_138493690_138496108_138496259_138496338_138496446_138499724_138499807_138500409
ONT_simulated_read_9458722	chr15	-	1183	10	ISM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	30	729	8	-591	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCCAGCCCGCCAACGTTG	NA	NA	NA	NA	NA	NA	NA	NA	75952731	75942767	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
ONT_simulated_read_9458732	chr2	-	1696	7	ISM	ENSMUSG00000027210.21	ENSMUST00000110906.9	3229	13	15509	290	15300	-135	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAAGTAGGATTCTATC	NA	NA	NA	NA	NA	NA	NA	NA	115879693	115693915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_115694995_115697290_115697386_115697749_115697861_115699225_115699285_115752152_115752230_115830611_115830758_115879564
ONT_simulated_read_9460979	chr1	-	609	2	ISM	ENSMUSG00000060771.16	ENST00000674128.1	3027	16	94311	262	94310	154	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTGGAACCAACCTGACA	NA	NA	NA	NA	NA	NA	NA	NA	37800145	37794109	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_37794603_37800029
ONT_simulated_read_94629	chr5	-	1357	1	ISM	ENSMUSG00000029338.14	ENSMUST00000031281.14	5656	17	144391	2432	143085	-488	mono-exon	FALSE	NA	NA	NA	NA	NA	204	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCGAAGGAAATAGCTCAG	NA	NA	NA	NA	NA	NA	NA	NA	98034430	98033073	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_98033100_98034400
ONT_simulated_read_946434	chr9	+	995	8	ISM	ENSMUSG00000032586.10	ENSMUST00000049348.9	2706	15	11277	996	11271	334	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTACTTCCAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	107839431	107848473	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
ONT_simulated_read_9464512	chr2	-	1131	6	ISM	ENSMUSG00000026860.17	ENSMUST00000113620.10	1694	10	8922	-2	8897	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGATCTCAGTCCATGAG	NA	NA	NA	NA	NA	NA	NA	NA	30240355	30234820	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30240299
ONT_simulated_read_9466282	chr5	-	535	6	ISM	ENSMUSG00000029014.15	ENST00000249270.11	1826	15	10021	9414	10021	7839	internal_fragment	FALSE	canonical	NA	NA	NA	NA	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAGAAAGAAGAGGAAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	21980067	21971665	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931
ONT_simulated_read_9468802	chr7	-	1237	10	ISM	ENSMUSG00000001794.14	ENSMUST00000126116.3	1429	11	961	135	0	-88	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACACCCTAGTGCCTACGC	NA	NA	NA	NA	NA	NA	NA	NA	29893512	29886502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302
ONT_simulated_read_9470104	chr3	+	481	5	ISM	ENSMUSG00000042613.10	ENST00000368465.5	2083	8	-23	2758	9	-903	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGACGGAGGGGCCGGGAG	NA	NA	NA	NA	NA	NA	NA	NA	89344021	89352821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89344088_89350428_89350556_89350758_89350824_89350902_89351063_89352758
ONT_simulated_read_9470377	chrX	+	791	6	ISM	ENSMUSG00000025592.18	ENST00000373125.9	2430	12	373	111601	373	-107617	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTTACCTCCTGCATCAG	NA	NA	NA	NA	NA	NA	NA	NA	112208330	112633987	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_112208633_112362154_112362194_112465944_112466058_112549590_112549723_112614405_112614565_112633941
ONT_simulated_read_9471899	chr9	+	2064	1	ISM	ENSMUSG00000032601.14	ENSMUST00000035220.12	4965	11	56102	128	55788	-128	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTCACTAGAAGTTAA	NA	NA	NA	NA	NA	NA	NA	NA	108625443	108627507	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_108625400_108627500
ONT_simulated_read_9472214	chr9	-	1742	14	ISM	ENSMUSG00000032030.17	ENSMUST00000034529.14	3585	19	24718	807	24714	-807	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTACATGGCCTAGCCGGG	NA	NA	NA	NA	NA	NA	NA	NA	53554093	53529130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_53529311_53532459_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980
ONT_simulated_read_9472532	chr1	+	699	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	0	519	0	-519	mono-exon	FALSE	NA	NA	NA	NA	NA	352	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCTTGTCAAGAAGGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	60743090	60743789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_+_60743100_60743800
ONT_simulated_read_9474506	chr11	+	1139	10	ISM	ENSMUSG00000020755.10	ENSMUST00000140991.2	3654	11	0	2698	0	-2698	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACAGGCTGCTCGTCCCGT	NA	NA	NA	NA	NA	NA	NA	NA	115824107	115854853	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_115824608_115826191_115826302_115828835_115828884_115842792_115842836_115848186_115848276_115851325_115851418_115852181_115852243_115852564_115852617_115853319_115853379_115854768
ONT_simulated_read_9475857	chr7	-	694	5	ISM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	8436	468	7507	-329	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCTCCTGGAGAGCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	45036730	45026344	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666
ONT_simulated_read_9476194	chr2	-	950	1	ISM	ENSMUSG00000017929.14	ENSMUST00000109221.9	4210	9	47729	2061	47729	-2061	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACCTCCGGTCACTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	167143374	167142424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_167142400_167143400
ONT_simulated_read_9478457	chr7	-	904	1	ISM	ENSMUSG00000010751.16	ENSMUST00000075588.13	4170	6	11243	2707	-1833	-790	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTCTCTCTGCTCTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	143192155	143191251	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_143191300_143192200
ONT_simulated_read_9487724	chr10	+	1130	8	ISM	ENSMUSG00000053825.16	ENST00000552948.5	3973	30	-1	109672	0	-109672	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCCGGGTGGGAGAGGT	NA	NA	NA	NA	NA	NA	NA	NA	106306206	106655316	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_106306453_106310492_106310744_106393106_106393161_106579347_106579450_106597843_106598009_106603334_106603410_106636597_106636715_106655196
ONT_simulated_read_9487874	chr7	-	615	1	ISM	ENSMUSG00000060402.9	ENSMUST00000238947.2	2699	4	77588	1142	77588	-850	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGCTACTATCATCCTG	NA	NA	NA	NA	NA	NA	NA	NA	34375649	34375034	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_34375000_34375600
ONT_simulated_read_9489371	chr17	+	535	6	ISM	ENSMUSG00000038141.12	ENSMUST00000088940.6	4405	17	0	13347	0	-13347	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACAGTACAGGGTTACTG	NA	NA	NA	NA	NA	NA	NA	NA	6320744	6345242	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198
ONT_simulated_read_9493708	chr17	-	920	9	ISM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	5420	4263	5420	-4263	internal_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCCCCCCTAACATTGAC	NA	NA	NA	NA	NA	NA	NA	NA	36275233	36271973	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145
ONT_simulated_read_9495956	chr1	-	137	2	ISM	ENSMUSG00000007097.15	ENST00000392233.7	3194	23	19609	1576	19609	-1576	internal_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGACGGCTTTGGCTGCC	NA	NA	NA	NA	NA	NA	NA	NA	172105931	172103760	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_172103790_172105823
ONT_simulated_read_9496090	chr8	-	438	1	ISM	ENSMUSG00000031537.16	ENSMUST00000033939.13	3580	22	46129	800	46129	-244	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATCTCTCTTCCTCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	23150465	23150027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_23150000_23150500
ONT_simulated_read_9497489	chr14	+	1788	14	ISM	ENSMUSG00000054423.15	ENST00000612439.4	5445	28	276698	81660	276337	-81014	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGCAGCGGCTAAAACTG	NA	NA	NA	NA	NA	NA	NA	NA	9923361	10015544	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_9923480_9933375_9933443_9941181_9941291_9947347_9947561_9960530_9960668_9963791_9963980_9966354_9966514_9977899_9978002_9980222_9980287_9980658_9980783_9996247_9996355_10002583_10002741_10003762_10003905_10015443
ONT_simulated_read_9497736	chr15	+	641	4	ISM	ENSMUSG00000022339.10	ENSMUST00000226165.2	1931	7	151	12706	0	-12504	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTCAGAAAGTAGGTTG	NA	NA	NA	NA	NA	NA	NA	NA	44482986	44491918	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_44483304_44487838_44487937_44490952_44491032_44491771
ONT_simulated_read_9500165	chr19	+	753	5	ISM	ENSMUSG00000024851.15	ENSMUST00000049658.14	4206	24	48	10576	48	-10576	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAGGACCTCTCATGTGT	NA	NA	NA	NA	NA	NA	NA	NA	4150045	4153389	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_4150214_4151143_4151263_4152672_4152888_4152974_4153097_4153260
ONT_simulated_read_9500233	chr13	-	1617	7	ISM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	1180	245	1180	-245	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	2482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTACGTATGTTTATACT	NA	NA	NA	NA	NA	NA	NA	NA	64516940	64511272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841
ONT_simulated_read_9500237	chrX	-	1869	11	ISM	ENSMUSG00000031161.16	ENST00000643934.1	3617	27	9552	222	9552	-222	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCAGTCCGTACCTTGGAT	NA	NA	NA	NA	NA	NA	NA	NA	7803691	7796649	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542
ONT_simulated_read_9501938	chr7	-	432	1	ISM	ENSMUSG00000019539.12	ENSMUST00000211352.2	1453	7	8877	0	8877	0	mono-exon	FALSE	NA	NA	NA	NA	NA	337	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	NA	NA	NA	NA	NA	NA	NA	NA	44732768	44732336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_44732300_44732800
ONT_simulated_read_9503365	chr3	-	2010	13	ISM	ENSMUSG00000027883.16	ENST00000674914.1	2321	15	19182	-68	8535	68	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGAGCTCGCCACTGTAGC	NA	NA	NA	NA	NA	NA	NA	NA	108610363	108586829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_108587120_108589321_108589540_108589987_108590142_108594135_108594316_108597081_108597153_108604264_108604395_108604843_108604953_108606233_108606390_108607979_108608096_108608202_108608327_108609060_108609204_108609714_108609851_108610180
ONT_simulated_read_9505492	chr9	+	800	7	ISM	ENSMUSG00000032359.15	ENSMUST00000034915.15	1617	12	0	10667	0	-10667	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCAACAATCATGGCTGC	NA	NA	NA	NA	NA	NA	NA	NA	89936319	89947475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_89936688_89942531_89942564_89943571_89943678_89944769_89944841_89946205_89946311_89946559_89946647_89947444
ONT_simulated_read_9506640	chr2	-	1048	9	FSM	ENSMUSG00000027639.17	ENST00000646066.1	1024	9	2	-26	2	26	multi-exon	FALSE	canonical	NA	NA	NA	NA	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAGAAAAAGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	156963863	156943613	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_-_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156958271_156958428_156962401_156962473_156963750
ONT_simulated_read_9506997	chr17	-	2435	12	ISM	ENSMUSG00000024095.16	ENSMUST00000061331.14	3116	13	8696	0	8589	0	3prime_fragment	FALSE	non_canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATACTAAGGCTGTTGTTC	NA	NA	NA	NA	NA	NA	NA	NA	80361067	80336915	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356290_80357234_80357322_80358056_80358295_80360951
ONT_simulated_read_9509190	chr1	+	1169	6	ISM	ENSMUSG00000026457.15	ENSMUST00000112237.2	3446	8	108	5235	108	-5235	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGAGCTTCGTTCCCTGG	NA	NA	NA	NA	NA	NA	NA	NA	134343301	134355851	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_134343728_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819
ONT_simulated_read_9509534	chr2	+	596	1	ISM	ENSMUSG00000017760.17	ENSMUST00000103092.9	3646	16	6901	635	5748	378	mono-exon	FALSE	NA	NA	NA	NA	NA	238	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGCAGGGGGGGGCGAC	NA	NA	NA	NA	NA	NA	NA	NA	164681721	164682317	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_164681700_164682300
ONT_simulated_read_9510090	chr15	-	1066	1	ISM	ENSMUSG00000022994.10	ENSMUST00000096224.6	6038	22	15185	1410	12283	761	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCCCAAACCTGGCCTCC	NA	NA	NA	NA	NA	NA	NA	NA	98490329	98489263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_98489300_98490300
ONT_simulated_read_95108	chr2	-	403	2	ISM	ENSMUSG00000027173.8	ENSMUST00000028595.8	1801	9	19935	0	19935	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTACTCAGAATGGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	104553288	104552128	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_104552464_104553220
ONT_simulated_read_9514951	chr14	-	1967	7	ISM	ENSMUSG00000014496.9	ENST00000683139.1	7519	29	159	46537	159	-43459	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGTCTTACACACCTCT	NA	NA	NA	NA	NA	NA	NA	NA	31503506	31467261	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_31467321_31468869_31468958_31470599_31470801_31477689_31477761_31486210_31486290_31500878_31500963_31502121
ONT_simulated_read_9518074	chr9	-	729	6	ISM	ENSMUSG00000062762.18	ENST00000527235.6	1487	9	6797	444	6797	-444	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCTGCCGTGGAAGGCAG	NA	NA	NA	NA	NA	NA	NA	NA	36697846	36691336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_36691566_36693636_36693712_36695763_36695876_36696828_36696949_36697231_36697357_36697778
ONT_simulated_read_9518545	chr1	-	449	3	ISM	ENSMUSG00000048402.15	ENST00000452319.6	4447	11	37	19760	37	-19760	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACGCATGATTCGGACCTC	NA	NA	NA	NA	NA	NA	NA	NA	118795879	118783275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_118783368_118794301_118794488_118795708
ONT_simulated_read_9518957	chr18	+	981	1	ISM	ENSMUSG00000102206.6	ENSMUST00000115657.10	5360	4	1500	174425	1325	-174156	mono-exon	FALSE	NA	NA	NA	NA	NA	264	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAAGTCACCCTGGACAGG	NA	NA	NA	NA	NA	NA	NA	NA	37145304	37146285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_+_37145300_37146300
ONT_simulated_read_9519955	chr9	-	669	1	ISM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	34746	2921	34676	-2921	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTTATTCTTTTTCTAA	NA	NA	NA	NA	NA	NA	NA	NA	36644229	36643560	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_36643600_36644200
ONT_simulated_read_9520611	chr12	+	375	1	NIC	ENSMUSG00000113642.2	novel	550	2	NA	NA	0	-123	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCAGGGATCCAAGACCCC	NA	NA	NA	NA	NA	NA	NA	NA	18111967	18112342	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_+_18112000_18112300
ONT_simulated_read_9521185	chr17	-	944	5	ISM	ENSMUSG00000024213.15	ENSMUST00000231742.2	1523	6	412	413	412	-413	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGTCCCCACGCCGAGA	NA	NA	NA	NA	NA	NA	NA	NA	27815777	27798773	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_27799329_27799749_27799929_27800981_27801067_27802185_27802231_27815697
ONT_simulated_read_9522725	chr7	-	4203	1	ISM	ENSMUSG00000090762.3	ENSMUST00000233304.2	7979	7	40111	1970	38212	-1970	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAGTACAGCTCATGTG	NA	NA	NA	NA	NA	NA	NA	NA	12428820	12424617	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_12424600_12428800
ONT_simulated_read_9522877	chr3	+	914	2	FSM	ENSMUSG00000038403.11	ENST00000475797.1	1285	2	-9	380	0	-380	multi-exon	FALSE	canonical	NA	NA	NA	NA	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGCTGAAATGACCCTAG	NA	NA	NA	NA	NA	NA	NA	NA	96432487	96436134	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_+_96432647_96435379
ONT_simulated_read_9525599	chr17	+	357	3	ISM	ENSMUSG00000090083.12	ENSMUST00000024817.15	5404	8	178	18369	104	11073	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAATACGAAGTCATTGA	NA	NA	NA	NA	NA	NA	NA	NA	29833941	29845596	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_29834053_29840482_29840612_29845479
ONT_simulated_read_9527847	chr6	-	662	5	NNC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	12451	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCACTCTGACTGGCT	NA	NA	NA	NA	NA	NA	NA	NA	115002386	114981341	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr6_-_114981481_114987767_114987831_114989118_114989281_114993043_114993190_115002234
ONT_simulated_read_9527851	chr19	-	1006	1	ISM	ENSMUSG00000024991.9	ENST00000369144.8	5160	23	28377	685	28362	-159	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTAATTTGTAGTGATG	NA	NA	NA	NA	NA	NA	NA	NA	60750719	60749713	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_60749700_60750700
ONT_simulated_read_9528165	chr2	+	669	1	ISM	ENSMUSG00000047907.12	ENSMUST00000109159.3	4314	3	251880	27532	1370	-2943	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGTCCGTCCTGAACAA	NA	NA	NA	NA	NA	NA	NA	NA	169726812	169727481	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_169726800_169727500
ONT_simulated_read_952848	chr13	-	968	8	ISM	ENSMUSG00000003062.14	ENST00000396013.5	1251	9	18534	213	21	-76	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGGTCTTGTGCTGCATC	NA	NA	NA	NA	NA	NA	NA	NA	19560806	19542087	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548
ONT_simulated_read_9529209	chr2	-	1428	8	ISM	ENSMUSG00000041975.18	ENSMUST00000100037.9	2254	10	62032	527	24823	349	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTGTTTTGTTCTGTTCT	NA	NA	NA	NA	NA	NA	NA	NA	70823895	70795431	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812540_70823827
ONT_simulated_read_9530665	chr6	-	149	1	ISM	ENSMUSG00000032899.15	ENSMUST00000049150.8	3380	9	2640	11897	2640	-10906	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCTGGAGCAAATCCACAG	NA	NA	NA	NA	NA	NA	NA	NA	131288150	131288001	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_131288000_131288200
ONT_simulated_read_9532490	chr8	+	3168	14	FSM	ENSMUSG00000071064.16	ENST00000513320.5	3150	14	-18	0	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGACAGGAACAGACAAAAA	NA	NA	NA	NA	NA	NA	NA	NA	79755215	79917150	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_+_79755359_79796999_79797173_79802686_79803168_79818461_79818696_79844803_79845044_79847111_79847170_79863188_79863293_79902461_79902600_79905536_79905709_79906673_79906841_79912226_79912419_79912804_79912983_79914777_79914811_79916295
ONT_simulated_read_9532626	chr19	-	1894	1	ISM	ENSMUSG00000035173.15	ENSMUST00000118592.8	6445	16	31144	1672	22637	-1672	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCTGTCTCCTCGGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	56779478	56777584	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_56777600_56779500
ONT_simulated_read_9533051	chr17	+	1765	9	ISM	ENSMUSG00000024180.15	ENSMUST00000128597.3	2433	12	1198	-61	1198	60	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTCCTCTGAAGGTCACA	NA	NA	NA	NA	NA	NA	NA	NA	26336802	26341382	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_26336982_26337083_26337404_26337835_26337927_26338006_26338131_26338372_26338510_26339257_26339437_26339512_26339660_26340513_26340631_26340911
ONT_simulated_read_9534776	chr7	+	508	5	ISM	ENSMUSG00000030870.13	ENSMUST00000033158.6	4849	7	1724	3583	1455	-3583	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGAGAGGTCCGCAGCATC	NA	NA	NA	NA	NA	NA	NA	NA	121668121	121677834	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_121668213_121670924_121670991_121671132_121671239_121675330_121675414_121677672
ONT_simulated_read_953583	chr12	-	1104	1	NIC	ENSMUSG00000021253.8	novel	3383	7	NA	NA	21102	-91	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTGTATAAATAAATATT	NA	NA	NA	NA	NA	NA	NA	NA	86104713	86103609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr12_-_86103600_86104700
ONT_simulated_read_95371	chr10	-	1346	4	ISM	ENSMUSG00000019792.9	ENSMUST00000019927.7	2359	13	41513	0	41513	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCCTATTTGATTTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	30435232	30410220	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159
ONT_simulated_read_9537707	chr7	-	1051	4	ISM	ENSMUSG00000030557.18	ENSMUST00000032776.15	2476	11	121013	414	120996	-316	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACCCTGTAGAAACAGAC	NA	NA	NA	NA	NA	NA	NA	NA	66901593	66884368	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_66884977_66886271_66886399_66890061_66890189_66901404
ONT_simulated_read_9543030	chr12	-	145	1	ISM	ENSMUSG00000002996.18	ENSMUST00000172314.9	3142	11	23036	1101	22109	-1101	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAATGGGTGAGGATTGC	NA	NA	NA	NA	NA	NA	NA	NA	31977498	31977353	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_31977400_31977500
ONT_simulated_read_9543778	chr19	-	2022	1	FSM	ENSMUSG00002076852.1	ENSMUST00020181828.1	152	1	0	-1870	0	1870	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAACTGCAGGTTGGTCG	NA	NA	NA	NA	NA	NA	NA	NA	5894465	5892443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr19_-_5892400_5894500
ONT_simulated_read_9545550	chr5	-	2381	4	ISM	ENSMUSG00000037822.13	ENSMUST00000121661.8	1056	5	24558	-1444	-7933	1444	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGGAGACAATGTGGATA	NA	NA	NA	NA	NA	NA	NA	NA	65625845	65605701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735
ONT_simulated_read_9545602	chrX	+	1851	8	ISM	ENSMUSG00000037369.18	ENST00000543216.6	5528	27	83653	15881	83653	-15881	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATAAAGACCACTCAGACA	NA	NA	NA	NA	NA	NA	NA	NA	18112534	18130209	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_18112656_18114508_18114599_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186
ONT_simulated_read_9548877	chr14	+	814	6	ISM	ENSMUSG00000022009.2	ENSMUST00000022586.2	3974	10	0	12829	0	-12829	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGTGTTGACAACCACA	NA	NA	NA	NA	NA	NA	NA	NA	76348330	76361990	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_76348767_76349363_76349438_76351614_76351714_76352417_76352481_76353223_76353301_76361925
ONT_simulated_read_9550197	chrX	+	1267	3	FSM	ENSMUSG00000073008.12	ENST00000645147.2	3093	3	319	1507	0	-1507	multi-exon	FALSE	canonical	NA	NA	NA	NA	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCTTTGTGGATCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	106299983	106336687	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_+_106300106_106312487_106312574_106335628
ONT_simulated_read_9550572	chr10	-	1422	6	ISM	ENSMUSG00000020166.16	ENSMUST00000164088.8	2618	14	50947	189	50947	155	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGATTTTCAGCAGCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	116334121	116321258	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990
ONT_simulated_read_9550968	chr7	-	282	4	ISM	ENSMUSG00000074358.10	ENSMUST00000098780.10	2022	14	18063	222	18063	-222	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGAACCGGCTGGACACG	NA	NA	NA	NA	NA	NA	NA	NA	18626277	18625029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198
ONT_simulated_read_9554307	chr17	-	479	4	ISM	ENSMUSG00000024218.14	ENSMUST00000025057.5	1220	5	0	1479	0	-947	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACCTCTGTGTCTCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	28126698	28121580	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_28121599_28122074_28122163_28124235_28124385_28126474
ONT_simulated_read_9554570	chr13	-	180	1	Intergenic	novelGene_2	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATTATTTCCTAAGATAC	NA	NA	NA	NA	NA	NA	NA	NA	12632386	12632206	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Intergenic_chr13_-_12632200_12632400
ONT_simulated_read_9554943	chr7	-	1091	8	ISM	ENSMUSG00000030718.10	ENSMUST00000032963.10	2772	14	69	14328	69	-14328	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCCGTGTATCCATGGTC	NA	NA	NA	NA	NA	NA	NA	NA	100021445	99990271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_99990304_99991052_99991144_99994158_99994314_99997011_99997064_99997328_99997387_100003915_100004009_100004474_100004569_100020929
ONT_simulated_read_955680	chr11	-	948	1	ISM	ENSMUSG00000020844.7	ENSMUST00000021204.4	2755	8	140413	582	140413	-582	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGGGCTTCTCTGTGGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	76149553	76148605	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_76148600_76149600
ONT_simulated_read_9560208	chr6	-	479	4	FSM	ENSMUSG00000001158.14	ENST00000409116.5	504	4	12	13	12	-13	multi-exon	FALSE	canonical	NA	NA	NA	NA	1239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTATTTATGACACCCAG	NA	NA	NA	NA	NA	NA	NA	NA	86659947	86652386	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr6_-_86652563_86657888_86657969_86658572_86658686_86659837
ONT_simulated_read_9563781	chr1	-	2553	2	ISM	ENSMUSG00000026393.11	ENSMUST00000027642.5	3737	8	103966	530	103966	-530	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	163	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACAGGTCAAATTAAAGGT	NA	NA	NA	NA	NA	NA	NA	NA	138443446	138412379	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_138414849_138443362
ONT_simulated_read_9564044	chr11	-	609	1	ISM	ENSMUSG00000039055.5	ENST00000393271.6	2138	8	5348	0	5348	0	mono-exon	FALSE	NA	NA	NA	NA	NA	269	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAGCTTGGAGGAAGAC	NA	NA	NA	NA	NA	NA	NA	NA	94536430	94535821	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_94535800_94536400
ONT_simulated_read_9567654	chr3	-	802	6	FSM	ENSMUSG00000027669.15	ENST00000466899.6	828	6	26	0	26	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGGTGACTATATATAAAA	NA	NA	NA	NA	NA	NA	NA	NA	32650508	32639152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_32639376_32643857_32644060_32644145_32644213_32645259_32645423_32647306_32647371_32650425
ONT_simulated_read_9571833	chr19	+	1229	1	ISM	ENSMUSG00000064105.14	ENSMUST00000099373.12	4955	8	9	117359	1	-115529	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCGGAGAAATCGTGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	46750043	46751272	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_46750000_46751300
ONT_simulated_read_9572351	chr18	-	1149	6	ISM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	11558	560	11465	-560	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	146	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTATGGTCTGACATC	NA	NA	NA	NA	NA	NA	NA	NA	64638121	64633288	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918
ONT_simulated_read_9576349	chr2	-	1106	1	NIC	ENSMUSG00000036752.5	novel	1598	4	NA	NA	1224	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1206	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCACAGCCTGTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	25113381	25112275	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_25112300_25113400
ONT_simulated_read_9578373	chr1	+	1396	11	ISM	ENSMUSG00000026253.15	ENSMUST00000027470.14	2780	12	263	1316	263	-1316	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTTCATCTGTGGCACT	NA	NA	NA	NA	NA	NA	NA	NA	87133795	87139100	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_87133937_87134189_87134235_87134371_87134482_87135108_87135265_87135929_87136028_87136736_87136938_87137148_87137264_87137485_87137601_87138245_87138463_87138624_87138759_87139036
ONT_simulated_read_95796	chr8	-	1268	1	ISM	ENSMUSG00000031482.10	ENSMUST00000033871.8	3430	7	20625	1154	20625	-1154	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTTATTAAATTAGGGTA	NA	NA	NA	NA	NA	NA	NA	NA	22867988	22866720	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_22866700_22868000
ONT_simulated_read_9580937	chr10	-	561	4	ISM	ENSMUSG00000056758.15	ENSMUST00000072777.14	3710	5	3135	2628	3135	-2628	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGGTGGGCTTAATCAG	NA	NA	NA	NA	NA	NA	NA	NA	120309239	120199807	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_120200202_120210572_120210606_120298568_120298620_120309156
ONT_simulated_read_9581281	chr7	+	2237	14	ISM	ENSMUSG00000030683.12	ENSMUST00000106332.3	2852	18	2901	-80	2890	80	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTACAACTCTTGGGGC	NA	NA	NA	NA	NA	NA	NA	NA	126553038	126569522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_126553089_126557440_126557627_126558218_126558388_126558962_126559127_126560908_126561110_126561524_126561664_126562436_126562634_126562734_126562930_126565896_126566089_126566185_126566378_126566878_126566918_126567098_126567217_126567331_126567429_126569224
ONT_simulated_read_9581342	chr16	-	1482	7	ISM	ENSMUSG00000038168.6	ENSMUST00000039990.6	3283	15	133379	391	133379	-391	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAATCACAGAGAACAGCA	NA	NA	NA	NA	NA	NA	NA	NA	25791155	25778428	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_25779201_25784473_25784615_25787478_25787555_25788653_25788772_25789581_25789733_25790352_25790449_25791027
ONT_simulated_read_9583306	chr5	-	686	1	NIC	ENSMUSG00000057541.15	novel	3407	16	NA	NA	37581	-636	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGGTTAGTCTATCA	NA	NA	NA	NA	NA	NA	NA	NA	23946975	23946289	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr5_-_23946300_23947000
ONT_simulated_read_9586065	chr4	+	582	3	ISM	ENSMUSG00000029033.17	ENST00000354700.10	3494	21	8794	930	8794	-930	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCCTCACTCCTGCTTTTC	NA	NA	NA	NA	NA	NA	NA	NA	155989815	155990579	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_155989977_155990064_155990176_155990269
ONT_simulated_read_959078	chr1	-	443	2	ISM	ENSMUSG00000057335.12	ENST00000490813.5	1032	7	13163	5	13163	-5	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	703	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAATCTTGTTATCTTTGT	NA	NA	NA	NA	NA	NA	NA	NA	176564455	176563150	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_176563548_176564409
ONT_simulated_read_9592170	chr7	-	2930	20	ISM	ENSMUSG00000005610.18	ENSMUST00000162415.9	7995	22	2074	4684	2061	-502	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAGCAGAGGCAGTCTAT	NA	NA	NA	NA	NA	NA	NA	NA	110680163	110671640	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105
ONT_simulated_read_9594566	chr13	+	1407	13	ISM	ENSMUSG00000021686.7	ENSMUST00000022196.5	4021	27	0	115335	0	-115335	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCAGCCACTATTCAGAC	NA	NA	NA	NA	NA	NA	NA	NA	94495467	94587490	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_94495740_94527299_94527376_94531226_94531302_94539845_94539942_94540454_94540616_94545284_94545352_94554468_94554652_94576762_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585024_94587460
ONT_simulated_read_9595707	chr4	-	372	1	NIC	ENSMUSG00000028741.14	novel	1221	8	NA	NA	4492	0	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTTTTTTTGTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	139075117	139074745	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_139074700_139075100
ONT_simulated_read_9599711	chr7	+	333	1	ISM	ENSMUSG00000059070.17	ENSMUST00000209287.2	1027	6	0	2339	0	-2334	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCTACGATGAGCGGAGC	NA	NA	NA	NA	NA	NA	NA	NA	45367580	45367913	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_45367600_45367900
ONT_simulated_read_9600444	chr4	-	1302	1	FSM	ENSMUSG00000052684.5	ENSMUST00000107094.2	3189	1	664	1223	664	-1223	mono-exon	FALSE	NA	NA	NA	NA	NA	332	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGGCTGAGGGGCAATGG	NA	NA	NA	NA	NA	NA	NA	NA	94939795	94938493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_94938500_94939800
ONT_simulated_read_9600539	chr11	+	917	1	ISM	ENSMUSG00000000686.12	ENSMUST00000094004.5	2662	2	3497	511	3497	-511	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTGGTAGCCAGGTTA	NA	NA	NA	NA	NA	NA	NA	NA	77409443	77410360	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_77409400_77410400
ONT_simulated_read_9602082	chr16	+	1605	14	ISM	ENSMUSG00000045983.17	ENSMUST00000115460.8	5638	32	10573	607	10573	-274	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGATGAGGACGTGGTGA	NA	NA	NA	NA	NA	NA	NA	NA	20502839	20511024	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ONT_simulated_read_9605073	chr14	-	969	1	ISM	ENSMUSG00000035953.15	ENSMUST00000160835.9	2755	7	2812	1001	2775	146	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGGAGCACATACAAAACCA	NA	NA	NA	NA	NA	NA	NA	NA	51165494	51164525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_51164500_51165500
ONT_simulated_read_9606885	chr11	+	1419	5	NIC	ENSMUSG00000040938.17	novel	1754	5	NA	NA	89	-243	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTCCTGGTGTGCAGC	NA	NA	NA	NA	NA	NA	NA	NA	70104824	70106995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_+_70105091_70105330_70105539_70105780_70105925_70106109_70106878_70106962
ONT_simulated_read_9607940	chrX	-	507	1	ISM	ENSMUSG00000067567.13	ENSMUST00000087916.11	1936	11	220214	0	147454	0	mono-exon	FALSE	NA	NA	NA	NA	NA	239	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCGTCCCACCGCTCTGT	NA	NA	NA	NA	NA	NA	NA	NA	101328751	101328244	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_101328200_101328800
ONT_simulated_read_9609032	chr8	-	215	1	ISM	ENSMUSG00000058833.12	ENSMUST00000075175.12	671	5	2243	0	2228	0	mono-exon	FALSE	NA	NA	NA	NA	NA	247	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	NA	NA	NA	NA	NA	NA	NA	70957159	70956944	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_70956900_70957200
ONT_simulated_read_9613845	chr1	+	989	9	ISM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	140	46529	140	-46529	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAAAAAGGAAGCCAGTT	NA	NA	NA	NA	NA	NA	NA	NA	185095380	185114028	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996
ONT_simulated_read_9614621	chr9	-	767	9	ISM	ENSMUSG00000032503.19	ENSMUST00000162065.8	2996	18	2203	78242	2203	17462	internal_fragment	FALSE	canonical	NA	NA	NA	NA	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTGGCCAGACCACCAGC	NA	NA	NA	NA	NA	NA	NA	NA	112012634	111972543	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_111972607_111976490_111976551_111978402_111978441_111986757_111986867_112005162_112005304_112006001_112006062_112006725_112006805_112008095_112008241_112012562
ONT_simulated_read_96150	chr17	-	898	1	ISM	ENSMUSG00000023460.14	ENSMUST00000167962.2	2010	6	23878	383	23878	-383	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATCCTGTTTAAAGGGAT	NA	NA	NA	NA	NA	NA	NA	NA	66802787	66801889	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_66801900_66802800
ONT_simulated_read_9615597	chr7	-	711	3	ISM	ENSMUSG00000030641.11	ENSMUST00000032877.11	3387	6	11770	2348	11770	-2348	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAGTTCTAAGAACTGCC	NA	NA	NA	NA	NA	NA	NA	NA	92511685	92509080	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_92509521_92510607_92510726_92511532
ONT_simulated_read_9618462	chr15	-	467	3	ISM	ENSMUSG00000022372.15	ENST00000517648.5	546	4	2525	-7	2525	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1610	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTGGCTTGTACACACA	NA	NA	NA	NA	NA	NA	NA	NA	66661635	66654390	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_66654605_66655457_66655606_66661530
ONT_simulated_read_9618849	chr17	-	1808	7	NIC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	472	-18370	intron_retention	FALSE	canonical	NA	NA	NA	NA	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAGACCGATGCACGTCAA	NA	NA	NA	NA	NA	NA	NA	NA	33905362	33883582	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889054_33889108_33896247_33896415_33904240
ONT_simulated_read_9619833	chrX	+	1415	10	ISM	ENSMUSG00000031060.17	ENSMUST00000115374.8	3564	24	163	5342	2	-5125	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGAGGCTTCGCCTTCATC	NA	NA	NA	NA	NA	NA	NA	NA	20484023	20511798	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675
ONT_simulated_read_9621570	chr8	-	290	3	ISM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	6640	4580	6640	-4580	internal_fragment	FALSE	canonical	NA	NA	NA	NA	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACGTGTTGGCGGTGAACG	NA	NA	NA	NA	NA	NA	NA	NA	108145041	108143700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_108143724_108144687_108144859_108144945
ONT_simulated_read_9622762	chr7	+	736	3	ISM	ENSMUSG00000033510.15	ENST00000678495.1	2946	11	103932	939	103904	-939	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACCTGACCAGCGCGCAG	NA	NA	NA	NA	NA	NA	NA	NA	63404459	63407673	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_63404495_63404663_63404749_63407057
ONT_simulated_read_9623147	chr13	-	885	1	NIC	ENSMUSG00000044792.8	novel	1942	4	NA	NA	12806	-711	mono-exon	FALSE	NA	NA	NA	NA	NA	425	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTCTCCCTTCCTCGAGG	NA	NA	NA	NA	NA	NA	NA	NA	59904818	59903933	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr13_-_59903900_59904800
ONT_simulated_read_9624263	chr11	-	701	5	ISM	ENSMUSG00000018761.15	ENSMUST00000018905.12	1321	7	3943	381	3943	-381	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	166	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGGAGCAGTAAAGCTTG	NA	NA	NA	NA	NA	NA	NA	NA	69549525	69547903	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548848_69549391
ONT_simulated_read_9624333	chr13	+	2119	1	ISM	ENSMUSG00000021671.10	ENSMUST00000099295.6	5183	13	26239	1086	17885	-1086	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGACATCCTAATGTAA	NA	NA	NA	NA	NA	NA	NA	NA	96551040	96553159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_96551000_96553200
ONT_simulated_read_9636843	chr14	-	462	5	ISM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	60763	6087	60763	-6087	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTTCTTACAACCTGGAA	NA	NA	NA	NA	NA	NA	NA	NA	45706812	45702338	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696
ONT_simulated_read_9637516	chr16	-	418	1	FSM	ENSMUSG00000084304.2	ENSMUST00000120290.2	325	1	0	-93	0	93	mono-exon	FALSE	NA	NA	NA	NA	NA	237	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGTGGTTCTTTTTATGC	NA	NA	NA	NA	NA	NA	NA	NA	4138544	4138126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_-_4138100_4138500
ONT_simulated_read_9638206	chr14	-	476	4	ISM	ENSMUSG00000021810.4	ENST00000430082.6	1932	13	9701	9288	9701	-9288	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACCAGGAGAGACTAGAAAT	NA	NA	NA	NA	NA	NA	NA	NA	20387143	20380083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_20380108_20383396_20383526_20386136_20386266_20386949
ONT_simulated_read_9638264	chr15	-	445	5	ISM	ENSMUSG00000000555.9	ENSMUST00000023128.8	4382	30	10797	8964	10797	-8964	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCTTCCCAGGTTTTGC	NA	NA	NA	NA	NA	NA	NA	NA	103264393	103261676	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_103261762_103262000_103262210_103262473_103262527_103262694_103262752_103264352
ONT_simulated_read_9639659	chr7	-	172	1	ISM	ENSMUSG00000000215.12	ENSMUST00000105931.8	472	3	858	0	706	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGTGTGTATGTGCATG	NA	NA	NA	NA	NA	NA	NA	NA	142232564	142232392	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_142232400_142232600
ONT_simulated_read_9640192	chr4	+	1916	6	FSM	ENSMUSG00000028437.15	ENST00000625521.2	1961	6	45	0	45	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCTTTCAGAAGGAATAC	NA	NA	NA	NA	NA	NA	NA	NA	41349047	41389078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_+_41349232_41371724_41371850_41378946_41379871_41387174_41387358_41388095_41388198_41388680
ONT_simulated_read_9641538	chr11	-	1320	7	ISM	ENSMUSG00000020745.16	ENSMUST00000102520.9	5789	11	34675	3440	34675	-3432	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	115	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAACTAGGGCACTAAAC	NA	NA	NA	NA	NA	NA	NA	NA	74580009	74568215	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802
ONT_simulated_read_9642076	chr11	-	289	3	ISM	ENSMUSG00000020774.10	ENSMUST00000021119.9	1530	6	4752	3734	4752	-3734	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATCCTAATCTGCAGGTA	NA	NA	NA	NA	NA	NA	NA	NA	73210708	73199551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_73199645_73204335_73204444_73210620
ONT_simulated_read_9643893	chr10	+	299	2	FSM	ENSMUSG00000020087.6	ENST00000335494.5	1610	2	1052	259	1052	-259	multi-exon	FALSE	canonical	NA	NA	NA	NA	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGAGCAAGCTCTGAAGCTA	NA	NA	NA	NA	NA	NA	NA	NA	61532425	61538015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr10_+_61532522_61537812
ONT_simulated_read_9644362	chr6	+	1386	10	ISM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	34	24066	34	-24066	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACTGAGAAGAGAAGTTG	NA	NA	NA	NA	NA	NA	NA	NA	52690747	52719699	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676
ONT_simulated_read_9645919	chr18	-	1101	4	ISM	ENSMUSG00000024293.17	ENSMUST00000145320.2	2249	11	33018	339	33016	-339	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGGAGAGCTCCAAGTG	NA	NA	NA	NA	NA	NA	NA	NA	10577091	10566968	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000
ONT_simulated_read_9646529	chr16	-	246	1	ISM	ENSMUSG00000003528.16	ENSMUST00000003622.16	1666	9	2292	459	2292	-459	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTCTGTATATCCCAT	NA	NA	NA	NA	NA	NA	NA	NA	17743791	17743545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_17743500_17743800
ONT_simulated_read_9650397	chr4	-	1181	4	ISM	ENSMUSG00000036002.13	ENSMUST00000107958.8	3280	9	3483	2075	3483	-2075	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTACTGCAGAGATTGGA	NA	NA	NA	NA	NA	NA	NA	NA	43036805	43034488	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_43034535_43034658_43034765_43034942_43035002_43035835
ONT_simulated_read_965239	chr2	-	1089	2	ISM	ENSMUSG00000036752.5	ENST00000568866.5	1274	3	384	102	384	-58	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	704	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCTACAGCTGAGGAAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	25114221	25112377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_25113381_25114135
ONT_simulated_read_9652895	chr7	-	2024	5	ISM	ENSMUSG00000030629.16	ENSMUST00000069537.3	1658	8	45357	-739	398	-549	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATTAGAAAGAGATTAACTA	NA	NA	NA	NA	NA	NA	NA	NA	84283202	84263522	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092
ONT_simulated_read_9655194	chr1	+	1615	10	ISM	ENSMUSG00000023150.15	ENSMUST00000023918.13	3511	15	32	4243	0	3380	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCAGAACGCTGGGTGT	NA	NA	NA	NA	NA	NA	NA	NA	151220259	151235930	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151231879_151231988_151235372_151235503_151235703
ONT_simulated_read_9655752	chr16	+	179	2	ISM	ENSMUSG00000022865.15	ENST00000400166.5	877	4	3869	3129	3869	-2969	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAAATGACTTCAAGCTA	NA	NA	NA	NA	NA	NA	NA	NA	78125912	78130294	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_78126047_78130249
ONT_simulated_read_9655940	chr2	-	1409	11	ISM	ENSMUSG00000074796.11	ENST00000642402.1	2810	17	1374	1240	1374	-1226	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCATCAATACGGGGCTG	NA	NA	NA	NA	NA	NA	NA	NA	130532837	130527280	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752
ONT_simulated_read_9656418	chr14	+	490	5	FSM	ENSMUSG00000022210.8	ENST00000397075.7	665	5	-17	192	-12	-192	multi-exon	FALSE	canonical	NA	NA	NA	NA	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCAGTTACATCAATGGAG	NA	NA	NA	NA	NA	NA	NA	NA	55716390	55727329	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55725616_55725673_55727275
ONT_simulated_read_9657145	chr4	+	357	4	ISM	ENSMUSG00000028691.13	ENSMUST00000135573.8	2294	6	55	7916	55	-6366	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATTGGGACCCATGAACA	NA	NA	NA	NA	NA	NA	NA	NA	116542795	116550103	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079
ONT_simulated_read_9657580	chr17	-	1862	6	ISM	ENSMUSG00000024142.16	ENSMUST00000234335.2	1574	9	1034	-552	1034	552	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCTCACCCTGGAAGTGT	NA	NA	NA	NA	NA	NA	NA	NA	24696978	24693723	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836
ONT_simulated_read_965949	chr4	-	366	1	FSM	ENSMUSG00000084260.2	ENSMUST00000119463.2	582	1	0	216	0	-216	mono-exon	FALSE	NA	NA	NA	NA	NA	499	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGATGAGCACACAAGACG	NA	NA	NA	NA	NA	NA	NA	NA	117586496	117586130	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_117586100_117586500
ONT_simulated_read_9660187	chr11	-	463	1	ISM	ENSMUSG00000017132.18	ENSMUST00000106302.9	3119	13	46648	1466	27601	-1457	mono-exon	FALSE	NA	NA	NA	NA	NA	308	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGGGGAAAGGAAGAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	118056920	118056457	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_118056500_118056900
ONT_simulated_read_9660560	chr4	-	1563	1	ISM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	25509	1199	25509	-1199	mono-exon	FALSE	NA	NA	NA	NA	NA	243	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAAGGCTCTTTTTCCCT	NA	NA	NA	NA	NA	NA	NA	NA	129203654	129202091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_129202100_129203700
ONT_simulated_read_9661645	chr11	+	399	3	ISM	ENSMUSG00000020836.16	ENSMUST00000021190.9	1418	10	0	3231	0	-3231	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGCATCCTGTCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	77354736	77357096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_77354937_77356491_77356615_77357020
ONT_simulated_read_9662773	chr2	+	380	4	ISM	ENSMUSG00000027429.17	ENSMUST00000028916.15	2779	20	25	26159	25	-26111	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGGTGAATCAACCTGCT	NA	NA	NA	NA	NA	NA	NA	NA	144398200	144406510	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_144398263_144401126_144401362_144404051_144404110_144406485
ONT_simulated_read_9666674	chr15	-	1342	3	ISM	ENSMUSG00000079020.10	ENSMUST00000132607.2	2457	7	9465	2797	9465	-2797	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGACATCAAGGAGGTAC	NA	NA	NA	NA	NA	NA	NA	NA	73458913	73456202	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_73456399_73457136_73457237_73457867
ONT_simulated_read_9668237	chr7	+	574	3	ISM	ENSMUSG00000030609.19	ENSMUST00000107423.2	2230	4	6570	1114	6570	-1114	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGCCCGACAGCAGCACT	NA	NA	NA	NA	NA	NA	NA	NA	78552326	78557012	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_78552579_78555590_78555792_78556891
ONT_simulated_read_9670071	chr8	+	791	6	NIC	ENSMUSG00000003573.16	novel	2608	10	NA	NA	539	1	combination_of_known_junctions	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCCATGGAGTGTCTGC	NA	NA	NA	NA	NA	NA	NA	NA	70738580	70745815	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr8_+_70738713_70742701_70742824_70743656_70743814_70743967_70744079_70744175_70744254_70745624
ONT_simulated_read_9672124	chr1	-	596	5	ISM	ENSMUSG00000041926.16	ENSMUST00000077340.14	2288	11	12355	2637	12355	-2637	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTGGGGACTCACTCAT	NA	NA	NA	NA	NA	NA	NA	NA	135199467	135193086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_135193146_135194607_135194717_135194907_135195021_135195820_135195935_135199266
ONT_simulated_read_9676052	chr14	+	1137	3	ISM	ENSMUSG00000022175.10	ENSMUST00000022782.10	4228	7	3416	2441	3416	-2441	internal_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAGGCTGAGATTGTGC	NA	NA	NA	NA	NA	NA	NA	NA	54705009	54706513	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_54705108_54705220_54706239_54706492
ONT_simulated_read_9676426	chr11	-	443	1	ISM	ENSMUSG00000020422.15	ENSMUST00000239091.2	7897	31	190249	2544	165956	-2544	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAAGGCTGTCCCCAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	8384638	8384195	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_8384200_8384600
ONT_simulated_read_9680176	chr5	+	1937	8	ISM	ENSMUSG00000029106.15	ENSMUST00000001108.11	3898	16	40384	843	12905	646	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCACATTCAGGCGCTCA	NA	NA	NA	NA	NA	NA	NA	NA	34771590	34788806	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_34771705_34773906_34774252_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34786479_34786517_34787813
ONT_simulated_read_9681002	chr4	-	533	1	ISM	ENSMUSG00000028649.22	ENSMUST00000097897.11	23495	98	333250	945	176349	-858	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTATAAACCTGCTTTATC	NA	NA	NA	NA	NA	NA	NA	NA	123244903	123244370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_123244400_123244900
ONT_simulated_read_9682180	chr7	-	455	1	ISM	ENSMUSG00000000031.17	ENSMUST00000136359.8	2286	5	2055	105	2055	-105	mono-exon	FALSE	NA	NA	NA	NA	NA	239	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCCATCATAAAGTGTTCA	NA	NA	NA	NA	NA	NA	NA	NA	142129825	142129370	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_142129400_142129800
ONT_simulated_read_9682335	chr17	-	1592	10	ISM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	11485	1743	11485	-1743	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTCTGTACACAGTGACA	NA	NA	NA	NA	NA	NA	NA	NA	24458898	24442914	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820
ONT_simulated_read_968246	chrX	+	641	5	ISM	ENSMUSG00000045103.20	ENST00000474231.5	5148	35	2	829512	2	-698139	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATCACCTGCTTCTGTGG	NA	NA	NA	NA	NA	NA	NA	NA	83120254	83417064	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_83120352_83315557_83315734_83353404_83353547_83356082_83356233_83416988
ONT_simulated_read_9683337	chr7	-	296	1	ISM	ENSMUSG00000030979.14	ENSMUST00000106144.8	1045	7	16404	226	16303	-226	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAACCTGCAACACTCCC	NA	NA	NA	NA	NA	NA	NA	NA	133294384	133294088	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_133294100_133294400
ONT_simulated_read_9688680	chr9	-	688	8	ISM	ENSMUSG00000032382.15	ENSMUST00000034946.15	2073	15	19952	5155	19831	-4767	internal_fragment	FALSE	canonical	NA	NA	NA	NA	96	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGCGCTCTCCCAACTGGC	NA	NA	NA	NA	NA	NA	NA	NA	66012216	66000569	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154
ONT_simulated_read_9689395	chr1	-	317	5	ISM	ENSMUSG00000026466.17	ENSMUST00000169241.8	3716	10	12440	3040	12440	-858	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCAGTGGGACTATTTTG	NA	NA	NA	NA	NA	NA	NA	NA	155898123	155883384	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155898045
ONT_simulated_read_9689510	chr1	-	459	4	ISM	ENSMUSG00000041406.15	ENSMUST00000045876.8	3179	24	5003	32290	5003	-32290	internal_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCAGTAGATGAGAATAAC	NA	NA	NA	NA	NA	NA	NA	NA	163817362	163813612	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_163813737_163814455_163814597_163815174_163815280_163817273
ONT_simulated_read_9689748	chr3	+	662	4	ISM	ENSMUSG00000027878.12	ENSMUST00000079812.8	10500	34	0	77689	0	-250	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAATGCCCTGCAGGCCT	NA	NA	NA	NA	NA	NA	NA	NA	97920853	97979988	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_97921088_97955043_97955126_97978175_97978436_97979902
ONT_simulated_read_969059	chr10	-	796	9	ISM	ENSMUSG00000001120.16	ENST00000400310.5	1056	12	3052	-1	3052	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCCTCCACTGCACACATC	NA	NA	NA	NA	NA	NA	NA	NA	76633698	76598314	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_76598361_76599055_76599226_76603697_76603751_76606794_76606874_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628
ONT_simulated_read_9694357	chr9	-	430	1	FSM	ENSMUSG00000053128.16	ENSMUST00000056328.6	2724	1	578	1716	108	-1709	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAACATCTGCCTCATCAG	NA	NA	NA	NA	NA	NA	NA	NA	44024223	44023793	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_-_44023800_44024200
ONT_simulated_read_9699386	chr17	+	3702	11	ISM	ENSMUSG00000039218.18	ENSMUST00000190686.7	8864	15	47	7133	13	-7133	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATTAAAAGAAAGAAGTGGA	NA	NA	NA	NA	NA	NA	NA	NA	24022207	24036577	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_24022373_24025905_24026177_24027039_24027148_24027327_24027493_24028942_24029021_24029386_24029450_24029712_24029746_24030004_24030056_24030612_24030706_24031401_24031595_24034095
ONT_simulated_read_9701196	chr7	-	1812	15	ISM	ENSMUSG00000005610.18	ENSMUST00000161051.8	3548	22	2061	2889	2061	-2889	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGCTCAACCACTGGAG	NA	NA	NA	NA	NA	NA	NA	NA	110680163	110674027	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105
ONT_simulated_read_9701848	chr17	-	732	1	ISM	ENSMUSG00000005823.10	ENSMUST00000233568.2	2405	17	12306	0	9734	0	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAAAAAACGATCTGT	NA	NA	NA	NA	NA	NA	NA	NA	57542366	57541634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_57541600_57542400
ONT_simulated_read_9703777	chr2	-	350	1	ISM	ENSMUSG00000027422.16	ENSMUST00000016072.12	5177	24	63362	157	63362	-157	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCAGGTGGTGAGTTCTC	NA	NA	NA	NA	NA	NA	NA	NA	143789821	143789471	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_143789500_143789800
ONT_simulated_read_9704030	chr6	-	736	1	NIC	ENSMUSG00000053768.14	novel	1550	8	NA	NA	207991	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGAATTATTAGTTTCTG	NA	NA	NA	NA	NA	NA	NA	NA	32829113	32828377	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_32828400_32829100
ONT_simulated_read_9707189	chr11	-	803	5	ISM	ENSMUSG00000020530.15	ENSMUST00000018547.9	2478	15	16478	5014	16478	-4903	internal_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAATCTTTTGGGGTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	84744994	84728700	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879
ONT_simulated_read_9707367	chrX	+	362	1	ISM	ENSMUSG00000083892.4	ENSMUST00000120711.2	789	2	0	435	0	-435	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAAGAACCTCACAAATTG	NA	NA	NA	NA	NA	NA	NA	NA	21013082	21013444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_21013100_21013400
ONT_simulated_read_9708022	chr1	-	669	6	ISM	ENSMUSG00000042699.12	ENST00000436565.2	3103	24	11	17357	11	-13110	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGTAATTGCTTTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	153359585	153351407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_153351456_153353786_153353936_153354611_153354725_153356877_153356996_153358487_153358629_153359485
ONT_simulated_read_9711718	chr11	-	476	1	NIC	ENSMUSG00000018287.13	novel	1159	7	NA	NA	4795	-208	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACTCAGGCTGGAGGAG	NA	NA	NA	NA	NA	NA	NA	NA	70555298	70554822	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_70554800_70555300
ONT_simulated_read_9714344	chr13	+	1218	12	ISM	ENSMUSG00000057069.8	ENSMUST00000221560.2	1964	16	34	5782	0	-5782	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTAAGGCCTGGCTTTTA	NA	NA	NA	NA	NA	NA	NA	NA	12580788	12615219	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_12581060_12589700_12589821_12594056_12594141_12595254_12595297_12596549_12596633_12598417_12598492_12605641_12605763_12605865_12605913_12608388_12608401_12610578_12610606_12614749_12614843_12614975
ONT_simulated_read_9714364	chr11	+	723	1	ISM	ENSMUSG00000034156.17	ENST00000343736.9	7549	31	46	24615	0	-24615	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGGAGAATGGTCTAGTC	NA	NA	NA	NA	NA	NA	NA	NA	87651412	87652135	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_87651400_87652100
ONT_simulated_read_97146	chr11	-	255	3	ISM	ENSMUSG00000020375.10	ENSMUST00000020643.4	2688	18	23219	15282	23219	-15282	internal_fragment	FALSE	canonical	NA	NA	NA	NA	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATGAAGTTGCTGGAGAA	NA	NA	NA	NA	NA	NA	NA	NA	50298733	50295394	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_50295449_50297193_50297311_50298649
ONT_simulated_read_971505	chr6	+	1329	8	ISM	ENSMUSG00000013736.17	ENSMUST00000057578.16	2283	9	47	3086	47	1707	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCGGATGGAAAAAGATGAAC	NA	NA	NA	NA	NA	NA	NA	NA	106746173	106756349	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_106746218_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146
ONT_simulated_read_9715666	chr18	-	1140	1	ISM	ENSMUSG00000033016.17	ENSMUST00000236310.2	4315	10	100173	656	100173	-273	mono-exon	FALSE	NA	NA	NA	NA	NA	563	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATAGCTCTCTGCTTCAT	NA	NA	NA	NA	NA	NA	NA	NA	80651215	80650075	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_80650100_80651200
ONT_simulated_read_9715932	chr10	-	668	3	ISM	ENSMUSG00000025350.16	ENSMUST00000026406.14	1258	5	1158	100	309	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGATTTTGAAAAGCAAGG	NA	NA	NA	NA	NA	NA	NA	NA	128754008	128749561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_128749806_128750003_128750168_128753748
ONT_simulated_read_9719875	chr12	-	2954	1	FSM	ENSMUSG00000112990.2	ENSMUST00000221845.2	3544	1	0	590	0	-590	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTGTTCATCACCAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	98618740	98615786	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_-_98615800_98618700
ONT_simulated_read_9721340	chr7	+	716	1	NIC	ENSMUSG00000030704.15	novel	3214	8	NA	NA	0	-32967	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGACTCCCCCGCTCCTGGC	NA	NA	NA	NA	NA	NA	NA	NA	100256792	100257508	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr7_+_100256800_100257500
ONT_simulated_read_9725723	chr11	-	1087	1	ISM	ENSMUSG00000036391.17	ENSMUST00000109097.9	6581	23	61417	1851	60973	520	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAACTTGATTTGTTAT	NA	NA	NA	NA	NA	NA	NA	NA	51586028	51584941	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_51584900_51586000
ONT_simulated_read_972588	chr10	-	2310	5	ISM	ENSMUSG00000036112.16	ENST00000261220.13	1817	10	20749	-1221	20749	-1217	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGCCTAAACTGTTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	93704824	93695567	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728
ONT_simulated_read_9730039	chr2	-	991	6	ISM	ENSMUSG00000026819.16	ENST00000683206.1	2704	11	2393	1571	2393	-1012	internal_fragment	FALSE	canonical	NA	NA	NA	NA	157	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGCCAACACTAAGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	32309219	32306083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_32306335_32306420_32306572_32307103_32307272_32307357_32307466_32307735_32307889_32309059
ONT_simulated_read_9730725	chr14	-	934	1	ISM	ENSMUSG00000063410.9	ENSMUST00000079817.8	2676	11	91996	62	91595	-62	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTATCATCTTCTCCAC	NA	NA	NA	NA	NA	NA	NA	NA	121524750	121523816	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_121523800_121524800
ONT_simulated_read_973286	chr17	-	854	3	ISM	ENSMUSG00000024018.19	ENSMUST00000128751.3	1397	4	11468	425	11433	-425	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGCTCACCAACATGTGC	NA	NA	NA	NA	NA	NA	NA	NA	29924550	29922730	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_29923444_29924244_29924298_29924462
ONT_simulated_read_9734567	chr19	-	751	10	ISM	ENSMUSG00000024878.10	ENSMUST00000025815.10	1929	15	13494	625	13380	39	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGATCCACTACCGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	24925471	24897904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24925432
ONT_simulated_read_9735443	chr16	+	1432	6	FSM	ENSMUSG00000022744.13	ENST00000394185.6	2139	6	88	619	20	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAAAAAAGTGAAAA	NA	NA	NA	NA	NA	NA	NA	NA	58548410	58553971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_58548448_58549520_58549587_58549800_58550111_58551664_58551776_58552943_58553082_58553201
ONT_simulated_read_9736457	chr2	-	316	3	ISM	ENSMUSG00000026924.18	ENSMUST00000114082.9	8797	31	9166	21717	9166	-21715	internal_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGACCCATACAGGAAG	NA	NA	NA	NA	NA	NA	NA	NA	26326060	26321159	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_26321241_26323342_26323441_26325923
ONT_simulated_read_9738222	chr4	-	2041	10	ISM	ENSMUSG00000028343.11	ENSMUST00000030028.5	2624	12	38223	335	38223	-335	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	314	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTGGTTCCCCACGCCT	NA	NA	NA	NA	NA	NA	NA	NA	48241335	48193657	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295
ONT_simulated_read_9740996	chr16	-	781	8	ISM	ENSMUSG00000022749.9	ENST00000344949.9	3577	18	38658	4281	25702	-2801	internal_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTCAGATGATGATAGGAA	NA	NA	NA	NA	NA	NA	NA	NA	57013089	56993502	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_56993523_56998294_56998384_57003213_57003354_57004742_57004850_57007000_57007044_57009624_57009796_57011836_57011930_57012971
ONT_simulated_read_9741368	chr10	-	1982	1	ISM	ENSMUSG00000020097.15	ENSMUST00000122259.8	4102	15	46680	341	46680	-341	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGTGACTTAAGAGTTTC	NA	NA	NA	NA	NA	NA	NA	NA	60936743	60934761	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_60934800_60936700
ONT_simulated_read_9741926	chr17	-	1037	1	NIC	ENSMUSG00000092074.3	novel	3321	5	NA	NA	6474	-1914	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGAACGCCTTGGTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	6361219	6360182	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_6360200_6361200
ONT_simulated_read_974202	chr16	-	1620	7	ISM	ENSMUSG00000022536.15	ENSMUST00000023189.15	3280	16	23256	837	23250	-837	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCTACCTGTTCAGCCTG	NA	NA	NA	NA	NA	NA	NA	NA	4844471	4832609	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844371
ONT_simulated_read_9742954	chr6	+	704	1	ISM	ENSMUSG00000038271.18	ENSMUST00000119527.8	2840	9	25	15813	15	-15807	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTGCCCTGTACAACGTGC	NA	NA	NA	NA	NA	NA	NA	NA	125122228	125122932	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_125122200_125122900
ONT_simulated_read_9745048	chr2	-	1157	1	ISM	ENSMUSG00000023391.9	ENSMUST00000024159.8	2473	3	1835	355	1835	-355	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACTATTAGCTCGAACTT	NA	NA	NA	NA	NA	NA	NA	NA	71375263	71374106	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_71374100_71375300
ONT_simulated_read_9746309	chr7	-	1439	9	ISM	ENSMUSG00000025474.10	ENST00000682905.1	2750	17	3826	5068	3826	-5068	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCCGACACATGTTCTAC	NA	NA	NA	NA	NA	NA	NA	NA	139609873	139581030	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739
ONT_simulated_read_9750815	chr10	+	1965	10	ISM	ENSMUSG00000019894.15	ENSMUST00000074204.12	3607	13	25607	860	25519	-858	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	372	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACAGTTTTAGACAGTTC	NA	NA	NA	NA	NA	NA	NA	NA	103229310	103254378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
ONT_simulated_read_975247	chrM	+	644	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	0	901	0	-901	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACAACTTTCTTTGATC	NA	NA	NA	NA	NA	NA	NA	NA	5327	5971	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrM_+_5300_6000
ONT_simulated_read_9754608	chr5	-	421	1	FSM	ENSMUSG00000104882.2	ENSMUST00000196173.2	421	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAATAAGGATTAAACTCT	NA	NA	NA	NA	NA	NA	NA	NA	28065436	28065015	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr5_-_28065000_28065400
ONT_simulated_read_9757069	chr3	+	948	7	ISM	ENSMUSG00000090210.8	ENST00000539363.2	3841	25	8408	530	8408	-530	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATTACCAGGAGTCAAATG	NA	NA	NA	NA	NA	NA	NA	NA	96564753	96570635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_96564828_96564969_96565084_96565274_96565356_96565488_96565603_96569139_96569236_96569910_96570025_96570280
ONT_simulated_read_9758023	chr4	-	1648	1	ISM	ENSMUSG00000037306.14	ENSMUST00000054096.13	4715	12	140488	465	140488	-465	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCACCTCACCTCTCTGG	NA	NA	NA	NA	NA	NA	NA	NA	134291113	134289465	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_134289500_134291100
ONT_simulated_read_9758893	chr3	+	1562	4	ISM	ENSMUSG00000063273.12	ENSMUST00000193266.6	7480	20	0	34459	0	-33937	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAGGGCTATAGGGTAAG	NA	NA	NA	NA	NA	NA	NA	NA	51322568	51349469	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326
ONT_simulated_read_97592	chr7	-	662	8	NNC	ENSMUSG00000030720.17	novel	945	11	NA	NA	1431	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACAGGAGTTGCTCGA	NA	NA	NA	NA	NA	NA	NA	NA	126178605	126171444	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr7_-_126171554_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178572
ONT_simulated_read_9760134	chr14	-	394	1	ISM	ENSMUSG00000115220.2	ENSMUST00000227218.2	673	2	373	0	373	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGCGAGCATCAGACTCTC	NA	NA	NA	NA	NA	NA	NA	NA	119220799	119220405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_119220400_119220800
ONT_simulated_read_9760878	chr3	-	756	7	ISM	ENSMUSG00000028064.18	ENST00000355014.6	2827	13	1037	12100	1037	-12100	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGTACAAGGAGCTGAACA	NA	NA	NA	NA	NA	NA	NA	NA	88359390	88355376	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_88355449_88356986_88357160_88357294_88357420_88357817_88357935_88358651_88358758_88358994_88359094_88359326
ONT_simulated_read_9764341	chr19	-	1346	11	NIC	ENSMUSG00000025085.17	novel	3123	24	NA	NA	57531	-32	combination_of_known_splicesites	FALSE	canonical	NA	NA	NA	NA	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTAAGAGTCAGCAAGTGC	NA	NA	NA	NA	NA	NA	NA	NA	57049814	57025330	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr19_-_57025770_57027838_57027920_57028918_57028994_57030346_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57035356_57035504_57037893_57037942_57039561_57039667_57049684
ONT_simulated_read_976486	chr10	-	1960	16	ISM	ENSMUSG00000020115.4	ENST00000650762.1	2231	18	6697	-1	6697	1	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGTGCTTTGGGGTGCTC	NA	NA	NA	NA	NA	NA	NA	NA	121407930	121382812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_121383094_121387155_121387228_121387391_121387499_121388104_121388202_121388312_121388415_121388933_121388974_121389649_121389727_121389807_121389930_121391891_121391971_121395751_121395844_121396145_121396205_121397481_121397679_121399830_121400011_121403933_121404045_121406535_121406697_121407747
ONT_simulated_read_9766133	chr8	+	823	6	ISM	ENSMUSG00000005481.19	ENSMUST00000019576.15	1656	11	0	1570	0	-1570	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	163	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCAGTGTATGATGTTC	NA	NA	NA	NA	NA	NA	NA	NA	84441805	84448407	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362
ONT_simulated_read_9766244	chr16	-	1079	7	ISM	ENSMUSG00000037965.16	ENSMUST00000037633.16	3825	23	19832	12671	19832	-12671	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGTCAGAATTCTCCAAG	NA	NA	NA	NA	NA	NA	NA	NA	10974425	10967126	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_10967272_10968458_10968621_10969002_10969190_10969729_10969795_10970922_10971128_10973883_10974165_10974391
ONT_simulated_read_9767777	chr18	-	170	1	ISM	ENSMUSG00000047989.12	ENSMUST00000153360.8	2498	5	15295	1732	8255	-111	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGACTGACTGCACTTGTG	NA	NA	NA	NA	NA	NA	NA	NA	24239715	24239545	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_24239500_24239700
ONT_simulated_read_9770355	chr16	+	1276	11	ISM	ENSMUSG00000038084.17	ENST00000361908.8	4279	30	44	42143	12	-41176	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTAAAGATAGCTCTCG	NA	NA	NA	NA	NA	NA	NA	NA	29398209	29429518	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485
ONT_simulated_read_9774320	chr2	-	1023	1	ISM	ENSMUSG00000009614.17	ENSMUST00000102886.10	4521	21	57851	0	50299	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGTGGGGTACAGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	27079427	27078404	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_27078400_27079400
ONT_simulated_read_9775288	chr2	+	1300	2	ISM	ENSMUSG00000094475.8	ENSMUST00000185834.3	1494	3	0	1351	0	1108	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATCAGTGTAAGAAAGATT	NA	NA	NA	NA	NA	NA	NA	NA	175442797	175444302	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_175442925_175443129
ONT_simulated_read_9779181	chr15	-	1744	1	ISM	ENSMUSG00000022358.8	ENSMUST00000022986.8	6976	9	33391	3919	33086	1437	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGAATTTAAAGGTTCG	NA	NA	NA	NA	NA	NA	NA	NA	58044937	58043193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_58043200_58044900
ONT_simulated_read_9780073	chr13	-	248	1	ISM	ENSMUSG00000008859.9	ENSMUST00000009003.9	2688	5	61763	1658	61763	-1658	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGTCAAATTCACTTAAAA	NA	NA	NA	NA	NA	NA	NA	NA	18057061	18056813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_18056800_18057100
ONT_simulated_read_9781428	chr7	-	1232	1	ISM	ENSMUSG00000078813.4	ENSMUST00000019878.8	2222	4	4511	0	4511	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAGGCACCATCAATACT	NA	NA	NA	NA	NA	NA	NA	NA	3664328	3663096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_3663100_3664300
ONT_simulated_read_978447	chr8	+	3204	21	ISM	ENSMUSG00000025812.19	ENST00000350537.9	4703	25	241943	1800	0	-320	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCCCTGGTGAAGGCTTCC	NA	NA	NA	NA	NA	NA	NA	NA	128032790	128336966	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036_128136099_128137209_128137255_128142050_128142279_128153002_128153235_128186754_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
ONT_simulated_read_9787745	chr11	+	1387	6	ISM	ENSMUSG00000034708.13	ENSMUST00000049460.12	2331	13	4396	-2	780	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATCTGATTTGTTGCGC	NA	NA	NA	NA	NA	NA	NA	NA	102325543	102327635	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
ONT_simulated_read_9789255	chr6	-	182	1	NIC	ENSMUSG00000004347.18	novel	3907	19	NA	NA	289949	0	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTTAGCACCTACCAGAT	NA	NA	NA	NA	NA	NA	NA	NA	56049347	56049165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_56049200_56049300
ONT_simulated_read_9791889	chr11	+	982	7	ISM	ENSMUSG00000058756.14	ENSMUST00000103139.11	2246	9	11713	1324	11713	-1324	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCTTGCTGTGGCTGAGA	NA	NA	NA	NA	NA	NA	NA	NA	98644411	98654613	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_98644465_98646933_98647002_98647748_98647850_98651701_98651850_98652546_98652753_98653746_98653894_98654354
ONT_simulated_read_9793721	chrX	-	153	1	ISM	ENSMUSG00000016427.8	ENSMUST00000016571.8	419	3	3423	0	3423	0	mono-exon	FALSE	NA	NA	NA	NA	NA	681	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTTTTATTTTTATGAA	NA	NA	NA	NA	NA	NA	NA	NA	36451393	36451240	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_-_36451200_36451400
ONT_simulated_read_9796460	chr19	-	554	1	ISM	ENSMUSG00000063904.5	ENSMUST00000025851.4	2683	18	20505	0	20465	0	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCAGTGTATGTTTCTTT	NA	NA	NA	NA	NA	NA	NA	NA	4957810	4957256	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_4957300_4957800
ONT_simulated_read_9804083	chr4	-	838	1	ISM	ENSMUSG00000028909.18	ENST00000428026.6	5274	29	54425	248	51975	-116	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGAAGAAGGGATACTTTG	NA	NA	NA	NA	NA	NA	NA	NA	131496852	131496014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_131496000_131496900
ONT_simulated_read_9804406	chr1	-	800	1	ISM	ENSMUSG00000039246.9	ENSMUST00000045388.8	1578	5	28542	238	28542	-238	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTTGCCCTGCCCAATC	NA	NA	NA	NA	NA	NA	NA	NA	185820965	185820165	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_185820200_185821000
ONT_simulated_read_9804938	chr10	-	1310	8	ISM	ENSMUSG00000061032.10	ENSMUST00000062678.11	1984	13	7392	117	5839	-117	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	383	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATCCCTGTCTCAGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	78241485	78236336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_78236819_78237683_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399
ONT_simulated_read_9805869	chr2	-	1172	10	ISM	ENSMUSG00000026915.17	ENSMUST00000028279.10	16348	17	6272	30975	6272	-17371	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAAAATCAGATAATGAA	NA	NA	NA	NA	NA	NA	NA	NA	37531025	37490854	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_37490916_37492946_37493147_37493933_37494027_37514184_37514297_37514504_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435_37525581_37530862
ONT_simulated_read_9806040	chr7	+	1355	1	FSM	ENSMUSG00000034957.11	ENSMUST00000042985.11	2626	1	0	1271	0	-1271	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCTGAGCCGGACTCGG	NA	NA	NA	NA	NA	NA	NA	NA	34818727	34820082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr7_+_34818700_34820100
ONT_simulated_read_9808000	chr2	-	932	7	ISM	ENSMUSG00000026860.17	ENSMUST00000028214.15	1810	11	8973	262	8897	-260	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGATGCTCTTGGCATG	NA	NA	NA	NA	NA	NA	NA	NA	30240355	30235082	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299
ONT_simulated_read_9808980	chr9	-	254	1	ISM	ENSMUSG00000032405.11	ENSMUST00000098651.6	5564	14	99622	2636	99364	734	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTAGCCCCGTGGGGTGTG	NA	NA	NA	NA	NA	NA	NA	NA	62788539	62788285	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_62788300_62788500
ONT_simulated_read_9810850	chr8	+	533	5	ISM	ENSMUSG00000031782.16	ENST00000567933.5	850	6	15	757	15	-757	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGCAAGGACTGATGGG	NA	NA	NA	NA	NA	NA	NA	NA	95565056	95580253	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_95565126_95569245_95569397_95571404_95571541_95579742_95579899_95580232
ONT_simulated_read_9814526	chr11	+	194	1	Antisense	novelGene_ENSMUSG00000065455.3_AS_novelGene_ENSMUSG00000018171.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGGAAAGAAAGCTGTTTA	NA	NA	NA	NA	NA	NA	NA	NA	86474892	86475086	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	Antisense_chr11_+_86474900_86475100
ONT_simulated_read_9815441	chr1	-	459	4	ISM	ENSMUSG00000026637.15	ENSMUST00000195815.3	2214	11	35238	2611	35238	-2611	internal_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAGTGACCAGAGATTAG	NA	NA	NA	NA	NA	NA	NA	NA	191741630	191731778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_191731928_191733717_191733859_191738764_191738858_191741554
ONT_simulated_read_9817152	chr6	-	256	1	NIC	ENSMUSG00000004631.16	novel	1776	12	NA	NA	57328	-14934	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCATTTAGCTGTTACTGG	NA	NA	NA	NA	NA	NA	NA	NA	4689767	4689511	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr6_-_4689500_4689800
ONT_simulated_read_9817609	chr2	+	518	5	ISM	ENSMUSG00000027255.15	ENST00000426335.6	2887	15	238	8674	0	-8674	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTTCTGCCCAGATCTC	NA	NA	NA	NA	NA	NA	NA	NA	91095637	91098583	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097602_91098501
ONT_simulated_read_981764	chr11	-	879	6	ISM	ENSMUSG00000020471.12	ENSMUST00000102922.10	1646	11	4098	0	4098	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	168	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTTCACTTGGGCATGT	NA	NA	NA	NA	NA	NA	NA	NA	5824194	5822179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023
ONT_simulated_read_9818426	chr1	-	1271	1	ISM	ENSMUSG00000041879.14	ENSMUST00000041023.14	6247	24	45039	1878	45039	-1878	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAGAGCAGAGTAGTTGC	NA	NA	NA	NA	NA	NA	NA	NA	135313198	135311927	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_135311900_135313200
ONT_simulated_read_9820050	chr6	-	2248	17	ISM	ENSMUSG00000015766.15	ENST00000647224.1	3466	20	10215	1211	10215	-803	internal_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGATGGACATGCTTTG	NA	NA	NA	NA	NA	NA	NA	NA	137504477	137455977	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_137456128_137459149_137459280_137460539_137460721_137467214_137467438_137476579_137476724_137477532_137477642_137482385_137482520_137486079_137486261_137489146_137489296_137491275_137491351_137491700_137491790_137494068_137494196_137496440_137496515_137499150_137499288_137499827_137499911_137504085_137504236_137504365
ONT_simulated_read_9823673	chr4	+	754	5	ISM	ENSMUSG00000028560.12	ENSMUST00000030289.9	3577	9	154	5822	85	-5822	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATGAGCTTATATGTAGT	NA	NA	NA	NA	NA	NA	NA	NA	98812200	98817958	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_98812481_98814691_98814912_98816470_98816592_98817100_98817206_98817930
ONT_simulated_read_9825872	chr18	-	210	1	ISM	ENSMUSG00000024350.7	ENSMUST00000025208.7	5146	8	27918	3891	27918	-3891	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGATTGGAGACTTGT	NA	NA	NA	NA	NA	NA	NA	NA	35808256	35808046	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_35808000_35808300
ONT_simulated_read_9832061	chrX	+	613	3	ISM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	1628	0	1628	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1394	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	36060931	36062460	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_36060983_36061388_36061530_36062039
ONT_simulated_read_983423	chr17	+	1639	11	ISM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	11467	0	11467	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	755	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTTAGTAATCGGAATGG	NA	NA	NA	NA	NA	NA	NA	NA	21177039	21186178	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
ONT_simulated_read_9838571	chr18	-	1595	15	ISM	ENSMUSG00000024370.18	ENSMUST00000133181.2	4133	16	272	2350	272	-2350	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTTCTCCACTCAACCT	NA	NA	NA	NA	NA	NA	NA	NA	34784516	34767085	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr18_-_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442
ONT_simulated_read_9840647	chr6	-	480	5	ISM	ENSMUSG00000030304.12	ENSMUST00000136008.8	4174	14	22790	2624	22790	-2624	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCTTTTAGAGAACAACACA	NA	NA	NA	NA	NA	NA	NA	NA	148091082	148083200	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983
ONT_simulated_read_9841740	chr8	-	1192	6	ISM	ENSMUSG00000013160.8	ENSMUST00000013304.8	1629	8	35054	0	35054	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCTGTCTGTCTGCTCC	NA	NA	NA	NA	NA	NA	NA	NA	106257625	106251096	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_106251697_106251788_106251867_106251954_106252132_106252255_106252334_106255805_106255886_106257446
ONT_simulated_read_9842528	chr3	+	792	8	NNC	ENSMUSG00000078578.10	novel	842	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	141	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATCTGAGAAGACTTAAG	NA	NA	NA	NA	NA	NA	NA	NA	135144240	135171152	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr3_+_135144324_135145421_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ONT_simulated_read_9843474	chr7	-	1115	6	ISM	ENSMUSG00000030718.10	ENSMUST00000032963.10	2772	14	33814	463	33814	-463	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTGCCACAGAGCAACCC	NA	NA	NA	NA	NA	NA	NA	NA	99987700	99976406	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_99977090_99978241_99978310_99981064_99981130_99983134_99983180_99984254_99984385_99987576
ONT_simulated_read_9845132	chr1	-	1604	1	FSM	ENSMUSG00000103839.2	ENSMUST00000194925.2	2623	1	0	1019	0	-1019	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCCACCACTGCCCGGC	NA	NA	NA	NA	NA	NA	NA	NA	58425293	58423689	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr1_-_58423700_58425300
ONT_simulated_read_9849686	chr9	-	484	3	ISM	ENSMUSG00000097177.9	ENSMUST00000181448.3	602	5	571	0	502	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGGTTATGAGCCATT	NA	NA	NA	NA	NA	NA	NA	NA	88740352	88739284	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_88739637_88739866_88739925_88740278
ONT_simulated_read_9850060	chr2	-	530	1	NIC	ENSMUSG00000002107.19	novel	7718	16	NA	NA	174419	-331	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGCCCGCCCGCCCGC	NA	NA	NA	NA	NA	NA	NA	NA	6552005	6551475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr2_-_6551500_6552000
ONT_simulated_read_985008	chr1	-	1326	1	ISM	ENSMUSG00000026628.14	ENSMUST00000027941.14	1984	4	11661	58	11661	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCCCAGTATTCCTAGC	NA	NA	NA	NA	NA	NA	NA	NA	190903876	190902550	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_190902600_190903900
ONT_simulated_read_9853352	chr12	-	1240	1	ISM	ENSMUSG00000021027.18	ENSMUST00000226244.2	8841	40	97837	118795	97837	-109043	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTAGCAGAGCAGTGAGG	NA	NA	NA	NA	NA	NA	NA	NA	55769715	55768475	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_55768500_55769700
ONT_simulated_read_985386	chr16	-	2577	1	ISM	ENSMUSG00000047714.15	ENSMUST00000060188.14	4078	6	20561	603	20276	-603	mono-exon	FALSE	NA	NA	NA	NA	NA	645	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGTGCTAAACCTGTAAAAT	NA	NA	NA	NA	NA	NA	NA	NA	31073534	31070957	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_31071000_31073500
ONT_simulated_read_9855073	chr7	-	603	5	ISM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	71	11397	71	-11397	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGACCGGGATGGCAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	126613722	126597428	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_126597530_126597644_126597769_126600651_126600848_126600980_126601131_126613690
ONT_simulated_read_9856902	chr9	+	485	4	ISM	ENSMUSG00000032463.11	ENSMUST00000035038.8	1019	5	34	3038	33	-2766	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGGTGCAATGGTCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	98868459	98881036	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_98868566_98874153_98874287_98874565_98874795_98881019
ONT_simulated_read_9857727	chr7	-	1883	2	ISM	ENSMUSG00000035713.16	ENSMUST00000168435.7	3982	10	13363	483	13363	-483	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATGCCCACCCTCTTGTT	NA	NA	NA	NA	NA	NA	NA	NA	96961808	96959069	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_96959704_96960559
ONT_simulated_read_9862293	chr6	-	646	1	ISM	ENSMUSG00000038074.17	ENSMUST00000046520.13	2694	4	13508	1420	13508	-462	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTGGAGATACACAATGT	NA	NA	NA	NA	NA	NA	NA	NA	54556654	54556008	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_54556000_54556700
ONT_simulated_read_9862324	chr15	-	1469	1	ISM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	9913	547	9913	-547	mono-exon	FALSE	NA	NA	NA	NA	NA	1088	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAATAGATTTGATTATT	NA	NA	NA	NA	NA	NA	NA	NA	94477847	94476378	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_-_94476400_94477800
ONT_simulated_read_9865398	chr2	-	349	2	ISM	ENSMUSG00000039648.15	ENSMUST00000113659.8	1367	11	8399	0	8399	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAGTAAAGGATGGAGGAT	NA	NA	NA	NA	NA	NA	NA	NA	30075725	30075279	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_30075582_30075678
ONT_simulated_read_9865689	chr10	+	3194	12	ISM	ENSMUSG00000034707.8	ENSMUST00000040344.7	3855	14	9253	347	9253	-347	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGTTTTTATGTAAAAATAG	NA	NA	NA	NA	NA	NA	NA	NA	121210247	121232803	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_121210470_121212112_121212179_121212540_121212640_121213926_121214095_121216022_121216106_121217077_121217197_121219244_121219349_121224005_121224108_121226528_121226637_121227275_121227387_121228585_121228747_121230952
ONT_simulated_read_9868518	chr13	-	364	1	ISM	ENSMUSG00000036376.4	ENSMUST00000041782.4	4456	3	1554	3588	1554	-3588	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATACCTACCAGCCCT	NA	NA	NA	NA	NA	NA	NA	NA	23606482	23606118	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_23606100_23606500
ONT_simulated_read_986918	chr1	-	439	5	ISM	ENSMUSG00000013593.13	ENSMUST00000013737.13	1623	13	9877	140	9877	-119	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	342	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGGGAGACAAGGCTGT	NA	NA	NA	NA	NA	NA	NA	NA	171064814	171062561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708
ONT_simulated_read_9871049	chr2	+	625	6	ISM	ENSMUSG00000026904.18	ENST00000421911.1	3374	24	60	90451	60	-90451	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCGCCACAGGGTCCACGAA	NA	NA	NA	NA	NA	NA	NA	NA	61876988	62064772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_61877037_61988549_61988632_62021083_62021231_62041698_62041838_62058910_62059072_62064724
ONT_simulated_read_9872066	chr17	+	535	3	ISM	ENSMUSG00000024338.16	ENST00000395339.7	948	6	1819	-2	1819	2	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTGGGTTGTGGCTGA	NA	NA	NA	NA	NA	NA	NA	NA	34419187	34420424	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_+_34419245_34419684_34419890_34420151
ONT_simulated_read_9872878	chr10	-	1386	1	ISM	ENSMUSG00000032714.7	ENSMUST00000040580.7	3288	8	6076	0	6076	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGACTGAGTCCTTGG	NA	NA	NA	NA	NA	NA	NA	NA	78421722	78420336	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_78420300_78421700
ONT_simulated_read_9873319	chr11	-	788	7	ISM	ENSMUSG00000018861.9	ENST00000583917.5	1332	10	4266	384	4266	-384	internal_fragment	FALSE	canonical	NA	NA	NA	NA	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGACAGCTTCCTCACCA	NA	NA	NA	NA	NA	NA	NA	NA	115162736	115159516	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_115159575_115160270_115160443_115160522_115160723_115161148_115161257_115162087_115162190_115162482_115162597_115162702
ONT_simulated_read_9875720	chr9	-	1496	10	ISM	ENSMUSG00000032498.10	ENST00000435176.5	2165	18	18995	0	18995	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATCATAGCCACCGTAGAG	NA	NA	NA	NA	NA	NA	NA	NA	111078381	111057523	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287
ONT_simulated_read_9877069	chr6	+	2301	1	ISM	ENSMUSG00000000439.10	ENSMUST00000000449.9	6230	8	18422	0	18422	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATACCTACACAAAGATCCA	NA	NA	NA	NA	NA	NA	NA	NA	115597284	115599585	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_115597300_115599600
ONT_simulated_read_9877204	chr10	-	794	4	ISM	ENSMUSG00000046567.11	ENST00000356891.4	1041	8	10688	574	5577	-574	internal_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATCATCGTTAGGATTTG	NA	NA	NA	NA	NA	NA	NA	NA	100414291	100409311	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_100409623_100411578_100411749_100413022_100413221_100414176
ONT_simulated_read_9877480	chr13	-	2076	10	ISM	ENSMUSG00000034928.17	ENSMUST00000125871.8	4292	11	3605	1616	3297	548	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGTCAGACCCATGCTC	NA	NA	NA	NA	NA	NA	NA	NA	54832302	54828829	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831033_54831407_54831576_54831773_54831964_54832150
ONT_simulated_read_98775	chr4	-	405	1	FSM	ENSMUSG00000050796.5	ENSMUST00000052185.5	3184	1	0	2779	0	-2779	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACGAGAACCTCACGGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	156077106	156076701	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr4_-_156076700_156077100
ONT_simulated_read_9879194	chr2	-	877	9	ISM	ENSMUSG00000017670.17	ENSMUST00000071699.11	3247	20	1226	7162	639	-7162	internal_fragment	TRUE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCCCGGGAGTGGGACTG	NA	NA	NA	NA	NA	NA	NA	NA	165157597	165140198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_165140264_165140539_165140663_165143860_165143912_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523
ONT_simulated_read_9883971	chr1	-	445	1	NIC	ENSMUSG00000037375.17	novel	699	6	NA	NA	179978	-702	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTCCCCCCCAGAAGCTTC	NA	NA	NA	NA	NA	NA	NA	NA	192196282	192195837	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr1_-_192195800_192196300
ONT_simulated_read_9887777	chr11	-	744	4	ISM	ENSMUSG00000097487.8	ENSMUST00000093933.11	748	6	-438	2937	226	-1943	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTAGGCTCACAAAGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	101315933	101314633	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_101314705_101314802_101314870_101314980_101315095_101315441
ONT_simulated_read_9888319	chr4	-	802	1	ISM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	53714	136	13083	-124	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGTTTGGAATAGCGGG	NA	NA	NA	NA	NA	NA	NA	NA	137469981	137469179	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_137469200_137470000
ONT_simulated_read_9888658	chr15	-	4744	1	NIC	ENSMUSG00000033565.19	novel	6907	14	NA	NA	69349	-473	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACAGGCACCACTGGGAC	NA	NA	NA	NA	NA	NA	NA	NA	76968407	76963663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr15_-_76963700_76968400
ONT_simulated_read_9891959	chr10	-	350	3	ISM	ENSMUSG00000019863.8	ENST00000400977.3	1474	10	11050	7658	11050	-7658	internal_fragment	FALSE	canonical	NA	NA	NA	NA	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGAGTCTGAAGGAGCC	NA	NA	NA	NA	NA	NA	NA	NA	43761114	43758193	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_-_43758255_43760744_43760858_43760938
ONT_simulated_read_9892943	chr16	+	744	4	ISM	ENSMUSG00000022705.6	ENSMUST00000023390.5	1455	7	0	5770	0	-5682	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	183	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGCACCCGGCAGGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	43582583	43637525	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_43582875_43610960_43611074_43627740_43627884_43637328
ONT_simulated_read_9893102	chr16	-	822	3	ISM	ENSMUSG00000022978.12	ENSMUST00000099554.5	1333	5	5645	66	5645	-66	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTATAAGGAATGTATTC	NA	NA	NA	NA	NA	NA	NA	NA	90518647	90516265	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_90516867_90517541_90517639_90518523
ONT_simulated_read_9898632	chr2	+	545	3	ISM	ENSMUSG00000039844.21	ENSMUST00000091146.12	6212	26	82741	30066	58667	-28030	internal_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGCCCTCGGTGAGTCTC	NA	NA	NA	NA	NA	NA	NA	NA	29592493	29600309	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_29592691_29597209_29597413_29600164
ONT_simulated_read_9901120	chr7	-	243	2	ISM	ENSMUSG00000048170.15	ENSMUST00000057557.14	4237	16	41099	1965	41090	-639	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCGTGCAGTCCACAGTCC	NA	NA	NA	NA	NA	NA	NA	NA	128301120	128300129	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_128300295_128301042
ONT_simulated_read_9903356	chr4	+	232	4	ISM	ENSMUSG00000028797.21	ENSMUST00000102591.10	1437	5	408	1048	397	-102	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCACAGGGATCACCGTGT	NA	NA	NA	NA	NA	NA	NA	NA	129494880	129501273	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_129494928_129495987_129496055_129500879_129500973_129501248
ONT_simulated_read_9903783	chr13	-	1558	4	ISM	ENSMUSG00000021301.10	ENST00000453890.5	4850	27	188639	-902	188639	-459	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTCTTTTTTTTTTCCTT	NA	NA	NA	NA	NA	NA	NA	NA	14420439	14404227	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_14405346_14408883_14409083_14411475_14411591_14420313
ONT_simulated_read_9908560	chr13	-	2403	1	ISM	ENSMUSG00000069206.15	ENSMUST00000075255.6	3238	4	8305	484	8264	-484	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAATAGCACTTCCTGTAC	NA	NA	NA	NA	NA	NA	NA	NA	67591438	67589035	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_67589000_67591400
ONT_simulated_read_990877	chr13	+	149	2	ISM	ENSMUSG00000021697.13	ENSMUST00000171178.2	1404	10	41004	26423	41004	-26423	internal_fragment	FALSE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCGGCATGCCGCCTCGT	NA	NA	NA	NA	NA	NA	NA	NA	108493959	108498813	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_+_108494064_108498768
ONT_simulated_read_9909450	chr2	-	251	2	ISM	ENSMUSG00000034032.16	ENST00000304330.9	4237	25	9194	12506	9191	-12506	internal_fragment	FALSE	canonical	NA	NA	NA	NA	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAACAAAGGCCACCAAGAAG	NA	NA	NA	NA	NA	NA	NA	NA	119608794	119607320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_119607375_119608597
ONT_simulated_read_9910461	chr2	-	984	1	ISM	ENSMUSG00000026819.16	ENSMUST00000052119.14	3529	11	14827	822	5308	-249	mono-exon	FALSE	NA	NA	NA	NA	NA	291	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATTATGTCTTAGTGGG	NA	NA	NA	NA	NA	NA	NA	NA	32306304	32305320	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_32305300_32306300
ONT_simulated_read_9912056	chr17	-	1792	6	ISM	ENSMUSG00000002017.11	ENSMUST00000112507.4	2817	8	7071	663	6987	-654	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCTCCGAGCATAGCTCT	NA	NA	NA	NA	NA	NA	NA	NA	75851870	75844743	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr17_-_75845857_75845941_75846110_75846395_75846513_75847105_75847187_75848190_75848376_75851742
ONT_simulated_read_9912083	chr8	-	576	4	ISM	ENSMUSG00000038506.14	ENSMUST00000110839.10	2937	6	9443	1819	9150	-1818	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTACTCTGCTTAAAGGC	NA	NA	NA	NA	NA	NA	NA	NA	13328683	13307781	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_13307977_13311384_13311468_13321589_13321721_13328516
ONT_simulated_read_9912282	chr4	-	763	10	ISM	ENSMUSG00000028207.19	ENSMUST00000108334.8	2685	14	35857	1413	35710	-1413	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTATTTTTCAGAGAAGA	NA	NA	NA	NA	NA	NA	NA	NA	9607860	9576679	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796
ONT_simulated_read_9913082	chr7	-	728	7	ISM	ENSMUSG00000030751.19	ENSMUST00000135570.8	960	10	2130	0	2130	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTCCAGATGTAAGTTTT	NA	NA	NA	NA	NA	NA	NA	NA	113873131	113864029	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046
ONT_simulated_read_9914441	chr14	-	1340	7	ISM	ENSMUSG00000021910.16	ENSMUST00000172142.8	2780	14	18031	509	2735	-509	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGAGGAAGAAAGTTTG	NA	NA	NA	NA	NA	NA	NA	NA	30910752	30905778	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_30906355_30906898_30907008_30907268_30907383_30908715_30908845_30909015_30909202_30909606_30909676_30910595
ONT_simulated_read_9915488	chr8	-	2353	1	ISM	ENSMUSG00000093904.3	ENSMUST00000179857.3	4902	5	10808	2013	10808	-2013	mono-exon	FALSE	NA	NA	NA	NA	NA	1138	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGCTGTTGATTTTGGT	NA	NA	NA	NA	NA	NA	NA	NA	127661782	127659429	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_127659400_127661800
ONT_simulated_read_9917231	chr8	-	1194	4	ISM	ENSMUSG00000015341.18	ENSMUST00000121783.7	1945	5	6619	404	6619	-404	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAAATCTTTTGATTGAC	NA	NA	NA	NA	NA	NA	NA	NA	23740418	23731772	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264
ONT_simulated_read_9918491	chr3	+	727	2	ISM	ENSMUSG00000038712.17	ENSMUST00000039537.14	2800	10	271	8206	146	-8197	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTGAGAACCCAGCCCCT	NA	NA	NA	NA	NA	NA	NA	NA	95190525	95195271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_95190937_95194955
ONT_simulated_read_9927574	chr19	-	537	1	ISM	ENSMUSG00000024668.9	ENSMUST00000025570.8	2981	4	21991	2054	14259	-145	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGCTGAATGAGGCACCA	NA	NA	NA	NA	NA	NA	NA	NA	10480488	10479951	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_10480000_10480500
ONT_simulated_read_9930860	chr14	-	3068	1	FSM	ENSMUSG00000103065.2	ENSMUST00000193037.2	4540	1	0	1472	0	-1472	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTGCTGAGTCATCTTGC	NA	NA	NA	NA	NA	NA	NA	NA	69519589	69516521	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr14_-_69516500_69519600
ONT_simulated_read_9931541	chr6	-	603	4	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	2752	7764	2752	-5767	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGATCCAGGAGATGAAGGA	NA	NA	NA	NA	NA	NA	NA	NA	122716952	122712531	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_122712570_122713537_122713701_122714016_122714258_122716791
ONT_simulated_read_9931754	chr13	+	1144	8	NNC	ENSMUSG00000025875.15	novel	1585	8	NA	NA	-81	203	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGGTGTGTACCTGTGTGT	NA	NA	NA	NA	NA	NA	NA	NA	54937275	54944238	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943227_54943272_54943778_54943896_54943969
ONT_simulated_read_9932337	chr6	-	477	2	ISM	ENSMUSG00000037621.9	ENSMUST00000042646.8	2355	3	11665	673	11665	-673	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCACAAAACCACATCATTG	NA	NA	NA	NA	NA	NA	NA	NA	72200896	72183833	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_72184140_72200725
ONT_simulated_read_993358	chr14	+	1160	8	ISM	ENSMUSG00000021771.15	ENSMUST00000022293.14	1954	10	2	5310	2	-4668	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTACCTCTTGGGCTTA	NA	NA	NA	NA	NA	NA	NA	NA	21881338	21890637	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486
ONT_simulated_read_9933604	chr9	-	1741	11	ISM	ENSMUSG00000032396.18	ENSMUST00000113890.2	3224	17	824	4757	824	-4757	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCAATTGGAAAGTTGACA	NA	NA	NA	NA	NA	NA	NA	NA	64246915	64219049	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_64219262_64221215_64221309_64221834_64222083_64224969_64225132_64226364_64226535_64229683_64229864_64231903_64231983_64232989_64233167_64236714_64236851_64238068_64238198_64246760
ONT_simulated_read_9934955	chr3	-	2231	9	ISM	ENSMUSG00000028134.12	ENSMUST00000200097.5	3777	14	35872	497	24	-245	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGGCTCAGAATCTACAG	NA	NA	NA	NA	NA	NA	NA	NA	119541581	119512887	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_119514107_119514255_119514334_119514437_119514655_119517742_119517836_119518260_119518295_119519714_119519855_119533963_119534160_119541240_119541352_119541438
ONT_simulated_read_9936785	chr8	+	1309	6	ISM	ENSMUSG00000031570.18	ENSMUST00000139836.8	1539	8	524	0	524	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	NA	NA	NA	NA	NA	NA	NA	26210614	26214914	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26213057_26213141_26214106
ONT_simulated_read_9937028	chr14	-	1081	1	ISM	ENSMUSG00000022120.5	ENSMUST00000022716.4	3420	6	42353	1663	42353	-1663	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAGAAGGAAGTAAACTGAA	NA	NA	NA	NA	NA	NA	NA	NA	104717715	104716634	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_104716600_104717700
ONT_simulated_read_9937430	chr16	+	489	5	ISM	ENSMUSG00000035376.11	ENSMUST00000061156.10	3598	7	2	9365	2	-9365	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCGTTACTCCTTTTACAC	NA	NA	NA	NA	NA	NA	NA	NA	34842799	34920182	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_34843006_34846194_34846313_34869089_34869109_34895975_34896065_34920125
ONT_simulated_read_9939246	chr8	-	1139	7	ISM	ENSMUSG00000003813.16	ENSMUST00000109761.9	1842	9	2050	334	2026	-334	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	167	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTGCAGCCAGATGGAGG	NA	NA	NA	NA	NA	NA	NA	NA	85565244	85561873	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_-_85562304_85562383_85562549_85564088_85564223_85564317_85564397_85564635_85564764_85564901_85564958_85565097
ONT_simulated_read_9942023	chr12	-	775	1	ISM	ENSMUSG00000055917.16	ENSMUST00000069692.10	2438	13	129871	83	129871	-83	mono-exon	FALSE	NA	NA	NA	NA	NA	225	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAGTAACAAAGATAAGTAC	NA	NA	NA	NA	NA	NA	NA	NA	40365902	40365127	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_40365100_40365900
ONT_simulated_read_994270	chr8	-	1015	1	FSM	ENSMUSG00000045538.7	ENSMUST00000058579.7	2262	1	331	916	331	-916	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAACTGGTGGACTACAT	NA	NA	NA	NA	NA	NA	NA	NA	106738183	106737168	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr8_-_106737200_106738200
ONT_simulated_read_9943232	chr2	+	2194	6	ISM	ENSMUSG00000027397.15	ENSMUST00000110315.2	3219	10	7010	-7	7010	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTGTGCTTTTTGTTT	NA	NA	NA	NA	NA	NA	NA	NA	129048239	129053536	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_+_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
ONT_simulated_read_9944637	chr16	-	1407	6	ISM	ENSMUSG00000022757.20	ENST00000675543.1	1709	8	8256	-1	8256	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTCTTGTTGCCTAAT	NA	NA	NA	NA	NA	NA	NA	NA	56524937	56510694	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_56511517_56512238_56512280_56514762_56514853_56517821_56517960_56521431_56521600_56524789
ONT_simulated_read_9945208	chr6	+	2116	8	ISM	ENSMUSG00000046679.17	ENSMUST00000113698.8	2922	10	0	7707	0	-7707	5prime_fragment	TRUE	canonical	NA	NA	NA	NA	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGAGTTTATTCCTCAGG	NA	NA	NA	NA	NA	NA	NA	NA	86415708	86439663	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_86416241_86420708_86420958_86422415_86423251_86424322_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562
ONT_simulated_read_9947046	chr2	-	474	1	ISM	ENSMUSG00000037773.15	ENSMUST00000089581.11	3496	7	4967	1155	4967	121	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAACACATACACACTAAA	NA	NA	NA	NA	NA	NA	NA	NA	130261231	130260757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_130260800_130261200
ONT_simulated_read_994799	chr19	-	1218	1	ISM	ENSMUSG00000074852.5	ENSMUST00000099428.5	4231	12	599243	1356	224121	-141	mono-exon	FALSE	NA	NA	NA	NA	NA	306	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACCAGTTCCACCCTACC	NA	NA	NA	NA	NA	NA	NA	NA	42777551	42776333	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_-_42776300_42777600
ONT_simulated_read_9948190	chr16	+	313	1	FSM	ENSMUSG00000116562.2	ENSMUST00000231718.2	250	1	0	-63	0	63	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTACCAAGACAATGTAAT	NA	NA	NA	NA	NA	NA	NA	NA	68685233	68685546	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_68685200_68685500
ONT_simulated_read_994931	chr9	+	942	8	ISM	ENSMUSG00000001774.9	ENSMUST00000001825.9	5789	11	0	7503	0	-3724	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGTAACCTTTTCAAAGTA	NA	NA	NA	NA	NA	NA	NA	NA	18203420	18221235	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128
ONT_simulated_read_9950722	chr14	-	233	2	ISM	ENSMUSG00000022174.9	ENSMUST00000022781.8	878	3	11235	173	10973	-173	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGATTCGTGCTTGACT	NA	NA	NA	NA	NA	NA	NA	NA	54480326	54473108	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_-_54473171_54480155
ONT_simulated_read_9951001	chr3	-	270	1	FSM	ENSMUSG00000072381.4	ENSMUST00000097146.4	517	1	0	247	0	-247	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACTTATCCCTGAGAGG	NA	NA	NA	NA	NA	NA	NA	NA	101214395	101214125	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr3_-_101214100_101214400
ONT_simulated_read_9952467	chr9	+	1163	7	ISM	ENSMUSG00000057193.9	ENSMUST00000034697.8	3456	22	9156	750	8541	296	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	153	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGCAGACAGTAAGGGATC	NA	NA	NA	NA	NA	NA	NA	NA	21258279	21265571	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
ONT_simulated_read_9954784	chr9	-	2687	10	ISM	ENSMUSG00000041729.16	ENSMUST00000048043.12	3610	12	82425	304	82425	-304	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATACATAGGACACTTCT	NA	NA	NA	NA	NA	NA	NA	NA	62361901	62327077	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_62328696_62333072_62333213_62333422_62333514_62333812_62333926_62335217_62335315_62336230_62336336_62336507_62336625_62338583_62338749_62339638_62339789_62361810
ONT_simulated_read_9955550	chr16	-	1072	1	ISM	ENSMUSG00000022680.15	ENSMUST00000023361.12	4228	24	68303	605	68197	407	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGGGAATTTTCAGTTT	NA	NA	NA	NA	NA	NA	NA	NA	13652688	13651616	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_-_13651600_13652700
ONT_simulated_read_9958446	chr1	+	1005	1	ISM	ENSMUSG00000055013.17	ENST00000409538.5	5571	18	0	309991	0	-122338	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTGGCTTGGGCGCCGG	NA	NA	NA	NA	NA	NA	NA	NA	89507957	89508962	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_89508000_89509000
ONT_simulated_read_9963652	chr15	+	980	4	ISM	ENSMUSG00000042535.10	ENSMUST00000046463.10	3449	12	26161	983	26161	-983	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACCAGCCTCCAAGAGCT	NA	NA	NA	NA	NA	NA	NA	NA	79601206	79604697	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_79601320_79601795_79601975_79603228_79603430_79604210
ONT_simulated_read_99652	chr3	+	1233	7	ISM	ENSMUSG00000027940.19	ENSMUST00000118566.8	2190	9	7802	612	7741	59	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGCTACCGTTCAGCCCCA	NA	NA	NA	NA	NA	NA	NA	NA	89994762	90007591	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_89994880_89994980_89995052_89996354_89996431_89997103_89997167_89997316_89997387_89998319_89998399_90006834
ONT_simulated_read_9966331	chr18	-	759	1	NIC	ENSMUSG00000038059.8	novel	1990	2	NA	NA	26401	-637	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTGCCCTTATGCACCA	NA	NA	NA	NA	NA	NA	NA	NA	60608658	60607899	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr18_-_60607900_60608700
ONT_simulated_read_9968539	chr11	+	339	2	ISM	ENSMUSG00000018167.11	ENSMUST00000018311.5	2070	15	0	8832	0	-8832	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCGCCGCACCTTCTGCCT	NA	NA	NA	NA	NA	NA	NA	NA	98249193	98263093	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_98249335_98262895
ONT_simulated_read_9969586	chr7	+	427	1	ISM	ENSMUSG00000004500.10	ENSMUST00000038701.8	4315	4	7	7551	7	-4441	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGGCCGCTGACAAATC	NA	NA	NA	NA	NA	NA	NA	NA	12699771	12700198	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_+_12699800_12700200
ONT_simulated_read_9971312	chr5	-	3978	8	ISM	ENSMUSG00000041298.16	ENSMUST00000047257.15	6157	11	23940	1698	23940	-1698	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCCAAGTAGTGCTGGAC	NA	NA	NA	NA	NA	NA	NA	NA	148841517	148810091	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_-_148813147_148815667_148815795_148825688_148825824_148828438_148828566_148829319_148829479_148830492_148830599_148830958_148831087_148841376
ONT_simulated_read_9971687	chr11	-	471	3	ISM	ENSMUSG00000017561.17	ENSMUST00000061283.15	2396	8	24439	988	24386	-988	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGAAGGGCTTGGCTTT	NA	NA	NA	NA	NA	NA	NA	NA	79947378	79938306	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_79938564_79939417_79939531_79947277
ONT_simulated_read_9971882	chr3	+	843	9	ISM	ENSMUSG00000027710.15	ENSMUST00000011492.15	3930	18	14242	2739	10513	-820	internal_fragment	FALSE	canonical	NA	NA	NA	NA	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCCAGAATCTCTTCAG	NA	NA	NA	NA	NA	NA	NA	NA	36134369	36144263	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_+_36134446_36135959_36136031_36136257_36136378_36139562_36139692_36141868_36141949_36142636_36142764_36142963_36143042_36143480_36143610_36144230
ONT_simulated_read_9972222	chr9	-	323	1	ISM	ENSMUSG00000059495.15	ENSMUST00000165665.9	10752	41	137815	4007	137314	-552	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGCCTGTGGAGGGCCAG	NA	NA	NA	NA	NA	NA	NA	NA	42879467	42879144	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_42879100_42879500
ONT_simulated_read_9974587	chr4	-	1464	1	NIC	ENSMUSG00000041459.16	novel	6495	7	NA	NA	6591	143	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAGAGCAATGATAGCAAA	NA	NA	NA	NA	NA	NA	NA	NA	148703228	148701764	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr4_-_148701800_148703200
ONT_simulated_read_9976752	chr19	+	237	2	NNC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	35	-4533	at_least_one_novel_splicesite	FALSE	canonical	NA	NA	NA	NA	41	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGGTGGAGGCGCCTT	NA	NA	NA	NA	NA	NA	NA	NA	4198652	4199501	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NNC_chr19_+_4198729_4199340
ONT_simulated_read_9976851	chr11	-	625	1	NIC	ENSMUSG00000025576.18	novel	2636	12	NA	NA	118958	537	mono-exon	FALSE	NA	NA	NA	NA	NA	249	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTTCCGGCTACAAAGAAC	NA	NA	NA	NA	NA	NA	NA	NA	118382068	118381443	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr11_-_118381400_118382100
ONT_simulated_read_9980594	chr11	-	724	5	ISM	ENSMUSG00000044328.14	ENSMUST00000060417.11	1463	7	435	577	435	-577	internal_fragment	FALSE	canonical	NA	NA	NA	NA	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGTCAGGTTTCCCCAGCT	NA	NA	NA	NA	NA	NA	NA	NA	77403761	77399501	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_77399818_77399901_77400100_77400423_77400553_77403478_77403521_77403722
ONT_simulated_read_9981137	chr6	-	508	3	ISM	ENSMUSG00000000184.13	ENSMUST00000000188.12	6330	5	2208	13931	2155	9190	internal_fragment	FALSE	canonical	NA	NA	NA	NA	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTTTGGCTGAGTCCCC	NA	NA	NA	NA	NA	NA	NA	NA	127125815	127116055	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_127116215_127122985_127123146_127125626
ONT_simulated_read_9985040	chr6	-	1944	1	ISM	ENSMUSG00000037788.15	ENSMUST00000127485.8	2908	5	94906	480	94906	-480	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTATTTAATTATATATCA	NA	NA	NA	NA	NA	NA	NA	NA	57707215	57705271	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_57705300_57707200
ONT_simulated_read_9987710	chr17	-	576	1	NIC	ENSMUSG00000034868.10	novel	2143	4	NA	NA	4035	104	mono-exon	FALSE	NA	NA	NA	NA	NA	503	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGATAGTGTGGGGTGCT	NA	NA	NA	NA	NA	NA	NA	NA	71281492	71280916	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	NIC_chr17_-_71280900_71281500
ONT_simulated_read_9991881	chr1	-	444	3	ISM	ENSMUSG00000052748.15	ENSMUST00000064771.12	3688	20	36897	16634	36897	-16634	internal_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATATATCAGAACAGGTAT	NA	NA	NA	NA	NA	NA	NA	NA	151267309	151260083	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_151260256_151264370_151264520_151267186
ONT_simulated_read_9993217	chrX	-	282	1	FSM	ENSMUSG00000081418.2	ENSMUST00000121899.2	700	1	0	418	0	-418	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAGATTAAAGATGAAC	NA	NA	NA	NA	NA	NA	NA	NA	93819283	93819001	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chrX_-_93819000_93819300
ONT_simulated_read_9993440	chr13	-	271	4	ISM	ENSMUSG00000021557.16	ENSMUST00000109830.9	2879	18	20921	37782	8074	723	internal_fragment	FALSE	canonical	NA	NA	NA	NA	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGTTGCCAAAGGTGGTT	NA	NA	NA	NA	NA	NA	NA	NA	59684179	59678995	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_59679018_59679826_59679891_59680985_59681054_59684062
ONT_simulated_read_999508	chr2	+	579	1	FSM	ENSMUSG00000047965.10	ENSMUST00000140507.2	579	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGCCTCAGATTTTACAT	NA	NA	NA	NA	NA	NA	NA	NA	70289325	70289904	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr2_+_70289300_70289900
ONT_simulated_read_9995737	chr1	+	1120	10	ISM	ENSMUSG00000060679.15	ENSMUST00000057208.13	1418	11	11281	59	11281	-59	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAGTGCTATTTTGTTAT	NA	NA	NA	NA	NA	NA	NA	NA	42901673	42944783	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938600_42938710_42942454_42942625_42944564
ONT_simulated_read_9996358	chr1	-	263	2	ISM	ENSMUSG00000026239.15	ENSMUST00000027444.15	1159	5	36767	406	36767	-406	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGAACCCACCTGTGCA	NA	NA	NA	NA	NA	NA	NA	NA	86473502	86471121	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_86471306_86473423
ONT_simulated_read_9996592	chr6	-	744	7	ISM	ENSMUSG00000030279.16	ENST00000396028.6	3343	26	21344	29701	21325	-29574	internal_fragment	FALSE	canonical	NA	NA	NA	NA	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCATATACCATATGATG	NA	NA	NA	NA	NA	NA	NA	NA	143024168	142987236	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143019388_143019514_143023988
ONT_simulated_read_9997609	chr7	-	687	3	ISM	ENSMUSG00000062300.15	ENSMUST00000108450.5	1955	6	11160	6541	11160	-6541	internal_fragment	FALSE	canonical	NA	NA	NA	NA	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGACAACTGGTACCTTG	NA	NA	NA	NA	NA	NA	NA	NA	19472298	19464626	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_19464655_19466839_19467137_19471936
ONT_simulated_read-1_102508	chr6	-	1355	5	ISM	ENSMUSG00000029672.17	ENST00000312214.5	660	7	17032	-946	17032	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTGCCTAAACGTGTAG	NA	NA	NA	NA	NA	NA	NA	NA	22322347	22307504	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_-_22308538_22309325_22309453_22318932_22319018_22321327_22321379_22322288
ONT_simulated_read-1_10545465	chr17	+	1076	4	FSM	ENSMUSG00000024308.16	ENST00000489157.5	1063	4	-11	-2	-11	2	multi-exon	FALSE	canonical	NA	NA	NA	NA	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGCCTGGGGAACATCAGAA	NA	NA	NA	NA	NA	NA	NA	NA	34138547	34145327	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_34138699_34138844_34139025_34144383_34144783_34144981
ONT_simulated_read-1_10725751	chr17	+	864	4	FSM	ENSMUSG00000023861.18	ENST00000621630.1	833	4	-29	-2	0	0	multi-exon	FALSE	canonical	NA	NA	NA	NA	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAGTGTGACTATATAT	NA	NA	NA	NA	NA	NA	NA	NA	8502683	8516493	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_8502794_8515366_8515464_8515655_8515789_8515969
ONT_simulated_read-1_10959068	chr6	+	989	9	ISM	ENSMUSG00000068328.10	ENSMUST00000092618.9	1769	12	193	971	193	-971	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	103	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCCCCATGTGCCATTGA	NA	NA	NA	NA	NA	NA	NA	NA	83031694	83033818	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739
ONT_simulated_read-1_11701819	chr7	-	1174	8	ISM	ENSMUSG00000052997.16	ENST00000439527.6	2496	17	13345	444	13345	-444	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	300	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTGGGTGATGAGCTGAAA	NA	NA	NA	NA	NA	NA	NA	NA	33854052	33840564	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908
ONT_simulated_read-1_11965593	chr1	-	1880	5	ISM	ENSMUSG00000003721.15	ENSMUST00000003818.14	2697	6	8136	399	7790	-399	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGAGAGAAAATGTATTCA	NA	NA	NA	NA	NA	NA	NA	NA	121247617	121232480	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325
ONT_simulated_read-1_12896168	chr4	-	1217	4	ISM	ENSMUSG00000028923.15	ENSMUST00000030760.15	1906	8	5720	256	5668	-256	3prime_fragment	TRUE	canonical	NA	NA	NA	NA	530	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACCTCTAGATACATTTTT	NA	NA	NA	NA	NA	NA	NA	NA	140799948	140794078	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_-_140794924_140795505_140795591_140797366_140797545_140799839
ONT_simulated_read-1_12933942	chr5	+	835	7	ISM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	156	1089	-29	-907	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	1099	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTCCCAGGCATCCCTAG	NA	NA	NA	NA	NA	NA	NA	NA	135807489	135818156	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054
ONT_simulated_read-1_13433359	chr16	+	1222	9	ISM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	0	6784	0	-6784	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGATAAACTACTGACTG	NA	NA	NA	NA	NA	NA	NA	NA	20470401	20475380	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292
ONT_simulated_read-1_1346669	chr6	+	872	7	ISM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	246	2580	186	-2283	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTAGGCCGCCCAGGACG	NA	NA	NA	NA	NA	NA	NA	NA	67244240	67258715	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631
ONT_simulated_read-1_13710544	chr9	-	1549	3	ISM	ENSMUSG00000032199.14	ENSMUST00000163972.2	2138	4	1153	365	1153	-365	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1681	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAGCGCTGAAGAGGTGC	NA	NA	NA	NA	NA	NA	NA	NA	71391087	71386117	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_-_71386823_71388623_71388829_71390448
ONT_simulated_read-1_15143586	chr7	-	829	4	ISM	ENSMUSG00000006095.13	ENSMUST00000006254.6	1416	6	208	2802	208	-2701	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCAAGCCAGTGCCATCT	NA	NA	NA	NA	NA	NA	NA	NA	29931489	29926357	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_29926461_29927028_29927126_29930550_29930695_29931004
ONT_simulated_read-1_1614746	chr1	+	498	3	ISM	ENSMUSG00000026229.18	ENST00000373635.9	3131	24	68975	31	68975	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	193	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAATCTCCACATTGACC	NA	NA	NA	NA	NA	NA	NA	NA	86061358	86066997	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr1_+_86061507_86064684_86064839_86066801
ONT_simulated_read-1_16326523	chr14	+	4161	16	ISM	ENSMUSG00000021767.20	ENST00000372714.6	5910	17	15900	1396	0	-1255	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCACTCACAGCAGGTCG	NA	NA	NA	NA	NA	NA	NA	NA	21566818	21719686	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
ONT_simulated_read-1_16385103	chr2	-	373	3	ISM	ENSMUSG00000009549.15	ENSMUST00000009693.15	798	5	678	231	602	-231	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	301	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACGCCAGTTTTTGATT	NA	NA	NA	NA	NA	NA	NA	NA	118309514	118306561	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr2_-_118306789_118307307_118307341_118309401
ONT_simulated_read-1_16450457	chrX	+	1210	7	ISM	ENSMUSG00000025592.18	ENST00000510272.5	1718	10	168103	-2	168103	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	479	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCATTTCTCTGAGTTTTT	NA	NA	NA	NA	NA	NA	NA	NA	112634045	112745590	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chrX_+_112634115_112659967_112660104_112724539_112724689_112724813_112724962_112727319_112727467_112729645_112729712_112745095
ONT_simulated_read-1_17470714	chr12	-	840	3	ISM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	7767	2093	7767	-2093	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	675	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTAGCCTCTGCCCCATC	NA	NA	NA	NA	NA	NA	NA	NA	84812159	84803428	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_-_84803987_84807493_84807667_84812050
ONT_simulated_read-1_19479231	chr9	+	1183	8	FSM	ENSMUSG00000034563.17	ENST00000310958.10	2537	8	45	1309	0	-1309	multi-exon	FALSE	canonical	NA	NA	NA	NA	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGGAGAAGGAAGAACAAG	NA	NA	NA	NA	NA	NA	NA	NA	72892710	72919321	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr9_+_72892956_72904683_72904753_72906305_72906421_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211
ONT_simulated_read-1_19648053	chr14	+	852	6	ISM	ENSMUSG00000023411.13	ENST00000554661.5	2585	9	3613	1141	-948	-1141	internal_fragment	FALSE	canonical	NA	NA	NA	NA	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGCCCGCCTACCTTCA	NA	NA	NA	NA	NA	NA	NA	NA	56066927	56069940	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr14_+_56067022_56067350_56067524_56067912_56068054_56069109_56069166_56069404_56069532_56069679
ONT_simulated_read-1_19873488	chr12	+	2269	17	FSM	ENSMUSG00000007411.17	ENST00000677360.1	3165	17	6	890	5	-316	multi-exon	FALSE	canonical	NA	NA	NA	NA	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAGAGAGGCCAAGCCCC	NA	NA	NA	NA	NA	NA	NA	NA	111540969	111621733	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr12_+_111541536_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
ONT_simulated_read-1_2086901	chr5	+	2022	7	ISM	ENSMUSG00000029622.17	ENSMUST00000085679.13	3105	10	9464	658	9367	-658	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTAGCTGCAGGATCCTCT	NA	NA	NA	NA	NA	NA	NA	NA	145060488	145065851	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr5_+_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
ONT_simulated_read-1_2172106	chr19	+	1197	9	ISM	ENSMUSG00000025157.9	ENSMUST00000026154.9	1821	11	4113	302	2	-95	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTACACAGGGACAATCAAG	NA	NA	NA	NA	NA	NA	NA	NA	41926041	41932241	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr19_+_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ONT_simulated_read-1_237621	chr11	+	1432	8	ISM	ENSMUSG00000001100.11	ENSMUST00000001127.11	2054	11	4626	162	4522	-162	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTCAGTGACCAAGTC	NA	NA	NA	NA	NA	NA	NA	NA	78407644	78413400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
ONT_simulated_read-1_2815013	chr15	+	1376	8	ISM	ENSMUSG00000068206.14	ENSMUST00000166155.2	1699	12	13266	-137	13266	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGGCTCCTTGCAATG	NA	NA	NA	NA	NA	NA	NA	NA	79127167	79133666	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
ONT_simulated_read-1_282824	chr15	+	913	9	FSM	ENSMUSG00000033287.17	ENST00000403888.7	1329	9	139	277	134	58	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACTCACTCCTGCCTTG	NA	NA	NA	NA	NA	NA	NA	NA	78312995	78322847	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321100_78321195_78321357_78321433_78321783_78321872_78322686
ONT_simulated_read-1_3067299	chr13	-	2140	6	ISM	ENSMUSG00000038267.16	ENST00000380302.8	2674	9	101219	104	101219	-104	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	597	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGGCAGGAGTGCAGG	NA	NA	NA	NA	NA	NA	NA	NA	34388027	34365775	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr13_-_34367295_34376138_34376263_34377376_34377410_34379234_34379468_34381784_34381888_34387899
ONT_simulated_read-1_317883	chr3	-	2056	13	ISM	ENSMUSG00000027674.17	ENST00000476138.5	2314	15	58201	0	72	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	263	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCGCTTCCAAATTGCAA	NA	NA	NA	NA	NA	NA	NA	NA	33078951	33004551	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr3_-_33005023_33006619_33006778_33007184_33007351_33008476_33008675_33009910_33009982_33010821_33010966_33012894_33013012_33047054_33047151_33058452_33058550_33060068_33060193_33061270_33061466_33069113_33069226_33078844
ONT_simulated_read-1_3329777	chr7	-	279	3	ISM	ENSMUSG00000032776.10	ENST00000543482.5	1355	10	78473	2336	31507	-2336	internal_fragment	FALSE	canonical	NA	NA	NA	NA	167	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTCTGTTAATTCCACA	NA	NA	NA	NA	NA	NA	NA	NA	71877804	71863690	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr7_-_71863857_71873768_71873805_71877727
ONT_simulated_read-1_431863	chr11	-	890	6	ISM	ENSMUSG00000025140.16	ENST00000619204.4	1055	8	803	0	264	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	373	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGCCAGCCTTCCTC	NA	NA	NA	NA	NA	NA	NA	NA	120533788	120531014	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717
ONT_simulated_read-1_447777	chr12	+	1123	9	ISM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	315	869	315	-869	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAACCAGCAAAAACA	NA	NA	NA	NA	NA	NA	NA	NA	24758554	24763276	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
ONT_simulated_read-1_4506087	chr10	+	427	2	ISM	ENSMUSG00000019848.15	ENSMUST00000161803.2	1369	4	-97	3401	0	-3401	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGGGAAAGCGAAGGACT	NA	NA	NA	NA	NA	NA	NA	NA	45165400	45190812	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr10_+_45165672_45190656
ONT_simulated_read-1_4794722	chr6	+	1148	5	ISM	ENSMUSG00000029860.17	ENSMUST00000203652.3	2605	10	41	6707	0	-6537	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	639	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCACAGGCTCCCCTCA	NA	NA	NA	NA	NA	NA	NA	NA	42326802	42328789	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr6_+_42327054_42327190_42327411_42327879_42328083_42328203_42328297_42328408
ONT_simulated_read-1_5424174	chr8	+	1978	4	ISM	ENSMUSG00000005698.16	ENST00000644753.1	3614	11	32476	-4	32476	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAAGACTCCGTCTTTT	NA	NA	NA	NA	NA	NA	NA	NA	106402642	106409554	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr8_+_106402811_106403846_106403983_106406705_106406892_106408066
ONT_simulated_read-1_5696402	chr11	+	942	7	ISM	ENSMUSG00000007653.13	ENST00000517901.5	1700	8	111	29405	14	-29189	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	132	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAGGACCCCAGCGCCAA	NA	NA	NA	NA	NA	NA	NA	NA	42312136	42488529	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_+_42312254_42313407_42313476_42378022_42378244_42420238_42420322_42482684_42482823_42484623_42484777_42488367
ONT_simulated_read-1_6713944	chr17	+	1132	3	FSM	ENSMUSG00000037089.12	ENST00000538577.5	1303	3	51	120	-12	-120	multi-exon	FALSE	canonical	NA	NA	NA	NA	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGGGACTGGGAGTAGCT	NA	NA	NA	NA	NA	NA	NA	NA	45874873	45878051	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr17_+_45874995_45875505_45875700_45877234
ONT_simulated_read-1_6824583	chr4	+	2328	11	ISM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	7474	0	7474	0	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAACACAGCTTTGTCA	NA	NA	NA	NA	NA	NA	NA	NA	129091026	129113400	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr4_+_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
ONT_simulated_read-1_7521941	chr11	-	624	3	ISM	ENSMUSG00000057113.14	ENSMUST00000093201.13	1192	10	6968	-104	6968	104	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	1349	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTTAAAACACACCTTTC	NA	NA	NA	NA	NA	NA	NA	NA	33106104	33102405	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr11_-_33102853_33103985_33104061_33106002
ONT_simulated_read-1_8879157	chr9	+	805	6	ISM	ENSMUSG00000023495.14	ENST00000428823.6	1717	11	1845	460	1845	-422	3prime_fragment	FALSE	canonical	NA	NA	NA	NA	135	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTACCCTGCCCCATCTTT	NA	NA	NA	NA	NA	NA	NA	NA	106339068	106340748	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr9_+_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340329
ONT_simulated_read-1_9062489	chr12	+	2548	24	ISM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	115	7820	0	-7819	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGGTTTGCTTGTTCTGTG	NA	NA	NA	NA	NA	NA	NA	NA	76302186	76358757	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579
ONT_simulated_read-1_9735443	chr16	+	1486	6	FSM	ENSMUSG00000022744.13	ENST00000394185.6	2139	6	-35	688	0	-69	multi-exon	FALSE	canonical	NA	NA	NA	NA	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTAAACTTTGGTACATT	NA	NA	NA	NA	NA	NA	NA	NA	58548287	58553902	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	FSM_chr16_+_58548448_58549520_58549587_58549800_58550111_58551664_58551776_58552943_58553082_58553201
ONT_simulated_read-1_9988323	chr15	+	823	5	ISM	ENSMUSG00000022553.17	ENST00000534585.5	1724	7	64	1088	64	-1087	5prime_fragment	FALSE	canonical	NA	NA	NA	NA	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCACATGTGTATGGCAGT	NA	NA	NA	NA	NA	NA	NA	NA	76235608	76237485	mouse_sim_drna_ont	iso_detect_ref_brooks_drna_ont	ISM_chr15_+_76235860_76236623_76236753_76236845_76236975_76237046_76237213_76237337
