Domain-specific acceleration of genomics to enable biological discoveries

Cornell Tech/Cornell, NYC and Ithaca, NY (Feb 2020)
Host: Prof. Daniel D. Lee, Prof. David Albonesi

Columbia University, New York City, NY (Feb 2020)
Host: Prof. Martha Kim

MIT, Boston, MA (Feb 2020)
Host: Prof. Daniel Sanchez

UC San Diego, San Diego, CA (Mar 2020)
Host: Prof. Siavash Mirarab

UT Austin, Austin, TX (Apr 2020)
Host: ECE Department

Rice University, Houston, TX (Apr 2020)
Host: Computer Science Department

GPU-acceleration of long read de novo assembly for pan-genome analysis

NVIDIA Workshop, American Society of Human Genetics (ASHG) 2019, Houston, TX (Oct 2019)
Host: NVIDIA

Darwin: A Genomics Co-processor provides up to 15,000x acceleration on long read assembly

The 18th International System-on-Chip (SoC) Conference, UC Irvine, CA (Oct 2019)
Host: Farhad Mafie

Darwin: A Genomics Co-processor provides up to 15,000x acceleration on long read assembly

USENIX Annual Technical Conference (ATC), Renton, WA (Jul 2019)
Host: “Best of the Rest” session chairs

Hardware-enabled biology: From hardware-acceleration to novel biological discoveries

University of California at Santa Cruz (UCSC), Santa Cruz, CA (Mar 2019)
Host: Prof. David Haussler

All Gene Survey In Mammalian Genomes Reveals Surprising Genes Losses

Stanford Developmental Biology Retreat, Monterey, CA (Sep 2018)

Darwin: A Genomics Co-processor provides up to 15,000x acceleration on long read assembly

The 23rd International Conference on Architectural Support for Programming Languages and Operating Systems (ASPLOS), Williamsburg, VA (Mar 2018)

Darwin: A Genomics Co-processor provides up to 15,000x acceleration on long read assembly

Computer Science Faculty Lunch, Stanford, CA (Feb 2018)

Accelerating Bioinformatics Computations

Stanford Platform Lab Annual Review, Stanford, CA (Feb 2018)

Darwin: A Genomics Co-processor

Pacific Biosciences (PacBio), Menlo Park, CA (Jul 2017)
Host: Dr. Aaron Wenger

Accelerating Genomics Computations 1000x with Hardware

Stanford Platform Lab Retreat, Aptos, CA (Jun 2017)

Darwin: A Genomics Co-processor

Microsoft Research (MSR), Redmond, WA (May 2017)
Host: Geralyn Miller

Darwin: A Genomics Co-processor

NVIDIA GPU Technology Conference (GTC), San Jose, CA (May 2017)

A Hardware-acceleration Framework for Genomic Sequence Alignment

Stanford Developmental Biology Data Discussion (3D) club, Stanford, CA (Mar 2017)

A Genomics Co-processor

Qualcomm Research, San Diego, CA (Aug 2016)
Host: Dr. Karam Chatha