Tools	Samples	Protocols	Platforms	Protocols_Platforms	PET
Bambu	H1-DE	CapTrap	ONT	CapTrap_ONT	0.195652
Bambu	H1-DE	CapTrap	PacBio	CapTrap_PacBio	0.043478
Bambu	H1-DE	cDNA	ONT	cDNA_ONT	0.206522
Bambu	H1-DE	cDNA	PacBio	cDNA_PacBio	0.065217
Bambu	H1-DE	R2C2	ONT	R2C2_ONT	0.206522
Bambu	H1-hESC	CapTrap	ONT	CapTrap_ONT	0.23913
Bambu	H1-hESC	CapTrap	PacBio	CapTrap_PacBio	0.054348
Bambu	H1-hESC	cDNA	ONT	cDNA_ONT	0.228261
Bambu	H1-hESC	cDNA	PacBio	cDNA_PacBio	0.043478
Bambu	H1-hESC	dRNA	ONT	dRNA_ONT	0.032609
Bambu	H1-mix	CapTrap	ONT	CapTrap_ONT	0.217391
Bambu	H1-mix	CapTrap	PacBio	CapTrap_PacBio	0.086957
Bambu	H1-mix	cDNA	ONT	cDNA_ONT	0.358696
Bambu	H1-mix	cDNA	PacBio	cDNA_PacBio	0.130435
Bambu	H1-mix	dRNA	ONT	dRNA_ONT	0.043478
Bambu	H1-mix	R2C2	ONT	R2C2_ONT	0.23913
Bambu	H1-hESC	R2C2	ONT	R2C2_ONT	0.25
Bambu	H1-mix	CapTrap	ONT	CapTrap_ONT	0.217391
Bambu	H1-mix	CapTrap	PacBio	CapTrap_PacBio	0.086957
Bambu	H1-mix	cDNA	ONT	cDNA_ONT	0.358696
Bambu	H1-mix	cDNA	PacBio	cDNA_PacBio	0.130435
Bambu	H1-mix	dRNA	ONT	dRNA_ONT	0.043478
Bambu	H1-mix	R2C2	ONT	R2C2_ONT	0.23913
Bambu	WTC11	CapTrap	ONT	CapTrap_ONT	0.326087
Bambu	WTC11	CapTrap	PacBio	CapTrap_PacBio	0.119565
Bambu	WTC11	cDNA	ONT	cDNA_ONT	0.206522
Bambu	WTC11	cDNA	PacBio	cDNA_PacBio	0.119565
Bambu	WTC11	dRNA	ONT	dRNA_ONT	0.01087
Bambu	WTC11	R2C2	ONT	R2C2_ONT	0.108696
Bambu	WTC11	CapTrap	ONT	CapTrap_ONT	0.326087
Bambu	WTC11	CapTrap	PacBio	CapTrap_PacBio	0.119565
Bambu	WTC11	cDNA	ONT	cDNA_ONT	0.206522
Bambu	WTC11	cDNA	PacBio	cDNA_PacBio	0.119565
Bambu	WTC11	dRNA	ONT	dRNA_ONT	0.01087
Bambu	WTC11	R2C2	ONT	R2C2_ONT	0.108696
FLAIR	H1-DE	cDNA	ONT	cDNA_ONT	0.456522
FLAIR	H1-DE	cDNA	PacBio	cDNA_PacBio	0.445652
FLAIR	H1-DE	dRNA	ONT	dRNA_ONT	0.119565
FLAIR	H1-hESC	cDNA	ONT	cDNA_ONT	0.445652
FLAIR	H1-hESC	cDNA	PacBio	cDNA_PacBio	0.445652
FLAIR	H1-hESC	dRNA	ONT	dRNA_ONT	0.119565
FLAIR	H1-mix	cDNA	ONT	cDNA_ONT	0.456522
FLAIR	H1-mix	cDNA	PacBio	cDNA_PacBio	0.445652
FLAIR	H1-mix	dRNA	ONT	dRNA_ONT	0.119565
FLAIR	WTC11	cDNA	ONT	cDNA_ONT	0.445652
FLAIR	WTC11	cDNA	PacBio	cDNA_PacBio	0.478261
FLAIR	WTC11	dRNA	ONT	dRNA_ONT	0.173913
IsoQuant	H1-DE	CapTrap	ONT	CapTrap_ONT	0.684783
IsoQuant	H1-DE	CapTrap	PacBio	CapTrap_PacBio	0.521739
IsoQuant	H1-DE	cDNA	ONT	cDNA_ONT	0.521739
IsoQuant	H1-DE	cDNA	PacBio	cDNA_PacBio	0.630435
IsoQuant	H1-DE	dRNA	ONT	dRNA_ONT	0.141304
IsoQuant	H1-DE	R2C2	ONT	R2C2_ONT	0.619565
IsoQuant	H1-hESC	CapTrap	ONT	CapTrap_ONT	0.706522
IsoQuant	H1-hESC	CapTrap	PacBio	CapTrap_PacBio	0.532609
IsoQuant	H1-hESC	cDNA	ONT	cDNA_ONT	0.51087
IsoQuant	H1-hESC	cDNA	PacBio	cDNA_PacBio	0.597826
IsoQuant	H1-hESC	dRNA	ONT	dRNA_ONT	0.141304
IsoQuant	H1-mix	CapTrap	ONT	CapTrap_ONT	0.75
IsoQuant	H1-mix	CapTrap	PacBio	CapTrap_PacBio	0.652174
IsoQuant	H1-mix	cDNA	ONT	cDNA_ONT	0.565217
IsoQuant	H1-mix	cDNA	PacBio	cDNA_PacBio	0.663043
IsoQuant	H1-mix	dRNA	ONT	dRNA_ONT	0.141304
IsoQuant	H1-mix	R2C2	ONT	R2C2_ONT	0.663043
IsoQuant	H1-hESC	R2C2	ONT	R2C2_ONT	0.630435
IsoQuant	WTC11	CapTrap	ONT	CapTrap_ONT	0.793478
IsoQuant	WTC11	CapTrap	PacBio	CapTrap_PacBio	0.717391
IsoQuant	WTC11	cDNA	ONT	cDNA_ONT	0.586957
IsoQuant	WTC11	cDNA	PacBio	cDNA_PacBio	0.641304
IsoQuant	WTC11	dRNA	ONT	dRNA_ONT	0.217391
IsoQuant	WTC11	R2C2	ONT	R2C2_ONT	0.706522
IsoTools	H1-DE	cDNA	PacBio	cDNA_PacBio	0.586957
IsoTools	H1-hESC	cDNA	PacBio	cDNA_PacBio	0.576087
IsoTools	H1-mix	cDNA	PacBio	cDNA_PacBio	0.586957
IsoTools	WTC11	cDNA	PacBio	cDNA_PacBio	0.586957
TALON	H1-mix	CapTrap	ONT	CapTrap_ONT	0.076087
TALON	H1-mix	CapTrap	PacBio	CapTrap_PacBio	0.217391
TALON	H1-mix	cDNA	PacBio	cDNA_PacBio	0.184783
TALON	H1-mix	R2C2	ONT	R2C2_ONT	0.01087
TALON	WTC11	CapTrap	ONT	CapTrap_ONT	0.054348
TALON	WTC11	CapTrap	PacBio	CapTrap_PacBio	0.206522
TALON	WTC11	cDNA	PacBio	cDNA_PacBio	0.195652
NanoSim	H1-DE	cDNA	ONT	cDNA_ONT	0.717391
NanoSim	H1-DE	dRNA	ONT	dRNA_ONT	0.423913
NanoSim	H1-hESC	cDNA	ONT	cDNA_ONT	0.652174
NanoSim	H1-hESC	dRNA	ONT	dRNA_ONT	0.663043
NanoSim	H1-mix	dRNA	ONT	dRNA_ONT	0.326087
NanoSim	WTC11	dRNA	ONT	dRNA_ONT	0.391304
RSEM	H1-hESC	cDNA	Illumina	cDNA_Illumina	0.945652
RSEM	H1-DE	cDNA	Illumina	cDNA_Illumina	0.913043
RSEM	H1-mix	cDNA	Illumina	cDNA_Illumina	0.902174
RSEM	WTC11	cDNA	Illumina	cDNA_Illumina	0.945652
