Tools	Samples	Protocols	Platforms	Protocols_Platforms	Irreproducibility	ACVC	Consistency	ACC	Average Resolution Entropy
IsoTools	H1-DE	cDNA	PacBio	cDNA_PacBio	0.339573	0.886885	0.822165	9.292643	0.00788
IsoTools	H1-mix	cDNA	PacBio	cDNA_PacBio	0.329087	0.71978	0.805804	9.332063	0.007525
IsoTools	WTC11	cDNA	PacBio	cDNA_PacBio	0.310663	0.729631	0.821902	9.338163	0.007157
IsoTools	H1-hESC	cDNA	PacBio	cDNA_PacBio	0.627039	1.721854	0.690629	8.77776	0.008768
NanoSim	H1-DE	dRNA	ONT	dRNA_ONT	0.980515	3.074634	0.478874	7.973934	0.003193
NanoSim	H1-DE	cDNA	ONT	cDNA_ONT	0.137652	0.363564	0.900206	9.641637	0.004539
NanoSim	H1-mix	dRNA	ONT	dRNA_ONT	0.582231	1.336238	0.723194	9.021195	0.003007
NanoSim	WTC11	dRNA	ONT	dRNA_ONT	0.628324	1.576812	0.695986	8.904788	0.002861
NanoSim	H1-hESC	cDNA	ONT	cDNA_ONT	0.135238	0.330233	0.904008	9.651545	0.004462
NanoSim	H1-hESC	dRNA	ONT	dRNA_ONT	0.782549	2.652931	0.494567	8.160513	0.003532
TALON	H1-DE	CapTrap	ONT	CapTrap_ONT	0.619673	2.124417	0.755538	8.856137	0.007838
TALON	H1-DE	cDNA	PacBio	cDNA_PacBio	0.827302	3.040369	0.557098	7.921075	0.010536
TALON	H1-DE	dRNA	ONT	dRNA_ONT	1.135393	4.210078	0.406956	7.466663	0.006425
TALON	H1-DE	cDNA	ONT	cDNA_ONT	0.849936	2.771177	0.623698	8.329185	0.009208
TALON	H1-DE	R2C2	ONT	R2C2_ONT	0.193498	0.685761	0.900357	9.487114	0.010165
TALON	H1-DE	CapTrap	PacBio	CapTrap_PacBio	0.444216	1.545698	0.858705	9.131419	0.008067
TALON	H1-mix	dRNA	ONT	dRNA_ONT	0.541672	1.390764	0.7398	8.902377	0.003429
TALON	H1-mix	cDNA	ONT	cDNA_ONT	0.647721	2.105442	0.74741	8.829103	0.00646
TALON	H1-mix	cDNA	PacBio	cDNA_PacBio	0.354382	0.934849	0.81746	9.279394	0.007245
TALON	H1-mix	CapTrap	PacBio	CapTrap_PacBio	0.422249	1.311716	0.853563	9.116489	0.004985
TALON	H1-mix	R2C2	ONT	R2C2_ONT	0.807115	4.109919	0.464515	7.612639	0.007235
TALON	H1-mix	CapTrap	ONT	CapTrap_ONT	0.522756	1.676227	0.78549	8.88679	0.004835
TALON	WTC11	R2C2	ONT	R2C2_ONT	0.780231	3.669018	0.481891	7.648187	0.008152
TALON	WTC11	dRNA	ONT	dRNA_ONT	0.585795	1.817242	0.729278	8.755065	0.003371
TALON	WTC11	CapTrap	PacBio	CapTrap_PacBio	0.401994	1.382831	0.820598	9.098342	0.005715
TALON	WTC11	cDNA	PacBio	cDNA_PacBio	0.337529	0.919604	0.716495	9.260275	0.006267
TALON	WTC11	CapTrap	ONT	CapTrap_ONT	0.727997	2.776258	0.598165	8.139824	0.005567
TALON	WTC11	cDNA	ONT	cDNA_ONT	0.903159	5.341789	0.39576	7.37427	0.005454
TALON	H1-hESC	CapTrap	ONT	CapTrap_ONT	0.587378	1.756508	0.745581	8.740887	0.008184
TALON	H1-hESC	R2C2	ONT	R2C2_ONT	0.261274	0.885696	0.890053	9.298306	0.011279
TALON	H1-hESC	cDNA	ONT	cDNA_ONT	0.864174	2.74651	0.625443	8.376072	0.009388
TALON	H1-hESC	dRNA	ONT	dRNA_ONT	0.841863	3.387062	0.437251	7.868752	0.004964
TALON	H1-hESC	CapTrap	PacBio	CapTrap_PacBio	1.043574	4.972491	0.412307	7.32188	0.005821
TALON	H1-hESC	cDNA	PacBio	cDNA_PacBio	0.626283	1.920308	0.709187	8.727368	0.01374
FLAMES	H1-DE	CapTrap	ONT	CapTrap_ONT	0.112249	0.504335	0.926184	9.571117	0.009465
FLAMES	H1-DE	dRNA	ONT	dRNA_ONT	0.761132	4.40679	0.584603	7.1976	0.012237
FLAMES	H1-DE	cDNA	ONT	cDNA_ONT	0.18571	0.951958	0.846699	9.340563	0.005334
FLAMES	H1-DE	CapTrap	PacBio	CapTrap_PacBio	0.136388	0.474182	0.922296	9.559987	0.008582
FLAMES	H1-mix	dRNA	ONT	dRNA_ONT	0.3849	2.037897	0.721929	8.692319	0.006614
FLAMES	H1-mix	cDNA	ONT	cDNA_ONT	0.109548	0.402381	0.90472	9.62987	0.004961
FLAMES	H1-mix	CapTrap	PacBio	CapTrap_PacBio	0.182324	0.462824	0.876142	9.520433	0.008085
FLAMES	H1-mix	CapTrap	ONT	CapTrap_ONT	0.138962	0.48089	0.904365	9.564173	0.007029
FLAMES	WTC11	dRNA	ONT	dRNA_ONT	0.422461	2.046062	0.767946	8.669227	0.007245
FLAMES	WTC11	CapTrap	PacBio	CapTrap_PacBio	0.216692	0.759797	0.845211	9.397559	0.007789
FLAMES	WTC11	CapTrap	ONT	CapTrap_ONT	0.148548	0.531147	0.88779	9.529855	0.0065
FLAMES	WTC11	cDNA	ONT	cDNA_ONT	0.24015	0.973727	0.809277	9.294698	0.004556
FLAMES	H1-hESC	CapTrap	ONT	CapTrap_ONT	0.119121	0.306578	0.934655	9.657543	0.008144
FLAMES	H1-hESC	cDNA	ONT	cDNA_ONT	0.106615	0.373683	0.915172	9.634241	0.005129
FLAMES	H1-hESC	dRNA	ONT	dRNA_ONT	0.668994	4.625025	0.404425	7.519564	0.008379
FLAMES	H1-hESC	CapTrap	PacBio	CapTrap_PacBio	0.215969	0.860064	0.880033	9.35286	0.007522
IsoQuant	H1-DE	CapTrap	ONT	CapTrap_ONT	0.10524	0.390204	0.940654	9.62635	0.007429
IsoQuant	H1-DE	cDNA	PacBio	cDNA_PacBio	0.306323	0.89128	0.853286	9.326301	0.012336
IsoQuant	H1-DE	dRNA	ONT	dRNA_ONT	0.766898	3.771453	0.584259	7.755493	0.010923
IsoQuant	H1-DE	cDNA	ONT	cDNA_ONT	0.105774	0.376112	0.945057	9.63937	0.004886
IsoQuant	H1-DE	R2C2	ONT	R2C2_ONT	0.168183	0.572769	0.907634	9.523791	0.008048
IsoQuant	H1-DE	CapTrap	PacBio	CapTrap_PacBio	0.296269	0.884853	0.838509	9.322496	0.008651
IsoQuant	H1-mix	dRNA	ONT	dRNA_ONT	0.320305	1.307037	0.875872	9.281839	0.007698
IsoQuant	H1-mix	cDNA	ONT	cDNA_ONT	0.095151	0.284841	0.942901	9.683264	0.004676
IsoQuant	H1-mix	cDNA	PacBio	cDNA_PacBio	0.298029	0.827605	0.867608	9.354971	0.012803
IsoQuant	H1-mix	CapTrap	PacBio	CapTrap_PacBio	0.32728	0.9603	0.812514	9.276239	0.00698
IsoQuant	H1-mix	R2C2	ONT	R2C2_ONT	0.310502	0.823072	0.809862	9.341992	0.008539
IsoQuant	H1-mix	CapTrap	ONT	CapTrap_ONT	0.126396	0.453498	0.923242	9.574061	0.006217
IsoQuant	WTC11	R2C2	ONT	R2C2_ONT	0.342532	1.092927	0.800663	9.237301	0.009823
IsoQuant	WTC11	dRNA	ONT	dRNA_ONT	0.368445	1.578886	0.869339	9.158806	0.007309
IsoQuant	WTC11	CapTrap	PacBio	CapTrap_PacBio	0.319584	0.984404	0.821949	9.251551	0.007868
IsoQuant	WTC11	cDNA	PacBio	cDNA_PacBio	0.300746	1.001543	0.851108	9.208142	0.012449
IsoQuant	WTC11	CapTrap	ONT	CapTrap_ONT	0.139051	0.465124	0.909725	9.565742	0.006416
IsoQuant	WTC11	cDNA	ONT	cDNA_ONT	0.1398	0.498579	0.922467	9.544387	0.00502
IsoQuant	H1-hESC	CapTrap	ONT	CapTrap_ONT	0.123713	0.370124	0.933745	9.623164	0.007074
IsoQuant	H1-hESC	R2C2	ONT	R2C2_ONT	0.178289	0.555407	0.896685	9.517527	0.009554
IsoQuant	H1-hESC	cDNA	ONT	cDNA_ONT	0.105072	0.31837	0.938246	9.660864	0.005052
IsoQuant	H1-hESC	dRNA	ONT	dRNA_ONT	0.631914	2.860533	0.534395	7.86416	0.008827
IsoQuant	H1-hESC	CapTrap	PacBio	CapTrap_PacBio	0.396989	1.403764	0.82737	9.152613	0.007346
IsoQuant	H1-hESC	cDNA	PacBio	cDNA_PacBio	0.557192	1.910923	0.754466	8.814338	0.013117
Bambu	H1-mix	dRNA	ONT	dRNA_ONT	0.423554	2.250162	0.873172	9.046718	0.023117
Bambu	H1-mix	cDNA	ONT	cDNA_ONT	0.211023	0.469494	0.932562	9.496167	0.014499
Bambu	H1-mix	cDNA	PacBio	cDNA_PacBio	0.364595	2.014086	0.91146	9.144546	0.031242
Bambu	H1-mix	CapTrap	PacBio	CapTrap_PacBio	0.350091	0.963141	0.833703	9.230084	0.006443
Bambu	H1-mix	R2C2	ONT	R2C2_ONT	0.674178	3.893238	0.797795	8.32843	0.020549
Bambu	H1-mix	CapTrap	ONT	CapTrap_ONT	0.199365	0.504948	0.897947	9.492143	0.005864
Bambu	WTC11	R2C2	ONT	R2C2_ONT	0.726797	3.346757	0.712765	8.34377	0.00806
Bambu	WTC11	dRNA	ONT	dRNA_ONT	0.539683	1.807337	0.769981	8.8179	0.005089
Bambu	WTC11	CapTrap	PacBio	CapTrap_PacBio	0.337089	1.007844	0.83214	9.207996	0.006732
Bambu	WTC11	cDNA	PacBio	cDNA_PacBio	0.307397	0.914714	0.850574	9.240673	0.009385
Bambu	WTC11	CapTrap	ONT	CapTrap_ONT	0.198788	0.549977	0.887635	9.486886	0.006159
Bambu	WTC11	cDNA	ONT	cDNA_ONT	0.227901	0.633665	0.876508	9.42284	0.005108
Bambu	H1-DE	CapTrap	ONT	CapTrap_ONT	0.252503	0.500165	0.863922	9.467386	0.004896
Bambu	H1-DE	cDNA	PacBio	cDNA_PacBio	0.422098	1.169887	0.777363	9.169269	0.009662
Bambu	H1-DE	dRNA	ONT	dRNA_ONT	1.064866	3.562962	0.436977	7.523469	0.004885
Bambu	H1-DE	cDNA	ONT	cDNA_ONT	0.247148	0.497263	0.864957	9.476652	0.004676
Bambu	H1-DE	R2C2	ONT	R2C2_ONT	0.607813	2.928502	0.70589	8.627378	0.004816
Bambu	H1-DE	CapTrap	PacBio	CapTrap_PacBio	0.425649	1.074322	0.775412	9.163051	0.005854
Bambu	H1-mix	dRNA	ONT	dRNA_ONT	0.606498	1.723421	0.723917	8.767773	0.007067
Bambu	H1-mix	cDNA	ONT	cDNA_ONT	0.413345	0.7581	0.805492	9.17886	0.005021
Bambu	H1-mix	cDNA	PacBio	cDNA_PacBio	0.488123	1.039725	0.785453	9.001032	0.01404
Bambu	H1-mix	CapTrap	PacBio	CapTrap_PacBio	0.421948	1.080203	0.787317	9.149761	0.005464
Bambu	H1-mix	R2C2	ONT	R2C2_ONT	0.778572	2.820747	0.688166	8.519118	0.00939
Bambu	H1-mix	CapTrap	ONT	CapTrap_ONT	0.265526	0.553955	0.854749	9.419658	0.004881
Bambu	WTC11	R2C2	ONT	R2C2_ONT	0.795827	3.344172	0.662177	8.357321	0.007276
Bambu	WTC11	dRNA	ONT	dRNA_ONT	0.650828	1.867839	0.687235	8.708028	0.004086
Bambu	WTC11	CapTrap	PacBio	CapTrap_PacBio	0.398655	1.119719	0.783587	9.151294	0.005968
Bambu	WTC11	cDNA	PacBio	cDNA_PacBio	0.360569	0.981054	0.813582	9.188312	0.008894
Bambu	WTC11	CapTrap	ONT	CapTrap_ONT	0.245065	0.589422	0.852549	9.439378	0.005371
Bambu	WTC11	cDNA	ONT	cDNA_ONT	0.284087	0.679787	0.837941	9.361594	0.004642
Bambu	H1-hESC	CapTrap	ONT	CapTrap_ONT	0.261577	0.482341	0.859001	9.455392	0.005027
Bambu	H1-hESC	R2C2	ONT	R2C2_ONT	0.621706	3.004557	0.700399	8.593444	0.005663
Bambu	H1-hESC	cDNA	ONT	cDNA_ONT	0.230275	0.439262	0.869055	9.517987	0.004668
Bambu	H1-hESC	dRNA	ONT	dRNA_ONT	0.823496	3.012296	0.433375	7.744207	0.00633
Bambu	H1-hESC	CapTrap	PacBio	CapTrap_PacBio	0.510861	1.363345	0.7459	9.007645	0.005093
Bambu	H1-hESC	cDNA	PacBio	cDNA_PacBio	0.714145	2.149073	0.650925	8.573863	0.009844
FLAIR	H1-DE	cDNA	PacBio	cDNA_PacBio	0.367443	1.302699	0.895054	9.200599	0.00835
FLAIR	H1-DE	dRNA	ONT	dRNA_ONT	1.055039	4.357977	0.423514	7.164393	0.008471
FLAIR	H1-DE	cDNA	ONT	cDNA_ONT	0.179146	0.495753	0.864527	9.534401	0.00386
FLAIR	H1-mix	dRNA	ONT	dRNA_ONT	0.393936	1.977633	0.858671	8.979054	0.007422
FLAIR	H1-mix	cDNA	ONT	cDNA_ONT	0.163484	0.423382	0.851076	9.579675	0.00369
FLAIR	H1-mix	cDNA	PacBio	cDNA_PacBio	0.325996	1.053469	0.849305	9.243809	0.008501
FLAIR	WTC11	dRNA	ONT	dRNA_ONT	0.485908	2.522888	0.80898	8.694722	0.007336
FLAIR	WTC11	cDNA	PacBio	cDNA_PacBio	0.363988	1.187027	0.840935	9.155983	0.006728
FLAIR	WTC11	cDNA	ONT	cDNA_ONT	0.698964	3.421459	0.630541	8.163336	0.002236
FLAIR	H1-hESC	cDNA	ONT	cDNA_ONT	0.177705	0.467372	0.854151	9.553145	0.003969
FLAIR	H1-hESC	dRNA	ONT	dRNA_ONT	0.767915	3.078165	0.462107	7.537632	0.007852
FLAIR	H1-hESC	cDNA	PacBio	cDNA_PacBio	0.634273	1.945442	0.674688	8.581976	0.009101
RSEM	H1-mix	cDNA	Illumina	cDNA_Illumina	0.34932	0.772249	0.833344	9.493979	0.00343
RSEM	WTC11	cDNA	Illumina	cDNA_Illumina	0.357497	0.902121	0.821623	9.44183	0.003254
RSEM	H1-hESC	cDNA	Illumina	cDNA_Illumina	0.358329	0.709444	0.855291	9.556831	0.003207
RSEM	H1-DE	cDNA	Illumina	cDNA_Illumina	0.327188	0.711185	0.856403	9.535473	0.00306
