This track shows the summits processed and mapped to the Repeat Browserfrom Theunissen et al. 2016, exploring the naive and primed human ES states.
These states have characteristic repeat expression patterns.
Two Chip-Seq assays were done, one for Kap1 and the other one for the H3K9me3 chromatin mark.
Use in combination with the corresponding meta summit and coverage tracks.
We obtained the sequencing reads from NCBI GEO GSE75868. Bowtie2 was run with in single-end mode and with --end-to-end --sensitive. MACS2 was run with --keep-dup all. The control was the file hesc_prime_idna_rj054.
Theunissen et al., Cell Stem Cell, 2016
Email max@soe.ucsc.edu or jferna10@ucsc.edu