##fileformat=VCFv4.1
##FILTER=<ID=PASS,Description="All filters passed">
##fileDate=2015-08-04
##source=IlluminaPlatinumGenomes, version: hg38_2.0.1
##reference=hg38
##contig=<ID=chr1,length=248956422>
##contig=<ID=chr2,length=242193529>
##contig=<ID=chr3,length=198295559>
##contig=<ID=chr4,length=190214555>
##contig=<ID=5,length=181538259>
##contig=<ID=6,length=170805979>
##contig=<ID=chr7,length=159345973>
##contig=<ID=chr8,length=145138636>
##contig=<ID=chr9,length=138394717>
##contig=<ID=chr10,length=133797422>
##contig=<ID=chr11,length=135086622>
##contig=<ID=chr12,length=133275309>
##contig=<ID=13,length=114364328>
##contig=<ID=chr14,length=107043718>
##contig=<ID=chr15,length=101991189>
##contig=<ID=chr16,length=90338345>
##contig=<ID=17,length=83257441>
##contig=<ID=chr18,length=80373285>
##contig=<ID=19,length=58617616>
##contig=<ID=chr20,length=64444167>
##contig=<ID=chr21,length=46709983>
##contig=<ID=chr22,length=50818468>
##contig=<ID=chrX,length=156040895>
##Method=<ID=isaac2,Description="Aligner=isaac_aligner-02.15.02.28;VariantCaller=isaac_variant_caller-2.1.4.2">
##Method=<ID=bwa_freebayes,Description="Aligner=bwa-mem-0.7.12;VariantCaller=freebayes-0.9.21-15-g8a06a0b">
##Method=<ID=bwa_platypus,Description="Aligner=bwa-mem-0.7.12;VariantCaller=platypus-0.8.1">
##Method=<ID=bwa_gatk3,Description="Aligner=bwa-mem-0.7.12;VariantCaller=gatk-3.2.2">
##FILTER=<ID=Silver,Description="Medium-confidence call. It can be included in order to achieve even higher completeness of the truth set.">
##FILTER=<ID=OverlapConflict,Description="Discordant high-confidence calls from different pipelines.">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##INFO=<ID=metal,Number=1,Type=String,Description="Confidence tranche. Platinum is better than silver.">
##INFO=<ID=isaac2,Number=2,Type=String,Description="Variant calling method.">
##INFO=<ID=bwa_freebayes,Number=2,Type=String,Description="Variant calling method.">
##INFO=<ID=bwa_platypus,Number=2,Type=String,Description="Variant calling method.">
##INFO=<ID=bwa_gatk3,Number=2,Type=String,Description="Variant calling method.">
##INFO=<ID=dist2closest,Number=1,Type=Integer,Description="Distance to closest variant.">
##bcftools_viewVersion=1.3+htslib-1.3
##bcftools_viewCommand=view -r 5:69216819-71614443 ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/analysis/Illumina_PlatinumGenomes_NA12877_NA12878_09162015/hg38/2.0.1/NA12878/NA12878.vcf.gz
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NA12878
5	69216907	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=199	GT	1|1
5	69217177	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=270	GT	1|0
5	69217463	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=282	GT	1|0
5	69217745	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=282	GT	1|0
5	69218876	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=119	GT	1|1
5	69218995	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=119	GT	1|0
5	69219236	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=241	GT	1|0
5	69219666	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=340	GT	0|1
5	69220006	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=93	GT	1|0
5	69220099	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=93	GT	1|1
5	69220511	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=74	GT	0|1
5	69220585	.	G	A	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=74	GT	0|1
5	69220894	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=309	GT	0|1
5	69222520	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=273	GT	1|1
5	69222793	.	G	GT	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=58	GT	1|1
5	69222851	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=58	GT	0|1
5	69223049	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=7	GT	0|1
5	69223056	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=7	GT	1|0
5	69223159	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=103	GT	0|1
5	69223301	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=142	GT	0|1
5	69223464	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=163	GT	1|0
5	69223893	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=138	GT	1|1
5	69224031	.	TA	T	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=.;dist2closest=138	GT	0/1
5	69224375	.	A	AG	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=14	GT	1|1
5	69224389	.	CAA	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=14	GT	0|1
5	69224458	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=67	GT	1|1
5	69224588	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=130	GT	1|0
5	69225080	.	G	GA	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:2;bwa_freebayes=.;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=HD:0,LOOHD:0;dist2closest=207	GT	0|1
5	69225287	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:5,LOOHD:4;dist2closest=207	GT	1|0
5	69225516	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=227	GT	0|1
5	69225743	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=128	GT	1|1
5	69225871	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=128	GT	1|0
5	69226471	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=325	GT	0|1
5	69226796	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=325	GT	1|1
5	69228179	.	C	CT	0	PASS	metal=platinum;isaac2=HD:4,LOOHD:4;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:1,LOOHD:1;dist2closest=704	GT	1|1
5	69228883	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=317	GT	1|1
5	69229200	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=317	GT	1|0
5	69230236	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=455	GT	0|1
5	69230691	.	AGT	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=17	GT	0|1
5	69230710	.	A	AAAAAG	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=17	GT	1|1
5	69231276	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=254	GT	1|0
5	69231530	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=254	GT	0|1
5	69232001	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=230	GT	1|1
5	69232231	.	GAGA	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=24	GT	1|0
5	69232258	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=24	GT	0|1
5	69233016	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=470	GT	1|0
5	69233486	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=192	GT	0|1
5	69233678	.	AAAAC	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=192	GT	1|0
5	69233956	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=274	GT	1|0
5	69234483	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=527	GT	1|0
5	69235272	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=154	GT	0|1
5	69235426	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=154	GT	1|1
5	69235677	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=189	GT	1|1
5	69235866	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=189	GT	1|1
5	69236239	.	TAA	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=137	GT	0|1
5	69236378	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=137	GT	1|0
5	69236541	.	CT	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1	GT	0|1
5	69236543	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1	GT	0|1
5	69237014	.	G	GT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=135	GT	1|0
5	69237149	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=135	GT	1|1
5	69238285	.	CT	C	0	PASS	metal=platinum;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=201	GT	1|1
5	69238487	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=11	GT	1|1
5	69238498	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=11	GT	1|0
5	69238663	.	A	ATT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=165	GT	0|1
5	69239488	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=249	GT	1|1
5	69239737	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=52	GT	0|1
5	69239789	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=52	GT	1|1
5	69239876	.	A	AT	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=87	GT	1|0
5	69240395	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=519	GT	1|0
5	69241205	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=241	GT	1|1
5	69241446	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=100	GT	1|0
5	69241546	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=100	GT	0|1
5	69241653	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=107	GT	0|1
5	69242338	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=77	GT	1|1
5	69242415	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=77	GT	1|1
5	69242652	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=237	GT	1|0
5	69243629	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=152	GT	1|0
5	69243781	.	A	AT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=152	GT	1|1
5	69244467	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=61	GT	1|0
5	69244528	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=13	GT	1|1
5	69244541	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=13	GT	1|1
5	69245338	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=84	GT	1|0
5	69245422	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=84	GT	1|0
5	69246222	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=728	GT	1|0
5	69246950	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=322	GT	1|0
5	69247272	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=48	GT	1|0
5	69247320	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=48	GT	0|1
5	69247468	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=43	GT	1|0
5	69247511	.	C	CT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=43	GT	0|1
5	69247765	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=254	GT	1|1
5	69248802	.	C	CTT	0	Silver	metal=silver;isaac2=HD:3,LOOHD:3;bwa_freebayes=.;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=HD:3,LOOHD:2;dist2closest=757	GT	0/1
5	69249559	.	G	GA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=16	GT	0|1
5	69249575	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=16	GT	0|1
5	69250327	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=552	GT	1|1
5	69250879	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=218	GT	1|0
5	69251097	.	C	CTT	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=218	GT	1|0
5	69251548	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=451	GT	1|1
5	69252524	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=.;dist2closest=243	GT	1|0
5	69252767	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=243	GT	1|0
5	69253846	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=202	GT	1|0
5	69254048	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=44	GT	1|0
5	69254092	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=44	GT	0|1
5	69254352	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=169	GT	1|1
5	69254521	.	C	CA	0	Silver	metal=silver;isaac2=HD:4,LOOHD:3;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:2,LOOHD:2;dist2closest=169	GT	1|1
5	69254804	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=4	GT	1|0
5	69254808	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=4	GT	1|0
5	69255680	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=212	GT	1|1
5	69255892	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=58	GT	1|0
5	69255950	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=58	GT	0|1
5	69256204	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=254	GT	0|1
5	69257931	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=606	GT	1|1
5	69258537	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=606	GT	1|0
5	69259464	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=663	GT	0|1
5	69260127	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=663	GT	1|1
5	69261448	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=27	GT	0|1
5	69261475	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=15	GT	1|0
5	69261490	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=15	GT	1|1
5	69261526	.	A	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=.;dist2closest=27	GT	0/1
5	69261553	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=27	GT	0|1
5	69261771	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=4	GT	1|0
5	69261775	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=4	GT	0|1
5	69261940	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=165	GT	0|1
5	69262455	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=213	GT	1|0
5	69262668	.	C	CA	0	Silver	metal=silver;isaac2=HD:5,LOOHD:5;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=55	GT	1|1
5	69262723	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=55	GT	1|1
5	69263254	.	GT	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=117	GT	0|1
5	69263372	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=117	GT	1|1
5	69264755	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=287	GT	1|1
5	69265042	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=46	GT	0|1
5	69265088	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=46	GT	1|0
5	69265652	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=254	GT	1|0
5	69265906	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2	GT	1|1
5	69265908	.	T	TA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2	GT	1|0
5	69265938	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=30	GT	0|1
5	69266082	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=144	GT	1|0
5	69266387	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=305	GT	1|0
5	69266708	.	G	GAA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=321	GT	0|1
5	69267238	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=441	GT	1|1
5	69267679	.	CTG	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=441	GT	1|0
5	69268258	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=576	GT	0|1
5	69268834	.	C	CA,CAAA	0	Silver	metal=silver;isaac2=HD:4,LOOHD:4;bwa_freebayes=.;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=324	GT	1/2
5	69269158	.	TA	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=324	GT	0|1
5	69271513	.	CTT	C,CT	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:7,LOOHD:6;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=202	GT	1|2
5	69271717	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=202	GT	1|0
5	69271931	.	G	GT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=193	GT	0|1
5	69272124	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=24	GT	1|1
5	69272148	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=24	GT	1|0
5	69272582	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=434	GT	1|0
5	69273489	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=574	GT	1|1
5	69274063	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=67	GT	0|1
5	69274130	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=67	GT	1|0
5	69274836	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=706	GT	1|0
5	69276841	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=679	GT	1|1
5	69277520	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=20	GT	1|1
5	69277540	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=20	GT	0|1
5	69277595	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=17	GT	1|0
5	69277612	.	C	CA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=17	GT	0|1
5	69278003	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=169	GT	1|1
5	69278172	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=33	GT	1|1
5	69278205	.	C	CTTTAT	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:0;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=33	GT	1|1
5	69278354	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=18	GT	1|0
5	69278372	.	A	AT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=18	GT	1|0
5	69278865	.	A	AT	0	Silver	metal=silver;isaac2=HD:4,LOOHD:3;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:4,LOOHD:4;dist2closest=53	GT	1|1
5	69278918	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=53	GT	0|1
5	69279198	.	GTT	GT,G	0	Silver	metal=silver;isaac2=HD:3,LOOHD:2;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:0,LOOHD:0;dist2closest=136	GT	1|1
5	69279336	.	ACAGGTGC	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=11	GT	0|1
5	69279354	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=11	GT	0|1
5	69279438	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=84	GT	1|0
5	69279843	.	A	AC	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=72	GT	1|0
5	69279915	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=72	GT	1|0
5	69280003	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=88	GT	1|0
5	69281893	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=3	GT	0|1
5	69281896	.	T	TG	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=3	GT	1|0
5	69281976	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=80	GT	1|0
5	69282067	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=91	GT	0|1
5	69282601	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=534	GT	1|1
5	69283220	.	C	CTT	0	Silver	metal=silver;isaac2=HD:1,LOOHD:1;bwa_freebayes=.;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=.;dist2closest=572	GT	0/1
5	69283792	.	AT	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=319	GT	1|0
5	69284112	.	A	AT	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=6	GT	0|1
5	69284118	.	TA	T	0	OverlapConflict	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=0	GT	0|1
5	69284119	.	A	T	0	OverlapConflict	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=0	GT	0|1
5	69285890	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=381	GT	1|1
5	69286271	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:5,LOOHD:5;dist2closest=199	GT	0|1
5	69286470	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=199	GT	1|0
5	69286992	.	G	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=.;dist2closest=518	GT	0/1
5	69287510	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=148	GT	0|1
5	69287658	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=148	GT	0|1
5	69288139	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=281	GT	0|1
5	69288420	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=281	GT	0|1
5	69289243	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=619	GT	0|1
5	69289862	.	CA	C	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=.;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:1,LOOHD:1;dist2closest=619	GT	0/1
5	69290629	.	CT	C	0	Silver	metal=silver;isaac2=HD:3,LOOHD:3;bwa_freebayes=.;bwa_platypus=HD:9,LOOHD:9;bwa_gatk3=HD:2,LOOHD:2;dist2closest=554	GT	0/1
5	69291184	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=98	GT	0|1
5	69291282	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=98	GT	0|1
5	69291634	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=45	GT	0|1
5	69291679	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=45	GT	0|1
5	69293647	.	C	CA	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:2;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:2,LOOHD:2;dist2closest=921	GT	0|1
5	69294568	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=5	GT	1|1
5	69294573	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=5	GT	1|1
5	69295886	.	C	CT	0	Silver	metal=silver;isaac2=HD:4,LOOHD:4;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:4,LOOHD:4;dist2closest=243	GT	1|1
5	69296129	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=243	GT	1|1
5	69297045	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=51	GT	0|1
5	69297096	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=51	GT	1|1
5	69297594	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=454	GT	1|0
5	69298048	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=115	GT	1|0
5	69298163	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=115	GT	1|1
5	69298730	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=151	GT	1|1
5	69298881	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=151	GT	1|1
5	69299179	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=177	GT	1|1
5	69299356	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=8	GT	1|1
5	69299364	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=8	GT	1|1
5	69299373	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=9	GT	1|1
5	69299400	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=27	GT	1|1
5	69299757	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=357	GT	1|1
5	69300241	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=484	GT	1|1
5	69300822	.	GC	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=249	GT	1|1
5	69301072	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=21	GT	1|1
5	69301093	.	C	CAA	0	Silver	metal=silver;isaac2=HD:7,LOOHD:6;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:4,LOOHD:4;bwa_gatk3=HD:5,LOOHD:5;dist2closest=21	GT	1|1
5	69301734	.	CA	C	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=111	GT	1|1
5	69301846	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=52	GT	1|1
5	69301898	.	A	AAAT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=52	GT	1|0
5	69302160	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=73	GT	1|1
5	69302233	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=73	GT	1|1
5	69302339	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=106	GT	1|1
5	69303012	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=58	GT	1|1
5	69303070	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=58	GT	1|1
5	69304105	.	AT	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:1,LOOHD:1;dist2closest=300	GT	1|1
5	69304406	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=16	GT	1|1
5	69304422	.	C	CT	0	PASS	metal=platinum;isaac2=HD:4,LOOHD:4;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=16	GT	1|1
5	69304511	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=89	GT	1|1
5	69304872	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=332	GT	1|1
5	69305204	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=332	GT	1|1
5	69306036	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=123	GT	1|1
5	69306159	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=123	GT	1|1
5	69306919	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=579	GT	1|1
5	69307498	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=183	GT	1|1
5	69307681	.	C	CA	0	PASS	metal=platinum;isaac2=HD:4,LOOHD:4;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:0,LOOHD:0;dist2closest=183	GT	1|1
5	69308456	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=82	GT	1|1
5	69308538	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=82	GT	1|1
5	69308776	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=238	GT	1|1
5	69309321	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=545	GT	1|1
5	69310784	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=673	GT	1|1
5	69311457	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=423	GT	1|1
5	69311880	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=423	GT	1|1
5	69313357	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=701	GT	1|1
5	69314058	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=124	GT	1|1
5	69314182	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=124	GT	1|1
5	69314611	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=185	GT	1|1
5	69314796	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=86	GT	1|1
5	69314882	.	AAC	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=86	GT	1|1
5	69315263	.	T	TA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=187	GT	1|1
5	69315450	.	C	A	0	PASS	metal=platinum;isaac2=HD:8,LOOHD:8;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=181	GT	1|1
5	69315631	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=125	GT	1|1
5	69315756	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=18	GT	1|1
5	69315774	.	A	AAG	0	PASS	metal=platinum;isaac2=HD:3,LOOHD:2;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:2,LOOHD:2;dist2closest=18	GT	1|1
5	69315872	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=98	GT	1|1
5	69319180	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=3308	GT	1|1
5	69322971	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=3092	GT	1|1
5	69326063	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2641	GT	1|1
5	69328704	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2641	GT	1|1
5	69331382	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=597	GT	1|1
5	69331979	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=597	GT	1|1
5	69334785	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=329	GT	1|1
5	69335114	.	CT	C	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=329	GT	1|1
5	69337621	.	CT	C	0	PASS	metal=platinum;isaac2=HD:5,LOOHD:4;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=598	GT	1|1
5	69338220	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=598	GT	1|1
5	69340419	.	CA	C	0	Silver	metal=silver;isaac2=HD:5,LOOHD:5;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=854	GT	1|1
5	69341274	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=854	GT	0|1
5	69346643	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=29	GT	1|1
5	69346672	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=29	GT	1|1
5	69347285	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=224	GT	1|1
5	69347509	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=224	GT	0|1
5	69348690	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=97	GT	0|1
5	69348787	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=97	GT	1|1
5	69349138	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=351	GT	1|1
5	69349625	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=.;dist2closest=487	GT	1|0
5	69352715	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=228	GT	0|1
5	69352943	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=228	GT	1|1
5	69353944	.	A	AT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:5,LOOHD:4;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=466	GT	1|1
5	69354410	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=466	GT	1|1
5	69356411	.	A	AG	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2001	GT	1|1
5	69359111	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1197	GT	1|1
5	69360308	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=206	GT	1|1
5	69360514	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=206	GT	1|1
5	69361681	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=216	GT	1|1
5	69361897	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=216	GT	1|1
5	69362299	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=373	GT	1|1
5	69362672	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=373	GT	1|0
5	69368688	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=132	GT	1|1
5	69368820	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=132	GT	1|1
5	69369226	.	AC	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:0,LOOHD:0;dist2closest=9	GT	0|1
5	69369236	.	GC	G	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=9	GT	0|1
5	69369909	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=73	GT	1|1
5	69369982	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=73	GT	1|1
5	69373663	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=611	GT	1|1
5	69374274	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=611	GT	1|1
5	69374924	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=650	GT	0|1
5	69375626	.	G	GTC	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:5,LOOHD:4;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=702	GT	1|1
5	69376332	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=430	GT	1|1
5	69376762	.	C	CT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=430	GT	1|1
5	69377339	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=339	GT	1|1
5	69377678	.	CAT	C	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=.;dist2closest=41	GT	1/1
5	69377721	.	ATTTTC	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:2,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=41	GT	1|1
5	69379189	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1463	GT	1|1
5	69383766	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=229	GT	1|1
5	69383995	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=229	GT	1|1
5	69384516	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=521	GT	1|1
5	69385796	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1280	GT	1|1
5	69388011	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=600	GT	1|1
5	69388611	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=600	GT	1|1
5	69389580	.	C	CA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=40	GT	1|1
5	69389620	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=40	GT	1|1
5	69389858	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=29	GT	1|1
5	69389887	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=29	GT	1|1
5	69390695	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=257	GT	1|1
5	69390952	.	C	CA	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:3,LOOHD:3;dist2closest=257	GT	1|1
5	69392358	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=423	GT	1|1
5	69392781	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=423	GT	1|1
5	69393945	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=653	GT	1|1
5	69394598	.	T	TTTAA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=653	GT	1|1
5	69396091	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=457	GT	1|1
5	69396548	.	T	TA	0	Silver	metal=silver;isaac2=HD:2,LOOHD:1;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:1,LOOHD:1;dist2closest=457	GT	1|1
5	69397501	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=841	GT	1|1
5	69398342	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2	GT	1|1
5	69398344	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2	GT	1|1
5	69398868	.	T	TAA	0	Silver	metal=silver;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:5,LOOHD:5;dist2closest=150	GT	1/1
5	69399018	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=150	GT	0|1
5	69399580	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=105	GT	0|1
5	69399685	.	C	CGTT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=105	GT	1|1
5	69400113	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=95	GT	1|0
5	69400208	.	G	GTTTATTTA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=95	GT	1|1
5	69400510	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=116	GT	1|1
5	69400626	.	G	GT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=116	GT	1|1
5	69401023	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=397	GT	1|1
5	69401499	.	T	TA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=352	GT	1|1
5	69401851	.	C	CA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=352	GT	1|1
5	69402271	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=420	GT	1|1
5	69402939	.	C	CA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=668	GT	1|1
5	69404625	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=144	GT	1|1
5	69404769	.	CA	C	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=144	GT	1|1
5	69405974	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=647	GT	1|1
5	69406621	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=181	GT	1|1
5	69406802	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=181	GT	1|1
5	69407362	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=560	GT	1|1
5	69408274	.	TTTA	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=99	GT	1|0
5	69408376	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=99	GT	1|1
5	69408885	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=436	GT	1|1
5	69409321	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=56	GT	1|1
5	69409377	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=56	GT	1|1
5	69410425	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=186	GT	1|1
5	69410611	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=186	GT	1|1
5	69410959	.	G	GTCTA	0	Silver	metal=silver;isaac2=HD:4,LOOHD:4;bwa_freebayes=HD:3,LOOHD:2;bwa_platypus=HD:6,LOOHD:6;bwa_gatk3=HD:0,LOOHD:0;dist2closest=308	GT	1|1
5	69411267	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=69	GT	1|1
5	69411336	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=69	GT	1|1
5	69411545	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=209	GT	1|1
5	69412984	.	CA	C	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=697	GT	1|1
5	69413682	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=141	GT	1|1
5	69413823	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=141	GT	1|1
5	69414843	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1020	GT	1|1
5	69416945	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1639	GT	1|1
5	69418584	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=899	GT	1|1
5	69419483	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=800	GT	1|1
5	69420283	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=353	GT	1|0
5	69420636	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=353	GT	1|1
5	69421635	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=477	GT	1|1
5	69422112	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=477	GT	1|1
5	69422900	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=273	GT	1|1
5	69423173	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=273	GT	1|1
5	69423634	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=77	GT	1|1
5	69423711	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=9	GT	1|1
5	69423720	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=9	GT	1|1
5	69425029	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=49	GT	1|1
5	69425078	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=49	GT	1|1
5	69425258	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=142	GT	1|1
5	69425400	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=142	GT	1|1
5	69426320	.	C	CATTATTATTATT	0	PASS	metal=platinum;isaac2=HD:6,LOOHD:6;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=207	GT	1|1
5	69426527	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=207	GT	1|1
5	69428182	.	G	GA	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=485	GT	1|1
5	69428667	.	T	A	0	PASS	metal=platinum;isaac2=HD:6,LOOHD:6;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=424	GT	1|1
5	69429091	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=151	GT	1|1
5	69429242	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=61	GT	1|1
5	69429303	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=61	GT	1|1
5	69429891	.	GTTAT	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=88	GT	1|1
5	69429983	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=88	GT	1|1
5	69430397	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=414	GT	1|1
5	69431264	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=242	GT	1|1
5	69431506	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=242	GT	1|1
5	69433462	.	CT	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=122	GT	1|1
5	69433585	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=122	GT	1|1
5	69433855	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=270	GT	1|1
5	69434407	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=207	GT	1|1
5	69434614	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=207	GT	1|1
5	69435070	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=456	GT	1|1
5	69436448	.	CACACAT	C	0	Silver	metal=silver;isaac2=HD:6,LOOHD:5;bwa_freebayes=.;bwa_platypus=HD:4,LOOHD:4;bwa_gatk3=HD:6,LOOHD:6;dist2closest=185	GT	0/1
5	69436639	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=185	GT	1|1
5	69437176	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=12	GT	1|1
5	69437188	.	CAA	CA,C	0	Silver	metal=silver;isaac2=HD:8,LOOHD:7;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:2,LOOHD:2;dist2closest=12	GT	1/2
5	69437280	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=90	GT	1|1
5	69437381	.	TAA	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:4,LOOHD:4;dist2closest=101	GT	1/1
5	69437818	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=53	GT	1|1
5	69437871	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=53	GT	1|1
5	69438574	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=37	GT	1|1
5	69438611	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=37	GT	1|1
5	69439015	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=270	GT	1|1
5	69439285	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=270	GT	1|1
5	69444826	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=406	GT	1|1
5	69445232	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=283	GT	1|1
5	69445515	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=118	GT	1|1
5	69445633	.	CTTTA	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=118	GT	1|1
5	69446090	.	G	GCTAC	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=110	GT	1|1
5	69446200	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=110	GT	1|1
5	69446321	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=121	GT	1|0
5	69447073	.	GA	G	0	Silver	metal=silver;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=682	GT	0/1
5	69447756	.	GA	G	0	Silver	metal=silver;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:3,LOOHD:3;dist2closest=300	GT	1|1
5	69448057	.	C	T	0	PASS	metal=platinum;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=3	GT	1|1
5	69448060	.	A	C	0	PASS	metal=platinum;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=3	GT	1|1
5	69448067	.	C	G	0	PASS	metal=platinum;isaac2=HD:5,LOOHD:5;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=7	GT	1|1
5	69448438	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=371	GT	1|1
5	69449878	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=112	GT	1|1
5	69449990	.	C	CA	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=112	GT	1|0
5	69451051	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=12	GT	1|1
5	69451063	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=12	GT	1|1
5	69451105	.	AT	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=42	GT	1|1
5	69452014	.	AAAGGAAGGAAGGAAGGAAGGAAGGAAGG	AAAGGAAGGAAGGAAGG,A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:16,LOOHD:16;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=121	GT	2|1
5	69452163	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=121	GT	1|0
5	69453266	.	T	TAA	0	Silver	metal=silver;isaac2=HD:5,LOOHD:5;bwa_freebayes=HD:5,LOOHD:5;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=.;dist2closest=175	GT	0/1
5	69453441	.	CA	C	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=175	GT	1|0
5	69454021	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=26	GT	1|0
5	69454047	.	GTTTATTTATTTATTTATTTA	G,GTTTATTTATTTATTTATTTATTTA	0	OverlapConflict	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=0	GT	./.
5	69454047	.	G	GTTTA	0	OverlapConflict	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=.;bwa_platypus=.;bwa_gatk3=.;dist2closest=0	GT	0|1
5	69454071	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=4	GT	1|0
5	69454224	.	G	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=5	GT	1|0
5	69454229	.	T	C	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=5	GT	1|0
5	69454236	.	G	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=7	GT	1|0
5	69454357	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=121	GT	1|0
5	69455119	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=762	GT	1|1
5	69459599	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=487	GT	0|1
5	69460086	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=487	GT	1|0
5	69461407	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1321	GT	1|0
5	69463002	.	T	TATA	0	Silver	metal=silver;isaac2=HD:7,LOOHD:7;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=HD:7,LOOHD:7;dist2closest=673	GT	0/1
5	69463675	.	G	T	0	Silver	metal=silver;isaac2=HD:4,LOOHD:4;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:6,LOOHD:6;bwa_gatk3=.;dist2closest=22	GT	1/1
5	69463697	.	G	T	0	Silver	metal=silver;isaac2=HD:4,LOOHD:4;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:9,LOOHD:9;bwa_gatk3=.;dist2closest=22	GT	0/1
5	69463741	.	G	T	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=22	GT	1|0
5	69463763	.	G	T	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=.;dist2closest=22	GT	1|0
5	69463817	.	G	T	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=.;dist2closest=16	GT	1|0
5	69463833	.	A	C	0	PASS	metal=platinum;isaac2=HD:8,LOOHD:8;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:8,LOOHD:7;dist2closest=16	GT	1|1
5	69470417	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=996	GT	1|0
5	69471413	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=636	GT	1|0
5	69472049	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=636	GT	1|0
5	69474223	.	AT	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=761	GT	1|0
5	69474985	.	CA	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=494	GT	1|0
5	69475480	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=32	GT	1|0
5	69475512	.	CT	C	0	Silver	metal=silver;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:3,LOOHD:3;dist2closest=32	GT	0/1
5	69478114	.	TG	T	0	PASS	metal=platinum;isaac2=HD:3,LOOHD:2;bwa_freebayes=HD:2,LOOHD:1;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2	GT	1|0
5	69478117	.	G	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=2	GT	1|0
5	69478127	.	AT	A	0	OverlapConflict	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=0	GT	1|0
5	69478128	.	T	A	0	OverlapConflict	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=HD:1,LOOHD:1;dist2closest=0	GT	1|0
5	69478360	.	CT	C	0	PASS	metal=platinum;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:0,LOOHD:0;dist2closest=85	GT	1|0
5	69478446	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=85	GT	1|0
5	69479238	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=634	GT	1|0
5	69479872	.	T	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:4,LOOHD:4;dist2closest=107	GT	0/1
5	69479979	.	G	C	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=107	GT	1|0
5	69480192	.	TCA	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=213	GT	1|0
5	69481045	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=34	GT	1|0
5	69481079	.	G	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=34	GT	1|0
5	69482053	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=974	GT	1|0
5	69483350	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=545	GT	0|1
5	69483895	.	C	CATT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=222	GT	1|1
5	69484117	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=222	GT	0|1
5	69486772	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=8	GT	1|0
5	69486780	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=8	GT	1|1
5	69488005	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1225	GT	1|0
5	69489471	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=621	GT	1|0
5	69490092	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=621	GT	1|1
5	69491017	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=771	GT	1|1
5	69491788	.	TAA	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=644	GT	1|1
5	69492434	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=552	GT	1|1
5	69492986	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=146	GT	1|1
5	69493132	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=146	GT	0|1
5	69494185	.	TTG	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2	GT	1|1
5	69494189	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2	GT	1|0
5	69496591	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=647	GT	1|1
5	69497238	.	AT	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=647	GT	1|1
5	69498107	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=36	GT	1|0
5	69498143	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=36	GT	1|1
5	69499671	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=320	GT	1|1
5	69499991	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=320	GT	1|1
5	69502291	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=23	GT	1|1
5	69502314	.	A	AT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=23	GT	1|1
5	69510600	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=990	GT	1|1
5	69511590	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=446	GT	1|1
5	69512036	.	A	AAG	0	PASS	metal=platinum;isaac2=HD:4,LOOHD:4;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=446	GT	1|1
5	69512674	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=638	GT	1|1
5	69518952	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=125	GT	1|1
5	69519077	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=125	GT	1|1
5	69520725	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1648	GT	1|1
5	69524521	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=781	GT	1|1
5	69525302	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=781	GT	1|1
5	69528411	.	A	ACATGGTGAC	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=72	GT	1|1
5	69528483	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=72	GT	1|1
5	69529059	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=576	GT	1|1
5	69530214	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1155	GT	1|1
5	69532469	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=505	GT	1|1
5	69532974	.	A	AT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=38	GT	1|1
5	69533012	.	T	TGTGTGTGC	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:0;bwa_freebayes=HD:7,LOOHD:6;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=27	GT	1|1
5	69533039	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:4,LOOHD:3;bwa_gatk3=HD:0,LOOHD:0;dist2closest=27	GT	1|1
5	69533108	.	C	CAT	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:2;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=69	GT	1|1
5	69533593	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=485	GT	1|1
5	69537452	.	T	C	0	Silver	metal=silver;isaac2=HD:10,LOOHD:9;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:4,LOOHD:3;dist2closest=326	GT	1/1
5	69537778	.	A	AAC	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:4,LOOHD:3;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:3,LOOHD:3;dist2closest=231	GT	1/1
5	69538009	.	CT	C	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:4,LOOHD:4;bwa_gatk3=HD:1,LOOHD:1;dist2closest=231	GT	1|1
5	69548462	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=704	GT	1|1
5	69549166	.	TA	T	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:0,LOOHD:0;dist2closest=57	GT	1|1
5	69549224	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=57	GT	1|1
5	69555236	.	AGT	A	0	Silver	metal=silver;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:1,LOOHD:1;dist2closest=2812	GT	1|1
5	69558050	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=163	GT	1|1
5	69558213	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=163	GT	1|1
5	69560225	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=64	GT	1|1
5	69560289	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=64	GT	1|1
5	69566538	.	G	T	0	Silver	metal=silver;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:5,LOOHD:3;bwa_platypus=.;bwa_gatk3=HD:3,LOOHD:3;dist2closest=2267	GT	1/1
5	69568805	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:4,LOOHD:4;bwa_gatk3=HD:2,LOOHD:2;dist2closest=2267	GT	1|1
5	69572195	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=950	GT	0|1
5	69573145	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=HD:-1,LOOHD:-1;dist2closest=950	GT	1|1
5	69586732	.	AC	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:4,LOOHD:4;dist2closest=4725	GT	0/1
5	69591458	.	C	CT	0	Silver	metal=silver;isaac2=HD:4,LOOHD:3;bwa_freebayes=HD:11,LOOHD:11;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:1,LOOHD:1;dist2closest=2978	GT	1/1
5	69594436	.	T	TAC,TACAC	0	Silver	metal=silver;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:2,LOOHD:2;dist2closest=1628	GT	1/2
5	69596064	.	A	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=.;dist2closest=1628	GT	0/1
5	69599743	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:5,LOOHD:5;bwa_platypus=HD:10,LOOHD:10;bwa_gatk3=HD:6,LOOHD:6;dist2closest=2863	GT	1/1
5	69602606	.	A	T	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:3,LOOHD:3;dist2closest=135	GT	1/1
5	69602741	.	T	C	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=135	GT	1|1
5	69603214	.	C	T	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=473	GT	0|1
5	69612445	.	TATC	T	0	Silver	metal=silver;isaac2=HD:3,LOOHD:2;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:6,LOOHD:6;bwa_gatk3=HD:3,LOOHD:2;dist2closest=9231	GT	0/1
5	69621935	.	T	A	0	Silver	metal=silver;isaac2=HD:6,LOOHD:6;bwa_freebayes=HD:5,LOOHD:5;bwa_platypus=HD:10,LOOHD:10;bwa_gatk3=HD:10,LOOHD:10;dist2closest=1819	GT	1/1
5	69623754	.	AT	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:5,LOOHD:4;dist2closest=852	GT	1/1
5	69624607	.	C	T	0	Silver	metal=silver;isaac2=HD:6,LOOHD:6;bwa_freebayes=HD:7,LOOHD:7;bwa_platypus=HD:9,LOOHD:9;bwa_gatk3=HD:5,LOOHD:5;dist2closest=852	GT	0/1
5	69627588	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=622	GT	1|1
5	69628210	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=622	GT	0|1
5	69634245	.	G	C	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:5,LOOHD:4;bwa_gatk3=HD:4,LOOHD:4;dist2closest=6035	GT	0/1
5	69649946	.	C	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:4,LOOHD:4;bwa_gatk3=HD:4,LOOHD:4;dist2closest=15701	GT	1/1
5	69671474	.	T	C	0	Silver	metal=silver;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:0;bwa_gatk3=HD:2,LOOHD:1;dist2closest=21528	GT	0/1
5	69767421	.	A	G	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1151	GT	1|1
5	69768572	.	A	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:8,LOOHD:8;bwa_gatk3=HD:4,LOOHD:4;dist2closest=1151	GT	1/1
5	69780719	.	C	G	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=1959	GT	1/1
5	69782678	.	A	G	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=1056	GT	1/1
5	69783734	.	A	C	0	Silver	metal=silver;isaac2=HD:4,LOOHD:4;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=1056	GT	1/1
5	69785690	.	T	G	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1956	GT	0|1
5	69789478	.	G	A	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:0,LOOHD:0;dist2closest=3788	GT	1|1
5	69818329	.	TACACAC	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=HD:5,LOOHD:5;dist2closest=4173	GT	1/1
5	69822508	.	T	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:3,LOOHD:3;dist2closest=4173	GT	0/1
5	69828948	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:4,LOOHD:4;dist2closest=6440	GT	1/1
5	69913800	.	G	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=1727	GT	0/1
5	69915527	.	A	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:6,LOOHD:6;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=.;dist2closest=1727	GT	0/1
5	69952543	.	C	T	0	Silver	metal=silver;isaac2=HD:6,LOOHD:5;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=8705	GT	1/1
5	69961248	.	G	GT	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:2,LOOHD:1;bwa_gatk3=HD:3,LOOHD:3;dist2closest=8705	GT	0/1
5	69981063	.	T	G	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=156	GT	1|1
5	69981219	.	A	G	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=156	GT	1|1
5	69984535	.	T	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=3316	GT	1|0
5	69995131	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=3798	GT	1|1
5	69998929	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=3798	GT	1|1
5	70002761	.	GGAGA	G	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:0;bwa_gatk3=HD:1,LOOHD:0;dist2closest=3832	GT	0/1
5	70009930	.	A	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:3,LOOHD:2;bwa_gatk3=HD:4,LOOHD:4;dist2closest=5432	GT	0/1
5	70015362	.	T	TAA	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:5,LOOHD:5;bwa_platypus=HD:2,LOOHD:1;bwa_gatk3=HD:3,LOOHD:3;dist2closest=5432	GT	0/1
5	70029168	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=6196	GT	1|1
5	70035364	.	A	AATT	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:2,LOOHD:1;dist2closest=6196	GT	1|0
5	70044343	.	G	A	0	PASS	metal=platinum;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2651	GT	0|1
5	70046994	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=60	GT	0|1
5	70047054	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=60	GT	1|1
5	70047403	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=340	GT	1|1
5	70047743	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:0,LOOHD:0;dist2closest=340	GT	1|1
5	70071516	.	A	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=.;dist2closest=1228	GT	0/1
5	70072744	.	A	G	0	PASS	metal=platinum;isaac2=HD:5,LOOHD:5;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1228	GT	1|1
5	70076154	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1686	GT	1|1
5	70077840	.	A	G	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1552	GT	1|1
5	70079392	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=366	GT	1|1
5	70079758	.	C	CA	0	PASS	metal=platinum;isaac2=HD:5,LOOHD:5;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=366	GT	1|1
5	70088644	.	G	T	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=6895	GT	1|1
5	70095539	.	C	G	0	PASS	metal=platinum;isaac2=HD:3,LOOHD:2;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:0,LOOHD:0;dist2closest=6895	GT	1|1
5	70102499	.	C	T	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:1,LOOHD:1;dist2closest=323	GT	1|0
5	70102822	.	A	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=HD:4,LOOHD:3;dist2closest=323	GT	1/1
5	70104213	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=615	GT	1|1
5	70104828	.	A	G	0	PASS	metal=platinum;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:3,LOOHD:3;dist2closest=615	GT	0|1
5	70112626	.	G	A	0	Silver	metal=silver;isaac2=HD:3,LOOHD:2;bwa_freebayes=HD:3,LOOHD:2;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:2,LOOHD:2;dist2closest=266	GT	0/1
5	70112892	.	A	C	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:1,LOOHD:1;dist2closest=197	GT	0/1
5	70113089	.	G	C	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=52	GT	0|1
5	70113141	.	A	C	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=10	GT	0|1
5	70113151	.	ACT	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=10	GT	0|1
5	70113845	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:1,LOOHD:1;dist2closest=692	GT	0|1
5	70158689	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=.;bwa_gatk3=HD:3,LOOHD:3;dist2closest=4887	GT	0/1
5	70163576	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=4887	GT	1|1
5	70183147	.	C	G	0	Silver	metal=silver;isaac2=HD:4,LOOHD:2;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=321	GT	1/1
5	70183468	.	ATG	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:3,LOOHD:3;dist2closest=321	GT	1/1
5	70191796	.	C	T	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:2,LOOHD:2;dist2closest=8326	GT	1/1
5	70263606	.	A	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:3,LOOHD:3;dist2closest=249	GT	1|1
5	70263855	.	A	G	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:14,LOOHD:14;bwa_gatk3=HD:0,LOOHD:0;dist2closest=249	GT	1|1
5	70292744	.	A	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=202	GT	0/1
5	70292946	.	G	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2	GT	1|0
5	70292948	.	G	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=HD:2,LOOHD:2;dist2closest=2	GT	1|0
5	70308476	.	A	C	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=1226	GT	1|1
5	70309702	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:2,LOOHD:2;dist2closest=1226	GT	0/1
5	70311872	.	A	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=2170	GT	1/1
5	70317213	.	T	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:4,LOOHD:4;bwa_gatk3=.;dist2closest=5341	GT	0/1
5	70328886	.	G	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:5,LOOHD:5;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=.;dist2closest=1971	GT	1/1
5	70330857	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=HD:7,LOOHD:6;dist2closest=1971	GT	1/1
5	70337757	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=1113	GT	0|1
5	70338870	.	A	G	0	Silver	metal=silver;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=1113	GT	1|1
5	70366037	.	T	TA	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:3,LOOHD:2;dist2closest=11629	GT	1|0
5	70377666	.	C	T	0	Silver	metal=silver;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:4,LOOHD:4;dist2closest=1115	GT	1/1
5	70378781	.	G	A	0	Silver	metal=silver;isaac2=HD:4,LOOHD:4;bwa_freebayes=HD:4,LOOHD:3;bwa_platypus=HD:5,LOOHD:4;bwa_gatk3=HD:3,LOOHD:3;dist2closest=1115	GT	0/1
5	70401105	.	G	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=11363	GT	1|1
5	70412468	.	G	GT	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=11363	GT	1|1
5	70430628	.	G	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:3,LOOHD:3;dist2closest=1665	GT	0/1
5	70432293	.	T	C	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=1665	GT	0/1
5	70438998	.	C	A	0	Silver	metal=silver;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:2,LOOHD:2;dist2closest=122	GT	1|1
5	70439120	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=122	GT	1|1
5	70439879	.	A	G	0	PASS	metal=platinum;isaac2=HD:5,LOOHD:5;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=759	GT	1|1
5	70442547	.	TTTGGGAGACCGAGGCAGGTGGGTCACCTGAGG	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=138	GT	1|1
5	70442717	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=138	GT	1|1
5	70443003	.	GAT	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=179	GT	1|1
5	70443184	.	G	C	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=179	GT	1|1
5	70443445	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=261	GT	1|1
5	70446931	.	C	T	0	Silver	metal=silver;isaac2=HD:6,LOOHD:6;bwa_freebayes=HD:6,LOOHD:5;bwa_platypus=HD:6,LOOHD:6;bwa_gatk3=HD:6,LOOHD:6;dist2closest=2192	GT	0/1
5	70449123	.	G	C	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:6,LOOHD:4;dist2closest=2192	GT	1/1
5	70454867	.	A	G	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=170	GT	1|1
5	70455037	.	G	A	0	Silver	metal=silver;isaac2=HD:7,LOOHD:6;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:5,LOOHD:4;dist2closest=170	GT	0/1
5	70459269	.	G	A	0	Silver	metal=silver;isaac2=HD:6,LOOHD:5;bwa_freebayes=HD:5,LOOHD:5;bwa_platypus=HD:4,LOOHD:4;bwa_gatk3=HD:6,LOOHD:6;dist2closest=4232	GT	1/1
5	70485297	.	A	C	0	PASS	metal=platinum;isaac2=HD:8,LOOHD:7;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2951	GT	1|1
5	70488248	.	G	C	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:2,LOOHD:2;dist2closest=6	GT	1|1
5	70488254	.	A	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:3,LOOHD:3;dist2closest=6	GT	0/1
5	70488577	.	A	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=HD:3,LOOHD:3;dist2closest=1	GT	1/1
5	70488578	.	A	C	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=HD:3,LOOHD:3;dist2closest=1	GT	1/1
5	70488592	.	C	T	0	Silver	metal=silver;isaac2=HD:6,LOOHD:4;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:2,LOOHD:2;dist2closest=14	GT	1/1
5	70489201	.	T	C	0	Silver	metal=silver;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=192	GT	1|1
5	70489393	.	C	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:6,LOOHD:6;bwa_gatk3=HD:6,LOOHD:6;dist2closest=192	GT	1/1
5	70494738	.	A	T	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=161	GT	1|1
5	70494899	.	G	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=159	GT	1|1
5	70495058	.	G	T	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:0,LOOHD:0;dist2closest=159	GT	1|1
5	70509069	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:4,LOOHD:4;dist2closest=62	GT	1/1
5	70509131	.	G	C	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=HD:3,LOOHD:3;dist2closest=62	GT	1/1
5	70510903	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=24	GT	1|1
5	70510927	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2	GT	1|1
5	70510929	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2	GT	1|1
5	70511318	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=74	GT	1|1
5	70511392	.	T	G	0	Silver	metal=silver;isaac2=HD:6,LOOHD:5;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=74	GT	1/1
5	70511999	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:2,LOOHD:2;dist2closest=607	GT	0/1
5	70513160	.	A	T	0	Silver	metal=silver;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:5,LOOHD:5;bwa_platypus=.;bwa_gatk3=.;dist2closest=1161	GT	1/1
5	70515199	.	G	C	0	Silver	metal=silver;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=219	GT	1/1
5	70515418	.	G	C	0	Silver	metal=silver;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:3,LOOHD:3;dist2closest=219	GT	0/1
5	70518583	.	G	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:5,LOOHD:5;bwa_platypus=HD:4,LOOHD:3;bwa_gatk3=HD:3,LOOHD:3;dist2closest=3165	GT	0/1
5	70521970	.	C	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=3387	GT	1|0
5	70530301	.	G	A	0	Silver	metal=silver;isaac2=HD:4,LOOHD:4;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=.;bwa_gatk3=.;dist2closest=8331	GT	0/1
5	70548403	.	A	T	0	Silver	metal=silver;isaac2=HD:5,LOOHD:5;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=16606	GT	1/1
5	70565009	.	G	C	0	Silver	metal=silver;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=HD:5,LOOHD:5;dist2closest=18	GT	0/1
5	70565027	.	G	C	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:7,LOOHD:7;bwa_gatk3=HD:5,LOOHD:5;dist2closest=18	GT	0/1
5	70586159	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=.;dist2closest=12542	GT	1/1
5	70598701	.	A	G	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:2,LOOHD:1;bwa_gatk3=HD:4,LOOHD:4;dist2closest=12542	GT	0/1
5	70629284	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=205	GT	1|1
5	70629489	.	AT	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:3,LOOHD:3;dist2closest=205	GT	1|1
5	70631000	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:2,LOOHD:1;dist2closest=1510	GT	1|1
5	70671994	.	T	C	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:2;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:3,LOOHD:3;dist2closest=14554	GT	0/1
5	70686548	.	A	C	0	PASS	metal=platinum;isaac2=HD:3,LOOHD:2;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=6525	GT	1|1
5	70693073	.	T	C	0	Silver	metal=silver;isaac2=HD:5,LOOHD:4;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:6,LOOHD:6;bwa_gatk3=HD:4,LOOHD:4;dist2closest=289	GT	0/1
5	70693362	.	G	A	0	Silver	metal=silver;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:1,LOOHD:0;bwa_gatk3=HD:2,LOOHD:1;dist2closest=76	GT	0/1
5	70693438	.	T	TACAC	0	Silver	metal=silver;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=76	GT	0/1
5	70717161	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:4,LOOHD:4;dist2closest=208	GT	1/1
5	70717369	.	T	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:3,LOOHD:2;bwa_gatk3=HD:3,LOOHD:3;dist2closest=208	GT	0/1
5	70776450	.	G	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=.;dist2closest=1966	GT	0/1
5	70778416	.	T	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:6,LOOHD:6;bwa_gatk3=HD:3,LOOHD:3;dist2closest=1966	GT	0/1
5	70781854	.	G	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:0;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=HD:3,LOOHD:3;dist2closest=3438	GT	0/1
5	70788489	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:3,LOOHD:2;dist2closest=2002	GT	0/1
5	70790491	.	G	A	0	Silver	metal=silver;isaac2=HD:7,LOOHD:7;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:5,LOOHD:4;bwa_gatk3=HD:2,LOOHD:2;dist2closest=1805	GT	1/1
5	70792296	.	A	AGT	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:3,LOOHD:2;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:1,LOOHD:1;dist2closest=1805	GT	1|0
5	70794241	.	G	C	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=476	GT	1|1
5	70794717	.	A	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:2,LOOHD:1;bwa_gatk3=HD:3,LOOHD:3;dist2closest=476	GT	0/1
5	70795213	.	G	T	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:4,LOOHD:3;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=496	GT	1/1
5	70797843	.	T	TC	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2630	GT	1|1
5	70809565	.	A	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:6,LOOHD:6;bwa_gatk3=HD:7,LOOHD:6;dist2closest=1029	GT	1/1
5	70810594	.	G	A	0	PASS	metal=platinum;isaac2=HD:14,LOOHD:14;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1029	GT	1|1
5	70823919	.	TAA	T	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=12	GT	1|1
5	70823933	.	G	A	0	PASS	metal=platinum;isaac2=HD:3,LOOHD:2;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=12	GT	1|1
5	70868734	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=4085	GT	1|1
5	70872819	.	AAAT	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=129	GT	0|1
5	70872951	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=129	GT	1|1
5	70874021	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1070	GT	1|0
5	70884653	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=355	GT	1|1
5	70885008	.	A	G	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=355	GT	1/1
5	70913097	.	G	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=28089	GT	1|1
5	70950340	.	T	C	0	PASS	metal=platinum;isaac2=HD:4,LOOHD:2;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=8	GT	1|1
5	70950348	.	C	T	0	PASS	metal=platinum;isaac2=HD:5,LOOHD:4;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=8	GT	1|1
5	70952281	.	C	CA	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=960	GT	1|1
5	70953241	.	G	C	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=960	GT	1/1
5	70954813	.	A	G	0	PASS	metal=platinum;isaac2=HD:7,LOOHD:7;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1572	GT	1|1
5	70956923	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:1,LOOHD:1;dist2closest=2110	GT	1|1
5	70959642	.	GT	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:6,LOOHD:6;bwa_gatk3=HD:5,LOOHD:5;dist2closest=310	GT	1/1
5	70959953	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=310	GT	1|1
5	70960373	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=75	GT	1|1
5	70960448	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=75	GT	1|1
5	70971440	.	G	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:2,LOOHD:2;dist2closest=6509	GT	1/1
5	70977949	.	C	T	0	Silver	metal=silver;isaac2=HD:5,LOOHD:4;bwa_freebayes=HD:3,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=3311	GT	0/1
5	70981260	.	C	T	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=3311	GT	1|1
5	70989080	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:3,LOOHD:3;dist2closest=7631	GT	0/1
5	70996711	.	A	G	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=5520	GT	1|1
5	71002231	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:5,LOOHD:3;dist2closest=255	GT	1/1
5	71002486	.	A	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:1,LOOHD:1;dist2closest=255	GT	0/1
5	71008133	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:4,LOOHD:4;dist2closest=687	GT	1|1
5	71008820	.	G	A	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:7,LOOHD:7;dist2closest=687	GT	1|1
5	71009726	.	A	T	0	Silver	metal=silver;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=906	GT	1/1
5	71011637	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=787	GT	1|1
5	71012424	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=11	GT	1|1
5	71012435	.	C	T	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=11	GT	0/1
5	71013639	.	TA	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:6,LOOHD:6;bwa_platypus=HD:4,LOOHD:3;bwa_gatk3=HD:6,LOOHD:6;dist2closest=1204	GT	1/1
5	71017603	.	A	C	0	Silver	metal=silver;isaac2=HD:6,LOOHD:6;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:3,LOOHD:3;dist2closest=3963	GT	1|1
5	71039405	.	C	A	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:2,LOOHD:2;dist2closest=6730	GT	0/1
5	71046135	.	T	A	0	Silver	metal=silver;isaac2=HD:3,LOOHD:2;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=260	GT	1/1
5	71046395	.	C	T	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=156	GT	0|1
5	71046551	.	T	C	0	Silver	metal=silver;isaac2=HD:5,LOOHD:5;bwa_freebayes=HD:5,LOOHD:5;bwa_platypus=.;bwa_gatk3=.;dist2closest=156	GT	0/1
5	71061364	.	A	G	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=7743	GT	1|0
5	71069107	.	G	C	0	Silver	metal=silver;isaac2=HD:9,LOOHD:9;bwa_freebayes=HD:6,LOOHD:6;bwa_platypus=HD:7,LOOHD:7;bwa_gatk3=HD:5,LOOHD:5;dist2closest=64	GT	1/1
5	71069171	.	A	G	0	PASS	metal=platinum;isaac2=HD:4,LOOHD:4;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=64	GT	1|1
5	71089847	.	A	G	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2940	GT	0|1
5	71092787	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2940	GT	1|1
5	71096635	.	A	G	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=1631	GT	1/1
5	71098266	.	A	G	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=323	GT	0|1
5	71098589	.	A	C	0	Silver	metal=silver;isaac2=HD:3,LOOHD:2;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:6,LOOHD:5;bwa_gatk3=HD:4,LOOHD:4;dist2closest=323	GT	0/1
5	71103684	.	C	T	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:15,LOOHD:15;bwa_gatk3=HD:9,LOOHD:8;dist2closest=949	GT	1/1
5	71104633	.	G	C	0	Silver	metal=silver;isaac2=HD:3,LOOHD:2;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:3,LOOHD:2;dist2closest=949	GT	0/1
5	71106006	.	C	T	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=1373	GT	0|1
5	71107702	.	T	C	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:6,LOOHD:5;bwa_platypus=HD:4,LOOHD:4;bwa_gatk3=HD:6,LOOHD:5;dist2closest=1696	GT	1/1
5	71116274	.	CA	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:1,LOOHD:1;dist2closest=33	GT	0|1
5	71116308	.	G	GA	0	Silver	metal=silver;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=33	GT	0/1
5	71116503	.	G	A	0	Silver	metal=silver;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=14	GT	0/1
5	71116517	.	C	T	0	Silver	metal=silver;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=14	GT	0/1
5	71125442	.	T	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=3	GT	0/1
5	71125445	.	T	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=3	GT	0/1
5	71131851	.	T	G	0	Silver	metal=silver;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:1,LOOHD:1;dist2closest=6406	GT	1|1
5	71139190	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=314	GT	1|1
5	71139504	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=314	GT	0|1
5	71148859	.	G	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:2,LOOHD:1;dist2closest=2160	GT	0/1
5	71151019	.	C	T	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1350	GT	1|0
5	71152369	.	G	T	0	Silver	metal=silver;isaac2=HD:5,LOOHD:5;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=HD:4,LOOHD:4;dist2closest=708	GT	0/1
5	71153077	.	G	GA	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:3,LOOHD:3;dist2closest=708	GT	1/1
5	71157570	.	A	AAATAATAAT	0	Silver	metal=silver;isaac2=HD:8,LOOHD:8;bwa_freebayes=HD:5,LOOHD:5;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:1,LOOHD:1;dist2closest=581	GT	1/1
5	71158151	.	T	C	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=581	GT	0/1
5	71159016	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:1,LOOHD:1;dist2closest=865	GT	0/1
5	71165505	.	AG	A	0	Silver	metal=silver;isaac2=HD:7,LOOHD:6;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:2,LOOHD:1;bwa_gatk3=HD:3,LOOHD:3;dist2closest=145	GT	0/1
5	71165651	.	T	C	0	Silver	metal=silver;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:3,LOOHD:2;bwa_gatk3=HD:3,LOOHD:2;dist2closest=145	GT	0/1
5	71168270	.	C	CTGTT	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:3,LOOHD:3;dist2closest=6	GT	0/1
5	71168276	.	A	G	0	Silver	metal=silver;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:3,LOOHD:3;dist2closest=6	GT	0/1
5	71170083	.	T	TA	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:0;bwa_gatk3=HD:1,LOOHD:0;dist2closest=1807	GT	1|0
5	71180899	.	T	G	0	Silver	metal=silver;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=.;dist2closest=1846	GT	1/1
5	71182745	.	G	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=482	GT	1/1
5	71183227	.	T	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:3,LOOHD:3;dist2closest=482	GT	0/1
5	71184029	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:9,LOOHD:9;bwa_gatk3=HD:6,LOOHD:6;dist2closest=802	GT	1/1
5	71193377	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=9348	GT	1|1
5	71207912	.	C	A	0	Silver	metal=silver;isaac2=HD:14,LOOHD:14;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=1283	GT	0/1
5	71209195	.	T	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:1;bwa_gatk3=HD:3,LOOHD:3;dist2closest=1283	GT	0/1
5	71231829	.	G	A	0	Silver	metal=silver;isaac2=HD:5,LOOHD:5;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:2,LOOHD:1;bwa_gatk3=HD:4,LOOHD:4;dist2closest=22634	GT	0/1
5	71265433	.	T	C	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=.;dist2closest=6847	GT	0/1
5	71272280	.	C	G	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=143	GT	1|1
5	71272423	.	A	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=60	GT	1|1
5	71272483	.	C	G	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=60	GT	1|1
5	71272794	.	T	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:4,LOOHD:4;bwa_gatk3=HD:4,LOOHD:4;dist2closest=311	GT	1/1
5	71282547	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=4383	GT	1|1
5	71286930	.	G	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=.;dist2closest=4383	GT	0/1
5	71300099	.	G	T	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2119	GT	1|1
5	71302218	.	T	G	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=16	GT	1|1
5	71302234	.	C	T	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=16	GT	1|1
5	71314430	.	A	G	0	Silver	metal=silver;isaac2=HD:6,LOOHD:6;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:1,LOOHD:1;dist2closest=8104	GT	1|1
5	71322534	.	G	A	0	Silver	metal=silver;isaac2=HD:5,LOOHD:5;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:4,LOOHD:4;dist2closest=2815	GT	1/1
5	71325349	.	C	G	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=340	GT	1|1
5	71325689	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=340	GT	1|1
5	71326118	.	A	G	0	PASS	metal=platinum;isaac2=HD:4,LOOHD:4;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=429	GT	1|1
5	71326987	.	G	T	0	Silver	metal=silver;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=71	GT	1/1
5	71327058	.	A	C	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:4,LOOHD:4;bwa_gatk3=.;dist2closest=71	GT	0/1
5	71327659	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=601	GT	1|1
5	71331254	.	CA	C	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=.;dist2closest=288	GT	0/1
5	71331543	.	C	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:4,LOOHD:4;bwa_gatk3=HD:2,LOOHD:2;dist2closest=203	GT	0/1
5	71331746	.	G	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=HD:5,LOOHD:5;dist2closest=203	GT	0/1
5	71343911	.	T	C	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:3,LOOHD:2;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:2,LOOHD:1;dist2closest=515	GT	0|1
5	71344426	.	G	A	0	Silver	metal=silver;isaac2=HD:5,LOOHD:5;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=338	GT	1/1
5	71344764	.	G	A	0	Silver	metal=silver;isaac2=HD:10,LOOHD:10;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:1,LOOHD:1;dist2closest=338	GT	1|1
5	71354384	.	G	A	0	Silver	metal=silver;isaac2=HD:8,LOOHD:8;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=6483	GT	0/1
5	71360867	.	G	GA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2513	GT	1|1
5	71363380	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1649	GT	1|1
5	71365029	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1649	GT	1|1
5	71381017	.	TAA	TA,T	0	PASS	metal=platinum;isaac2=HD:7,LOOHD:6;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:1,LOOHD:1;dist2closest=2934	GT	0|1
5	71383953	.	AAC	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=14	GT	0|1
5	71383969	.	C	T	0	OverlapConflict	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=0	GT	0|1
5	71383969	.	C	CAT	0	OverlapConflict	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=0	GT	0|1
5	71385390	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1421	GT	1|0
5	71387819	.	T	TAC	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=193	GT	0|1
5	71388012	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=156	GT	1|0
5	71388168	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=156	GT	0|1
5	71393625	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1362	GT	1|1
5	71394987	.	C	CATA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=110	GT	1|0
5	71395097	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1	GT	1|1
5	71395098	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1	GT	0|1
5	71395444	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=346	GT	1|1
5	71396247	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=106	GT	1|1
5	71396353	.	C	CT	0	PASS	metal=platinum;isaac2=HD:4,LOOHD:4;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=106	GT	1|1
5	71396636	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=272	GT	1|1
5	71396908	.	ACT	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=272	GT	1|0
5	71397541	.	AATAC	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=631	GT	1|1
5	71398878	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=53	GT	1|1
5	71398931	.	C	CACACAT	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:1,LOOHD:1;dist2closest=53	GT	0|1
5	71399589	.	C	CT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=335	GT	1|1
5	71399924	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=335	GT	1|1
5	71401417	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1248	GT	1|0
5	71402665	.	C	CT	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=738	GT	1|1
5	71403403	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=58	GT	0|1
5	71403461	.	GC	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=58	GT	1|1
5	71405339	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=19	GT	0|1
5	71405358	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=19	GT	1|0
5	71406163	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=60	GT	1|1
5	71406223	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=60	GT	1|0
5	71408159	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=91	GT	1|0
5	71408250	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=91	GT	1|0
5	71408532	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=282	GT	0|1
5	71408939	.	GTA	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=407	GT	1|1
5	71409443	.	G	T	0	Silver	metal=silver;isaac2=HD:7,LOOHD:7;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=.;bwa_gatk3=HD:3,LOOHD:3;dist2closest=502	GT	1/1
5	71411585	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=754	GT	1|1
5	71412339	.	A	C	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=124	GT	1|1
5	71412463	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=124	GT	1|1
5	71413632	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=334	GT	1|0
5	71413966	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=7	GT	0|1
5	71413973	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=7	GT	0|1
5	71414620	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=101	GT	1|1
5	71414721	.	C	CT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=101	GT	1|1
5	71416450	.	T	C	0	Silver	metal=silver;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:3,LOOHD:2;bwa_gatk3=HD:3,LOOHD:3;dist2closest=358	GT	0/1
5	71416808	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=98	GT	1|1
5	71416906	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=98	GT	1|1
5	71417484	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=251	GT	1|0
5	71417735	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=251	GT	1|1
5	71418083	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=348	GT	1|0
5	71418587	.	G	GT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=214	GT	0|1
5	71418801	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=214	GT	1|0
5	71420728	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=331	GT	1|0
5	71421059	.	G	GA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:3,LOOHD:2;bwa_gatk3=HD:2,LOOHD:2;dist2closest=281	GT	1|0
5	71421340	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=281	GT	1|0
5	71422076	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=736	GT	0|1
5	71423739	.	ATCTG	A	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=12	GT	1|0
5	71423755	.	G	GTCTA	0	PASS	metal=platinum;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=12	GT	0|1
5	71425189	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=587	GT	1|0
5	71425776	.	TG	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=224	GT	1|0
5	71426001	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=110	GT	0|1
5	71426111	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=110	GT	1|0
5	71427046	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=500	GT	1|0
5	71427546	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=500	GT	1|1
5	71429179	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=643	GT	1|0
5	71429822	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=343	GT	1|0
5	71430165	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=343	GT	1|1
5	71432117	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=901	GT	0|1
5	71433018	.	C	T	0	Silver	metal=silver;isaac2=HD:3,LOOHD:2;bwa_freebayes=.;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:2,LOOHD:2;dist2closest=901	GT	0/1
5	71434907	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=768	GT	1|0
5	71435675	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=242	GT	0|1
5	71435917	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=242	GT	0|1
5	71436341	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=44	GT	1|0
5	71436385	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=44	GT	0|1
5	71436722	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=337	GT	1|0
5	71437336	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=233	GT	1|0
5	71437569	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=233	GT	1|0
5	71438538	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=969	GT	1|1
5	71439874	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=309	GT	0|1
5	71440183	.	CA	C	0	Silver	metal=silver;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:5,LOOHD:5;bwa_platypus=HD:4,LOOHD:4;bwa_gatk3=HD:2,LOOHD:2;dist2closest=94	GT	0/1
5	71440278	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=21	GT	0|1
5	71440299	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=21	GT	0|1
5	71440439	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=140	GT	1|0
5	71441919	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=504	GT	0|1
5	71442423	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=504	GT	1|1
5	71443485	.	A	G	0	Silver	metal=silver;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=HD:2,LOOHD:2;dist2closest=15	GT	0/1
5	71443500	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=3	GT	1|0
5	71443503	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=3	GT	0|1
5	71443998	.	A	AAG	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:7,LOOHD:6;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=495	GT	1|0
5	71444846	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=519	GT	1|1
5	71445365	.	CT	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=519	GT	1|1
5	71447290	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=773	GT	1|0
5	71448063	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=135	GT	1|1
5	71448198	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=135	GT	0|1
5	71448831	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=378	GT	0|1
5	71449209	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=337	GT	1|1
5	71449546	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=104	GT	1|0
5	71449650	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=104	GT	1|0
5	71449883	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=233	GT	1|1
5	71450718	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=217	GT	1|0
5	71450935	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=52	GT	1|1
5	71450987	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=52	GT	1|0
5	71451295	.	TAAAA	TA,TAA,T	0	PASS	metal=platinum;isaac2=HD:-1,LOOHD:-1;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=308	GT	2|1
5	71451743	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=444	GT	0|1
5	71452338	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=356	GT	1|0
5	71452694	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=59	GT	0|1
5	71452753	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=59	GT	1|1
5	71453357	.	C	CTT	0	Silver	metal=silver;isaac2=HD:4,LOOHD:4;bwa_freebayes=.;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=.;dist2closest=561	GT	1/1
5	71453918	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=443	GT	0|1
5	71454361	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=409	GT	1|0
5	71454770	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=54	GT	0|1
5	71454824	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=54	GT	1|0
5	71455991	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=950	GT	1|1
5	71456941	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=950	GT	0|1
5	71458107	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=228	GT	0|1
5	71458335	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=228	GT	1|1
5	71460026	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=214	GT	0|1
5	71460240	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=214	GT	1|1
5	71460875	.	T	TA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=635	GT	0|1
5	71462272	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1221	GT	1|0
5	71463493	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=336	GT	1|0
5	71463829	.	TAAA	TA,TAA,T	0	PASS	metal=platinum;isaac2=HD:3,LOOHD:3;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=336	GT	2|1
5	71464715	.	G	GTTT	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:2,LOOHD:1;dist2closest=883	GT	1|0
5	71466364	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=256	GT	1|0
5	71466620	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=256	GT	0|1
5	71467062	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=46	GT	1|1
5	71467108	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=17	GT	1|1
5	71467125	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=17	GT	0|1
5	71467232	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=29	GT	1|1
5	71467261	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=29	GT	0|1
5	71467634	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=373	GT	0|1
5	71468258	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=349	GT	0|1
5	71468607	.	C	CT	0	Silver	metal=silver;isaac2=HD:4,LOOHD:4;bwa_freebayes=HD:5,LOOHD:5;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:3,LOOHD:3;dist2closest=310	GT	1/1
5	71468917	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=66	GT	0|1
5	71468983	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=66	GT	0|1
5	71469054	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=71	GT	1|0
5	71470913	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=261	GT	1|0
5	71471174	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=115	GT	0|1
5	71471289	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=115	GT	0|1
5	71471442	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=153	GT	1|1
5	71472876	.	TTC	T	0	Silver	metal=silver;isaac2=HD:2,LOOHD:1;bwa_freebayes=.;bwa_platypus=HD:6,LOOHD:6;bwa_gatk3=HD:4,LOOHD:4;dist2closest=241	GT	0/1
5	71473119	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=241	GT	0|1
5	71473834	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=156	GT	0|1
5	71473990	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=90	GT	0|1
5	71474080	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=90	GT	0|1
5	71474846	.	G	GA	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=225	GT	1|0
5	71475071	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=225	GT	0|1
5	71475492	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=374	GT	0|1
5	71475866	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=374	GT	1|0
5	71476550	.	C	CT	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=684	GT	1|1
5	71477361	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=256	GT	0|1
5	71477617	.	A	ATTTTTTCTTTT	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=256	GT	0|1
5	71478198	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=64	GT	0|1
5	71478262	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=64	GT	0|1
5	71478840	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=578	GT	1|1
5	71479844	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=51	GT	0|1
5	71479895	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=36	GT	0|1
5	71479931	.	TCC	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=36	GT	0|1
5	71479975	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=42	GT	0|1
5	71480148	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=173	GT	0|1
5	71480570	.	AT	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:0,LOOHD:0;dist2closest=422	GT	1|1
5	71481434	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=863	GT	0|1
5	71482633	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=577	GT	0|1
5	71483210	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=577	GT	0|1
5	71484393	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=35	GT	1|1
5	71484428	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=35	GT	1|0
5	71484762	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=41	GT	1|1
5	71484803	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=41	GT	0|1
5	71485591	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=336	GT	0|1
5	71485927	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=336	GT	1|1
5	71490899	.	G	GAC	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=860	GT	0|1
5	71491759	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=114	GT	1|1
5	71491873	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=114	GT	0|1
5	71492802	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=118	GT	0|1
5	71492920	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=118	GT	1|0
5	71493766	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=273	GT	1|0
5	71494039	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=273	GT	0|1
5	71494360	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=83	GT	0|1
5	71494443	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=83	GT	0|1
5	71495183	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=740	GT	1|0
5	71496714	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1030	GT	0|1
5	71497744	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=410	GT	1|0
5	71498154	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=410	GT	0|1
5	71500334	.	TTTTTTTTTG	T	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=753	GT	1|0
5	71501096	.	CA	C	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=753	GT	0|1
5	71502189	.	CT	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=124	GT	1|0
5	71502314	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=107	GT	0|1
5	71502421	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=34	GT	1|0
5	71502455	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=34	GT	0|1
5	71503503	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=179	GT	0|1
5	71503682	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=179	GT	1|1
5	71504048	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=212	GT	0|1
5	71504260	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=12	GT	1|0
5	71504272	.	C	CA	0	PASS	metal=platinum;isaac2=HD:3,LOOHD:2;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:2,LOOHD:2;dist2closest=12	GT	0|1
5	71504452	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=180	GT	0|1
5	71504648	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=63	GT	1|0
5	71504711	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=63	GT	0|1
5	71505527	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=185	GT	1|1
5	71505712	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=185	GT	0|1
5	71506414	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=344	GT	0|1
5	71506758	.	TTA	TTATA,T	0	Silver	metal=silver;isaac2=HD:5,LOOHD:5;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=26	GT	1/2
5	71506786	.	AAC	A,AACACAC	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=26	GT	1|2
5	71506821	.	A	C	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=2	GT	1|0
5	71506823	.	A	C,ACACACC	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=2	GT	1|2
5	71507557	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=211	GT	0|1
5	71507768	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=211	GT	0|1
5	71509069	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=284	GT	0|1
5	71509353	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=92	GT	0|1
5	71509445	.	GC	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:2,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=4	GT	0|1
5	71509450	.	CT	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=4	GT	1|0
5	71510630	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=192	GT	0|1
5	71510822	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=62	GT	0|1
5	71510884	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=62	GT	1|1
5	71511131	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=58	GT	1|1
5	71511189	.	CT	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=56	GT	1|0
5	71511246	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=56	GT	1|0
5	71512164	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=918	GT	0|1
5	71513342	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=100	GT	0|1
5	71513442	.	GT	G	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=100	GT	0|1
5	71513755	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=58	GT	0|1
5	71513813	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=58	GT	0|1
5	71514221	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=408	GT	1|1
5	71515994	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1773	GT	0|1
5	71518101	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=171	GT	0|1
5	71518272	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=83	GT	1|0
5	71518355	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=83	GT	1|0
5	71519111	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=181	GT	1|1
5	71519292	.	AC	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=181	GT	1|0
5	71519622	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=329	GT	1|1
5	71521808	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=152	GT	0|1
5	71521960	.	C	CT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=152	GT	1|0
5	71522502	.	C	CA	0	PASS	metal=platinum;isaac2=HD:4,LOOHD:3;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=542	GT	0|1
5	71523050	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=359	GT	0|1
5	71523409	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=359	GT	0|1
5	71524540	.	C	CAAT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=52	GT	0|1
5	71524592	.	A	AT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=52	GT	0|1
5	71524644	.	AT	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=52	GT	0|1
5	71525007	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=238	GT	0|1
5	71525245	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1	GT	0|1
5	71525246	.	G	A	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1	GT	0|1
5	71525303	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=57	GT	0|1
5	71525445	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:1,LOOHD:1;dist2closest=1	GT	1|1
5	71525446	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:1,LOOHD:1;dist2closest=1	GT	1|1
5	71525565	.	T	C	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:15,LOOHD:14;dist2closest=34	GT	1|1
5	71525599	.	A	C	0	Silver	metal=silver;isaac2=HD:10,LOOHD:9;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:5,LOOHD:5;bwa_gatk3=HD:16,LOOHD:15;dist2closest=20	GT	1/1
5	71525619	.	C	T	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=20	GT	0|1
5	71525680	.	C	CG	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:2,LOOHD:2;dist2closest=61	GT	0|1
5	71526277	.	T	TGGCA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=39	GT	0|1
5	71526316	.	C	CT	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=39	GT	0|1
5	71527202	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=46	GT	1|1
5	71527248	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=46	GT	0|1
5	71530052	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=806	GT	0|1
5	71530858	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=110	GT	0|1
5	71530968	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=110	GT	0|1
5	71532590	.	TTTTG	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=459	GT	1|0
5	71533053	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=415	GT	0|1
5	71533468	.	A	AT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=.;bwa_platypus=.;bwa_gatk3=.;dist2closest=415	GT	1|0
5	71534224	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=272	GT	0|1
5	71534496	.	G	GT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=272	GT	1|0
5	71535173	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=641	GT	1|1
5	71535814	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=641	GT	1|0
5	71537513	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=172	GT	0|1
5	71537685	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=172	GT	0|1
5	71538250	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=405	GT	0|1
5	71538655	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=221	GT	0|1
5	71538876	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=130	GT	0|1
5	71539006	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=93	GT	0|1
5	71539099	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=93	GT	1|0
5	71540180	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=99	GT	1|1
5	71540279	.	CTTAT	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:2,LOOHD:2;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=99	GT	0|1
5	71540576	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=293	GT	1|1
5	71541131	.	G	GCTGT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=337	GT	1|1
5	71541468	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=337	GT	1|1
5	71542565	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=136	GT	0|1
5	71542701	.	C	CAT	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=136	GT	0|1
5	71543731	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=120	GT	1|1
5	71543851	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=120	GT	1|1
5	71544169	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=237	GT	1|1
5	71544406	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=200	GT	0|1
5	71544606	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=174	GT	0|1
5	71544780	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=174	GT	1|0
5	71545840	.	T	TA	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=409	GT	0|1
5	71546249	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=409	GT	0|1
5	71546850	.	CT	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=151	GT	0|1
5	71547002	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=151	GT	0|1
5	71547155	.	C	CT	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=9	GT	1|0
5	71547164	.	TA	T	0	OverlapConflict	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=0	GT	1|0
5	71547165	.	A	T	0	OverlapConflict	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=0	GT	1|0
5	71547279	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=114	GT	0|1
5	71548164	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=885	GT	0|1
5	71549986	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=390	GT	0|1
5	71550376	.	GA	G	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=8	GT	0|1
5	71550385	.	A	G	0	OverlapConflict	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=0	GT	0|1
5	71550385	.	A	AG	0	OverlapConflict	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=0	GT	0|1
5	71550457	.	TA	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=8	GT	0|1
5	71550466	.	AT	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=8	GT	1|0
5	71550865	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=232	GT	0|1
5	71551097	.	GTTTA	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=129	GT	1|1
5	71551230	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=129	GT	0|1
5	71551404	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=174	GT	0|1
5	71551996	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=40	GT	1|1
5	71552036	.	G	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=.;dist2closest=40	GT	0|1
5	71552126	.	G	T	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:3,LOOHD:3;bwa_platypus=HD:3,LOOHD:3;bwa_gatk3=.;dist2closest=90	GT	0/1
5	71552422	.	G	A	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:4,LOOHD:4;bwa_platypus=HD:4,LOOHD:3;bwa_gatk3=HD:4,LOOHD:4;dist2closest=170	GT	0/1
5	71552592	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=87	GT	1|0
5	71552679	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=8	GT	0|1
5	71552687	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=8	GT	1|0
5	71552801	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=15	GT	1|0
5	71552816	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=15	GT	1|0
5	71552856	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=23	GT	0|1
5	71552879	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=23	GT	1|1
5	71552955	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=76	GT	0|1
5	71553194	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=239	GT	0|1
5	71553639	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=80	GT	0|1
5	71553719	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=69	GT	1|1
5	71553788	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=69	GT	0|1
5	71554303	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=463	GT	0|1
5	71554766	.	A	AT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=142	GT	0|1
5	71554908	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=142	GT	0|1
5	71555261	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=206	GT	0|1
5	71555467	.	TTCTC	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=157	GT	1|0
5	71555628	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=77	GT	0|1
5	71555705	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=77	GT	1|1
5	71555943	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1	GT	0|1
5	71555944	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1	GT	0|1
5	71556087	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=143	GT	1|0
5	71556784	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=411	GT	0|1
5	71557195	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=40	GT	1|1
5	71557235	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=40	GT	0|1
5	71557424	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=5	GT	1|1
5	71557429	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=5	GT	0|1
5	71557654	.	GTAGAGACAGAGTTTGTATTTTTTGTAGAGACCATGTTGTCCAGCCTGGTCTTGAATGTATTTTTGTA	G	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=.;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=225	GT	0|1
5	71558016	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=153	GT	0|1
5	71558169	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=103	GT	1|0
5	71558272	.	TG	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=103	GT	1|1
5	71558690	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=142	GT	0|1
5	71558832	.	CA	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=142	GT	0|1
5	71559157	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=324	GT	0|1
5	71560551	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=285	GT	0|1
5	71560836	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=285	GT	0|1
5	71561507	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=59	GT	0|1
5	71561566	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=59	GT	1|1
5	71562367	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=801	GT	1|0
5	71563363	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=966	GT	0|1
5	71564329	.	A	ATTC	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=28	GT	1|1
5	71564357	.	T	TTTAA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=28	GT	0|1
5	71564666	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=309	GT	0|1
5	71566232	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=815	GT	0|1
5	71567047	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=815	GT	0|1
5	71568265	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=206	GT	0|1
5	71568471	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=162	GT	1|1
5	71568633	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=94	GT	1|0
5	71568727	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=64	GT	1|1
5	71568791	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=6	GT	0|1
5	71568797	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=.;bwa_gatk3=HD:0,LOOHD:0;dist2closest=6	GT	1|1
5	71569489	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=282	GT	1|0
5	71569771	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=282	GT	0|1
5	71570772	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=80	GT	0|1
5	71570852	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=80	GT	1|0
5	71571367	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=118	GT	0|1
5	71571485	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=118	GT	0|1
5	71571621	.	G	GTTTA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=53	GT	1|1
5	71571674	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=53	GT	0|1
5	71572135	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=156	GT	0|1
5	71572291	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=156	GT	1|0
5	71572580	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=195	GT	0|1
5	71572775	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=195	GT	1|1
5	71573238	.	AAAAG	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:6,LOOHD:5;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:2,LOOHD:2;dist2closest=36	GT	0|1
5	71573278	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=36	GT	0|1
5	71573340	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=62	GT	1|0
5	71573473	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=16	GT	0|1
5	71573489	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=16	GT	0|1
5	71573526	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=37	GT	0|1
5	71573818	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=111	GT	0|1
5	71573929	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=15	GT	0|1
5	71573944	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=15	GT	0|1
5	71574159	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=40	GT	1|0
5	71574199	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1	GT	0|1
5	71574200	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1	GT	0|1
5	71574331	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=42	GT	1|0
5	71574373	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:0,LOOHD:0;dist2closest=42	GT	0|1
5	71574987	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=407	GT	0|1
5	71575394	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=407	GT	0|1
5	71576128	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=87	GT	0|1
5	71576215	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=87	GT	1|1
5	71576522	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=77	GT	0|1
5	71576599	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=77	GT	0|1
5	71576694	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=95	GT	0|1
5	71576908	.	GCCA	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=214	GT	0|1
5	71577186	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=275	GT	0|1
5	71577558	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=23	GT	1|0
5	71577581	.	A	ATC	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=23	GT	0|1
5	71578125	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=249	GT	0|1
5	71578374	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=249	GT	0|1
5	71579396	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=348	GT	0|1
5	71579744	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=348	GT	0|1
5	71580765	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=425	GT	0|1
5	71581190	.	GT	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=425	GT	0|1
5	71581780	.	C	CTT	0	Silver	metal=silver;isaac2=HD:2,LOOHD:2;bwa_freebayes=.;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:6,LOOHD:6;dist2closest=245	GT	0/1
5	71582025	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=26	GT	0|1
5	71582051	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=26	GT	0|1
5	71582104	.	CTG	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=53	GT	0|1
5	71582702	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=596	GT	1|1
5	71583781	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=402	GT	1|0
5	71584183	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=133	GT	0|1
5	71584316	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=56	GT	0|1
5	71584372	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=41	GT	0|1
5	71584413	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=41	GT	0|1
5	71584494	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=81	GT	0|1
5	71585280	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=225	GT	0|1
5	71585505	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=225	GT	0|1
5	71585773	.	A	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=74	GT	0|1
5	71585847	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=74	GT	0|1
5	71585953	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=106	GT	1|0
5	71586418	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=290	GT	0|1
5	71586708	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=118	GT	1|1
5	71586826	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=118	GT	0|1
5	71587090	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=33	GT	0|1
5	71587123	.	C	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=33	GT	1|1
5	71587309	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=186	GT	1|1
5	71588547	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=128	GT	0|1
5	71588675	.	A	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=128	GT	0|1
5	71588860	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=185	GT	0|1
5	71589208	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=348	GT	0|1
5	71589585	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=126	GT	0|1
5	71589711	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=80	GT	0|1
5	71589791	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=80	GT	1|0
5	71590109	.	AAC	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=35	GT	1|0
5	71590146	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=35	GT	1|1
5	71590312	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=166	GT	0|1
5	71590554	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=242	GT	1|1
5	71590816	.	C	CA	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:1,LOOHD:1;dist2closest=262	GT	0|1
5	71591732	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=683	GT	1|1
5	71592415	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=675	GT	1|1
5	71593090	.	T	TA	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=675	GT	1|0
5	71594043	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=526	GT	1|1
5	71594569	.	T	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=416	GT	1|1
5	71594985	.	G	GC	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=87	GT	1|1
5	71595072	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=87	GT	1|1
5	71596079	.	A	AT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=121	GT	1|0
5	71596200	.	GATTAAGT	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=121	GT	1|0
5	71596659	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=452	GT	1|1
5	71597529	.	GGTA	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=870	GT	1|1
5	71598448	.	T	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=158	GT	0|1
5	71598606	.	AT	A	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=.;bwa_platypus=HD:2,LOOHD:2;bwa_gatk3=HD:0,LOOHD:0;dist2closest=158	GT	1|0
5	71598926	.	A	AT	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=207	GT	1|0
5	71599133	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=192	GT	0|1
5	71599325	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=192	GT	1|0
5	71600301	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=263	GT	1|1
5	71600564	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=263	GT	1|1
5	71601624	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=1060	GT	0|1
5	71603407	.	G	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=62	GT	1|0
5	71603469	.	A	G	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=62	GT	1|1
5	71604582	.	CTT	C	0	PASS	metal=platinum;isaac2=HD:1,LOOHD:1;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=468	GT	1|0
5	71605052	.	GT	G	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:1,LOOHD:1;bwa_gatk3=HD:1,LOOHD:1;dist2closest=113	GT	0/1
5	71605166	.	G	C	0	Silver	metal=silver;isaac2=.;bwa_freebayes=HD:1,LOOHD:1;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:1,LOOHD:1;dist2closest=113	GT	1|1
5	71605634	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=19	GT	1|1
5	71605653	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=19	GT	1|0
5	71606129	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=476	GT	1|1
5	71607292	.	G	A	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=440	GT	1|0
5	71607732	.	C	T	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=18	GT	0|1
5	71607750	.	C	T	0	PASS	metal=platinum;isaac2=.;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=18	GT	0|1
5	71609301	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=87	GT	1|0
5	71609388	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=87	GT	1|0
5	71609582	.	C	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=194	GT	1|1
5	71610249	.	G	T	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=70	GT	0|1
5	71610319	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=70	GT	1|0
5	71611403	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=265	GT	1|0
5	71611668	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=43	GT	0|1
5	71611711	.	G	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=43	GT	0|1
5	71612665	.	C	A	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=954	GT	1|0
5	71614029	.	T	TACACACACACACACAC,TACACACACAC	0	PASS	metal=platinum;isaac2=HD:2,LOOHD:2;bwa_freebayes=.;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=413	GT	2|1
5	71614442	.	T	C	0	PASS	metal=platinum;isaac2=HD:0,LOOHD:0;bwa_freebayes=HD:0,LOOHD:0;bwa_platypus=HD:0,LOOHD:0;bwa_gatk3=HD:0,LOOHD:0;dist2closest=42	GT	1|1
