#Partially deleted in new
chr1	3795603	3796784	chr1:3795603-3796784	1000	+
#Deleted in new
chr1	6624862	6625945	chr1:6624862-6625945	1000	+
#Deleted in new
chr1	16644402	16645325	chr1:16644402-16645325	1000	+
#Partially deleted in new
chr1	22451831	22452739	chr1:22451831-22452739	1000	+
#Deleted in new
chr1	28736378	28738004	chr1:28736378-28738004	1000	+
#Deleted in new
chr1	29180951	29182104	chr1:29180951-29182104	1000	+
#Deleted in new
chr1	40257319	40258802	chr1:40257319-40258802	1000	+
#Deleted in new
chr1	55214577	55215850	chr1:55214577-55215850	1000	+
#Deleted in new
chr1	92441504	92442128	chr1:92441504-92442128	869	+
#Partially deleted in new
chr1	147246205	147246781	chr1:147246205-147246781	448	+
#Partially deleted in new
chr1	150820916	150821492	chr1:150820916-150821492	396	+
#Deleted in new
chr1	151165276	151166294	chr1:151165276-151166294	1000	+
#Deleted in new
chr1	154219941	154221827	chr1:154219941-154221827	1000	+
#Deleted in new
chr1	156767101	156768423	chr1:156767101-156768423	1000	+
#Deleted in new
chr1	159511078	159511654	chr1:159511078-159511654	252	+
#Deleted in new
chr1	161098223	161099111	chr1:161098223-161099111	767	+
#Deleted in new
chr1	164085406	164085982	chr1:164085406-164085982	436	+
#Deleted in new
chr1	166875541	166876482	chr1:166875541-166876482	1000	+
#Deleted in new
chr1	169315681	169316257	chr1:169315681-169316257	421	+
#Deleted in new
chr1	174021382	174022626	chr1:174021382-174022626	1000	+
#Deleted in new
chr1	176206352	176207413	chr1:176206352-176207413	1000	+
#Deleted in new
chr1	179491320	179491896	chr1:179491320-179491896	401	+
#Deleted in new
chr1	180501903	180503205	chr1:180501903-180503205	1000	+
#Deleted in new
chr1	194976006	194976582	chr1:194976006-194976582	426	+
#Deleted in new
chr1	197902081	197903276	chr1:197902081-197903276	1000	+
#Deleted in new
chr1	200669231	200670508	chr1:200669231-200670508	1000	+
#Deleted in new
chr1	215507638	215508214	chr1:215507638-215508214	409	+
#Deleted in new
chr1	216024902	216025478	chr1:216024902-216025478	512	+
#Deleted in new
chr1	218927648	218928224	chr1:218927648-218928224	291	+
#Deleted in new
chr1	225154762	225155735	chr1:225154762-225155735	240	+
#Deleted in new
chr1	225240702	225241278	chr1:225240702-225241278	441	+
#Deleted in new
chr1	235733590	235734166	chr1:235733590-235734166	442	+
#Deleted in new
chr1	237375600	237376378	chr1:237375600-237376378	406	+
#Deleted in new
chr1	238654342	238654918	chr1:238654342-238654918	450	+
#Deleted in new
chr1	240749855	240750636	chr1:240749855-240750636	508	+
#Deleted in new
chr1	243255417	243256664	chr1:243255417-243256664	1000	+
#Deleted in new
chr1_KI270709v1_random	30454	31030	chr1_KI270709v1_random:30454-31030	382	+
#Deleted in new
chr2	27369828	27371531	chr2:27369828-27371531	1000	+
#Deleted in new
chr2	54115117	54116031	chr2:54115117-54116031	1000	+
#Partially deleted in new
chr2	73926709	73927487	chr2:73926709-73927487	1000	+
#Deleted in new
chr2	74497770	74498346	chr2:74497770-74498346	404	+
#Partially deleted in new
chr2	98607988	98609274	chr2:98607988-98609274	1000	+
#Deleted in new
chr2	206084725	206086523	chr2:206084725-206086523	1000	+
#Deleted in new
chr3	10248260	10249118	chr3:10248260-10249118	1000	+
#Partially deleted in new
chr3	15206036	15207489	chr3:15206036-15207489	1000	+
#Deleted in new
chr3	39406536	39407397	chr3:39406536-39407397	1000	+
#Deleted in new
chr3	40457099	40458025	chr3:40457099-40458025	1000	+
#Deleted in new
chr3	45689141	45690052	chr3:45689141-45690052	1000	+
#Deleted in new
chr3	47162834	47164883	chr3:47162834-47164883	1000	+
#Deleted in new
chr3	47802729	47803999	chr3:47802729-47803999	1000	+
#Deleted in new
chr3	47824511	47825725	chr3:47824511-47825725	1000	+
#Partially deleted in new
chr3	48918333	48919593	chr3:48918333-48919593	1000	+
#Deleted in new
chr3	49929349	49930321	chr3:49929349-49930321	1000	+
#Deleted in new
chr3	50358663	50359813	chr3:50358663-50359813	1000	+
#Deleted in new
chr3	51538280	51539415	chr3:51538280-51539415	1000	+
#Deleted in new
chr3	52685324	52686673	chr3:52685324-52686673	1000	+
#Deleted in new
chr3	88149366	88150431	chr3:88149366-88150431	1000	+
#Deleted in new
chr3	101573668	101575057	chr3:101573668-101575057	1000	+
#Partially deleted in new
chr3	120847163	120847739	chr3:120847163-120847739	412	+
#Deleted in new
chr3	121748920	121749896	chr3:121748920-121749896	1000	+
#Deleted in new
chr3	125519616	125520399	chr3:125519616-125520399	1000	+
#Deleted in new
chr3	138608255	138609606	chr3:138608255-138609606	1000	+
#Deleted in new
chr3	143001369	143002391	chr3:143001369-143002391	1000	+
#Deleted in new
chr3	150602977	150604249	chr3:150602977-150604249	1000	+
#Deleted in new
chr3	162974889	162975465	chr3:162974889-162975465	429	+
#Partially deleted in new
chr3	187138932	187139681	chr3:187138932-187139681	972	+
#Deleted in new
chr4	473443	474535	chr4:473443-474535	1000	+
#Deleted in new
chr4	49711379	49711955	chr4:49711379-49711955	446	+
#Deleted in new
chr4	178992587	178993163	chr4:178992587-178993163	430	+
#Deleted in new
chr4	183443950	183445314	chr4:183443950-183445314	1000	+
#Deleted in new
chr5	73497804	73499247	chr5:73497804-73499247	1000	+
#Partially deleted in new
chr5	77775409	77776483	chr5:77775409-77776483	1000	+
#Deleted in new
chr5	115615621	115616197	chr5:115615621-115616197	499	+
#Deleted in new
chr5	131164167	131165422	chr5:131164167-131165422	1000	+
#Deleted in new
chr5	134176145	134177230	chr5:134176145-134177230	1000	+
#Deleted in new
chr5	136132542	136133586	chr5:136132542-136133586	1000	+
#Deleted in new
chr5	141063257	141063833	chr5:141063257-141063833	389	+
#Deleted in new
chr5	142108348	142109729	chr5:142108348-142109729	1000	+
#Deleted in new
chr5	177005798	177006944	chr5:177005798-177006944	1000	+
#Deleted in new
chr5	177133069	177135254	chr5:177133069-177135254	1000	+
#Deleted in new
chr5	181260869	181262198	chr5:181260869-181262198	1000	+
#Deleted in new
chr6	28141588	28142512	chr6:28141588-28142512	1000	+
#Deleted in new
chr6	75601328	75603076	chr6:75601328-75603076	1000	+
#Deleted in new
chr6	143842979	143844103	chr6:143842979-143844103	1000	+
#Deleted in new
chr7	8796851	8797427	chr7:8796851-8797427	426	+
#Deleted in new
chr7	11438067	11438643	chr7:11438067-11438643	424	+
#Partially deleted in new
chr7	23181812	23182778	chr7:23181812-23182778	1000	+
#Deleted in new
chr7	23299085	23299992	chr7:23299085-23299992	1000	+
#Deleted in new
chr7	26813270	26813846	chr7:26813270-26813846	342	+
#Deleted in new
chr7	31595785	31596361	chr7:31595785-31596361	474	+
#Deleted in new
chr7	34761790	34762566	chr7:34761790-34762566	371	+
#Deleted in new
chr7	37993432	37994008	chr7:37993432-37994008	429	+
#Deleted in new
chr7	40133979	40134945	chr7:40133979-40134945	1000	+
#Deleted in new
chr7	40737116	40737692	chr7:40737116-40737692	438	+
#Deleted in new
chr7	43758378	43759425	chr7:43758378-43759425	1000	+
#Deleted in new
chr7	44489975	44490907	chr7:44489975-44490907	1000	+
#Partially deleted in new
chr7	54213283	54213859	chr7:54213283-54213859	432	+
#Deleted in new
chr7	55365604	55366900	chr7:55365604-55366900	1000	+
#Deleted in new
chr7	62242097	62242673	chr7:62242097-62242673	419	+
#Deleted in new
chr7	73682630	73683677	chr7:73682630-73683677	1000	+
#Deleted in new
chr7	76549214	76550042	chr7:76549214-76550042	1000	+
#Deleted in new
chr7	77416151	77417070	chr7:77416151-77417070	1000	+
#Deleted in new
chr7	98878303	98879419	chr7:98878303-98879419	1000	+
#Deleted in new
chr7	105185027	105185603	chr7:105185027-105185603	354	+
#Deleted in new
chr7	106111573	106112762	chr7:106111573-106112762	1000	+
#Deleted in new
chr7	107743668	107744738	chr7:107743668-107744738	1000	+
#Deleted in new
chr7	111160768	111161344	chr7:111160768-111161344	436	+
#Deleted in new
chr7	111237091	111237667	chr7:111237091-111237667	393	+
#Deleted in new
chr7	112019347	112020124	chr7:112019347-112020124	383	+
#Deleted in new
chr7	113726301	113726877	chr7:113726301-113726877	450	+
#Deleted in new
chr7	124310185	124310761	chr7:124310185-124310761	421	+
#Deleted in new
chr7	128530741	128532594	chr7:128530741-128532594	1000	+
#Deleted in new
chr7	129611196	129612644	chr7:129611196-129612644	1000	+
#Deleted in new
chr7	131327669	131328620	chr7:131327669-131328620	1000	+
#Split in new
chr7	139035349	139036616	chr7:139035349-139036616	1000	+
#Deleted in new
chr7	140672785	140673712	chr7:140672785-140673712	1000	+
#Deleted in new
chr7	148698488	148700110	chr7:148698488-148700110	1000	+
#Deleted in new
chr7	149195236	149196824	chr7:149195236-149196824	1000	+
#Deleted in new
chr7	151248516	151249440	chr7:151248516-151249440	1000	+
#Deleted in new
chr8	9555811	9556674	chr8:9555811-9556674	1000	+
#Deleted in new
chr8	10235233	10235809	chr8:10235233-10235809	415	+
#Deleted in new
chr8	11284254	11285105	chr8:11284254-11285105	1000	+
#Deleted in new
chr8	12561866	12562643	chr8:12561866-12562643	461	+
#Deleted in new
chr8	16540365	16540941	chr8:16540365-16540941	446	+
#Deleted in new
chr8	26963983	26964559	chr8:26963983-26964559	512	+
#Deleted in new
chr8	54134727	54135579	chr8:54134727-54135579	1000	+
#Deleted in new
chr8	144326397	144327656	chr8:144326397-144327656	1000	+
#Deleted in new
chr9	19048991	19050103	chr9:19048991-19050103	1000	+
#Deleted in new
chr9	21334615	21335700	chr9:21334615-21335700	1000	+
#Deleted in new
chr9	31866613	31867189	chr9:31866613-31867189	387	+
#Deleted in new
chr9	33523190	33524420	chr9:33523190-33524420	1000	+
#Deleted in new
chr9	34328732	34329755	chr9:34328732-34329755	1000	+
#Deleted in new
chr9	34637253	34638156	chr9:34637253-34638156	1000	+
#Deleted in new
chr9	35071476	35072698	chr9:35071476-35072698	1000	+
#Deleted in new
chr9	128191058	128192079	chr9:128191058-128192079	1000	+
#Deleted in new
chr9	137328115	137328691	chr9:137328115-137328691	847	+
#Deleted in new
chr10	7787922	7789004	chr10:7787922-7789004	1000	+
#Deleted in new
chr10	17201173	17202122	chr10:17201173-17202122	1000	+
#Deleted in new
chr10	22340250	22341352	chr10:22340250-22341352	1000	+
#Deleted in new
chr10	42083289	42083865	chr10:42083289-42083865	369	+
#Deleted in new
chr10	92290872	92291945	chr10:92290872-92291945	1000	+
#Deleted in new
chr10	114821368	114822810	chr10:114821368-114822810	1000	+
#Deleted in new
chr10	130110184	130111086	chr10:130110184-130111086	1000	+
#Deleted in new
chr11	576126	577301	chr11:576126-577301	1000	+
#Deleted in new
chr11	9460911	9461775	chr11:9460911-9461775	1000	+
#Deleted in new
chr11	14519557	14520701	chr11:14519557-14520701	1000	+
#Deleted in new
chr11	16738189	16739401	chr11:16738189-16739401	1000	+
#Deleted in new
chr11	46593301	46594292	chr11:46593301-46594292	1000	+
#Deleted in new
chr11	65116678	65117915	chr11:65116678-65117915	1000	+
#Deleted in new
chr11	66479643	66480660	chr11:66479643-66480660	1000	+
#Deleted in new
chr11	87490692	87491472	chr11:87490692-87491472	390	+
#Deleted in new
chr11	108008625	108009825	chr11:108008625-108009825	1000	+
#Deleted in new
chr11	130915894	130916694	chr11:130915894-130916694	1000	+
#Deleted in new
chr12	642544	643348	chr12:642544-643348	1000	+
#Deleted in new
chr12	6341283	6342214	chr12:6341283-6342214	1000	+
#Deleted in new
chr12	6383640	6384757	chr12:6383640-6384757	1000	+
#Deleted in new
chr12	10075208	10075784	chr12:10075208-10075784	498	+
#Partially deleted in new
chr12	12813195	12814005	chr12:12813195-12814005	1000	+
#Deleted in new
chr12	13903947	13904523	chr12:13903947-13904523	403	+
#Deleted in new
chr12	16364168	16364744	chr12:16364168-16364744	492	+
#Partially deleted in new
chr12	24214986	24215562	chr12:24214986-24215562	453	+
#Deleted in new
chr12	25045362	25045938	chr12:25045362-25045938	496	+
#Deleted in new
chr12	27779608	27781047	chr12:27779608-27781047	1000	+
#Deleted in new
chr12	28049604	28050180	chr12:28049604-28050180	420	+
#Deleted in new
chr12	31959158	31960080	chr12:31959158-31960080	1000	+
#Deleted in new
chr12	38704999	38705575	chr12:38704999-38705575	408	+
#Deleted in new
chr12	43624737	43625313	chr12:43624737-43625313	503	+
#Deleted in new
chr12	48529943	48530923	chr12:48529943-48530923	246	+
#Deleted in new
chr12	48681565	48682469	chr12:48681565-48682469	1000	+
#Deleted in new
chr12	53452104	53453009	chr12:53452104-53453009	1000	+
#Deleted in new
chr12	53500800	53501921	chr12:53500800-53501921	1000	+
#Partially deleted in new
chr12	55715902	55716746	chr12:55715902-55716746	1000	+
#Partially deleted in new
chr12	60092336	60092912	chr12:60092336-60092912	378	+
#Deleted in new
chr12	61451306	61451882	chr12:61451306-61451882	439	+
#Partially deleted in new
chr12	65043284	65043860	chr12:65043284-65043860	385	+
#Deleted in new
chr12	65266646	65267222	chr12:65266646-65267222	454	+
#Deleted in new
chr12	67268275	67270571	chr12:67268275-67270571	1000	+
#Deleted in new
chr12	69239412	69240570	chr12:69239412-69240570	1000	+
#Deleted in new
chr12	69470025	69470917	chr12:69470025-69470917	1000	+
#Deleted in new
chr12	70583866	70584694	chr12:70583866-70584694	239	+
#Deleted in new
chr12	71839390	71840397	chr12:71839390-71840397	1000	+
#Deleted in new
chr12	74537511	74538571	chr12:74537511-74538571	1000	+
#Deleted in new
chr12	88141600	88142730	chr12:88141600-88142730	1000	+
#Deleted in new
chr12	90218981	90219557	chr12:90218981-90219557	414	+
#Deleted in new
chr12	90431171	90432103	chr12:90431171-90432103	293	+
#Deleted in new
chr12	103965664	103966594	chr12:103965664-103966594	1000	+
#Deleted in new
chr12	107942842	107943418	chr12:107942842-107943418	427	+
#Deleted in new
chr12	110613904	110614757	chr12:110613904-110614757	1000	+
#Deleted in new
chr12	112107892	112109147	chr12:112107892-112109147	1000	+
#Deleted in new
chr12	120200496	120201399	chr12:120200496-120201399	1000	+
#Deleted in new
chr12	120534115	120535284	chr12:120534115-120535284	1000	+
#Deleted in new
chr12	131710431	131711696	chr12:131710431-131711696	1000	+
#Deleted in new
chr13	27251243	27252296	chr13:27251243-27252296	1000	+
#Deleted in new
chr13	52449850	52450944	chr13:52449850-52450944	1000	+
#Deleted in new
chr13	68640110	68640900	chr13:68640110-68640900	395	+
#Deleted in new
chr13	111152994	111154006	chr13:111152994-111154006	1000	+
#Deleted in new
chr14	23953479	23954402	chr14:23953479-23954402	1000	+
#Deleted in new
chr14	31206572	31208604	chr14:31206572-31208604	1000	+
#Deleted in new
chr14	54440634	54441636	chr14:54440634-54441636	1000	+
#Deleted in new
chr14	90331320	90332139	chr14:90331320-90332139	1000	+
#Deleted in new
chr15	20391942	20392841	chr15:20391942-20392841	385	+
#Deleted in new
chr15	20399212	20399788	chr15:20399212-20399788	445	+
#Deleted in new
chr15	34209359	34210330	chr15:34209359-34210330	1000	+
#Deleted in new
chr15	38453874	38454672	chr15:38453874-38454672	1000	+
#Deleted in new
chr15	52568006	52569540	chr15:52568006-52569540	1000	+
#Deleted in new
chr15	58932772	58934164	chr15:58932772-58934164	1000	+
#Deleted in new
chr15	65132719	65134012	chr15:65132719-65134012	1000	+
#Deleted in new
chr15	65610538	65611442	chr15:65610538-65611442	1000	+
#Deleted in new
chr15	68277092	68278816	chr15:68277092-68278816	1000	+
#Deleted in new
chr15	74614978	74616584	chr15:74614978-74616584	1000	+
#Deleted in new
chr16	1308699	1310516	chr16:1308699-1310516	1000	+
#Deleted in new
chr16	21519995	21521157	chr16:21519995-21521157	1000	+
#Deleted in new
chr16	24539336	24540534	chr16:24539336-24540534	1000	+
#Deleted in new
chr16	31507981	31509086	chr16:31507981-31509086	1000	+
#Deleted in new
chr16	48244012	48245148	chr16:48244012-48245148	1000	+
#Partially deleted in new
chr16	66830241	66831321	chr16:66830241-66831321	1000	+
#Deleted in new
chr16	67191906	67192797	chr16:67191906-67192797	1000	+
#Deleted in new
chr16	69311113	69312138	chr16:69311113-69312138	1000	+
#Deleted in new
chr17	5438520	5439381	chr17:5438520-5439381	1000	+
#Deleted in new
chr17	30970750	30971761	chr17:30970750-30971761	1000	+
#Deleted in new
chr17	32341725	32342627	chr17:32341725-32342627	1000	+
#Deleted in new
chr17	42679365	42680416	chr17:42679365-42680416	1000	+
#Deleted in new
chr17	47188413	47189546	chr17:47188413-47189546	1000	+
#Deleted in new
chr17_GL000205v2_random	54662	55238	chr17_GL000205v2_random:54662-55238	388	+
#Deleted in new
chr17_GL000205v2_random	77758	79204	chr17_GL000205v2_random:77758-79204	408	+
#Deleted in new
chr18	9102456	9103378	chr18:9102456-9103378	1000	+
#Deleted in new
chr18	12376447	12377486	chr18:12376447-12377486	1000	+
#Deleted in new
chr18	50967706	50968722	chr18:50967706-50968722	1000	+
#Deleted in new
chr18	74596887	74597870	chr18:74596887-74597870	1000	+
#Deleted in new
chr19	8444849	8445988	chr19:8444849-8445988	1000	+
#Deleted in new
chr19	18831621	18832967	chr19:18831621-18832967	1000	+
#Partially deleted in new
chr19	29714765	29716177	chr19:29714765-29716177	1000	+
#Deleted in new
chr19	41263987	41265084	chr19:41263987-41265084	1000	+
#Deleted in new
chr19	42241919	42243033	chr19:42241919-42243033	1000	+
#Deleted in new
chr19	44499956	44500778	chr19:44499956-44500778	1000	+
#Deleted in new
chr19	58002170	58003138	chr19:58002170-58003138	1000	+
#Deleted in new
chr20	2470166	2471103	chr20:2470166-2471103	1000	+
#Deleted in new
chr20	3045676	3047065	chr20:3045676-3047065	1000	+
#Partially deleted in new
chr20	4506234	4506810	chr20:4506234-4506810	392	+
#Deleted in new
chr20	21302990	21303947	chr20:21302990-21303947	1000	+
#Deleted in new
chr20	58650703	58652481	chr20:58650703-58652481	1000	+
#Deleted in new
chr20	63707215	63708449	chr20:63707215-63708449	1000	+
#Deleted in new
chr21	10360932	10361508	chr21:10360932-10361508	487	+
#Deleted in new
chr21	28884989	28885899	chr21:28884989-28885899	1000	+
#Deleted in new
chr21	33542767	33543879	chr21:33542767-33543879	1000	+
#Partially deleted in new
chr21	42893005	42894157	chr21:42893005-42894157	1000	+
#Deleted in new
chr22	11027599	11028175	chr22:11027599-11028175	163	+
#Deleted in new
chr22	11623504	11624080	chr22:11623504-11624080	289	+
#Deleted in new
chr22	17158345	17160218	chr22:17158345-17160218	1000	+
#Deleted in new
chr22	35257099	35258482	chr22:35257099-35258482	1000	+
#Deleted in new
chr22	45671702	45672935	chr22:45671702-45672935	1000	+
#Deleted in new
chrUn_GL000216v2	200	916	chrUn_GL000216v2:200-916	350	+
#Deleted in new
chrUn_GL000219v1	96807	97383	chrUn_GL000219v1:96807-97383	440	+
#Partially deleted in new
chrUn_GL000219v1	107338	108128	chrUn_GL000219v1:107338-108128	575	+
#Deleted in new
chrUn_GL000219v1	114488	115264	chrUn_GL000219v1:114488-115264	440	+
#Partially deleted in new
chrUn_GL000219v1	127503	128539	chrUn_GL000219v1:127503-128539	232	+
#Deleted in new
chrUn_GL000224v1	35326	35902	chrUn_GL000224v1:35326-35902	474	+
#Deleted in new
chrUn_GL000224v1	36427	37003	chrUn_GL000224v1:36427-37003	411	+
#Deleted in new
chrUn_KI270337v1	236	1121	chrUn_KI270337v1:236-1121	1000	+
#Deleted in new
chrUn_KI270466v1	209	1177	chrUn_KI270466v1:209-1177	1000	+
#Deleted in new
chrUn_KI270467v1	1924	3867	chrUn_KI270467v1:1924-3867	1000	+
#Deleted in new
chrUn_KI270750v1	19389	19965	chrUn_KI270750v1:19389-19965	492	+
#Deleted in new
chrUn_KI270750v1	25450	26026	chrUn_KI270750v1:25450-26026	404	+
#Deleted in new
chrUn_KI270751v1	111363	112404	chrUn_KI270751v1:111363-112404	574	+
#Deleted in new
chrUn_KI270751v1	138108	138684	chrUn_KI270751v1:138108-138684	439	+
#Deleted in new
chrX	24148912	24150560	chrX:24148912-24150560	1000	+
#Deleted in new
chrY	2935342	2935918	chrY:2935342-2935918	738	+